Query 020307
Match_columns 328
No_of_seqs 345 out of 3571
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 1.2E-27 2.6E-32 205.6 19.4 188 128-328 28-238 (238)
2 PF01209 Ubie_methyltran: ubiE 100.0 9.1E-29 2E-33 214.7 11.4 187 128-327 24-233 (233)
3 PLN02233 ubiquinone biosynthes 99.9 2.5E-24 5.3E-29 191.0 19.7 188 130-327 52-261 (261)
4 KOG1540 Ubiquinone biosynthesi 99.9 5.1E-24 1.1E-28 179.7 18.1 176 128-313 77-278 (296)
5 PRK11088 rrmA 23S rRNA methylt 99.9 3.3E-24 7.1E-29 191.7 17.8 170 60-273 2-185 (272)
6 TIGR02752 MenG_heptapren 2-hep 99.9 8.9E-22 1.9E-26 172.0 20.4 183 132-327 26-231 (231)
7 PLN02396 hexaprenyldihydroxybe 99.9 1.7E-22 3.6E-27 183.0 14.8 151 160-314 130-287 (322)
8 COG2227 UbiG 2-polyprenyl-3-me 99.9 1.2E-22 2.5E-27 171.8 9.6 147 160-314 58-213 (243)
9 PLN02244 tocopherol O-methyltr 99.9 3.2E-21 6.9E-26 177.4 19.5 153 160-315 117-277 (340)
10 PTZ00098 phosphoethanolamine N 99.9 2E-20 4.4E-25 166.1 19.0 153 156-316 47-202 (263)
11 PF13489 Methyltransf_23: Meth 99.9 1.1E-21 2.4E-26 161.4 9.5 139 159-313 20-160 (161)
12 PRK11873 arsM arsenite S-adeno 99.9 1.1E-19 2.4E-24 162.6 21.4 156 158-316 74-230 (272)
13 PLN02490 MPBQ/MSBQ methyltrans 99.9 1E-19 2.2E-24 165.3 21.1 144 161-316 113-256 (340)
14 PRK11036 putative S-adenosyl-L 99.8 3.1E-20 6.8E-25 164.6 16.6 157 160-320 43-211 (255)
15 PRK05785 hypothetical protein; 99.8 4.6E-20 9.9E-25 160.1 15.8 175 130-327 28-224 (226)
16 PRK15068 tRNA mo(5)U34 methylt 99.8 8.6E-20 1.9E-24 166.3 17.9 156 157-316 118-274 (322)
17 PRK00216 ubiE ubiquinone/menaq 99.8 2.5E-19 5.3E-24 157.1 19.7 170 157-328 47-239 (239)
18 PRK14103 trans-aconitate 2-met 99.8 1.2E-19 2.6E-24 160.9 17.5 146 157-313 25-181 (255)
19 TIGR00452 methyltransferase, p 99.8 1.5E-19 3.2E-24 163.1 18.2 156 157-316 117-273 (314)
20 PF13847 Methyltransf_31: Meth 99.8 3.1E-20 6.6E-25 151.7 11.9 143 161-308 3-152 (152)
21 PF08241 Methyltransf_11: Meth 99.8 5.3E-20 1.2E-24 137.4 10.6 95 166-267 1-95 (95)
22 PLN02336 phosphoethanolamine N 99.8 7.6E-19 1.6E-23 169.3 19.5 150 157-314 262-412 (475)
23 smart00828 PKS_MT Methyltransf 99.8 5.7E-19 1.2E-23 153.5 15.8 144 163-316 1-144 (224)
24 PRK11207 tellurite resistance 99.8 1.1E-18 2.3E-23 148.6 16.9 143 155-314 24-168 (197)
25 PRK10258 biotin biosynthesis p 99.8 6.4E-19 1.4E-23 155.9 15.8 144 157-312 38-183 (251)
26 PRK08317 hypothetical protein; 99.8 2.8E-18 6.1E-23 150.2 18.8 154 157-314 15-174 (241)
27 TIGR00740 methyltransferase, p 99.8 3.7E-19 7.9E-24 156.3 13.0 151 160-314 52-225 (239)
28 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 3.5E-18 7.5E-23 148.2 18.3 166 157-327 35-223 (223)
29 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.5E-18 3.3E-23 152.9 16.2 151 160-314 55-228 (247)
30 KOG1270 Methyltransferases [Co 99.8 2.5E-19 5.5E-24 152.4 9.7 144 162-313 90-246 (282)
31 PF12847 Methyltransf_18: Meth 99.8 1.3E-18 2.8E-23 134.4 10.4 106 161-269 1-111 (112)
32 COG2230 Cfa Cyclopropane fatty 99.8 1.3E-17 2.8E-22 146.1 16.9 155 156-316 67-223 (283)
33 PF02353 CMAS: Mycolic acid cy 99.8 1.2E-17 2.7E-22 148.2 16.3 154 157-316 58-217 (273)
34 PF08003 Methyltransf_9: Prote 99.8 4.1E-18 8.8E-23 149.3 12.7 155 157-315 111-266 (315)
35 TIGR02072 BioC biotin biosynth 99.8 1.7E-17 3.6E-22 145.4 16.4 140 161-313 34-173 (240)
36 PRK01683 trans-aconitate 2-met 99.8 2.5E-17 5.5E-22 146.3 17.4 146 157-311 27-182 (258)
37 PRK06202 hypothetical protein; 99.8 2.3E-17 5E-22 144.2 15.0 154 160-323 59-228 (232)
38 TIGR02716 C20_methyl_CrtF C-20 99.8 6.2E-17 1.4E-21 147.3 18.4 152 157-314 145-304 (306)
39 KOG4300 Predicted methyltransf 99.7 2.5E-17 5.3E-22 135.2 12.4 152 158-316 73-232 (252)
40 TIGR02021 BchM-ChlM magnesium 99.7 2.7E-17 5.8E-22 142.5 12.7 145 160-315 54-205 (219)
41 PRK12335 tellurite resistance 99.7 9.1E-17 2E-21 144.7 16.6 137 160-314 119-257 (287)
42 PF07021 MetW: Methionine bios 99.7 2.7E-17 5.8E-22 135.5 11.8 141 160-316 12-167 (193)
43 TIGR00477 tehB tellurite resis 99.7 1.4E-16 3.1E-21 135.3 15.2 140 157-314 26-167 (195)
44 PRK00107 gidB 16S rRNA methylt 99.7 4.4E-16 9.5E-21 130.7 17.9 124 161-315 45-168 (187)
45 PRK05134 bifunctional 3-demeth 99.7 1.5E-16 3.3E-21 139.1 14.9 150 159-314 46-203 (233)
46 TIGR01983 UbiG ubiquinone bios 99.7 1.7E-16 3.7E-21 137.9 14.4 148 161-315 45-202 (224)
47 PF08242 Methyltransf_12: Meth 99.7 4.8E-18 1E-22 128.4 2.7 97 166-265 1-99 (99)
48 PLN02232 ubiquinone biosynthes 99.7 2.4E-16 5.3E-21 129.6 12.5 127 189-315 1-146 (160)
49 PRK08287 cobalt-precorrin-6Y C 99.7 2E-15 4.3E-20 127.6 17.8 127 157-313 27-153 (187)
50 PF13649 Methyltransf_25: Meth 99.7 9.3E-17 2E-21 121.8 7.6 95 165-263 1-101 (101)
51 TIGR02081 metW methionine bios 99.7 1.4E-15 3.1E-20 129.2 15.4 140 161-316 13-167 (194)
52 TIGR00138 gidB 16S rRNA methyl 99.7 1.5E-15 3.2E-20 127.3 14.9 101 161-269 42-142 (181)
53 PRK04266 fibrillarin; Provisio 99.7 5.9E-15 1.3E-19 127.6 19.0 147 157-327 68-225 (226)
54 PRK07580 Mg-protoporphyrin IX 99.7 7.5E-16 1.6E-20 134.4 13.3 146 160-316 62-214 (230)
55 TIGR00537 hemK_rel_arch HemK-r 99.7 7.9E-15 1.7E-19 123.0 17.9 134 157-320 15-169 (179)
56 PLN02585 magnesium protoporphy 99.7 3.5E-15 7.6E-20 135.0 16.7 147 161-316 144-299 (315)
57 PRK00121 trmB tRNA (guanine-N( 99.7 1.1E-15 2.4E-20 130.5 12.6 108 161-271 40-158 (202)
58 PLN02336 phosphoethanolamine N 99.7 9.1E-16 2E-20 148.0 13.0 143 157-313 33-179 (475)
59 PLN03075 nicotianamine synthas 99.7 4.2E-15 9.2E-20 131.8 15.8 145 161-328 123-275 (296)
60 COG4106 Tam Trans-aconitate me 99.6 7.8E-16 1.7E-20 127.4 9.6 145 157-310 26-180 (257)
61 PRK11705 cyclopropane fatty ac 99.6 2.9E-15 6.4E-20 139.6 14.6 144 157-315 163-311 (383)
62 PF03848 TehB: Tellurite resis 99.6 6.5E-15 1.4E-19 123.0 14.8 139 157-313 26-166 (192)
63 PRK00517 prmA ribosomal protei 99.6 8.3E-15 1.8E-19 129.4 15.8 133 160-328 118-250 (250)
64 TIGR03587 Pse_Me-ase pseudamin 99.6 3.2E-15 6.8E-20 127.7 12.7 103 160-273 42-146 (204)
65 TIGR03840 TMPT_Se_Te thiopurin 99.6 9.7E-15 2.1E-19 125.3 15.5 139 160-312 33-183 (213)
66 PRK06922 hypothetical protein; 99.6 2.1E-15 4.6E-20 145.3 12.4 109 158-270 415-538 (677)
67 PF05401 NodS: Nodulation prot 99.6 3.9E-15 8.5E-20 122.9 11.9 150 157-328 39-197 (201)
68 PRK00377 cbiT cobalt-precorrin 99.6 3.6E-14 7.8E-19 121.0 18.1 127 157-310 36-164 (198)
69 KOG1271 Methyltransferases [Ge 99.6 7.5E-15 1.6E-19 118.3 12.5 132 164-320 70-209 (227)
70 TIGR02469 CbiT precorrin-6Y C5 99.6 1.4E-14 3E-19 113.6 12.7 107 157-269 15-122 (124)
71 TIGR00091 tRNA (guanine-N(7)-) 99.6 9.1E-15 2E-19 124.2 12.3 109 161-272 16-135 (194)
72 smart00138 MeTrc Methyltransfe 99.6 8.6E-15 1.9E-19 130.0 12.4 109 161-269 99-242 (264)
73 PRK13255 thiopurine S-methyltr 99.6 7.2E-14 1.6E-18 120.4 16.1 140 160-313 36-187 (218)
74 PTZ00146 fibrillarin; Provisio 99.6 1.8E-13 3.8E-18 121.1 18.5 149 157-326 128-285 (293)
75 PRK13944 protein-L-isoaspartat 99.6 3E-14 6.5E-19 122.0 13.4 105 157-269 68-173 (205)
76 COG4976 Predicted methyltransf 99.6 6E-15 1.3E-19 123.1 7.5 152 160-328 124-286 (287)
77 PRK14968 putative methyltransf 99.6 1.8E-13 4E-18 115.4 16.5 129 160-314 22-171 (188)
78 PRK14121 tRNA (guanine-N(7)-)- 99.5 5.3E-14 1.1E-18 129.4 12.8 107 158-272 119-238 (390)
79 PRK13942 protein-L-isoaspartat 99.5 7.7E-14 1.7E-18 120.0 13.1 104 157-269 72-176 (212)
80 COG2264 PrmA Ribosomal protein 99.5 1.6E-13 3.5E-18 121.4 15.0 138 161-328 162-300 (300)
81 PRK14967 putative methyltransf 99.5 4.3E-13 9.3E-18 116.5 16.8 161 159-328 34-223 (223)
82 COG2242 CobL Precorrin-6B meth 99.5 1.2E-12 2.6E-17 107.3 17.3 129 156-314 29-159 (187)
83 PF05148 Methyltransf_8: Hypot 99.5 1E-13 2.2E-18 115.3 11.1 157 129-327 38-197 (219)
84 PRK15001 SAM-dependent 23S rib 99.5 4.3E-13 9.3E-18 123.9 16.3 112 157-269 224-340 (378)
85 PF06325 PrmA: Ribosomal prote 99.5 2.1E-13 4.5E-18 121.9 13.8 136 160-328 160-295 (295)
86 TIGR03533 L3_gln_methyl protei 99.5 7.2E-13 1.6E-17 119.0 17.3 132 161-319 121-277 (284)
87 TIGR01177 conserved hypothetic 99.5 2.3E-13 5E-18 124.9 14.4 129 157-316 178-315 (329)
88 TIGR00406 prmA ribosomal prote 99.5 2.4E-13 5.1E-18 122.5 14.0 130 160-320 158-287 (288)
89 TIGR00080 pimt protein-L-isoas 99.5 2E-13 4.3E-18 117.9 13.0 104 157-269 73-177 (215)
90 TIGR03534 RF_mod_PrmC protein- 99.5 5E-13 1.1E-17 118.1 15.7 128 161-315 87-240 (251)
91 KOG2361 Predicted methyltransf 99.5 4.7E-14 1E-18 118.9 7.8 147 163-313 73-234 (264)
92 PRK11188 rrmJ 23S rRNA methylt 99.5 3.5E-13 7.5E-18 115.6 13.3 99 159-271 49-167 (209)
93 PRK09489 rsmC 16S ribosomal RN 99.5 1.5E-12 3.3E-17 119.4 17.9 105 160-270 195-304 (342)
94 PF13659 Methyltransf_26: Meth 99.5 1.6E-13 3.4E-18 106.7 9.7 107 162-271 1-117 (117)
95 PRK11805 N5-glutamine S-adenos 99.5 1.7E-12 3.7E-17 117.6 16.7 127 163-316 135-286 (307)
96 PF05175 MTS: Methyltransferas 99.5 5.9E-13 1.3E-17 110.6 12.4 110 157-270 27-141 (170)
97 TIGR03438 probable methyltrans 99.5 5.5E-13 1.2E-17 120.8 12.9 108 160-269 62-177 (301)
98 KOG1541 Predicted protein carb 99.5 1.9E-13 4.2E-18 113.5 8.1 101 161-271 50-162 (270)
99 PF05891 Methyltransf_PK: AdoM 99.5 6.2E-13 1.3E-17 111.8 11.2 149 161-320 55-205 (218)
100 TIGR00536 hemK_fam HemK family 99.4 2.9E-12 6.3E-17 115.3 15.9 126 163-314 116-267 (284)
101 PRK07402 precorrin-6B methylas 99.4 1.8E-12 4E-17 110.3 13.4 108 157-271 36-144 (196)
102 PHA03411 putative methyltransf 99.4 3.2E-12 6.9E-17 111.9 14.9 126 161-311 64-209 (279)
103 KOG3045 Predicted RNA methylas 99.4 2.8E-12 6E-17 109.1 13.9 162 123-328 139-304 (325)
104 PRK00312 pcm protein-L-isoaspa 99.4 1.8E-12 4E-17 111.6 13.2 103 157-270 74-176 (212)
105 PF00891 Methyltransf_2: O-met 99.4 2.4E-12 5.2E-17 113.2 14.2 134 159-305 98-241 (241)
106 COG4123 Predicted O-methyltran 99.4 5.4E-12 1.2E-16 109.0 15.0 135 157-316 40-194 (248)
107 PRK13256 thiopurine S-methyltr 99.4 9.2E-12 2E-16 107.0 16.1 141 159-313 41-196 (226)
108 PRK14966 unknown domain/N5-glu 99.4 1.5E-11 3.2E-16 114.0 17.7 128 161-315 251-404 (423)
109 PRK09328 N5-glutamine S-adenos 99.4 2.4E-11 5.2E-16 108.9 17.4 129 159-314 106-260 (275)
110 COG2519 GCD14 tRNA(1-methylade 99.4 5.6E-12 1.2E-16 108.0 12.4 110 155-272 88-198 (256)
111 COG2518 Pcm Protein-L-isoaspar 99.4 6.1E-12 1.3E-16 105.5 11.9 105 155-270 66-170 (209)
112 PF01135 PCMT: Protein-L-isoas 99.4 2.2E-12 4.8E-17 110.0 9.3 106 156-270 67-173 (209)
113 PF05219 DREV: DREV methyltran 99.4 8E-12 1.7E-16 107.5 12.3 145 161-320 94-243 (265)
114 KOG3010 Methyltransferase [Gen 99.4 2.8E-12 6.1E-17 108.3 9.2 121 163-288 35-156 (261)
115 cd02440 AdoMet_MTases S-adenos 99.4 8.2E-12 1.8E-16 93.6 10.8 101 164-268 1-103 (107)
116 TIGR00563 rsmB ribosomal RNA s 99.4 1.3E-11 2.8E-16 117.2 14.4 129 156-286 233-385 (426)
117 PF12147 Methyltransf_20: Puta 99.4 1.1E-11 2.4E-16 107.9 12.5 165 160-327 134-311 (311)
118 PF05724 TPMT: Thiopurine S-me 99.3 2.8E-11 6.1E-16 104.1 14.7 143 159-315 35-189 (218)
119 PRK10901 16S rRNA methyltransf 99.3 5.2E-11 1.1E-15 113.1 17.2 113 156-272 239-375 (427)
120 PRK01544 bifunctional N5-gluta 99.3 2.9E-11 6.3E-16 116.8 15.6 128 161-314 138-291 (506)
121 PRK14901 16S rRNA methyltransf 99.3 2E-11 4.4E-16 116.2 14.3 114 156-272 247-387 (434)
122 PRK13943 protein-L-isoaspartat 99.3 8.4E-12 1.8E-16 113.3 11.1 104 157-269 76-180 (322)
123 PF08704 GCD14: tRNA methyltra 99.3 2.5E-11 5.4E-16 105.7 13.4 130 156-314 35-169 (247)
124 PF02390 Methyltransf_4: Putat 99.3 1.4E-11 3E-16 104.3 11.4 101 163-271 19-135 (195)
125 PF06080 DUF938: Protein of un 99.3 3.9E-11 8.4E-16 100.5 13.6 149 164-316 28-192 (204)
126 COG2813 RsmC 16S RNA G1207 met 99.3 1.2E-10 2.5E-15 102.8 17.2 141 157-327 154-299 (300)
127 PRK14903 16S rRNA methyltransf 99.3 3.1E-11 6.7E-16 114.5 13.3 126 156-284 232-381 (431)
128 TIGR00446 nop2p NOL1/NOP2/sun 99.3 4.9E-11 1.1E-15 106.1 13.1 127 157-286 67-216 (264)
129 TIGR03704 PrmC_rel_meth putati 99.3 1.4E-10 3E-15 102.3 15.5 130 162-320 87-244 (251)
130 PRK04457 spermidine synthase; 99.3 4.3E-11 9.3E-16 106.2 11.4 110 160-271 65-179 (262)
131 PRK14904 16S rRNA methyltransf 99.3 1E-10 2.2E-15 111.8 14.7 120 156-279 245-387 (445)
132 TIGR00438 rrmJ cell division p 99.2 6.5E-11 1.4E-15 100.1 11.3 98 159-270 30-147 (188)
133 COG2890 HemK Methylase of poly 99.2 4.7E-10 1E-14 100.3 16.7 135 164-326 113-275 (280)
134 PRK01581 speE spermidine synth 99.2 3.1E-10 6.8E-15 103.2 15.6 150 159-327 148-313 (374)
135 PRK14902 16S rRNA methyltransf 99.2 1.8E-10 3.9E-15 110.1 14.2 113 156-272 245-382 (444)
136 COG0220 Predicted S-adenosylme 99.2 1E-10 2.2E-15 100.7 11.0 102 162-271 49-166 (227)
137 PF03291 Pox_MCEL: mRNA cappin 99.2 9.1E-11 2E-15 107.0 10.8 112 161-273 62-190 (331)
138 PF11968 DUF3321: Putative met 99.2 2E-10 4.3E-15 96.5 11.9 129 163-327 53-192 (219)
139 PRK00811 spermidine synthase; 99.2 1.3E-10 2.7E-15 104.4 11.4 110 160-269 75-191 (283)
140 KOG3178 Hydroxyindole-O-methyl 99.2 4.6E-10 9.9E-15 100.5 13.5 154 162-327 178-342 (342)
141 smart00650 rADc Ribosomal RNA 99.2 5.3E-10 1.2E-14 92.8 12.2 103 157-269 9-113 (169)
142 PRK03612 spermidine synthase; 99.2 3.2E-10 7E-15 110.1 12.2 133 160-310 296-438 (521)
143 KOG2940 Predicted methyltransf 99.1 4.5E-11 9.8E-16 100.0 5.2 147 161-314 72-225 (325)
144 TIGR00417 speE spermidine synt 99.1 1E-09 2.2E-14 98.0 13.9 110 160-269 71-186 (270)
145 PRK13168 rumA 23S rRNA m(5)U19 99.1 2.3E-09 5.1E-14 102.4 16.8 132 157-320 293-428 (443)
146 PLN02781 Probable caffeoyl-CoA 99.1 4E-10 8.6E-15 98.4 10.0 109 157-270 64-179 (234)
147 PLN02672 methionine S-methyltr 99.1 1.7E-09 3.7E-14 111.1 15.4 132 162-316 119-303 (1082)
148 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.1E-09 2.4E-14 110.1 13.0 130 160-314 537-678 (702)
149 KOG1975 mRNA cap methyltransfe 99.1 3.3E-10 7.2E-15 99.5 7.8 113 160-273 116-241 (389)
150 PLN02366 spermidine synthase 99.1 2E-09 4.4E-14 97.3 12.7 110 160-269 90-206 (308)
151 COG2521 Predicted archaeal met 99.1 7.6E-10 1.6E-14 93.1 8.6 153 157-328 130-287 (287)
152 PRK15128 23S rRNA m(5)C1962 me 99.1 1.1E-09 2.4E-14 102.4 10.7 109 160-270 219-340 (396)
153 KOG2899 Predicted methyltransf 99.1 2.1E-09 4.5E-14 91.0 11.2 147 161-313 58-254 (288)
154 PF07942 N2227: N2227-like pro 99.0 8.1E-09 1.8E-13 90.8 14.8 148 160-316 55-242 (270)
155 COG1041 Predicted DNA modifica 99.0 5.5E-09 1.2E-13 94.0 13.9 129 156-316 192-330 (347)
156 PF01739 CheR: CheR methyltran 99.0 3E-09 6.5E-14 89.9 11.4 109 161-269 31-175 (196)
157 PRK03522 rumB 23S rRNA methylu 99.0 8.8E-09 1.9E-13 94.1 14.7 102 160-269 172-274 (315)
158 PHA03412 putative methyltransf 99.0 4.2E-09 9.1E-14 90.4 10.7 95 161-264 49-158 (241)
159 COG4122 Predicted O-methyltran 99.0 3.5E-09 7.6E-14 90.2 10.0 112 157-273 55-170 (219)
160 PRK01544 bifunctional N5-gluta 99.0 3.4E-09 7.4E-14 102.5 10.6 103 160-270 346-463 (506)
161 PRK10611 chemotaxis methyltran 98.9 4.8E-09 1E-13 93.6 10.1 108 162-269 116-262 (287)
162 PLN02476 O-methyltransferase 98.9 7.6E-09 1.6E-13 91.6 11.0 110 157-271 114-230 (278)
163 PF10294 Methyltransf_16: Puta 98.9 9.3E-09 2E-13 85.6 10.7 114 159-273 43-160 (173)
164 PF01596 Methyltransf_3: O-met 98.9 4.9E-09 1.1E-13 89.3 9.0 109 158-271 42-157 (205)
165 TIGR00479 rumA 23S rRNA (uraci 98.9 1.8E-08 4E-13 96.0 13.7 105 157-269 288-396 (431)
166 PF03141 Methyltransf_29: Puta 98.9 1.1E-09 2.4E-14 102.2 5.0 126 163-313 119-250 (506)
167 PRK10909 rsmD 16S rRNA m(2)G96 98.9 1.7E-08 3.6E-13 85.7 11.6 106 161-271 53-161 (199)
168 KOG1331 Predicted methyltransf 98.9 5.6E-09 1.2E-13 90.8 7.7 100 160-272 44-146 (293)
169 KOG1269 SAM-dependent methyltr 98.9 8.6E-09 1.9E-13 94.8 8.4 111 160-273 109-219 (364)
170 TIGR02085 meth_trns_rumB 23S r 98.9 5.2E-08 1.1E-12 91.0 13.8 102 160-269 232-334 (374)
171 PRK14896 ksgA 16S ribosomal RN 98.8 1.9E-08 4.1E-13 89.3 9.5 76 157-241 25-100 (258)
172 PF01170 UPF0020: Putative RNA 98.8 2.2E-08 4.8E-13 83.7 9.2 108 159-269 26-150 (179)
173 COG1352 CheR Methylase of chem 98.8 8.4E-08 1.8E-12 84.6 12.7 108 162-269 97-241 (268)
174 KOG1499 Protein arginine N-met 98.8 1.8E-08 3.9E-13 90.3 8.5 103 160-266 59-164 (346)
175 PF05185 PRMT5: PRMT5 arginine 98.8 8.9E-08 1.9E-12 90.9 13.4 102 161-266 186-294 (448)
176 PRK11727 23S rRNA mA1618 methy 98.8 1.3E-07 2.7E-12 85.8 13.6 80 161-242 114-199 (321)
177 COG2263 Predicted RNA methylas 98.8 3.8E-08 8.2E-13 80.8 9.1 119 160-314 44-166 (198)
178 PRK00274 ksgA 16S ribosomal RN 98.8 2.4E-08 5.3E-13 89.2 8.5 75 157-239 38-112 (272)
179 PLN02589 caffeoyl-CoA O-methyl 98.8 3.5E-08 7.7E-13 86.3 9.0 108 157-269 75-190 (247)
180 KOG2904 Predicted methyltransf 98.8 1E-07 2.2E-12 82.3 11.4 109 161-271 148-287 (328)
181 COG0421 SpeE Spermidine syntha 98.7 1.7E-07 3.8E-12 83.4 12.9 106 162-269 77-190 (282)
182 PTZ00338 dimethyladenosine tra 98.7 5E-08 1.1E-12 87.8 9.0 77 157-239 32-108 (294)
183 TIGR00755 ksgA dimethyladenosi 98.7 1.4E-07 3E-12 83.6 11.5 74 157-239 25-101 (253)
184 KOG3191 Predicted N6-DNA-methy 98.7 1.9E-06 4E-11 70.2 16.6 130 157-313 39-190 (209)
185 KOG1661 Protein-L-isoaspartate 98.7 7E-08 1.5E-12 80.2 8.6 106 159-270 80-194 (237)
186 PLN02823 spermine synthase 98.7 1.2E-07 2.6E-12 86.7 10.7 109 160-269 102-220 (336)
187 KOG2915 tRNA(1-methyladenosine 98.7 1.1E-06 2.4E-11 75.9 15.1 130 156-314 100-233 (314)
188 COG3963 Phospholipid N-methylt 98.6 4.2E-07 9.2E-12 72.9 10.9 109 156-272 43-159 (194)
189 PRK04338 N(2),N(2)-dimethylgua 98.6 2E-07 4.3E-12 87.0 10.5 101 162-269 58-158 (382)
190 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 4.4E-08 9.5E-13 85.7 5.5 159 160-327 55-256 (256)
191 PF02527 GidB: rRNA small subu 98.6 3E-07 6.5E-12 76.9 10.0 98 164-269 51-148 (184)
192 PRK04148 hypothetical protein; 98.6 4.9E-07 1.1E-11 71.0 10.5 96 160-273 15-113 (134)
193 TIGR00095 RNA methyltransferas 98.6 5.2E-07 1.1E-11 76.1 11.5 106 161-270 49-160 (189)
194 PRK05031 tRNA (uracil-5-)-meth 98.6 1.3E-06 2.7E-11 81.4 14.2 124 163-320 208-347 (362)
195 KOG3987 Uncharacterized conser 98.6 2E-08 4.3E-13 83.1 1.9 136 161-313 112-257 (288)
196 TIGR02143 trmA_only tRNA (urac 98.6 1.6E-06 3.5E-11 80.3 14.2 97 163-269 199-311 (353)
197 PF02475 Met_10: Met-10+ like- 98.6 3.1E-07 6.6E-12 77.8 8.4 100 160-266 100-199 (200)
198 PRK00536 speE spermidine synth 98.5 7.4E-07 1.6E-11 78.5 10.9 103 157-269 68-171 (262)
199 COG0500 SmtA SAM-dependent met 98.5 1.7E-06 3.6E-11 69.6 12.4 103 165-273 52-159 (257)
200 PF04672 Methyltransf_19: S-ad 98.5 1E-06 2.2E-11 77.1 11.3 144 161-313 68-233 (267)
201 PRK11933 yebU rRNA (cytosine-C 98.5 1.2E-06 2.7E-11 83.6 12.9 113 158-273 110-246 (470)
202 TIGR00478 tly hemolysin TlyA f 98.5 7.6E-07 1.6E-11 77.0 10.2 131 160-314 74-215 (228)
203 KOG1500 Protein arginine N-met 98.5 7.8E-07 1.7E-11 78.9 9.5 105 160-269 176-282 (517)
204 PF04816 DUF633: Family of unk 98.5 5.4E-06 1.2E-10 70.6 13.6 120 165-314 1-122 (205)
205 COG4627 Uncharacterized protei 98.4 6.8E-08 1.5E-12 76.3 1.2 59 215-273 30-90 (185)
206 PF01564 Spermine_synth: Sperm 98.4 8.1E-07 1.8E-11 78.1 8.1 112 159-270 74-192 (246)
207 KOG3420 Predicted RNA methylas 98.4 3.3E-07 7.1E-12 71.7 4.6 77 160-241 47-123 (185)
208 COG1092 Predicted SAM-dependen 98.4 2E-06 4.4E-11 79.8 10.4 111 160-272 216-339 (393)
209 TIGR03439 methyl_EasF probable 98.4 5E-06 1.1E-10 75.5 11.9 107 160-269 75-197 (319)
210 PF09243 Rsm22: Mitochondrial 98.4 2.6E-06 5.6E-11 76.2 9.7 107 161-273 33-143 (274)
211 PF01269 Fibrillarin: Fibrilla 98.4 3.9E-05 8.6E-10 65.1 16.0 147 157-326 69-226 (229)
212 COG0030 KsgA Dimethyladenosine 98.3 2.2E-06 4.7E-11 75.0 8.6 76 157-239 26-102 (259)
213 PF10672 Methyltrans_SAM: S-ad 98.3 3.5E-06 7.5E-11 75.2 9.5 110 160-271 122-240 (286)
214 COG2265 TrmA SAM-dependent met 98.3 8.1E-06 1.8E-10 77.2 12.4 101 155-269 287-396 (432)
215 KOG1663 O-methyltransferase [S 98.3 5.6E-06 1.2E-10 70.2 9.8 108 156-269 68-183 (237)
216 PRK00050 16S rRNA m(4)C1402 me 98.3 2.1E-06 4.5E-11 77.0 7.7 90 156-250 14-110 (296)
217 COG2520 Predicted methyltransf 98.3 1.8E-05 3.8E-10 72.1 13.2 128 160-310 187-314 (341)
218 COG4798 Predicted methyltransf 98.3 1.4E-05 3.1E-10 65.8 10.9 148 155-314 42-203 (238)
219 PF09445 Methyltransf_15: RNA 98.2 1.9E-06 4.1E-11 70.2 5.5 72 164-239 2-76 (163)
220 COG0144 Sun tRNA and rRNA cyto 98.2 3.6E-05 7.7E-10 71.4 14.6 127 155-284 150-303 (355)
221 PF02384 N6_Mtase: N-6 DNA Met 98.2 1.1E-05 2.4E-10 73.6 11.0 116 155-271 40-185 (311)
222 PF03059 NAS: Nicotianamine sy 98.2 1.3E-05 2.7E-10 71.0 10.7 106 162-269 121-230 (276)
223 KOG0820 Ribosomal RNA adenine 98.2 7.9E-06 1.7E-10 70.8 8.8 77 157-239 54-130 (315)
224 PF03602 Cons_hypoth95: Conser 98.2 4.9E-06 1.1E-10 69.7 7.0 109 160-272 41-156 (183)
225 PF01728 FtsJ: FtsJ-like methy 98.2 2.7E-06 5.9E-11 71.3 5.1 97 161-271 23-141 (181)
226 COG0357 GidB Predicted S-adeno 98.1 1.5E-05 3.2E-10 68.0 9.0 126 162-315 68-194 (215)
227 PF08123 DOT1: Histone methyla 98.1 5.5E-06 1.2E-10 70.6 6.3 112 157-270 38-159 (205)
228 COG0293 FtsJ 23S rRNA methylas 98.1 1.8E-05 3.8E-10 66.7 9.0 100 160-273 44-163 (205)
229 COG4262 Predicted spermidine s 98.1 7.3E-05 1.6E-09 67.4 12.9 143 161-326 289-450 (508)
230 PRK11783 rlmL 23S rRNA m(2)G24 98.1 3E-05 6.5E-10 78.3 11.6 110 161-272 190-350 (702)
231 KOG2798 Putative trehalase [Ca 98.1 4.1E-05 8.9E-10 67.7 10.6 147 161-315 150-336 (369)
232 TIGR00308 TRM1 tRNA(guanine-26 98.1 2.8E-05 6E-10 72.4 10.0 101 162-269 45-147 (374)
233 PRK11760 putative 23S rRNA C24 98.0 3.9E-05 8.4E-10 69.4 9.6 88 159-262 209-296 (357)
234 COG0116 Predicted N6-adenine-s 98.0 5.5E-05 1.2E-09 69.4 10.4 109 160-270 190-345 (381)
235 KOG3115 Methyltransferase-like 98.0 2.6E-05 5.6E-10 64.7 7.5 108 161-271 60-185 (249)
236 COG1889 NOP1 Fibrillarin-like 98.0 0.00078 1.7E-08 56.2 15.9 147 157-326 72-228 (231)
237 TIGR02987 met_A_Alw26 type II 98.0 5.2E-05 1.1E-09 74.2 10.3 76 161-239 31-119 (524)
238 PF13679 Methyltransf_32: Meth 97.9 8.8E-05 1.9E-09 59.5 9.8 106 160-273 24-135 (141)
239 KOG2352 Predicted spermine/spe 97.9 8.2E-05 1.8E-09 69.9 10.3 102 164-270 51-162 (482)
240 KOG3201 Uncharacterized conser 97.9 1.1E-05 2.4E-10 64.5 3.3 113 161-273 29-144 (201)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 9.3E-05 2E-09 66.5 9.7 113 157-272 81-222 (283)
242 PF00398 RrnaAD: Ribosomal RNA 97.9 6.1E-05 1.3E-09 67.0 8.4 95 157-261 26-123 (262)
243 TIGR01444 fkbM_fam methyltrans 97.9 6.6E-05 1.4E-09 60.1 7.8 59 164-225 1-59 (143)
244 COG0742 N6-adenine-specific me 97.9 0.00021 4.6E-09 59.3 10.9 109 160-271 42-156 (187)
245 COG2384 Predicted SAM-dependen 97.8 0.00082 1.8E-08 56.9 14.2 126 161-314 16-141 (226)
246 KOG1709 Guanidinoacetate methy 97.8 6.5E-05 1.4E-09 63.0 7.4 105 160-269 100-206 (271)
247 PRK11827 hypothetical protein; 97.8 8.7E-06 1.9E-10 54.1 1.7 44 58-110 6-49 (60)
248 PF05958 tRNA_U5-meth_tr: tRNA 97.8 4.8E-05 1E-09 70.5 7.1 65 155-225 191-255 (352)
249 COG3897 Predicted methyltransf 97.8 8.7E-05 1.9E-09 61.4 7.4 103 161-272 79-182 (218)
250 COG4076 Predicted RNA methylas 97.8 6.4E-05 1.4E-09 61.7 6.2 99 162-267 33-133 (252)
251 COG2835 Uncharacterized conser 97.8 1.5E-05 3.2E-10 52.4 1.9 44 58-110 6-49 (60)
252 COG1189 Predicted rRNA methyla 97.7 0.00085 1.8E-08 57.5 11.8 137 160-314 78-222 (245)
253 PF13578 Methyltransf_24: Meth 97.6 1.6E-05 3.6E-10 60.3 0.2 100 166-269 1-105 (106)
254 KOG2730 Methylase [General fun 97.6 6.6E-05 1.4E-09 63.2 3.4 99 161-263 94-196 (263)
255 TIGR00006 S-adenosyl-methyltra 97.5 0.00049 1.1E-08 62.0 8.6 89 156-248 15-110 (305)
256 KOG4589 Cell division protein 97.5 0.00081 1.8E-08 55.3 8.6 101 159-273 67-188 (232)
257 PF06962 rRNA_methylase: Putat 97.5 0.00063 1.4E-08 53.9 7.6 82 187-272 1-95 (140)
258 PF03141 Methyltransf_29: Puta 97.4 0.00071 1.5E-08 64.0 8.8 131 160-327 364-506 (506)
259 PF07091 FmrO: Ribosomal RNA m 97.4 0.0005 1.1E-08 59.6 7.2 145 160-322 104-249 (251)
260 KOG1122 tRNA and rRNA cytosine 97.3 0.002 4.3E-08 59.5 10.5 124 155-282 235-384 (460)
261 PF03269 DUF268: Caenorhabditi 97.3 0.00067 1.5E-08 54.5 6.2 101 162-273 2-115 (177)
262 KOG2187 tRNA uracil-5-methyltr 97.3 0.00023 5E-09 67.2 4.0 65 156-225 378-442 (534)
263 PF04989 CmcI: Cephalosporin h 97.2 0.00073 1.6E-08 57.1 6.2 107 159-270 30-148 (206)
264 PF03966 Trm112p: Trm112p-like 97.1 0.00025 5.5E-09 49.1 1.7 46 57-102 4-68 (68)
265 PLN02668 indole-3-acetate carb 97.1 0.015 3.3E-07 54.1 13.5 152 162-313 64-305 (386)
266 COG1064 AdhP Zn-dependent alco 97.1 0.0063 1.4E-07 55.6 10.7 98 157-271 162-261 (339)
267 PF05971 Methyltransf_10: Prot 97.0 0.0034 7.4E-08 56.3 8.2 81 162-244 103-189 (299)
268 PF03492 Methyltransf_7: SAM d 96.9 0.022 4.7E-07 52.5 12.7 152 161-312 16-248 (334)
269 PF01861 DUF43: Protein of unk 96.8 0.076 1.6E-06 46.0 14.8 133 161-317 44-179 (243)
270 COG1568 Predicted methyltransf 96.6 0.0069 1.5E-07 53.0 6.9 98 160-270 151-261 (354)
271 PF01795 Methyltransf_5: MraW 96.6 0.0041 8.9E-08 56.1 5.6 83 155-241 14-102 (310)
272 COG5459 Predicted rRNA methyla 96.6 0.0052 1.1E-07 55.5 6.0 109 161-273 113-229 (484)
273 KOG2793 Putative N2,N2-dimethy 96.5 0.03 6.4E-07 48.9 10.4 111 161-273 86-203 (248)
274 PRK09424 pntA NAD(P) transhydr 96.5 0.034 7.3E-07 54.0 11.3 101 159-270 162-286 (509)
275 TIGR00027 mthyl_TIGR00027 meth 96.4 0.1 2.3E-06 46.2 13.6 151 162-314 82-248 (260)
276 COG4301 Uncharacterized conser 96.4 0.33 7.1E-06 42.2 15.4 109 159-270 76-194 (321)
277 KOG2198 tRNA cytosine-5-methyl 96.4 0.07 1.5E-06 48.8 12.0 115 156-273 150-300 (375)
278 KOG1562 Spermidine synthase [A 96.3 0.012 2.6E-07 52.1 6.8 108 158-270 118-237 (337)
279 PRK10742 putative methyltransf 96.3 0.025 5.4E-07 49.3 8.7 86 157-244 82-176 (250)
280 KOG4058 Uncharacterized conser 96.3 0.021 4.5E-07 45.3 7.1 107 156-270 67-173 (199)
281 COG1063 Tdh Threonine dehydrog 96.2 0.078 1.7E-06 49.2 12.2 98 161-273 168-273 (350)
282 KOG0024 Sorbitol dehydrogenase 96.2 0.073 1.6E-06 47.9 10.8 103 158-273 166-277 (354)
283 cd08283 FDH_like_1 Glutathione 96.0 0.074 1.6E-06 50.0 11.1 104 158-270 181-307 (386)
284 COG0275 Predicted S-adenosylme 96.0 0.035 7.5E-07 49.5 8.1 82 155-240 17-104 (314)
285 PF07757 AdoMet_MTase: Predict 95.9 0.011 2.3E-07 44.3 3.9 32 161-194 58-89 (112)
286 COG3510 CmcI Cephalosporin hyd 95.8 0.031 6.8E-07 46.4 6.4 109 157-273 65-184 (237)
287 COG1198 PriA Primosomal protei 95.8 0.14 3E-06 51.8 12.2 108 163-273 484-604 (730)
288 PRK01747 mnmC bifunctional tRN 95.8 0.058 1.3E-06 54.5 9.8 127 161-314 57-225 (662)
289 PF10354 DUF2431: Domain of un 95.8 0.17 3.7E-06 41.6 10.8 125 168-317 3-153 (166)
290 KOG1596 Fibrillarin and relate 95.7 0.051 1.1E-06 46.8 7.4 105 157-271 152-263 (317)
291 cd08237 ribitol-5-phosphate_DH 95.6 0.18 4E-06 46.5 11.9 95 159-270 161-257 (341)
292 PF02005 TRM: N2,N2-dimethylgu 95.6 0.044 9.6E-07 51.2 7.7 105 161-271 49-156 (377)
293 PF06859 Bin3: Bicoid-interact 95.4 0.009 2E-07 45.0 1.9 80 232-314 1-90 (110)
294 PF13719 zinc_ribbon_5: zinc-r 95.4 0.0061 1.3E-07 36.6 0.8 35 60-98 2-36 (37)
295 COG0286 HsdM Type I restrictio 95.3 0.28 6.2E-06 47.6 12.4 142 129-272 144-329 (489)
296 PHA01634 hypothetical protein 95.2 0.19 4.1E-06 39.0 8.4 46 161-207 28-73 (156)
297 COG1867 TRM1 N2,N2-dimethylgua 95.1 0.12 2.6E-06 47.4 8.3 103 162-271 53-156 (380)
298 PRK09880 L-idonate 5-dehydroge 95.1 0.1 2.3E-06 48.1 8.2 99 160-270 168-267 (343)
299 TIGR00561 pntA NAD(P) transhyd 95.0 0.11 2.3E-06 50.5 8.2 97 160-267 162-282 (511)
300 PRK00420 hypothetical protein; 94.9 0.016 3.5E-07 43.9 1.9 30 61-100 24-53 (112)
301 PF05430 Methyltransf_30: S-ad 94.8 0.034 7.3E-07 43.4 3.6 88 214-328 31-124 (124)
302 KOG1099 SAM-dependent methyltr 94.8 0.05 1.1E-06 46.4 4.8 97 162-272 42-166 (294)
303 PF04445 SAM_MT: Putative SAM- 94.7 0.095 2.1E-06 45.4 6.5 80 163-244 77-163 (234)
304 TIGR01202 bchC 2-desacetyl-2-h 94.7 0.36 7.9E-06 43.8 10.6 88 161-270 144-232 (308)
305 PF10571 UPF0547: Uncharacteri 94.6 0.018 3.9E-07 31.5 1.2 24 62-98 2-25 (26)
306 PRK09678 DNA-binding transcrip 94.6 0.025 5.3E-07 39.3 2.0 50 60-110 1-52 (72)
307 COG1997 RPL43A Ribosomal prote 94.6 0.022 4.7E-07 40.6 1.7 30 59-97 34-63 (89)
308 PF02636 Methyltransf_28: Puta 94.5 0.081 1.8E-06 46.7 5.8 46 162-207 19-72 (252)
309 PF00107 ADH_zinc_N: Zinc-bind 94.5 0.15 3.3E-06 39.6 6.8 119 171-306 1-127 (130)
310 TIGR00595 priA primosomal prot 94.5 1 2.2E-05 44.0 13.8 104 163-274 262-383 (505)
311 KOG0822 Protein kinase inhibit 94.5 0.4 8.7E-06 46.0 10.4 106 162-271 368-480 (649)
312 PRK00398 rpoP DNA-directed RNA 94.5 0.029 6.2E-07 35.5 2.0 30 59-97 2-31 (46)
313 cd05188 MDR Medium chain reduc 94.4 0.68 1.5E-05 40.4 11.6 96 160-271 133-234 (271)
314 PF13717 zinc_ribbon_4: zinc-r 94.3 0.019 4.2E-07 34.2 0.9 34 60-97 2-35 (36)
315 PF14803 Nudix_N_2: Nudix N-te 94.3 0.023 5E-07 33.3 1.2 30 63-97 3-32 (34)
316 PRK05580 primosome assembly pr 94.3 0.98 2.1E-05 45.9 13.6 103 163-273 430-550 (679)
317 KOG2920 Predicted methyltransf 94.2 0.055 1.2E-06 47.8 3.8 106 161-269 116-234 (282)
318 COG1645 Uncharacterized Zn-fin 94.2 0.025 5.3E-07 43.9 1.4 28 59-97 27-54 (131)
319 PHA00626 hypothetical protein 94.1 0.034 7.3E-07 36.0 1.8 34 61-98 1-34 (59)
320 PF03514 GRAS: GRAS domain fam 93.8 1.9 4.1E-05 40.4 13.5 113 158-271 107-245 (374)
321 PF08274 PhnA_Zn_Ribbon: PhnA 93.7 0.038 8.3E-07 31.3 1.2 26 62-97 4-29 (30)
322 TIGR01206 lysW lysine biosynth 93.6 0.085 1.9E-06 34.5 3.0 31 60-97 2-32 (54)
323 KOG2352 Predicted spermine/spe 93.6 0.12 2.5E-06 49.2 5.0 121 161-285 295-432 (482)
324 PF08271 TF_Zn_Ribbon: TFIIB z 93.5 0.04 8.7E-07 34.3 1.3 29 61-97 1-29 (43)
325 cd00315 Cyt_C5_DNA_methylase C 93.5 0.27 5.8E-06 44.0 7.1 125 164-314 2-141 (275)
326 TIGR02822 adh_fam_2 zinc-bindi 93.3 0.95 2.1E-05 41.5 10.7 92 159-270 163-255 (329)
327 PRK14873 primosome assembly pr 93.3 1 2.2E-05 45.4 11.5 96 162-269 430-536 (665)
328 KOG1501 Arginine N-methyltrans 93.2 0.21 4.6E-06 46.7 6.0 100 163-265 68-171 (636)
329 COG0686 Ald Alanine dehydrogen 93.2 0.34 7.4E-06 43.5 7.0 101 161-269 167-268 (371)
330 PRK13699 putative methylase; P 93.2 0.24 5.3E-06 43.0 6.2 42 249-313 52-93 (227)
331 PRK10220 hypothetical protein; 93.2 0.069 1.5E-06 39.8 2.3 33 59-101 2-34 (111)
332 PRK11524 putative methyltransf 93.2 0.25 5.3E-06 44.5 6.4 46 160-207 207-252 (284)
333 cd08254 hydroxyacyl_CoA_DH 6-h 93.1 0.93 2E-05 41.2 10.4 95 159-270 163-264 (338)
334 PRK00464 nrdR transcriptional 93.0 0.054 1.2E-06 43.8 1.6 40 61-100 1-41 (154)
335 PRK13699 putative methylase; P 92.9 0.32 7E-06 42.2 6.5 46 160-207 162-207 (227)
336 PF01555 N6_N4_Mtase: DNA meth 92.8 0.23 5E-06 42.5 5.5 42 160-203 190-231 (231)
337 cd08239 THR_DH_like L-threonin 92.8 1.9 4.2E-05 39.4 11.9 97 158-270 160-263 (339)
338 PF11781 RRN7: RNA polymerase 92.7 0.056 1.2E-06 32.2 1.0 27 60-96 8-34 (36)
339 TIGR03366 HpnZ_proposed putati 92.4 2.7 5.8E-05 37.5 12.1 95 160-270 119-219 (280)
340 TIGR02098 MJ0042_CXXC MJ0042 f 92.4 0.049 1.1E-06 32.8 0.5 35 60-98 2-36 (38)
341 cd08230 glucose_DH Glucose deh 92.2 0.84 1.8E-05 42.2 8.7 93 160-270 171-270 (355)
342 TIGR00686 phnA alkylphosphonat 92.0 0.1 2.3E-06 38.8 2.0 31 61-101 3-33 (109)
343 PF08792 A2L_zn_ribbon: A2L zi 92.0 0.11 2.4E-06 30.2 1.7 30 59-98 2-32 (33)
344 PF11312 DUF3115: Protein of u 91.9 0.69 1.5E-05 41.7 7.3 111 161-271 86-244 (315)
345 PLN02586 probable cinnamyl alc 91.9 1.5 3.3E-05 40.7 10.1 95 160-269 182-278 (360)
346 PTZ00357 methyltransferase; Pr 91.9 1.2 2.5E-05 44.5 9.3 101 163-264 702-830 (1072)
347 PF11599 AviRa: RRNA methyltra 91.7 0.36 7.8E-06 41.0 5.0 111 159-269 49-214 (246)
348 COG3809 Uncharacterized protei 91.5 0.093 2E-06 36.5 1.1 37 60-103 1-37 (88)
349 TIGR03451 mycoS_dep_FDH mycoth 91.5 2 4.4E-05 39.7 10.5 97 159-270 174-277 (358)
350 COG4306 Uncharacterized protei 91.4 0.066 1.4E-06 40.8 0.3 45 58-102 37-83 (160)
351 KOG1088 Uncharacterized conser 91.3 0.1 2.2E-06 39.3 1.2 27 83-109 94-120 (124)
352 PF09862 DUF2089: Protein of u 91.3 0.092 2E-06 39.9 1.0 22 63-97 1-22 (113)
353 COG1565 Uncharacterized conser 91.3 0.6 1.3E-05 42.9 6.4 49 159-207 75-131 (370)
354 PF13240 zinc_ribbon_2: zinc-r 91.3 0.092 2E-06 27.8 0.7 22 62-96 1-22 (23)
355 cd08281 liver_ADH_like1 Zinc-d 91.2 1.8 3.9E-05 40.3 9.9 96 159-270 189-291 (371)
356 PF09297 zf-NADH-PPase: NADH p 91.1 0.14 3E-06 29.5 1.5 27 62-97 5-31 (32)
357 COG2933 Predicted SAM-dependen 91.1 1 2.2E-05 39.6 7.3 88 159-262 209-296 (358)
358 KOG2539 Mitochondrial/chloropl 91.1 1 2.3E-05 42.7 7.9 110 161-273 200-319 (491)
359 COG1656 Uncharacterized conser 91.1 0.094 2E-06 42.4 0.9 41 57-97 94-140 (165)
360 PF09538 FYDLN_acid: Protein o 91.0 0.14 3E-06 38.8 1.8 31 60-100 9-39 (108)
361 cd00401 AdoHcyase S-adenosyl-L 91.0 1 2.2E-05 42.7 7.9 90 160-270 200-290 (413)
362 PF14446 Prok-RING_1: Prokaryo 90.8 0.15 3.2E-06 33.2 1.5 26 61-97 6-31 (54)
363 PF03119 DNA_ligase_ZBD: NAD-d 90.8 0.15 3.2E-06 28.5 1.3 22 62-92 1-22 (28)
364 PF14205 Cys_rich_KTR: Cystein 90.5 0.15 3.3E-06 32.9 1.3 35 60-97 4-38 (55)
365 PRK00432 30S ribosomal protein 90.2 0.21 4.5E-06 32.1 1.8 30 58-97 18-47 (50)
366 KOG1253 tRNA methyltransferase 90.2 0.34 7.3E-06 46.1 3.9 106 160-271 108-218 (525)
367 KOG2671 Putative RNA methylase 90.1 0.27 5.8E-06 44.7 3.0 80 157-239 204-291 (421)
368 PLN02740 Alcohol dehydrogenase 90.0 3.2 6.9E-05 38.9 10.4 98 158-270 195-301 (381)
369 cd08232 idonate-5-DH L-idonate 89.8 3 6.6E-05 38.0 10.0 94 161-269 165-262 (339)
370 PF06677 Auto_anti-p27: Sjogre 89.7 0.21 4.6E-06 30.6 1.5 24 61-94 18-41 (41)
371 PRK05786 fabG 3-ketoacyl-(acyl 89.6 7 0.00015 33.5 11.6 104 161-271 4-137 (238)
372 COG3129 Predicted SAM-dependen 89.6 0.73 1.6E-05 39.7 5.0 83 160-244 77-165 (292)
373 COG3315 O-Methyltransferase in 89.5 5 0.00011 36.3 10.8 150 162-314 93-262 (297)
374 smart00659 RPOLCX RNA polymera 89.5 0.23 5E-06 31.0 1.6 29 60-98 2-30 (44)
375 PLN02178 cinnamyl-alcohol dehy 89.4 2.9 6.3E-05 39.2 9.6 95 160-270 177-274 (375)
376 PF01780 Ribosomal_L37ae: Ribo 89.1 0.14 3.1E-06 37.1 0.5 30 59-97 34-63 (90)
377 KOG1227 Putative methyltransfe 89.0 0.22 4.8E-06 44.3 1.6 95 161-263 194-289 (351)
378 KOG2651 rRNA adenine N-6-methy 88.8 0.92 2E-05 41.9 5.4 43 160-203 152-194 (476)
379 PF03604 DNA_RNApol_7kD: DNA d 88.7 0.3 6.5E-06 28.2 1.5 28 61-98 1-28 (32)
380 PF13248 zf-ribbon_3: zinc-rib 88.6 0.19 4.2E-06 27.4 0.7 23 61-96 3-25 (26)
381 smart00661 RPOL9 RNA polymeras 88.5 0.44 9.6E-06 30.7 2.4 34 62-102 2-35 (52)
382 TIGR00518 alaDH alanine dehydr 88.3 1.1 2.3E-05 42.1 5.8 101 161-269 166-267 (370)
383 PF14353 CpXC: CpXC protein 88.3 0.28 6E-06 38.4 1.7 40 61-100 2-51 (128)
384 PF01096 TFIIS_C: Transcriptio 88.3 0.19 4.2E-06 30.4 0.6 37 61-97 1-38 (39)
385 PRK10309 galactitol-1-phosphat 88.3 5.4 0.00012 36.6 10.5 96 159-270 158-261 (347)
386 PF04606 Ogr_Delta: Ogr/Delta- 88.1 0.25 5.4E-06 31.3 1.0 41 62-103 1-43 (47)
387 TIGR03655 anti_R_Lar restricti 88.1 0.37 8E-06 31.4 1.9 36 61-99 2-38 (53)
388 PF02153 PDH: Prephenate dehyd 88.1 1.2 2.5E-05 39.5 5.7 75 175-265 1-75 (258)
389 TIGR02300 FYDLN_acid conserved 88.0 0.31 6.7E-06 37.6 1.7 31 60-100 9-39 (129)
390 PF05711 TylF: Macrocin-O-meth 88.0 1.2 2.6E-05 39.1 5.6 109 160-271 73-214 (248)
391 PLN03154 putative allyl alcoho 87.9 5.9 0.00013 36.6 10.6 95 159-269 156-258 (348)
392 TIGR02819 fdhA_non_GSH formald 87.9 5.6 0.00012 37.5 10.5 103 159-270 183-300 (393)
393 TIGR03201 dearomat_had 6-hydro 87.9 7.7 0.00017 35.7 11.3 97 159-270 164-273 (349)
394 cd08245 CAD Cinnamyl alcohol d 87.7 6.2 0.00013 35.7 10.5 95 159-269 160-256 (330)
395 PF07191 zinc-ribbons_6: zinc- 87.7 0.29 6.2E-06 33.7 1.2 26 61-97 2-27 (70)
396 TIGR02825 B4_12hDH leukotriene 87.6 6.7 0.00014 35.6 10.6 95 158-269 135-237 (325)
397 PF00145 DNA_methylase: C-5 cy 87.5 6 0.00013 35.8 10.3 123 164-314 2-140 (335)
398 PRK08339 short chain dehydroge 87.5 12 0.00025 33.0 11.8 77 161-242 7-95 (263)
399 cd08285 NADP_ADH NADP(H)-depen 87.5 6.8 0.00015 36.0 10.7 96 159-269 164-266 (351)
400 PF02254 TrkA_N: TrkA-N domain 87.3 11 0.00023 28.4 10.6 86 170-270 4-97 (116)
401 PF13453 zf-TFIIB: Transcripti 87.2 0.19 4E-06 30.9 0.0 33 62-101 1-33 (41)
402 COG0287 TyrA Prephenate dehydr 87.1 3.1 6.7E-05 37.3 7.8 90 163-267 4-96 (279)
403 PLN02514 cinnamyl-alcohol dehy 86.9 7.2 0.00016 36.1 10.5 97 160-270 179-276 (357)
404 PLN02827 Alcohol dehydrogenase 86.8 4.6 9.9E-05 37.8 9.2 96 159-269 191-295 (378)
405 COG1062 AdhC Zn-dependent alco 86.6 7 0.00015 35.8 9.6 100 157-271 181-287 (366)
406 PRK08265 short chain dehydroge 86.5 7.5 0.00016 34.1 10.0 73 161-242 5-90 (261)
407 PTZ00255 60S ribosomal protein 86.4 0.35 7.5E-06 35.1 1.1 30 59-97 35-64 (90)
408 KOG3507 DNA-directed RNA polym 86.3 0.6 1.3E-05 30.6 2.0 33 55-97 15-47 (62)
409 PF05206 TRM13: Methyltransfer 86.3 1.9 4.2E-05 38.1 6.0 65 160-227 17-86 (259)
410 cd08255 2-desacetyl-2-hydroxye 86.1 6.9 0.00015 34.4 9.7 95 158-269 94-190 (277)
411 PF11899 DUF3419: Protein of u 86.1 1.2 2.6E-05 41.7 4.8 62 213-274 274-339 (380)
412 cd08234 threonine_DH_like L-th 86.0 7.5 0.00016 35.2 10.1 96 159-270 157-258 (334)
413 PF14740 DUF4471: Domain of un 85.9 1.8 3.9E-05 38.8 5.6 67 230-313 220-286 (289)
414 TIGR00280 L37a ribosomal prote 85.8 0.34 7.4E-06 35.2 0.8 30 59-97 34-63 (91)
415 PRK05854 short chain dehydroge 85.8 15 0.00032 33.3 11.8 78 161-242 13-103 (313)
416 PRK07109 short chain dehydroge 85.8 11 0.00024 34.6 11.1 76 161-242 7-95 (334)
417 PRK07806 short chain dehydroge 85.7 15 0.00033 31.6 11.4 103 161-269 5-134 (248)
418 COG0270 Dcm Site-specific DNA 85.6 12 0.00025 34.5 11.0 123 162-310 3-141 (328)
419 cd08233 butanediol_DH_like (2R 85.5 18 0.00038 33.2 12.4 98 159-271 170-274 (351)
420 PF02737 3HCDH_N: 3-hydroxyacy 85.4 0.89 1.9E-05 37.9 3.3 101 164-272 1-117 (180)
421 PRK11524 putative methyltransf 85.4 0.64 1.4E-05 41.8 2.6 55 215-269 8-80 (284)
422 smart00440 ZnF_C2C2 C2C2 Zinc 85.4 0.46 1E-05 29.0 1.1 36 62-97 2-38 (40)
423 PF01927 Mut7-C: Mut7-C RNAse 85.4 0.47 1E-05 38.2 1.5 40 59-98 90-135 (147)
424 cd05285 sorbitol_DH Sorbitol d 85.1 12 0.00026 34.2 11.0 95 158-269 159-265 (343)
425 PRK09072 short chain dehydroge 85.1 12 0.00026 32.7 10.6 77 161-244 4-92 (263)
426 COG1326 Uncharacterized archae 85.0 0.55 1.2E-05 38.9 1.7 37 59-99 5-42 (201)
427 cd08294 leukotriene_B4_DH_like 84.9 10 0.00022 34.2 10.4 94 159-269 141-241 (329)
428 PRK08324 short chain dehydroge 84.9 10 0.00022 38.6 11.2 103 161-270 421-558 (681)
429 PRK03976 rpl37ae 50S ribosomal 84.9 0.38 8.3E-06 34.9 0.7 30 59-97 35-64 (90)
430 KOG3924 Putative protein methy 84.7 3.6 7.7E-05 38.3 7.0 115 157-273 188-312 (419)
431 PRK12939 short chain dehydroge 84.7 8.2 0.00018 33.2 9.3 75 161-242 6-94 (250)
432 COG0677 WecC UDP-N-acetyl-D-ma 84.6 12 0.00026 35.1 10.3 95 163-269 10-128 (436)
433 PF02150 RNA_POL_M_15KD: RNA p 84.5 0.47 1E-05 28.0 0.8 31 62-100 3-33 (35)
434 cd08261 Zn_ADH7 Alcohol dehydr 84.2 11 0.00023 34.4 10.2 98 158-269 156-258 (337)
435 PF14354 Lar_restr_allev: Rest 84.2 0.77 1.7E-05 30.7 1.9 35 59-95 2-37 (61)
436 cd05278 FDH_like Formaldehyde 84.0 11 0.00023 34.4 10.2 96 159-269 165-267 (347)
437 PRK06701 short chain dehydroge 84.0 12 0.00026 33.5 10.2 104 161-270 45-182 (290)
438 COG1327 Predicted transcriptio 83.7 0.58 1.3E-05 37.2 1.3 44 61-104 1-45 (156)
439 PF11899 DUF3419: Protein of u 83.7 2.4 5.2E-05 39.8 5.6 50 155-206 29-78 (380)
440 cd08231 MDR_TM0436_like Hypoth 83.7 14 0.00031 34.0 10.9 93 161-269 177-280 (361)
441 COG3877 Uncharacterized protei 83.4 0.58 1.3E-05 34.6 1.1 26 59-97 5-30 (122)
442 cd08298 CAD2 Cinnamyl alcohol 83.3 16 0.00035 33.0 10.9 92 158-269 164-256 (329)
443 TIGR02818 adh_III_F_hyde S-(hy 83.1 14 0.0003 34.3 10.6 98 159-270 183-288 (368)
444 PF03811 Zn_Tnp_IS1: InsA N-te 83.0 1.1 2.3E-05 26.7 1.9 31 60-94 5-36 (36)
445 cd08242 MDR_like Medium chain 82.9 14 0.00031 33.2 10.4 93 158-269 152-245 (319)
446 cd05213 NAD_bind_Glutamyl_tRNA 82.9 8.8 0.00019 35.0 8.9 125 160-306 176-302 (311)
447 COG2888 Predicted Zn-ribbon RN 82.8 0.59 1.3E-05 30.8 0.8 33 59-95 26-58 (61)
448 PRK08267 short chain dehydroge 82.7 13 0.00029 32.3 9.9 73 163-243 2-88 (260)
449 COG1086 Predicted nucleoside-d 82.7 11 0.00024 36.9 9.7 83 160-246 248-339 (588)
450 COG1996 RPC10 DNA-directed RNA 82.7 0.67 1.5E-05 29.5 1.0 32 58-98 4-35 (49)
451 cd08300 alcohol_DH_class_III c 82.5 15 0.00033 34.1 10.6 97 159-270 184-289 (368)
452 cd03420 SirA_RHOD_Pry_redox Si 82.5 13 0.00028 25.4 8.4 59 246-326 10-68 (69)
453 smart00778 Prim_Zn_Ribbon Zinc 82.4 1.3 2.8E-05 26.5 2.1 30 61-95 4-33 (37)
454 TIGR02437 FadB fatty oxidation 82.1 7 0.00015 40.0 8.7 103 161-271 312-430 (714)
455 PRK07231 fabG 3-ketoacyl-(acyl 82.1 20 0.00043 30.8 10.6 75 161-242 4-91 (251)
456 TIGR00244 transcriptional regu 82.0 0.83 1.8E-05 36.3 1.6 43 61-103 1-44 (147)
457 smart00834 CxxC_CXXC_SSSS Puta 82.0 0.7 1.5E-05 28.0 0.9 30 60-95 5-34 (41)
458 PRK07576 short chain dehydroge 81.8 16 0.00035 32.0 10.1 74 161-240 8-94 (264)
459 PF07754 DUF1610: Domain of un 81.6 1.2 2.5E-05 23.9 1.5 9 86-94 15-23 (24)
460 cd08277 liver_alcohol_DH_like 81.5 13 0.00029 34.3 9.9 97 159-270 182-287 (365)
461 PF11253 DUF3052: Protein of u 81.5 20 0.00043 27.9 8.8 70 230-317 43-112 (127)
462 PRK08213 gluconate 5-dehydroge 81.5 16 0.00035 31.7 9.9 76 160-242 10-99 (259)
463 PRK12495 hypothetical protein; 81.4 0.9 1.9E-05 38.5 1.7 31 57-98 39-69 (226)
464 PF02719 Polysacc_synt_2: Poly 81.4 5 0.00011 36.2 6.5 73 171-246 6-91 (293)
465 COG1571 Predicted DNA-binding 81.4 0.89 1.9E-05 42.7 1.8 32 60-101 350-381 (421)
466 PRK07819 3-hydroxybutyryl-CoA 81.3 4 8.7E-05 36.7 6.0 101 163-271 6-123 (286)
467 PLN00203 glutamyl-tRNA reducta 81.2 7.1 0.00015 38.3 8.0 130 161-305 265-397 (519)
468 PF10083 DUF2321: Uncharacteri 81.2 0.73 1.6E-05 36.8 1.0 50 59-108 38-89 (158)
469 PRK07326 short chain dehydroge 81.1 25 0.00055 29.9 10.9 75 161-243 5-93 (237)
470 PRK06181 short chain dehydroge 81.0 16 0.00035 31.8 9.7 73 163-242 2-88 (263)
471 cd08301 alcohol_DH_plants Plan 80.9 14 0.0003 34.2 9.7 97 159-270 185-290 (369)
472 PRK11730 fadB multifunctional 80.9 7.5 0.00016 39.8 8.4 101 163-271 314-430 (715)
473 PF01488 Shikimate_DH: Shikima 80.9 3.8 8.2E-05 32.3 5.1 123 159-302 9-134 (135)
474 PRK06500 short chain dehydroge 80.9 27 0.0006 29.9 11.1 73 161-242 5-90 (249)
475 PRK07502 cyclohexadienyl dehyd 80.8 7.5 0.00016 35.2 7.7 90 163-267 7-98 (307)
476 PF07282 OrfB_Zn_ribbon: Putat 80.8 1.1 2.3E-05 30.9 1.6 28 61-97 29-56 (69)
477 PRK07417 arogenate dehydrogena 80.8 7 0.00015 34.9 7.4 84 164-265 2-87 (279)
478 PRK00299 sulfur transfer prote 80.8 18 0.00038 25.7 8.2 57 246-324 20-76 (81)
479 TIGR01053 LSD1 zinc finger dom 80.6 1.3 2.8E-05 25.3 1.7 27 61-96 2-28 (31)
480 PRK05872 short chain dehydroge 80.6 13 0.00029 33.2 9.2 76 161-243 8-96 (296)
481 PF01206 TusA: Sulfurtransfera 80.6 6.8 0.00015 26.8 5.7 59 246-326 11-69 (70)
482 TIGR00936 ahcY adenosylhomocys 80.5 8.1 0.00018 36.6 7.9 89 160-269 193-282 (406)
483 COG1779 C4-type Zn-finger prot 80.5 0.83 1.8E-05 38.1 1.2 41 57-97 11-53 (201)
484 cd08238 sorbose_phosphate_red 80.5 23 0.00049 33.5 11.1 102 159-268 173-287 (410)
485 smart00531 TFIIE Transcription 80.3 0.68 1.5E-05 37.3 0.6 38 57-97 96-133 (147)
486 TIGR00373 conserved hypothetic 80.2 0.68 1.5E-05 37.8 0.5 32 57-96 106-137 (158)
487 PRK05476 S-adenosyl-L-homocyst 80.1 7.4 0.00016 37.1 7.5 88 161-270 211-300 (425)
488 cd08236 sugar_DH NAD(P)-depend 80.1 23 0.0005 32.2 10.8 94 159-269 157-258 (343)
489 PRK06035 3-hydroxyacyl-CoA deh 79.9 7.1 0.00015 35.1 7.2 41 163-205 4-46 (291)
490 PRK07814 short chain dehydroge 79.7 30 0.00066 30.1 11.1 75 161-241 9-96 (263)
491 PRK09242 tropinone reductase; 79.5 40 0.00086 29.2 11.7 78 161-242 8-98 (257)
492 PRK06266 transcription initiat 79.4 0.77 1.7E-05 38.2 0.7 32 57-96 114-145 (178)
493 PF05050 Methyltransf_21: Meth 79.4 4.4 9.6E-05 32.5 5.2 38 167-204 1-42 (167)
494 PRK13394 3-hydroxybutyrate deh 79.2 23 0.0005 30.7 10.1 78 161-244 6-96 (262)
495 cd08295 double_bond_reductase_ 79.2 16 0.00035 33.3 9.4 99 158-269 148-251 (338)
496 PF09986 DUF2225: Uncharacteri 79.0 1.4 3.1E-05 37.8 2.2 11 60-70 5-15 (214)
497 COG3677 Transposase and inacti 79.0 1.2 2.7E-05 34.9 1.7 42 59-104 29-70 (129)
498 COG4640 Predicted membrane pro 78.9 0.99 2.1E-05 41.6 1.2 29 60-101 1-29 (465)
499 PRK08177 short chain dehydroge 78.9 19 0.0004 30.6 9.3 68 163-241 2-80 (225)
500 PRK05808 3-hydroxybutyryl-CoA 78.5 10 0.00022 33.9 7.7 98 164-269 5-118 (282)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.96 E-value=1.2e-27 Score=205.59 Aligned_cols=188 Identities=24% Similarity=0.331 Sum_probs=154.8
Q ss_pred CchHHHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 128 SPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
|+.+|+..++.|++.+... +...+|.+|||+|||||.++..+++..+..+|+|+|+|+.|++.|+++...
