Query 020309
Match_columns 328
No_of_seqs 129 out of 174
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02842 nucleotide kinase 100.0 5.7E-97 1E-101 747.3 29.1 314 2-326 192-505 (505)
2 PF09353 DUF1995: Domain of un 100.0 8.6E-50 1.9E-54 363.6 23.4 197 64-303 8-208 (209)
3 PF07302 AroM: AroM protein; 53.2 1.4E+02 0.0031 28.1 10.0 148 42-214 50-209 (221)
4 cd07947 DRE_TIM_Re_CS Clostrid 43.2 98 0.0021 29.9 7.5 62 62-132 111-175 (279)
5 PF15470 DUF4637: Domain of un 41.9 9.5 0.00021 34.0 0.3 10 317-326 89-98 (173)
6 PF09345 DUF1987: Domain of un 41.3 1.2E+02 0.0026 25.0 6.7 55 64-126 26-83 (99)
7 PF13200 DUF4015: Putative gly 40.2 2.3E+02 0.005 28.1 9.7 78 43-124 105-192 (316)
8 PF09822 ABC_transp_aux: ABC-t 35.6 2.6E+02 0.0056 26.1 8.9 50 171-221 191-240 (271)
9 PRK01889 GTPase RsgA; Reviewed 31.8 69 0.0015 31.8 4.6 42 175-216 111-152 (356)
10 PF14258 DUF4350: Domain of un 31.5 1E+02 0.0022 22.8 4.5 36 175-211 32-68 (70)
11 KOG1838 Alpha/beta hydrolase [ 27.5 1.8E+02 0.0039 30.0 6.8 41 175-216 121-163 (409)
12 PF10087 DUF2325: Uncharacteri 27.4 93 0.002 24.7 3.8 32 182-214 51-82 (97)
13 KOG1200 Mitochondrial/plastidi 24.6 2.3E+02 0.005 27.0 6.3 27 106-132 25-51 (256)
14 KOG1759 Macrophage migration i 22.9 80 0.0017 27.0 2.7 40 47-87 1-42 (115)
15 PF04413 Glycos_transf_N: 3-De 22.4 1.4E+02 0.0031 26.8 4.5 60 179-248 97-156 (186)
16 TIGR00853 pts-lac PTS system, 21.8 76 0.0016 25.6 2.3 32 181-216 53-84 (95)
17 COG1030 NfeD Membrane-bound se 21.8 3E+02 0.0064 28.7 7.0 65 56-132 33-97 (436)
18 PF10872 DUF2740: Protein of u 21.5 46 0.001 23.6 0.8 12 233-244 16-27 (48)
19 cd07939 DRE_TIM_NifV Streptomy 20.9 5.1E+02 0.011 24.2 8.1 59 62-132 106-164 (259)
20 TIGR03837 efp_adjacent_2 conse 20.2 4.1E+02 0.0089 27.1 7.5 32 97-132 9-41 (371)
No 1
>PLN02842 nucleotide kinase
Probab=100.00 E-value=5.7e-97 Score=747.33 Aligned_cols=314 Identities=82% Similarity=1.321 Sum_probs=298.8
Q ss_pred chhhHHHHHHHHHHHhhhhhccccCCCcccccccccccccCCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCc
Q 020309 2 VFADIESLLSQAKREKMKKTTAVKPVHERKSRSNQVSSSQDNWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRT 81 (328)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ln~vP~~re~~~~f~~qA~~A~~~Al~dG~~ 81 (328)
||++|.++|+++..++.. . .++..++++|++|+||||+||||||+||+|+|||+||++||++|++||++
T Consensus 192 VfeeI~~iL~~~L~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~g~~ 260 (505)
T PLN02842 192 VFEEISSLLSQIQKDATK--M---------IKTKKASPVQDKWRGIPTRLNNIPHSREIRAYFYDDVLQATQRAVNDGRT 260 (505)
T ss_pred HHHHHHHHHHHHHhhhhh--h---------cccccccchhhhhccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 788999999887766631 1 11235678999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhcCCCeeEEEeeCCcchhhhcCCCccchhhhhhhhhcccCCCCCCc
