BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020309
         (328 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A0LTM4|MURC_ACIC1 UDP-N-acetylmuramate--L-alanine ligase OS=Acidothermus
           cellulolyticus (strain ATCC 43068 / 11B) GN=murC PE=3
           SV=1
          Length = 477

 Score = 36.2 bits (82), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 89  IPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGEGALAGM---PLQLAGT 145
           +P   PE+ V R   L  L R  AL+    G+R  V V G+ G+     M    LQ  G 
Sbjct: 87  VPPTTPELAVARERGLPVLPRAAALASVMAGRR-GVAVAGTHGKTTTTSMVVRALQRCGA 145

Query: 146 RKILEFMDWGDYGAKGTFVE--IGSIGANEVDEQDDMFILVAPQNA-VGNCIIDDMKAMT 202
                F    D G  G+      GSI   E DE D+ F+L+    A V N   D +    
Sbjct: 146 DP--SFAIGADLGEPGSNAHDGTGSIFVAEADESDESFLLLPFHAAVVTNVEADHLNHYA 203

Query: 203 DAA 205
           D A
Sbjct: 204 DLA 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,887,765
Number of Sequences: 539616
Number of extensions: 5237613
Number of successful extensions: 12160
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12157
Number of HSP's gapped (non-prelim): 8
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)