T Consensus 28 n~~~S~g~~~~Wr~~~i~~----------~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 28 NDLMSFGLHRLWRRALISL----------LGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred cccccCcchHHHHHHHHHh----------hCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc
Confidence 6788999999999998854 445589999999999999999999997688999999999999999999987
Q ss_pred cCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCC-c-chhhHHHH
Q 020307 208 DNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-T-SLTGRVLR 285 (328)
Q Consensus 208 ~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~-~~~~~~~~ 285 (328)
.+ ..++.|+.+|++++||++++||+|++.++|++++|+.++|+|+.|+|||||++++.+...+... . ......+.
T Consensus 98 ~~---~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~ 174 (238)
T COG2226 98 KG---VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYF 174 (238)
T ss_pred cC---ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHH
Confidence 66 3449999999999999999999999999999999999999999999999999999998875221 1 11111111
Q ss_pred H-------------------hhhccCCCCCHHHHHHHHHHCCCeEEE--EEEeCcEEEEEEeCC
Q 020307 286 E-------------------RILQNYNYLTEEEIEDLCTSCGLTNYT--SKVQQSFIMFAAQKP 328 (328)
Q Consensus 286 ~-------------------~~~~~~~~~~~~~l~~ll~~~Gf~~v~--~~~~~~~~~~~a~k~ 328 (328)
. .......+.+.+++..+++++||+.+. ....+...++.+.|+
T Consensus 175 ~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 175 KYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238 (238)
T ss_pred HhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence 1 111344578899999999999999776 344566688888875
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.96 E-value=9.1e-29 Score=214.70 Aligned_cols=187 Identities=27% Similarity=0.448 Sum_probs=94.3
Q ss_pred CchHHHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHH
Q 020307 128 SPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIK 206 (328)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~ 206 (328)
|..+++..++.|++..... +...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|++++.
T Consensus 24 n~~ls~g~~~~wr~~~~~~----------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~ 93 (233)
T PF01209_consen 24 NDLLSFGQDRRWRRKLIKL----------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK 93 (233)
T ss_dssp -------------SHHHHH----------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHhc----------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH
Confidence 5678999999999977642 55677889999999999999999886 556799999999999999999998
Q ss_pred hcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCC-----------
Q 020307 207 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS----------- 275 (328)
Q Consensus 207 ~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~----------- 275 (328)
..+ ..++.++++|++++|+++++||+|++.+++++++|+.+.|+|+.|+|||||++++.++..+..
T Consensus 94 ~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~ 170 (233)
T PF01209_consen 94 REG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYF 170 (233)
T ss_dssp HTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--
T ss_pred hhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeee
Confidence 765 459999999999999999999999999999999999999999999999999999999887622
Q ss_pred --CcchhhHHHHHh-------hhccCCCCCHHHHHHHHHHCCCeEEEE--EEeCcEEEEEEeC
Q 020307 276 --STSLTGRVLRER-------ILQNYNYLTEEEIEDLCTSCGLTNYTS--KVQQSFIMFAAQK 327 (328)
Q Consensus 276 --~~~~~~~~~~~~-------~~~~~~~~~~~~l~~ll~~~Gf~~v~~--~~~~~~~~~~a~k 327 (328)
..|+++..+... ......+.+.+++.++++++||+.++. ...+...++++.|
T Consensus 171 ~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 171 KYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ---------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 111111111111 113445777899999999999997763 3355557777765
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.93 E-value=2.5e-24 Score=190.98 Aligned_cols=188 Identities=22% Similarity=0.308 Sum_probs=139.3
Q ss_pred hHHHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhc
Q 020307 130 FVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD 208 (328)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~ 208 (328)
..+...+..|++.... .+...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++....
T Consensus 52 ~~s~g~~~~~r~~~~~----------~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~ 121 (261)
T PLN02233 52 LLSLGQHRIWKRMAVS----------WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK 121 (261)
T ss_pred hhcCChhHHHHHHHHH----------HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh
Confidence 3444556677765543 244567889999999999999998886 45569999999999999998775421
Q ss_pred CcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCC-cchhhHHHHH-
Q 020307 209 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRE- 286 (328)
Q Consensus 209 ~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~- 286 (328)
......++.++++|++++|+++++||+|++.++++|++|+..+++++.|+|||||++++.++...... .+...+.+..
T Consensus 122 ~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~ 201 (261)
T PLN02233 122 AKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDN 201 (261)
T ss_pred hhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhh
Confidence 00014579999999999999999999999999999999999999999999999999999998764321 1111111110
Q ss_pred -----------------hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe--CcEEEEEEeC
Q 020307 287 -----------------RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ--QSFIMFAAQK 327 (328)
Q Consensus 287 -----------------~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~--~~~~~~~a~k 327 (328)
.......+++++++.++++++||+.++.... +...++++++
T Consensus 202 ~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 202 VVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred hhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 0012245789999999999999998875443 3336666653
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.92 E-value=5.1e-24 Score=179.75 Aligned_cols=176 Identities=20% Similarity=0.293 Sum_probs=146.6
Q ss_pred CchHHHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHhCCC------ceEEEEeCCHHHHHHH
Q 020307 128 SPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY------SGVVALDFSENMLRQC 201 (328)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~g~D~s~~~~~~a 201 (328)
|+.++...++.|++.+... +.+.++.++||++||||..+..+.+.-.. .+|+++|+|+.|+..+
T Consensus 77 ND~mSlGiHRlWKd~~v~~----------L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vg 146 (296)
T KOG1540|consen 77 NDAMSLGIHRLWKDMFVSK----------LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVG 146 (296)
T ss_pred HHHhhcchhHHHHHHhhhc----------cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHH
Confidence 6789999999999998865 77788899999999999999988887544 6899999999999999
Q ss_pred HHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC-CCc---
Q 020307 202 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-SST--- 277 (328)
Q Consensus 202 ~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~--- 277 (328)
+++..+.++....++.|+++|++++||++++||+.++.+.|..++|+.+.|+|++|+|||||++.+.+++.-. ...
T Consensus 147 kqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 147 KQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred HHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH
Confidence 9998776653344599999999999999999999999999999999999999999999999999999987652 111
Q ss_pred ---------chhhHHHHHhh-------hccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 278 ---------SLTGRVLRERI-------LQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 278 ---------~~~~~~~~~~~-------~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+.+++.+.... .....+.+.+++..+.+++||..+.
T Consensus 227 y~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 227 YDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 22222222211 1445578899999999999998876
No 5
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.92 E-value=3.3e-24 Score=191.73 Aligned_cols=170 Identities=23% Similarity=0.438 Sum_probs=124.1
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeecccCCC-----CccCCcchhhhccCCchHHHH
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLK-----DYTEVKPASTELFRSPFVSFL 134 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~-----~y~~~~~~~~~~~~~~~~~~~ 134 (328)
.|+||+|++++.... ..++|.++|+++..++||+++++..... +..++...++.
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~---------- 60 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRA---------- 60 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHH----------
Confidence 478999999995532 5899999888889999999999742221 22222222222
Q ss_pred HHhhHHhhhhcCCCCCcchh---hhcc---ccCCCeEEEEcCCcCHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHHH
Q 020307 135 YERGWRQNFNRSGFPGPDEE---EYFK---SAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFI 205 (328)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~---~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~ 205 (328)
+...+++.+... ..+. ..+..+|||+|||+|.++..+++..+. .+++|+|+|+.+++.|+++
T Consensus 61 --------fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~- 131 (272)
T PRK11088 61 --------FLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR- 131 (272)
T ss_pred --------HHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-
Confidence 222232222222 1111 124578999999999999999887542 3789999999999999875
Q ss_pred HhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 206 KQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 206 ~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+++.+..+|+.++|+++++||+|++... | ..++++.|+|||||++++.++...
T Consensus 132 -------~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------~-~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 132 -------YPQVTFCVASSHRLPFADQSLDAIIRIYA------P-CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred -------CCCCeEEEeecccCCCcCCceeEEEEecC------C-CCHHHHHhhccCCCEEEEEeCCCc
Confidence 56788999999999999999999998654 2 236899999999999999887643
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.89 E-value=8.9e-22 Score=172.01 Aligned_cols=183 Identities=25% Similarity=0.378 Sum_probs=140.0
Q ss_pred HHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCc
Q 020307 132 SFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT 210 (328)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~ 210 (328)
+......|++.... .+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+++++...+
T Consensus 26 ~~~~~~~~~~~~l~----------~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~- 94 (231)
T TIGR02752 26 SFQRHKKWRKDTMK----------RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG- 94 (231)
T ss_pred cCCchHHHHHHHHH----------hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-
Confidence 33445566655553 255667889999999999999999987 456799999999999999999887654
Q ss_pred CCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCC-------------c
Q 020307 211 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-------------T 277 (328)
Q Consensus 211 ~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------~ 277 (328)
..++.++.+|+..+++++++||+|++..+++|++++..+++++.++|||||++++.+....... .
T Consensus 95 --~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (231)
T TIGR02752 95 --LHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIM 172 (231)
T ss_pred --CCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChh
Confidence 4679999999998888888999999999999999999999999999999999998876543210 0
Q ss_pred chhhHHH-------HHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE--eCcEEEEEEeC
Q 020307 278 SLTGRVL-------RERILQNYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK 327 (328)
Q Consensus 278 ~~~~~~~-------~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~--~~~~~~~~a~k 327 (328)
+.....+ .........+++.++++++++++||++++... .+...+++++|
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 173 PLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 1100000 00112344678999999999999999876543 35557788776
No 7
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.89 E-value=1.7e-22 Score=182.97 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=120.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+++.+. +|+|+|+++++++.|+++....+. ..++.++++|++++++.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3567999999999999999998754 999999999999999987654322 347999999999988878899999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCC--cchhh-HHHHHhhh--c--cCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS--TSLTG-RVLRERIL--Q--NYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~-~~~~~~~~--~--~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+||||++|+..+++++.++|||||.+++.+++..... ..... ..+....+ . ...+++++++.++++++||+++
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999999999998764110 00001 11111111 1 2358899999999999999988
Q ss_pred EE
Q 020307 313 TS 314 (328)
Q Consensus 313 ~~ 314 (328)
+.
T Consensus 286 ~~ 287 (322)
T PLN02396 286 EM 287 (322)
T ss_pred EE
Confidence 75
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.88 E-value=1.2e-22 Score=171.76 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=121.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||.|.++..+++.|. +|+|+|+++.+++.|+.+..+.+ ..+.+.+..++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEEh
Confidence 3688999999999999999999986 99999999999999999887764 35778888888776666899999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhh-----HHHHHhhh----ccCCCCCHHHHHHHHHHCCCe
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG-----RVLRERIL----QNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
.||||++||..+++.+.+.+||||.+++++.++.. ..+.. +.+....+ ....++.++++..++..+|++
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~--ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL--KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH--HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 99999999999999999999999999999999762 22211 11222222 334578899999999999998
Q ss_pred EEEE
Q 020307 311 NYTS 314 (328)
Q Consensus 311 ~v~~ 314 (328)
+...
T Consensus 210 ~~~~ 213 (243)
T COG2227 210 IIDR 213 (243)
T ss_pred EEee
Confidence 7764
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.88 E-value=3.2e-21 Score=177.41 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=123.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++....++ ..++.++.+|+.++|+++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADALNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCcccCCCCCCCccEEEEC
Confidence 467899999999999999999875 45999999999999999998877653 467999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCC------CcchhhHHHHHhh--hccCCCCCHHHHHHHHHHCCCeE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS------STSLTGRVLRERI--LQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
.+++|++|+..+++++.++|||||++++.++..... ..+.....+.... .....+.+.+++.++++++||++
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~ 273 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD 273 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence 999999999999999999999999999988754211 1111111111111 12234568999999999999998
Q ss_pred EEEE
Q 020307 312 YTSK 315 (328)
Q Consensus 312 v~~~ 315 (328)
++..
T Consensus 274 v~~~ 277 (340)
T PLN02244 274 IKTE 277 (340)
T ss_pred eEee
Confidence 8754
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.86 E-value=2e-20 Score=166.10 Aligned_cols=153 Identities=14% Similarity=0.201 Sum_probs=122.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++... ..++.+..+|+...|+++++||+
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCCCCCCCeEE
Confidence 3556788899999999999999888763 45999999999999999987654 35799999999988888899999
Q ss_pred EEeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-hhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 236 VHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-ILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 236 i~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
|++..+++|++ ++..+++++.++|||||++++.++..... ..+ ...+... ......+.+.+++.++++++||+++
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI-ENW-DEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc-cCc-HHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 99999999997 78899999999999999999998765421 112 1112111 1123567799999999999999988
Q ss_pred EEEE
Q 020307 313 TSKV 316 (328)
Q Consensus 313 ~~~~ 316 (328)
+...
T Consensus 199 ~~~d 202 (263)
T PTZ00098 199 VAKD 202 (263)
T ss_pred eEEe
Confidence 8543
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.86 E-value=1.1e-21 Score=161.36 Aligned_cols=139 Identities=27% Similarity=0.418 Sum_probs=110.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.+. +++|+|+++.+++. . .......+....+.++++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccccchhhHhh
Confidence 45688999999999999999988876 99999999999887 1 233444444455566889999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-hh-hccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RI-LQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+.+|+|++|+..+|+++.++|||||++++.+++........ ...+.. .. ..|..+++.++++.+++++||++++
T Consensus 85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRS-FLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHH-HHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhH-HHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999864211111 111111 11 1678899999999999999999887
No 12
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.85 E-value=1.1e-19 Score=162.64 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=123.3
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.|+++....+ ..++.++.+|++.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEE
Confidence 4557889999999999988777665 555689999999999999999887765 458899999999999888899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
++..+++|++++..+++++.++|||||++++.+..........+..............++.+++.++++++||..++...
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 99999999999999999999999999999998865443222221111111111223457889999999999998876533
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.85 E-value=1e-19 Score=165.35 Aligned_cols=144 Identities=22% Similarity=0.311 Sum_probs=117.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++..+..+++++|+|+++++.|+++.. ..++.++.+|++++++++++||+|++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 5679999999999999988887555689999999999999998753 3467899999999998889999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+++|++++...++++.++|||||++++..+.... .+..+.+.. ....+.+.+++.++++++||+.++...
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---~~~~r~~~~---~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---FWLSRFFAD---VWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---hhHHHHhhh---hhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 9999999999999999999999999887654321 111111111 122356899999999999999887644
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.85 E-value=3.1e-20 Score=164.56 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=122.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+++++.|+++....++ ..++.++++|+.+++ +.+++||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~--~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGV--SDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 3467999999999999999999875 999999999999999999887654 467899999987764 55789999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-hhh---HHHHHhh-------hccCCCCCHHHHHHHHHHC
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTG---RVLRERI-------LQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~---~~~~~~~-------~~~~~~~~~~~l~~ll~~~ 307 (328)
..+++|+++|..+++++.++|||||++++..++....... .+. ....... ......++++++.++++++
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~a 198 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEA 198 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHC
Confidence 9999999999999999999999999999988775421100 000 0000000 0123468899999999999
Q ss_pred CCeEEEEEEeCcE
Q 020307 308 GLTNYTSKVQQSF 320 (328)
Q Consensus 308 Gf~~v~~~~~~~~ 320 (328)
||+++.......|
T Consensus 199 Gf~~~~~~gi~~~ 211 (255)
T PRK11036 199 GWQIMGKTGVRVF 211 (255)
T ss_pred CCeEeeeeeEEEE
Confidence 9999875443344
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.84 E-value=4.6e-20 Score=160.14 Aligned_cols=175 Identities=21% Similarity=0.222 Sum_probs=122.1
Q ss_pred hHHHHHHhhHHhhhhcCCCCCcchhhhcc-ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc
Q 020307 130 FVSFLYERGWRQNFNRSGFPGPDEEEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 208 (328)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 208 (328)
.+++..+..|++..... +.. ..++.+|||+|||+|.++..+++.. ..+|+|+|+|++|++.|+++
T Consensus 28 ~~s~g~~~~wr~~~~~~---------l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---- 93 (226)
T PRK05785 28 FISFNQDVRWRAELVKT---------ILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---- 93 (226)
T ss_pred hccCCCcHHHHHHHHHH---------HHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc----
Confidence 34444556677655432 111 1346799999999999999999885 34999999999999999863
Q ss_pred CcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC-CCCcc---------
Q 020307 209 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY-TSSTS--------- 278 (328)
Q Consensus 209 ~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~-~~~~~--------- 278 (328)
..++++|++.+|+++++||+|++..+++|++|+.++++++.|+|||.. .+.+...+ .....
T Consensus 94 -------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~~y~~~ 164 (226)
T PRK05785 94 -------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLSFYLRY 164 (226)
T ss_pred -------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHHHHHHH
Confidence 135789999999999999999999999999999999999999999942 22232221 11111
Q ss_pred ---hhhHHHHH-------hhhccCCCCCHHHHHHHHHHC-CCeEEEEEEeCcEEEEEEeC
Q 020307 279 ---LTGRVLRE-------RILQNYNYLTEEEIEDLCTSC-GLTNYTSKVQQSFIMFAAQK 327 (328)
Q Consensus 279 ---~~~~~~~~-------~~~~~~~~~~~~~l~~ll~~~-Gf~~v~~~~~~~~~~~~a~k 327 (328)
+++..+.. .......+.+.+++.++++++ ++...+....+...+++++|
T Consensus 165 ~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 165 IMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCceEEEEccccEEEEEEEee
Confidence 11111110 111334577889999999995 34333334456668888877
No 16
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.84 E-value=8.6e-20 Score=166.29 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=117.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++......+. ..++.++.+|++++|+ +++||+|
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHCCC-cCCcCEE
Confidence 4445678999999999999999999875 3599999999998765443222110 3479999999999988 7889999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-hhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++..+++|+.+|..+|++++++|||||.+++.+......... .....-...........+.+++..+++++||+.++..
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 999999999999999999999999999999987544322111 1011111112223345689999999999999988754
Q ss_pred E
Q 020307 316 V 316 (328)
Q Consensus 316 ~ 316 (328)
.
T Consensus 274 ~ 274 (322)
T PRK15068 274 D 274 (322)
T ss_pred e
Confidence 3
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.84 E-value=2.5e-19 Score=157.09 Aligned_cols=170 Identities=24% Similarity=0.347 Sum_probs=132.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..++..++ ..+++++|+++.+++.+++++...+. ..++.++.+|+..+++..++||+
T Consensus 47 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 47 LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL--SGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred hCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc--ccCeEEEecccccCCCCCCCccE
Confidence 3344678999999999999999998875 57999999999999999998765432 45789999999888877789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHH--------HH-----------hhhccCCCC
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVL--------RE-----------RILQNYNYL 295 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~--------~~-----------~~~~~~~~~ 295 (328)
|++..+++|+.++..+++++.++|+|||++++.+........ ......+ .. .......++
T Consensus 125 I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFP 204 (239)
T ss_pred EEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999998765432210 0000000 00 001113467
Q ss_pred CHHHHHHHHHHCCCeEEEEEE--eCcEEEEEEeCC
Q 020307 296 TEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQKP 328 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~--~~~~~~~~a~k~ 328 (328)
+.+++.++++++||+.+.... .+.+.+++|+||
T Consensus 205 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 205 DQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred CHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 899999999999999887644 366789999987
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=1.2e-19 Score=160.88 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=113.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++ .++.++.+|++.++ ++++||+|
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CCCCceEE
Confidence 44557789999999999999999998777799999999999999875 25789999998775 56799999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC-CCcchhhH-----HHHHhhh-----ccCCCCCHHHHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGR-----VLRERIL-----QNYNYLTEEEIEDLCT 305 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~-----~~~~~~~-----~~~~~~~~~~l~~ll~ 305 (328)
+++.++||++++..+++++.++|||||++++..+.... ........ .|..... ....+.+.+++.++|+
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998654321 11111010 0111110 1234578999999999
Q ss_pred HCCCeEEE
Q 020307 306 SCGLTNYT 313 (328)
Q Consensus 306 ~~Gf~~v~ 313 (328)
++||++..
T Consensus 174 ~aGf~v~~ 181 (255)
T PRK14103 174 DAGCKVDA 181 (255)
T ss_pred hCCCeEEE
Confidence 99997544
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.84 E-value=1.5e-19 Score=163.11 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=116.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++++|||||||+|.++..++..++ ..|+|+|+|+.++.+++....... ...++.+...+++++|.. .+||+|
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCCCC-CCcCEE
Confidence 3445688999999999999999988875 369999999999876543221111 045788888999888754 489999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchh-hHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT-GRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++.++++|+++|..+|++++++|||||.+++.+........... ..............++..++..+++++||+.++..
T Consensus 193 ~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 193 FSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred EEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999999998765432221110 01111122233456799999999999999999854
Q ss_pred E
Q 020307 316 V 316 (328)
Q Consensus 316 ~ 316 (328)
.
T Consensus 273 ~ 273 (314)
T TIGR00452 273 D 273 (314)
T ss_pred e
Confidence 3
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.83 E-value=3.1e-20 Score=151.72 Aligned_cols=143 Identities=20% Similarity=0.391 Sum_probs=111.7
Q ss_pred CCCeEEEEcCCcCHHHHHHH-HhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~ 237 (328)
++.+|||+|||+|.++..++ +.++..+++|+|+|+.+++.|+++++..+ ..++.|+++|+.+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence 56799999999999999999 55677899999999999999999988776 458999999999877 55 7999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH--Hhhh-ccC-CCCCHHHHHHHHHHCC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR--ERIL-QNY-NYLTEEEIEDLCTSCG 308 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~~~~~l~~ll~~~G 308 (328)
+..+++|+.++..+++++.++|++||++++.++.........+.+... .... .+. .. +.+++..+++++|
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG 152 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence 999999999999999999999999999999998722111111111111 1111 111 12 7888999999987
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.83 E-value=5.3e-20 Score=137.44 Aligned_cols=95 Identities=34% Similarity=0.579 Sum_probs=84.2
Q ss_pred EEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccC
Q 020307 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 245 (328)
Q Consensus 166 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~ 245 (328)
||+|||+|.++..+++. +..+++|+|+++++++.++++... .++.+..+|+..+|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 455999999999999999998753 35669999999999999999999999999999
Q ss_pred CChHHHHHHHHhcccCCcEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i 267 (328)
+++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999986
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.82 E-value=7.6e-19 Score=169.30 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=121.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++.... ..++.+..+|+..+++++++||+|
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCCCCCCEEEE
Confidence 344567899999999999999898874 559999999999999998876532 457899999999888888899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+++|++++..+++++.++|||||++++.++....... +.....+. ......++.+++.++++++||+++..
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK---QRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH---hcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 99999999999999999999999999999999876542211 11111111 12345788999999999999998864
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.81 E-value=5.7e-19 Score=153.53 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=118.2
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 242 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl 242 (328)
++|||||||+|.++..+++.++..+++|+|+|+++++.+++++...++ ..++.++..|+...|++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl--~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL--QGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC--CcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 379999999999999999987667999999999999999999887665 56889999999766654 589999999999
Q ss_pred ccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 243 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 243 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+|++++..+++++.++|||||++++.++.... ..+. . .........+.+++.++++++||++++...
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~-~-----~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANL-LSAI-E-----HEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEccccc-Cccc-c-----ccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 99999999999999999999999998875321 0000 0 001223367899999999999999987543
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.81 E-value=1.1e-18 Score=148.59 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=112.0
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ ..++.+...|+..++++ ++||
T Consensus 24 ~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~fD 97 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-GEYD 97 (197)
T ss_pred HhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-CCcC
Confidence 345555678999999999999999999875 99999999999999999887765 34688999999877764 5799
Q ss_pred eEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 235 AVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 235 ~i~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+|++..+++|++ +...+++++.++|||||++++.+....... +. .......++++++.+.++ ||+++
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~~--------~~~~~~~~~~~el~~~~~--~~~~~ 166 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-PC--------TVGFPFAFKEGELRRYYE--GWEMV 166 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-CC--------CCCCCCccCHHHHHHHhC--CCeEE
Confidence 999999999886 456899999999999999766543322110 10 001235578999999997 89887
Q ss_pred EE
Q 020307 313 TS 314 (328)
Q Consensus 313 ~~ 314 (328)
..
T Consensus 167 ~~ 168 (197)
T PRK11207 167 KY 168 (197)
T ss_pred Ee
Confidence 74
No 25
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.81 E-value=6.4e-19 Score=155.91 Aligned_cols=144 Identities=24% Similarity=0.316 Sum_probs=116.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++. ....++++|++.+|+++++||+|
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCCCCcEEEE
Confidence 3334567999999999999999988764 9999999999999998862 34568899999999988999999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh--hhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER--ILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+++.++++++|+..+++++.++|||||.++++++.... .+.+.+.+... .+....+++.+++..++...|++..
T Consensus 108 ~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~--~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 183 (251)
T PRK10258 108 WSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS--LPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHH 183 (251)
T ss_pred EECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc--hHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceee
Confidence 99999999999999999999999999999999876532 22222222221 1234568899999999999998643
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.81 E-value=2.8e-18 Score=150.24 Aligned_cols=154 Identities=29% Similarity=0.364 Sum_probs=121.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++.... ..++.+..+|+..+++++++||+
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~ 90 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFPDGSFDA 90 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCCCCCceE
Confidence 455678899999999999999999875 5679999999999999998873321 46799999999888888899999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCC-----CcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS-----STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
|++..+++|++++..+++++.++|||||.+++.++..... ......+............++..++.++++++||+
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 170 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLT 170 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999988643211 11121222222222334556678899999999998
Q ss_pred EEEE
Q 020307 311 NYTS 314 (328)
Q Consensus 311 ~v~~ 314 (328)
.+..
T Consensus 171 ~~~~ 174 (241)
T PRK08317 171 DIEV 174 (241)
T ss_pred ceeE
Confidence 7764
No 27
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.80 E-value=3.7e-19 Score=156.27 Aligned_cols=151 Identities=14% Similarity=0.187 Sum_probs=117.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|++++...+. ..++.++++|+..++++ .+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCCCC--CCCEEe
Confidence 356799999999999999998863 567999999999999999998876432 45789999999988764 589999
Q ss_pred eccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCC--CcchhhHHHH-----------------HhhhccCCCCC
Q 020307 238 AGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS--STSLTGRVLR-----------------ERILQNYNYLT 296 (328)
Q Consensus 238 ~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~~~~~~~~~-----------------~~~~~~~~~~~ 296 (328)
+..+++|+++ +..+++++.++|||||.+++.++..... ..+.+...+. .....+...++
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 9999999964 4789999999999999999998754311 1111111110 01113456789
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 020307 297 EEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~~v~~ 314 (328)
.+++..+++++||..++.
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 999999999999986653
No 28
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.80 E-value=3.5e-18 Score=148.20 Aligned_cols=166 Identities=22% Similarity=0.306 Sum_probs=126.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++... ..++.+..+|+.+.++++++||+
T Consensus 35 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 35 IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-----PLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-----CCCceEEecchhcCCCCCCcEEE
Confidence 33446789999999999999999988764 6899999999999999887651 45789999999988887789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHHHH--------h-----------hhccCCCC
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRE--------R-----------ILQNYNYL 295 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~--------~-----------~~~~~~~~ 295 (328)
|++..+++|++++..+++++.+.|+|||++++.+........ ....+.+.. . ......++
T Consensus 110 i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 110 VTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred EEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCC
Confidence 999999999999999999999999999999998865432110 000000000 0 01123467
Q ss_pred CHHHHHHHHHHCCCeEEEEEE--eCcEEEEEEeC
Q 020307 296 TEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK 327 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~--~~~~~~~~a~k 327 (328)
+.+++..+++++||+.+.... .+...+++++|
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 899999999999998766433 23335677764
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.80 E-value=1.5e-18 Score=152.92 Aligned_cols=151 Identities=14% Similarity=0.202 Sum_probs=116.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|..+..+++. .++.+++|+|+|+.|++.|++++...+. ..++.++++|+..+|++ .+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~v~~~~~d~~~~~~~--~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDVIEGDIRDIAIE--NASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEeCChhhCCCC--CCCEEe
Confidence 36789999999999999888873 4677999999999999999999877553 45799999999888764 599999
Q ss_pred eccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC--CCcchhhHHHHH-----------------hhhccCCCCC
Q 020307 238 AGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SSTSLTGRVLRE-----------------RILQNYNYLT 296 (328)
Q Consensus 238 ~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~ 296 (328)
++.+++|+++. ..+++++.++|||||.+++.+..... ...++....+.. .........+
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 99999999754 57899999999999999998855331 112211111110 0112334578
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 020307 297 EEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~~v~~ 314 (328)
+++..++|+++||+.+..
T Consensus 211 ~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 211 VETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHHcCchhHHH
Confidence 999999999999987663
No 30
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.80 E-value=2.5e-19 Score=152.44 Aligned_cols=144 Identities=26% Similarity=0.373 Sum_probs=113.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCC----CeEEEEecCCCCCCCCCccceEE
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
|.+|||+|||+|.++..|++.|. +|+|+|+++.+++.|+......-. ... ++.+.+.|.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~-~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPV-LEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCch-hccccceeeehhhcchhhc---ccccceee
Confidence 57899999999999999999987 999999999999999998443211 112 366777777765 34599999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch-----hhHHHHHhhh----ccCCCCCHHHHHHHHHHCC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL-----TGRVLRERIL----QNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~l~~ll~~~G 308 (328)
|..|+||+.||..+++.+.++|||||.+++++.++. ...| ..+......| ....+.+++++..+++..|
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt--~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT--ILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh--HHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999998875 1222 1222222222 2235889999999999999
Q ss_pred CeEEE
Q 020307 309 LTNYT 313 (328)
Q Consensus 309 f~~v~ 313 (328)
+++..
T Consensus 242 ~~v~~ 246 (282)
T KOG1270|consen 242 AQVND 246 (282)
T ss_pred cchhh
Confidence 98665
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=1.3e-18 Score=134.41 Aligned_cols=106 Identities=26% Similarity=0.414 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~i~~~ 239 (328)
|+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+. ..++.++++|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL--SDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT--TTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECccccCccc-CCCCCEEEEC
Confidence 57899999999999999999965677999999999999999999955443 68999999999 33333 4569999999
Q ss_pred c-ccccC---CChHHHHHHHHhcccCCcEEEEEE
Q 020307 240 A-ALHCW---PSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~-vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
. +++++ .+...+++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 345789999999999999999976
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.3e-17 Score=146.15 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=126.8
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...+|.+|||||||.|.++..+++.. +.+|+|+++|+++.+.+++++...|+ ..++++...|...+. +.||-
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccc---cccce
Confidence 3678899999999999999999999996 67999999999999999999999886 568999999987764 45999
Q ss_pred EEeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 236 VHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 236 i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
|++..++||+.. -..+++.+.++|+|||++++.+.............++.....+.-...+.+++.+..+++||.+..
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~ 220 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLD 220 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEeh
Confidence 999999999976 789999999999999999998877654222111233333333445566789999999999999887
Q ss_pred EEE
Q 020307 314 SKV 316 (328)
Q Consensus 314 ~~~ 316 (328)
...
T Consensus 221 ~~~ 223 (283)
T COG2230 221 VES 223 (283)
T ss_pred Hhh
Confidence 543
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.77 E-value=1.2e-17 Score=148.24 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=110.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+|.+|||||||.|.++..+++.. +.+|+|+.+|++..+.+++++...++ ..++.+...|..+++. +||.|
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~~~---~fD~I 131 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDLPG---KFDRI 131 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG------S-SEE
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeeccccCC---CCCEE
Confidence 567799999999999999999999994 45999999999999999999998886 6789999999987653 89999
Q ss_pred EeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcch----hhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 237 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL----TGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 237 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
++..++||+. +...+++++.++|||||++++............ ...++.....+.....+.+++...+++.||+
T Consensus 132 vSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~ 211 (273)
T PF02353_consen 132 VSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLE 211 (273)
T ss_dssp EEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-E
T ss_pred EEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEE
Confidence 9999999995 457999999999999999998776654211110 0122322222334566789999999999999
Q ss_pred EEEEEE
Q 020307 311 NYTSKV 316 (328)
Q Consensus 311 ~v~~~~ 316 (328)
+.....
T Consensus 212 v~~~~~ 217 (273)
T PF02353_consen 212 VEDVEN 217 (273)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887543
No 34
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.77 E-value=4.1e-18 Score=149.27 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=115.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+....|++|||||||+|+++..++.+++ ..|+|+|++.-...+.+-.-.-.+. ...+......++++|. .+.||+|
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~--~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ--DPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC--CccEEEcCcchhhccc-cCCcCEE
Confidence 4455789999999999999999999985 4699999998876664322111110 2233444456788886 7899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-hhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+|.+||.|..+|...|+++...|+|||.+++.+......... +.-..-+...+..+...|...+..+++++||+.++..
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 999999999999999999999999999999988765432221 1111112233345566799999999999999988853
No 35
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.77 E-value=1.7e-17 Score=145.40 Aligned_cols=140 Identities=25% Similarity=0.397 Sum_probs=115.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++. .+++.++.+|+...++++++||+|++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-------SENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-------CCCCeEEecchhhCCCCCCceeEEEEhh
Confidence 357899999999999999999988778999999999999988764 2368899999999988889999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+++|+.++..+++++.++|||||.+++.++.... ...+...+. .....+++.+++.++++.+ |..+.
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT--LHELRQSFG---QHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccC--HHHHHHHHH---HhccCCCCHHHHHHHHHHh-cCCcE
Confidence 9999999999999999999999999998876432 111111111 1345678999999999998 87655
No 36
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.76 E-value=2.5e-17 Score=146.26 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=112.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++ ..++.++.+|+..++ ++++||+|
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~~~fD~v 97 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PPQALDLI 97 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CCCCccEE
Confidence 444567899999999999999999987777999999999999999886 457889999997764 45689999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH------HHHhhh----ccCCCCCHHHHHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV------LRERIL----QNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~l~~ll~~ 306 (328)
+++.+++|++|+..+++++.++|||||.+++..+............. |..... ....+.+..++.+++.+
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAP 177 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999997654221111000110 111111 12345678899999999
Q ss_pred CCCeE
Q 020307 307 CGLTN 311 (328)
Q Consensus 307 ~Gf~~ 311 (328)
+|+.+
T Consensus 178 ~g~~v 182 (258)
T PRK01683 178 AACRV 182 (258)
T ss_pred CCCce
Confidence 99864
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.75 E-value=2.3e-17 Score=144.20 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=112.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.++.+|||+|||+|.++..+++. +++.+++|+|+|+++++.|+++.. ..++.+...+...++..+++||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~------~~~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR------RPGVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc------cCCCeEEEEecccccccCCCccE
Confidence 46679999999999998888753 556699999999999999988643 23567777777777777789999
Q ss_pred EEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchh---hHHHH------H-hhhccCCCCCHHHHHHH
Q 020307 236 VHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLT---GRVLR------E-RILQNYNYLTEEEIEDL 303 (328)
Q Consensus 236 i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~~------~-~~~~~~~~~~~~~l~~l 303 (328)
|+++.++||++++ ..+++++.++++ |.+++.+........... ...+. . ....+..+|+++++.++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence 9999999999986 479999999998 667776665541100000 00000 0 11244579999999999
Q ss_pred HHHCCCeEEEEEEeCcEEEE
Q 020307 304 CTSCGLTNYTSKVQQSFIMF 323 (328)
Q Consensus 304 l~~~Gf~~v~~~~~~~~~~~ 323 (328)
+++ ||++.. .....+.++
T Consensus 211 l~~-Gf~~~~-~~~~~~~~~ 228 (232)
T PRK06202 211 APQ-GWRVER-QWPFRYLLV 228 (232)
T ss_pred hhC-CCeEEe-ccceeeEEE
Confidence 999 999777 333344333
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.75 E-value=6.2e-17 Score=147.27 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=118.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++++|..+++++|. +.+++.+++++...++ ..++.++.+|+.+.+++ .+|+|
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~~~~--~~D~v 219 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESYP--EADAV 219 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc--cceEEEEecCccCCCCC--CCCEE
Confidence 4455678999999999999999999998889999997 7899999999887765 56899999999766654 36999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh------hhccCCCCCHHHHHHHHHHCC
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER------ILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~ll~~~G 308 (328)
++.+++|++.+. ..+|+++++.|||||++++.+........+... .+... ......+.+.+++.++|+++|
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aG 298 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFD-YLSHYILGAGMPFSVLGFKEQARYKEILESLG 298 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhh-HHHHHHHHcccccccccCCCHHHHHHHHHHcC
Confidence 999999998765 478999999999999999998755433333211 11111 011223455899999999999
Q ss_pred CeEEEE
Q 020307 309 LTNYTS 314 (328)
Q Consensus 309 f~~v~~ 314 (328)
|+.++.
T Consensus 299 f~~v~~ 304 (306)
T TIGR02716 299 YKDVTM 304 (306)
T ss_pred CCeeEe
Confidence 998863
No 39
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.74 E-value=2.5e-17 Score=135.17 Aligned_cols=152 Identities=22% Similarity=0.278 Sum_probs=116.9
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE-EEEecCCCCC-CCCCccce
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-FASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-~~~~~fD~ 235 (328)
.......|||||||+|..-..+-.. |..+|+++|+++.|-+.+.+.+.+.. ..++. |+.++.+++| ++++++|+
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred cccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCcccccCCeee
Confidence 3333457899999999987766533 45699999999999999999988764 56777 9999999998 88999999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhc--c----CCCCCHHHHHHHHHHCCC
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQ--N----YNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~l~~ll~~~Gf 309 (328)
|++..+|..+.||.+.|+++.|+|||||++++.++... ...++.+.+...... | -..++. +..+.|+++-|
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~--~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~f 225 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG--EYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAEF 225 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccc--cchHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhccc
Confidence 99999999999999999999999999999999998754 122223333332222 1 123444 45577899999
Q ss_pred eEEEEEE
Q 020307 310 TNYTSKV 316 (328)
Q Consensus 310 ~~v~~~~ 316 (328)
...+.+.
T Consensus 226 ~~~~~kr 232 (252)
T KOG4300|consen 226 SIDSCKR 232 (252)
T ss_pred ccchhhc
Confidence 8776433
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.74 E-value=2.7e-17 Score=142.53 Aligned_cols=145 Identities=20% Similarity=0.269 Sum_probs=110.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +++|+|+|+++++.|++++...+. ..++.+..+|+..++ ++||+|++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~~---~~fD~ii~~ 126 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRDV--AGNVEFEVNDLLSLC---GEFDIVVCM 126 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChhhCC---CCcCEEEEh
Confidence 4678999999999999999998754 999999999999999999876542 247999999998875 689999999
Q ss_pred cccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh-----hccCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-----LQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
.+++|++. +..+++++.+++++++++.+..... .... ...+.... ..+..+++.+++.++++++||+++
T Consensus 127 ~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219)
T TIGR02021 127 DVLIHYPASDMAKALGHLASLTKERVIFTFAPKTA---WLAF-LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219)
T ss_pred hHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCch---HHHH-HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence 99999864 4678999999998765555432111 1111 11111111 134567899999999999999988
Q ss_pred EEE
Q 020307 313 TSK 315 (328)
Q Consensus 313 ~~~ 315 (328)
...
T Consensus 203 ~~~ 205 (219)
T TIGR02021 203 REG 205 (219)
T ss_pred eee
Confidence 753
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=9.1e-17 Score=144.72 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=108.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+ .++.+...|+...++ +++||+|++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEEc
Confidence 3456999999999999999999875 99999999999999999887754 278888889877665 6789999999
Q ss_pred cccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 240 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 240 ~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
.+++|++ +...+++++.++|+|||++++........ .+ ........++++++++.++. |++++.
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~-~~--------~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTED-YP--------CPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc-CC--------CCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 9999986 44688999999999999977765433211 00 01123456899999999975 887764
No 42
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.73 E-value=2.7e-17 Score=135.48 Aligned_cols=141 Identities=19% Similarity=0.290 Sum_probs=112.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-CCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~i~ 237 (328)
.++.+|||+|||.|.++..|.+.- +.+..|+|++++.+..+.++ .+.++++|++. ++ |++++||.|+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCCCCccEEe
Confidence 468999999999999999999863 56899999999999888753 67899999954 44 8899999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH-HHh------------hhccCCCCCHHHHHHHH
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL-RER------------ILQNYNYLTEEEIEDLC 304 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~l~~ll 304 (328)
++.+|+++.+|..+|+|+.|+ |...+++.||....-..+ ..+ .++ ...+.+++|..+++++.
T Consensus 81 lsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~--~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 81 LSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRL--QLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred hHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHH--HHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 999999999999999999776 557788887753111111 111 111 12677899999999999
Q ss_pred HHCCCeEEEEEE
Q 020307 305 TSCGLTNYTSKV 316 (328)
Q Consensus 305 ~~~Gf~~v~~~~ 316 (328)
++.|+++++...
T Consensus 156 ~~~~i~I~~~~~ 167 (193)
T PF07021_consen 156 RELGIRIEERVF 167 (193)
T ss_pred HHCCCEEEEEEE
Confidence 999999998644
No 43
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.72 E-value=1.4e-16 Score=135.30 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=107.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++++. +|+|+|+|+.+++.++++....++ ++.+...|+...+++ ++||+|
T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~~----~v~~~~~d~~~~~~~-~~fD~I 98 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARENL----PLRTDAYDINAAALN-EDYDFI 98 (195)
T ss_pred hccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhCC----CceeEeccchhcccc-CCCCEE
Confidence 4444567999999999999999999865 999999999999999988776542 477788888766654 579999
Q ss_pred EeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+++|++ +...+++++.++|||||++++.+...... .+. .+.....++++++.++++ +|+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~~--------~~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YPC--------HMPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CCC--------CCCcCccCCHHHHHHHhC--CCeEEEe
Confidence 9999999985 34689999999999999977765432211 000 012234689999999996 5887764
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.72 E-value=4.4e-16 Score=130.73 Aligned_cols=124 Identities=21% Similarity=0.173 Sum_probs=104.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|..+..++...+..+|+|+|+++.+++.|+++.+..+ ..++.++.+|+.+++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 4789999999999999999987777899999999999999999998876 3459999999988876 77999999865
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+.++..+++++.++|||||++++..... ...++.++.+..|+.+.+..