Q 020309 82 RLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKG 161 (328)
Q Consensus 82 Rl~VEl~fPeL~~e~D~yri~t~~~lar~~~~~l~~~g~rvkI~fPD~aG~aala~~~~~l~g~~~il~~~dw~~~~~~~ 161 (328)
|++||+.||||+++||+|||||+|+|||+|+.+|+++|+|||||||||||+|||+|+|++|+|+++|+++|||+++++++
T Consensus 261 r~~~~~~~pel~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kv~~~~~~g~~~~~~~~~~~~~~~~~~~~~dw~~~~~~~ 340 (505)
T PLN02842 261 RLKVEINIPELNPEMDVYRIGTLMELVRVLALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKG 340 (505)
T ss_pred eEEEEEecCccccccccccchhHHHHHHHHHHHHhhcCCceEEEecCCcchhHhccCccccccchhhhhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCCCCCCCEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCCcCCCCCCcCccCchhhHHHHHhhhc
Q 020309 162 TFVEIGSIGANEVDEQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAAS 241 (328)
Q Consensus 162 ~f~~~~~~~~~~v~~~dd~~Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~Led~~s~~Gig~~~~R~lr~~Fl~s 241 (328)
+|+++|++|+++++++|++||+|+||+.||+|++++||+||++++||||||+||+|+|+.|++|||++++|++|++|+++
T Consensus 341 ~~~~~~~~~~~~~~~~d~~~i~v~P~~~v~~~~~~~~e~~~~~~~~rpvillnp~LeD~~~~vGig~~~~R~~R~~f~~t 420 (505)
T PLN02842 341 TFVKIGAIGAKEVDEEDDMFILVAPQNAVGNCIIDDLQAMTTAAGKRPVILVNPRLKDLPGSSGIMQTMGREQRLEYAAS 420 (505)
T ss_pred cceeecccccCCCCCCCcEEEEEcCCccccccchHHHHHHHHHhCCCeEEEECCcccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CceeEEEEEecccCcccceeeEEEeecCCCceEEEEecCCCCCCceEEeeecCCCCCHHHHHHHHcCCCccccccCCcch
Q 020309 242 FENCYFFRLLYYAGTQYPIMGALRMTYPNGYELYKRVDVPSGGEKYVILSTFTEKPSSDDINDAFLGKPRNREKKASGFW 321 (328)
Q Consensus 242 fe~vYylr~L~~~g~~~p~~GaLfR~YPgpWqV~~~~~~~~g~g~Y~~v~~~~~RPs~eel~~~l~~~~~~~~~~~~~~~ 321 (328)
|++|||||||+++||+||++|||+|+||++||||++++...+.++|+++++|++||++|||+++|.++++++++|+||||
T Consensus 421 ~~~~Y~~~~l~~~~~~~~~~gal~~~yp~~w~l~~~~~~~~~~~~y~~~~~~~~~P~~e~i~~~~~~~~~~~~~~~~~~~ 500 (505)
T PLN02842 421 FENCYSFRLLYYAGTQYPIMGALRMSYPYRYELYKRVDEENGKEKYIILATFSERPTPDEINDAFSGRSRDQAKKASGIW 500 (505)
T ss_pred hhheeEEEeccccccccccceeeeecCCCCeeEEEecCccccCcceEEeeecCCCCCHHHHHHHhCCCccchhhccccch
Confidence 99999999999999999999999999999999999877544568999999999999999999999999999999999999
Q ss_pred hcccc
Q 020309 322 GFLSS 326 (328)
Q Consensus 322 ~~~~~ 326 (328)
|||||
T Consensus 501 ~~~~~ 505 (505)
T PLN02842 501 GFLSI 505 (505)
T ss_pred hcccC
Confidence 99986
No 2
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=8.6e-50 Score=363.60 Aligned_cols=197 Identities=36% Similarity=0.646 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhcCCCeeEEEeeCCcchhhhcCCCccch
Q 020309 64 FYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGEGALAGMPLQLA 143 (328)
Q Consensus 64 f~~qA~~A~~~Al~dG~~Rl~VEl~fPeL~~e~D~yri~t~~~lar~~~~~l~~~g~rvkI~fPD~aG~aala~~~~~l~ 143 (328)
.++||++|+++||++|.+|++||++||+|++ ++++++++|++.|++.|++++++||| +|++++