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALKGRD-----------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------------hHHHHHHHHHhcCceEeeeE
Confidence 4578899999999999999999876321 23467888888899866643
No 45
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.72 E-value=1.5e-16 Score=139.09 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=115.8
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVH 237 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~ 237 (328)
..++.+|||+|||+|.++..+.+.+. +++++|+++.+++.+++++...+ ..+.+...|+...+ ...++||+|+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhhcCCCccEEE
Confidence 44678999999999999999988764 89999999999999998876543 35778888877654 3457899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch--hhH-HHHHh----hhccCCCCCHHHHHHHHHHCCCe
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGR-VLRER----ILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~-~~~~~----~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
+..+++|++++..+++.+.++|+|||.+++..+......... ... ..... ...+..+++.+++.++++++||+
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 120 CMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred EhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 999999999999999999999999999999876543111000 000 01111 11234678999999999999999
Q ss_pred EEEE
Q 020307 311 NYTS 314 (328)
Q Consensus 311 ~v~~ 314 (328)
++..
T Consensus 200 ~v~~ 203 (233)
T PRK05134 200 VQDI 203 (233)
T ss_pred Eeee
Confidence 8875
No 46
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.71 E-value=1.7e-16 Score=137.93 Aligned_cols=148 Identities=23% Similarity=0.298 Sum_probs=116.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~ 239 (328)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+ ..++.+...|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 467999999999999999988765 79999999999999999877643 22688888998776644 3789999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH-----HHHh----hhccCCCCCHHHHHHHHHHCCCe
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-----LRER----ILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
++++|+.++..+++++.++|+|||.+++.+++... ..+.... .... ......+++.+++.++++++||+
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~ 197 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP--KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR 197 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc--hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence 99999999999999999999999999988765431 1111111 1011 11233577899999999999999
Q ss_pred EEEEE
Q 020307 311 NYTSK 315 (328)
Q Consensus 311 ~v~~~ 315 (328)
+++..
T Consensus 198 i~~~~ 202 (224)
T TIGR01983 198 VKDVK 202 (224)
T ss_pred eeeee
Confidence 98754
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.70 E-value=4.8e-18 Score=128.38 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=66.5
Q ss_pred EEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEeccccc
Q 020307 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALH 243 (328)
Q Consensus 166 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~~~vl~ 243 (328)
||||||+|.++..+.+..+..+++|+|+|+.+++.+++++.... ..+......+..+.. ...++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999778899999999999998888887743 233444444433322 1125999999999999
Q ss_pred cCCChHHHHHHHHhcccCCcEE
Q 020307 244 CWPSPSNAVAEISRILRSGGVF 265 (328)
Q Consensus 244 h~~d~~~~l~~~~r~LkpgG~l 265 (328)
|++++..+++.+.++|||||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
No 48
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.70 E-value=2.4e-16 Score=129.60 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=96.6
Q ss_pred EEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 020307 189 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 189 ~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
+|+|+|++|++.|+++....+.....++.++++|+.++|+++++||+|++..+++|++|+..+|+++.|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532210134799999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCcc-hhh-----------HHHHH-------hhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 269 TFLRYTSSTS-LTG-----------RVLRE-------RILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 269 ~~~~~~~~~~-~~~-----------~~~~~-------~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++........ ... ..+.. .......+.+++++.++|+++||+.++..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 8875422111 000 00000 00122457899999999999999988743
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.69 E-value=2e-15 Score=127.55 Aligned_cols=127 Identities=19% Similarity=0.191 Sum_probs=102.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.+++++...+ ..++.++.+|+.. ++ .++||+|
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---~~~i~~~~~d~~~-~~-~~~~D~v 101 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---CGNIDIIPGEAPI-EL-PGKADAI 101 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCeEEEecCchh-hc-CcCCCEE
Confidence 45557889999999999999999998877899999999999999999887655 3478899888742 33 3579999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
++....++ ...+++.+.+.|+|||++++..... -+.+++.+++++.||+.++
T Consensus 102 ~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~----------------------~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 102 FIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL----------------------ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred EECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH----------------------hhHHHHHHHHHHCCCCcce
Confidence 99876543 5678999999999999998865321 1345778899999997655
No 50
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.68 E-value=9.3e-17 Score=121.80 Aligned_cols=95 Identities=32% Similarity=0.547 Sum_probs=79.9
Q ss_pred EEEEcCCcCHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec-c
Q 020307 165 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A 240 (328)
Q Consensus 165 vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~-~ 240 (328)
|||+|||+|..+..+.+.. +..+++|+|+|+++++.++++.... ..+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999885 3469999999999999999998764 348999999999999888899999995 5
Q ss_pred ccccCCCh--HHHHHHHHhcccCCc
Q 020307 241 ALHCWPSP--SNAVAEISRILRSGG 263 (328)
Q Consensus 241 vl~h~~d~--~~~l~~~~r~LkpgG 263 (328)
+++|+.+. ..+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 59998754 588999999999998
No 51
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.68 E-value=1.4e-15 Score=129.22 Aligned_cols=140 Identities=17% Similarity=0.242 Sum_probs=103.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-C-CCCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~~~~~fD~i~~ 238 (328)
++.+|||+|||+|.++..+++.. ..+++|+|+|+++++.+++ .++.++.+|+.+ + ++++++||+|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 56799999999999999887764 4478999999999988864 256788899865 4 367789999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-------------hhhccCCCCCHHHHHHHHH
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-------------RILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~ll~ 305 (328)
.++++|++|+..+++++.|+++ .+++..++.... ......+.. ....+.++++.+++.++++
T Consensus 82 ~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 82 SQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYW--RVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG 156 (194)
T ss_pred hhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHH--HHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence 9999999999999999988765 445554432110 000000000 0113456899999999999
Q ss_pred HCCCeEEEEEE
Q 020307 306 SCGLTNYTSKV 316 (328)
Q Consensus 306 ~~Gf~~v~~~~ 316 (328)
++||++++...
T Consensus 157 ~~Gf~v~~~~~ 167 (194)
T TIGR02081 157 ELNLRILDRAA 167 (194)
T ss_pred HCCCEEEEEEE
Confidence 99999988544
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=1.5e-15 Score=127.29 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..++..++..+|+|+|+|+.+++.++++++..+ ..++.++++|+.+++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhcc-ccCCccEEEehh
Confidence 4789999999999999999888777789999999999999998887765 457999999998874 367899999876
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.+....++.+.++|+|||++++..
T Consensus 118 ----~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 ----LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3456778899999999999999864
No 53
>PRK04266 fibrillarin; Provisional
Probab=99.67 E-value=5.9e-15 Score=127.63 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=105.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.+++.. ..++.++.+|+... ++. ++
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhcc-cc
Confidence 556688999999999999999999985456899999999999988776654 45788999998642 222 46
Q ss_pred cceEEeccccccCCChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 233 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
||+|++. +++|. .+++++.++|||||+++++.+...-.... .+...+ ++..++++++||
T Consensus 142 ~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-----------~~~~~~--~~~~~~l~~aGF 203 (226)
T PRK04266 142 VDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-----------DPKEIF--KEEIRKLEEGGF 203 (226)
T ss_pred CCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-----------CHHHHH--HHHHHHHHHcCC
Confidence 9999853 34443 45899999999999999965432100000 000111 344599999999
Q ss_pred eEEEEEEeCcE----EEEEEeC
Q 020307 310 TNYTSKVQQSF----IMFAAQK 327 (328)
Q Consensus 310 ~~v~~~~~~~~----~~~~a~k 327 (328)
++++.....++ +++++++
T Consensus 204 ~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 204 EILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred eEEEEEcCCCCcCCeEEEEEEc
Confidence 99987665544 6777665
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.67 E-value=7.5e-16 Score=134.40 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=105.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+. ..++.+..+|+. ..+++||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~---~~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGL--AGNITFEVGDLE---SLLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccCcEEEEcCch---hccCCcCEEEEc
Confidence 4678999999999999999998876 799999999999999998876542 257899999853 336789999999
Q ss_pred cccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-----hhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-----ILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
.+++|++++ ..+++++.+.++++++ +...+.. . .... ...+... ...+...++.+++.++++++||++.
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~~-~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRGSLI-FTFAPYT-P-LLAL-LHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCCeEE-EEECCcc-H-HHHH-HHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 999998765 4678888887654443 3322211 0 1111 1111111 1133457789999999999999988
Q ss_pred EEEE
Q 020307 313 TSKV 316 (328)
Q Consensus 313 ~~~~ 316 (328)
+...
T Consensus 211 ~~~~ 214 (230)
T PRK07580 211 RTER 214 (230)
T ss_pred eeee
Confidence 8543
No 55
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.66 E-value=7.9e-15 Score=123.01 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=107.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++ +++|+|+|+.+++.+++++...+ .++.++.+|+.+.+ .++||+|
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~~fD~V 86 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RGKFDVI 86 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CCcccEE
Confidence 3344567999999999999999999886 99999999999999999887643 36888999986654 4589999
Q ss_pred EeccccccCCCh---------------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCC
Q 020307 237 HAGAALHCWPSP---------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 295 (328)
Q Consensus 237 ~~~~vl~h~~d~---------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (328)
+++..+++.++. ..+++++.++|||||.+++..+...
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------------- 144 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------------- 144 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------------
Confidence 999887766542 4579999999999999999774321
Q ss_pred CHHHHHHHHHHCCCeEEEEEEeCcE
Q 020307 296 TEEEIEDLCTSCGLTNYTSKVQQSF 320 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~~~~~ 320 (328)
...++.+.+++.||+.......+.+
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecC
Confidence 2568889999999988776554443
No 56
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.66 E-value=3.5e-15 Score=134.95 Aligned_cols=147 Identities=19% Similarity=0.195 Sum_probs=102.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++....... ...++.|...|+..+ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 577999999999999999999865 9999999999999999987653110 024678888888654 578999999
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhc-----cCCCCCHHHHHHHHHHCCCeE
Q 020307 239 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQ-----NYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 239 ~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
..+++|+++.. .+++.+.+ +.+||.++...+. ...... .+.+....+. ...++++++++++++++||++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~--~~~~~~-l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPK--TLYYDI-LKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCc--chHHHH-HHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 99999998753 45666664 4565554433221 111111 1122221111 123458999999999999998
Q ss_pred EEEEE
Q 020307 312 YTSKV 316 (328)
Q Consensus 312 v~~~~ 316 (328)
.....
T Consensus 295 ~~~~~ 299 (315)
T PLN02585 295 ARREM 299 (315)
T ss_pred EEEEE
Confidence 87543
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.66 E-value=1.1e-15 Score=130.51 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCC--CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~~fD~i~ 237 (328)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+ ..++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 5679999999999999999988777799999999999999999887754 46799999999 7766 6778999999
Q ss_pred eccccccCC--------ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.....+.. ....+++++.++|||||++++.+..
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 876543221 1367899999999999999998743
No 58
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=9.1e-16 Score=147.97 Aligned_cols=143 Identities=21% Similarity=0.292 Sum_probs=111.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC--CCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.+++.... .+++.++++|+. .+++++++||
T Consensus 33 l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 33 LPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred cCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCCCCCCEE
Confidence 4444677999999999999999999865 999999999999987654221 457899999985 4677788999
Q ss_pred eEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 235 AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 235 ~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+|++..+++|+++. ..+++++.++|||||++++.+...... .... .......+.+...+.+++.++||...
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-----GDSK--RKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-----Cccc--ccCCCCeecChHHHHHHHHHheeccC
Confidence 99999999999874 689999999999999999987543211 0000 11123344567899999999999766
Q ss_pred E
Q 020307 313 T 313 (328)
Q Consensus 313 ~ 313 (328)
.
T Consensus 179 ~ 179 (475)
T PLN02336 179 D 179 (475)
T ss_pred C
Confidence 4
No 59
>PLN03075 nicotianamine synthase; Provisional
Probab=99.65 E-value=4.2e-15 Score=131.84 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=107.2
Q ss_pred CCCeEEEEcCCcCHHH--HHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-cCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFS--RKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~--~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
++.+|+|||||.|.++ ..++..+++.+++|+|+++++++.|++.+.. .++ ..++.|..+|+.+.+-..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL--~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL--SKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc--cCCcEEEECchhhcccccCCcCEEE
Confidence 6789999999988443 3344567888999999999999999999854 444 5689999999987643357899999
Q ss_pred eccccccC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 238 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 238 ~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+. +++++ +++.++++.+.+.|+|||++++-.... .+.+ .+...++++++ ||++..+.
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G--------~r~~------LYp~v~~~~~~------gf~~~~~~ 259 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG--------ARAF------LYPVVDPCDLR------GFEVLSVF 259 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEecccc--------hHhh------cCCCCChhhCC------CeEEEEEE
Confidence 99 99998 688999999999999999999976321 1100 12223444443 99988764
Q ss_pred EeC-cE--EEEEEeCC
Q 020307 316 VQQ-SF--IMFAAQKP 328 (328)
Q Consensus 316 ~~~-~~--~~~~a~k~ 328 (328)
... .. .+++++|+
T Consensus 260 ~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 260 HPTDEVINSVIIARKP 275 (296)
T ss_pred CCCCCceeeEEEEEee
Confidence 432 22 66666663
No 60
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.64 E-value=7.8e-16 Score=127.37 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=115.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+..+|.|+|||+|..+..|+++.|...++|+|.|++|++.|+++ .++..|..+|+..+. ++...|++
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~~~~dll 96 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PEQPTDLL 96 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CCCccchh
Confidence 455677899999999999999999999999999999999999999887 789999999998874 56789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC-CCcchhhHHH-----HHhhh----ccCCCCCHHHHHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVL-----RERIL----QNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~-----~~~~~----~~~~~~~~~~l~~ll~~ 306 (328)
+++.||++++|-..+|..+...|.|||+|.+..|.... +.+..+.+.. ..... ......++...-++|..
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~ 176 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAP 176 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCc
Confidence 99999999999999999999999999999998886532 2222211111 11111 23445667777777777
Q ss_pred CCCe
Q 020307 307 CGLT 310 (328)
Q Consensus 307 ~Gf~ 310 (328)
.+-+
T Consensus 177 ~~~r 180 (257)
T COG4106 177 LACR 180 (257)
T ss_pred ccce
Confidence 6554
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.64 E-value=2.9e-15 Score=139.55 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=108.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++.. ..++.+...|...+ +++||.|
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~------~l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA------GLPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc------cCeEEEEECchhhc---CCCCCEE
Confidence 445678899999999999999999874 4599999999999999998864 22578888888665 4689999
Q ss_pred EeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCC---CcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 237 HAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS---STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 237 ~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
++..+++|+++ +..+++++.++|||||++++.+...... ...++.+ .........+.+++...++ .||++
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~----yifp~g~lps~~~i~~~~~-~~~~v 307 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINK----YIFPNGCLPSVRQIAQASE-GLFVM 307 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCcee----eecCCCcCCCHHHHHHHHH-CCcEE
Confidence 99999999964 4689999999999999999987654321 1112111 1111223557788888766 58987
Q ss_pred EEEE
Q 020307 312 YTSK 315 (328)
Q Consensus 312 v~~~ 315 (328)
....
T Consensus 308 ~d~~ 311 (383)
T PRK11705 308 EDWH 311 (383)
T ss_pred EEEe
Confidence 7643
No 62
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.64 E-value=6.5e-15 Score=123.00 Aligned_cols=139 Identities=16% Similarity=0.196 Sum_probs=101.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.++||+|||.|+.+..|+++|. +|+++|+|+..++.+++.+...+ -.+.....|+....++ +.||+|
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-CCcCEE
Confidence 3344678999999999999999999998 99999999999999988877764 3599999999887764 689999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
++..|++|++.+ ..+++.+...++|||++++.++..... .+. .......+.+.+|...+. |+++++
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~--------~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPC--------PSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S----------SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCC--------CCCCCcccCHHHHHHHhC--CCeEEE
Confidence 999999998644 468999999999999999877643221 111 012234567788988887 687776
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.63 E-value=8.3e-15 Score=129.35 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=103.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++...++ ...+.+..+ +.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEc
Confidence 3678999999999999998888765 3699999999999999999877542 122332222 2279999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
...+. ...+++++.++|||||+++++.... ...+++.+.+++.||++++....+.
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~~----------------------~~~~~v~~~l~~~Gf~~~~~~~~~~ 241 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSGILE----------------------EQADEVLEAYEEAGFTLDEVLERGE 241 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEECcH----------------------hhHHHHHHHHHHCCCEEEEEEEeCC
Confidence 54322 3577899999999999999976432 1346788999999999999999999
Q ss_pred EEEEEEeCC
Q 020307 320 FIMFAAQKP 328 (328)
Q Consensus 320 ~~~~~a~k~ 328 (328)
|..++++|+
T Consensus 242 W~~~~~~~~ 250 (250)
T PRK00517 242 WVALVGKKK 250 (250)
T ss_pred EEEEEEEeC
Confidence 999998875
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.63 E-value=3.2e-15 Score=127.68 Aligned_cols=103 Identities=12% Similarity=0.234 Sum_probs=86.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++..+..+++|+|+|+++++.|+++ .+++.+..+|+.. |+++++||+|++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEEC
Confidence 456789999999999999999885567999999999999999875 3467788999887 8889999999999
Q ss_pred cccccCC--ChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 240 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 240 ~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+++|++ +...+++++.|++ ++++++.+...+
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 9999995 2357888888887 568888776543
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.63 E-value=9.7e-15 Score=125.31 Aligned_cols=139 Identities=22% Similarity=0.193 Sum_probs=103.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC---------cCCCCCeEEEEecCCCCCCC-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 229 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~- 229 (328)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4678999999999999999999987 99999999999998644221100 00034789999999887642
Q ss_pred CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 230 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
.+.||.|+-..+++|++.. ...++.+.++|||||++++.++...... . ......++.+++.+++..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~--~---------~gpp~~~~~~eL~~~f~~- 178 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE--M---------AGPPFSVSPAEVEALYGG- 178 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC--C---------CCcCCCCCHHHHHHHhcC-
Confidence 4679999999999999644 3689999999999999888776542110 0 122356899999999974
Q ss_pred CCeEE
Q 020307 308 GLTNY 312 (328)
Q Consensus 308 Gf~~v 312 (328)
+|++.
T Consensus 179 ~~~i~ 183 (213)
T TIGR03840 179 HYEIE 183 (213)
T ss_pred CceEE
Confidence 34433
No 66
>PRK06922 hypothetical protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=145.31 Aligned_cols=109 Identities=18% Similarity=0.289 Sum_probs=94.4
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccce
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~ 235 (328)
...++.+|||+|||+|.++..+++..++.+++|+|+|+.|++.|+++.... ..++.++++|+.++| +++++||+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEE
Confidence 344678999999999999999998888889999999999999999876543 346788999998887 77899999
Q ss_pred EEeccccccCC-------------ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+++.++||+. ++..+|+++.++|||||++++.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999998762 457899999999999999999875
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.63 E-value=3.9e-15 Score=122.91 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=106.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+....-.++||+|||.|.++..|+.+.. +++++|+|+..++.|+++... .+++.+.+.|+... .++++||+|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~-~P~~~FDLI 110 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG-----LPHVEWIQADVPEF-WPEGRFDLI 110 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCC-CCCCCeeEE
Confidence 3444567899999999999999999975 999999999999999999876 67999999999765 368899999
Q ss_pred EeccccccCCCh---HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 237 HAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 237 ~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+++.+++++.+. ..+++.+...|+|||.+++.+.... . .. .--+.+..+.+.++|.+. |..++
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~---------~-c~---~wgh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA---------N-CR---RWGHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH---------H-HH---HTT-S--HHHHHHHHHHH-SEEEE
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC---------c-cc---ccCcccchHHHHHHHHHH-hhhee
Confidence 999999999764 4688999999999999999885311 1 11 112456899999999988 54444
Q ss_pred EEE------eCcEEEEEEeCC
Q 020307 314 SKV------QQSFIMFAAQKP 328 (328)
Q Consensus 314 ~~~------~~~~~~~~a~k~ 328 (328)
... ...+++..++||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 177 RVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp EEEEE-SSTTSEEEEEEEE--
T ss_pred EEEEcCCCCCCceEeeeecCC
Confidence 322 223466666665
No 68
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.62 E-value=3.6e-14 Score=120.96 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=99.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++...++ ..++.++.+|+.+. +...+.||
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhhHhhcCCCCC
Confidence 45567889999999999999988875 4556899999999999999999887653 35788999998653 32346899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
.|++.. ...++..+++++.++|||||++++..... -+..++...++++||.
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL----------------------ETVNNALSALENIGFN 164 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH----------------------HHHHHHHHHHHHcCCC
Confidence 999854 23567889999999999999998755321 1235677778888884
No 69
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.62 E-value=7.5e-15 Score=118.28 Aligned_cols=132 Identities=20% Similarity=0.350 Sum_probs=109.0
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 243 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~ 243 (328)
+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+..++..+. ...|.|.+.|+....+..++||+|+--..+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCCcccccceeEEeecCcee
Confidence 99999999999999999998666799999999999999988887763 3349999999988778888999999776665
Q ss_pred cCC---C-----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 244 CWP---S-----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 244 h~~---d-----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
.+. | +...+..+.+.|+|||+++|..-+ ||.+++.+.++..||+.....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-----------------------~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-----------------------FTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecC-----------------------ccHHHHHHHHhcCCeEEEEee
Confidence 442 1 235688899999999999997743 688999999999999988754
Q ss_pred EeCcE
Q 020307 316 VQQSF 320 (328)
Q Consensus 316 ~~~~~ 320 (328)
....|
T Consensus 205 p~ptF 209 (227)
T KOG1271|consen 205 PTPTF 209 (227)
T ss_pred ccceE
Confidence 43333
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.60 E-value=1.4e-14 Score=113.62 Aligned_cols=107 Identities=24% Similarity=0.244 Sum_probs=88.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.+++++...+ ..++.++.+|+.. ++...++||+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDSLPEPDR 91 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhhcCCCCE
Confidence 33445679999999999999999998766799999999999999999887765 4578888888764 3333468999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++....++ ...+++++.+.|||||++++..
T Consensus 92 v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 92 VFIGGSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEECCcchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 999776543 3588999999999999999875
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.60 E-value=9.1e-15 Score=124.18 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~i~ 237 (328)
...+|||||||+|.++..+++..|..+++|+|+++.+++.|++++...+ ..++.++.+|+..++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~---l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG---LKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC---CCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 3569999999999999999999888899999999999999999888766 458999999997643 4566899999
Q ss_pred eccccccCCCh--------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 238 AGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 238 ~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++....+.... ..+++++.++|||||.+++.+...
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 86543322211 468999999999999999988543
No 72
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.60 E-value=8.6e-15 Score=129.99 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCcCH----HHHHHHHhCC-----CceEEEEeCCHHHHHHHHHHHHh----cCcC----------------
Q 020307 161 QGGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNTI---------------- 211 (328)
Q Consensus 161 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~----~~~~---------------- 211 (328)
++.+|||+|||+|. ++..+++.++ ..+++|+|+|+.+++.|++..-. .+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 4445555432 46899999999999999975310 0000
Q ss_pred ----CCCCeEEEEecCCCCCCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 212 ----LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 212 ----~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...++.|.++|+.+.+++.++||+|+|.++++|++++ .++++++.++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0237899999999887778899999999999999755 479999999999999999855
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.58 E-value=7.2e-14 Score=120.37 Aligned_cols=140 Identities=21% Similarity=0.191 Sum_probs=102.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC---------cCCCCCeEEEEecCCCCCCC-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 229 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~- 229 (328)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....++.+.++|+.+++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 4568999999999999999999987 99999999999998743211100 00135789999999887533
Q ss_pred CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 230 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
.+.||.|+-..+++|++.. ..+++.+.++|||||++++.+....... . ......++.+++.+++..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~--~---------~gPp~~~~~~el~~~~~~- 181 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE--L---------AGPPFSVSDEEVEALYAG- 181 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc--C---------CCCCCCCCHHHHHHHhcC-
Confidence 3589999999999999644 4789999999999997666554432110 0 122347899999999964
Q ss_pred CCeEEE
Q 020307 308 GLTNYT 313 (328)
Q Consensus 308 Gf~~v~ 313 (328)
+|++..
T Consensus 182 ~~~i~~ 187 (218)
T PRK13255 182 CFEIEL 187 (218)
T ss_pred CceEEE
Confidence 254443
No 74
>PTZ00146 fibrillarin; Provisional
Probab=99.58 E-value=1.8e-13 Score=121.12 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=101.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC---CCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++. ++...|+++|+++.+.+...+.... ..++.++.+|+... .....+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence 45678899999999999999999988 4456899999998766554444332 46888999998542 223458
Q ss_pred cceEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 233 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
||+|++... .+|. ..++.++.++|||||.+++......-...+ .....|. +++ +.|+++||++
T Consensus 203 vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~-----------~pe~~f~-~ev-~~L~~~GF~~ 266 (293)
T PTZ00146 203 VDVIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTA-----------KPEVVFA-SEV-QKLKKEGLKP 266 (293)
T ss_pred CCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCC-----------CHHHHHH-HHH-HHHHHcCCce
Confidence 999998774 2444 456678999999999999953221100000 0011122 344 7899999999
Q ss_pred EEEEEeCcE----EEEEEe
Q 020307 312 YTSKVQQSF----IMFAAQ 326 (328)
Q Consensus 312 v~~~~~~~~----~~~~a~ 326 (328)
++.....+| .+++++
T Consensus 267 ~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 267 KEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred EEEEecCCccCCcEEEEEE
Confidence 987776655 445544
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=3e-14 Score=122.03 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=86.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|..+..+++.. +..+|+++|+++++++.|++++...+. ..++.++.+|+.+.....++||+
T Consensus 68 l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~--~~~v~~~~~d~~~~~~~~~~fD~ 145 (205)
T PRK13944 68 IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY--WGVVEVYHGDGKRGLEKHAPFDA 145 (205)
T ss_pred cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEECCcccCCccCCCccE
Confidence 445677899999999999999888763 245899999999999999999887653 34689999999765445679999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++..+++|++ +++.++|+|||++++..
T Consensus 146 Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 146 IIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 99999988775 46889999999998855
No 76
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.57 E-value=6e-15 Score=123.09 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=112.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~~fD~i~ 237 (328)
.+-.++||+|||||.....|...-. +.+|+|+|++|++.|.++- .--.+.++++..+ + ..+..||+|+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg--------~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKG--------LYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhcc--------chHHHHHHHHHHHhhhccCCcccchh
Confidence 3457999999999999999988866 8999999999999998751 1223344444321 1 3567899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 317 (328)
...|+.++.+.+.++..+...|+|||.+.++.-...... .+... +....-.++.-++.+++..||+++.....
T Consensus 194 AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-~f~l~------ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 194 AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-GFVLG------PSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-Ceecc------hhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 999999999999999999999999999999876544221 12111 12233456788999999999999885321
Q ss_pred ---------CcEEEEEEeCC
Q 020307 318 ---------QSFIMFAAQKP 328 (328)
Q Consensus 318 ---------~~~~~~~a~k~ 328 (328)
-+-.+++++|+
T Consensus 267 tiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 267 TIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred cchhhcCCCCCCceEEEecC
Confidence 11267777764
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=99.56 E-value=1.8e-13 Score=115.41 Aligned_cols=129 Identities=20% Similarity=0.277 Sum_probs=99.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++...+.. ..++.++.+|+.+ ++.+++||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~-~~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE-PFRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEeccccc-cccccCceEEEEC
Confidence 467799999999999999999885 49999999999999999988765531 1128888898865 3445689999987
Q ss_pred cccccCC---------------------ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHH
Q 020307 240 AALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE 298 (328)
Q Consensus 240 ~vl~h~~---------------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
..+.+.. ....+++++.++|||||.+++..+. ....+
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~----------------------~~~~~ 155 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS----------------------LTGED 155 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc----------------------cCCHH
Confidence 5543211 1345799999999999999886632 12446
Q ss_pred HHHHHHHHCCCeEEEE
Q 020307 299 EIEDLCTSCGLTNYTS 314 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~~ 314 (328)
++.++++++||++...
T Consensus 156 ~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 156 EVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHCCCeeeee
Confidence 7899999999987664
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.55 E-value=5.3e-14 Score=129.36 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=91.9
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccce
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~ 235 (328)
....+..+||||||+|.++..+++..|...++|+|+++.+++.+.+++...+ ..++.++.+|+..+ .++++++|.
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCCCCceeE
Confidence 3445679999999999999999999988899999999999999999988776 56899999998654 467899999
Q ss_pred EEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|++. +++| ..+++++.|+|+|||.+.+.+-..
T Consensus 196 I~ln-----FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 196 IFVH-----FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred EEEe-----CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9975 4555 578999999999999999988543
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=7.7e-14 Score=120.05 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=86.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||||||+|+++..+++. ++..+|+++|+++++++.+++++...+ ..++.++.+|........++||+
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLGYEENAPYDR 148 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCCcCCCcCE
Confidence 45567899999999999999988877 344699999999999999999998765 45799999998766556789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++...+++++ +.+.+.|||||++++..
T Consensus 149 I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 99988776553 45677899999988854
No 80
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.6e-13 Score=121.38 Aligned_cols=138 Identities=18% Similarity=0.333 Sum_probs=108.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|-++...++.|. .+++|+|+++..++.+++++..++. ...+.....+....+ ..++||+|+++=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v--~~~~~~~~~~~~~~~-~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGV--ELLVQAKGFLLLEVP-ENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCC--chhhhcccccchhhc-ccCcccEEEehh
Confidence 788999999999999999999985 4699999999999999999988764 211223333333222 246999999865
Q ss_pred ccccCCCh-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 241 ALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 241 vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
. .++ ..+...+.+.|||||+++++-.... -.+.+.+.+++.||++++......
T Consensus 238 L----A~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------------q~~~V~~a~~~~gf~v~~~~~~~e 291 (300)
T COG2264 238 L----AEVLVELAPDIKRLLKPGGRLILSGILED----------------------QAESVAEAYEQAGFEVVEVLEREE 291 (300)
T ss_pred h----HHHHHHHHHHHHHHcCCCceEEEEeehHh----------------------HHHHHHHHHHhCCCeEeEEEecCC
Confidence 2 234 4778899999999999999774321 135788999999999999999999
Q ss_pred EEEEEEeCC
Q 020307 320 FIMFAAQKP 328 (328)
Q Consensus 320 ~~~~~a~k~ 328 (328)
|..+.++|.
T Consensus 292 W~~i~~kr~ 300 (300)
T COG2264 292 WVAIVGKRK 300 (300)
T ss_pred EEEEEEEcC
Confidence 999999874
No 81
>PRK14967 putative methyltransferase; Provisional
Probab=99.53 E-value=4.3e-13 Score=116.48 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=111.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.+++++...+ .++.++.+|+... +++++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEEE
Confidence 3467899999999999999998874 3589999999999999999887653 3578888998653 45678999999
Q ss_pred ccccccCCC---------------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh------hcc
Q 020307 239 GAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI------LQN 291 (328)
Q Consensus 239 ~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~ 291 (328)
+--...-.. ...+++++.++|||||++++....... .... ...+.... ..+
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~-~~~~-~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG-VERT-LTRLSEAGLDAEVVASQ 185 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC-HHHH-HHHHHHCCCCeEEEEee
Confidence 742211110 245788899999999999987644321 1111 22222210 123
Q ss_pred CCCCCHHH--HHHHHHHCCCeEEEEEEeCcEEEEEEeCC
Q 020307 292 YNYLTEEE--IEDLCTSCGLTNYTSKVQQSFIMFAAQKP 328 (328)
Q Consensus 292 ~~~~~~~~--l~~ll~~~Gf~~v~~~~~~~~~~~~a~k~ 328 (328)
...|.... ...++++.||.... ......+++.|+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 223 (223)
T PRK14967 186 WIPFGPVLRARAAWLERRGLLPPG-QREEELVVIRADKP 223 (223)
T ss_pred ccCccHHHHHHHHHHHHcCCCCCC-CceEEEEEEEeecC
Confidence 33344433 45788999998664 55566788899997
No 82
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=1.2e-12 Score=107.35 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=107.7
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD 234 (328)
.|.+.++.+++|||||+|..+..++..+|..+|+++|-++++++..+++....+ .+|+.++.+++.+ ++ ...++|
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~L~-~~~~~d 104 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEALP-DLPSPD 104 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHhhc-CCCCCC
Confidence 467789999999999999999999988999999999999999999999999887 7899999999954 33 222799
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC-eEEE
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL-TNYT 313 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf-~~v~ 313 (328)
.|+.... .+...+|+.+...|||||++++...... +.....+.+++.|+ +++.
T Consensus 105 aiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE----------------------~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 105 AIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE----------------------TLAKALEALEQLGGREIVQ 158 (187)
T ss_pred EEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH----------------------HHHHHHHHHHHcCCceEEE
Confidence 9999887 3467889999999999999999664321 33456788899999 6555
Q ss_pred E
Q 020307 314 S 314 (328)
Q Consensus 314 ~ 314 (328)
.
T Consensus 159 v 159 (187)
T COG2242 159 V 159 (187)
T ss_pred E
Confidence 4
No 83
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.52 E-value=1e-13 Score=115.32 Aligned_cols=157 Identities=18% Similarity=0.319 Sum_probs=104.4
Q ss_pred chHHHHHHhhHHhhhhcCCCCCcchh-hhcccc-CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q 020307 129 PFVSFLYERGWRQNFNRSGFPGPDEE-EYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 206 (328)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 206 (328)
+.+-..|+.+++++...+....-... +++... +...|-|+|||.+.++..+... .+|.-.|+-.
T Consensus 38 P~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva----------- 103 (219)
T PF05148_consen 38 PELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA----------- 103 (219)
T ss_dssp HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---ceEEEeeccC-----------
Confidence 44445789999988887654433333 556544 4579999999999998765532 2799999843
Q ss_pred hcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH
Q 020307 207 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 286 (328)
Q Consensus 207 ~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 286 (328)
.+-.+..+|+.++|++++++|+++++..|.- .|...+++|+.|+|||||.|.|.+....
T Consensus 104 -------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR------------- 162 (219)
T PF05148_consen 104 -------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR------------- 162 (219)
T ss_dssp -------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------
T ss_pred -------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc-------------
Confidence 2334678999999999999999999887764 4788999999999999999999996432
Q ss_pred hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-CcEEEEEEeC
Q 020307 287 RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQK 327 (328)
Q Consensus 287 ~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~~~~~~a~k 327 (328)
+-+.+.+.+.++..||+....... .-|+++.++|
T Consensus 163 -------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 -------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp --------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred -------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 236778999999999998886544 4467777765
No 84
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.52 E-value=4.3e-13 Score=123.90 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=87.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+....+.+|||+|||+|.++..+++.+|..+|+++|+|+.+++.++++++..+.....++.++..|.... ++.++||+|
T Consensus 224 lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlI 302 (378)
T PRK15001 224 LPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAV 302 (378)
T ss_pred CCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEE
Confidence 3333456999999999999999999988889999999999999999998765421123678888887442 235689999
Q ss_pred EeccccccC---CC--hHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCW---PS--PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~---~d--~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+++--+|.. .+ ..++++++.++|+|||.++++.
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 997555432 22 2478999999999999999986
No 85
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.52 E-value=2.1e-13 Score=121.88 Aligned_cols=136 Identities=21% Similarity=0.328 Sum_probs=104.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|++++..+++ ..++.+. ..... ..++||+|+++
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v~--~~~~~--~~~~~dlvvAN 232 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGV--EDRIEVS--LSEDL--VEGKFDLVVAN 232 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CTSCT--CCS-EEEEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCC--CeeEEEE--Eeccc--ccccCCEEEEC
Confidence 4678999999999999999999985 4799999999999999999998875 4444432 22222 35899999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
-..+- ...+...+.++|+|||+++++-.... ..+++.+.+++ ||++++....+.
T Consensus 233 I~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------------~~~~v~~a~~~-g~~~~~~~~~~~ 286 (295)
T PF06325_consen 233 ILADV---LLELAPDIASLLKPGGYLILSGILEE----------------------QEDEVIEAYKQ-GFELVEEREEGE 286 (295)
T ss_dssp S-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHT-TEEEEEEEEETT
T ss_pred CCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------------HHHHHHHHHHC-CCEEEEEEEECC
Confidence 54321 24667788999999999999875432 24577888877 999999999999
Q ss_pred EEEEEEeCC
Q 020307 320 FIMFAAQKP 328 (328)
Q Consensus 320 ~~~~~a~k~ 328 (328)
|..+.++|.
T Consensus 287 W~~l~~~Kk 295 (295)
T PF06325_consen 287 WVALVFKKK 295 (295)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEEeC
Confidence 999999874
No 86
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.52 E-value=7.2e-13 Score=118.96 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...++ ..++.++.+|+.+ ++++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~~-~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLFA-ALPGRKYDLIVSNP 197 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhh-ccCCCCccEEEECC
Confidence 45689999999999999999988778999999999999999999987664 3579999999854 23456899999861
Q ss_pred ------ccccC-----CCh--------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCC
Q 020307 241 ------ALHCW-----PSP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 295 (328)
Q Consensus 241 ------vl~h~-----~d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (328)
.+.++ .+| ..+++++.++|+|||++++... .
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g------------------------~ 253 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG------------------------N 253 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------------c
Confidence 11111 122 4568889999999999988652 1
Q ss_pred CHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 296 TEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
+.+.+++++..+||........+.
T Consensus 254 ~~~~v~~~~~~~~~~~~~~~~~~~ 277 (284)
T TIGR03533 254 SMEALEEAYPDVPFTWLEFENGGD 277 (284)
T ss_pred CHHHHHHHHHhCCCceeeecCCCc
Confidence 335788889999998776444433
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.52 E-value=2.3e-13 Score=124.92 Aligned_cols=129 Identities=21% Similarity=0.257 Sum_probs=102.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
....++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+++..+ ..++.+..+|+.++|+.+++||+|
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g---~~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYG---IEDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhC---CCCCeEEecchhcCCcccCCCCEE
Confidence 3456788999999999999988877654 99999999999999999998876 345889999999999888899999
Q ss_pred Eecccc------c-c-CCC-hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 237 HAGAAL------H-C-WPS-PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 237 ~~~~vl------~-h-~~d-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
+++--. . + ..+ ...+++++.++|||||++++..+.. .++.++++++
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-------------------------~~~~~~~~~~ 307 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-------------------------IDLESLAEDA 307 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-------------------------CCHHHHHhhc
Confidence 996211 1 1 101 3688999999999999999877542 2566789999
Q ss_pred CCeEEEEEE
Q 020307 308 GLTNYTSKV 316 (328)
Q Consensus 308 Gf~~v~~~~ 316 (328)
|| ++....
T Consensus 308 g~-i~~~~~ 315 (329)
T TIGR01177 308 FR-VVKRFE 315 (329)
T ss_pred Cc-chheee
Confidence 99 666433
No 88
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=2.4e-13 Score=122.47 Aligned_cols=130 Identities=18% Similarity=0.259 Sum_probs=99.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...++ ..++.+...+... ..+++||+|+++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~--~~~~~~~~~~~~~--~~~~~fDlVvan 232 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQV--SDRLQVKLIYLEQ--PIEGKADVIVAN 232 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeccccc--ccCCCceEEEEe
Confidence 357899999999999998888875 35899999999999999999887654 3456666665432 336789999997
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
...++ ...++.++.++|||||+++++..... ..+++.+.+++. |++++....+.
T Consensus 233 ~~~~~---l~~ll~~~~~~LkpgG~li~sgi~~~----------------------~~~~v~~~~~~~-f~~~~~~~~~~ 286 (288)
T TIGR00406 233 ILAEV---IKELYPQFSRLVKPGGWLILSGILET----------------------QAQSVCDAYEQG-FTVVEIRQREE 286 (288)
T ss_pred cCHHH---HHHHHHHHHHHcCCCcEEEEEeCcHh----------------------HHHHHHHHHHcc-CceeeEeccCC
Confidence 65432 35789999999999999999774321 235777888777 98888666554
Q ss_pred E
Q 020307 320 F 320 (328)
Q Consensus 320 ~ 320 (328)
|
T Consensus 287 W 287 (288)
T TIGR00406 287 W 287 (288)
T ss_pred C
Confidence 4
No 89
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.51 E-value=2e-13 Score=117.89 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=86.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++... ..+|+++|+++++++.|++++...+ ..++.++.+|........++||+
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~~~~~~fD~ 149 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGWEPLAPYDR 149 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCCcccCCCCE
Confidence 4556789999999999999999998853 4569999999999999999998866 46799999998765444568999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++.....++ .+.+.+.|||||++++..
T Consensus 150 Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 9988776554 356788999999998865
No 90
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.51 E-value=5e-13 Score=118.05 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=100.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++...+ ..++.++.+|+.+ ++++++||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG---LDNVTFLQSDWFE-PLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhc-cCcCCceeEEEECC
Confidence 3468999999999999999998777799999999999999999988765 3479999999866 45578999999853
Q ss_pred cc------ccCC------C--------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 241 AL------HCWP------S--------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 241 vl------~h~~------d--------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
-. +++. + ...+++++.++|+|||++++... +
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-----------------------~ 219 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-----------------------Y 219 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-----------------------c
Confidence 21 1111 0 13568899999999999988541 1
Q ss_pred CCHHHHHHHHHHCCCeEEEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
...+++.++++++||+.++..
T Consensus 220 ~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 220 DQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred cHHHHHHHHHHhCCCCceEEE
Confidence 234678999999999877643
No 91
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=4.7e-14 Score=118.89 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=110.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCCCccceE
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAV 236 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~i 236 (328)
.+||+||||.|....-+.+-.++ ..++++|.|+.+++..++..... ..++...+.|+.. -|...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence 38999999999999988887665 78999999999999988765432 3345555566633 34668999999
Q ss_pred EeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-h-----hhHH-HHHhhhccCCCCCHHHHHHHHHHC
Q 020307 237 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-L-----TGRV-LRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 237 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~-----~~~~-~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
++.+||--++ ....+++++.++|||||.+++.++..+....- + +... +.........+|+.+++..++.++
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9999998874 23588999999999999999999887632111 1 0111 011122445799999999999999
Q ss_pred CCeEEE
Q 020307 308 GLTNYT 313 (328)
Q Consensus 308 Gf~~v~ 313 (328)
||..++
T Consensus 229 gf~~~~ 234 (264)
T KOG2361|consen 229 GFEEVQ 234 (264)
T ss_pred ccchhc
Confidence 998765
No 92
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.50 E-value=3.5e-13 Score=115.62 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=79.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 229 (328)
..++.+|||+|||+|.++..+++.. +...|+|+|+++ + . . .+++.++++|+.+.+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----~------~---~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----D------P---IVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----c------C---CCCcEEEecCCCChHHHHHHHHHhC
Confidence 3567899999999999999998874 446899999988 1 1 1 457899999998753 56
Q ss_pred CCccceEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+++||+|++..+.++..++ ..+|+++.++|||||.+++..+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 7899999998776665543 35799999999999999997754
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.49 E-value=1.5e-12 Score=119.41 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=86.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
...++|||+|||+|.++..+++.++..+++++|+|+.+++.++++++..++ ...++..|.... .+++||+|+++
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l----~~~~~~~D~~~~--~~~~fDlIvsN 268 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL----EGEVFASNVFSD--IKGRFDMIISN 268 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEcccccc--cCCCccEEEEC
Confidence 345689999999999999999998878999999999999999998887642 356777777542 25789999999
Q ss_pred cccccCC-----ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 240 AALHCWP-----SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 240 ~vl~h~~-----d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-.+|+.. ....+++++.+.|||||.++++..
T Consensus 269 PPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 8877632 246889999999999999998774
No 94
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.49 E-value=1.6e-13 Score=106.73 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=88.1
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~~ 239 (328)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.++.++...+. ..++.++++|+.+.. +++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL--DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT--TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC--CceEEEEECchhhchhhccCceeEEEEEC
Confidence 4689999999999999999998 56999999999999999999988664 568999999997765 678999999997
Q ss_pred cccccCC--------ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 240 AALHCWP--------SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
--..... .-..+++++.++|||||.+++..++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 5544221 1247899999999999999998763
No 95
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.48 E-value=1.7e-12 Score=117.58 Aligned_cols=127 Identities=18% Similarity=0.169 Sum_probs=97.6
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc--
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-- 240 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~-- 240 (328)
.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...++ ..++.++.+|+.+. +++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~~~-l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL--EDRVTLIESDLFAA-LPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCcEEEEECchhhh-CCCCCccEEEECCCC
Confidence 689999999999999999988778999999999999999999987663 35799999998542 2356899999861
Q ss_pred ----c-------cccCCC------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCH
Q 020307 241 ----A-------LHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 297 (328)
Q Consensus 241 ----v-------l~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (328)
. +.|-|. ...+++++.+.|+|||++++.... +.
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~------------------------~~ 267 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN------------------------SR 267 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc------------------------CH
Confidence 1 122221 136789999999999999985521 23
Q ss_pred HHHHHHHHHCCCeEEEEEE
Q 020307 298 EEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 298 ~~l~~ll~~~Gf~~v~~~~ 316 (328)
+.+.+++...||.......
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (307)
T PRK11805 268 VHLEEAYPDVPFTWLEFEN 286 (307)
T ss_pred HHHHHHHhhCCCEEEEecC
Confidence 4577788888887766433
No 96
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.48 E-value=5.9e-13 Score=110.64 Aligned_cols=110 Identities=23% Similarity=0.404 Sum_probs=88.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+..+|||+|||+|.++..+++.++..+|+++|+++.+++.+++++...++ .++.++..|..+. .++++||+|
T Consensus 27 l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~-~~~~~fD~I 102 (170)
T PF05175_consen 27 LPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEA-LPDGKFDLI 102 (170)
T ss_dssp HHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTT-CCTTCEEEE
T ss_pred HhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---ccccccccccccc-ccccceeEE
Confidence 333467899999999999999999999877799999999999999999998763 3499999998653 337899999
Q ss_pred EeccccccCCC-----hHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+++--++.-.+ ...++++..+.|||||.+++...
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 99865544333 35789999999999999987664
No 97
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.47 E-value=5.5e-13 Score=120.84 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=82.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCC----cc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~----~f 233 (328)
.++.+|||+|||+|..+..|++..+ ..+|+|+|+|++|++.+++++..... ..++.++++|+.+ +++... ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p--~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP--QLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC--CceEEEEEEcccchhhhhcccccCCe
Confidence 3567999999999999999998864 45899999999999999998765321 3456778999865 343332 23
Q ss_pred ceEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEE
Q 020307 234 DAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 234 D~i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.++++...+.|++. ...+|++++++|+|||.+++..
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 34555567888763 3478999999999999998644
No 98
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.46 E-value=1.9e-13 Score=113.50 Aligned_cols=101 Identities=28% Similarity=0.413 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~i~~~ 239 (328)
...-|||||||+|..+..|.+.|. ..+|+|+|+.|++.|.++- -.-+++.+|+ +.+||+.++||.+++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e--------~egdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERE--------LEGDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhh--------hhcCeeeeecCCCCCCCCCccceEEEe
Confidence 467899999999999999999886 8999999999999998742 1245777887 7799999999999998
Q ss_pred cccccCC-------ChH----HHHHHHHhcccCCcEEEEEEec
Q 020307 240 AALHCWP-------SPS----NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~-------d~~----~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
..+.++- +|. .++..++.+|++|++.++..+-
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 7775552 332 5788899999999999987643
No 99
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.46 E-value=6.2e-13 Score=111.81 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=105.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
...+.||.|+|-|+.+..+.... ..+|..+|+.+..++.|++.+.... ..-..+++..++++....++||+|++-|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence 45799999999999998775443 3499999999999999998766522 3456788888887754567999999999
Q ss_pred ccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC
Q 020307 241 ALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ 318 (328)
Q Consensus 241 vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~ 318 (328)
++.|++|. ..+|+.+...|+|+|++++-+.........+ .........+.+.++++++++|+++++...+.
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~-------D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEF-------DEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEE-------ETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCccc-------CCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 99999876 4899999999999999999887765322111 11133445678899999999999999988877
Q ss_pred cE
Q 020307 319 SF 320 (328)
Q Consensus 319 ~~ 320 (328)
.|
T Consensus 204 ~f 205 (218)
T PF05891_consen 204 GF 205 (218)
T ss_dssp T-
T ss_pred CC
Confidence 76
No 100
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=2.9e-12 Score=115.25 Aligned_cols=126 Identities=14% Similarity=0.223 Sum_probs=97.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec---
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG--- 239 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~--- 239 (328)
.+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++...++ ..++.++.+|+.+ +++..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSNLFE-PLAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence 689999999999999999988778999999999999999999887653 3459999999865 3444589999986
Q ss_pred ----------cccccCC------------ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCH
Q 020307 240 ----------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 297 (328)
Q Consensus 240 ----------~vl~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (328)
.++.|-| ....+++++.+.|+|||++++..... ..
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------------------q~ 249 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----------------------QQ 249 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------------------HH
Confidence 2333333 23467889999999999998866321 23
Q ss_pred HHHHHHHH-HCCCeEEEE
Q 020307 298 EEIEDLCT-SCGLTNYTS 314 (328)
Q Consensus 298 ~~l~~ll~-~~Gf~~v~~ 314 (328)
+.+.+++. ..||..++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 250 KSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHhcCCCceeEE
Confidence 46677777 468876654
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=1.8e-12 Score=110.28 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=85.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++...+ ..++.++.+|+.. ++.....+|.
T Consensus 36 l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 36 LRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECLAQLAPAPDR 112 (196)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHHhhCCCCCCE
Confidence 45567889999999999999999887666799999999999999999987765 4578999998854 2222234677
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++... ..+...+++++.++|+|||++++..++
T Consensus 113 v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 113 VCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 65532 235578999999999999999998754
No 102
>PHA03411 putative methyltransferase; Provisional
Probab=99.44 E-value=3.2e-12 Score=111.94 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=97.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
...+|||+|||+|.++..++.+.+..+++|+|+++.+++.++++ .+++.++++|+..+. .+.+||+|+++-
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v~~D~~e~~-~~~kFDlIIsNP 134 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWITSDVFEFE-SNEKFDVVISNP 134 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEEECchhhhc-ccCCCcEEEEcC
Confidence 45699999999999998888775456999999999999999875 447889999998765 356899999988
Q ss_pred ccccCCCh--------------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHH
Q 020307 241 ALHCWPSP--------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 300 (328)
Q Consensus 241 vl~h~~d~--------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (328)
-+.|.+.. ..+++....+|+|+|.+++.-...+ +. ..-++.+++
T Consensus 135 PF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~----------~y------~~sl~~~~y 198 (279)
T PHA03411 135 PFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP----------YY------DGTMKSNKY 198 (279)
T ss_pred CccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc----------cc------cccCCHHHH
Confidence 77775321 3566778889999997776632211 11 234678999
Q ss_pred HHHHHHCCCeE
Q 020307 301 EDLCTSCGLTN 311 (328)
Q Consensus 301 ~~ll~~~Gf~~ 311 (328)
+.+++++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999964
No 103
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.44 E-value=2.8e-12 Score=109.07 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=120.3
Q ss_pred hhccCC-chHHHHHHhhHHhhhhcCCCCCcchh-hhcccc-CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHH
Q 020307 123 TELFRS-PFVSFLYERGWRQNFNRSGFPGPDEE-EYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR 199 (328)
Q Consensus 123 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~ 199 (328)
.++|.. +..-..|+.+++.+...+........ ..+... ....|-|+|||.+.++. ... -.|+.+|+-
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~----- 208 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SER--HKVHSFDLV----- 208 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---ccc--cceeeeeee-----
Confidence 344443 33445788999988887765444333 444443 45689999999987765 222 279999973
Q ss_pred HHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch
Q 020307 200 QCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279 (328)
Q Consensus 200 ~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 279 (328)
..+-+++.+|+.++|+++++.|+++++.+|.- .|...+++|+.|+||+||.++|.+..
T Consensus 209 -------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~-------- 266 (325)
T KOG3045|consen 209 -------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVK-------- 266 (325)
T ss_pred -------------cCCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehh--------
Confidence 34556788999999999999999998877653 58889999999999999999998843
Q ss_pred hhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-CcEEEEEEeCC
Q 020307 280 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP 328 (328)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~~~~~~a~k~ 328 (328)
.++-+...+.+.+...||++...... .-|++|.++|+
T Consensus 267 ------------SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~ 304 (325)
T KOG3045|consen 267 ------------SRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKT 304 (325)
T ss_pred ------------hhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecC
Confidence 23445677999999999998886554 44677877763
No 104
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.44 E-value=1.8e-12 Score=111.64 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=84.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++... +++++|+++++++.++++++..+ ..++.+..+|..+.....++||+|
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCCCcCCCcCEE
Confidence 5566788999999999999988888754 89999999999999999988765 456999999985532234789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++...++++ .+.+.+.|+|||++++...
T Consensus 149 ~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 998877665 3567889999999998765
No 105
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.44 E-value=2.4e-12 Score=113.18 Aligned_cols=134 Identities=22% Similarity=0.277 Sum_probs=101.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..+..+|||||+|+|.++..+++..|+.+++.+|. +..++.+++ ..++.++.+|+. -+++. +|+|++
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~--~D~~~l 164 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV--ADVYLL 164 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--ESEEEE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--ccceee
Confidence 34557999999999999999999999999999998 888888887 569999999997 55555 999999
Q ss_pred ccccccCCChH--HHHHHHHhcccCC--cEEEEEEeccCCCCcchhhH---HHHH---hhhccCCCCCHHHHHHHHH
Q 020307 239 GAALHCWPSPS--NAVAEISRILRSG--GVFVGTTFLRYTSSTSLTGR---VLRE---RILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~~d~~--~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~l~~ll~ 305 (328)
.++||+++|.. .+|+++++.|+|| |+|+|.++..+......... .+.. .....-.-+|.++|+++|+
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 99999998774 7899999999999 99999998765333222111 1122 1112266778899988874
No 106
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=5.4e-12 Score=108.97 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=107.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD 234 (328)
......++|||+|||+|..+..++++.+..+++|||+++.+.+.|++.++.+++ ..++.++++|+.++. ....+||
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l--~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL--EERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc--hhceeEehhhHHHhhhcccccccC
Confidence 444557899999999999999999997678999999999999999999988765 789999999997764 3345799
Q ss_pred eEEeccccc----------------cC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCC
Q 020307 235 AVHAGAALH----------------CW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLT 296 (328)
Q Consensus 235 ~i~~~~vl~----------------h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (328)
+|+|+=-.. |. .+.+..++...++|||||.+.++-+.. .
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------------------r 174 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------------------R 174 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------------------H
Confidence 999973211 11 123578899999999999999976421 2
Q ss_pred HHHHHHHHHHCCCeEEEEEE
Q 020307 297 EEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~~v~~~~ 316 (328)
..++.+++++.+|+..+...
T Consensus 175 l~ei~~~l~~~~~~~k~i~~ 194 (248)
T COG4123 175 LAEIIELLKSYNLEPKRIQF 194 (248)
T ss_pred HHHHHHHHHhcCCCceEEEE
Confidence 34788999999998877533
No 107
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=9.2e-12 Score=106.99 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=103.4
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc------C---cCCCCCeEEEEecCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------N---TILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~---~~~~~~i~~~~~d~~~lp~~ 229 (328)
..++.+||+.|||.|..+..|+++|. +|+|+|+|+..++.+.+..... + .....+++++++|+.+++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 34568999999999999999999988 8999999999999986632100 0 00135799999999988632
Q ss_pred ---CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 020307 230 ---SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 304 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 304 (328)
.+.||+|+-...+.+++.. .+..+.+.++|+|||.+++.+...... ........+.+++++++
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~------------~~GPPf~v~~~e~~~lf 186 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK------------SQTPPYSVTQAELIKNF 186 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC------------CCCCCCcCCHHHHHHhc
Confidence 3689999999999999644 478999999999999999888643210 00222335677888877
Q ss_pred HHC-CCeEEE
Q 020307 305 TSC-GLTNYT 313 (328)
Q Consensus 305 ~~~-Gf~~v~ 313 (328)
... .++.+.
T Consensus 187 ~~~~~i~~l~ 196 (226)
T PRK13256 187 SAKIKFELID 196 (226)
T ss_pred cCCceEEEee
Confidence 542 444433
No 108
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=1.5e-11 Score=114.04 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~~ 239 (328)
++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++...+ .++.++++|+.+..+ ..++||+|+++
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhccccccCCCccEEEEC
Confidence 4569999999999999999988777799999999999999999987653 379999999865432 24579999995
Q ss_pred ccc-----ccCC------Ch--------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 240 AAL-----HCWP------SP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 240 ~vl-----~h~~------d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
--. .+.. +| ..+++.+.+.|+|||.+++....
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----------------------- 383 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----------------------- 383 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-----------------------
Confidence 311 0000 11 25667777899999998774421
Q ss_pred CCHHHHHHHHHHCCCeEEEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
-..+.+.+++++.||..++..
T Consensus 384 ~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 384 DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred cHHHHHHHHHHHCCCcEEEEE
Confidence 124578899999999876643
No 109
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=2.4e-11 Score=108.90 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=97.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++.. .. ..++.++.+|+... +..++||+|++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~--~~~i~~~~~d~~~~-~~~~~fD~Iv~ 181 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GL--GARVEFLQGDWFEP-LPGGRFDLIVS 181 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CC--CCcEEEEEccccCc-CCCCceeEEEE
Confidence 3456799999999999999999998778999999999999999998872 11 46899999998542 33578999998
Q ss_pred cccc------c--------cCC------------ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccC
Q 020307 239 GAAL------H--------CWP------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY 292 (328)
Q Consensus 239 ~~vl------~--------h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (328)
+--. + |-+ ....+++++.++|+|||++++....
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~--------------------- 240 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY--------------------- 240 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------------------
Confidence 5211 1 111 1245788888999999999984411
Q ss_pred CCCCHHHHHHHHHHCCCeEEEE
Q 020307 293 NYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 293 ~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
...+++++++++.||..++.
T Consensus 241 --~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 --DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred --hHHHHHHHHHHhCCCceeEE
Confidence 12346889999999986664
No 110
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.6e-12 Score=107.96 Aligned_cols=110 Identities=22% Similarity=0.286 Sum_probs=96.2
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCcc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 233 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 233 (328)
..+...++.+|||.|.|+|.++..|+.. ++..+|+.+|+.++..+.|+++++..++ ..++.+..+|+.+.-+.+ .|
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~~~~~-~v 164 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREGIDEE-DV 164 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEecccccccccc-cc
Confidence 4467789999999999999999999974 7778999999999999999999999875 455999999997765544 89
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|+|+.. +++|..++..+.+.|||||.+++..|+.
T Consensus 165 Dav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 165 DAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred CEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 999963 5899999999999999999999988764
No 111
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.1e-12 Score=105.47 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=89.4
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
+.+...++.+|||||||+|+.+..+++... +|+.+|..+...+.|+++++..+ ..|+.++++|-..=--+.++||
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCCCCCCcC
Confidence 457788999999999999999999999875 99999999999999999999987 5679999999854322458999
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.|+.......+|++ +.+.||+||++++-.-
T Consensus 141 ~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 99999988776443 5668999999999664
No 112
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.37 E-value=2.2e-12 Score=110.04 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=82.5
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.+...++.+|||||||+|+++..++.. ++...|+++|+++..++.|++++...+ ..++.++.+|...-.-..++||
T Consensus 67 ~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 67 ALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp HTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGTTGGG-SEE
T ss_pred HHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhccccCCCcC
Confidence 466788999999999999999999987 555579999999999999999999876 5699999999854333467899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.|++......+| ..+.+.||+||++++-.-
T Consensus 144 ~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 144 RIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred EEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 999998877553 336678999999998553
No 113
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.37 E-value=8e-12 Score=107.54 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=100.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
...++||||.|.|..+..++..+. +|++.|.|+.|....+++ ++.++ |..++.-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl--~~~~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVL--DIDDWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEE--ehhhhhccCCceEEEeehh
Confidence 456899999999999999999876 899999999997665542 33333 3323333356899999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhh-HHHHHhhhccCCCCC----HHHHHHHHHHCCCeEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG-RVLRERILQNYNYLT----EEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~l~~ll~~~Gf~~v~~~ 315 (328)
+|..-.+|..+|+++++.|+|+|++++....+..+....-. +...+...-....-+ .+.+.+.++.+||++++ .
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~-~ 238 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVER-W 238 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEE-E
Confidence 99999999999999999999999999877655433332211 000000000000111 23455889999999887 5
Q ss_pred EeCcE
Q 020307 316 VQQSF 320 (328)
Q Consensus 316 ~~~~~ 320 (328)
..-+|
T Consensus 239 tr~PY 243 (265)
T PF05219_consen 239 TRLPY 243 (265)
T ss_pred eccCc
Confidence 54444
No 114
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.36 E-value=2.8e-12 Score=108.32 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=83.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 242 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl 242 (328)
..++|+|||+|..++.++.... +|+|+|+|+.|++.|++....... .....+...+...|--.++++|+|++...+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccc--cCCccccccccccccCCCcceeeehhhhhH
Confidence 3899999999988888998866 999999999999999885332111 112222222333332338899999999998
Q ss_pred ccCCChHHHHHHHHhcccCCc-EEEEEEeccCCCCcchhhHHHHHhh
Q 020307 243 HCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLRERI 288 (328)
Q Consensus 243 ~h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~ 288 (328)
|++ |.+++.+++.|+||++| .+.+-..+.+....+-....+....
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~ 156 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLY 156 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHh
Confidence 876 77788999999998866 6666555533333333344444433
No 115
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.36 E-value=8.2e-12 Score=93.60 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=84.7
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEecccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL 242 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~~~vl 242 (328)
+|+|+|||.|.++..+.+ ....+++++|+++..++.+++...... ..++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL---ADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc---ccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 345699999999999998885433322 5678999999877653 46789999999999
Q ss_pred cc-CCChHHHHHHHHhcccCCcEEEEE
Q 020307 243 HC-WPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 243 ~h-~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
++ ..++..+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98 777889999999999999999875
No 116
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.36 E-value=1.3e-11 Score=117.25 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=97.2
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC--CCCcc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--ASGFV 233 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~f 233 (328)
.+...++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++++..++ ...+.+..+|....+. ..++|
T Consensus 233 ~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 233 WLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred HhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecccccccccccccccc
Confidence 4566788999999999999999999875567999999999999999999988764 2234446677665443 46789
Q ss_pred ceEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH
Q 020307 234 DAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 286 (328)
Q Consensus 234 D~i~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 286 (328)
|.|++. +++.+.++ ...+|+++.++|||||++++++.......+......+..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 999953 55666655 257899999999999999999976654444443333333
No 117
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.35 E-value=1.1e-11 Score=107.87 Aligned_cols=165 Identities=13% Similarity=0.184 Sum_probs=125.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD 234 (328)
...-+||||.||.|..........+. .++.-.|.|+..++..++.+++.++ ..-+.|.++|+.+.. --+...+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCCC
Confidence 35679999999999998888887664 6899999999999999999999885 444599999986532 1234579
Q ss_pred eEEeccccccCCChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH---hhhccCCCCCHHHHHHHHHHCC
Q 020307 235 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE---RILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ll~~~G 308 (328)
+++.+.++|.++|-. ..|+.+.+.+.|||+++.+.-. .++...++.+.+.. ..+..+..-+..++.++++.+|
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP-wHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG 290 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP-WHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG 290 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC-CCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC
Confidence 999999999999854 5799999999999999886611 11222223333322 1234566889999999999999
Q ss_pred CeEEEE--EEeCcEEEEEEeC
Q 020307 309 LTNYTS--KVQQSFIMFAAQK 327 (328)
Q Consensus 309 f~~v~~--~~~~~~~~~~a~k 327 (328)
|+.+.. ...+.|.+-+|+|
T Consensus 291 F~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 291 FEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred CchhhheeccCCceEEEeecC
Confidence 987664 4456678888775
No 118
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.35 E-value=2.8e-11 Score=104.10 Aligned_cols=143 Identities=20% Similarity=0.264 Sum_probs=100.8
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-cCc--------CCCCCeEEEEecCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNT--------ILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~~--------~~~~~i~~~~~d~~~lp~~ 229 (328)
..++.+||+.|||.|.-+..|+++|. +|+|+|+|+..++.+.+.... ... ....++.++++|+.+++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 45677999999999999999999987 999999999999998543221 000 0134689999999887643
Q ss_pred C-CccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 230 S-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 230 ~-~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
. ++||+|+-...+.-++.. .+..+.+.++|+|||.+++.+....... ........+++++++++.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~-----------~~GPPf~v~~~ev~~l~~- 180 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE-----------MEGPPFSVTEEEVRELFG- 180 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC-----------SSSSS----HHHHHHHHT-
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC-----------CCCcCCCCCHHHHHHHhc-
Confidence 3 579999998888877532 5889999999999999555554322110 012334568899999999
Q ss_pred CCCeEEEEE
Q 020307 307 CGLTNYTSK 315 (328)
Q Consensus 307 ~Gf~~v~~~ 315 (328)
.+|++....
T Consensus 181 ~~f~i~~l~ 189 (218)
T PF05724_consen 181 PGFEIEELE 189 (218)
T ss_dssp TTEEEEEEE
T ss_pred CCcEEEEEe
Confidence 888876643
No 119
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=5.2e-11 Score=113.13 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=89.1
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCcc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFV 233 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~f 233 (328)
.+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..++ ++.++++|+.+++ +..++|
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~----~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL----KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEcCcccchhhcccCCC
Confidence 4556688999999999999999999987557999999999999999999987653 4688999997754 345789
Q ss_pred ceEEecc------ccccCC------Ch----------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHAGA------ALHCWP------SP----------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~------vl~h~~------d~----------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|.|++.- ++.+-+ .+ ..+|+.+.++|||||++++++...
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999432 222211 12 268999999999999999988544
No 120
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.34 E-value=2.9e-11 Score=116.76 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=97.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...++ ..++.++.+|+.. +++.++||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~-~~~~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFE-NIEKQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhh-hCcCCCccEEEECC
Confidence 34689999999999999999887778999999999999999999887654 4578999999754 23456899999842
Q ss_pred --------------ccccCCC------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 241 --------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 241 --------------vl~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
++.|-|. ...+++++.++|+|||.+++... +
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-----------------------~ 271 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-----------------------F 271 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-----------------------C
Confidence 2222211 12467788899999999987541 1
Q ss_pred CCHHHHHHHHHHCCCeEEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~~ 314 (328)
-..+.+.+++++.||..++.
T Consensus 272 ~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred chHHHHHHHHHhcCCCceEE
Confidence 13457888899999986654
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=2e-11 Score=116.17 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=93.2
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FAS 230 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~ 230 (328)
.+...++.+|||+|||+|..+..+++.. ...+++++|+++.+++.+++++...+ ..++.++.+|+..++ +..
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG---LKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC---CCeEEEEeCChhhccccccccc
Confidence 3556678999999999999999998873 34589999999999999999998876 457999999998765 445
Q ss_pred CccceEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 231 GFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 231 ~~fD~i~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++||.|++. +++.+-++ ...+|.++.++|||||+++.++...
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 789999973 45655554 2477999999999999999988554
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=8.4e-12 Score=113.27 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=83.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++... ...|+++|+++++++.|++++...+ ..++.++.+|+...+...++||+
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~~~~~~fD~ 152 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGVPEFAPYDV 152 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcccccCCccE
Confidence 4455778999999999999999998753 2469999999999999999988766 45789999998765545578999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++...++++ ...+.+.|+|||++++..
T Consensus 153 Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 9998776654 234678999999988854
No 123
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.33 E-value=2.5e-11 Score=105.72 Aligned_cols=130 Identities=20% Similarity=0.336 Sum_probs=102.4
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SG 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~ 231 (328)
.+...||.+|||.|.|+|.++..|++. +|.++|+.+|+.++..+.|+++++..++ ..++.+...|+.+..|. +.
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GGCG--STT-TT
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEecceecccccccccC
Confidence 467789999999999999999999975 7888999999999999999999999886 67899999999654442 36
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
.+|.|++. +|+|..++..+.++| ||||++.+..|+.. +. ....+.|++.||.
T Consensus 113 ~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------Qv-------------~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 113 DFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIE---------QV-------------QKTVEALREHGFT 165 (247)
T ss_dssp SEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH---------HH-------------HHHHHHHHHTTEE
T ss_pred cccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHH---------HH-------------HHHHHHHHHCCCe
Confidence 79999863 589999999999999 99999999887632 11 2455778889998
Q ss_pred EEEE
Q 020307 311 NYTS 314 (328)
Q Consensus 311 ~v~~ 314 (328)
.++.
T Consensus 166 ~i~~ 169 (247)
T PF08704_consen 166 DIET 169 (247)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 7764
No 124
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.33 E-value=1.4e-11 Score=104.34 Aligned_cols=101 Identities=22% Similarity=0.432 Sum_probs=83.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC--CCCCccceEEec
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP--FASGFVDAVHAG 239 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp--~~~~~fD~i~~~ 239 (328)
..+||||||.|.++..++...|+..++|+|+....+..+.+++...+ ..|+.++++|+.. ++ ++++++|.|...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 38999999999999999999999999999999999999999998876 7899999999876 32 457899999875
Q ss_pred cccccCCCh-------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 240 AALHCWPSP-------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~d~-------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+ ||| ..+|+.+.++|+|||.+.+.|-.
T Consensus 96 F-----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 96 F-----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp S----------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred C-----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 4 666 37899999999999999998844
No 125
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.32 E-value=3.9e-11 Score=100.54 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=111.3
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCe-EEEEecCCCC--CC------CCCccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRL--PF------ASGFVD 234 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~~l--p~------~~~~fD 234 (328)
+|||||||||....++++..|..+..-.|+++......+..+...++ +|+ .-+..|+... |. ..++||
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCCCccccccccCCCCcc
Confidence 69999999999999999999988999999999887666666665443 221 1233455443 22 246899
Q ss_pred eEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCc-----chhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 235 AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST-----SLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 235 ~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
+|++.+++|..+-. ..+++.+.++|++||.|++..|....... ..+...++... ..+...+.+++.++.+++
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd-p~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD-PEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC-CCcCccCHHHHHHHHHHC
Confidence 99999999988744 58899999999999999999987763221 12233344333 457788999999999999
Q ss_pred CCeEEEEEE
Q 020307 308 GLTNYTSKV 316 (328)
Q Consensus 308 Gf~~v~~~~ 316 (328)
||+.++...
T Consensus 184 GL~l~~~~~ 192 (204)
T PF06080_consen 184 GLELEEDID 192 (204)
T ss_pred CCccCcccc
Confidence 998777543
No 126
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.2e-10 Score=102.78 Aligned_cols=141 Identities=16% Similarity=0.228 Sum_probs=102.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+....+.+|||+|||.|.++..+++..|..+++-+|+|...++.+++++..++ ..+..+...|... +..+ +||+|
T Consensus 154 l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~---~~~~~v~~s~~~~-~v~~-kfd~I 228 (300)
T COG2813 154 LPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG---VENTEVWASNLYE-PVEG-KFDLI 228 (300)
T ss_pred CCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC---CCccEEEEecccc-cccc-cccEE
Confidence 34445569999999999999999999999999999999999999999998875 3343556666543 2333 99999
Q ss_pred EeccccccCCCh-----HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 237 HAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 237 ~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+++=-+|-=.+. .+++++..+.|++||.|.++-.... .....|++.-=.+
T Consensus 229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l-------------------------~y~~~L~~~Fg~v 283 (300)
T COG2813 229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL-------------------------PYEKKLKELFGNV 283 (300)
T ss_pred EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC-------------------------ChHHHHHHhcCCE
Confidence 998666533222 3789999999999999999774111 1222333331134
Q ss_pred EEEEEeCcEEEEEEeC
Q 020307 312 YTSKVQQSFIMFAAQK 327 (328)
Q Consensus 312 v~~~~~~~~~~~~a~k 327 (328)
........|.++.++|
T Consensus 284 ~~la~~~gf~Vl~a~k 299 (300)
T COG2813 284 EVLAKNGGFKVLRAKK 299 (300)
T ss_pred EEEEeCCCEEEEEEec
Confidence 4446677888888876
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=3.1e-11 Score=114.46 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=95.6
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCcc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFV 233 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~f 233 (328)
.+...++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..+ ..++.+..+|...++ +.+++|
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhhhhhhhhccC
Confidence 3556788899999999999999888863 45699999999999999999998876 346899999998765 446789
Q ss_pred ceEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH
Q 020307 234 DAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL 284 (328)
Q Consensus 234 D~i~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 284 (328)
|.|++. +++.+-++ ..++|.++.+.|||||+++.++.......+......+
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~f 381 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRF 381 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHH
Confidence 999963 22322221 1456899999999999999999765544443333333
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.29 E-value=4.9e-11 Score=106.13 Aligned_cols=127 Identities=18% Similarity=0.142 Sum_probs=94.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|..+..+++.. ....|+++|+++.+++.++++++..+ ..++.++..|...++...+.||.
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG---VLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEecCCHHHhhhhccCCCE
Confidence 556678999999999999999988763 23589999999999999999998876 45789999998776655567999
Q ss_pred EEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH
Q 020307 236 VHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 286 (328)
Q Consensus 236 i~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 286 (328)
|++. .++.+-++. ..+|+.+.+.|||||+++.++.......+....+.+..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH
Confidence 9963 233222211 35899999999999999998866544333333333333
No 129
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.28 E-value=1.4e-10 Score=102.34 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=94.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CC-CCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~~fD~i~~~ 239 (328)
+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++... ++.++.+|+.+. +. ..++||+|+++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcchhcCCCEeEEEEC
Confidence 45899999999999999998876678999999999999999998753 247888998642 21 13579999986
Q ss_pred cc------cc--------cCC--------C----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCC
Q 020307 240 AA------LH--------CWP--------S----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN 293 (328)
Q Consensus 240 ~v------l~--------h~~--------d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (328)
-- +. |-+ | ...+++.+.++|||||++++.....
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--------------------- 219 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER--------------------- 219 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------------------
Confidence 31 11 110 1 1366778889999999999866321
Q ss_pred CCCHHHHHHHHHHCCCeEEEEEEeCcE
Q 020307 294 YLTEEEIEDLCTSCGLTNYTSKVQQSF 320 (328)
Q Consensus 294 ~~~~~~l~~ll~~~Gf~~v~~~~~~~~ 320 (328)
..+++..++++.||.........-+
T Consensus 220 --~~~~v~~~l~~~g~~~~~~~~~~~~ 244 (251)
T TIGR03704 220 --QAPLAVEAFARAGLIARVASSEELY 244 (251)
T ss_pred --hHHHHHHHHHHCCCCceeeEccccc
Confidence 2347888999999976554443334
No 130
>PRK04457 spermidine synthase; Provisional
Probab=99.26 E-value=4.3e-11 Score=106.19 Aligned_cols=110 Identities=10% Similarity=0.134 Sum_probs=85.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~i~~ 238 (328)
.++.+|||||||+|.++..+++..|..+++++|+++++++.|++.+...+. .+++.++.+|+.+. .-..++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 356799999999999999999988888999999999999999998764321 46899999997542 222468999997
Q ss_pred cccc-ccCC---ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 239 GAAL-HCWP---SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 239 ~~vl-~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
...- ...+ ....+++++.+.|+|||++++....
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 5311 1111 1268899999999999999996543
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=1e-10 Score=111.77 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=92.0
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.+...++.+|||+|||+|..+..+++.. ...+|+++|+|+.+++.++++++..+ ..++.++.+|+..++ ++++||
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG---ITIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC---CCeEEEEeCcccccc-cCCCCC
Confidence 3556678899999999999998888753 24589999999999999999998876 347899999998765 456899
Q ss_pred eEEec------cccccCC------C----------hHHHHHHHHhcccCCcEEEEEEeccCCCCcch
Q 020307 235 AVHAG------AALHCWP------S----------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279 (328)
Q Consensus 235 ~i~~~------~vl~h~~------d----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 279 (328)
+|++. .++.+-+ + ...+|.++.+.|||||+++.++....+..+..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~ 387 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENEL 387 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHH
Confidence 99963 2222111 1 13589999999999999999997654433333
No 132
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.25 E-value=6.5e-11 Score=100.06 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=74.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 229 (328)
..++.+|||+|||+|.++..+++.. +..+++++|+|+.+ . ..++.++++|+.+.+ ++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 4578899999999999999888875 44579999999854 1 446788889986643 34
Q ss_pred CCccceEEecccc--------ccCC---ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAAL--------HCWP---SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl--------~h~~---d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.++||+|++.... +|.. +...+++.+.++|+|||++++..+
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 6689999986432 2211 125789999999999999999764
No 133
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=4.7e-10 Score=100.28 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=99.6
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc--c
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA--A 241 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~--v 241 (328)
+|||+|||+|..+..++...+..+|+|+|+|+.+++.|++++...++ .++.++.+|+..- . .++||+|+++= +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~-~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEP-L-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccc-c-CCceeEEEeCCCCC
Confidence 79999999999999999999888999999999999999999998763 5667777776442 2 34899999971 1
Q ss_pred ---cccC------CCh--------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHH
Q 020307 242 ---LHCW------PSP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE 298 (328)
Q Consensus 242 ---l~h~------~d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
..+. .+| ..++.++.+.|+|||.+++..-. -..+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-----------------------~q~~ 244 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-----------------------TQGE 244 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-----------------------CcHH
Confidence 1111 122 35788899999999988886521 2356
Q ss_pred HHHHHHHHCC-CeEEEEEE--eCcEEEEEEe
Q 020307 299 EIEDLCTSCG-LTNYTSKV--QQSFIMFAAQ 326 (328)
Q Consensus 299 ~l~~ll~~~G-f~~v~~~~--~~~~~~~~a~ 326 (328)
.+.+++.+.| |..+.... .+...++.++
T Consensus 245 ~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 245 AVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred HHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 8999999999 66555333 2333444444
No 134
>PRK01581 speE spermidine synthase; Validated
Probab=99.24 E-value=3.1e-10 Score=103.23 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=101.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HHh--cCcCCCCCeEEEEecCCC-CCCCCCcc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQ--DNTILTSNLALVRADVCR-LPFASGFV 233 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~--~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~f 233 (328)
.....+||++|||+|..++.+.+..+..+++++|+++++++.|++. +.. .+....+++.++.+|..+ +....++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3456799999999999999999876567999999999999999962 111 011125799999999865 33345689
Q ss_pred ceEEeccccccCCC------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 234 DAVHAGAALHCWPS------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 234 D~i~~~~vl~h~~d------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
|+|++... ..... -..+++.+.+.|+|||++++..... +.... ....+.+.++++
T Consensus 228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp------~~~~~------------~~~~i~~tL~~a 288 (374)
T PRK01581 228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP------ADAPL------------VYWSIGNTIEHA 288 (374)
T ss_pred cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh------hhhHH------------HHHHHHHHHHHh
Confidence 99998732 11100 1468899999999999988864211 10000 012367889999
Q ss_pred CCeEEEEEEe-----CcEEEEEEeC
Q 020307 308 GLTNYTSKVQ-----QSFIMFAAQK 327 (328)
Q Consensus 308 Gf~~v~~~~~-----~~~~~~~a~k 327 (328)
||.+...... +.|...+|.|
T Consensus 289 f~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 289 GLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred CCceEEEEEecCCCCCceEEEEEeC
Confidence 9977764332 2255555543
No 135
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.8e-10 Score=110.10 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=88.7
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF 232 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~ 232 (328)
.+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++++..+ ..++.++.+|+..++ ++ ++
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~~-~~ 320 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG---LTNIETKALDARKVHEKFA-EK 320 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCCcccccchhc-cc
Confidence 3555678899999999999999998863 45699999999999999999998876 346999999997653 33 68
Q ss_pred cceEEecc------ccccCCCh----------------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 233 VDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 233 fD~i~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
||+|++.- ++.+-++. ..+|+++.++|||||+++.++...
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99999742 23322211 357999999999999999877543
No 136
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.22 E-value=1e-10 Score=100.70 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=88.1
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccceEEe
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHA 238 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~i~~ 238 (328)
...+||||||.|.++..+|+..|+..++|+|+....+..|.+++...+ ..|+.+++.|+..+- +++++.|-|..
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 358999999999999999999999999999999999999999999886 349999999985531 35569999997
Q ss_pred ccccccCCCh-------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 239 GAALHCWPSP-------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 239 ~~vl~h~~d~-------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++ ||| ..+|+.+.++|||||.+.+.|-.
T Consensus 126 ~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 126 NF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred EC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 54 666 36899999999999999998844
No 137
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.21 E-value=9.1e-11 Score=106.95 Aligned_cols=112 Identities=26% Similarity=0.311 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-------cCCCCCeEEEEecCCCCC----CC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALVRADVCRLP----FA 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-------~~~~~~i~~~~~d~~~lp----~~ 229 (328)
++.+|||+|||.|.-+..+.... -..++|+|++...++.|+++..... ........++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999988777777764 3589999999999999999983210 000235567888765321 22
Q ss_pred --CCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 230 --SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
...||+|.|.+.||+.=.. ..+|+.+.+.|+|||+++.++|+..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3599999999999998433 3689999999999999999999764
No 138
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.21 E-value=2e-10 Score=96.45 Aligned_cols=129 Identities=19% Similarity=0.288 Sum_probs=102.2
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---CCCccceEEec
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVHAG 239 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~i~~~ 239 (328)
-++|||||=+..+...-.. ..+|+.||+++. .-.+.+.|+.+.|. +++.||+|.++
T Consensus 53 lrlLEVGals~~N~~s~~~---~fdvt~IDLns~------------------~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG---WFDVTRIDLNSQ------------------HPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcccccC---ceeeEEeecCCC------------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence 6999999976554433222 337999999752 33467789888775 46789999999
Q ss_pred cccccCCChH---HHHHHHHhcccCCcE-----EEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 240 AALHCWPSPS---NAVAEISRILRSGGV-----FVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 240 ~vl~h~~d~~---~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
.||+++|+|. ..++.+.+.|+|+|. |+++.|..- ..+.++++.+.|+++++..||..
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C---------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC---------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------------hhcccccCHHHHHHHHHhCCcEE
Confidence 9999999995 789999999999999 999887531 15678999999999999999999
Q ss_pred EEEEEeCcEEEEEEeC
Q 020307 312 YTSKVQQSFIMFAAQK 327 (328)
Q Consensus 312 v~~~~~~~~~~~~a~k 327 (328)
++.+.......+..+|
T Consensus 177 ~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 177 VKYKKSKKLAYWLFRK 192 (219)
T ss_pred EEEEecCeEEEEEEee
Confidence 9987777776666554
No 139
>PRK00811 spermidine synthase; Provisional
Probab=99.21 E-value=1.3e-10 Score=104.42 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=84.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC--cCCCCCeEEEEecCCCC-CCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TILTSNLALVRADVCRL-PFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~i 236 (328)
.++.+||+||||+|..++.+.+.....+|+++|+++.+++.|++.+...+ ....+++.++.+|+... ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999887445689999999999999999886421 11157899999998542 2346789999
Q ss_pred EeccccccCCC----hHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
++...-.+.+. ...+++.+.+.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 98643222221 1567899999999999998754
No 140
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.18 E-value=4.6e-10 Score=100.54 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=111.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
-...+|+|.|.|..+..+...+| .+-|++++...+-.++..+. +.+..+.+|...- .| +-|+|++-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEee
Confidence 36899999999999999999888 89999999988887777532 4578888887543 33 3469999999
Q ss_pred cccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC--CC------cchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 242 LHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SS------TSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 242 l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
||||+|- .++|+++...|+|||.+++.+...+. .. ..+..+.+.......-...+.++++.++.++||.+
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPV 325 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCce
Confidence 9999877 48999999999999999999875442 11 11112222222223344568899999999999988
Q ss_pred EEEEE-eCcEEEEEEeC
Q 020307 312 YTSKV-QQSFIMFAAQK 327 (328)
Q Consensus 312 v~~~~-~~~~~~~~a~k 327 (328)
....- ...+.++.++|
T Consensus 326 ~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 326 CMVALTAYSYSVIEFHK 342 (342)
T ss_pred eEEEeccCccchheeCC
Confidence 87432 33344444443
No 141
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.16 E-value=5.3e-10 Score=92.78 Aligned_cols=103 Identities=10% Similarity=0.151 Sum_probs=78.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ..++.++.+|+.++++++.+||.|
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccccCCCEE
Confidence 4455678999999999999999999854 999999999999999988754 458999999999988777779999
Q ss_pred EeccccccCCChHHHHHHHHhc--ccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRI--LRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~--LkpgG~l~i~~ 269 (328)
+++-- .|+. ...+..+.+. +.++|.+++..
T Consensus 82 i~n~P-y~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLP-YNIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EECCC-cccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 87643 3332 3344444432 34677776644
No 142
>PRK03612 spermidine synthase; Provisional
Probab=99.15 E-value=3.2e-10 Score=110.08 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=94.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HHhcC--cCCCCCeEEEEecCCCC-CCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~--~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD 234 (328)
+++++|||+|||+|..++.+.+.....+++++|+++++++.++++ +...+ ....++++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456799999999999999998864336999999999999999983 32211 11146899999998652 22346899
Q ss_pred eEEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 235 AVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 235 ~i~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
+|++...-...+.+ ..+++.+.+.|||||++++...... . .. -...++.+.+++.||
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~---~---~~------------~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY---F---AP------------KAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc---c---ch------------HHHHHHHHHHHHcCC
Confidence 99997543322222 3578999999999999988653211 0 00 011367888889999
Q ss_pred e
Q 020307 310 T 310 (328)
Q Consensus 310 ~ 310 (328)
.
T Consensus 438 ~ 438 (521)
T PRK03612 438 A 438 (521)
T ss_pred E
Confidence 3
No 143
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=4.5e-11 Score=100.04 Aligned_cols=147 Identities=21% Similarity=0.294 Sum_probs=112.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
....++|||||-|...+.+...+ -.+++-+|.|-.|++.+++.-.. .-.+....+|-+.++|.++++|+|+++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp-----~i~~~~~v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDP-----SIETSYFVGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCC-----ceEEEEEecchhcccccccchhhhhhhh
Confidence 35689999999999999999987 55899999999999999874211 2345667789999999999999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchh-----hHHHHH-hhhccCCCCC-HHHHHHHHHHCCCeEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT-----GRVLRE-RILQNYNYLT-EEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~-~~~l~~ll~~~Gf~~v~ 313 (328)
.+|++.|....+..+...|||+|.++.+....+. ...+. .+.-+. ....|...|+ ..++..+|.++||....
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT-LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT-LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCccchhHHhcccc-HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 9999999999999999999999999887655431 11110 000011 2225555554 57899999999998776
Q ss_pred E
Q 020307 314 S 314 (328)
Q Consensus 314 ~ 314 (328)
.
T Consensus 225 v 225 (325)
T KOG2940|consen 225 V 225 (325)
T ss_pred e
Confidence 4
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.14 E-value=1e-09 Score=98.01 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=82.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEecCCC-CCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~-lp~~~~~fD~i~ 237 (328)
..+.+||+||||+|.++..+.+..+..+++++|+++++++.+++.+...+ ....+++.++.+|..+ +....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999999999999887655689999999999999999875422 1114678888888643 222256899999
Q ss_pred eccccccCCC----hHHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+...-..-+. ...+++.+.+.|+|||++++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 8654222111 2577899999999999999863
No 145
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.13 E-value=2.3e-09 Score=102.38 Aligned_cols=132 Identities=17% Similarity=0.282 Sum_probs=94.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ ..++.++.+|+.+ .++.+++
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHhhhhhhhhcCC
Confidence 4445678999999999999999998864 99999999999999999988765 4579999999854 2344568
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
||+|++.---. .....++.+.+ ++|+++++++..... + ..|+. .|.+.||++.
T Consensus 368 fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCnp~t----------l------------aRDl~-~L~~~gY~l~ 420 (443)
T PRK13168 368 FDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCNPAT----------L------------ARDAG-VLVEAGYRLK 420 (443)
T ss_pred CCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeChHH----------h------------hccHH-HHhhCCcEEE
Confidence 99998742110 11345555555 689998888762110 0 12443 3456899988
Q ss_pred EEEEeCcE
Q 020307 313 TSKVQQSF 320 (328)
Q Consensus 313 ~~~~~~~~ 320 (328)
+....+-|
T Consensus 421 ~i~~~DmF 428 (443)
T PRK13168 421 RAGMLDMF 428 (443)
T ss_pred EEEEeccC
Confidence 87655544
No 146
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.11 E-value=4e-10 Score=98.38 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=86.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-----CC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-----FA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-----~~ 229 (328)
....++++|||+|||+|..+..++.. .+..+++++|+++++++.|+++++..++ ..++.++.+|+.+. + .+
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHHhCCC
Confidence 34557889999999999988888775 3467999999999999999999998876 56899999998553 2 12
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.++||+|+...-= +....++..+.++|+|||++++...
T Consensus 142 ~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 142 KPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 4689999975421 2335788999999999999887553
No 147
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=1.7e-09 Score=111.05 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=96.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC-------------CCCCeEEEEecCCCCCC
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LTSNLALVRADVCRLPF 228 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-------------~~~~i~~~~~d~~~lp~ 228 (328)
+.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|++++..+++. ...++.++++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999887779999999999999999998764320 02479999999865321
Q ss_pred C-CCccceEEecc--------------ccccCC------------------Ch------HHHHHHHHhcccCCcEEEEEE
Q 020307 229 A-SGFVDAVHAGA--------------ALHCWP------------------SP------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~-~~~fD~i~~~~--------------vl~h~~------------------d~------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
. ...||+|+++= |.+|-| +. .+++.++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999871 111111 01 467788888999999988755
Q ss_pred eccCCCCcchhhHHHHHhhhccCCCCCHHHHH-HHHHHCCCeEEEEEE
Q 020307 270 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIE-DLCTSCGLTNYTSKV 316 (328)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~~Gf~~v~~~~ 316 (328)
-.. ..+.+. +++++.||+.++.+.
T Consensus 279 G~~-----------------------q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 279 GGR-----------------------PGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred Ccc-----------------------HHHHHHHHHHHHCCCCeeEEee
Confidence 211 124677 689999998877543
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.08 E-value=1.1e-09 Score=110.06 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=95.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++..+++. ..++.++++|+.+.- -..++||+|++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 3578999999999999999998753 36999999999999999999887641 147999999975421 11468999998
Q ss_pred cc-----------ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 239 GA-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 239 ~~-----------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
.- +.....+...+++.+.++|+|||.+++..... .++.+ .+.+.++
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~---------------------~~~~~--~~~~~~~ 671 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR---------------------GFKMD--EEGLAKL 671 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc---------------------cCChh--HHHHHhC
Confidence 52 11112233567888899999999998865321 11111 6777888
Q ss_pred CCeEEEE
Q 020307 308 GLTNYTS 314 (328)
Q Consensus 308 Gf~~v~~ 314 (328)
|+.+...
T Consensus 672 g~~~~~i 678 (702)
T PRK11783 672 GLKAEEI 678 (702)
T ss_pred CCeEEEE
Confidence 9876654
No 149
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.08 E-value=3.3e-10 Score=99.50 Aligned_cols=113 Identities=25% Similarity=0.355 Sum_probs=88.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-c--CCCCCeEEEEecCCC------CCCCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-T--ILTSNLALVRADVCR------LPFAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~--~~~~~i~~~~~d~~~------lp~~~ 230 (328)
.++..++|+|||.|.-+...-+.+ -..++|+||++-.+++|+++..... . ...-.+.|+.+|-.. +++++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 467889999999998887777765 3489999999999999999886532 1 001246788888643 34556
Q ss_pred CccceEEeccccccCC----ChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 231 GFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+||+|-|-+++|+-- ....+|+.+.+.|||||+++.+.|+.+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 6699999999988763 234789999999999999999999875
No 150
>PLN02366 spermidine synthase
Probab=99.07 E-value=2e-09 Score=97.26 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=83.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEecCCCC-C-CCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-P-FASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p-~~~~~fD~i 236 (328)
.++++||+||||.|..++.+++.....+++.+|+++.+++.+++.+...+. ...+++.++.+|.... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999874446899999999999999998764211 1257899999997432 1 225689999
Q ss_pred EeccccccCCC----hHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
++...-.+.+. ...+++.+.+.|+|||+++...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98654322221 1367999999999999997754
No 151
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.05 E-value=7.6e-10 Score=93.11 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=106.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD 234 (328)
.+...+.+|||...|-|+++....++|. ..|+.+|.+++.++.|.-+-=..++. ..++.++.+|+.++ .|++.+||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~-~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELF-EIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCcccc-ccccEEecccHHHHHhcCCccccc
Confidence 4556799999999999999999999973 48999999999999886542222221 34689999998654 37799999
Q ss_pred eEEeccc-cccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 235 AVHAGAA-LHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 235 ~i~~~~v-l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+|+..-- +.+-. -...+.+|++|+|||||+++-.+-+..... +. .--+..+.+.|+++||++
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry--------rG-------~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY--------RG-------LDLPKGVAERLRRVGFEV 272 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc--------cc-------CChhHHHHHHHHhcCcee
Confidence 9984210 00000 115788999999999999998875543111 11 012457788999999998
Q ss_pred EEEEEeCcEEEEEEeCC
Q 020307 312 YTSKVQQSFIMFAAQKP 328 (328)
Q Consensus 312 v~~~~~~~~~~~~a~k~ 328 (328)
++... ....+.|+||
T Consensus 273 v~~~~--~~~gv~A~k~ 287 (287)
T COG2521 273 VKKVR--EALGVVAVKP 287 (287)
T ss_pred eeeeh--hccceEEecC
Confidence 87332 2344566665
No 152
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.05 E-value=1.1e-09 Score=102.40 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=80.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--C--CCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~~fD~ 235 (328)
.++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++..+++. ..++.++.+|+.+.- + ..++||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 357899999999999988766544 458999999999999999999887641 147899999986531 1 2468999
Q ss_pred EEeccccccC---------CChHHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCW---------PSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~---------~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|++.---.-- .+-..+++.+.++|+|||.++..+.
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9986321000 1123445567899999999998664
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=2.1e-09 Score=90.98 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC----c--------------------------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN----T-------------------------- 210 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~----~-------------------------- 210 (328)
.+..+|||||.+|.++..+++.+....++|+||++..++.|++.++.-- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4578999999999999999999766789999999999999998765210 0
Q ss_pred ---------CCCCCeEEEEecCCCCCCCCCccceEEeccccccC----CC--hHHHHHHHHhcccCCcEEEEEEeccCCC
Q 020307 211 ---------ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW----PS--PSNAVAEISRILRSGGVFVGTTFLRYTS 275 (328)
Q Consensus 211 ---------~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~----~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 275 (328)
....|..+...|+. .+....||+|+|..+--++ .| ...+++.+.++|.|||+|++.. ..
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP-Qp--- 211 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP-QP--- 211 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC-Cc---
Confidence 00111222222232 2345679999987653222 23 3589999999999999998844 21
Q ss_pred Ccchh--hHHHHHh-hhccCCCCCHHHHHHHHHHC--CCeEEE
Q 020307 276 STSLT--GRVLRER-ILQNYNYLTEEEIEDLCTSC--GLTNYT 313 (328)
Q Consensus 276 ~~~~~--~~~~~~~-~~~~~~~~~~~~l~~ll~~~--Gf~~v~ 313 (328)
+..+. .+..... ......++.++.+..++.+. ||+.++
T Consensus 212 WksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 212 WKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred hHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 22220 1111111 11223467789999998877 666554
No 154
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.04 E-value=8.1e-09 Score=90.80 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=109.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh----cC--------------------------
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ----DN-------------------------- 209 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~-------------------------- 209 (328)
....+||--|||.|+++..++..|. .+.|.|.|--|+-...-.+.. ..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3457999999999999999999987 999999999887654432210 00
Q ss_pred -------cCCCCCeEEEEecCCCCCCCC---CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch
Q 020307 210 -------TILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279 (328)
Q Consensus 210 -------~~~~~~i~~~~~d~~~lp~~~---~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 279 (328)
+....++....||+.++...+ ++||+|+..+-|.--++....++.|.++|||||+++=..|..+.....
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~- 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM- 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC-
Confidence 011346778888887765444 799999999888877788899999999999999888766655422110
Q ss_pred hhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 280 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
. ......--++.+++..+++..||++++...
T Consensus 212 -----~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 -----S-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -----C-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 011223568999999999999999887544
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.03 E-value=5.5e-09 Score=93.98 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=101.5
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD 234 (328)
+....+|..|||-=||||.++..+.-.|. +++|.|++..|++-|+.+++..+ .....+... |+.++|+++.++|
T Consensus 192 La~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~~lpl~~~~vd 266 (347)
T COG1041 192 LARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDATNLPLRDNSVD 266 (347)
T ss_pred HhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccccCCCCCCccc
Confidence 34556889999999999999999998876 99999999999999999998865 345656665 9999999988999
Q ss_pred eEEeccccc-----cCCC----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 235 AVHAGAALH-----CWPS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 235 ~i~~~~vl~-----h~~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
.|++.---- .... -..+|+.+.++||+||++++..+. .....++
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~---------------------------~~~~~~~ 319 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR---------------------------DPRHELE 319 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC---------------------------cchhhHh
Confidence 999842110 0011 147899999999999999997752 2235578
Q ss_pred HCCCeEEEEEE
Q 020307 306 SCGLTNYTSKV 316 (328)
Q Consensus 306 ~~Gf~~v~~~~ 316 (328)
..||+++....
T Consensus 320 ~~~f~v~~~~~ 330 (347)
T COG1041 320 ELGFKVLGRFT 330 (347)
T ss_pred hcCceEEEEEE
Confidence 89998887644
No 156
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.03 E-value=3e-09 Score=89.87 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCcCH----HHHHHHHh-----CCCceEEEEeCCHHHHHHHHHHH-------------------HhcC-c-
Q 020307 161 QGGLLVDVSCGSGL----FSRKFAKS-----GTYSGVVALDFSENMLRQCYDFI-------------------KQDN-T- 210 (328)
Q Consensus 161 ~~~~vLDiGcG~G~----~~~~l~~~-----~~~~~v~g~D~s~~~~~~a~~~~-------------------~~~~-~- 210 (328)
+.-+|+.+||++|. ++..+.+. ....+++|+|+|+.+++.|++-. ...+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999997 33333341 12468999999999999998311 0000 0
Q ss_pred ----CCCCCeEEEEecCCCCCCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 211 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 211 ----~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....+.|...|+.+.+...+.||+|+|.+||-++... .++++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 01247899999998744456789999999999999766 588999999999999999954
No 157
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.01 E-value=8.8e-09 Score=94.09 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=75.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++..+ ..++.++++|+.++.. ..+.||+|++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~---l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELG---LTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 3568999999999999999999764 99999999999999999998766 4579999999976532 2357999997
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.-- .- .....+.++...++|+++++++.
T Consensus 247 dPP--r~-G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 247 NPP--RR-GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCC--CC-CccHHHHHHHHHcCCCeEEEEEC
Confidence 621 00 01122333344467887777765
No 158
>PHA03412 putative methyltransferase; Provisional
Probab=98.98 E-value=4.2e-09 Score=90.42 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++ ..++.++.+|+...++ +++||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccCCEEEEcchhcccc-cCCccEEE
Confidence 36799999999999999988752 245899999999999999975 4468899999977654 56899999
Q ss_pred eccccccC--CC----------hHHHHHHHHhcccCCcE
Q 020307 238 AGAALHCW--PS----------PSNAVAEISRILRSGGV 264 (328)
Q Consensus 238 ~~~vl~h~--~d----------~~~~l~~~~r~LkpgG~ 264 (328)
++==..-. .+ ...+++.+.+++++|+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 97322111 11 24578888886677664
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.98 E-value=3.5e-09 Score=90.22 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=90.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ecCCC-CC-CCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCR-LP-FASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~-lp-~~~~~ 232 (328)
+...+.++|||||.+.|+.+..++...+ +.+++.+|++++..+.|++++++.++ ..++..+. +|..+ +. ...++
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~~l~~~~~~~ 132 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALDVLSRLLDGS 132 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHHHHHhccCCC
Confidence 3455788999999999999999999876 78999999999999999999999986 56688888 47633 22 34689
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
||+|+....= .+-..++..+.++|+|||++++-.....
T Consensus 133 fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 133 FDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred ccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 9999964421 1336789999999999999998665544
No 160
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.96 E-value=3.4e-09 Score=102.48 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=87.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~ 237 (328)
..+..+||||||.|.++..++...|+..++|+|++...+..+.++....+ ..|+.++..|+..+. ++++++|.|+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 34678999999999999999999999999999999999999988887766 568888888874332 6688899999
Q ss_pred eccccccCCCh-------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 238 AGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~~d~-------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.++ ||| ..+|+.+.++|||||.+.+.|-
T Consensus 423 i~F-----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 423 ILF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEC-----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 754 565 3689999999999999999883
No 161
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.95 E-value=4.8e-09 Score=93.60 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=79.8
Q ss_pred CCeEEEEcCCcCH----HHHHHHHhC----CCceEEEEeCCHHHHHHHHHHH------------------Hhc-----C-
Q 020307 162 GGLLVDVSCGSGL----FSRKFAKSG----TYSGVVALDFSENMLRQCYDFI------------------KQD-----N- 209 (328)
Q Consensus 162 ~~~vLDiGcG~G~----~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~------------------~~~-----~- 209 (328)
.-+|+..||++|. ++..+.+.. ...+++|+|+|+.+++.|++-. ... +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999997 333333432 1357999999999999998541 000 0
Q ss_pred --c--CCCCCeEEEEecCCCCCCC-CCccceEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEE
Q 020307 210 --T--ILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 210 --~--~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+ .....+.|...|+...+++ .+.||+|+|.+|+.|+.. ..++++.+.+.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0 0124678889998775433 578999999999999965 4689999999999999988744
No 162
>PLN02476 O-methyltransferase
Probab=98.94 E-value=7.6e-09 Score=91.64 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=87.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-C----C
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-F----A 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~----~ 229 (328)
+...+.++|||||+++|+.+..++... +...++.+|.+++..+.|++.++..|+ ..++.++.+|+.+ ++ + .
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhccc
Confidence 345578899999999999999998753 356899999999999999999999886 5689999999844 22 1 1
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.++||+|+...-= .+-..++..+.++|+|||++++-...
T Consensus 192 ~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 192 GSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 3689999975531 13357789999999999998885543
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.93 E-value=9.3e-09 Score=85.57 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=76.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-C--C-CCCCccc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L--P-FASGFVD 234 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l--p-~~~~~fD 234 (328)
..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|..+ . . ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3467899999999999999999984456999999999 99999998877541114567777776643 1 1 2346899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+|+...+++.-.....+++.+.++|+|+|.+++....+.
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRR 160 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEec
Confidence 999999998776778899999999999999777776553
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.93 E-value=4.9e-09 Score=89.26 Aligned_cols=109 Identities=14% Similarity=0.210 Sum_probs=86.4
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-----CCC
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----~~~ 230 (328)
...+.++|||||+++|+.+..+++..+ +++++.+|++++..+.|++.++..++ ..+++++.+|+.+ ++ ...
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhccCC
Confidence 345678999999999999999998754 57999999999999999999998876 5789999999854 22 113
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++||+|+...-= .+-...+..+.++|+|||.+++-...
T Consensus 120 ~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 120 GQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp TSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred CceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 589999976531 13457788999999999999986543
No 165
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=1.8e-08 Score=96.02 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=79.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|++++...+ ..++.++.+|+.+. ++.+++
T Consensus 288 l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 288 LELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred hccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHHHHHhcCCC
Confidence 3445678999999999999999998865 89999999999999999988766 46899999998642 233567
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
||+|++.-- ...-...+++.+.+ ++|++.++++.
T Consensus 363 ~D~vi~dPP--r~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 363 PDVLLLDPP--RKGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCEEEECcC--CCCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 999996432 01112455666554 88988877754
No 166
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.92 E-value=1.1e-09 Score=102.23 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=84.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEE---eCCHHHHHHHHHHHHhcCcCCCCCeEEEEec--CCCCCCCCCccceEE
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLALVRAD--VCRLPFASGFVDAVH 237 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d--~~~lp~~~~~fD~i~ 237 (328)
..+||+|||+|.|+..|.+++- .+..+ |..+..++.|.++ .+..+.+- ...+||++++||+|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvpa~~~~~~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVPAMIGVLGSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------CcchhhhhhccccccCCccchhhhh
Confidence 4789999999999999999852 22222 3444555555543 23333333 468999999999999
Q ss_pred eccccccCC-ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 238 AGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 238 ~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
|..++-.+. +-..+|-++.|+|+|||+++.+.+-.+... .+.... ....+.++.+..-++.+.
T Consensus 187 csrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~----~~~~~~---------~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 187 CSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRT----DEDLEE---------EWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred cccccccchhcccceeehhhhhhccCceEEecCCcccccc----hHHHHH---------HHHHHHHHHHHHHHHHhe
Confidence 999986664 335789999999999999999886543100 000000 124567777777777665
No 167
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.91 E-value=1.7e-08 Score=85.65 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~i~~~ 239 (328)
++.+|||+|||+|.++..++.++ ..+|+++|.++.+++.++++++..+ ..++.++.+|+.+ ++....+||+|++.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence 56799999999999998765554 3589999999999999999988766 3479999999854 22224579999986
Q ss_pred cccccCCChHHHHHHHHh--cccCCcEEEEEEec
Q 020307 240 AALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~ 271 (328)
=-.. -.-...+++.+.. +|+|++++++....
T Consensus 129 PPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 129 PPFR-KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCC-CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 4321 1112345555554 37899988887643
No 168
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=5.6e-09 Score=90.80 Aligned_cols=100 Identities=25% Similarity=0.408 Sum_probs=81.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
..+..++|+|||.|..+. ..|..-++|.|++...+..+++ ........+|+.++|+++.+||.+++.
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~---------~~~~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR---------SGGDNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc---------CCCceeehhhhhcCCCCCCccccchhh
Confidence 357789999999996553 2255679999999998888775 222267889999999999999999999
Q ss_pred cccccCCCh---HHHHHHHHhcccCCcEEEEEEecc
Q 020307 240 AALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.|+||+..- ..+++++.|+|+|||...+..+..
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 999999754 478999999999999977766543
No 169
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.85 E-value=8.6e-09 Score=94.76 Aligned_cols=111 Identities=27% Similarity=0.367 Sum_probs=96.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++..++|+|||.|.....++... ...++|+|.++..+..+.......++ ...-.++.+|+.+.|++++.||.+-+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~l--~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAYL--DNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHHh--hhhcceehhhhhcCCCCccccCcEEEE
Confidence 466689999999999999988875 46899999999999888877766554 344555889999999999999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+.+|.+++..+++|+.|++||||++++.+....
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 9999999999999999999999999999877654
No 170
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.85 E-value=5.2e-08 Score=90.99 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=76.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~ 238 (328)
.++.+|||++||+|.++..++..+. +|+|+|+++.+++.|+++++..+ ..++.++.+|+.+... ..++||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLG---LDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 3567999999999999999997764 89999999999999999988766 3489999999865321 1246999987
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.=--. .-...+++.+. .++|++.++++.
T Consensus 307 DPPr~--G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRR--GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCC--CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 52211 11134555554 479999888876
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.82 E-value=1.9e-08 Score=89.25 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=64.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++.. ..++.++.+|+.+++++ .||.|
T Consensus 25 ~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 25 AEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred cCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccCCch--hceEE
Confidence 4455788999999999999999999864 899999999999999987754 35899999999887764 48998
Q ss_pred Eeccc
Q 020307 237 HAGAA 241 (328)
Q Consensus 237 ~~~~v 241 (328)
+++--
T Consensus 96 v~NlP 100 (258)
T PRK14896 96 VSNLP 100 (258)
T ss_pred EEcCC
Confidence 88644
No 172
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.82 E-value=2.2e-08 Score=83.71 Aligned_cols=108 Identities=22% Similarity=0.325 Sum_probs=78.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCce---------EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
..++..|||--||+|.++.+.+..+.+.. ++|.|+++.+++.++++++..+. ...+.+...|+.++++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--EDYIDFIQWDARELPLP 103 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGGGT
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CCceEEEecchhhcccc
Confidence 45678999999999999998887765545 88999999999999999998775 56789999999999977
Q ss_pred CCccceEEeccccccC-CCh-------HHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCW-PSP-------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~-~d~-------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
++++|+|+++--.-.- .+. ..+++++.++|++ ..+++.+
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 8899999986332111 111 3568899999999 4344433
No 173
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.80 E-value=8.4e-08 Score=84.61 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCeEEEEcCCcCH----HHHHHHHhCC-----CceEEEEeCCHHHHHHHHHHHHh-----cCc-----------------
Q 020307 162 GGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ-----DNT----------------- 210 (328)
Q Consensus 162 ~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~-----~~~----------------- 210 (328)
.-+|+-+||++|. ++..+.+.++ ..+++|.|+|..+++.|+.-.=. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996 4444445442 57899999999999999731100 111
Q ss_pred ----CCCCCeEEEEecCCCCCCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 211 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 211 ----~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....|.|...|+...++..+.||+|+|.+||-++..+ .++++.++..|+|||+|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 01235778888886655346779999999999999766 488999999999999999954
No 174
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.80 E-value=1.8e-08 Score=90.26 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=82.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
-+++.|||+|||+|-++...++.| ..+|+++|.|. +++.|++.+..+++ ...++++.+.++++.+|..++|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N~~--~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDNGL--EDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhcCc--cceEEEeecceEEEecCccceeEEeeh
Confidence 468899999999999999999998 56899999876 45899998888775 556899999998876667899999986
Q ss_pred cccccC---CChHHHHHHHHhcccCCcEEE
Q 020307 240 AALHCW---PSPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 240 ~vl~h~---~d~~~~l~~~~r~LkpgG~l~ 266 (328)
|.=..+ .-...+|-.=-+.|+|||.++
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 653222 123456666678999999875
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.79 E-value=8.9e-08 Score=90.91 Aligned_cols=102 Identities=15% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
++..|||||||+|-++...++.+ ...+|+++|-++.+....++++...+. ..+|+++.+|++++..++ ++|+|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v~lpe-kvDII 262 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREVELPE-KVDII 262 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTSCHSS--EEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCCCCCC-ceeEE
Confidence 35789999999999987776653 345899999999988887777666654 678999999999987654 89999
Q ss_pred EeccccccCC---ChHHHHHHHHhcccCCcEEE
Q 020307 237 HAGAALHCWP---SPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 237 ~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~ 266 (328)
++-.. ..+. --...|....|.|||||+++
T Consensus 263 VSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 97432 1221 12356889999999999874
No 176
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.79 E-value=1.3e-07 Score=85.83 Aligned_cols=80 Identities=13% Similarity=0.087 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEE-ecCCCCC----CCCCccc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD 234 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~-~d~~~lp----~~~~~fD 234 (328)
++.++||||||+|.....++...+..+++|+|+++.+++.|++++... ++ ..++.+.. .|...+. .+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l--~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL--NGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC--cCcEEEEEccchhhhhhcccccCCceE
Confidence 567999999999988888877766779999999999999999999886 54 45677754 3332221 2366899
Q ss_pred eEEecccc
Q 020307 235 AVHAGAAL 242 (328)
Q Consensus 235 ~i~~~~vl 242 (328)
+|+|+==+
T Consensus 192 livcNPPf 199 (321)
T PRK11727 192 ATLCNPPF 199 (321)
T ss_pred EEEeCCCC
Confidence 99998543
No 177
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.8e-08 Score=80.78 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=85.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
..+.+|+|+|||||.++...+-.|+ .+|+|+|+++++++.++++..+. ..++.|+++|+... .+.+|.++++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhc---CCccceEEEC
Confidence 4677999999999999999998884 48999999999999999998872 66899999999886 4678988876
Q ss_pred cc----cccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 240 AA----LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 240 ~v----l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
=- ..| .|. .+|....+.- ..+.+-.+ .-+.+-+++..+.+|+++...