T Consensus 8 a~~qA~~Av~~Al~~g~~r~~ve~~fP~l~~--------~~~~la~~~~~~l~~~~~~~~~~~pd-~g~~al-------- 70 (209)
T PF09353_consen 8 AVEQAAEAVQAALEDGDSRQLVELEFPGLNP--------SNMPLAREFARKLAASGRRVRVVFPD-AGEAAL-------- 70 (209)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEECCCcch--------hHHHHHHHHHHHHHhcCceEEEEcCC-hHHHHH--------
Confidence 7999999999999999999999999999943 38999999999999999999999998 999999
Q ss_pred hhhhhhhhcccCCCCCCcceeeeccCCCC-CCCC---CCCEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCCcCC
Q 020309 144 GTRKILEFMDWGDYGAKGTFVEIGSIGAN-EVDE---QDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKD 219 (328)
Q Consensus 144 g~~~il~~~dw~~~~~~~~f~~~~~~~~~-~v~~---~dd~~Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~Led 219 (328)
+.++|++..++ +.++++. .... .|+++|+|+|++. +++++|+||+.+++||||||||+|+|
T Consensus 71 ------A~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~vvv~p~~~----~l~~~e~~~~~~~~rpvvl~Np~l~~ 135 (209)
T PF09353_consen 71 ------ARRDWGDGSFK-----IASLDDWSSSEDESKFDDILVVVAPSPQ----ELDDVEKLCEAAGGRPVVLLNPQLED 135 (209)
T ss_pred ------HhccccCCCeE-----EeeccCccccccccccCCEEEEEECChh----hHHHHHHHHHhcCCCeEEEEeccccc
Confidence 55555443322 3333331 1111 1799999999999 99999999999989999999999999
Q ss_pred CCCCcCccCchhhHHHHHhhhcCceeEEEEEecccCcccceeeEEEeecCCCceEEEEecCCCCCCceEEeeecCCCCCH
Q 020309 220 LPGSSGIMQTMGRDKRLEYAASFENCYFFRLLYYAGTQYPIMGALRMTYPNGYELYKRVDVPSGGEKYVILSTFTEKPSS 299 (328)
Q Consensus 220 ~~s~~Gig~~~~R~lr~~Fl~sfe~vYylr~L~~~g~~~p~~GaLfR~YPgpWqV~~~~~~~~g~g~Y~~v~~~~~RPs~ 299 (328)
.++ +|+| +++|++|++|+++||+||||||++++| .|+||||||||||||++++ +|+|+||+++++|||+
T Consensus 136 ~~~-~g~g-~~~r~~~~~Fl~~fe~vY~l~~l~~~~-----~gal~r~yP~~Wqv~~~~~----~~~y~~v~~~~~rP~~ 204 (209)
T PF09353_consen 136 VRS-VGFG-FPGRKLRERFLSSFETVYYLRPLRISG-----NGALFRCYPGPWQVFREDD----DGEYECVAEFEERPTY 204 (209)
T ss_pred CCc-cccc-cccHHHHHHHHhhceEEEEEEeeccCC-----cEEEEEeCCCCcEEEEEcC----CCcEEEEEecccCCCh
Confidence 884 5677 889999999999999999999998875 4999999999999999874 2899999999999999
Q ss_pred HHHH
Q 020309 300 DDIN 303 (328)
Q Consensus 300 eel~ 303 (328)
+||+
T Consensus 205 ~e~~ 208 (209)
T PF09353_consen 205 EELE 208 (209)
T ss_pred HHhh
Confidence 9997
No 3
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=53.17 E-value=1.4e+02 Score=28.14 Aligned_cols=148 Identities=15% Similarity=0.159 Sum_probs=78.0
Q ss_pred CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCc--eeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhcCC
Q 020309 42 DNWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRT--RLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDG 119 (328)
Q Consensus 42 ~~~~~~p~~ln~vP~~re~~~~f~~qA~~A~~~Al~dG~~--Rl~VEl~fPeL~~e~D~yri~t~~~lar~~~~~l~~~g 119 (328)
++-..+-|+|++==.-+--+++.....++++...=++|.. .+...=+||.|....-... -..+...+..++...