T Consensus 116 PPFG~~~rh-aDr-~Fl~~Ale~s----~vVYsiH~----------------------a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 116 PPFGSQRRH-ADR-PFLLKALEIS----DVVYSIHK----------------------AGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred CCCcccccc-CCH-HHHHHHHHhh----heEEEeec----------------------cccHHHHHHHHHhcCCeEEEE
Confidence 22 233 333 3333333322 11111111 125677888899999876654
No 178
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.77 E-value=2.4e-08 Score=89.22 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=61.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++ +|+|+|+++.+++.+++++. ..++.++.+|+.++++++-.+|.|
T Consensus 38 l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 38 AGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred cCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhcCCHHHcCcceE
Confidence 4455778999999999999999999976 99999999999999988653 358999999998887653224777
Q ss_pred Eec
Q 020307 237 HAG 239 (328)
Q Consensus 237 ~~~ 239 (328)
+++
T Consensus 110 v~N 112 (272)
T PRK00274 110 VAN 112 (272)
T ss_pred EEe
Confidence 765
No 179
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.76 E-value=3.5e-08 Score=86.30 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=85.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-C-----
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-F----- 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~----- 228 (328)
+...+.++|||||+++|+.+..++.. .++.+++.+|.+++..+.|++.++..|+ ..++.++.+|+.+ ++ +
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhccc
Confidence 34456789999999999999999876 3467999999999999999999999886 6899999999844 22 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..++||+|+...-= .+....+..+.++|+|||++++-.
T Consensus 153 ~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 153 YHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcC
Confidence 13689999976531 123467888899999999988744
No 180
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=1e-07 Score=82.31 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC-----CCCCCCCccce
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-----RLPFASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-----~lp~~~~~fD~ 235 (328)
++..|||+|||+|..+..+....+..+++++|.|+.++..|.++.....+ ..++.++..+++ ..+..++++|+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l--~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL--SGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--cCceEEEecccccccccccccccCceeE
Confidence 45589999999999999999988888999999999999999999888765 556666644332 23455789999
Q ss_pred EEecccc-cc-----C-------CC-------------hHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAAL-HC-----W-------PS-------------PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl-~h-----~-------~d-------------~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++++--. .+ + .+ ...++.-+.|.|+|||.+.+....
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 9987211 00 0 00 123567788999999999987753
No 181
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.74 E-value=1.7e-07 Score=83.38 Aligned_cols=106 Identities=11% Similarity=0.156 Sum_probs=85.0
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC-CCCCeEEEEecCCCC-CCCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL-PFASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~~~i~~~~~d~~~l-p~~~~~fD~i~~~ 239 (328)
.++||-||.|.|..++.+.+..+..+++.+|++++.++.+++.+...... ..+++.++..|..+. .-...+||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 36999999999999999999987789999999999999999998764311 147899999997543 2123489999986
Q ss_pred cccccCCCh------HHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSP------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..=. . .| ..+++.+.+.|+++|+++...
T Consensus 157 ~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 5411 1 22 688999999999999999974
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.73 E-value=5e-08 Score=87.83 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=64.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+. ..++.++.+|+.+.++ ..||.|
T Consensus 32 ~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~~~~--~~~d~V 105 (294)
T PTZ00338 32 AAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALKTEF--PYFDVC 105 (294)
T ss_pred cCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhhhcc--cccCEE
Confidence 4455778999999999999999999865 899999999999999998876432 4689999999987664 368988
Q ss_pred Eec
Q 020307 237 HAG 239 (328)
Q Consensus 237 ~~~ 239 (328)
+++
T Consensus 106 vaN 108 (294)
T PTZ00338 106 VAN 108 (294)
T ss_pred Eec
Confidence 875
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.72 E-value=1.4e-07 Score=83.56 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=61.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc--
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD-- 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD-- 234 (328)
+...++.+|||+|||+|.++..+++.++ .++++|+++.+++.++.++.. ..++.++.+|+..++++ .+|
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCChh--HcCCc
Confidence 4455678999999999999999999986 799999999999999887643 45899999999888764 466
Q ss_pred -eEEec
Q 020307 235 -AVHAG 239 (328)
Q Consensus 235 -~i~~~ 239 (328)
+|+++
T Consensus 96 ~~vvsN 101 (253)
T TIGR00755 96 LKVVSN 101 (253)
T ss_pred ceEEEc
Confidence 55543
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.9e-06 Score=70.23 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=95.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+.......+||||||+|..+..|++. +++..+.++|+++.+++..++-+..+ ..++..++.|+..- +..++.|+
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~-l~~~~VDv 113 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSG-LRNESVDV 113 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhh-hccCCccE
Confidence 33344678999999999999999886 67778999999999999887776654 45688899998542 34589999
Q ss_pred EEecccc-----ccCC------------C----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 236 VHAGAAL-----HCWP------------S----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 236 i~~~~vl-----~h~~------------d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
++.+--. +.+. + ..+++..+-.+|.|.|++++.....+
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------------------- 172 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------------------- 172 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc---------------------
Confidence 9987321 1110 0 13567777788899999999774332
Q ss_pred CCHHHHHHHHHHCCCeEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~ 313 (328)
.++++-++++.-||....
T Consensus 173 -~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 173 -KPKEILKILEKKGYGVRI 190 (209)
T ss_pred -CHHHHHHHHhhcccceeE
Confidence 356777899999996544
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7e-08 Score=80.19 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=83.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHHhcCc-------CCCCCeEEEEecCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~~d~~~lp~~ 229 (328)
..|+.+.||+|.|+|+++..++.. .++..++|+|.-++.++.+++++...-. ....++.++.+|-...-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 568999999999999999888854 2333569999999999999998875321 1245788999998776667
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+||.|.+... ..+..+++...|+|||++++..-
T Consensus 160 ~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 889999998753 34556788889999999998653
No 186
>PLN02823 spermine synthase
Probab=98.70 E-value=1.2e-07 Score=86.68 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=81.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEecCCCC-CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~i~ 237 (328)
...++||.||+|.|..++.+.+..+..+++.+|+++++++.|++.+...+ ....+++.++.+|.... ....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 34679999999999999999887655689999999999999999875321 11157899999998542 33457899999
Q ss_pred eccccccCC-C------hHHHHH-HHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWP-S------PSNAVA-EISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~-d------~~~~l~-~~~r~LkpgG~l~i~~ 269 (328)
+... .... . ...+++ .+.+.|+|||++++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8632 1110 1 135677 8999999999987753
No 187
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.1e-06 Score=75.91 Aligned_cols=130 Identities=19% Similarity=0.324 Sum_probs=103.1
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC--CCCc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--ASGF 232 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~ 232 (328)
.+...||.+|+|-|.|+|.++.++++. +|..+++-+|+.+...+.|++.++++++ ..++++..-|+....| .+..
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeecccCCccccccc
Confidence 477789999999999999999999987 6778999999999999999999999986 8899999999977554 3577
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCc-EEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+|+|++ -+|.|..++-.+...||.+| ++....|. .+... .--++|+.+||..
T Consensus 178 aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPC---------IEQvq-------------rtce~l~~~gf~~ 230 (314)
T KOG2915|consen 178 ADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPC---------IEQVQ-------------RTCEALRSLGFIE 230 (314)
T ss_pred cceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHH---------HHHHH-------------HHHHHHHhCCCce
Confidence 888886 45889889999999999877 55444332 11111 2336678889876
Q ss_pred EEE
Q 020307 312 YTS 314 (328)
Q Consensus 312 v~~ 314 (328)
++.
T Consensus 231 i~~ 233 (314)
T KOG2915|consen 231 IET 233 (314)
T ss_pred EEE
Confidence 654
No 188
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.64 E-value=4.2e-07 Score=72.91 Aligned_cols=109 Identities=17% Similarity=0.340 Sum_probs=90.4
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA 229 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~ 229 (328)
.+....+..|||+|.|+|-++..+.+++ ....++.+|.|++.+....+. .+.+.++.+|+.++. +.
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccccchhhHHHHHhhcC
Confidence 3455678899999999999999999885 456799999999999998886 567779999987764 45
Q ss_pred CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEecc
Q 020307 230 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
...||.|++.--+-.++-. .++|+++...|.+||.++..++..
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 6789999998777766533 478999999999999999988763
No 189
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.64 E-value=2e-07 Score=86.99 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=81.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
+.+|||++||+|.++..++.......|+++|+++.+++.++++++.++ ..++.+..+|+..+....+.||+|++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---~~~~~v~~~Da~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---LENEKVFNKDANALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCceEEEhhhHHHHHhhcCCCCEEEECC-
Confidence 468999999999999999876544589999999999999999998766 4467789999865422145799999843
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 242 LHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 242 l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+..++..+.+.+++||+++++.
T Consensus 134 ---~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 ---FGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---CCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2456788888888899999999983
No 190
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.63 E-value=4.4e-08 Score=85.72 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=96.5
Q ss_pred cCCCeEEEEcCCcCHHHHH-HHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-------------CC------------C
Q 020307 160 AQGGLLVDVSCGSGLFSRK-FAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------------IL------------T 213 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~-l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------------~~------------~ 213 (328)
.++.++||||||.--+-.. +.+.. .+++..|.++..++..++-++..+. .. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3577999999998543222 22223 3899999999998877655543211 00 0
Q ss_pred CCe-EEEEecCCCCC-CCC-----CccceEEeccccccCC-ChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhH
Q 020307 214 SNL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 282 (328)
Q Consensus 214 ~~i-~~~~~d~~~lp-~~~-----~~fD~i~~~~vl~h~~-d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 282 (328)
..| .++.+|..+.+ +.. .+||+|++.++|+... |.. .+++++.++|||||.|++.......... .+
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~--vG- 209 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM--VG- 209 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE--ET-
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE--EC-
Confidence 112 36678886543 332 2599999999998874 553 7899999999999999998865432110 00
Q ss_pred HHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE------eCcEEEEEEeC
Q 020307 283 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV------QQSFIMFAAQK 327 (328)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~------~~~~~~~~a~k 327 (328)
...-+....+++.+++.|+++||.+.+... .....+++|||
T Consensus 210 ----~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 210 ----GHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ----TEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ----CEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 111234467899999999999998887542 12236667765
No 191
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.62 E-value=3e-07 Score=76.91 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=82.5
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 243 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~ 243 (328)
+++|||+|.|.=+.-++-..|+.+++.+|.+..-+...+......+ ..|+.++.+.+++ +....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 8999999999999888888888899999999998888888877776 5689999999988 445789999999886
Q ss_pred cCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 244 CWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 244 h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....++.-+...+++||+++..-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456788899999999999998865
No 192
>PRK04148 hypothetical protein; Provisional
Probab=98.61 E-value=4.9e-07 Score=71.01 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=69.8
Q ss_pred cCCCeEEEEcCCcCH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEE
Q 020307 160 AQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~ 237 (328)
.++.+|||||||+|. ++..|++.|. +|+++|+++..++.++++ .+.++.+|+.+..+. -+.+|+|.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCHHHHhcCCEEE
Confidence 356789999999996 8888998876 999999999999888763 568899999876533 35689998
Q ss_pred eccccccCCChHHHHHHHHhcccC-CcEEEEEEeccC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRY 273 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~~ 273 (328)
+..- |..+..-+.++-+. |.-+++......
T Consensus 83 sirp------p~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 83 SIRP------PRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EeCC------CHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 7553 44444445555443 455666665443
No 193
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=5.2e-07 Score=76.13 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-C-CCC-ccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-ASG-FVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~~-~fD~i 236 (328)
.+.++||++||+|.++..++.++. ..|+++|.++.+++.++++++..+. ..++.++.+|+... . + ... .||+|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~--~~~~~~~~~D~~~~l~~~~~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS--GEQAEVVRNSALRALKFLAKKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC--cccEEEEehhHHHHHHHhhccCCCceEE
Confidence 578999999999999999999974 4799999999999999999887653 34688999998432 2 1 122 47887
Q ss_pred EeccccccCCChHHHHHHHH--hcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~ 270 (328)
+..=-.. -......+..+. .+|+++|.+++...
T Consensus 126 ~~DPPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 126 YLDPPFF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred EECcCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 7643221 112234455443 36888888777654
No 194
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.58 E-value=1.3e-06 Score=81.37 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=84.1
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CC-----------
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FA----------- 229 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~----------- 229 (328)
.+|||++||+|.++..+++... +|+|+|+++.+++.+++++...+ ..++.++.+|+.+. + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHhhcccccccccc
Confidence 5799999999999999988765 89999999999999999988766 45899999998652 1 10
Q ss_pred ---CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 230 ---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
...||+|++.=- .-.-...+++.+. +|+++++++..-. . -..++..+. +
T Consensus 283 ~~~~~~~D~v~lDPP--R~G~~~~~l~~l~---~~~~ivyvSC~p~----------t------------larDl~~L~-~ 334 (362)
T PRK05031 283 DLKSYNFSTIFVDPP--RAGLDDETLKLVQ---AYERILYISCNPE----------T------------LCENLETLS-Q 334 (362)
T ss_pred cccCCCCCEEEECCC--CCCCcHHHHHHHH---ccCCEEEEEeCHH----------H------------HHHHHHHHc-C
Confidence 125899997321 0000134444444 3778877766210 0 023566554 3
Q ss_pred CCCeEEEEEEeCcE
Q 020307 307 CGLTNYTSKVQQSF 320 (328)
Q Consensus 307 ~Gf~~v~~~~~~~~ 320 (328)
||++.+....+-|
T Consensus 335 -gY~l~~v~~~DmF 347 (362)
T PRK05031 335 -THKVERFALFDQF 347 (362)
T ss_pred -CcEEEEEEEcccC
Confidence 8988876554444
No 195
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.58 E-value=2e-08 Score=83.05 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.++||+|.|.|..+..++.... +|++.|.|..|....+++ ..++--. .+-.+ .+-+||+|.|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk--------~ynVl~~-~ew~~---t~~k~dli~clN 177 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK--------NYNVLTE-IEWLQ---TDVKLDLILCLN 177 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc--------CCceeee-hhhhh---cCceeehHHHHH
Confidence 347999999999999999988765 899999999998877653 2222111 11111 234699999999
Q ss_pred ccccCCChHHHHHHHHhcccC-CcEEEEEEeccCCCCcch-----hhHH--HHHhhhccCCCCC--HHHHHHHHHHCCCe
Q 020307 241 ALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRYTSSTSL-----TGRV--LRERILQNYNYLT--EEEIEDLCTSCGLT 310 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~--~~~l~~ll~~~Gf~ 310 (328)
+|..--+|-++|+.+..+|+| +|++++.-..+....... ..++ +.... -+.|. ...+.++++.+||.
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~---Gr~~ee~v~~~~e~lr~~g~~ 254 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENN---GRSFEEEVARFMELLRNCGYR 254 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhc---CccHHHHHHHHHHHHHhcCch
Confidence 999889999999999999999 898877554433211110 0111 11111 01111 23578899999997
Q ss_pred EEE
Q 020307 311 NYT 313 (328)
Q Consensus 311 ~v~ 313 (328)
+..
T Consensus 255 vea 257 (288)
T KOG3987|consen 255 VEA 257 (288)
T ss_pred hhh
Confidence 654
No 196
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.56 E-value=1.6e-06 Score=80.29 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=70.0
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC----------C--
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----------S-- 230 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----------~-- 230 (328)
.+|||++||+|.++..+++... +|+|+|+++.+++.|++++...+ ..++.++.+|+.++--. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 273 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEEFTQAMNGVREFRRLKGI 273 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHHHHHHHhhcccccccccc
Confidence 4799999999999999998864 89999999999999999998776 45799999998653110 1
Q ss_pred ----CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 231 ----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 231 ----~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..||+|++.=- .-.-...+++.+. +|+++++++.
T Consensus 274 ~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 274 DLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred ccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence 13798886211 0000124445444 4788888866
No 197
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.55 E-value=3.1e-07 Score=77.78 Aligned_cols=100 Identities=21% Similarity=0.328 Sum_probs=75.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+-||-|.|+..+++.+....|+++|+++..++.++++++.+++ ...+..+.+|...+.. .+.+|-|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv--~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV--ENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC--CCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 468899999999999999999965566899999999999999999998876 5678999999987754 7889999875
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~ 266 (328)
.- +.-..+|..+.+++|+||++-
T Consensus 177 lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence 42 233467899999999998763
No 198
>PRK00536 speE spermidine synthase; Provisional
Probab=98.55 E-value=7.4e-07 Score=78.47 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=79.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+..+..++||-||.|.|..++.+.+.-. +|+-+|+++++++.+++.+.... ....+++.++.. +.+ ...++||+
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDV 142 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDL 142 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCE
Confidence 3445678999999999999999999843 99999999999999999665411 112677887762 221 12368999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+.... .+..+.+.+.+.|+|||+++...
T Consensus 143 IIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 143 IICLQE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEcCC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 998743 45677899999999999999865
No 199
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.54 E-value=1.7e-06 Score=69.62 Aligned_cols=103 Identities=29% Similarity=0.451 Sum_probs=76.3
Q ss_pred EEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCC-eEEEEecCCC--CCCCC-CccceEEec
Q 020307 165 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCR--LPFAS-GFVDAVHAG 239 (328)
Q Consensus 165 vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~-i~~~~~d~~~--lp~~~-~~fD~i~~~ 239 (328)
++|+|||+|... .+...... ..++|+|+++.++..++..... . ... +.+...|... +++.. ..||++ ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999976 34443322 3789999999999885554322 1 112 6788888776 77776 489999 55
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
....|..++...+.++.+.++|+|.+++......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 5554444488999999999999999999887654
No 200
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.53 E-value=1e-06 Score=77.12 Aligned_cols=144 Identities=21% Similarity=0.198 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCcC--HHHHHHHH-hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCC--eEEEEecCCCCC--CC----
Q 020307 161 QGGLLVDVSCGSG--LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCRLP--FA---- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~--i~~~~~d~~~lp--~~---- 229 (328)
.-...||||||-= .+..+.++ ..|..+|+-+|.++-.+..++..+.. .++ ..++.+|+.+.. +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-----~~~g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-----NPRGRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-HHHHHCSHHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-----CCCccEEEEeCCCCCHHHHhcCHHH
Confidence 3468999999942 24444444 47888999999999999999988876 445 889999987632 11
Q ss_pred CCccc-----eEEeccccccCCC---hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhH---HHHHhhhccCCCCCHH
Q 020307 230 SGFVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR---VLRERILQNYNYLTEE 298 (328)
Q Consensus 230 ~~~fD-----~i~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 298 (328)
.+-+| .+++..+|||++| |..+++.+...|.||.+|+++...... .+...+ .+...........|.+
T Consensus 143 ~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~--~p~~~~~~~~~~~~~~~~~~~Rs~~ 220 (267)
T PF04672_consen 143 RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG--APERAEALEAVYAQAGSPGRPRSRE 220 (267)
T ss_dssp HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT--SHHHHHHHHHHHHHCCS----B-HH
T ss_pred HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC--CHHHHHHHHHHHHcCCCCceecCHH
Confidence 12233 6778899999964 789999999999999999999987642 222112 2222334566778899
Q ss_pred HHHHHHHHCCCeEEE
Q 020307 299 EIEDLCTSCGLTNYT 313 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~ 313 (328)
++.++|. ||+.++
T Consensus 221 ei~~~f~--g~elve 233 (267)
T PF04672_consen 221 EIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHCCT--TSEE-T
T ss_pred HHHHHcC--CCccCC
Confidence 9999988 888765
No 201
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.53 E-value=1.2e-06 Score=83.56 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=87.5
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccce
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 235 (328)
...++.+|||+++|.|.=+.+++... ....+++.|+++..++..+++++..| ..++.+...|...++ ...+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhhhchhhcCe
Confidence 45688999999999999888888863 34589999999999999999999877 567888888887653 22457999
Q ss_pred EEe----c--cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 236 VHA----G--AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 236 i~~----~--~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|++ + +++..-++. ..+|..+.+.|||||+|+.+|-...
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 994 3 223322211 3678999999999999999886544
No 202
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.52 E-value=7.6e-07 Score=77.00 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=78.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE-EEEecCCCCC-----CCCCcc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-----FASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-----~~~~~f 233 (328)
.++.++||+|||+|.++..+++.+ ..+|+|+|++++++....+ . .+++. +...++..+. ..-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~---~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLR---Q-----DERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHh---c-----CCCeeEeecCCcccCCHhHcCCCceee
Confidence 367799999999999999999985 3589999999988765222 1 33332 3333443222 122356
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE-eccCCCCcchhhHHHHHh---h-hccCCCCCHHHHHHHHHHCC
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT-FLRYTSSTSLTGRVLRER---I-LQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~-~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~ll~~~G 308 (328)
|+++.+.. ..+..+.+.|+| |.+++.. |... . ++..... . ....+..-.+++...+.+.|
T Consensus 145 DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~KPqFE-----~-~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~ 209 (228)
T TIGR00478 145 DVSFISLI--------SILPELDLLLNP-NDLTLLFKPQFE-----A-GREKKNKKGVVRDKEAIALALHKVIDKGESPD 209 (228)
T ss_pred eEEEeehH--------hHHHHHHHHhCc-CeEEEEcChHhh-----h-cHhhcCcCCeecCHHHHHHHHHHHHHHHHcCC
Confidence 76665543 248889999999 7665543 2211 0 1100000 0 01112223456777888899
Q ss_pred CeEEEE
Q 020307 309 LTNYTS 314 (328)
Q Consensus 309 f~~v~~ 314 (328)
|++...
T Consensus 210 ~~~~~~ 215 (228)
T TIGR00478 210 FQEKKI 215 (228)
T ss_pred CeEeeE
Confidence 987764
No 203
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.49 E-value=7.8e-07 Score=78.94 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=79.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
-.++.|||+|||+|.++...+..| -.+|+++|.| +|.+.|++.++.+++ ..+|.++.+-++++.++ ++.|+|++-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~--~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNL--ADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCc--cceEEEccCccccccCc-hhccEEEec
Confidence 357899999999999999999987 4589999975 589999999888776 78999999999988775 479999974
Q ss_pred cccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-.=.-+-+. ....-..++.|||.|..+=+.
T Consensus 251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 251 PMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred cchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 221111111 122334569999999876443
No 204
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.46 E-value=5.4e-06 Score=70.61 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=86.6
Q ss_pred EEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCc-cceEEecccc
Q 020307 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGF-VDAVHAGAAL 242 (328)
Q Consensus 165 vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~-fD~i~~~~vl 242 (328)
|.||||-.|++...|.+.+.-..++++|+++..++.|++.+...++ ..++.+..+|- ..++ .+. .|.|+..++=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~--~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLK--PGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG----GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccC--CCCCCCEEEEecCC
Confidence 6899999999999999998777899999999999999999999886 67899999994 4443 333 7888876652
Q ss_pred ccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 243 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 243 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
-. -...+|.+....++....|++.... ....++++|.+.||.+++.
T Consensus 77 G~--lI~~ILe~~~~~~~~~~~lILqP~~------------------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 77 GE--LIIEILEAGPEKLSSAKRLILQPNT------------------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp HH--HHHHHHHHTGGGGTT--EEEEEESS-------------------------HHHHHHHHHHTTEEEEEE
T ss_pred HH--HHHHHHHhhHHHhccCCeEEEeCCC------------------------ChHHHHHHHHHCCCEEEEe
Confidence 11 1245666666667666667765532 3468999999999998875
No 205
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=6.8e-08 Score=76.28 Aligned_cols=59 Identities=25% Similarity=0.205 Sum_probs=49.1
Q ss_pred CeEEEEecCCCCCCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 215 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 215 ~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+++++-.....+|.+++.|+|.+.+|+||+.-. ..++++.+|.|||||+|-+..|...
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 4555554456678999999999999999999744 4789999999999999999998764
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.43 E-value=8.1e-07 Score=78.09 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=82.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEecCCCC-CCCCC-ccce
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASG-FVDA 235 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~-~fD~ 235 (328)
.++.++||-||.|.|..++.+.+..+..+++.+|+++.+++.|++.+..... ...+++.++.+|.... .-..+ +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 3467899999999999999999886567999999999999999998764211 1257999999997442 11233 8999
Q ss_pred EEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+....-...+.+ ..+++.+.+.|+|||++++...
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 9975432222222 5789999999999999999773
No 207
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=3.3e-07 Score=71.72 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=64.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
-.|+.++|+|||.|-+.....-.. ...|+|+|+++++++.+.+++.+. ..+++++++|+..+.+..+.||.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccCCeEeeEEec
Confidence 468899999999999885555443 457999999999999999998876 347799999999888888999999986
Q ss_pred cc
Q 020307 240 AA 241 (328)
Q Consensus 240 ~v 241 (328)
--
T Consensus 122 pp 123 (185)
T KOG3420|consen 122 PP 123 (185)
T ss_pred CC
Confidence 44
No 208
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.40 E-value=2e-06 Score=79.80 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=86.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~ 235 (328)
..|++|||+=|=||.++.+++..|. .+|++||.|...++.|+++++.+++. ..++.|+++|+.+. .-...+||+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~-~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLD-GDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCC-ccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3589999999999999999998763 48999999999999999999988752 45689999998543 123458999
Q ss_pred EEecc---------ccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~---------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|++.= ...-..+-..++..+.++|+|||.+++++...
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99731 00111123467889999999999999988543
No 209
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.37 E-value=5e-06 Score=75.50 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=76.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE--EEecCCC----CCC-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCR----LPF- 228 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~--~~~d~~~----lp~- 228 (328)
.++..|+|+|||+|.=+..|.+. +....++++|+|.++++.+.+++.... .+.+.+ +++|+.+ ++-
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~---~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN---FSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc---CCCeEEEEEEecHHHHHhhcccc
Confidence 35668999999999865554443 334579999999999999999988322 455555 7888754 221
Q ss_pred -CCCccceEEec-cccccCCChH--HHHHHHHh-cccCCcEEEEEE
Q 020307 229 -ASGFVDAVHAG-AALHCWPSPS--NAVAEISR-ILRSGGVFVGTT 269 (328)
Q Consensus 229 -~~~~fD~i~~~-~vl~h~~d~~--~~l~~~~r-~LkpgG~l~i~~ 269 (328)
......+++.. .+|.+++..+ .+|+++.+ .|+|||.+++..
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 12335666655 4788886554 78999999 999999887744
No 210
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.35 E-value=2.6e-06 Score=76.17 Aligned_cols=107 Identities=20% Similarity=0.118 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~i~~ 238 (328)
...+|||+|+|.|..+..+.+..+ ..+++.+|.|+.+++.++..+..... .....+..... ...++. ..|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchhhhhhhcccccCC--CCcEEEE
Confidence 456999999999998877776533 34799999999999999987664321 11111111111 112222 3399999
Q ss_pred ccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 239 GAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 239 ~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.++|..+++. ..+++.+.+.+.+ .|+++++...
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 9999999872 2445555554544 8999998654
No 211
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.35 E-value=3.9e-05 Score=65.07 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=95.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 232 (328)
+...++.+||-+|.++|....++++. ++.+.|+++|+|+...+..-...+. .+|+--+..|+.... .--+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhccccc
Confidence 45678999999999999999999987 6678999999999766555544444 679999999996532 11247
Q ss_pred cceEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEEeccC--CCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 233 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRY--TSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
+|+|++.-. -++. .-++.++...||+||.++++--... ....+ ...+ .+-.+.|++.||
T Consensus 144 VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p--~~vf-------------~~e~~~L~~~~~ 205 (229)
T PF01269_consen 144 VDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP--EEVF-------------AEEVKKLKEEGF 205 (229)
T ss_dssp EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH--HHHH-------------HHHHHHHHCTTC
T ss_pred ccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH--HHHH-------------HHHHHHHHHcCC
Confidence 899987543 1233 3457777789999999998764321 10011 0111 123456788999
Q ss_pred eEEEEEEeCcE----EEEEEe
Q 020307 310 TNYTSKVQQSF----IMFAAQ 326 (328)
Q Consensus 310 ~~v~~~~~~~~----~~~~a~ 326 (328)
++.+...-.+| .+++++
T Consensus 206 ~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 206 KPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEEEEEE-TTTSTTEEEEEEE
T ss_pred ChheEeccCCCCCCcEEEEEE
Confidence 99998776666 555554
No 212
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=2.2e-06 Score=74.98 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=64.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCC-ccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG-FVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~-~fD~ 235 (328)
....++..|||||+|.|.++..|.+.+. .|+++|+++.+++..+++... ..++.++.+|+...++++- .++.
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcCcchhhcCCCE
Confidence 4455688999999999999999999987 899999999999999998763 5789999999988887643 5677
Q ss_pred EEec
Q 020307 236 VHAG 239 (328)
Q Consensus 236 i~~~ 239 (328)
|+++
T Consensus 99 vVaN 102 (259)
T COG0030 99 VVAN 102 (259)
T ss_pred EEEc
Confidence 7765
No 213
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.31 E-value=3.5e-06 Score=75.21 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=78.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C--CCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~i 236 (328)
.++++|||+=|=+|.++..++..| -.+|+.+|.|..+++.+++++..+++. ..++.++..|+.+. . -..++||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 357899999999999999888766 347999999999999999999987752 36789999998542 1 135689999
Q ss_pred Eecc---c---cccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGA---A---LHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~---v---l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++.= . ..-..+-..+++.+.++|+|||.+++++..
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9841 0 000012346788899999999998877643
No 214
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=8.1e-06 Score=77.20 Aligned_cols=101 Identities=19% Similarity=0.323 Sum_probs=81.4
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SG 231 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~ 231 (328)
+++...++.++||+=||.|.|+..+++... +|+|+|+++++++.|+++++.++ ..|+.|..++++++... ..
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHHhhhccccC
Confidence 455666788999999999999999998765 99999999999999999999887 56799999999876533 24
Q ss_pred ccceEEeccccccCCCh------HHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|.|+. || ..+++.+.+ ++|..+++++.
T Consensus 362 ~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 362 KPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 7899996 44 245555554 67777888866
No 215
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=5.6e-06 Score=70.17 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=86.3
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-----C
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----F 228 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----~ 228 (328)
+++....++.||||.=+|+.+...+...| +++|+++|++++..+.+....+.++. ...++++++++.+ ++ .
T Consensus 68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv--~~KI~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV--DHKITFIEGPALESLDELLADG 145 (237)
T ss_pred HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc--cceeeeeecchhhhHHHHHhcC
Confidence 34556788999999999988877777643 57999999999999999988888886 7889999998743 22 3
Q ss_pred CCCccceEEeccccccCCC-hHHHHHHHHhcccCCcEEEEEE
Q 020307 229 ASGFVDAVHAGAALHCWPS-PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d-~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..++||+++. .|..+ -...+.++.+++|+||++++-.
T Consensus 146 ~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 4689999995 44432 2477899999999999999855
No 216
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.30 E-value=2.1e-06 Score=77.02 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=70.2
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCC-
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASG- 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~- 231 (328)
.+...++..+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. ..++.++.+|+.++. .+++
T Consensus 14 ~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 14 ALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred hhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHHHHHcCC
Confidence 35556788999999999999999999864 57999999999999999988654 247999999997654 1222
Q ss_pred -ccceEEecccc--ccCCChHH
Q 020307 232 -FVDAVHAGAAL--HCWPSPSN 250 (328)
Q Consensus 232 -~fD~i~~~~vl--~h~~d~~~ 250 (328)
++|.|++...+ +++.++.+
T Consensus 89 ~~vDgIl~DLGvSs~Qld~~~R 110 (296)
T PRK00050 89 GKVDGILLDLGVSSPQLDDAER 110 (296)
T ss_pred CccCEEEECCCccccccCCCcC
Confidence 79999986543 44555543
No 217
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.27 E-value=1.8e-05 Score=72.09 Aligned_cols=128 Identities=20% Similarity=0.280 Sum_probs=101.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+|.+|||.=+|.|.|+..+++.+.. .|+++|+++.+++..+++++.+++ ...+..+++|....+...+.+|-|++.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v--~~~v~~i~gD~rev~~~~~~aDrIim~ 263 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV--EGRVEPILGDAREVAPELGVADRIIMG 263 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc--cceeeEEeccHHHhhhccccCCEEEeC
Confidence 35899999999999999999999853 399999999999999999998775 455899999998877555889999986
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
.. .+...++..+.+.+++||++...+....... .......+.......|.+
T Consensus 264 ~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~----------------~~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 264 LP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDI----------------EERPEKRIKSAARKGGYK 314 (341)
T ss_pred CC----CcchhhHHHHHHHhhcCcEEEEEeccchhhc----------------ccchHHHHHHHHhhccCc
Confidence 53 4556789999999999999988776554211 112345677777777753
No 218
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=1.4e-05 Score=65.82 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=94.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHH----HH--HHHHhcCcCCCCCeEEEEecCCCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQ----CY--DFIKQDNTILTSNLALVRADVCRLP 227 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~----a~--~~~~~~~~~~~~~i~~~~~d~~~lp 227 (328)
.+...+++.+|+|+=.|.|+|++.++.. ++...|+++-+.+...-. .+ ....+.. ..|...+-.++..++
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---~aN~e~~~~~~~A~~ 118 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---YANVEVIGKPLVALG 118 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---hhhhhhhCCcccccC
Confidence 3456788999999999999999999987 666678887665431111 11 1111111 334455555555554
Q ss_pred CCCCccceEEeccccc-------cCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHH
Q 020307 228 FASGFVDAVHAGAALH-------CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 300 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~-------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (328)
+.+..|++.....-| |-....++.+++++.|||||++++.++......... .....++.+...+
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~--------dt~~~~ri~~a~V 189 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS--------DTITLHRIDPAVV 189 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh--------hhhhhcccChHHH
Confidence 344566666432211 112235889999999999999999997654321111 1134567889999
Q ss_pred HHHHHHCCCeEEEE
Q 020307 301 EDLCTSCGLTNYTS 314 (328)
Q Consensus 301 ~~ll~~~Gf~~v~~ 314 (328)
++..+.+||+...+
T Consensus 190 ~a~veaaGFkl~ae 203 (238)
T COG4798 190 IAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHhhcceeeee
Confidence 99999999987653
No 219
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.24 E-value=1.9e-06 Score=70.24 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=55.1
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCc-cceEEec
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG 239 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~-fD~i~~~ 239 (328)
.|+|+.||.|..+..+++.+. +|+++|+++..++.|+.++...|. ..++.++++|+.++. +.... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999977 999999999999999999998775 678999999986542 22222 8999975
No 220
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.6e-05 Score=71.38 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=94.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FA 229 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~ 229 (328)
..+...++.+|||+.++.|.=+.+++....+ ..|+++|+++.-++..+.+++..| ..++..+..|...++ ..
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccccccccccc
Confidence 3477889999999999999988888887543 457999999999999999999987 556788888876554 22
Q ss_pred CCccceEEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH
Q 020307 230 SGFVDAVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL 284 (328)
Q Consensus 230 ~~~fD~i~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 284 (328)
.++||.|++. +++.--|+. ..+|..+.++|||||+|+.+|-+.....+......+
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~ 303 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERF 303 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHH
Confidence 2359999963 444322321 368999999999999999999766544444333333
No 221
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.22 E-value=1.1e-05 Score=73.64 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=77.7
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-------CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 227 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 227 (328)
.++...++.+|+|..||+|.++..+.+. ....+++|+|+++.++..|+-++.-.+.. .....+..+|....+
T Consensus 40 ~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 40 KLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-NSNINIIQGDSLEND 118 (311)
T ss_dssp HHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-CBGCEEEES-TTTSH
T ss_pred hhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-ccccccccccccccc
Confidence 4455567779999999999999888763 24568999999999999998776544421 233467888875544
Q ss_pred CC--CCccceEEecccc--c-c-----CCC-------------hHHHHHHHHhcccCCcEEEEEEec
Q 020307 228 FA--SGFVDAVHAGAAL--H-C-----WPS-------------PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 ~~--~~~fD~i~~~~vl--~-h-----~~d-------------~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.. ...||+|+++--+ . + ..+ ...++..+.+.|++||++.+..|.
T Consensus 119 ~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 119 KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 32 4789999986221 1 0 001 025789999999999999888875
No 222
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.22 E-value=1.3e-05 Score=71.04 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=67.1
Q ss_pred CCeEEEEcCCcCHH-HHHHHHh-CCCceEEEEeCCHHHHHHHHHHHH-hcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 162 GGLLVDVSCGSGLF-SRKFAKS-GTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 162 ~~~vLDiGcG~G~~-~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
+.+|+=||||.=-+ +..+++. +++..++++|++++.++.+++... ..++ ..++.|+.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L--~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL--SKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc--cCCeEEEecchhccccccccCCEEEE
Confidence 35999999997544 4445543 556689999999999999998777 3344 67899999999777654568999997
Q ss_pred ccccccC-CChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCW-PSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....-- .+..++|..+.+.++||..+++-.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 7654422 256799999999999999999875
No 223
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.20 E-value=7.9e-06 Score=70.80 Aligned_cols=77 Identities=16% Similarity=0.286 Sum_probs=64.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...+++..|||+|.|||.++..+.+.+. +|+++|+++.|+....++...-.. .....++.+|+...+++ .||.+
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~--~~kLqV~~gD~lK~d~P--~fd~c 127 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPK--SGKLQVLHGDFLKTDLP--RFDGC 127 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCc--cceeeEEecccccCCCc--cccee
Confidence 3456788999999999999999999987 999999999999999988765321 35789999999877644 78999
Q ss_pred Eec
Q 020307 237 HAG 239 (328)
Q Consensus 237 ~~~ 239 (328)
+++
T Consensus 128 VsN 130 (315)
T KOG0820|consen 128 VSN 130 (315)
T ss_pred ecc
Confidence 884
No 224
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.18 E-value=4.9e-06 Score=69.72 Aligned_cols=109 Identities=12% Similarity=0.194 Sum_probs=78.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC---CCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp---~~~~~fD~ 235 (328)
..+.++||+=||+|.++.....+|. .+|+.+|.++..++..+++++..+. ..++.++..|... ++ ....+||+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC--CcceeeeccCHHHHHHhhcccCCCceE
Confidence 3688999999999999999999983 5899999999999999999988664 3468888888532 22 24678999
Q ss_pred EEeccccccCCC-hHHHHHHHH--hcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCWPS-PSNAVAEIS--RILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~~d-~~~~l~~~~--r~LkpgG~l~i~~~~~ 272 (328)
|++.=-... .. ...++..+. .+|+++|.+++.....
T Consensus 118 IflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 118 IFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 998532211 12 255677776 7899999999987554
No 225
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.16 E-value=2.7e-06 Score=71.25 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CC--
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~-- 229 (328)
++.++||+||++|.|+..+.+++ +...|+|+|+.+.. . ..++.++++|+.+.. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-----~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-----LQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S------TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-----ccceeeeecccchhhHHHhhhhhcccc
Confidence 56899999999999999999987 45699999998750 0 345666666653311 11
Q ss_pred CCccceEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.+.+|+|++..+.....++ ...+.-+...|+|||.+++..+.
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 2689999998854333322 23455666789999999998755
No 226
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=1.5e-05 Score=67.96 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=96.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCc-cceEEecc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF-VDAVHAGA 240 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~-fD~i~~~~ 240 (328)
+.+++|||+|.|.=+.-++-..|+.+++-+|....-+...+....+-+ ..|+.++.+.++++.- +.. ||+|++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---L~nv~i~~~RaE~~~~-~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---LENVEIVHGRAEEFGQ-EKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---CCCeEEehhhHhhccc-ccccCcEEEeeh
Confidence 579999999999999888877788899999999998888888877776 6789999999988763 223 99999987
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+ .+...++.-...++|+||.++..-... ..+ -..+.+......|+.+.+..
T Consensus 144 v----a~L~~l~e~~~pllk~~g~~~~~k~~~-----------~~~---------e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 144 V----ASLNVLLELCLPLLKVGGGFLAYKGLA-----------GKD---------ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred c----cchHHHHHHHHHhcccCCcchhhhHHh-----------hhh---------hHHHHHHHHHhhcCcEEEEE
Confidence 6 345666777788999999876533111 111 12466778888888877753
No 227
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.13 E-value=5.5e-06 Score=70.56 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=67.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCcCCCCCeEEEEecCCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
++..++...+|+|||.|......+......+.+|+|+.+...+.|...... .+. ...++.+..+|+.+.++.
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCccccHhH
Confidence 455678899999999999988777665445699999999988887654321 221 145678888998764421
Q ss_pred C---CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 S---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~---~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
. ...|+|++++... -++....|.++..-||+|.+++.+.+
T Consensus 117 ~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp HHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred hhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 1 3469999987643 12334667888888999988776443
No 228
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.8e-05 Score=66.67 Aligned_cols=100 Identities=24% Similarity=0.283 Sum_probs=73.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~ 230 (328)
.++.+|+|+|+..|.++..+++. ++...|+|+|+.+--. .+++.++++|+...+ +..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~--------------~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------------IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc--------------CCCceEEeeeccCccHHHHHHHHcCC
Confidence 46889999999999999999887 4444699999976321 568999999997644 334
Q ss_pred CccceEEecccc--------ccCCCh---HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 231 GFVDAVHAGAAL--------HCWPSP---SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 231 ~~fD~i~~~~vl--------~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
..+|+|++...= +|.... ..++.-+..+|+|||.+++-.+...
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 557999975432 222111 2456777789999999999886543
No 229
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.10 E-value=7.3e-05 Score=67.44 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH--Hh--cCcCCCCCeEEEEecCCCCC-CCCCccce
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI--KQ--DNTILTSNLALVRADVCRLP-FASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~--~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 235 (328)
...++|-+|.|.|..++++.+.-...+++-+|.+|.|++.+++.. .. .+....++++++..|+.++- -..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 456899999999999999998744679999999999999998443 22 12223678999999986542 23458999
Q ss_pred EEeccccccCCCh----------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 236 VHAGAALHCWPSP----------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 236 i~~~~vl~h~~d~----------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
|+.. ++|| ..+..-+.|.|+++|.+++..-..+..-. .| ..+..-++
T Consensus 369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~---------------vf---w~i~aTik 425 (508)
T COG4262 369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR---------------VF---WRIDATIK 425 (508)
T ss_pred EEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc---------------ee---eeehhHHH
Confidence 9864 3555 36778899999999999997644331100 11 13456788
Q ss_pred HCCCeEEEEE----EeCcEEEEEEe
Q 020307 306 SCGLTNYTSK----VQQSFIMFAAQ 326 (328)
Q Consensus 306 ~~Gf~~v~~~----~~~~~~~~~a~ 326 (328)
++||.+.-.+ +.+.|-++++.
T Consensus 426 ~AG~~~~Pyhv~VPTFGeWGf~l~~ 450 (508)
T COG4262 426 SAGYRVWPYHVHVPTFGEWGFILAA 450 (508)
T ss_pred hCcceeeeeEEecCcccccceeecc
Confidence 8998765532 24555444444
No 230
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.08 E-value=3e-05 Score=78.31 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC------------------------------------------CCceEEEEeCCHHHH
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG------------------------------------------TYSGVVALDFSENML 198 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------~~~~v~g~D~s~~~~ 198 (328)
++..++|..||+|.++...+... ....++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46799999999999998876531 012689999999999
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEecCCCCCCC--CCccceEEecccc-ccCCC---hHHHHHHHHhcc---cCCcEEEEEE
Q 020307 199 RQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAAL-HCWPS---PSNAVAEISRIL---RSGGVFVGTT 269 (328)
Q Consensus 199 ~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~i~~~~vl-~h~~d---~~~~l~~~~r~L---kpgG~l~i~~ 269 (328)
+.|+.++...++ ...+.+.++|+.+++.+ .++||+|+++-=. +.+.+ ...+.+++.+.+ .+|+.+++.+
T Consensus 270 ~~A~~N~~~~g~--~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 270 QAARKNARRAGV--AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHcCC--CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 999999998875 55789999999887643 3579999997321 12222 223334444444 4899888877
Q ss_pred ecc
Q 020307 270 FLR 272 (328)
Q Consensus 270 ~~~ 272 (328)
...
T Consensus 348 ~~~ 350 (702)
T PRK11783 348 SSP 350 (702)
T ss_pred CCH
Confidence 644
No 231
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=4.1e-05 Score=67.68 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH---HhcC--------------------c-------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDN--------------------T------- 210 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~--------------------~------- 210 (328)
...+||--|||.|+++..|+..|+ .+-|=|+|--|+-.-.=.+ +..+ +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 456899999999999999999988 7777787766653322111 0000 0
Q ss_pred -------CCCCCeEEEEecCCCCC---CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchh
Q 020307 211 -------ILTSNLALVRADVCRLP---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 280 (328)
Q Consensus 211 -------~~~~~i~~~~~d~~~lp---~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~ 280 (328)
.+........||+.+.- -..++||+|+..+-|.--.+....+..+..+|||||+++=..|..+......
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~- 306 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH- 306 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC-
Confidence 00122233445654321 1234799999888887777888999999999999999988777654221111
Q ss_pred hHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 281 GRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
...+...--++.+++..+.+..||++++..
T Consensus 307 -----g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 307 -----GVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred -----CCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 001133456889999999999999988854
No 232
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.06 E-value=2.8e-05 Score=72.36 Aligned_cols=101 Identities=13% Similarity=0.184 Sum_probs=81.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~~ 239 (328)
+.+|||+-||+|..+..++...+ -.+|+++|+++..++.++++++..+ ..++.+++.|+..+- .....||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999998732 2489999999999999999998765 346889999986542 123579999975
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
- +..|..++..+.+.+++||.++++-
T Consensus 122 P----fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P----FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C----CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 4 2466789999999999999999974
No 233
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.01 E-value=3.9e-05 Score=69.44 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=69.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.++||+||++|.++..+.+++. +|++||..+ +...... .+++.....|......+.+.+|.++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~~---------~~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLMD---------TGQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhhC---------CCCEEEEeccCcccCCCCCCCCEEEE
Confidence 35789999999999999999999976 999999654 2222221 67899999887654323678999999
Q ss_pred ccccccCCChHHHHHHHHhcccCC
Q 020307 239 GAALHCWPSPSNAVAEISRILRSG 262 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~Lkpg 262 (328)
..+ ..|.++++-+.+.|..|
T Consensus 277 Dmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc----cCHHHHHHHHHHHHhcC
Confidence 765 46899999999999776
No 234
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.99 E-value=5.5e-05 Score=69.43 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=82.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC--------------------------------c-------eEEEEeCCHHHHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------S-------GVVALDFSENMLRQ 200 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~v~g~D~s~~~~~~ 200 (328)
.++..++|-=||+|.++...+..+++ . .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 45578999999999999998877641 1 27799999999999
Q ss_pred HHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc-ccCCCh---H----HHHHHHHhcccCCcEEEEEEe
Q 020307 201 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPSP---S----NAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 201 a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl-~h~~d~---~----~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+.++...|+ ...|.|.++|+..++-+-+.+|+|+++--- +-+.+. . .+.+.+.+.++..+++++++.
T Consensus 270 Ak~NA~~AGv--~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 270 AKANARAAGV--GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHhcCC--CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 9999999987 788999999999887443789999997221 222222 1 344566667777777777663
No 235
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.99 E-value=2.6e-05 Score=64.72 Aligned_cols=108 Identities=19% Similarity=0.343 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc----CCCCCeEEEEecCCC-CCCCCCccce
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
+.-.+.|||||.|.++..|+..+|+.-++|+||-....++.++++..... ....++.+...+... +| +-|..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~k 136 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEK 136 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhh
Confidence 34579999999999999999999999999999999999999988865321 013455565555432 23 22222
Q ss_pred EEeccccccCCChH-------------HHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl~h~~d~~-------------~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
-.++-.+..++||. ..+.+..-+|++||.++..+-.
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 22333334456662 4688889999999999987743
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.00078 Score=56.16 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=100.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCcc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f 233 (328)
+...++.+||=+|..+|....+.++.-+...++++|+|+...+..-...+. .+|+--+.+|+.... .--+..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhcccc
Confidence 456789999999999999999999986577899999999988777666655 678888889986532 112458
Q ss_pred ceEEeccccccCCChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 234 DAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
|+|+.. +..|. -+..++...||+||.++++--.+.-....--...+ .+-.+-|+..||+
T Consensus 147 Dviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf-------------~~ev~kL~~~~f~ 208 (231)
T COG1889 147 DVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVF-------------KDEVEKLEEGGFE 208 (231)
T ss_pred cEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHH-------------HHHHHHHHhcCce
Confidence 888753 33443 45678889999999777755332100000000111 1233567888999
Q ss_pred EEEEEEeCcE----EEEEEe
Q 020307 311 NYTSKVQQSF----IMFAAQ 326 (328)
Q Consensus 311 ~v~~~~~~~~----~~~~a~ 326 (328)
+.+...-.+| .+++++
T Consensus 209 i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 209 ILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeEEeccCCcccceEEEEEe
Confidence 9998776666 555554
No 237
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.95 E-value=5.2e-05 Score=74.24 Aligned_cols=76 Identities=12% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----C
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p 227 (328)
...+|||.+||+|.++..+++..+ ..+++|+|+++..+..++.++...+ ...+.+...|.... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~---~~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA---LLEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC---CCCceeeecccccccccccc
Confidence 356999999999999988877542 2578999999999999998876643 22345555553221 1
Q ss_pred CCCCccceEEec
Q 020307 228 FASGFVDAVHAG 239 (328)
Q Consensus 228 ~~~~~fD~i~~~ 239 (328)
-..+.||+|+.+
T Consensus 108 ~~~~~fD~IIgN 119 (524)
T TIGR02987 108 SYLDLFDIVITN 119 (524)
T ss_pred cccCcccEEEeC
Confidence 112579999986
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.95 E-value=8.8e-05 Score=59.51 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=73.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHH-----hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.+...|+|+|||.|+++..|+. . ++.+|+|+|.++..++.+.++.+..+.....+..+..++....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4677999999999999999998 4 57799999999999999998887654211345666666654432 145667
Q ss_pred eEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 235 AVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 235 ~i~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+++..+.-- +. ..+|+...+ ++-.+++..|.-+
T Consensus 102 ~~vgLHaCG---~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 102 ILVGLHACG---DLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred EEEEeeccc---chHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 777654433 33 244555444 6666676666543
No 239
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.91 E-value=8.2e-05 Score=69.86 Aligned_cols=102 Identities=23% Similarity=0.403 Sum_probs=87.0
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 243 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~ 243 (328)
++|-+|||.-.+...+-+.| ...++-+|+|+-.++....+-... .+-..+...|+..+.|++++||+|+.-+.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 89999999999999999887 458999999999988877664321 5678899999999999999999999999998
Q ss_pred cCCCh----------HHHHHHHHhcccCCcEEEEEEe
Q 020307 244 CWPSP----------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 244 h~~d~----------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++-.+ ...+.++.|+|++||+++..+.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 88422 2457899999999999888776
No 240
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1.1e-05 Score=64.49 Aligned_cols=113 Identities=18% Similarity=0.109 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC--CCCCCCccceEE
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~i~ 237 (328)
.+.+||++|.|. |..+..++...+...|...|-++..++-.++....+-.........+..+... .......||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 467999999995 55666666677788999999999999888776543211001122222222211 112356899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+...+..-..-..+.+.|.++|+|.|..++..|.+.
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 998875444456788999999999999888777654
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.87 E-value=9.3e-05 Score=66.47 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=88.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCcc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~f 233 (328)
+...++.+|||+.++.|.=+..++.... ...+++.|++..-+...+.++...| ..++.....|..... .....|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHHHHTTTE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeecccccccccccccc
Confidence 5667889999999999998888888743 5799999999999999999998877 667888878876541 223469
Q ss_pred ceEEec------cccccCCCh----------------HHHHHHHHhcc----cCCcEEEEEEecc
Q 020307 234 DAVHAG------AALHCWPSP----------------SNAVAEISRIL----RSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~------~vl~h~~d~----------------~~~l~~~~r~L----kpgG~l~i~~~~~ 272 (328)
|.|+.. +++..-++. .++|+.+.+.+ ||||+++.+|-..
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 999963 334443432 36799999999 9999999999543
No 242
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.87 E-value=6.1e-05 Score=67.00 Aligned_cols=95 Identities=14% Similarity=0.279 Sum_probs=69.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC---Ccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS---GFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~f 233 (328)
+...++..|||||+|.|.++..|.+.+. +++++|+++.+.+..++++.. .+++.++.+|+..+.... ...
T Consensus 26 ~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 26 LDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp HTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred cCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhccccHHhhcCCc
Confidence 4455788999999999999999999984 999999999999999987763 679999999998876543 234
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccC
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRS 261 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~Lkp 261 (328)
..|+.+- -+ .-...++..+...-+.
T Consensus 99 ~~vv~Nl--Py-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 99 LLVVGNL--PY-NISSPILRKLLELYRF 123 (262)
T ss_dssp EEEEEEE--TG-TGHHHHHHHHHHHGGG
T ss_pred eEEEEEe--cc-cchHHHHHHHhhcccc
Confidence 4555432 22 1123556666653344
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.86 E-value=6.6e-05 Score=60.12 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=50.4
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 225 (328)
++||+|||.|.++..+++.++..+++++|+++.+.+.++++++..+ ..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence 4899999999999999999887789999999999999999988755 3467887777643
No 244
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.00021 Score=59.33 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=80.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCC--CccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFAS--GFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~--~~fD~i 236 (328)
-.+.++||+=+|+|.++.....+|. ..++.+|.+...+...+++++..+. ..+..++..|+... +-.. +.||+|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~--~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGL--EGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCC--ccceEEEeecHHHHHHhcCCCCcccEE
Confidence 4789999999999999999999973 5899999999999999999887654 56788888888632 1112 259999
Q ss_pred Eeccccc-cCCChHHHHHH--HHhcccCCcEEEEEEec
Q 020307 237 HAGAALH-CWPSPSNAVAE--ISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~-h~~d~~~~l~~--~~r~LkpgG~l~i~~~~ 271 (328)
+..=-.+ -+.++...+.. -...|+|+|.+++....
T Consensus 119 flDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 119 FLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 9854333 11122333333 45779999999997743
No 245
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.85 E-value=0.00082 Score=56.90 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.++.||||-.+++..+|.+.++...+++.|+++..++.|.+++...++ .++++...+|-...=-.++.+|+|+..+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l--~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL--SERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC--cceEEEeccCCccccCccCCcCEEEEeC
Confidence 35569999999999999999999988999999999999999999998886 7888888888733212345799998765
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
+=-- -...+|.+-.+.|+.=-++++... -...+++++|...+|+++.+
T Consensus 94 MGG~--lI~~ILee~~~~l~~~~rlILQPn------------------------~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 94 MGGT--LIREILEEGKEKLKGVERLILQPN------------------------IHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CcHH--HHHHHHHHhhhhhcCcceEEECCC------------------------CCHHHHHHHHHhCCceeeee
Confidence 4110 124566666666664435555331 13468999999999988775
No 246
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.84 E-value=6.5e-05 Score=62.98 Aligned_cols=105 Identities=13% Similarity=0.234 Sum_probs=82.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~ 237 (328)
.++++||.||-|-|.....+.++-| .+=+.+|..++.++..++..-. ...++..+.+--++. .++++.||.|.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeE
Confidence 5789999999999988888887755 3567899999998877764322 256787777765432 25688999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-..--+|..|...+.+.+.|+|||+|++-...
T Consensus 175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 77666888888899999999999999886644
No 247
>PRK11827 hypothetical protein; Provisional
Probab=97.83 E-value=8.7e-06 Score=54.12 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=36.8
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.+.+.||.|++++...... +.+.|..|+..|++++|++.++...
T Consensus 6 LeILaCP~ckg~L~~~~~~---------~~Lic~~~~laYPI~dgIPVlL~de 49 (60)
T PRK11827 6 LEIIACPVCNGKLWYNQEK---------QELICKLDNLAFPLRDGIPVLLETE 49 (60)
T ss_pred HhheECCCCCCcCeEcCCC---------CeEECCccCeeccccCCccccCHHH
Confidence 3689999999999764432 5799999999999999999988763
No 248
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.82 E-value=4.8e-05 Score=70.53 Aligned_cols=65 Identities=25% Similarity=0.488 Sum_probs=50.2
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 225 (328)
+++...++ .|||+=||.|.++..+++... +|+|+|+++++++.|++++..++ ..++.|+.++.++
T Consensus 191 ~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 191 EWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAED 255 (352)
T ss_dssp HHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred HHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccc
Confidence 33454444 899999999999999999876 99999999999999999999877 6789999887654
No 249
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.80 E-value=8.7e-05 Score=61.43 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+++|||+|.|+|..+...++.| -..|+..|+.+......+-+.+.+ ...+.+...|..- .+..||+|+...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~~~~Dl~LagD 150 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SPPAFDLLLAGD 150 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CCcceeEEEeec
Confidence 58899999999999999999887 457999999988888777776664 4577777777754 467899999999
Q ss_pred ccccCCChHHHHHHHHhcccC-CcEEEEEEecc
Q 020307 241 ALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR 272 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~ 272 (328)
++..-+.-.+++. ..+.|+. |-.+++-+|.+
T Consensus 151 lfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 151 LFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 9876555567777 5555554 44555555543
No 250
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.77 E-value=6.4e-05 Score=61.65 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=77.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
.+.+.|+|.|+|-++...+.... +|++++.++...+.|.+++...+ ..++.++.+|+....| ...|+|+|-..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHHh
Confidence 46899999999999988888755 99999999999999999876555 6799999999998887 35799997432
Q ss_pred --cccCCChHHHHHHHHhcccCCcEEEE
Q 020307 242 --LHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 242 --l~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
.--......+++.+...||-++.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11112234677888888888887754
No 251
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=1.5e-05 Score=52.43 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=37.8
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
+++++||.|+++|...... +.+.|+.|+..|++.+|++.++...
T Consensus 6 LeiLaCP~~kg~L~~~~~~---------~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 6 LEILACPVCKGPLVYDEEK---------QELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred heeeeccCcCCcceEeccC---------CEEEecccCceeecccCccccCchh
Confidence 4789999999998765543 5899999999999999999998763
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00085 Score=57.51 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=90.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE-EecCCCCC---CCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP---FASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp---~~~~~fD~ 235 (328)
.++..+||+|+.||.|+..+.++|. ..|+++|..-..+..--+. .+++..+ ..++..+. +. +..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~-~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFT-EKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcc-cCCCe
Confidence 4688999999999999999999973 5899999988766543321 5555444 34555442 32 36789
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh----hccCCCCCHHHHHHHHHHCCCeE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI----LQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+++.-++. ....+|..+..+++|++-++...-- .... ++...... ....+.--...+.++++..||.+
T Consensus 148 ~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKP----QFEa-gr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 148 IVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKP----QFEA-GREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred EEEEeehh---hHHHHHHHHHHhcCCCceEEEEecc----hhhh-hhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 99876654 4578899999999999987775521 1111 11111100 01122223467888999999998
Q ss_pred EEE
Q 020307 312 YTS 314 (328)
Q Consensus 312 v~~ 314 (328)
...
T Consensus 220 ~gl 222 (245)
T COG1189 220 KGL 222 (245)
T ss_pred eee
Confidence 875
No 253
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.58 E-value=1.6e-05 Score=60.30 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=42.5
Q ss_pred EEEcCCcCHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CCCCccceEEecc
Q 020307 166 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FASGFVDAVHAGA 240 (328)
Q Consensus 166 LDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~~fD~i~~~~ 240 (328)
||+|+..|..+..+++.... .+++++|..+. .+..++.++..++ ..++.++.++..+. + +..+++|+|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~--~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL--SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC--CCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999988887765322 26999999985 2233333333332 55799999998542 2 3357899999866
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
. |-.+.....++.+.+.|+|||++++-+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 111234567888999999999988743
No 254
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.55 E-value=6.6e-05 Score=63.15 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~i 236 (328)
....|+|.-||.|..+...+..++ .|+++|+++.-+..|+.+++-.|. ..++.|++||+.++ .+....+|+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD~ld~~~~lq~~K~~~~~v 169 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGV--PDRITFICGDFLDLASKLKADKIKYDCV 169 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecC--CceeEEEechHHHHHHHHhhhhheeeee
Confidence 456899999999999999999988 999999999999999999998887 56999999998654 2334445666
Q ss_pred EeccccccCCChHHHHHHHHhcccCCc
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGG 263 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG 263 (328)
+.+---..-.-...-+-.+...++|.|
T Consensus 170 f~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 170 FLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred ecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 654321111111233444555555553
No 255
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.51 E-value=0.00049 Score=62.00 Aligned_cols=89 Identities=10% Similarity=0.168 Sum_probs=70.0
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS 230 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 230 (328)
.+...+++.++|.-+|.|..+..+.+..+..+|+|+|.++.+++.+++++... ..++.++.+++.++. ...
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHHHHHhcCC
Confidence 45566788999999999999999998865579999999999999999988653 458999999987653 123
Q ss_pred CccceEEecccc--ccCCCh
Q 020307 231 GFVDAVHAGAAL--HCWPSP 248 (328)
Q Consensus 231 ~~fD~i~~~~vl--~h~~d~ 248 (328)
.++|.|++...+ +++.++
T Consensus 91 ~~vDgIl~DLGvSS~Qld~~ 110 (305)
T TIGR00006 91 TKIDGILVDLGVSSPQLDDP 110 (305)
T ss_pred CcccEEEEeccCCHhhcCCC
Confidence 579999986553 444444
No 256
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.00081 Score=55.31 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=68.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCC--------CC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PF 228 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~l--------p~ 228 (328)
..|+.+|||+||..|.++.-..++ +|.+-|.|+|+-.- .. ...+.++++ |+.+. .+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p------~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP------PEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC------CCCcccccccccCCHHHHHHHHHhC
Confidence 357899999999999999988887 58889999998321 11 445666666 65442 13
Q ss_pred CCCccceEEeccccccC----CChH-------HHHHHHHhcccCCcEEEEEEeccC
Q 020307 229 ASGFVDAVHAGAALHCW----PSPS-------NAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~----~d~~-------~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
++...|+|++...=.-. .|.. .+|.-....++|+|.+++-.+...
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 56789999986431111 1111 344555567789999999887643
No 257
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.45 E-value=0.00063 Score=53.89 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=58.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEeccccccCC--------Ch---HHHHH
Q 020307 187 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALHCWP--------SP---SNAVA 253 (328)
Q Consensus 187 ~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~~~vl~h~~--------d~---~~~l~ 253 (328)
+|+|+|+-+++++..++++.+.+. ..++.++..+=+++. .+++++|+++.+.. ++| .+ ..+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~--~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL--EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC--CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 589999999999999999999875 457999987765554 23358999998754 332 23 36788
Q ss_pred HHHhcccCCcEEEEEEecc
Q 020307 254 EISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 254 ~~~r~LkpgG~l~i~~~~~ 272 (328)
.+.++|+|||++.++.+..
T Consensus 77 ~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEEEEEEEEE--S
T ss_pred HHHHhhccCCEEEEEEeCC
Confidence 9999999999999988654
No 258
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.42 E-value=0.00071 Score=63.97 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=85.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCH----HHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE----NMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~----~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD 234 (328)
..-..|+|...|.|.|+.+|.+.. |..+..-+ +.+....+ .|+ .=+..|. +.++.=..+||
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIyd----RGL------IG~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYD----RGL------IGVYHDWCEAFSTYPRTYD 429 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhh----ccc------chhccchhhccCCCCcchh
Confidence 344689999999999999998752 44444332 22222222 111 1111232 33443457999
Q ss_pred eEEeccccccCCC---hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 235 AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 235 ~i~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+|.+.+++.+..+ ...+|-|+.|+|+|||.+++-+... ...+++.++++..++.
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------------vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------------VLEKVKKIAKSLRWEV 486 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------------HHHHHHHHHHhCcceE
Confidence 9999999877753 4688999999999999999966211 1347788888888876
Q ss_pred EEEEEeC----cEEEEEEeC
Q 020307 312 YTSKVQQ----SFIMFAAQK 327 (328)
Q Consensus 312 v~~~~~~----~~~~~~a~k 327 (328)
....... .--+++++|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 6544433 346666665
No 259
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.42 E-value=0.0005 Score=59.57 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=87.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..+|+|||||.=-++.-+....+...|+|+|++..+++.....+... ..+..+...|+..-+ +....|+.++.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~~-~~~~~DlaLll 178 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSDP-PKEPADLALLL 178 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTSH-TTSEESEEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeeccC-CCCCcchhhHH
Confidence 3478999999999888887777777789999999999999999887765 457778888886553 35679999998
Q ss_pred cccccCCChH-HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC
Q 020307 240 AALHCWPSPS-NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ 318 (328)
Q Consensus 240 ~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~ 318 (328)
-+++.+.... ...-++...++- =.++++.|.+. .... .+.+.. .-...+.+++..-|+.+-+ ...+
T Consensus 179 K~lp~le~q~~g~g~~ll~~~~~-~~~vVSfPtrS--L~gR-~~gm~~--------~y~~~fe~~~~~~~~~~~~-~~~~ 245 (251)
T PF07091_consen 179 KTLPCLERQRRGAGLELLDALRS-PHVVVSFPTRS--LGGR-NKGMEQ--------TYSAWFEALAAERGWIVDR-LTFG 245 (251)
T ss_dssp T-HHHHHHHSTTHHHHHHHHSCE-SEEEEEEES----------TTHHH--------CHHHHHHHHCCTTCEEEEE-EEET
T ss_pred HHHHHHHHHhcchHHHHHHHhCC-CeEEEeccccc--cccC-cccccc--------CHHHHHHHhcccCCceeee-eecc
Confidence 8887764332 111222222321 25666666542 1100 000111 1235778888888888444 5554
Q ss_pred cEEE
Q 020307 319 SFIM 322 (328)
Q Consensus 319 ~~~~ 322 (328)
+-++
T Consensus 246 ~Elv 249 (251)
T PF07091_consen 246 NELV 249 (251)
T ss_dssp TEEE
T ss_pred ccee
Confidence 4444
No 260
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.34 E-value=0.002 Score=59.49 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=88.4
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FAS 230 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~ 230 (328)
..+.+.++.+|||..+..|.=+.+++.. .....+++.|.+.+.++..+.++...| ..+......|..++| ++.
T Consensus 235 ~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~ 311 (460)
T KOG1122|consen 235 MALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG 311 (460)
T ss_pred eecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc
Confidence 3456788999999999998765555543 223489999999999999999998887 567777777876665 444
Q ss_pred CccceEEec----c--ccccCCC----------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhH
Q 020307 231 GFVDAVHAG----A--ALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 282 (328)
Q Consensus 231 ~~fD~i~~~----~--vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 282 (328)
+||-|+.. . ++.--+. ..++|-.+..++++||+|+.+|-......+.+...
T Consensus 312 -~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~ 384 (460)
T KOG1122|consen 312 -SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVD 384 (460)
T ss_pred -ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHH
Confidence 89999853 3 3211000 13677888899999999999997665444444333
No 261
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.31 E-value=0.00067 Score=54.45 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHH-HHHHHHhcCcCCCCCeEEEEecCC-CCCCCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-CYDFIKQDNTILTSNLALVRADVC-RLPFASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~-a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~i~~~ 239 (328)
+++.+-+|+..=..=......| ..+++.+|.++--++. .++++ ..+...|+. +..--.++||.+.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~dr~----------ssi~p~df~~~~~~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRDRL----------SSILPVDFAKNWQKYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCccccccc----------ccccHHHHHHHHHHhhccchhhhee
Confidence 5678888887654444444444 4568888876422211 11110 112222321 111124689999999
Q ss_pred cccccCC-----Ch------HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 240 AALHCWP-----SP------SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 240 ~vl~h~~-----d~------~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+++||+. || .+.+.++.++|||||.+++..|...
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 9999983 44 3678899999999999999998765
No 262
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00023 Score=67.19 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=56.6
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 225 (328)
++....+..+||+-||||.++..+++... .|+|++++++.++.|++++..+| ..|..|+++-+++
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAED 442 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecchhh
Confidence 34556678999999999999999999765 99999999999999999998877 6799999995554
No 263
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.25 E-value=0.00073 Score=57.10 Aligned_cols=107 Identities=10% Similarity=0.127 Sum_probs=56.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----C--
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F-- 228 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~-- 228 (328)
..++..|+|+|.-.|..+..++.. +...+|+|+|++...... +.++.+.. .+++++++||..+.. .
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~ 105 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPM--SPRITFIQGDSIDPEIVDQVRE 105 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGS
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccc--cCceEEEECCCCCHHHHHHHHH
Confidence 345679999999999877766542 466799999996543321 11221111 479999999986542 1
Q ss_pred --CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 --~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
......+|+. .+-|...+..+.|+....++++|+++++.+.
T Consensus 106 ~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 106 LASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp S----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred hhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 1122334443 3333335567889999999999999999664
No 264
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.10 E-value=0.00025 Score=49.14 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=30.4
Q ss_pred ccCcccccCCCchhhcc---C----------------CCCccccccccCceeeCCCCccccCccc
Q 020307 57 EGDLFSCPICYEPLIRK---G----------------PTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~---~----------------~~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (328)
..++++||.|+++|... . ....-...+..+.+.|++|++.|++++|
T Consensus 4 llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 4 LLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred HHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 35789999999988100 0 0000012556789999999999999876
No 265
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.07 E-value=0.015 Score=54.14 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=87.2
Q ss_pred CCeEEEEcCCcCHHHHHHHH--------h-------CCCceEEEEeCCHHHHHHHHHHHHhcC---------cC-CCCC-
Q 020307 162 GGLLVDVSCGSGLFSRKFAK--------S-------GTYSGVVALDFSENMLRQCYDFIKQDN---------TI-LTSN- 215 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~-~~~~- 215 (328)
..+|+|+|||+|.++..+.. + .|..+|+.-|.-.+-....-+.+.... +. ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999977654432 1 134577777764332222222211100 00 0001
Q ss_pred --eEEEEecCCCCCCCCCccceEEeccccccCCC-h-------------------------------------HHHHHHH
Q 020307 216 --LALVRADVCRLPFASGFVDAVHAGAALHCWPS-P-------------------------------------SNAVAEI 255 (328)
Q Consensus 216 --i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d-~-------------------------------------~~~l~~~ 255 (328)
+.-+.+.+..--|+.++.+++++++.+|++.. | ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222444333378999999999999988853 1 1244555
Q ss_pred HhcccCCcEEEEEEeccCCCC---c-----ch---hhHHHHH-------------hhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 256 SRILRSGGVFVGTTFLRYTSS---T-----SL---TGRVLRE-------------RILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 256 ~r~LkpgG~l~i~~~~~~~~~---~-----~~---~~~~~~~-------------~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
.+-|.|||+++++...+.+.. . .| +...+.. ...-...+.+.+|+++++++.|--.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 667899999999987764211 0 01 1111111 1114456788999999999998755
Q ss_pred EE
Q 020307 312 YT 313 (328)
Q Consensus 312 v~ 313 (328)
++
T Consensus 304 I~ 305 (386)
T PLN02668 304 ID 305 (386)
T ss_pred ee
Confidence 54
No 266
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.07 E-value=0.0063 Score=55.56 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=68.0
Q ss_pred ccccCCCeEEEEcCC-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec-CCCCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~lp~~~~~fD 234 (328)
....|+.+|+-+|+| .|..+.++++.- ..+|+++|.+++-.+.|++. ..-.++... .....--.+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l---------GAd~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL---------GADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh---------CCcEEEEcCCchhhHHhHhhCc
Confidence 345689999999988 256788888853 25999999999999999874 222333322 211111122499
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|+..-. ...+....+.||+||.+++.-..
T Consensus 232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9987553 44578888999999999987755
No 267
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.99 E-value=0.0034 Score=56.29 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=46.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCC-----CCCCCCCccce
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVC-----RLPFASGFVDA 235 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~-----~lp~~~~~fD~ 235 (328)
..++||||+|....--.|.....+.+++|.|+++..++.|++++... ++ ..+|.++...-. .+-...+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L--~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL--ESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc--ccceEEEEcCCccccchhhhcccceeeE
Confidence 45899999998754333332212459999999999999999999887 65 677888765321 12223468999
Q ss_pred EEecccccc
Q 020307 236 VHAGAALHC 244 (328)
Q Consensus 236 i~~~~vl~h 244 (328)
.+|+--++.
T Consensus 181 tmCNPPFy~ 189 (299)
T PF05971_consen 181 TMCNPPFYS 189 (299)
T ss_dssp EEE-----S
T ss_pred EecCCcccc
Confidence 999765543
No 268
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.88 E-value=0.022 Score=52.50 Aligned_cols=152 Identities=20% Similarity=0.162 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh----------------CCCceEEEEeCCHHHHHHHHHHHHhc----CcCCCCCeEEEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQD----NTILTSNLALVR 220 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~g~D~s~~~~~~a~~~~~~~----~~~~~~~i~~~~ 220 (328)
..-+|+|+||.+|..+..+... -|..+|+--|.-.+--...-+.+... .-....-+.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4468999999999987766431 12347888886333222221111110 000011233345
Q ss_pred ecCCCCCCCCCccceEEeccccccCCC-h--------------------------------------HHHHHHHHhcccC
Q 020307 221 ADVCRLPFASGFVDAVHAGAALHCWPS-P--------------------------------------SNAVAEISRILRS 261 (328)
Q Consensus 221 ~d~~~lp~~~~~fD~i~~~~vl~h~~d-~--------------------------------------~~~l~~~~r~Lkp 261 (328)
+.+..--+++++.|+++++..||++.. | ..+|+.=.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 666554478999999999999988842 1 1245555667899
Q ss_pred CcEEEEEEeccCCC--Cc-------chhhHHHHHh-------------hhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 262 GGVFVGTTFLRYTS--ST-------SLTGRVLRER-------------ILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 262 gG~l~i~~~~~~~~--~~-------~~~~~~~~~~-------------~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
||+++++.+.+... .. ..+...+... ..-...+.+.+++++.+++.|--.+
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I 248 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEI 248 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEE
Confidence 99999999877641 10 1122222221 1134557889999999988875333
No 269
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.84 E-value=0.076 Score=45.99 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCC-CCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~i~~ 238 (328)
.|++||-+|=.. ..+..++..+...+++.+|+++..++..++..++.++ ++..+..|+.+ +|- -.++||+++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHHhcCCCEEEe
Confidence 578999999544 3445555555667999999999999999999888763 49999999954 442 2478999997
Q ss_pred ccccccCCChHHHHHHHHhcccCCc-EEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 317 (328)
.=. +-..-..-++......||..| ..++.-....+.... ..++++.+.+.||.+......
T Consensus 119 DPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~------------------~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 119 DPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDK------------------WLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHH------------------HHHHHHHHHTS--EEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHH------------------HHHHHHHHHHCCcCHHHHHhh
Confidence 311 000011356788888888766 443322211100000 126788888999987765443
No 270
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.61 E-value=0.0069 Score=53.01 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~i 236 (328)
..|+.|+-+| -.-..+.+++-.+-..++..+|+++..+....+.+++.| ..++..+..|+.+ |++ .+.||++
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~-plpe~~~~kFDvf 225 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRN-PLPEDLKRKFDVF 225 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcc-cChHHHHhhCCee
Confidence 3577899999 445566666665555689999999999999998888876 5678888889865 333 3679998
Q ss_pred EeccccccCCChHHHH-------HHHHhcccCC---cEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAV-------AEISRILRSG---GVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l-------~~~~r~Lkpg---G~l~i~~~ 270 (328)
+. ||...+ ..=...||.- |++.++.-
T Consensus 226 iT--------DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 226 IT--------DPPETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred ec--------CchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 74 564333 3333456654 67777653
No 271
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.58 E-value=0.0041 Score=56.07 Aligned_cols=83 Identities=17% Similarity=0.294 Sum_probs=60.1
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F- 228 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~- 228 (328)
+.+...+++.++|.--|.|..+..+.+..++.+++|+|.++++++.+++++... ..++.++.+++.++. .
T Consensus 14 ~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 14 EALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHHHHHTT
T ss_pred HhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHHHHHcc
Confidence 446677888999999999999999999877789999999999999999887653 468999999987764 2
Q ss_pred CCCccceEEeccc
Q 020307 229 ASGFVDAVHAGAA 241 (328)
Q Consensus 229 ~~~~fD~i~~~~v 241 (328)
....+|.|++.-.
T Consensus 90 ~~~~~dgiL~DLG 102 (310)
T PF01795_consen 90 GINKVDGILFDLG 102 (310)
T ss_dssp TTS-EEEEEEE-S
T ss_pred CCCccCEEEEccc
Confidence 3357888887533
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0052 Score=55.51 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC----CCCCCCCCccce
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~fD~ 235 (328)
..++|||+|.|.|.-+.++....|.. +++.++.|+..-+.......... .....+...|+ ..+| ....|++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~---t~~td~r~s~vt~dRl~lp-~ad~ytl 188 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS---TEKTDWRASDVTEDRLSLP-AADLYTL 188 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc---cccCCCCCCccchhccCCC-ccceeeh
Confidence 45689999999999888888776643 47888888877766665543322 12222222232 2333 2346777
Q ss_pred EEeccccccCCChH---HHHHHHHhcccCCcEEEEEEeccC
Q 020307 236 VHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 236 i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|+..+-|-|..++. ..++.+..++.|||.|+++++..+
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 77766665554432 478999999999999999997654
No 273
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.53 E-value=0.03 Score=48.93 Aligned_cols=111 Identities=16% Similarity=0.049 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc--C-CCCCeEEEEecCCC---CCCCCCc-c
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--I-LTSNLALVRADVCR---LPFASGF-V 233 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~-~~~~i~~~~~d~~~---lp~~~~~-f 233 (328)
...+||++|+|+|.-+..++... ..+|.-.|+..- ++....+....+. . ....+.....+-.+ ..+.... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 46689999999996666666543 458888886443 3333322211110 0 01133333322222 1122334 9
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|+|+...++.+-..+..++..+...|..++.+++..+.+.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999999998999999999999999998888776654
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.46 E-value=0.034 Score=53.95 Aligned_cols=101 Identities=22% Similarity=0.222 Sum_probs=70.0
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-----------C
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------L 226 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----------l 226 (328)
..++.+|+-+|+|. |..+...++.. +.+|+++|.+++.++.+++. ...++..|..+ +
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence 45789999999998 77777777663 34899999999999888763 22222221111 0
Q ss_pred C----------CCC--CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 227 P----------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 227 p----------~~~--~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
. +.+ +.+|+|+.......-+.|..+.++..+.+||||+++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 011 3589999877655445565556999999999999887654
No 275
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.43 E-value=0.1 Score=46.25 Aligned_cols=151 Identities=9% Similarity=-0.045 Sum_probs=91.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-C-------CCCCCcc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-------PFASGFV 233 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-------p~~~~~f 233 (328)
...|+.+|||-=.-...+.. .++.+++=+|. ++.++.-++.+.+.+.....+..++..|+.. + .+..+.-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 34799999997655544432 22345555554 4455555555654332225678889999851 1 1222345
Q ss_pred ceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHHHH-----hhhccCCCCCHHHHHHHHH
Q 020307 234 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRE-----RILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 234 D~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~l~~ll~ 305 (328)
-++++-.++.+++.. ..+|+.+.+...||+.+++.....-.... ....+.... ........++.+++.++|+
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLA 239 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHH
Confidence 577788888888754 47889998888899888876544311100 000111111 1123445678999999999
Q ss_pred HCCCeEEEE
Q 020307 306 SCGLTNYTS 314 (328)
Q Consensus 306 ~~Gf~~v~~ 314 (328)
.+||+..+.
T Consensus 240 ~~Gw~~~~~ 248 (260)
T TIGR00027 240 ERGWRASEH 248 (260)
T ss_pred HCCCeeecC
Confidence 999998763
No 276
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.33 Score=42.16 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=71.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHH----hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC----CCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC----RLPFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~----~lp~~~ 230 (328)
...+..++|+|+|+..=++.|.+ .+.-.+++.+|+|...++...+.+..... .-.+.-+++|.+ .+| ..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~-~~ 152 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELP-RG 152 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhccc-CC
Confidence 34577999999999876665554 34447899999999999886666554322 334555667763 233 22
Q ss_pred CccceEEeccccccCC-Ch-HHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWP-SP-SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~-d~-~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++==.++....|..+. ++ ..+|..+...|+||-++++-+-
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 2222333445566553 33 4789999999999998877554
No 277
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.07 Score=48.85 Aligned_cols=115 Identities=20% Similarity=0.166 Sum_probs=82.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCC----ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTY----SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--- 228 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--- 228 (328)
+|...++.+|||+....|.=+..+.+.... ..|++=|.+..-+...+..+.... .+++.+...|+...|-
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceecccccc
Confidence 467789999999999999988888776432 279999999998888888775433 5566666666654441
Q ss_pred ------CCCccceEEec------cccccCCCh-----------------HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 229 ------ASGFVDAVHAG------AALHCWPSP-----------------SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 229 ------~~~~fD~i~~~------~vl~h~~d~-----------------~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
....||-|++. .++.+-++. ..+|+.-.++||+||.++.+|-...
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 23458888863 333333321 2578888999999999999996544
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.34 E-value=0.012 Score=52.08 Aligned_cols=108 Identities=13% Similarity=0.175 Sum_probs=82.1
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEecCCCC--CCCCCccc
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL--PFASGFVD 234 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l--p~~~~~fD 234 (328)
.....+++|-||.|.|.+.+..+++-.-.++.-+|++...++..++.+...-. ...+++.+..||-..+ ....++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 34567899999999999999998884445789999999999999888764211 1267899999985332 13478999
Q ss_pred eEEeccccccCCCh---------HHHHHHHHhcccCCcEEEEEEe
Q 020307 235 AVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 235 ~i~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|+... .|| ..++..+.+.||+||+++...-
T Consensus 198 Vii~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 999643 243 3577889999999999988763
No 279
>PRK10742 putative methyltransferase; Provisional
Probab=96.32 E-value=0.025 Score=49.30 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=62.9
Q ss_pred ccccCCC--eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc------CcCCCCCeEEEEecCCCC-C
Q 020307 157 FKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------NTILTSNLALVRADVCRL-P 227 (328)
Q Consensus 157 l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~~~~~~~i~~~~~d~~~l-p 227 (328)
....++. +|||.-+|.|..+..++..|. +|+++|-++......++.+... +..-..++.++.+|.... .
T Consensus 82 vglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 82 VGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred hCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 4445555 899999999999999999976 7999999999999888887763 100014688888887442 2
Q ss_pred CCCCccceEEecccccc
Q 020307 228 FASGFVDAVHAGAALHC 244 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h 244 (328)
-...+||+|++.=.+.|
T Consensus 160 ~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 160 DITPRPQVVYLDPMFPH 176 (250)
T ss_pred hCCCCCcEEEECCCCCC
Confidence 12347999998655544
No 280
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.021 Score=45.32 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=74.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
++...+.++.+|+|+|.|+.....++.+ -...+|+|+++-.+.+++-..-.++. .....|..-|+-+..+.+ |..
T Consensus 67 ll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~RkdlwK~dl~d--y~~ 141 (199)
T KOG4058|consen 67 LLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKDLWKVDLRD--YRN 141 (199)
T ss_pred HccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhhhhhccccc--cce
Confidence 4455566799999999999999999987 23789999999999988877666654 677888888887776554 444
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++.+.+=.-++|.+ .++..-+..|..++..-+
T Consensus 142 vviFgaes~m~dLe---~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 142 VVIFGAESVMPDLE---DKLRTELPANTRVVACRF 173 (199)
T ss_pred EEEeehHHHHhhhH---HHHHhhCcCCCeEEEEec
Confidence 44444422223332 344445667777776554
No 281
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.23 E-value=0.078 Score=49.22 Aligned_cols=98 Identities=24% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC------CCCCC-Cc
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------LPFAS-GF 232 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~------lp~~~-~~ 232 (328)
++.+|+-+|||. |.++..+++...-.+++.+|.+++-++.|++.... ........+ ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCCC
Confidence 344999999998 88888888876567999999999999999884321 111111110 01112 26
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+|+++-.-. -...+..+.+.++|||.+++.-....
T Consensus 239 ~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 239 ADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 899985443 23468999999999999888776544
No 282
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.16 E-value=0.073 Score=47.92 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=70.6
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCC------CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL------PF 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l------p~ 228 (328)
..+++.+||-+|+|. |..+...++...-.+|+.+|+++..++.|++ +.. ..+....... ..+ -.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga------~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA------TVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC------eEEeeccccccHHHHHHHHHhhc
Confidence 456789999999997 7777777777546699999999999999998 321 1111111100 010 02
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
....+|+.+....+ +..++.....+|.||.+++..+...
T Consensus 239 g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred cccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 23458888865543 4457778889999999888887665
No 283
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.02 E-value=0.074 Score=49.98 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=68.7
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-----C-CC-C
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----L-PF-A 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----l-p~-~ 229 (328)
...++.+||.+|+|. |..+..+++.....+++++|.+++..+.+++.. ...++...-.+ + .+ .
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~~ 251 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELTG 251 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHcC
Confidence 345678999999988 888888888753336999999999988887631 11222111110 0 11 2
Q ss_pred CCccceEEeccc-----------cccC----CChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAA-----------LHCW----PSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~v-----------l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+|+|+-.-. +.|. +++...+.++.+.|+++|+++....
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 236898886421 1222 4566788999999999999988753
No 284
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.02 E-value=0.035 Score=49.52 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=66.0
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F 228 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~ 228 (328)
+.|...+++..+|.--|.|..+..+.+.++ ..+++|+|.++.+++.|++++... ..++.++...+.++. .
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHHHHHHHhc
Confidence 346777889999999999999999998865 346999999999999999998775 468999998876653 2
Q ss_pred CCCccceEEecc
Q 020307 229 ASGFVDAVHAGA 240 (328)
Q Consensus 229 ~~~~fD~i~~~~ 240 (328)
..+.+|.|++.-
T Consensus 93 ~i~~vDGiL~DL 104 (314)
T COG0275 93 GIGKVDGILLDL 104 (314)
T ss_pred CCCceeEEEEec
Confidence 235788888653
No 285
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.92 E-value=0.011 Score=44.32 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 194 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s 194 (328)
+....+|+|||+|.+...|...|. .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 455799999999999999999987 88999973
No 286
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.80 E-value=0.031 Score=46.36 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=77.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHH----hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----- 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----- 227 (328)
+-..++..|+|+|.-.|..+...+. .|...+|+++|++-..+..+... .+++.|+.++-....
T Consensus 65 lw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi 136 (237)
T COG3510 65 LWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQI 136 (237)
T ss_pred HHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHH
Confidence 3344567999999999876655554 36556999999987765544432 578999999876643
Q ss_pred --CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 228 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+++.--+.++-..-||.....+.|+.+.++|.-|-++++.+.+.+
T Consensus 137 ~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 137 RRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred HHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccccc
Confidence 2233334555556666665667788889999999999999887654
No 287
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.79 E-value=0.14 Score=51.77 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=67.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHH-HHHHHhcCcCCCCCeEEEEecC---CCCCCCCCccceEEe
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVHA 238 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~i~~ 238 (328)
..+.-.|.|+=.....|.+.+|+.+++-+|-+...-+.+ +..+.... ....+++.+.- ....|++=+-=.|+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~---~ge~dILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA---NGEADILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh---CCCCCeeecchhhhcCCCcccceEEEEEe
Confidence 368888889989999999999999999999877664332 22233222 33455555542 233455444445556
Q ss_pred ccccccCCChH---HHHHHHHhcc----c--CCcEEEEEEeccC
Q 020307 239 GAALHCWPSPS---NAVAEISRIL----R--SGGVFVGTTFLRY 273 (328)
Q Consensus 239 ~~vl~h~~d~~---~~l~~~~r~L----k--pgG~l~i~~~~~~ 273 (328)
.+..-+.+|.. ++++.+..+. + .-|.+++.+.+..
T Consensus 561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 66677777763 4444444333 1 4467888887765
No 288
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.77 E-value=0.058 Score=54.55 Aligned_cols=127 Identities=16% Similarity=0.105 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh-------CC-----CceEEEEeCCH---HHHHHHH-----------HHHHh-----cC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS-------GT-----YSGVVALDFSE---NMLRQCY-----------DFIKQ-----DN 209 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~-------~~-----~~~v~g~D~s~---~~~~~a~-----------~~~~~-----~~ 209 (328)
+.-+|+|+|=|+|.+.....+. .+ ..+++++|..+ +.+..+. +.... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999865544432 12 35789999643 3332222 11111 01
Q ss_pred c------CCCCCeEEEEecCCC-CCCCCCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccCCCCcc
Q 020307 210 T------ILTSNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTS 278 (328)
Q Consensus 210 ~------~~~~~i~~~~~d~~~-lp~~~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 278 (328)
. ...-.+++..+|+.+ ++--...+|+++....- =-.+| ..+++.+.++++|||.+.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs-P~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFA-PAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCC-CccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 0 001244566778743 22123569999976421 11234 589999999999999988644
Q ss_pred hhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 279 LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
....+++-|.++||++.+.
T Consensus 207 -----------------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 -----------------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred -----------------hHHHHHHHHHHcCCeeeec
Confidence 2346788899999987653
No 289
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.77 E-value=0.17 Score=41.61 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=78.0
Q ss_pred EcCCcCHHHHHHHHhCC-CceEEE--EeCCHHHHHHHH---HHHHhcCcCCCCCe-EEEEecCCCCC----CCCCccceE
Q 020307 168 VSCGSGLFSRKFAKSGT-YSGVVA--LDFSENMLRQCY---DFIKQDNTILTSNL-ALVRADVCRLP----FASGFVDAV 236 (328)
Q Consensus 168 iGcG~G~~~~~l~~~~~-~~~v~g--~D~s~~~~~~a~---~~~~~~~~~~~~~i-~~~~~d~~~lp----~~~~~fD~i 236 (328)
||=|.=.|+..|++... ..++++ .|..++..+... .++.... ..++ .....|+..+. ...+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCEE
Confidence 56666667788888744 445544 444433333222 2222211 1222 23445776654 356889999
Q ss_pred EeccccccCC-----C----------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHH
Q 020307 237 HAGAALHCWP-----S----------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE 301 (328)
Q Consensus 237 ~~~~vl~h~~-----d----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 301 (328)
+.++ -|+. . ...+++.+..+|+++|.+.|+-....+ |+...+.
T Consensus 80 iFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------------y~~W~i~ 137 (166)
T PF10354_consen 80 IFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------------YDSWNIE 137 (166)
T ss_pred EEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------------CccccHH
Confidence 9875 4544 1 136789999999999999998754321 4666888
Q ss_pred HHHHHCCCeEEEEEEe
Q 020307 302 DLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 302 ~ll~~~Gf~~v~~~~~ 317 (328)
++.+++||..++....
T Consensus 138 ~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 138 ELAAEAGLVLVRKVPF 153 (166)
T ss_pred HHHHhcCCEEEEEecC
Confidence 9999999998886543
No 290
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.69 E-value=0.051 Score=46.77 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=72.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 232 (328)
+..+++.+||-+|.++|....+..+. +|..-|+++|.|+..=+......+. .+|+.-+..|+.... ..-+-
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence 56778999999999999999888886 7888899999987644333322222 567777888885522 11235
Q ss_pred cceEEeccccccCCChH---HHHHHHHhcccCCcEEEEEEec
Q 020307 233 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|+|++. ++.|. .+.-+..-.||+||.++++--.
T Consensus 227 VDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 227 VDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 6777653 33343 2334566789999999887643
No 291
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.64 E-value=0.18 Score=46.47 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=58.9
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
..++.+||-+|+|. |.++..++++ ....+++++|.+++-++.+++ + . .. ....+ +. .+..+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~-------~-~~-~~~~~---~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A-------D-ET-YLIDD---IP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c-------C-ce-eehhh---hh-hccCCcEE
Confidence 34688999999876 6666666654 323589999999888777754 1 1 11 11111 11 11247888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+-.-. . +.-...+....+.|++||++++.-.
T Consensus 227 iD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 227 FECVG--G-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EECCC--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 74221 0 0023468889999999999987654
No 292
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.63 E-value=0.044 Score=51.24 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEecCCCCC-CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP-FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp-~~~~~fD~i~ 237 (328)
.+.+|||.=+|+|-=+..++.. ....+|+.-|+|++.++..+++++.+++ .. .+.+...|+..+= .....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEE
Confidence 3458999999999866666655 3345899999999999999999988775 33 5788888875532 2467899998
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
. .=+..|..+|..+.+.+|.||.|.++.-.
T Consensus 127 l----DPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 127 L----DPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp E------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred e----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 4 44567899999999999999999997643
No 293
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.45 E-value=0.009 Score=45.01 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=41.9
Q ss_pred ccceEEeccccccC----CCh--HHHHHHHHhcccCCcEEEEEEeccC--CCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 020307 232 FVDAVHAGAALHCW----PSP--SNAVAEISRILRSGGVFVGTTFLRY--TSSTSLTGRVLRERILQNYNYLTEEEIEDL 303 (328)
Q Consensus 232 ~fD~i~~~~vl~h~----~d~--~~~l~~~~r~LkpgG~l~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 303 (328)
.||+|+|..|.-++ .|. ..+++.+.+.|+|||++++..-... ..... ..+...... .... +.++++...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~-~~~~~~~n~-~~i~-lrP~~F~~~ 77 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKR-LSEEIRENY-KSIK-LRPDQFEDY 77 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTT-S-HHHHHHH-HH-----GGGHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhh-hhHHHHhHH-hceE-EChHHHHHH
Confidence 48999999886433 122 4789999999999999998552111 00000 112222211 1122 566778888
Q ss_pred HHH--CCCeEEEE
Q 020307 304 CTS--CGLTNYTS 314 (328)
Q Consensus 304 l~~--~Gf~~v~~ 314 (328)
|.. .||..++.
T Consensus 78 L~~~evGF~~~e~ 90 (110)
T PF06859_consen 78 LLEPEVGFSSVEE 90 (110)
T ss_dssp HTSTTT---EEEE
T ss_pred HHhcccceEEEEE
Confidence 877 69987764
No 294
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=95.41 E-value=0.0061 Score=36.62 Aligned_cols=35 Identities=20% Similarity=0.533 Sum_probs=23.5
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
...||.|+..+...+.. ++ .....++|++|++.|.
T Consensus 2 ~i~CP~C~~~f~v~~~~---l~-~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK---LP-AGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHH---cc-cCCcEEECCCCCcEee
Confidence 46799999977554321 11 1225899999999874
No 295
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.35 E-value=0.28 Score=47.63 Aligned_cols=142 Identities=18% Similarity=0.108 Sum_probs=90.4
Q ss_pred chHHHHHHhhHHhhhhc-----CCCCCcchh-----hhccccCCCeEEEEcCCcCHHHHHHHHhCC----CceEEEEeCC
Q 020307 129 PFVSFLYERGWRQNFNR-----SGFPGPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFS 194 (328)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s 194 (328)
+.+...|+...++.... ..++.|... +.+.+.+..+|.|..||+|.++....+... ...++|.|++
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 34445555544443322 224444443 455555677999999999998777765421 2579999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-C----CCCccceEEecccc---ccCC--------------------
Q 020307 195 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F----ASGFVDAVHAGAAL---HCWP-------------------- 246 (328)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~----~~~~fD~i~~~~vl---~h~~-------------------- 246 (328)
+.....|+-+.--++.. ..+....+|-..-| . ..+.||+|+++--+ .+..
T Consensus 224 ~~t~~l~~mN~~lhgi~--~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
T COG0286 224 DTTYRLAKMNLILHGIE--GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK 301 (489)
T ss_pred HHHHHHHHHHHHHhCCC--ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence 99999999988777642 14455555543333 2 33679988875221 1110
Q ss_pred -Ch-HHHHHHHHhcccCCcEEEEEEecc
Q 020307 247 -SP-SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 247 -d~-~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.. ..+++.+...|+|||+..++.+..
T Consensus 302 ~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 302 NSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 01 468999999999999877776553
No 296
>PHA01634 hypothetical protein
Probab=95.21 E-value=0.19 Score=38.96 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.+++|+|||.+-|..+..++-+|. ..|+++++++...+..++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence 688999999999999999988874 5799999999999999887664
No 297
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.08 E-value=0.12 Score=47.43 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEecc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 240 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~ 240 (328)
..+|||.=+|+|.=+..++...+...++.-|+|+..++..++++..+. ..+...+..|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~ID--- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVID--- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEe---
Confidence 679999999999887777777665589999999999999999988753 34555555676443221 36788876
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|.=+..|..++..+.+.++.||++-++--.
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 344567889999999999999999886543
No 298
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.06 E-value=0.1 Score=48.06 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=60.9
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+||-.|+|. |.++..+++.....+++++|.+++.++.+++. .. ..-+.....++.++....+.+|+|+-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga-----~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA-----DKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC-----cEEecCCcccHHHHhccCCCCCEEEE
Confidence 3578999999875 66777777764223689999999988888762 10 00000001112111111235888764
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
. ...+ ..+....+.|++||++++...
T Consensus 242 ~-----~G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 242 V-----SGHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred C-----CCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 3 3333 357888899999999988764
No 299
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.01 E-value=0.11 Score=50.49 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=66.3
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-------------
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------------- 225 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~------------- 225 (328)
.++.++|-+|+|. |..+..+++.. +..|+++|.+++.++.++.. ...++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence 4578999999997 66666555552 33899999999987777652 12222222211
Q ss_pred ----------CCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 226 ----------LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 226 ----------lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
++-.-..+|+|+..-.+.--+.|.-+.+++.+.+|||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111124699998877676666776778999999999998763
No 300
>PRK00420 hypothetical protein; Validated
Probab=94.89 E-value=0.016 Score=43.92 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=23.1
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
-.||.|+.++..... +...|+.||..+...
T Consensus 24 ~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLFELKD----------GEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCcceecCC----------CceECCCCCCeeeec
Confidence 469999999976332 689999999876443
No 301
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.83 E-value=0.034 Score=43.38 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=56.3
Q ss_pred CCeEEEEecCCC-CCCCCCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh
Q 020307 214 SNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI 288 (328)
Q Consensus 214 ~~i~~~~~d~~~-lp~~~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 288 (328)
..+.+..+|+.+ ++--+..||+|+.... ---.+| ..+++++.++++|||.+...+.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------------------ 91 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLATYSS------------------ 91 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------------
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEeec------------------
Confidence 356677778743 3322368999997642 222345 5899999999999998776331
Q ss_pred hccCCCCCHHHHHHHHHHCCCeEEEEEEe-CcEEEEEEeCC
Q 020307 289 LQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP 328 (328)
Q Consensus 289 ~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~~~~~~a~k~ 328 (328)
...+++.|.++||.+.+.... +.--++.|.||
T Consensus 92 --------a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 92 --------AGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp --------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred --------hHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 236889999999998875443 34577777775
No 302
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.81 E-value=0.05 Score=46.45 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=68.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCC---------ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----- 227 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----- 227 (328)
-.+++|+....|.|+..|.++... ..++++|+-+-. ..+.+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHH
Confidence 468999999999999999876321 128999984411 1568888999997743
Q ss_pred ---CCCCccceEEeccc-----cccCCCh------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 228 ---FASGFVDAVHAGAA-----LHCWPSP------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 228 ---~~~~~fD~i~~~~v-----l~h~~d~------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|.....|+|+|.+. +|.+..- ...|.-...+|||||.|+.--+..
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 55668999999765 3333221 245677778999999998765543
No 303
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.75 E-value=0.095 Score=45.41 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=47.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH---hcCc---CCCCCeEEEEecCCC-CCCCCCccce
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK---QDNT---ILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~~---~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
.+|||.-+|-|.-+..++..|. +|+++|-|+-+....++-+. ...- ....++.++.+|..+ ++.++.+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 4899999999999998888775 99999999987666554332 2110 001378999999855 4555789999
Q ss_pred EEecccccc
Q 020307 236 VHAGAALHC 244 (328)
Q Consensus 236 i~~~~vl~h 244 (328)
|.+.=.+.|
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998766655
No 304
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.67 E-value=0.36 Score=43.78 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
++.++|-+|+|. |.++..+++......++++|.+++.++.+... . ++ |.... ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---------~---~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---------E---VL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---------c---cc--Chhhc--cCCCCCEEEEC
Confidence 466889889876 77878787764223477889888766655431 0 01 11110 13458888743
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
- ..+ ..+..+.+.|+++|++++.-.
T Consensus 208 ~-----G~~-~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 S-----GDP-SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred C-----CCH-HHHHHHHHhhhcCcEEEEEee
Confidence 3 233 357888999999999987654
No 305
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=94.64 E-value=0.018 Score=31.53 Aligned_cols=24 Identities=25% Similarity=0.647 Sum_probs=18.8
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.||.|+..... ..-.|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999987744 4678999998774
No 306
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=94.57 E-value=0.025 Score=39.34 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=34.8
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeC--CCCccccCccceeeeeccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~~ 110 (328)
++.||.|++..........+.. ....+..|. .||+.|...+.+...+...
T Consensus 1 mm~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~es~s~tis~p 52 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYESVQRYIVKP 52 (72)
T ss_pred CccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence 4689999997644333222222 555688998 9999998888877776653
No 307
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.022 Score=40.61 Aligned_cols=30 Identities=27% Similarity=0.732 Sum_probs=22.9
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+...||.|+.+-..... .++|.|..|+..|
T Consensus 34 ~~~~Cp~C~~~~VkR~a---------~GIW~C~kCg~~f 63 (89)
T COG1997 34 AKHVCPFCGRTTVKRIA---------TGIWKCRKCGAKF 63 (89)
T ss_pred cCCcCCCCCCcceeeec---------cCeEEcCCCCCee
Confidence 56789999998433332 3799999999877
No 308
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.54 E-value=0.081 Score=46.69 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHHHHh
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.-+|+|+|.|+|.++..+.+... ..+++-+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 36999999999999988876421 35899999999998888887765
No 309
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.54 E-value=0.15 Score=39.61 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=70.6
Q ss_pred CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----C-CCCCccceEEecccccc
Q 020307 171 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASGFVDAVHAGAALHC 244 (328)
Q Consensus 171 G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~~fD~i~~~~vl~h 244 (328)
|.|.++..+++... .+++++|.++.-++.+++. .-..++..+-.++ . .....+|+|+-.-
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~---------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~---- 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL---------GADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV---- 66 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT---------TESEEEETTTSSHHHHHHHHTTTSSEEEEEESS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh---------cccccccccccccccccccccccccceEEEEec----
Confidence 34777888888753 7999999999998888763 1112222211111 1 2234799988543
Q ss_pred CCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch-hhHHHHHh-hhccCCCCCHHHHHHHHHH
Q 020307 245 WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL-TGRVLRER-ILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 245 ~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~ll~~ 306 (328)
.. ...++....+|+|+|++++...... ...++ ....+... ........+.+++++.++.
T Consensus 67 -g~-~~~~~~~~~~l~~~G~~v~vg~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 127 (130)
T PF00107_consen 67 -GS-GDTLQEAIKLLRPGGRIVVVGVYGG-DPISFNLMNLMFKEITIRGSWGGSPEDFQEALQL 127 (130)
T ss_dssp -SS-HHHHHHHHHHEEEEEEEEEESSTST-SEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHH
T ss_pred -Cc-HHHHHHHHHHhccCCEEEEEEccCC-CCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHH
Confidence 22 4578999999999999999886651 12222 12222221 1133344456777776653
No 310
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.53 E-value=1 Score=44.02 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=56.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHH----HHHHHHHHHhcCcCCCCCeEEEEe-cCCC--CCCCCCccce
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENM----LRQCYDFIKQDNTILTSNLALVRA-DVCR--LPFASGFVDA 235 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~----~~~a~~~~~~~~~~~~~~i~~~~~-d~~~--lp~~~~~fD~ 235 (328)
..+--.|.|+=.....+.+.+|+..+.-+|-+... .+..-+.+.. ..+.++.+ ++.. +.++ .+++
T Consensus 262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~------g~~~ILVgT~~i~kG~d~~--~v~l 333 (505)
T TIGR00595 262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN------GKADILIGTQMIAKGHHFP--NVTL 333 (505)
T ss_pred CeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc------CCCCEEEeCcccccCCCCC--cccE
Confidence 45677888888888899998888888888865322 2223333332 23344443 2211 2222 3445
Q ss_pred EE--eccccccCCCh---HHHHHHHH----hcc--cCCcEEEEEEeccCC
Q 020307 236 VH--AGAALHCWPSP---SNAVAEIS----RIL--RSGGVFVGTTFLRYT 274 (328)
Q Consensus 236 i~--~~~vl~h~~d~---~~~l~~~~----r~L--kpgG~l~i~~~~~~~ 274 (328)
|+ ..+..-+.+|- +..++.+. |.- ..+|.+++.+.....
T Consensus 334 V~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 334 VGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred EEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 53 33333344543 33333333 332 356889988876653
No 311
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.49 E-value=0.4 Score=46.01 Aligned_cols=106 Identities=9% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 162 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...|+-+|.|-|-+.....+. ....+++++|-+++++...+.+ .... +..+++++..|+..++.+..+.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~--W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC--WDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh--hcCeeEEEeccccccCCchhhccchH
Confidence 457899999999876555432 2345789999999988776652 1111 36789999999999885557899988
Q ss_pred eccccccCCCh---HHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+ ..|.-+.|- ...|..+.+.|||+|+.+=..+.
T Consensus 445 S-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 445 S-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred H-HhhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence 5 334445443 36799999999999887655544
No 312
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=94.46 E-value=0.029 Score=35.48 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=22.6
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.||..+...... ..++|+.||...
T Consensus 2 ~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~ 31 (46)
T PRK00398 2 AEYKCARCGREVELDEYG---------TGVRCPYCGYRI 31 (46)
T ss_pred CEEECCCCCCEEEECCCC---------CceECCCCCCeE
Confidence 457899999988664432 378999998765
No 313
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.43 E-value=0.68 Score=40.40 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=60.4
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----CCCCCcc
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f 233 (328)
.++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++.- ...++...-... ....+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELG---------ADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC---------CceeccCCcCCHHHHHHHhcCCCC
Confidence 5678999999986 66666666653 358999999988777765421 001111100000 0123568
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|+++.... .+ ..+..+.+.|+++|.++.....
T Consensus 203 d~vi~~~~-----~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVG-----GP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCC-----CH-HHHHHHHHhcccCCEEEEEccC
Confidence 99885432 21 4577788999999998876644
No 314
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=94.35 E-value=0.019 Score=34.20 Aligned_cols=34 Identities=18% Similarity=0.537 Sum_probs=22.5
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.+.||.|+..+...+.. .+ -....++|++|++.|
T Consensus 2 ~i~Cp~C~~~y~i~d~~---ip-~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK---IP-PKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHH---CC-CCCcEEECCCCCCEe
Confidence 46799999977553321 11 111479999999876
No 315
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=94.33 E-value=0.023 Score=33.31 Aligned_cols=30 Identities=37% Similarity=0.699 Sum_probs=15.6
Q ss_pred ccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
||.||+++....+.+. ....+.|+.||...
T Consensus 3 C~~CG~~l~~~ip~gd-----~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGD-----DRERLVCPACGFIH 32 (34)
T ss_dssp -TTT--B-EEE--TT------SS-EEEETTTTEEE
T ss_pred cccccChhhhhcCCCC-----CccceECCCCCCEE
Confidence 9999999876544321 12478999998653
No 316
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.31 E-value=0.98 Score=45.86 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=56.9
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHH----HHHHHHHHHHhcCcCCCCCeEEEEe-cCC--CCCCCCCccce
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSEN----MLRQCYDFIKQDNTILTSNLALVRA-DVC--RLPFASGFVDA 235 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~----~~~~a~~~~~~~~~~~~~~i~~~~~-d~~--~lp~~~~~fD~ 235 (328)
..+-..|-|+=.....+.+.+|+..+.-+|-+.. ..+..-+.+.. ..+.++.+ ++. .+.++ .+++
T Consensus 430 ~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~------g~~~ILVgT~~iakG~d~p--~v~l 501 (679)
T PRK05580 430 TDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR------GEADILIGTQMLAKGHDFP--NVTL 501 (679)
T ss_pred CeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc------CCCCEEEEChhhccCCCCC--CcCE
Confidence 4577778888888888888888778888875432 23333333332 23344443 221 12222 3455
Q ss_pred EE--eccccccCCCh---HHHHHHHHhcc------cCCcEEEEEEeccC
Q 020307 236 VH--AGAALHCWPSP---SNAVAEISRIL------RSGGVFVGTTFLRY 273 (328)
Q Consensus 236 i~--~~~vl~h~~d~---~~~l~~~~r~L------kpgG~l~i~~~~~~ 273 (328)
|+ ..+..-+.+|. +.+++.+..+. ..+|.+++.+.+..
T Consensus 502 V~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 502 VGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred EEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 53 33334444543 34444443332 45789999887664
No 317
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.18 E-value=0.055 Score=47.81 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHH-------HHHH--hcCcCCCCCeEEEEecCCCCCC-CC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY-------DFIK--QDNTILTSNLALVRADVCRLPF-AS 230 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~-------~~~~--~~~~~~~~~i~~~~~d~~~lp~-~~ 230 (328)
.+++|||+|||.|.-...+...+ ...+...|.+...++.-. ..+. .... ..-..+...++.+.-+ ..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~--~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN--HKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhc--ccceeccccccccchhhhc
Confidence 57899999999998887777776 247888888877763211 0000 0000 0111111110001110 11
Q ss_pred C--ccceEEeccccccCCChHHH-HHHHHhcccCCcEEEEEE
Q 020307 231 G--FVDAVHAGAALHCWPSPSNA-VAEISRILRSGGVFVGTT 269 (328)
Q Consensus 231 ~--~fD~i~~~~vl~h~~d~~~~-l~~~~r~LkpgG~l~i~~ 269 (328)
+ .||+|.++..+.-....... +.....+++++|++++.-
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 2 78999998888776665555 667777889999887744
No 318
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=94.15 E-value=0.025 Score=43.94 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=22.3
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-...||.||.+|+..+ |.++|+.|++..
T Consensus 27 L~~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~ 54 (131)
T COG1645 27 LAKHCPKCGTPLFRKD-----------GEVFCPVCGYRE 54 (131)
T ss_pred HHhhCcccCCcceeeC-----------CeEECCCCCceE
Confidence 3456999999998844 699999998643
No 319
>PHA00626 hypothetical protein
Probab=94.13 E-value=0.034 Score=35.99 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=20.8
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
+.||.|++.....-.. -.-.++.+.|+.||..|.
T Consensus 1 m~CP~CGS~~Ivrcg~----cr~~snrYkCkdCGY~ft 34 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT----MRGWSDDYVCCDCGYNDS 34 (59)
T ss_pred CCCCCCCCceeeeece----ecccCcceEcCCCCCeec
Confidence 3699999953222100 001236899999998873
No 320
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.76 E-value=1.9 Score=40.44 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=65.0
Q ss_pred cccCCCeEEEEcCCcCH----HHHHHHHh---CCCceEEEEeC----CHHHHHHHHHHHHhcCcCCCCCeEEEEe---cC
Q 020307 158 KSAQGGLLVDVSCGSGL----FSRKFAKS---GTYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALVRA---DV 223 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~----~~~~l~~~---~~~~~v~g~D~----s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d~ 223 (328)
...+.-.|+|+|.|.|. +...|+.+ -|..+++|++. +...++.+.+++....-...-...|... +.
T Consensus 107 ~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~ 186 (374)
T PF03514_consen 107 EGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESL 186 (374)
T ss_pred ccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCch
Confidence 33455689999999996 45555554 25678999999 8888888877765421000123333332 22
Q ss_pred CCCC-----CCCCccceEEeccccccCCC-------hHHHHHHHHhcccCCcEEEEEEec
Q 020307 224 CRLP-----FASGFVDAVHAGAALHCWPS-------PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 224 ~~lp-----~~~~~fD~i~~~~vl~h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.+. ..++..=+|-+...|||+.+ |...+-...+.|+|.-++ +++..
T Consensus 187 e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~e 245 (374)
T PF03514_consen 187 EDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQE 245 (374)
T ss_pred hhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeec
Confidence 3321 22333334445666788862 333444555678998444 44443
No 321
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=93.65 E-value=0.038 Score=31.33 Aligned_cols=26 Identities=19% Similarity=0.649 Sum_probs=14.5
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.||.|++.....+. ..+.|+.|++.+
T Consensus 4 ~Cp~C~se~~y~D~----------~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTYEDG----------ELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----EE-S----------SSEEETTTTEEE
T ss_pred CCCCCCCcceeccC----------CEEeCCcccccC
Confidence 59999998877554 489999998754
No 322
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=93.59 E-value=0.085 Score=34.45 Aligned_cols=31 Identities=23% Similarity=0.581 Sum_probs=22.9
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.+.||.|++.+...+.. . ...+.|+.||..+
T Consensus 2 ~~~CP~CG~~iev~~~~------~-GeiV~Cp~CGael 32 (54)
T TIGR01206 2 QFECPDCGAEIELENPE------L-GELVICDECGAEL 32 (54)
T ss_pred ccCCCCCCCEEecCCCc------c-CCEEeCCCCCCEE
Confidence 46799999988664321 1 2478999999988
No 323
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.12 Score=49.19 Aligned_cols=121 Identities=18% Similarity=0.135 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-------CCCCCCcc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------LPFASGFV 233 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-------lp~~~~~f 233 (328)
.+..+|-+|-|.|.+...+....+..+++++++++.+++.|.+.+.-.. ..+..+...|-.. ..-.+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence 4568899999999999999999888899999999999999998764321 1122333333211 11135678
Q ss_pred ceEEec----cccccCCCh------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH
Q 020307 234 DAVHAG----AALHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 285 (328)
Q Consensus 234 D~i~~~----~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 285 (328)
|++... . .+-+..| ..+|..+...|.|.|.+++....+++...+-+...+.