T Consensus 50 ~ge~vLvTrL~DG~~V~ls~~~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~lle---P~ril~~lV~al~~~- 125 (221)
T PF07302_consen 50 PGEYVLVTRLRDGTQVVLSKKKVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTARNPLLE---PDRILPPLVAALVGG- 125 (221)
T ss_pred CCCceeEEEeCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCcceee---hHHhHHHHHHHhcCC-
Confidence 3346677777732222222332333444444444457763 3444557998875321111 235666677777654
Q ss_pred CeeEEEeeCCcchhhhcCCCccchhhhhhhhhcccCCCCCCcceeeeccC-CC--------CC-CCCCCCEEEEEeccCC
Q 020309 120 KRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFVEIGSI-GA--------NE-VDEQDDMFILVAPQNA 189 (328)
Q Consensus 120 ~rvkI~fPD~aG~aala~~~~~l~g~~~il~~~dw~~~~~~~~f~~~~~~-~~--------~~-v~~~dd~~Ivv~P~~~ 189 (328)
.++=|++|. ..+.+. ....|...+....+....-. ++ .. .+.+.|+.++=|=...
T Consensus 126 ~~vGVivP~-~eQ~~~--------------~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt 190 (221)
T PF07302_consen 126 HQVGVIVPL-PEQIAQ--------------QAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYT 190 (221)
T ss_pred CeEEEEecC-HHHHHH--------------HHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 799999998 788776 56778775443333322211 11 11 1234455554444443
Q ss_pred CccccHHHHHHHHHHcCCCcEEEEc
Q 020309 190 VGNCIIDDMKAMTDAAGTRPVILIN 214 (328)
Q Consensus 190 v~~~el~~ve~l~~~a~drPvVllN 214 (328)
...+++...+.++|||+=|
T Consensus 191 ------~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 191 ------QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred ------HHHHHHHHHHhCCCEEeHH
Confidence 4445555555677777754
No 4
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=43.20 E-value=98 Score=29.88 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhh---hhhHHHHHHHHHHHhcCCCeeEEEeeCCcch
Q 020309 62 NYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRI---GTLMELVRVIALSFADDGKRVKVCVQGSMGE 132 (328)
Q Consensus 62 ~~f~~qA~~A~~~Al~dG~~Rl~VEl~fPeL~~e~D~yri---~t~~~lar~~~~~l~~~g~rvkI~fPD~aG~ 132 (328)
++..+.+.+++..|-+.|.. |++-+.. ..|. +.+++++.+++....+.|-..+|.++|+.|.
T Consensus 111 ~e~l~~~~~~v~~a~~~g~~---v~~~~ed------~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~ 175 (279)
T cd07947 111 EEAMEKYLEIVEEALDHGIK---PRCHLED------ITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGY 175 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCe---EEEEEEc------ccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCc
Confidence 44677788888888888753 4445432 2222 3466788888888777887778999996664
No 5
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=41.94 E-value=9.5 Score=33.98 Aligned_cols=10 Identities=70% Similarity=1.547 Sum_probs=8.3
Q ss_pred CCcchhcccc
Q 020309 317 ASGFWGFLSS 326 (328)
Q Consensus 317 ~~~~~~~~~~ 326 (328)
.||||||||-
T Consensus 89 dsgFWgwlsP 98 (173)
T PF15470_consen 89 DSGFWGWLSP 98 (173)
T ss_pred cCCchhhhcH
Confidence 5789999973
No 6
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=41.27 E-value=1.2e+02 Score=25.02 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHH---hcCCCeeEEEe
Q 020309 64 FYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSF---ADDGKRVKVCV 126 (328)
Q Consensus 64 f~~qA~~A~~~Al~dG~~Rl~VEl~fPeL~~e~D~yri~t~~~lar~~~~~l---~~~g~rvkI~f 126 (328)
||+-..+.++..++.....+++++.+-=+|.. .-.....|.+.| ++.|..|.|-|
T Consensus 26 Fy~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTS--------Ssk~l~~i~~~Le~~~~~g~~V~v~W 83 (99)
T PF09345_consen 26 FYQPILDWLEAYLAEPNKPITFNFKLSYFNTS--------SSKALMDIFDLLEDAAQKGGKVTVNW 83 (99)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEEEEEecH--------hHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999977777777777777653 334445555555 57788887754
No 7
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=40.22 E-value=2.3e+02 Score=28.09 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=49.4
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEE-EEcCCCCC-C------cc-h-hhhhhhHHHHHHHH
Q 020309 43 NWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVE-INIPELNP-E------MD-V-YRIGTLMELVRVIA 112 (328)
Q Consensus 43 ~~~~~p~~ln~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VE-l~fPeL~~-e------~D-~-yri~t~~~lar~~~ 112 (328)
.|++-+..-+-=|+++|+++|.++=|.+|++ -|..-++.+ |+||+-.. + .+ . .|..++...+....