T Consensus 372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~ 432 (482)
T KOG2352|consen 372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLA 432 (482)
T ss_pred cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhh
Confidence 988852 2 3333333 3678999999999999999887777655554443333
No 324
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=93.53 E-value=0.04 Score=34.26 Aligned_cols=29 Identities=28% Similarity=0.592 Sum_probs=19.5
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+.||.|++.....+. ..+.+.|+.||..-
T Consensus 1 m~Cp~Cg~~~~~~D~--------~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFDP--------ERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEET--------TTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEcC--------CCCeEECCCCCCEe
Confidence 479999997633222 23788999998654
No 325
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.48 E-value=0.27 Score=44.03 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=76.9
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC--CCccceEEeccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAA 241 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~i~~~~v 241 (328)
+++|+-||.|.+...+...| ...+.++|+++..++..+.++. .. ++.+|+.++... ...+|+++...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 68999999999999998887 3468999999999988877642 22 566777766432 357999997643
Q ss_pred cccC---------CChH-HHHHHHHh---cccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCC
Q 020307 242 LHCW---------PSPS-NAVAEISR---ILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 242 l~h~---------~d~~-~~l~~~~r---~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~G 308 (328)
...+ .|+. .++.++.+ .++|. +++.+.... + .. .......+.+.+.|++.|
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g-----~-~~--------~~~~~~~~~i~~~l~~~G 135 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG-----L-LT--------HDNGNTLKVILNTLEELG 135 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc-----h-hc--------cCchHHHHHHHHHHHhCC
Confidence 2211 2333 23333333 34554 444443221 0 00 001123457888889999
Q ss_pred CeEEEE
Q 020307 309 LTNYTS 314 (328)
Q Consensus 309 f~~v~~ 314 (328)
|.+...
T Consensus 136 Y~~~~~ 141 (275)
T cd00315 136 YNVYWK 141 (275)
T ss_pred cEEEEE
Confidence 976554
No 326
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.35 E-value=0.95 Score=41.50 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=59.3
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
..++.+||-.|+|. |.++..+++.. +.++++++.+++-.+.+++. | .. .++ +.... ..+.+|+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~----G----a~-~vi--~~~~~--~~~~~d~~i 228 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL----G----AA-SAG--GAYDT--PPEPLDAAI 228 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh----C----Cc-eec--ccccc--CcccceEEE
Confidence 45688999999764 55666666663 44899999999888777663 1 11 111 11111 123578765
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.... .+ ..+....+.|++||++++.-.
T Consensus 229 ~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAP-----AG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence 4332 22 368889999999999988664
No 327
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.29 E-value=1 Score=45.44 Aligned_cols=96 Identities=18% Similarity=0.074 Sum_probs=59.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc-
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA- 240 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~- 240 (328)
+..+.-.|-|+-.....|.+.+|+..|.-+|-+. .++ .+ .....++.+.-...|...+.+.+|...+
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~----~~-------~~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVD----TV-------DAGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHH----hh-------ccCCCEEEECCCCcccccCCceEEEEEcc
Confidence 3457888999999999999999988999888542 222 12 1245667776433333345677776443
Q ss_pred -ccccCCCh---HHHHHHHHhcc------cCCcEEEEEE
Q 020307 241 -ALHCWPSP---SNAVAEISRIL------RSGGVFVGTT 269 (328)
Q Consensus 241 -vl~h~~d~---~~~l~~~~r~L------kpgG~l~i~~ 269 (328)
.+-+.+|- +.+++.+..+. +++|.+++.+
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 23344544 45555444443 3468888775
No 328
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.24 E-value=0.21 Score=46.72 Aligned_cols=100 Identities=12% Similarity=0.180 Sum_probs=65.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEeccc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAA 241 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~v 241 (328)
..|||||.|||.++....+.+. ..|+++|.-..|.+.|++.....+. .++|.++.-.-.++..- ....|+++.-..
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng~--SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNGM--SDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCCC--ccceeeeccccceeeecCcchhhhhhHhhh
Confidence 3689999999999999998874 4699999999999999999888775 77888776554443211 223566554322
Q ss_pred c-ccCCC-hHHHHHHHHhc-ccCCcEE
Q 020307 242 L-HCWPS-PSNAVAEISRI-LRSGGVF 265 (328)
Q Consensus 242 l-~h~~d-~~~~l~~~~r~-LkpgG~l 265 (328)
. |-+.. ....++++.+. +++|...
T Consensus 145 dtEligeGalps~qhAh~~L~~~nc~~ 171 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLVDNCKT 171 (636)
T ss_pred hhhhhccccchhHHHHHHHhcccCCee
Confidence 1 11111 22345555544 4555443
No 329
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.22 E-value=0.34 Score=43.53 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
++.+|.-||.|. |.....++-- -+.+|+-+|+|.+.+++....+ ..++........++.-.-...|+++..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 456788899886 6666666543 3569999999999888877754 335666666554443333578999977
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-.+---..|.-..+++.+.+|||++++=.-
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 666666788888999999999999886433
No 330
>PRK13699 putative methylase; Provisional
Probab=93.20 E-value=0.24 Score=42.96 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 249 SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 249 ~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
...++++.|+|||||.+++..... ....+..+++++||.+..
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~-----------------------~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWN-----------------------RVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccc-----------------------cHHHHHHHHHHCCCEEee
Confidence 467899999999999887633110 012455677888997654
No 331
>PRK10220 hypothetical protein; Provisional
Probab=93.19 E-value=0.069 Score=39.78 Aligned_cols=33 Identities=18% Similarity=0.571 Sum_probs=26.2
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
.+-.||.|++.....+. ..+.|+.|+|.+...+
T Consensus 2 ~lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 2 SLPHCPKCNSEYTYEDN----------GMYICPECAHEWNDAE 34 (111)
T ss_pred CCCcCCCCCCcceEcCC----------CeEECCcccCcCCccc
Confidence 44579999999877665 4899999999886543
No 332
>PRK11524 putative methyltransferase; Provisional
Probab=93.17 E-value=0.25 Score=44.49 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=42.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.+|..|||-=+|+|..+.+..+.+- +++|+|++++.++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 5789999999999999999888876 999999999999999999754
No 333
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.15 E-value=0.93 Score=41.22 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=61.5
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC------CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 231 (328)
..++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. . +..+..+-... ....+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~--------g--~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL--------G--ADEVLNSLDDSPKDKKAAGLGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh--------C--CCEEEcCCCcCHHHHHHHhcCC
Confidence 45677888888764 77777777764 34799999999888877542 1 11111111110 12345
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+.... ....++++.+.|+++|.++....
T Consensus 232 ~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 232 GFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 6898875321 23468889999999999987643
No 334
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=92.98 E-value=0.054 Score=43.76 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=24.0
Q ss_pred ccccCCCchhhcc-CCCCccccccccCceeeCCCCccccCc
Q 020307 61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 61 l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
+.||.|+++.... .....+.+.......+|++||..|..-
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~ 41 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF 41 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence 4699999976322 222222232333348999999988543
No 335
>PRK13699 putative methylase; Provisional
Probab=92.91 E-value=0.32 Score=42.21 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=41.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.++..|||.=||+|..+....+.+- +++|+|+++...+.+.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence 4788999999999999999888876 999999999999999998865
No 336
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.82 E-value=0.23 Score=42.50 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=35.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 203 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 203 (328)
.++..|||.=||+|..+.+..+.+- +.+|+|+++...+.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 5789999999999999999999876 89999999999998864
No 337
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.78 E-value=1.9 Score=39.40 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=58.6
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC---CC-C-CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL-P-FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~l-p-~~~ 230 (328)
...++.+||-+|+|. |.++..+++.. +.+ ++++|.+++..+.+++. ... .++...-. .+ . ...
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~--------ga~-~~i~~~~~~~~~~~~~~~~ 229 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL--------GAD-FVINSGQDDVQEIRELTSG 229 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--------CCC-EEEcCCcchHHHHHHHhCC
Confidence 345688999998864 56666666663 346 99999999888777542 111 11111000 01 0 112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+|+|+-.. .. ...+....+.|+++|++++...
T Consensus 230 ~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 230 AGADVAIECS-----GN-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEcC
Confidence 3689887432 22 2346777889999999987654
No 338
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=92.74 E-value=0.056 Score=32.17 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=20.6
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
.+.|+.|++.+....+ +.+.|..||+.
T Consensus 8 ~~~C~~C~~~~~~~~d----------G~~yC~~cG~~ 34 (36)
T PF11781_consen 8 NEPCPVCGSRWFYSDD----------GFYYCDRCGHQ 34 (36)
T ss_pred CCcCCCCCCeEeEccC----------CEEEhhhCceE
Confidence 3569999998544333 79999999975
No 339
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.43 E-value=2.7 Score=37.46 Aligned_cols=95 Identities=22% Similarity=0.111 Sum_probs=58.3
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC----CCCCCCCCcc
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~f 233 (328)
.++.+||-+|+|. |.++..+++.. +.+ ++++|.+++..+.+++. + ....+...+. ..+ .....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~----G----a~~~i~~~~~~~~~~~~-~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSF----G----ATALAEPEVLAERQGGL-QNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHc----C----CcEecCchhhHHHHHHH-hCCCCC
Confidence 3678999999875 66667777664 334 89999998888777652 1 1111100010 001 012358
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+|+-. ...+ ..++...+.|+++|++++...
T Consensus 189 d~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEF-----SGAT-AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEEC-----CCCh-HHHHHHHHHhcCCCEEEEecc
Confidence 888743 2223 457888999999999987664
No 340
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=92.37 E-value=0.049 Score=32.79 Aligned_cols=35 Identities=23% Similarity=0.562 Sum_probs=21.8
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+.||.|++.+...... ++ .....++|++|++.+.
T Consensus 2 ~~~CP~C~~~~~v~~~~---~~-~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQ---LG-ANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHH---cC-CCCCEEECCCCCCEEE
Confidence 36799999976543211 00 0113689999998763
No 341
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.17 E-value=0.84 Score=42.23 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=58.0
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeC---CHHHHHHHHHHHHhcCcCCCCCeEEEE---ecCCCCCCCCCc
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVR---ADVCRLPFASGF 232 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~---s~~~~~~a~~~~~~~~~~~~~~i~~~~---~d~~~lp~~~~~ 232 (328)
.++.+||-+|+|. |.++..+++.. +.++++++. ++.-.+.+++. + ...+. .+..+. ...+.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----G------a~~v~~~~~~~~~~-~~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----G------ATYVNSSKTPVAEV-KLVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----C------CEEecCCccchhhh-hhcCC
Confidence 4678999999876 67777777764 348999986 56666666542 1 11211 111110 01245
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|+|+-.- ..+ ..+.+..+.|++||.+++...
T Consensus 239 ~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 239 FDLIIEAT-----GVP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCEEEECc-----CCH-HHHHHHHHHccCCcEEEEEec
Confidence 88877543 223 367888999999999887654
No 342
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=92.04 E-value=0.1 Score=38.82 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=24.9
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
-.||.|++.....+. ..+.|+.|+|.+...+
T Consensus 3 p~CP~C~seytY~dg----------~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 3 PPCPKCNSEYTYHDG----------TQLICPSCLYEWNENE 33 (109)
T ss_pred CcCCcCCCcceEecC----------CeeECccccccccccc
Confidence 469999999877665 4899999999885543
No 343
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=92.03 E-value=0.11 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=23.5
Q ss_pred CcccccCCCchhhc-cCCCCccccccccCceeeCCCCcccc
Q 020307 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+..|+.|++.... ... +.+.|..|+..++
T Consensus 2 ~~~~C~~C~~~~i~~~~~----------~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 2 NLKKCSKCGGNGIVNKED----------DYEVCIFCGSSFP 32 (33)
T ss_pred CceEcCCCCCCeEEEecC----------CeEEcccCCcEee
Confidence 45679999998876 333 5899999998774
No 344
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.89 E-value=0.69 Score=41.71 Aligned_cols=111 Identities=12% Similarity=0.068 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC--------------------CCceEEEEeCCHH--HHHHHHHHHHhc----------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSEN--MLRQCYDFIKQD---------- 208 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~g~D~s~~--~~~~a~~~~~~~---------- 208 (328)
+..+||-||.|-|.=...++... +..+++.+|+.+= .+......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34699999999987554444332 1248999998653 333333322221
Q ss_pred --Cc--CCCCCeEEEEecCCCCCCCC-------CccceEEeccccccC-----CChHHHHHHHHhcccCCcEEEEEEec
Q 020307 209 --NT--ILTSNLALVRADVCRLPFAS-------GFVDAVHAGAALHCW-----PSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 209 --~~--~~~~~i~~~~~d~~~lp~~~-------~~fD~i~~~~vl~h~-----~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.. ...-++.|.+.|+..+..++ ...|+|+..+.++.+ +...++|..+...++||..|+|++.-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 00 11346789999987765322 257899988877433 44568999999999999999998843
No 345
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.88 E-value=1.5 Score=40.69 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=53.9
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~i~ 237 (328)
.++.+||-.|+|. |.++..+++.. +.++++++.+.+....+.+.+ + . ..++. .+...+....+.+|+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~---G----a-~~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRL---G----A-DSFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhC---C----C-cEEEcCCCHHHHHhhcCCCCEEE
Confidence 4678888899875 67777777763 347888887765433222211 1 1 11111 01001100012477776
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
- .+..+ ..+.+..+.|++||+++...
T Consensus 253 d-----~~g~~-~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 D-----TVSAV-HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred E-----CCCCH-HHHHHHHHHhcCCcEEEEeC
Confidence 3 23333 35788899999999988764
No 346
>PTZ00357 methyltransferase; Provisional
Probab=91.87 E-value=1.2 Score=44.49 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=65.4
Q ss_pred CeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcC------CCCCeEEEEecCCCCCCCC--
Q 020307 163 GLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRADVCRLPFAS-- 230 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------~~~~i~~~~~d~~~lp~~~-- 230 (328)
..|+-+|+|-|-+.....+. +-..+++++|-++..+.....+......+ ....+.++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999876555443 44568999999966544444443221111 1345899999998764321
Q ss_pred ---------CccceEEeccccccCCCh---HHHHHHHHhcccC----CcE
Q 020307 231 ---------GFVDAVHAGAALHCWPSP---SNAVAEISRILRS----GGV 264 (328)
Q Consensus 231 ---------~~fD~i~~~~vl~h~~d~---~~~l~~~~r~Lkp----gG~ 264 (328)
+++|+|++ ..|--+.|- .+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36999986 334444443 2568888888886 776
No 347
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.70 E-value=0.36 Score=41.04 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=62.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHHHHh---cCc-----------------------
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGT--YSGVVALDFSENMLRQCYDFIKQ---DNT----------------------- 210 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~~---~~~----------------------- 210 (328)
...+.++.|-.||+|+++--+.-... -..|+|.|+++++++.|++++.- .|+
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 34567999999999998776654421 23799999999999999976531 000
Q ss_pred -------------CCCCCeEEEEecCCCCC-----CCCCccceEEecccc---ccCCC-----h-HHHHHHHHhcccCCc
Q 020307 211 -------------ILTSNLALVRADVCRLP-----FASGFVDAVHAGAAL---HCWPS-----P-SNAVAEISRILRSGG 263 (328)
Q Consensus 211 -------------~~~~~i~~~~~d~~~lp-----~~~~~fD~i~~~~vl---~h~~d-----~-~~~l~~~~r~LkpgG 263 (328)
.......+.+.|+.+.. -.....|+|+..--- -+|.. | ..+|..+..+|..++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 12344667788876621 112336999875332 23322 2 378999999996666
Q ss_pred EEEEEE
Q 020307 264 VFVGTT 269 (328)
Q Consensus 264 ~l~i~~ 269 (328)
++.+++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666633
No 348
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.54 E-value=0.093 Score=36.48 Aligned_cols=37 Identities=22% Similarity=0.548 Sum_probs=25.9
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCccce
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNY 103 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~ 103 (328)
++.||+|+-.+......++ ..-.|++|+-++..+...
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGEL 37 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGEL 37 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchhH
Confidence 3569999998866544322 356899999988766444
No 349
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.49 E-value=2 Score=39.73 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=59.5
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----C-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~ 231 (328)
..++.+||-.|+|. |..+..+++.....+|+++|.++...+.+++. ... .++...-.+. . ....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~--------Ga~-~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF--------GAT-HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc--------CCc-eEEcCCCcCHHHHHHHHhCCC
Confidence 45688999999865 66777777764222599999999888887652 111 1111110110 0 1123
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+- ....+ ..++...+.+++||++++...
T Consensus 245 g~d~vid-----~~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVID-----AVGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEE-----CCCCH-HHHHHHHHHhccCCEEEEECC
Confidence 5888774 33333 357778899999999987653
No 350
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.35 E-value=0.066 Score=40.78 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=29.3
Q ss_pred cCcccccCCCchhhcc--CCCCccccccccCceeeCCCCccccCccc
Q 020307 58 GDLFSCPICYEPLIRK--GPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (328)
..+..||+|..+..-. ......++.-|...-.|.+||..||..+.
T Consensus 37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwter 83 (160)
T COG4306 37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTER 83 (160)
T ss_pred HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHHH
Confidence 3577899998765221 11122344446667889999999987643
No 351
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=0.1 Score=39.35 Aligned_cols=27 Identities=7% Similarity=0.327 Sum_probs=23.6
Q ss_pred cccCceeeCCCCccccCccceeeeecc
Q 020307 83 IYRSGFKCRKCDKTYSSKDNYLDLTVI 109 (328)
Q Consensus 83 ~~~~~~~C~~C~~~~~~~~g~~~~~~~ 109 (328)
+..|.+.|+.||+.|++.+|+++.+-.
T Consensus 94 v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 94 VIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hccceEecCCCCcEeecccCCcccccC
Confidence 456899999999999999999998754
No 352
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=91.30 E-value=0.092 Score=39.91 Aligned_cols=22 Identities=32% Similarity=0.921 Sum_probs=18.6
Q ss_pred ccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
||+|++++.. ..+.|++|+...
T Consensus 1 CPvCg~~l~v-------------t~l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVV-------------TRLKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEE-------------EEEEcCCCCCEE
Confidence 9999999966 589999997654
No 353
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.29 E-value=0.6 Score=42.90 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=38.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh----CC----CceEEEEeCCHHHHHHHHHHHHh
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS----GT----YSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.+....++|+|.|.|.++..+.+. .| ..++.-+|+|++..+.=++.++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 344568999999999988777654 22 56899999999988877776664
No 354
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=91.25 E-value=0.092 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.3
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
.||.||..+.. +.-.|++||+.
T Consensus 1 ~Cp~CG~~~~~-------------~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED-------------DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC-------------cCcchhhhCCc
Confidence 39999988743 35669999864
No 355
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.19 E-value=1.8 Score=40.31 Aligned_cols=96 Identities=27% Similarity=0.235 Sum_probs=59.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~ 231 (328)
..++.+||-.|+|. |.++..+++.. +. +|+++|.+++..+.+++. ... .++..+-.++ ....+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~--------Ga~-~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALAREL--------GAT-ATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHc--------CCc-eEeCCCchhHHHHHHHHhCC
Confidence 45678898899875 66777777764 33 699999999988887652 111 1111110110 01123
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+-.- ..+ ..+....+.|+++|+++....
T Consensus 259 g~d~vid~~-----G~~-~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 259 GVDYAFEMA-----GSV-PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCEEEECC-----CCh-HHHHHHHHHHhcCCEEEEEcc
Confidence 588887432 222 457788899999999887653
No 356
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=91.15 E-value=0.14 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=15.4
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-||.||++....... ....|+.|++.+
T Consensus 5 fC~~CG~~t~~~~~g---------~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGG---------WARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-SSS---------S-EEESSSS-EE
T ss_pred ccCcCCccccCCCCc---------CEeECCCCcCEe
Confidence 399999987665432 478999998753
No 357
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.12 E-value=1 Score=39.55 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=65.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++...+|+|...|.++..|.+++- .|+++|..+ |.+..-. ...++....|-.+..-.....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEe
Confidence 45788999999999999999999876 999999754 3322222 66788888887665434567898888
Q ss_pred ccccccCCChHHHHHHHHhcccCC
Q 020307 239 GAALHCWPSPSNAVAEISRILRSG 262 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~Lkpg 262 (328)
..| ..|.++-..+...|..|
T Consensus 277 DmV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 277 DMV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred ehh----cCcHHHHHHHHHHHHcc
Confidence 664 67887777777777654
No 358
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=91.11 E-value=1 Score=42.66 Aligned_cols=110 Identities=23% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCcCHHHHHH--HHhCCCceEEEEeCCHHHHHHHHHHHHh--cCc-CCCCCeEEEEecCCCCCCC-CCccc
Q 020307 161 QGGLLVDVSCGSGLFSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQ--DNT-ILTSNLALVRADVCRLPFA-SGFVD 234 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l--~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~-~~~~~i~~~~~d~~~lp~~-~~~fD 234 (328)
....+.|+|.|.|.-...+ ........+..||.|..|.....+.... +.. ....++.+.. ..+|.. ...||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCccccee
Confidence 3457888888876533333 3333344799999999999988877654 110 0001111111 123433 34599
Q ss_pred eEEeccccccCCChH---HHHHHH-HhcccCCcEEEEEEeccC
Q 020307 235 AVHAGAALHCWPSPS---NAVAEI-SRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~---~~l~~~-~r~LkpgG~l~i~~~~~~ 273 (328)
+|++.+.++++.++. ...+++ .+..++|+.+++.+....
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999999998775 233333 456688999999887544
No 359
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=0.094 Score=42.39 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=25.1
Q ss_pred ccCcccccCCCchhhccCCCCcc------ccccccCceeeCCCCccc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLT------LGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~ 97 (328)
+.+.-+||.|++++.......+. .-..+...++|++||..|
T Consensus 94 ~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 94 FPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred ccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 34577899999987553322100 011133467899999877
No 360
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=91.05 E-value=0.14 Score=38.76 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=23.4
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
.-.||.||..+.-.+. ....|+.||..|+..
T Consensus 9 KR~Cp~CG~kFYDLnk----------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNK----------DPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccCCC----------CCccCCCCCCccCcc
Confidence 3469999998854332 478899999999655
No 361
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.04 E-value=1 Score=42.70 Aligned_cols=90 Identities=10% Similarity=0.024 Sum_probs=57.7
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+|+-+|+|. |.....+++.. +.+|+.+|.++...+.|+.. ..... +..+. . ...|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~~e~-v--~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----------GYEVM--TMEEA-V--KEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----------CCEEc--cHHHH-H--cCCCEEEE
Confidence 3688999999997 66655555542 34899999999877777642 12221 11111 1 24798885
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.- ..+..+-.+..+.+|+||+++....
T Consensus 264 at-----G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 264 TT-----GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CC-----CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 42 3344333445899999999987663
No 362
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.82 E-value=0.15 Score=33.18 Aligned_cols=26 Identities=23% Similarity=0.686 Sum_probs=21.0
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-.|+.|+.++...+ ..+.|+.|+..|
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCcc
Confidence 46999999986544 489999998876
No 363
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=90.76 E-value=0.15 Score=28.51 Aligned_cols=22 Identities=27% Similarity=0.841 Sum_probs=11.7
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCC
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK 92 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~ 92 (328)
.||.|++++....+. -.++|.+
T Consensus 1 ~CP~C~s~l~~~~~e---------v~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREEGE---------VDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-CCT---------TCEEE--
T ss_pred CcCCCCCEeEcCCCC---------EeEECCC
Confidence 499999999865543 4778875
No 364
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=90.51 E-value=0.15 Score=32.88 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=20.0
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-+.||+|+..-......+..+ ..=.++|++|.+..
T Consensus 4 Wi~CP~CgnKTR~kir~DT~L---kNfPlyCpKCK~Et 38 (55)
T PF14205_consen 4 WILCPICGNKTRLKIREDTVL---KNFPLYCPKCKQET 38 (55)
T ss_pred EEECCCCCCccceeeecCcee---ccccccCCCCCceE
Confidence 357999997532222111111 22378999997765
No 365
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=90.19 E-value=0.21 Score=32.14 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=20.4
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
...-.||.|++.+..... +.+.|..||..+
T Consensus 18 ~~~~fCP~Cg~~~m~~~~----------~r~~C~~Cgyt~ 47 (50)
T PRK00432 18 RKNKFCPRCGSGFMAEHL----------DRWHCGKCGYTE 47 (50)
T ss_pred EccCcCcCCCcchheccC----------CcEECCCcCCEE
Confidence 344469999986333221 589999998654
No 366
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.18 E-value=0.34 Score=46.14 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=77.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD 234 (328)
.++-+|||.=|++|.-+...++..+ -.++++-|.+++.++..+++.+..+. ...+.....|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v--~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV--EDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc--hhhcccccchHHHHHHhccccccccc
Confidence 4567999999999987777776643 34799999999999998888776432 23344455565332 22356799
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|-. .=+..+..+|..+.+.++.||.|.++.-.
T Consensus 186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred eEec----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 9874 33456789999999999999999987643
No 367
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=90.08 E-value=0.27 Score=44.70 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=61.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHHHHhcCcCCCCCeEEEEecCCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-------YDFIKQDNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-------~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
....+|+.|+|-=-|||.++...+..|. -|+|.||+-.+++.. +.++++.+.. ..-+.++.+|+.+.|+.
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDVLTADFSNPPLR 280 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCc-chhhheeeecccCcchh
Confidence 3456899999999999999999888876 999999999988732 4556655421 33467888999887754
Q ss_pred -CCccceEEec
Q 020307 230 -SGFVDAVHAG 239 (328)
Q Consensus 230 -~~~fD~i~~~ 239 (328)
...||.|+|.
T Consensus 281 sn~~fDaIvcD 291 (421)
T KOG2671|consen 281 SNLKFDAIVCD 291 (421)
T ss_pred hcceeeEEEeC
Confidence 4679999983
No 368
>PLN02740 Alcohol dehydrogenase-like
Probab=89.97 E-value=3.2 Score=38.85 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=59.7
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec-----CCC-C-CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PFA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-----~~~-l-p~~ 229 (328)
...++.+||-+|+|. |..+..+++.....+|+++|.+++.++.+++. ... .++... +.+ + ...
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~--------Ga~-~~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM--------GIT-DFINPKDSDKPVHERIREMT 265 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc--------CCc-EEEecccccchHHHHHHHHh
Confidence 345788999999875 66777777764222699999999988888652 111 122111 100 0 011
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
.+.+|+|+-. ...+ ..+....+.+++| |++++...
T Consensus 266 ~~g~dvvid~-----~G~~-~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 266 GGGVDYSFEC-----AGNV-EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCCCCEEEEC-----CCCh-HHHHHHHHhhhcCCCEEEEEcc
Confidence 2258888743 3333 4577778889886 98877553
No 369
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.76 E-value=3 Score=38.00 Aligned_cols=94 Identities=20% Similarity=0.295 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec---CCCCCCCCCccceE
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~lp~~~~~fD~i 236 (328)
++.+||..|+|. |..+..+++......+++++.++...+.+++. + . . .++..+ +..+....+.+|++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g---~-~-~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G---A-D-ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C---C-C-EEEcCCchhhhhhhccCCCccEE
Confidence 678899888875 66777777764222689999988877765542 1 1 1 111111 11121122358998
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.... ....++.+.+.|+++|+++...
T Consensus 236 ld~~g------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASG------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 85432 1235788899999999988764
No 370
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=89.75 E-value=0.21 Score=30.61 Aligned_cols=24 Identities=33% Similarity=0.771 Sum_probs=18.5
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCC
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 94 (328)
-.||.|+.++..... +...|..|+
T Consensus 18 ~~Cp~C~~PL~~~k~----------g~~~Cv~C~ 41 (41)
T PF06677_consen 18 EHCPDCGTPLMRDKD----------GKIYCVSCG 41 (41)
T ss_pred CccCCCCCeeEEecC----------CCEECCCCC
Confidence 459999999987332 578899984
No 371
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.59 E-value=7 Score=33.46 Aligned_cols=104 Identities=20% Similarity=0.198 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
++++||-.|++.|. +...+++.+. +|++++.+++..+...+.... ..++.++.+|+.+.. +
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCCHHHHHHHHHHHH
Confidence 35789999976432 3344445555 999999988776655444332 236788888886532 0
Q ss_pred -CCCccceEEeccccccCC-----------------ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 229 -ASGFVDAVHAGAALHCWP-----------------SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~-----------------d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.-+.+|.++......... -+...++.+.+.++++|.+++....
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 013468777655321110 1123456666777788877776643
No 372
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.57 E-value=0.73 Score=39.67 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=50.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEe-cCC----CCCCCCCcc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRA-DVC----RLPFASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~-d~~----~lp~~~~~f 233 (328)
.++.++||||.|.--.--.+--+-++.+.+|.|+++..++.|+..+..+ ++ ...+.+..- |-. .+--.++.|
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l--~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL--ERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch--hhheeEEeccCcccccccccccccee
Confidence 3566899998875432222222212349999999999999999888764 22 223444332 111 111236789
Q ss_pred ceEEecccccc
Q 020307 234 DAVHAGAALHC 244 (328)
Q Consensus 234 D~i~~~~vl~h 244 (328)
|+++|+--+|.
T Consensus 155 d~tlCNPPFh~ 165 (292)
T COG3129 155 DATLCNPPFHD 165 (292)
T ss_pred eeEecCCCcch
Confidence 99999876653
No 373
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.54 E-value=5 Score=36.33 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=93.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------CCCC
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FASG 231 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------~~~~ 231 (328)
...|+-+|||-- ++...-..+ ..+|+-+|. |+.++.=++.+++.+........++..|+.+-. |...
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 568999999853 333332223 356777775 666666666677655332347899999997422 2344
Q ss_pred ccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcch----hhHHHHH----hhhccCCCCCHHHHH
Q 020307 232 FVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL----TGRVLRE----RILQNYNYLTEEEIE 301 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~l~ 301 (328)
.-=++++-+++.+++.. .++|..|.....||-.++............. ....... .....+......++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 55678888888988754 4789999999999888887764221111110 0000100 011333455689999
Q ss_pred HHHHHCCCeEEEE
Q 020307 302 DLCTSCGLTNYTS 314 (328)
Q Consensus 302 ~ll~~~Gf~~v~~ 314 (328)
.++.+.||.....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999987764
No 374
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=89.53 E-value=0.23 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=21.9
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+.|..||..+..... +.++|+.||+.-.
T Consensus 2 ~Y~C~~Cg~~~~~~~~----------~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIKSK----------DVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecCCC----------CceECCCCCceEE
Confidence 3679999997765422 5899999998753
No 375
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=89.39 E-value=2.9 Score=39.16 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=54.1
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHH-HHHHHHHHHhcCcCCCCCeEEEE-ecCCCCCCCCCccceE
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENM-LRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~i 236 (328)
.++.+||-.|+|. |.++..+++.. +.++++++.+++. .+.+++ .+ . . .++. .+...+.-..+.+|+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~----lG---a-~-~~i~~~~~~~v~~~~~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR----LG---A-D-SFLVTTDSQKMKEAVGTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh----CC---C-c-EEEcCcCHHHHHHhhCCCcEE
Confidence 3678899899875 66777777764 3479999887553 334432 11 1 1 1111 0100000001247877
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+-. ...+ ..+....+.+++||.++....
T Consensus 247 id~-----~G~~-~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 247 IDT-----VSAE-HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEC-----CCcH-HHHHHHHHhhcCCCEEEEEcc
Confidence 743 2223 357788899999999987653
No 376
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=89.13 E-value=0.14 Score=37.06 Aligned_cols=30 Identities=27% Similarity=0.848 Sum_probs=21.6
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 34 ~ky~Cp~Cgk~~vkR~a---------~GIW~C~~C~~~~ 63 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRVA---------TGIWKCKKCGKKF 63 (90)
T ss_dssp S-BEESSSSSSEEEEEE---------TTEEEETTTTEEE
T ss_pred CCCcCCCCCCceeEEee---------eEEeecCCCCCEE
Confidence 45789999986544332 2799999998665
No 377
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=88.96 E-value=0.22 Score=44.35 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCcCHHHH-HHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~-~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..|+|+=.|-|+|+. .+...+ -..|+++|.++..++..++.++.++. ..+..++.+|-.. +-++...|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V--~~r~~i~~gd~R~-~~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNV--MDRCRITEGDNRN-PKPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcch--HHHHHhhhccccc-cCccccchheeec
Confidence 45789999999999998 777776 35899999999999999988876543 3444555566543 3346677777753
Q ss_pred cccccCCChHHHHHHHHhcccCCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGG 263 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG 263 (328)
-+|.-++---.+..+|||.|
T Consensus 270 ----LlPSse~~W~~A~k~Lk~eg 289 (351)
T KOG1227|consen 270 ----LLPSSEQGWPTAIKALKPEG 289 (351)
T ss_pred ----cccccccchHHHHHHhhhcC
Confidence 34555555566777888744
No 378
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=88.76 E-value=0.92 Score=41.88 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=35.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 203 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 203 (328)
.+-..++|+|.|.|++++.+.-.+ +..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 455789999999999999888764 6699999999877777654
No 379
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=88.72 E-value=0.3 Score=28.17 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=18.8
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
+.|..|+........ ..++|+.||+...
T Consensus 1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RIl 28 (32)
T PF03604_consen 1 YICGECGAEVELKPG----------DPIRCPECGHRIL 28 (32)
T ss_dssp EBESSSSSSE-BSTS----------STSSBSSSS-SEE
T ss_pred CCCCcCCCeeEcCCC----------CcEECCcCCCeEE
Confidence 358899987765432 4789999988753
No 380
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=88.62 E-value=0.19 Score=27.44 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=16.7
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
..||.|+..+.. +.-.|++||..
T Consensus 3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDP-------------DAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCc-------------ccccChhhCCC
Confidence 469999985422 46789999864
No 381
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=88.47 E-value=0.44 Score=30.67 Aligned_cols=34 Identities=32% Similarity=0.606 Sum_probs=22.3
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccCccc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (328)
-||.||+-+....... ...+.|+.|+..+.....
T Consensus 2 FCp~Cg~~l~~~~~~~-------~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGKE-------KRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCCC-------CCEEECCcCCCeEECCCc
Confidence 3999998665543210 137889999987755443
No 382
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.31 E-value=1.1 Score=42.07 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
++.+|+-+|+|. |..+...+... +.+|+.+|.+++.++.+...+. ..+.....+...+.-.-..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 456799999985 55555555442 3489999999877665544321 11111111111111011358999965
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-.+.--+.|.-+-++..+.+|||++++-..
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 322111223323466667789998776544
No 383
>PF14353 CpXC: CpXC protein
Probab=88.29 E-value=0.28 Score=38.42 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=22.9
Q ss_pred ccccCCCchhhccCCCCcc-------ccccc---cCceeeCCCCccccCc
Q 020307 61 FSCPICYEPLIRKGPTGLT-------LGAIY---RSGFKCRKCDKTYSSK 100 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~-------~~~~~---~~~~~C~~C~~~~~~~ 100 (328)
+.||.|+..+.......++ ...+- ...+.|++||+.+...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 5799999965332221111 11111 1367899999988543
No 384
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=88.28 E-value=0.19 Score=30.45 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=17.5
Q ss_pred ccccCCCchhhcc-CCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+.||.|++.-... .....+.++-..-.+.|.+|++.+
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 3699999842110 000001122234578899999875
No 385
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.27 E-value=5.4 Score=36.63 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=57.3
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC---C--CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L--PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---l--p~~~~ 231 (328)
..++.+||-.|+|. |.++..+++.. +.+ +++++.+++..+.+++. + . -.++..+-.. + -....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~----G----a-~~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSL----G----A-MQTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc----C----C-ceEecCcccCHHHHHHHhcCC
Confidence 34678999999865 66666677764 334 78999999888776542 1 1 1111111000 0 01123
Q ss_pred ccc-eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVD-AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD-~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+| +|+ +.... ...+.+..+.|++||++++...
T Consensus 228 ~~d~~v~-----d~~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLIL-----ETAGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEE-----ECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 566 444 23333 3467888899999999988754
No 386
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=88.11 E-value=0.25 Score=31.34 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=24.9
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCC--CCccccCccce
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSKDNY 103 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~g~ 103 (328)
.||.||+.......... -+.+...+..|.+ ||+.|.....+
T Consensus 1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~~~ 43 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANLEF 43 (47)
T ss_pred CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEEEE
Confidence 49999996544322111 2233345788988 99998655443
No 387
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=88.10 E-value=0.37 Score=31.40 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=20.8
Q ss_pred ccccCCCchhh-ccCCCCccccccccCceeeCCCCccccC
Q 020307 61 FSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (328)
Q Consensus 61 l~CP~C~~~l~-~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (328)
..||.||+.-. ..... ...-..+.+.|.+|+...+.
T Consensus 2 kPCPfCGg~~~~~~~~~---~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGF---DPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEecc---CCCCCEEEEECCCCCCCccc
Confidence 56999999644 21100 11112345689999887654
No 388
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.06 E-value=1.2 Score=39.51 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=41.8
Q ss_pred HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHH
Q 020307 175 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE 254 (328)
Q Consensus 175 ~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~ 254 (328)
+++.|.+.++..+|+|+|.++..++.|.+. .-+.-...+.+.+ ..+|+|+..--+.. ...++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g~~~~~~~~~~~~----~~~DlvvlavP~~~---~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL---------GIIDEASTDIEAV----EDADLVVLAVPVSA---IEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------TSSSEEESHHHHG----GCCSEEEE-S-HHH---HHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------CCeeeccCCHhHh----cCCCEEEEcCCHHH---HHHHHHH
Confidence 457788888888999999999998888652 1222222221111 24688887543222 2344555
Q ss_pred HHhcccCCcEE
Q 020307 255 ISRILRSGGVF 265 (328)
Q Consensus 255 ~~r~LkpgG~l 265 (328)
+...+++|+.+
T Consensus 65 ~~~~~~~~~iv 75 (258)
T PF02153_consen 65 IAPYLKPGAIV 75 (258)
T ss_dssp HHCGS-TTSEE
T ss_pred hhhhcCCCcEE
Confidence 55555555444
No 389
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=88.04 E-value=0.31 Score=37.56 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=23.1
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
.-.||.||..+.-.+. ....|+.||..|+..
T Consensus 9 Kr~Cp~cg~kFYDLnk----------~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDLNR----------RPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccccCC----------CCccCCCcCCccCcc
Confidence 3469999998854432 478999999988543
No 390
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=88.03 E-value=1.2 Score=39.08 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=59.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHH---h-C-CCceEEEEeCCH--------------------------HHHHHHHHHHHhc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAK---S-G-TYSGVVALDFSE--------------------------NMLRQCYDFIKQD 208 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~---~-~-~~~~v~g~D~s~--------------------------~~~~~a~~~~~~~ 208 (328)
.-.+.|+|+||-.|..+..++. . + +..++++.|.-+ ...+..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3356899999999986654432 2 1 345688888311 1344444555444
Q ss_pred CcCCCCCeEEEEecCCC-CC-CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 209 NTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 209 ~~~~~~~i~~~~~d~~~-lp-~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++. ..++.++.|.+.+ +| .+...+-++....=+. ......|..++..|.|||++++-+++
T Consensus 153 gl~-~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 153 GLL-DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TTS-STTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCC-cccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 431 4689999999843 44 1223333333221111 12357899999999999999996654
No 391
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=87.93 E-value=5.9 Score=36.55 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=59.5
Q ss_pred ccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe----cCCC-C-CCCC
Q 020307 159 SAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-PFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~~~-l-p~~~ 230 (328)
..++.+||-.|+ | .|.++..+++.. +.++++++.+++..+.+++.+. .. .++.. ++.+ + ....
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lG-------a~-~vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLG-------FD-EAFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcC-------CC-EEEECCCcccHHHHHHHHCC
Confidence 457889999997 3 577888888774 4589999999887776653221 11 11111 1100 0 0112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.+|+|+-.- . ...+....+.|++||++++.-
T Consensus 227 ~gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 227 EGIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CCcEEEEECC-----C--HHHHHHHHHHhccCCEEEEEC
Confidence 3588887432 2 246788899999999988754
No 392
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.93 E-value=5.6 Score=37.50 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=59.6
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe---cCCC-CC--CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---DVCR-LP--FASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d~~~-lp--~~~~ 231 (328)
..++.+||-.|+|. |.++..+++...-..++.+|.+++.++.+++. ... .+... ++.. +. ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~--------Ga~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF--------GCE-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc--------CCe-EEecCCcccHHHHHHHHcCCC
Confidence 34677888888875 66666677663222466778888888777762 111 11111 1100 00 1123
Q ss_pred ccceEEecccccc--------CCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHC--------WPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h--------~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+-.-.-.. -.++...+++..+.+++||++++.-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 5888874332110 01223578999999999999988664
No 393
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.85 E-value=7.7 Score=35.68 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=57.9
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCC----C-C-C
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL----P-F-A 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l----p-~-~ 229 (328)
..++.+||-.|+|. |..+..+++.. +.+++++|.+++.++.+++. .....+...+. .++ . + .
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~--------Ga~~~i~~~~~~~~~~~~~~~~~t~ 234 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF--------GADLTLNPKDKSAREVKKLIKAFAK 234 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh--------CCceEecCccccHHHHHHHHHhhcc
Confidence 35688999999966 66777777764 34899999999988877652 11111110000 000 0 0 1
Q ss_pred CCccc----eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVD----AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD----~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+| +|+ +....+ ..++...+.|++||++++...
T Consensus 235 ~~g~d~~~d~v~-----d~~g~~-~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 235 ARGLRSTGWKIF-----ECSGSK-PGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cCCCCCCcCEEE-----ECCCCh-HHHHHHHHHHhcCCeEEEECc
Confidence 12344 333 333333 356778889999999988654
No 394
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.72 E-value=6.2 Score=35.74 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=58.0
Q ss_pred ccCCCeEEEEcCC-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceE
Q 020307 159 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i 236 (328)
..++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. ... .++...-.... ...+.+|++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL--------GAD-EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh--------CCc-EEeccCCcchHHhccCCCCEE
Confidence 4567889999987 466666666663 34899999999887777442 111 11111100000 012358888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.... . ...+.++.+.|+++|.++...
T Consensus 230 i~~~~-----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVV-----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence 75321 1 235788899999999988765
No 395
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=87.69 E-value=0.29 Score=33.68 Aligned_cols=26 Identities=35% Similarity=0.945 Sum_probs=15.4
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+.||.|++++...+ +.++|..|+..|
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~ 27 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDY 27 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred CcCCCCCCccEEeC-----------CEEECccccccc
Confidence 46999999886654 477788887655
No 396
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.64 E-value=6.7 Score=35.58 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=58.9
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----CCC-C-CCC
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR-L-PFA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~-l-p~~ 229 (328)
...++.+||=.|. |.|.++..+++.. +.++++++.+++..+.+++. + .. .++..+ ... . ...
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL----G----FD-VAFNYKTVKSLEETLKKAS 204 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEeccccccHHHHHHHhC
Confidence 3457889998884 3577888888774 44899999998877777542 1 11 111111 110 0 011
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+.+|+|+-. +.. ..+....+.|+++|+++...
T Consensus 205 ~~gvdvv~d~-----~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 205 PDGYDCYFDN-----VGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCCeEEEEEC-----CCH--HHHHHHHHHhCcCcEEEEec
Confidence 2358888742 222 34688899999999998754
No 397
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=87.55 E-value=6 Score=35.84 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=75.2
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccceEEecc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA 240 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~i~~~~ 240 (328)
+++|+=||-|.+..-+...| ...+.++|+++...+.-+.++ + ....+|+.++. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence 68999999999999999998 346899999999888877763 2 67888987765 333 599998753
Q ss_pred ccc---------cCCChHH-H---HHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 241 ALH---------CWPSPSN-A---VAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 241 vl~---------h~~d~~~-~---l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
-.. .+.|+.. + +-++.+.++|.- ++.+.... .... ...-..+.+.+.|++.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~--l~~~------------~~~~~~~~i~~~l~~l 133 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPG--LLSS------------KNGEVFKEILEELEEL 133 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGG--GGTG------------GGHHHHHHHHHHHHHT
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccceE--EEecccce--eecc------------cccccccccccccccc
Confidence 222 2233321 2 333444567743 33343221 0000 0001235788889999
Q ss_pred CCeEEEE
Q 020307 308 GLTNYTS 314 (328)
Q Consensus 308 Gf~~v~~ 314 (328)
|+.+...
T Consensus 134 GY~v~~~ 140 (335)
T PF00145_consen 134 GYNVQWR 140 (335)
T ss_dssp TEEEEEE
T ss_pred ceeehhc
Confidence 9976654
No 398
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.51 E-value=12 Score=32.97 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
.++++|-.|++.|- ++..|++.|. +|+.++.+++.++...+.+.... ..++.++.+|+.+.. +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHH
Confidence 46788988877653 5566666665 89999999887776666554321 346788888986642 1
Q ss_pred CCCccceEEecccc
Q 020307 229 ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 ~~~~fD~i~~~~vl 242 (328)
.-+.+|+++.+...
T Consensus 82 ~~g~iD~lv~nag~ 95 (263)
T PRK08339 82 NIGEPDIFFFSTGG 95 (263)
T ss_pred hhCCCcEEEECCCC
Confidence 11468988876554
No 399
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.47 E-value=6.8 Score=35.96 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=58.5
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----C-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~ 231 (328)
..++.+||-.|+|. |..+..+++......++++|.+++..+.+++. .. ..++..+-..+ . ....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~--------g~-~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY--------GA-TDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc--------CC-ceEecCCCCCHHHHHHHHhCCC
Confidence 45678898888764 66667777764223599999998877776652 11 11111110110 0 1234
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|+|+.... . ...+.++.+.|+++|+++...
T Consensus 235 ~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 235 GVDAVIIAGG-----G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCcEEEECCC-----C-HHHHHHHHHHhhcCCEEEEec
Confidence 5888874322 2 245788999999999988654
No 400
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.29 E-value=11 Score=28.41 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=53.1
Q ss_pred CCcCHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccceEEeccccc
Q 020307 170 CGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALH 243 (328)
Q Consensus 170 cG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~i~~~~vl~ 243 (328)
||.|.++..+++.. ...+|+.+|.+++.++.++.. .+.++.+|..+.. ..-...|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 45556666655431 123899999999998888752 4779999987643 12246777776432
Q ss_pred cCCChH--HHHHHHHhcccCCcEEEEEEe
Q 020307 244 CWPSPS--NAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 244 h~~d~~--~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.. ..+....+.+-|...++....
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 333 234455566777778777663
No 401
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=87.16 E-value=0.19 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=21.3
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
.||.|+..+..... +. .....|++|+-.+....
T Consensus 1 ~CP~C~~~l~~~~~-----~~--~~id~C~~C~G~W~d~~ 33 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-----GD--VEIDVCPSCGGIWFDAG 33 (41)
T ss_pred CcCCCCcccceEEE-----CC--EEEEECCCCCeEEccHH
Confidence 49999997644322 11 24678999987765443
No 402
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.12 E-value=3.1 Score=37.31 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=57.2
Q ss_pred CeEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccceEEec
Q 020307 163 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 163 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~i~~~ 239 (328)
.+|+=+|.|- |.+.+.+.+.++...++|.|.+...++.+... ++..... +.... .....|+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~~--~~~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLAE--AAAEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhhh--hcccCCEEEEe
Confidence 4788888885 56788888888877789999998888777642 2222211 11011 23457999875
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
--+. ....+++++...||+|..+.=
T Consensus 72 vPi~---~~~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 72 VPIE---ATEEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred ccHH---HHHHHHHHhcccCCCCCEEEe
Confidence 4322 235667777777777765543
No 403
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.94 E-value=7.2 Score=36.10 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=54.5
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+||-.|+|. |.++..+++.. +.++++++.+++..+.+.+.+ + . ...+...+...+.-....+|+|+-
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~---G---a-~~~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHL---G---A-DDYLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhc---C---C-cEEecCCChHHHHHhcCCCcEEEE
Confidence 4677888888764 66667777764 347888888776555544322 1 1 111111110011000124777763
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
. +.. ...+....+.|+++|+++....
T Consensus 251 ~-----~g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 251 T-----VPV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred C-----CCc-hHHHHHHHHHhccCCEEEEECC
Confidence 2 222 2357788899999999887653
No 404
>PLN02827 Alcohol dehydrogenase-like
Probab=86.80 E-value=4.6 Score=37.81 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=57.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-----cCCC-CC-CCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-----DVCR-LP-FAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-----d~~~-lp-~~~ 230 (328)
..++.+||-.|+|. |.++..+++......++++|.+++..+.+++. + .. .++.. +... +. ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G----a~-~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G----VT-DFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-EEEcccccchHHHHHHHHHhC
Confidence 45688999999865 66666677664223588999998887777542 1 11 11111 1100 00 112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEE
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT 269 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~ 269 (328)
+.+|+|+-. ...+ ..+....+.+++| |++++.-
T Consensus 262 ~g~d~vid~-----~G~~-~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFEC-----VGDT-GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEEC-----CCCh-HHHHHHHHhhccCCCEEEEEC
Confidence 257877743 2233 3467788889998 9987654
No 405
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.62 E-value=7 Score=35.85 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=64.5
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----CCC--CCCC
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR--LPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~--lp~~ 229 (328)
.+..++.+|.-+|||. |.....-++...-.+++++|+++.-++.|++. .-.+++... +.+ ....
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------GAT~~vn~~~~~~vv~~i~~~T 251 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------GATHFVNPKEVDDVVEAIVELT 251 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------CCceeecchhhhhHHHHHHHhc
Confidence 4567899999999986 66666656554355899999999999999873 333333321 100 0112
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++-.|.+ ++...+.. .++.....+.++|..++.-..
T Consensus 252 ~gG~d~~-----~e~~G~~~-~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 252 DGGADYA-----FECVGNVE-VMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCCCCEE-----EEccCCHH-HHHHHHHHHhcCCeEEEEecC
Confidence 3345555 34444555 678888888889988776543
No 406
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.53 E-value=7.5 Score=34.05 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+++.++...+.+ ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHH
Confidence 45688988865542 4455556665 8999999876555444322 235778888986542 11
Q ss_pred --CCccceEEecccc
Q 020307 230 --SGFVDAVHAGAAL 242 (328)
Q Consensus 230 --~~~fD~i~~~~vl 242 (328)
-+..|+++.+...
T Consensus 76 ~~~g~id~lv~~ag~ 90 (261)
T PRK08265 76 ARFGRVDILVNLACT 90 (261)
T ss_pred HHhCCCCEEEECCCC
Confidence 1467988876543
No 407
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=86.38 E-value=0.35 Score=35.09 Aligned_cols=30 Identities=23% Similarity=0.712 Sum_probs=22.1
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PTZ00255 35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTV 64 (90)
T ss_pred CCccCCCCCCCceeeee---------eEEEEcCCCCCEE
Confidence 56789999875443332 2799999998776
No 408
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=86.33 E-value=0.6 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=25.7
Q ss_pred CcccCcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
......+.|-.|++....... ..++|..||+..
T Consensus 15 r~~~miYiCgdC~~en~lk~~----------D~irCReCG~RI 47 (62)
T KOG3507|consen 15 RTATMIYICGDCGQENTLKRG----------DVIRCRECGYRI 47 (62)
T ss_pred CcccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence 335578999999998766543 589999998865
No 409
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.30 E-value=1.9 Score=38.11 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=43.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 227 (328)
.+...++|+|||.|.++..++... +...++.||-...-.+. ..++..... .+.+.-+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-D~~~~~~~~--~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-DNKIRKDES--EPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-hhhhhccCC--CCceEEEEEEeeccc
Confidence 356699999999999999999876 45689999986544332 333332210 135666677776654
No 410
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=86.10 E-value=6.9 Score=34.40 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=58.1
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
...++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.- . ...+ ....-.. .....+|+
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g-~-----~~~~--~~~~~~~--~~~~~~d~ 162 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALG-P-----ADPV--AADTADE--IGGRGADV 162 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcC-C-----Cccc--cccchhh--hcCCCCCE
Confidence 345678888888865 66666666663 336 999999988877666531 0 0011 1000000 12346898
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+.... ....+.+..+.|+++|.++...
T Consensus 163 vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 885321 1335788899999999988654
No 411
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.06 E-value=1.2 Score=41.72 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCCCC--CCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC
Q 020307 213 TSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT 274 (328)
Q Consensus 213 ~~~i~~~~~d~~~lp--~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~ 274 (328)
..++.++.+++.+.- .+++++|.++.....+++++. ...++++.+.++|||+++.-.....+
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 578999999986532 357899999999999999754 47899999999999999998866543
No 412
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.00 E-value=7.5 Score=35.22 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=58.9
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCc
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF 232 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~ 232 (328)
..++.+||.+|+|. |..+..+++.. +.+ ++.++.+++..+.+++. ... .++..+-... ....+.
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL--------GAT-ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh--------CCe-EEecCCCCCHHHHHHhcCCC
Confidence 45678999998653 56666666664 335 88999998887776442 111 1221111110 012356
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|+++.... ....+.++.+.|+++|+++....
T Consensus 227 vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 227 FDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 899985421 13567888999999999887653
No 413
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=85.93 E-value=1.8 Score=38.82 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=44.6
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
.+.||+|+.....-|+-.|. +.++++|+|+|++.+... ...+-.+.... -.+.+.++++++||
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf---mvdLrKEq~~~---------F~~kv~eLA~~aG~ 282 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF---MVDLRKEQLQE---------FVKKVKELAKAAGF 282 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh---heeCCHHHHHH---------HHHHHHHHHHHCCC
Confidence 46799999887766665554 777899999999987421 11111111111 13578999999999
Q ss_pred eEEE
Q 020307 310 TNYT 313 (328)
Q Consensus 310 ~~v~ 313 (328)
+...
T Consensus 283 ~p~~ 286 (289)
T PF14740_consen 283 KPVT 286 (289)
T ss_pred cccc
Confidence 8764
No 414
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=85.84 E-value=0.34 Score=35.16 Aligned_cols=30 Identities=27% Similarity=0.881 Sum_probs=21.9
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 63 (91)
T TIGR00280 34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKF 63 (91)
T ss_pred cCccCCCCCCCceEEEe---------eEEEEcCCCCCEE
Confidence 56789999875433332 2799999998776
No 415
>PRK05854 short chain dehydrogenase; Provisional
Probab=85.81 E-value=15 Score=33.34 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
.++++|-.|++.|- .+..|++.+. +|+.++.+.+..+.+.+.+..... ..++.++.+|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVP--DAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEEecCCCHHHHHHHHHHHH
Confidence 46788988877653 4555666665 899999888777666665543211 246788899986642
Q ss_pred CCCCccceEEecccc
Q 020307 228 FASGFVDAVHAGAAL 242 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl 242 (328)
-..+..|+++.+..+
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 112568999987654
No 416
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.76 E-value=11 Score=34.55 Aligned_cols=76 Identities=25% Similarity=0.253 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-C--------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F-------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~-------- 228 (328)
++++||-.|++.|. ++..|++.+. +|+.++.+++.++...+.+... ..++.++.+|+.+.. .
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~----g~~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAA----GGEALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 45688888865542 3445556665 8999999988777666655543 346778888986532 0
Q ss_pred -CCCccceEEecccc
Q 020307 229 -ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 -~~~~fD~i~~~~vl 242 (328)
.-+.+|+++.+...