T Consensus 105 ~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~----~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~ 180 (316)
T PF13200_consen 105 VWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK----LGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAR 180 (316)
T ss_pred cccCCCCCccCCCCCHHHHHHHHHHHHHHHH----cCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHH
Confidence 3554444334459999999999998888664 488777766 88999111 1 01 1 14455556666666
Q ss_pred HHHhcCCCeeEE
Q 020309 113 LSFADDGKRVKV 124 (328)
Q Consensus 113 ~~l~~~g~rvkI 124 (328)
..|...|..+-+
T Consensus 181 ~~l~~~~v~vSa 192 (316)
T PF13200_consen 181 EELHPYGVPVSA 192 (316)
T ss_pred HHHhHcCCCEEE
Confidence 667666765544
No 8
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=35.60 E-value=2.6e+02 Score=26.13 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=36.7
Q ss_pred CCCCCCCCCEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCCcCCCC
Q 020309 171 ANEVDEQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKDLP 221 (328)
Q Consensus 171 ~~~v~~~dd~~Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~Led~~ 221 (328)
...+.++.+++|++.|...-...|+..+.+..+ .|++-++|++|.-.+..
T Consensus 191 ~~~IP~~~d~Lvi~~P~~~ls~~e~~~l~~yl~-~GG~ll~~~d~~~~~~~ 240 (271)
T PF09822_consen 191 NEEIPDDADVLVIAGPKTDLSEEELYALDQYLM-NGGKLLILLDPFSVELQ 240 (271)
T ss_pred ccccCCCCCEEEEECCCCCCCHHHHHHHHHHHH-cCCeEEEEECCcccccc
Confidence 345668889999999999655556666666555 46899999999854433
No 9
>PRK01889 GTPase RsgA; Reviewed
Probab=31.83 E-value=69 Score=31.81 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=29.6
Q ss_pred CCCCCEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 020309 175 DEQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (328)
Q Consensus 175 ~~~dd~~Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (328)
.+-|.++||+++.+..+...++.+-.+++..+-.|+|+||=.
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~ 152 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKA 152 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEECh
Confidence 456778999998766544455555555777777899998843
No 10
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=31.54 E-value=1e+02 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCCCCEEEEEeccCCCcc-ccHHHHHHHHHHcCCCcEE
Q 020309 175 DEQDDMFILVAPQNAVGN-CIIDDMKAMTDAAGTRPVI 211 (328)
Q Consensus 175 ~~~dd~~Ivv~P~~~v~~-~el~~ve~l~~~a~drPvV 211 (328)
...+..+|+++|...... .+++.+.+..+ .|++-||
T Consensus 32 ~~~~~tll~i~~~~~~~~~~~~~~l~~~v~-~G~~lvl 68 (70)
T PF14258_consen 32 EADDGTLLVIGPDLRLSEPEEAEALLEWVE-AGNTLVL 68 (70)
T ss_pred CCCCCEEEEEeCCCCCCchHHHHHHHHHHH-cCCEEEE
Confidence 457889999999966432 34555555555 4466555
No 11
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=27.52 E-value=1.8e+02 Score=29.98 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=30.2
Q ss_pred CCCCCEEEEEeccCCCccccHHHHHHHHHHcC--CCcEEEEcCC
Q 020309 175 DEQDDMFILVAPQNAVGNCIIDDMKAMTDAAG--TRPVILINPR 216 (328)
Q Consensus 175 ~~~dd~~Ivv~P~~~v~~~el~~ve~l~~~a~--drPvVllNp~ 216 (328)
+++++-.||+.|....|..+ ..|+-|+..+. +==+|+||+|
T Consensus 121 ~~~~~P~vvilpGltg~S~~-~YVr~lv~~a~~~G~r~VVfN~R 163 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTGGSHE-SYVRHLVHEAQRKGYRVVVFNHR 163 (409)