T Consensus 81 ~~~g~iD~lInnAg~ 95 (334)
T PRK07109 81 EELGPIDTWVNNAMV 95 (334)
T ss_pred HHCCCCCEEEECCCc
Confidence 12468999876554
No 417
>PRK07806 short chain dehydrogenase; Provisional
Probab=85.68 E-value=15 Score=31.61 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCcC--H-HHHHHHHhCCCceEEEEeCCH-HHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
+++++|-.|+..| . +...|++.+. +|++++.+. ...+...+.+... ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 4568998986443 2 3344445554 888887653 2333333333322 335778888886532 00
Q ss_pred ---CCccceEEeccccccCC-------------ChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 ---SGFVDAVHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-+.+|+++.+....... -+..+++.+.+.++.+|.+++..
T Consensus 79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 79 REEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 13578887654332110 12356777777777677766554
No 418
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.58 E-value=12 Score=34.47 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=81.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CCccceEEe
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHA 238 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~i~~ 238 (328)
..+++|+=||-|.+..-+...+ ..-+.++|+++..++.-+.+. +...+...|+..+... ...+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEe
Confidence 3589999999999999998887 446899999999888777653 3355666777554321 117899997
Q ss_pred ccccccC---------CChH----HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 239 GAALHCW---------PSPS----NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~---------~d~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
..-...+ .|+. -.+.++...++| .+++.+.... + . .+ ..-+.+.+.+.|+
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g-----l-~--------~~-~~~~~~~i~~~L~ 136 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG-----L-L--------SS-KGQTFDEIKKELE 136 (328)
T ss_pred CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch-----H-H--------hc-CchHHHHHHHHHH
Confidence 5433332 3443 234566666778 5555553221 1 1 11 3346788999999
Q ss_pred HCCCe
Q 020307 306 SCGLT 310 (328)
Q Consensus 306 ~~Gf~ 310 (328)
+.||.
T Consensus 137 ~~GY~ 141 (328)
T COG0270 137 ELGYG 141 (328)
T ss_pred HcCCc
Confidence 99997
No 419
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.49 E-value=18 Score=33.18 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=58.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE--EecCC-CC-C-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALV--RADVC-RL-P-FASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~--~~d~~-~l-p-~~~~ 231 (328)
..++.+||-.|+|. |..+..+++.. +. .+++++.+++..+.+++. + ....+. ..++. .+ . ...+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~----g----a~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEEL----G----ATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh----C----CCEEECCCccCHHHHHHHHhCCC
Confidence 34678888888653 55666666664 34 789999988887777542 1 111110 01110 00 0 1123
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.+|+|+-... . ...++.+.+.|+++|+++.....
T Consensus 241 ~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 241 GVDVSFDCAG-----V-QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred CCCEEEECCC-----C-HHHHHHHHHhccCCCEEEEEccC
Confidence 4888885332 1 23578889999999998876543
No 420
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.43 E-value=0.89 Score=37.90 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=57.5
Q ss_pred eEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCcC-------CCCCeEEEEecCCCCC
Q 020307 164 LLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTI-------LTSNLALVRADVCRLP 227 (328)
Q Consensus 164 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~-------~~~~i~~~~~d~~~lp 227 (328)
+|--||+|+ | .++..++..|. +|+.+|.+++.++.+++++.. .+.. ...++. ...|++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 366788876 4 24555566665 999999999999998877654 1100 011233 23344332
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
. ..|+|+-.- .|.++-...+++++.+.++|+..|...+...
T Consensus 77 --~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 --V-DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --C-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --h-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 1 456665322 2222223578999999999999888877543
No 421
>PRK11524 putative methyltransferase; Provisional
Probab=85.41 E-value=0.64 Score=41.81 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=36.7
Q ss_pred CeEEEEecCCCC--CCCCCccceEEec--ccc--c------cC------CChHHHHHHHHhcccCCcEEEEEE
Q 020307 215 NLALVRADVCRL--PFASGFVDAVHAG--AAL--H------CW------PSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 215 ~i~~~~~d~~~l--p~~~~~fD~i~~~--~vl--~------h~------~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+..++++|..+. .+++++||+|++. +-+ . .+ .-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 446777887553 3557789999984 111 0 00 001468899999999999999854
No 422
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=85.40 E-value=0.46 Score=28.95 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=19.5
Q ss_pred cccCCCchhhcc-CCCCccccccccCceeeCCCCccc
Q 020307 62 SCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 62 ~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.||.|+..-... ....-+.++-+.-.+.|.+|++.+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 699998842110 000001122233578999999876
No 423
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=85.37 E-value=0.47 Score=38.19 Aligned_cols=40 Identities=25% Similarity=0.510 Sum_probs=24.7
Q ss_pred CcccccCCCchhhccCCCCc------cccccccCceeeCCCCcccc
Q 020307 59 DLFSCPICYEPLIRKGPTGL------TLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~------~~~~~~~~~~~C~~C~~~~~ 98 (328)
..-+|+.|++.+.......+ .....+...++|+.||..|-
T Consensus 90 ~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW 135 (147)
T PF01927_consen 90 IFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW 135 (147)
T ss_pred CCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence 35789999997754332211 01111334789999998873
No 424
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.13 E-value=12 Score=34.21 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=58.9
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----------CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----------VCR 225 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----------~~~ 225 (328)
...++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++. + .. .++..+ +..
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~----g---~~--~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL----G---AT--HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc----C---Cc--EEeccccccchhHHHHHHH
Confidence 345678888888765 66777777764 335 89998888777666542 1 11 111111 111
Q ss_pred CCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 226 lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
. .....+|+|+-... ....+.+..+.|+++|+++...
T Consensus 229 ~-~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 229 L-LGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred H-hCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 22345899985432 1235788899999999988754
No 425
>PRK09072 short chain dehydrogenase; Provisional
Probab=85.09 E-value=12 Score=32.67 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
++.++|-.|++.|- ++..++++|. +|++++.+++.++...+.+.. ..++.++.+|+.+..-
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY-----PGRHRWVVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 35688888876542 4555666665 899999998877666554421 4478888889866420
Q ss_pred CCCccceEEecccccc
Q 020307 229 ASGFVDAVHAGAALHC 244 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h 244 (328)
..+..|+++......+
T Consensus 77 ~~~~id~lv~~ag~~~ 92 (263)
T PRK09072 77 EMGGINVLINNAGVNH 92 (263)
T ss_pred hcCCCCEEEECCCCCC
Confidence 0246799998765543
No 426
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=84.95 E-value=0.55 Score=38.94 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=21.6
Q ss_pred CcccccCCCchhh-ccCCCCccccccccCceeeCCCCccccC
Q 020307 59 DLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (328)
Q Consensus 59 ~~l~CP~C~~~l~-~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (328)
-.+.||.|++.-. ...-. ....+-.++|.+||+.++.
T Consensus 5 iy~~Cp~Cg~eev~hEVik----~~g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 5 IYIECPSCGSEEVSHEVIK----ERGREPLVRCEECGTVHPA 42 (201)
T ss_pred EEEECCCCCcchhhHHHHH----hcCCceEEEccCCCcEeec
Confidence 3578999994211 10000 0011248999999999954
No 427
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.87 E-value=10 Score=34.20 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=58.5
Q ss_pred ccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----CCCCC
Q 020307 159 SAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~ 231 (328)
..++.+||-.|. |.|.++..+++.. +.++++++.+++..+.+++. + .. .++...-..+ ....+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~----G----a~-~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL----G----FD-AVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEeCCCccHHHHHHHHCCC
Confidence 456789988884 3477777777764 45899999988877777652 1 11 1111111110 01124
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|+|+-.- . ...+.+..+.|+++|+++...
T Consensus 211 gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 211 GIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence 588887432 2 245788999999999988653
No 428
>PRK08324 short chain dehydrogenase; Validated
Probab=84.87 E-value=10 Score=38.62 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCcC--H-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
++++||-.|++.| . +...+++.|. +|+.+|.++..++.+.+.+.. ..++.++.+|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678998886443 2 3444555565 899999998877666554432 236778888886532 11
Q ss_pred --CCccceEEeccccccCCC-------------------hHHHHHHHHhcccC---CcEEEEEEe
Q 020307 230 --SGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRS---GGVFVGTTF 270 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h~~d-------------------~~~~l~~~~r~Lkp---gG~l~i~~~ 270 (328)
.+.+|+|+.+..+-.... +..+++.+.+.+++ +|.+++...
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 246899987765432211 23456666777766 677766553
No 429
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=84.86 E-value=0.38 Score=34.86 Aligned_cols=30 Identities=27% Similarity=0.800 Sum_probs=21.9
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PRK03976 35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKF 64 (90)
T ss_pred cCccCCCCCCCceEEEE---------EEEEEcCCCCCEE
Confidence 46789999875444332 2799999998776
No 430
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=84.74 E-value=3.6 Score=38.33 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=78.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH-------hcCcCCCCCeEEEEecCCCCCC-
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVRADVCRLPF- 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~~~~~~~i~~~~~d~~~lp~- 228 (328)
+...++....|+|.|.|.....++..+....-+|+++.....+.+..+.. ..|- ....+..+.+++....+
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGSFLDPKRV 266 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeecccccCCHHHH
Confidence 66778899999999999999998887655567888887665555543321 1221 03356677777754321
Q ss_pred --CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 229 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 229 --~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
-....++|+++++..- ++...-+.++..-+++|-+++-..+...
T Consensus 267 ~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 2345788888877542 2223346688999999999998887654
No 431
>PRK12939 short chain dehydrogenase; Provisional
Probab=84.69 E-value=8.2 Score=33.22 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCcCHHHHHH----HHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGLFSRKF----AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l----~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
+++++|=.|++ |..+..+ .+.+. ++++++.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAA----GGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46788877754 4444444 44555 8999998887666655554432 346888899986532 11
Q ss_pred ---CCccceEEecccc
Q 020307 230 ---SGFVDAVHAGAAL 242 (328)
Q Consensus 230 ---~~~fD~i~~~~vl 242 (328)
-+.+|+|+.....
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1468998876543
No 432
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.59 E-value=12 Score=35.10 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=54.6
Q ss_pred CeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----------C----
Q 020307 163 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----------L---- 226 (328)
Q Consensus 163 ~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----------l---- 226 (328)
.+|--+|=|. |. ++..++++|. +|+|+|+++..++.... ....+..-+... +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~----------G~~~i~e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNR----------GESYIEEPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhC----------CcceeecCcHHHHHHHHHhcCCceEec
Confidence 6888888876 54 4556667766 99999999988876542 122222222211 0
Q ss_pred -CCCCCccceEEec--ccc--ccCCCh---HHHHHHHHhcccCCcEEEEEE
Q 020307 227 -PFASGFVDAVHAG--AAL--HCWPSP---SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 227 -p~~~~~fD~i~~~--~vl--~h~~d~---~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+..-...|+++.. --+ ++-+|. ....+.+.++||+|-.+++..
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlES 128 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILES 128 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEec
Confidence 0001134555432 111 233343 467889999999977666644
No 433
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=84.53 E-value=0.47 Score=28.00 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=18.7
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
-||.|+.-|....+.. ....|++|+..+++.
T Consensus 3 FCp~C~nlL~p~~~~~--------~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 3 FCPECGNLLYPKEDKE--------KRVACRTCGYEEPIS 33 (35)
T ss_dssp BETTTTSBEEEEEETT--------TTEEESSSS-EEE-S
T ss_pred eCCCCCccceEcCCCc--------cCcCCCCCCCccCCC
Confidence 4999998765443221 122899998777543
No 434
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.25 E-value=11 Score=34.40 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=59.3
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC----CCCCCCCCc
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGF 232 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~ 232 (328)
...++.+||..|+|. |..+..+++.. +.+++++..+++..+.+++.- . ..-+.....++ ..+ .....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g-~-----~~v~~~~~~~~~~~l~~~-~~~~~ 227 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG-A-----DDTINVGDEDVAARLREL-TDGEG 227 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC-C-----CEEecCcccCHHHHHHHH-hCCCC
Confidence 345678999998764 66777777763 458999988888777765421 0 00011111111 011 12345
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+|+++.... ....+.++.+.|+++|.++...
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 899986421 1345788899999999988654
No 435
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=84.23 E-value=0.77 Score=30.70 Aligned_cols=35 Identities=23% Similarity=0.550 Sum_probs=19.5
Q ss_pred CcccccCCCchhhccCCC-CccccccccCceeeCCCCc
Q 020307 59 DLFSCPICYEPLIRKGPT-GLTLGAIYRSGFKCRKCDK 95 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~ 95 (328)
++..||.||++-...... ....+.. -.+.|..||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 467799998754432221 0000000 3578999987
No 436
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.03 E-value=11 Score=34.40 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=57.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC------CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 231 (328)
..++.+||..|+|. |..+..+++......+++++.++...+.+++. . ...++...-..+ -...+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~--------g-~~~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA--------G-ATDIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh--------C-CcEEEcCCcchHHHHHHHHcCCC
Confidence 34678888877653 66667777764223788888887776666542 1 111111110000 01235
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|+++.... ....+.+..+.|+++|+++...
T Consensus 236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6898885321 1246888899999999988654
No 437
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.97 E-value=12 Score=33.53 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHH-HHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~-~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
+++++|-.|++.|. ++..+++.+. +|+.++.+.. ..+...+.+... ..++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE----GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHH
Confidence 46789999976542 4455555665 8888877642 233333333322 346778889986532 11
Q ss_pred ---CCccceEEeccccccC----CC----------------hHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 ---SGFVDAVHAGAALHCW----PS----------------PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~----~d----------------~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-+.+|+|+.+....+. .+ +..+++.+.+.++++|.++....
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 1367988866543221 11 12345666677777787766553
No 438
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=83.75 E-value=0.58 Score=37.19 Aligned_cols=44 Identities=16% Similarity=0.372 Sum_probs=27.8
Q ss_pred ccccCCCchhhccCCCC-ccccccccCceeeCCCCccccCcccee
Q 020307 61 FSCPICYEPLIRKGPTG-LTLGAIYRSGFKCRKCDKTYSSKDNYL 104 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~-~~~~~~~~~~~~C~~C~~~~~~~~g~~ 104 (328)
+.||.|++.-....+.- ...+......-.|.+||..|..-+-..
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~E 45 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERAE 45 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhheee
Confidence 46999999754433221 223334445678999999996655443
No 439
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.68 E-value=2.4 Score=39.78 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=38.2
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 206 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 206 (328)
+.|...++.+||-|.+|....+..|.. +| .+|++||+|+......+-+..
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHH
Confidence 557888999999999886666655544 43 499999999998887765543
No 440
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.65 E-value=14 Score=33.97 Aligned_cols=93 Identities=27% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------CC
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FA 229 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------~~ 229 (328)
++.+||-.|+|. |..+..+++.. +. ++++++.+++..+.+++. + .. .++..+-...+ ..
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~----g---~~--~vi~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREF----G---AD--ATIDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc----C---CC--eEEcCcccccHHHHHHHHHHhC
Confidence 677888888764 55666677764 44 799999888776665431 1 11 11111100000 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+|+|+-... . ...+.+..+.|+++|+++...
T Consensus 247 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 247 GRGADVVIEASG-----H-PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCcEEEECCC-----C-hHHHHHHHHHhccCCEEEEEc
Confidence 245898884321 1 345778889999999998764
No 441
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.39 E-value=0.58 Score=34.64 Aligned_cols=26 Identities=35% Similarity=0.843 Sum_probs=20.4
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-+..||.|+..+.. ..++|++|+..-
T Consensus 5 ~~~~cPvcg~~~iV-------------TeL~c~~~etTV 30 (122)
T COG3877 5 VINRCPVCGRKLIV-------------TELKCSNCETTV 30 (122)
T ss_pred CCCCCCccccccee-------------EEEecCCCCceE
Confidence 35679999998865 579999997643
No 442
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.26 E-value=16 Score=32.98 Aligned_cols=92 Identities=18% Similarity=0.096 Sum_probs=56.3
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+..++.+||-.|+|. |..+..+++.. +.+++.++.+++..+.+++. . +.... +.... ....+|++
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~--------g--~~~~~-~~~~~--~~~~vD~v 229 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAREL--------G--ADWAG-DSDDL--PPEPLDAA 229 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh--------C--CcEEe-ccCcc--CCCcccEE
Confidence 345677888888764 44555555553 45899999888777666431 1 11111 11111 23458887
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.... . ...+.++.+.|+++|+++...
T Consensus 230 i~~~~-----~-~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 230 IIFAP-----V-GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEcCC-----c-HHHHHHHHHHhhcCCEEEEEc
Confidence 74321 1 246889999999999998754
No 443
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=83.07 E-value=14 Score=34.32 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=58.7
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----CCC-C-CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR-L-PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~-l-p~~~~ 231 (328)
..++.+||-.|+|. |.++..+++.....+|+++|.+++..+.+++. .....+...+ +.. + ....+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~--------Ga~~~i~~~~~~~~~~~~v~~~~~~ 254 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL--------GATDCVNPNDYDKPIQEVIVEITDG 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------CCCeEEcccccchhHHHHHHHHhCC
Confidence 45688999999875 66777777764223799999999988887652 1111111010 000 0 01122
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
.+|+|+-. ...+ ..+.+..+.++++ |++++...
T Consensus 255 g~d~vid~-----~G~~-~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 255 GVDYSFEC-----IGNV-NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCEEEEC-----CCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence 57877643 3333 3577788899886 98877654
No 444
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=83.05 E-value=1.1 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.605 Sum_probs=18.9
Q ss_pred cccccCCCchh-hccCCCCccccccccCceeeCCCC
Q 020307 60 LFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCD 94 (328)
Q Consensus 60 ~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~ 94 (328)
...||.|++.. ....+.+ .-..+.++|..|+
T Consensus 5 ~v~CP~C~s~~~v~k~G~~----~~G~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKS----PSGHQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCCC----CCCCEeEecCcCC
Confidence 35799999976 3322221 1223678999884
No 445
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=82.94 E-value=14 Score=33.20 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=57.2
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...++.+||-.|+|. |..+..+++.. +.++++++.+++..+.+++. + . ... .+.... .....+|++
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~----g---~-~~~---~~~~~~-~~~~~~d~v 218 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRL----G---V-ETV---LPDEAE-SEGGGFDVV 218 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc----C---C-cEE---eCcccc-ccCCCCCEE
Confidence 345678898888653 44555555553 34799999998888877752 1 1 111 111111 234568988
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+-.. .. ...+..+.+.|+++|.++...
T Consensus 219 id~~-----g~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 219 VEAT-----GS-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EECC-----CC-hHHHHHHHHHhhcCCEEEEEc
Confidence 8542 11 345778888999999998743
No 446
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=82.88 E-value=8.8 Score=34.96 Aligned_cols=125 Identities=10% Similarity=0.121 Sum_probs=63.9
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~i~ 237 (328)
.++.+|+-+|+|. |.............+++.+|.+++..+...+.+ . . ..... +..+. -...|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-------g-~-~~~~~~~~~~~---l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-------G-G-NAVPLDELLEL---LNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-------C-C-eEEeHHHHHHH---HhcCCEEE
Confidence 4688999999976 544333333211347999999987553333321 1 1 22221 22111 13579999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
..-.-.+. ...+..+.+..+.++.+++ +...+....+.... ......++.++|+.+.++
T Consensus 244 ~at~~~~~---~~~~~~~~~~~~~~~~~vi-DlavPrdi~~~v~~------l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 244 SATGAPHY---AKIVERAMKKRSGKPRLIV-DLAVPRDIEPEVGE------LEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred ECCCCCch---HHHHHHHHhhCCCCCeEEE-EeCCCCCCchhhcc------CCCcEEEEHHHhHHHHHH
Confidence 87654432 3334444333332445444 44433223322111 134567888888887764
No 447
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=82.75 E-value=0.59 Score=30.81 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=18.1
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (328)
..|.||.||...+..-..- .-....++|++||.
T Consensus 26 v~F~CPnCGe~~I~Rc~~C----Rk~g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKC----RKLGNPYRCPKCGF 58 (61)
T ss_pred eEeeCCCCCceeeehhhhH----HHcCCceECCCcCc
Confidence 4678999986443211100 00114788888874
No 448
>PRK08267 short chain dehydrogenase; Provisional
Probab=82.74 E-value=13 Score=32.26 Aligned_cols=73 Identities=23% Similarity=0.185 Sum_probs=47.4
Q ss_pred CeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC-----
Q 020307 163 GLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----- 229 (328)
Q Consensus 163 ~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 229 (328)
+++|-.|++.|- ++..+++.+. +|+.++.+++.++...+.+. ..++.++.+|+.+.. +.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 367888866432 4455556665 89999998877666554332 236888899986632 11
Q ss_pred -CCccceEEeccccc
Q 020307 230 -SGFVDAVHAGAALH 243 (328)
Q Consensus 230 -~~~fD~i~~~~vl~ 243 (328)
.+.+|+|+.+....
T Consensus 74 ~~~~id~vi~~ag~~ 88 (260)
T PRK08267 74 TGGRLDVLFNNAGIL 88 (260)
T ss_pred cCCCCCEEEECCCCC
Confidence 35689999776543
No 449
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.72 E-value=11 Score=36.93 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=62.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHH----HhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~----~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 230 (328)
-.+++||--|.| |.++..+- +.+ ..+++-+|.++..+......+...-. ..++.++.+|..+.. +.+
T Consensus 248 ~~gK~vLVTGag-GSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~--~~~~~~~igdVrD~~~~~~~~~~ 323 (588)
T COG1086 248 LTGKTVLVTGGG-GSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFP--ELKLRFYIGDVRDRDRVERAMEG 323 (588)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCC--CcceEEEecccccHHHHHHHHhc
Confidence 467888888854 66555554 444 35899999999998888887765321 467889999987643 456
Q ss_pred CccceEEeccccccCC
Q 020307 231 GFVDAVHAGAALHCWP 246 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~ 246 (328)
-+.|+|+....+-|+|
T Consensus 324 ~kvd~VfHAAA~KHVP 339 (588)
T COG1086 324 HKVDIVFHAAALKHVP 339 (588)
T ss_pred CCCceEEEhhhhccCc
Confidence 6799999999999997
No 450
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=82.68 E-value=0.67 Score=29.49 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=22.8
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
+..+.|-.|+..+..... ...++|+.||+.-.
T Consensus 4 ~~~Y~C~~Cg~~~~~~~~---------~~~irCp~Cg~rIl 35 (49)
T COG1996 4 MMEYKCARCGREVELDQE---------TRGIRCPYCGSRIL 35 (49)
T ss_pred eEEEEhhhcCCeeehhhc---------cCceeCCCCCcEEE
Confidence 456889999998742211 15899999988763
No 451
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=82.52 E-value=15 Score=34.07 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=58.4
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----CCC-C-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR-L-PFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~-l-p~~~ 230 (328)
..++.+||-.|+|. |.++..+++.. +. .++++|.+++.++.+++. .....+...+ +.. + ....
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~l--------Ga~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKF--------GATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHc--------CCCEEEcccccchHHHHHHHHHhC
Confidence 45688999998764 66667777764 34 699999999988877542 1111111111 100 0 0112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
+.+|+|+-. +..+ ..+....+.|+++ |+++....
T Consensus 255 ~g~d~vid~-----~g~~-~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 255 GGVDYTFEC-----IGNV-KVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCcEEEEC-----CCCh-HHHHHHHHhhccCCCeEEEEcc
Confidence 358888743 2222 4577888899987 98887653
No 452
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=82.46 E-value=13 Score=25.40 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=41.2
Q ss_pred CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCcEEEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAA 325 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~~~~~~a 325 (328)
|-|.-.+++..+-|++|+.+.+..-+. -+..++..+++..|++.+.....+..+.+.-
T Consensus 10 P~Pvl~~kkal~~l~~G~~l~V~~d~~----------------------~a~~di~~~~~~~G~~~~~~~~~~~~~~~~I 67 (69)
T cd03420 10 PGPILKLKKEIDKLQDGEQLEVKASDP----------------------GFARDAQAWCKSTGNTLISLETEKGKVKAVI 67 (69)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEECCc----------------------cHHHHHHHHHHHcCCEEEEEEecCCEEEEEE
Confidence 445556788888899999877766332 2457899999999999987555444444433
Q ss_pred e
Q 020307 326 Q 326 (328)
Q Consensus 326 ~ 326 (328)
+
T Consensus 68 ~ 68 (69)
T cd03420 68 E 68 (69)
T ss_pred E
Confidence 3
No 453
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=82.45 E-value=1.3 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=18.0
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (328)
-.||.|++.-...- . ..-..+.+.|.+|+.
T Consensus 4 ~pCP~CGG~DrFr~-~----d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 4 GPCPNCGGSDRFRF-D----DKDGRGTWFCSVCGA 33 (37)
T ss_pred cCCCCCCCcccccc-c----cCCCCcCEEeCCCCC
Confidence 35999998432211 0 011237899999964
No 454
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.08 E-value=7 Score=40.02 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCc-C------CCCCeEEEEecCC
Q 020307 161 QGGLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNT-I------LTSNLALVRADVC 224 (328)
Q Consensus 161 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~-~------~~~~i~~~~~d~~ 224 (328)
+-.+|--||+|+ | .++..++..|. +|+.+|.+++.++.+++++.. .+. . ...++... .|..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 388 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYA 388 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH
Confidence 345799999997 3 35555666665 999999999999888766542 110 0 00122211 1221
Q ss_pred CCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 225 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 225 ~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
. -...|+|+-. +.|.+.-...+++++.++++|+.+|...+..
T Consensus 389 ~----~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 G----FDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred H----hcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 1346777743 4455444568999999999999888776644
No 455
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.08 E-value=20 Score=30.81 Aligned_cols=75 Identities=27% Similarity=0.287 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCcC--H-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-C--------
Q 020307 161 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F-------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~-------- 228 (328)
+++++|-.|+..| . ++..|++++. +|++++.++...+.....+.. ..++.++.+|+.+.. +
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA-----GGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3568888886543 2 4455555665 899999998776665554432 235778888886532 0
Q ss_pred -CCCccceEEecccc
Q 020307 229 -ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 -~~~~fD~i~~~~vl 242 (328)
..+.+|+|+.....
T Consensus 77 ~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 77 ERFGSVDILVNNAGT 91 (251)
T ss_pred HHhCCCCEEEECCCC
Confidence 11357999887654
No 456
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=82.03 E-value=0.83 Score=36.32 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=27.0
Q ss_pred ccccCCCchhhccCCCC-ccccccccCceeeCCCCccccCccce
Q 020307 61 FSCPICYEPLIRKGPTG-LTLGAIYRSGFKCRKCDKTYSSKDNY 103 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~-~~~~~~~~~~~~C~~C~~~~~~~~g~ 103 (328)
+.||.|+..-....+.- ...+......-.|.+|+..|...+-+
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErv 44 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERA 44 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeec
Confidence 46999999654433221 12333344567899999999665544
No 457
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=81.95 E-value=0.7 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=19.8
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (328)
.++|+.|+..+....... ......|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~~~------~~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQKIS------DDPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEecC------CCCCCCCCCCCC
Confidence 478999999664432110 025788999987
No 458
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.85 E-value=16 Score=32.01 Aligned_cols=74 Identities=28% Similarity=0.345 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCcC--H-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+++++|-.|.+.| . +...++..+. +|+.++.+++.++...+.+... ..++.++..|+.+.. +
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQA----GPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHH
Confidence 4678888885433 1 3444555554 8999999887766554444432 235677888886532 1
Q ss_pred -CCCccceEEecc
Q 020307 229 -ASGFVDAVHAGA 240 (328)
Q Consensus 229 -~~~~fD~i~~~~ 240 (328)
..+.+|+++.+.
T Consensus 82 ~~~~~iD~vi~~a 94 (264)
T PRK07576 82 DEFGPIDVLVSGA 94 (264)
T ss_pred HHcCCCCEEEECC
Confidence 013579998654
No 459
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=81.56 E-value=1.2 Score=23.87 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=6.1
Q ss_pred CceeeCCCC
Q 020307 86 SGFKCRKCD 94 (328)
Q Consensus 86 ~~~~C~~C~ 94 (328)
..+.|++||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 366777776
No 460
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=81.52 E-value=13 Score=34.33 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=57.6
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cC-C----CC-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-C----RL-PFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~-~----~l-p~~~ 230 (328)
..++.+||-+|+|. |..+..+++.....+|+++|.+++..+.+++. + . . .++.. +. . .+ ....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----g---a-~-~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----G---A-T-DFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C---C-C-cEeccccccchHHHHHHHHhC
Confidence 45688999998764 66666677764223699999998888777542 1 1 1 11111 00 0 00 0112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
+.+|+|+-. ... ...+.+..+.|+++ |++++...
T Consensus 253 ~g~d~vid~-----~g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 253 GGVDYSFEC-----TGN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCEEEEC-----CCC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 358888743 222 24577888899885 98887654
No 461
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=81.46 E-value=20 Score=27.89 Aligned_cols=70 Identities=17% Similarity=0.051 Sum_probs=53.9
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
+.-.|+|++.+-=+- .+....|-.+.+.|..+|.+.+.+|-.. ...+.++.++.+....+|+
T Consensus 43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g-----------------r~g~V~~~~I~eaA~taGL 104 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG-----------------RPGHVEPSDIREAAPTAGL 104 (127)
T ss_pred cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC-----------------CCCCCCHHHHHHHHhhcCC
Confidence 456899988765332 2566778889999999999999997643 2356788999999999999
Q ss_pred eEEEEEEe
Q 020307 310 TNYTSKVQ 317 (328)
Q Consensus 310 ~~v~~~~~ 317 (328)
...+...-
T Consensus 105 ~~t~~~~v 112 (127)
T PF11253_consen 105 VQTKSCAV 112 (127)
T ss_pred eeeeeecc
Confidence 87775443
No 462
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.45 E-value=16 Score=31.69 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=49.7
Q ss_pred cCCCeEEEEcCCcCHHHHH----HHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-C------
Q 020307 160 AQGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F------ 228 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~----l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~------ 228 (328)
.+++++|-.|+ +|..+.. |++.+. +|+.++-+...++...+.+... ..++.++.+|+.+.. +
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL----GIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHH
Confidence 35678999985 4444444 444455 8999999887776666555432 346778899987632 1
Q ss_pred ---CCCccceEEecccc
Q 020307 229 ---ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 ---~~~~fD~i~~~~vl 242 (328)
..+.+|+|+.....
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 01468999877553
No 463
>PRK12495 hypothetical protein; Provisional
Probab=81.41 E-value=0.9 Score=38.53 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=24.2
Q ss_pred ccCcccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+..+.|+.||.++... .+..+|+.|+..+-
T Consensus 39 tmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~ 69 (226)
T PRK12495 39 TMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVT 69 (226)
T ss_pred ccchhhcccccCcccCC-----------CCeeECCCCCCccc
Confidence 44567799999999742 27899999998764
No 464
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=81.39 E-value=5 Score=36.16 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=41.9
Q ss_pred CcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE----EEecCCCCC-----CCCCccceEE
Q 020307 171 GSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL----VRADVCRLP-----FASGFVDAVH 237 (328)
Q Consensus 171 G~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~----~~~d~~~lp-----~~~~~fD~i~ 237 (328)
|+|.++..|.++ +| .+++.+|.++..+...+..+..... ..++.+ +.+|+.+.. +.....|+|+
T Consensus 6 a~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~--~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFP--DPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp TTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC----TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred cccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhccc--ccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 567777666654 43 5799999999999988888753211 234544 477875532 5566899999
Q ss_pred eccccccCC
Q 020307 238 AGAALHCWP 246 (328)
Q Consensus 238 ~~~vl~h~~ 246 (328)
....+-|++
T Consensus 83 HaAA~KhVp 91 (293)
T PF02719_consen 83 HAAALKHVP 91 (293)
T ss_dssp E------HH
T ss_pred EChhcCCCC
Confidence 999999885
No 465
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=81.37 E-value=0.89 Score=42.66 Aligned_cols=32 Identities=28% Similarity=0.631 Sum_probs=24.0
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
.-.||.||......+. +.++|++|+..++...
T Consensus 350 ~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 350 NPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL 381 (421)
T ss_pred CCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence 3469999998865443 3899999998886543
No 466
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.26 E-value=4 Score=36.71 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=59.1
Q ss_pred CeEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCcC-------CCCCeEEEEecCCCC
Q 020307 163 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTI-------LTSNLALVRADVCRL 226 (328)
Q Consensus 163 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~-------~~~~i~~~~~d~~~l 226 (328)
.+|--||+|+ +.++..++..|. +|+.+|.+++.++.+++++.. .+.. ...++. ...|.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 4788899986 345666677666 999999999999987766432 1100 001111 12233211
Q ss_pred CCCCCccceEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEEec
Q 020307 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFL 271 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~~~ 271 (328)
...|+|+-. +.|...-...++.++.+.+ +|+.++...+..
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 245766643 2222222346788888888 788777665543
No 467
>PLN00203 glutamyl-tRNA reductase
Probab=81.24 E-value=7.1 Score=38.28 Aligned_cols=130 Identities=8% Similarity=0.131 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 161 QGGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.+.+|+-||+|. |. .+..|...+ ..+++.++.+.+..+.....+. .......++.++.-.-...|+|++
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs~era~~La~~~~--------g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRSEERVAALREEFP--------DVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhC--------CCceEeecHhhHHHHHhcCCEEEE
Confidence 468999999975 33 333444444 2479999999877665554321 111222222222211246899997
Q ss_pred ccccccCCChHHHHHHHHhcccC-CcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 239 GAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
.-.-.+.--....++.+...-+. +..+++.+...+....+-+.+. .....|+.++|+.+.+
T Consensus 336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l------~~v~lydiDdL~~i~~ 397 (519)
T PLN00203 336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSEL------ESARVYNVDDLKEVVA 397 (519)
T ss_pred ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccC------CCCeEEEeccHHHHHH
Confidence 64332211112334444322111 2336666766554333321110 2344555566555544
No 468
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.19 E-value=0.73 Score=36.84 Aligned_cols=50 Identities=28% Similarity=0.544 Sum_probs=30.5
Q ss_pred CcccccCCCchhhcc--CCCCccccccccCceeeCCCCccccCccceeeeec
Q 020307 59 DLFSCPICYEPLIRK--GPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTV 108 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~ 108 (328)
.+-.||.|+.+..-. .+....++.-+....+|.+||..||..+..++...
T Consensus 38 tI~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~aa~ 89 (158)
T PF10083_consen 38 TITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALEAAN 89 (158)
T ss_pred HHHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHHHHH
Confidence 345699998865321 11122233334456789999999998776655433
No 469
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.05 E-value=25 Score=29.87 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCcCHHHHHH----HHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGLFSRKF----AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l----~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
.+.+||-+|. +|.++..+ ++.+. +|++++.++...+...+.+.. ..++.++.+|+.+.. +.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNN-----KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhc-----cCcEEEEEccCCCHHHHHHHHHHH
Confidence 3568898885 45544444 44454 899999888766655554432 246788888886532 11
Q ss_pred ---CCccceEEeccccc
Q 020307 230 ---SGFVDAVHAGAALH 243 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~ 243 (328)
-+.+|+|+......
T Consensus 77 ~~~~~~~d~vi~~ag~~ 93 (237)
T PRK07326 77 VAAFGGLDVLIANAGVG 93 (237)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 13689888765443
No 470
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.01 E-value=16 Score=31.80 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=45.5
Q ss_pred CeEEEEcCCcCHHHHH----HHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-----
Q 020307 163 GLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----- 228 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~----l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----- 228 (328)
.+||-.|+. |..+.. +++.+. +|++++.++...+...+.+... ..++.++.+|+.+.. +
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADH----GGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467877754 444443 445554 8999999887666555544432 346778888886632 0
Q ss_pred CCCccceEEecccc
Q 020307 229 ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 ~~~~fD~i~~~~vl 242 (328)
.-+..|+|+.+...
T Consensus 75 ~~~~id~vi~~ag~ 88 (263)
T PRK06181 75 RFGGIDILVNNAGI 88 (263)
T ss_pred HcCCCCEEEECCCc
Confidence 01358999877554
No 471
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=80.90 E-value=14 Score=34.25 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=57.8
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCC-----CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----PFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-----p~~~ 230 (328)
..++.+||-.|+|. |.++..+++.....+++++|.+++..+.+++. ... .++..+- ..+ ....
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~--------Ga~-~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF--------GVT-EFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc--------CCc-eEEcccccchhHHHHHHHHhC
Confidence 45788999998764 56666677764223799999999888877652 111 1111100 000 0112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
+.+|+++-. +.. ...+....+.+++| |++++...
T Consensus 256 ~~~d~vid~-----~G~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 256 GGVDYSFEC-----TGN-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CCCCEEEEC-----CCC-hHHHHHHHHHhhcCCCEEEEECc
Confidence 357877642 222 33567778889996 98887654
No 472
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.89 E-value=7.5 Score=39.83 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=63.0
Q ss_pred CeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCcC-------CCCCeEEEEecCCCC
Q 020307 163 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTI-------LTSNLALVRADVCRL 226 (328)
Q Consensus 163 ~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~-------~~~~i~~~~~d~~~l 226 (328)
.+|.-||+|+ |. ++..++..|. +|+.+|++++.++.+.+++.. .+.. ...++.+. .|+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 5799999998 33 5555666665 999999999999887766532 1100 01122221 222221
Q ss_pred CCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
...|+|+-. +.|.+.-...+++++.++++|+.+|...+..
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 391 ----ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred ----cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 346766643 3344434468999999999999887766644
No 473
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.89 E-value=3.8 Score=32.27 Aligned_cols=123 Identities=9% Similarity=0.062 Sum_probs=64.9
Q ss_pred ccCCCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 159 SAQGGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
..++.++|=+|+|. |. ....|...+. .+++.+.-+.+-.+...+.+. ...+.+.. +.+++-....+|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~------~~~~~~~~--~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG------GVNIEAIP--LEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT------GCSEEEEE--GGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC------ccccceee--HHHHHHHHhhCCeE
Confidence 34688999999875 22 4455555553 359999998876665555442 23444443 33333123479999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEE-EEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVF-VGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 302 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (328)
+..-...+..-....+...... + ++.+...+....+.+.+ ......++.+++++
T Consensus 80 I~aT~~~~~~i~~~~~~~~~~~------~~~v~Dla~Pr~i~~~v~~------~~~v~~~~~d~l~~ 134 (135)
T PF01488_consen 80 INATPSGMPIITEEMLKKASKK------LRLVIDLAVPRDIDPEVAE------LPGVRLYDLDDLKE 134 (135)
T ss_dssp EE-SSTTSTSSTHHHHTTTCHH------CSEEEES-SS-SB-TTCGG------STTECCEEHHHHHH
T ss_pred EEecCCCCcccCHHHHHHHHhh------hhceeccccCCCCChhhcc------cCCeEEEEhhhccc
Confidence 9877665543223322222211 3 55555433333322111 14456777777765
No 474
>PRK06500 short chain dehydrogenase; Provisional
Probab=80.86 E-value=27 Score=29.88 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
+++++|-.|++.|. ++..+++.+. +|++++.+++.++...+.+ ..++.++.+|+.+..-
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAEL-------GESALVIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHh-------CCceEEEEecCCCHHHHHHHHHHHH
Confidence 35678888865432 4444555565 8999998876555444332 2356777888755320
Q ss_pred -CCCccceEEecccc
Q 020307 229 -ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 -~~~~fD~i~~~~vl 242 (328)
..+.+|+++.+...
T Consensus 76 ~~~~~id~vi~~ag~ 90 (249)
T PRK06500 76 EAFGRLDAVFINAGV 90 (249)
T ss_pred HHhCCCCEEEECCCC
Confidence 11468998876544
No 475
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=80.81 E-value=7.5 Score=35.21 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 163 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 163 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+|.=||+|. | .++..+.+.+...+|+++|.+++..+.+++. + .. .....+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g----~~-~~~~~~~~~~---~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----G----LG-DRVTTSAAEA---VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----C----CC-ceecCCHHHH---hcCCCEEEECC
Confidence 5789999886 3 3555566555334899999999877766541 1 11 1111122111 13468887654
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
-... ...+++++...+++|..++.
T Consensus 75 p~~~---~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVGA---SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHHH---HHHHHHHHHhhCCCCCEEEe
Confidence 3221 23456677777788775543
No 476
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=80.81 E-value=1.1 Score=30.85 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=19.8
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-.||.||....... ....+.|+.||...
T Consensus 29 q~C~~CG~~~~~~~---------~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 29 QTCPRCGHRNKKRR---------SGRVFTCPNCGFEM 56 (69)
T ss_pred cCccCccccccccc---------ccceEEcCCCCCEE
Confidence 34999998765511 12589999998764
No 477
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.80 E-value=7 Score=34.93 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=49.8
Q ss_pred eEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 164 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 164 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
+|.=||+|. |.++..|.+.+. +|+++|.+++.++.+.+. ..+.....+.+. -...|+|+..--
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---------g~~~~~~~~~~~----~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---------GLVDEASTDLSL----LKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---------CCcccccCCHhH----hcCCCEEEEcCC
Confidence 466788875 456666777665 899999999888776542 111111111111 235688886543
Q ss_pred cccCCChHHHHHHHHhcccCCcEE
Q 020307 242 LHCWPSPSNAVAEISRILRSGGVF 265 (328)
Q Consensus 242 l~h~~d~~~~l~~~~r~LkpgG~l 265 (328)
... ...+++++...++++.++
T Consensus 67 ~~~---~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IGL---LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHH---HHHHHHHHHHhCCCCcEE
Confidence 221 135677777778776544
No 478
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=80.80 E-value=18 Score=25.74 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=41.1
Q ss_pred CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCcEEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFA 324 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~~~~~~ 324 (328)
|-|.-.+++..+-+++|+.+.+..-+. -+.+++..+.+..|.+++.....+..+.+.
T Consensus 20 P~Pll~~kk~l~~l~~G~~l~V~~dd~----------------------~~~~di~~~~~~~G~~~~~~~~~~g~~~~~ 76 (81)
T PRK00299 20 PEPVMMVRKTVRNMQPGETLLIIADDP----------------------ATTRDIPSFCRFMDHELLAQETEQLPYRYL 76 (81)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeCCc----------------------cHHHHHHHHHHHcCCEEEEEEecCCEEEEE
Confidence 556667888888999999887765322 245789999999999998755544443333
No 479
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=80.62 E-value=1.3 Score=25.31 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=21.2
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
+.|.-|+..|....+. ..++|..|+..
T Consensus 2 ~~C~~C~t~L~yP~gA---------~~vrCs~C~~v 28 (31)
T TIGR01053 2 VVCGGCRTLLMYPRGA---------SSVRCALCQTV 28 (31)
T ss_pred cCcCCCCcEeecCCCC---------CeEECCCCCeE
Confidence 5799999988776544 68999999754
No 480
>PRK05872 short chain dehydrogenase; Provisional
Probab=80.59 E-value=13 Score=33.23 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+++++|-.|++.|- .+..+++.|. +|+.++.+++.++...+.+.. ...+..+.+|+.+.. +
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGG-----DDRVLTVVADVTDLAAMQAAAEEAV 80 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46789988876542 4455555565 899999998877665554421 234555668876532 0
Q ss_pred -CCCccceEEeccccc
Q 020307 229 -ASGFVDAVHAGAALH 243 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~ 243 (328)
.-+.+|+++.+..+.
T Consensus 81 ~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 81 ERFGGIDVVVANAGIA 96 (296)
T ss_pred HHcCCCCEEEECCCcC
Confidence 115689999877653
No 481
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=80.57 E-value=6.8 Score=26.75 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=40.2
Q ss_pred CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCcEEEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAA 325 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~~~~~~a 325 (328)
|.|.-.++...+-|++|..+.+..-+. -+..++..+++..|++++.....+..+.+.-
T Consensus 11 P~Pll~~~~~l~~l~~G~~l~v~~d~~----------------------~~~~di~~~~~~~g~~~~~~~~~~~~~~i~I 68 (70)
T PF01206_consen 11 PMPLLKAKKALKELPPGEVLEVLVDDP----------------------AAVEDIPRWCEENGYEVVEVEEEGGEYRILI 68 (70)
T ss_dssp THHHHHHHHHHHTSGTT-EEEEEESST----------------------THHHHHHHHHHHHTEEEEEEEESSSSEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEECCc----------------------cHHHHHHHHHHHCCCEEEEEEEeCCEEEEEE
Confidence 445556777788889998887766332 2457899999999999888655555444443
Q ss_pred e
Q 020307 326 Q 326 (328)
Q Consensus 326 ~ 326 (328)
+
T Consensus 69 ~ 69 (70)
T PF01206_consen 69 R 69 (70)
T ss_dssp E
T ss_pred E
Confidence 3
No 482
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.53 E-value=8.1 Score=36.61 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=54.0
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..+++|+-+|+|. |......++.. +.+|+++|.++.....+.. . ...+. ++++. . ...|+|+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~---------~-G~~v~--~leea-l--~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM---------D-GFRVM--TMEEA-A--KIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh---------c-CCEeC--CHHHH-H--hcCCEEEE
Confidence 3688999999997 66555555542 4589999998865444432 1 12221 22221 1 24688876
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.- ..+..+=.+....+|+|++++...
T Consensus 257 aT-----G~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 257 AT-----GNKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CC-----CCHHHHHHHHHhcCCCCcEEEEEC
Confidence 32 233332345888999999888765
No 483
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=80.51 E-value=0.83 Score=38.11 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=26.0
Q ss_pred ccCcccccCCCchhhccCCC--CccccccccCceeeCCCCccc
Q 020307 57 EGDLFSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~--~~~~~~~~~~~~~C~~C~~~~ 97 (328)
....+.||+|++.+...... .--++.+......|.+||-++
T Consensus 11 ~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~ 53 (201)
T COG1779 11 FETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS 53 (201)
T ss_pred eeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence 34567899999965332110 012455566788999998665
No 484
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=80.51 E-value=23 Score=33.53 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=58.5
Q ss_pred ccCCCeEEEEc-CC-cCHHHHHHHHhC-C-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC---CCC----
Q 020307 159 SAQGGLLVDVS-CG-SGLFSRKFAKSG-T-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RLP---- 227 (328)
Q Consensus 159 ~~~~~~vLDiG-cG-~G~~~~~l~~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~lp---- 227 (328)
..++.+||-+| +| .|.++..+++.. . ..+++++|.+++.++.+++....... .........+.. .+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~--~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA--SRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc--ccCceEEEECCCccccHHHHHH
Confidence 45678999887 45 477777777762 1 23699999999999888774211000 001111111111 110
Q ss_pred --CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 020307 228 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
.....+|+|+... .. ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~-----g~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFV-----PV-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcC-----CC-HHHHHHHHHHhccCCeEEEE
Confidence 1123588887532 12 34578888999988876553
No 485
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=80.33 E-value=0.68 Score=37.25 Aligned_cols=38 Identities=18% Similarity=0.503 Sum_probs=23.6
Q ss_pred ccCcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
....+.||.|+..+...... .... ..+.+.|+.||..-
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~--~~~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEAN--QLLD-MDGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHH--HhcC-CCCcEECCCCCCEE
Confidence 34679999999866442211 1111 23569999998653
No 486
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=80.18 E-value=0.68 Score=37.75 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=23.1
Q ss_pred ccCcccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
....+.||.|+..+.... .....+.|+.||..
T Consensus 106 ~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM 137 (158)
T ss_pred CCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence 447789999998765432 23357999999865
No 487
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.15 E-value=7.4 Score=37.11 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+.+|+-+|+|. |......++.. +.+|+.+|.++.....+.. . ...+ .++.+. -...|+|+..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~---------~-G~~v--~~l~ea---l~~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAM---------D-GFRV--MTMEEA---AELGDIFVTA 274 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHh---------c-CCEe--cCHHHH---HhCCCEEEEC
Confidence 688999999986 54444444432 4499999999865544432 1 1221 122221 1257998864
Q ss_pred cccccCCChHHHH-HHHHhcccCCcEEEEEEe
Q 020307 240 AALHCWPSPSNAV-AEISRILRSGGVFVGTTF 270 (328)
Q Consensus 240 ~vl~h~~d~~~~l-~~~~r~LkpgG~l~i~~~ 270 (328)
- ..+. .+ .+....+|+|++++....
T Consensus 275 T-----G~~~-vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 275 T-----GNKD-VITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred C-----CCHH-HHHHHHHhcCCCCCEEEEcCC
Confidence 3 2333 44 478889999998877653
No 488
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=80.10 E-value=23 Score=32.23 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=57.4
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec------CCCCCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD------VCRLPFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d------~~~lp~~~ 230 (328)
..++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++. + . ..++..+ +... ...
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~----g---~--~~~~~~~~~~~~~~~~~-~~~ 225 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL----G---A--DDTINPKEEDVEKVREL-TEG 225 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----C---C--CEEecCccccHHHHHHH-hCC
Confidence 45677899998765 66666777664 345 99999888776665431 1 1 1111111 1111 122
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..+|+|+..- .....+..+.+.|+++|+++...
T Consensus 226 ~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 226 RGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 3489888542 12346788899999999988765
No 489
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.87 E-value=7.1 Score=35.09 Aligned_cols=41 Identities=29% Similarity=0.522 Sum_probs=31.2
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q 020307 163 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFI 205 (328)
Q Consensus 163 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~ 205 (328)
.+|.-||+|. | .++..++..+. +|+.+|.+++.++.+++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHH
Confidence 4688899986 4 35666666665 8999999999998776543
No 490
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.73 E-value=30 Score=30.15 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-----C---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~--- 229 (328)
+++++|-.|.+.|- ++..|++++. +|++++.+++.++...+.+... ..++.++.+|+.+... .
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAA----GRRAHVVAADLAHPEATAGLAGQAV 82 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46789999865431 3444555555 9999999887766655554332 3467788888866431 0
Q ss_pred --CCccceEEeccc
Q 020307 230 --SGFVDAVHAGAA 241 (328)
Q Consensus 230 --~~~fD~i~~~~v 241 (328)
-+.+|+|+....
T Consensus 83 ~~~~~id~vi~~Ag 96 (263)
T PRK07814 83 EAFGRLDIVVNNVG 96 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 146899987643
No 491
>PRK09242 tropinone reductase; Provisional
Probab=79.50 E-value=40 Score=29.18 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
.++++|-.|++.|- +...+++.+. +|+.++.+.+.++...+.+..... ..++.++.+|+.+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFP--EREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCC--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46789999976542 4555556665 899999888777666555543210 236778888886531
Q ss_pred CCCCccceEEecccc
Q 020307 228 FASGFVDAVHAGAAL 242 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl 242 (328)
-.-+.+|+++.....
T Consensus 84 ~~~g~id~li~~ag~ 98 (257)
T PRK09242 84 DHWDGLHILVNNAGG 98 (257)
T ss_pred HHcCCCCEEEECCCC
Confidence 012468998877654
No 492
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=79.42 E-value=0.77 Score=38.20 Aligned_cols=32 Identities=25% Similarity=0.651 Sum_probs=23.1
Q ss_pred ccCcccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
+...+.||.|+..+.... .....+.|+.||..
T Consensus 114 ~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM 145 (178)
T ss_pred CCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence 346899999998765432 23358999999864
No 493
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.38 E-value=4.4 Score=32.45 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=25.4
Q ss_pred EEcCCcC--HHHHHHH--HhCCCceEEEEeCCHHHHHHHHHH
Q 020307 167 DVSCGSG--LFSRKFA--KSGTYSGVVALDFSENMLRQCYDF 204 (328)
Q Consensus 167 DiGcG~G--~~~~~l~--~~~~~~~v~g~D~s~~~~~~a~~~ 204 (328)
|||+..| .....+. ..++..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 456677999999999999988888
No 494
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.21 E-value=23 Score=30.66 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
+++++|-.|+..| .+...|++.+. +|+.++.++...+...+.+... ..++.++.+|+.+...
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKA----GGKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhc----CceEEEEECCCCCHHHHHHHHHHHH
Confidence 3568887776433 24445555565 8999999987776666655442 3457788899865331
Q ss_pred -CCCccceEEecccccc
Q 020307 229 -ASGFVDAVHAGAALHC 244 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h 244 (328)
..+..|+|+.+....+
T Consensus 80 ~~~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 80 ERFGSVDILVSNAGIQI 96 (262)
T ss_pred HHcCCCCEEEECCccCC
Confidence 1145898887665533
No 495
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.19 E-value=16 Score=33.31 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=59.7
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCC-C-CCCCCc
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCR-L-PFASGF 232 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~-l-p~~~~~ 232 (328)
...++.+||-.|+ |.|.++..+++.. +.++++++.+++..+.+++.+.. ..-+..... +..+ + ....+.
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa-----~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGF-----DDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC-----ceeEEcCCcccHHHHHHHhCCCC
Confidence 3457889999986 3477777777763 44899999888877777653211 000110000 1100 0 011245
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+|+|+-. +. ...+.+..+.|+++|+++...
T Consensus 222 vd~v~d~-----~g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 222 IDIYFDN-----VG--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred cEEEEEC-----CC--HHHHHHHHHHhccCcEEEEec
Confidence 8888743 22 245788999999999988654
No 496
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.03 E-value=1.4 Score=37.78 Aligned_cols=11 Identities=27% Similarity=0.993 Sum_probs=8.8
Q ss_pred cccccCCCchh
Q 020307 60 LFSCPICYEPL 70 (328)
Q Consensus 60 ~l~CP~C~~~l 70 (328)
-..||+|++.+
T Consensus 5 ~~~CPvC~~~F 15 (214)
T PF09986_consen 5 KITCPVCGKEF 15 (214)
T ss_pred ceECCCCCCee
Confidence 46799999864
No 497
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=78.98 E-value=1.2 Score=34.88 Aligned_cols=42 Identities=19% Similarity=0.438 Sum_probs=26.8
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccccCcccee
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYL 104 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~ 104 (328)
....||.|++........ . ....+.++|..|+..|....|+.
T Consensus 29 ~~~~cP~C~s~~~~k~g~-~---~~~~qRyrC~~C~~tf~~~~~~~ 70 (129)
T COG3677 29 TKVNCPRCKSSNVVKIGG-I---RRGHQRYKCKSCGSTFTVETGSP 70 (129)
T ss_pred ccCcCCCCCccceeeECC-c---cccccccccCCcCcceeeeccCc
Confidence 457799999876222211 1 11146899999999886665553
No 498
>COG4640 Predicted membrane protein [Function unknown]
Probab=78.93 E-value=0.99 Score=41.57 Aligned_cols=29 Identities=21% Similarity=0.671 Sum_probs=20.5
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
+..||.||+.-.. +...|++||+.+-.+.
T Consensus 1 M~fC~kcG~qk~E-------------d~~qC~qCG~~~t~~~ 29 (465)
T COG4640 1 MKFCPKCGSQKAE-------------DDVQCTQCGHKFTSRQ 29 (465)
T ss_pred CCccccccccccc-------------ccccccccCCcCCchh
Confidence 3569999976533 3556999999875443
No 499
>PRK08177 short chain dehydrogenase; Provisional
Probab=78.88 E-value=19 Score=30.62 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=41.1
Q ss_pred CeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CCCC
Q 020307 163 GLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FASG 231 (328)
Q Consensus 163 ~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~~ 231 (328)
+++|=.|+..|. ++..|++.+. +|++++.++...+...+ ..++.+..+|+.+.. +..+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGPQQDTALQA---------LPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCCcchHHHHh---------ccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 357777764432 4555666665 89999988765543322 235566777875532 2234
Q ss_pred ccceEEeccc
Q 020307 232 FVDAVHAGAA 241 (328)
Q Consensus 232 ~fD~i~~~~v 241 (328)
.+|+|+.+..
T Consensus 71 ~id~vi~~ag 80 (225)
T PRK08177 71 RFDLLFVNAG 80 (225)
T ss_pred CCCEEEEcCc
Confidence 6898887654
No 500
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.53 E-value=10 Score=33.92 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=56.8
Q ss_pred eEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH-------hcCcCC-------CCCeEEEEecCCCCC
Q 020307 164 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTIL-------TSNLALVRADVCRLP 227 (328)
Q Consensus 164 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~~~~-------~~~i~~~~~d~~~lp 227 (328)
+|--||+|. +.++..++..+. +|+++|++++.++.+++++. +.+... ..++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD-- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH--
Confidence 677889985 456666777765 89999999999876654322 211000 002221 223221
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-...|+|+..- -+.+.-...+++++.+.++|+..+...+
T Consensus 80 --~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 --LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 13467777532 1211112478899999999988774433
Done!