T ss_pred CCCCCcEEEEecCCCCCChh-HHHHHHHHHHHhCCcEEEEECCC
Confidence 45677889999998855444 89999988762 2357778876
No 12
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.37 E-value=93 Score=24.72 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=25.9
Q ss_pred EEEeccCCCccccHHHHHHHHHHcCCCcEEEEc
Q 020309 182 ILVAPQNAVGNCIIDDMKAMTDAAGTRPVILIN 214 (328)
Q Consensus 182 Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllN 214 (328)
+||.++..|+...+..+.+.|+.. +.|+++.+
T Consensus 51 ~VIv~t~~vsH~~~~~vk~~akk~-~ip~~~~~ 82 (97)
T PF10087_consen 51 LVIVFTDYVSHNAMWKVKKAAKKY-GIPIIYSR 82 (97)
T ss_pred EEEEEeCCcChHHHHHHHHHHHHc-CCcEEEEC
Confidence 345556667777899999999988 99999998
No 13
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=24.56 E-value=2.3e+02 Score=27.01 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCCeeEEEeeCCcch
Q 020309 106 ELVRVIALSFADDGKRVKVCVQGSMGE 132 (328)
Q Consensus 106 ~lar~~~~~l~~~g~rvkI~fPD~aG~ 132 (328)
-+-|.++..|+..|.||.|+--|++++
T Consensus 25 GIGrAia~~la~~Garv~v~dl~~~~A 51 (256)
T KOG1200|consen 25 GIGRAIAQLLAKKGARVAVADLDSAAA 51 (256)
T ss_pred hHHHHHHHHHHhcCcEEEEeecchhhH
Confidence 467889999999999999999985443
No 14
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=22.93 E-value=80 Score=27.01 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=30.8
Q ss_pred CCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEE
Q 020309 47 IPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEI 87 (328)
Q Consensus 47 ~p~-~ln-~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEl 87 (328)
||. +++ |||..+.--. |+.++..++...+.-...++-|++
T Consensus 1 MP~l~i~TNv~~~~V~~~-fe~elt~~lAkimgkP~~~i~V~l 42 (115)
T KOG1759|consen 1 MPVLRIQTNVPVDKVPDG-FEKELTKALAKIMGKPEDYIMVEL 42 (115)
T ss_pred CCeEEEeccCCcccCCcc-HHHHHHHHHHHHhCCChhhEEEEe
Confidence 454 444 8888887766 999999999999988887776654
No 15
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.45 E-value=1.4e+02 Score=26.81 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=26.2
Q ss_pred CEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCCcCCCCCCcCccCchhhHHHHHhhhcCceeEEE
Q 020309 179 DMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAASFENCYFF 248 (328)
Q Consensus 179 d~~Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~Led~~s~~Gig~~~~R~lr~~Fl~sfe~vYyl 248 (328)
+++|++- .. ..+.+-..|... +-|++|+|.++.+-. .-+.. ..+.+.+..++.|..++--
T Consensus 97 ~~~i~~E--tE----lWPnll~~a~~~-~ip~~LvNarls~~s-~~~~~--~~~~~~r~~l~~f~~i~aq 156 (186)
T PF04413_consen 97 DLLIWVE--TE----LWPNLLREAKRR-GIPVVLVNARLSERS-FRRYR--RFPFLFRPLLSRFDRILAQ 156 (186)
T ss_dssp SEEEEES----------HHHHHH------S-EEEEEE-----------------HHHHHHGGG-SEEEES
T ss_pred CEEEEEc--cc----cCHHHHHHHhhc-CCCEEEEeeeecccc-chhhh--hhHHHHHHHHHhCCEEEEC
Confidence 6666653 22 456666555555 789999999998754 22322 3356778888899888753
No 16
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.83 E-value=76 Score=25.59 Aligned_cols=32 Identities=41% Similarity=0.552 Sum_probs=24.7
Q ss_pred EEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 020309 181 FILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (328)
Q Consensus 181 ~Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (328)
+|++.||-. ..++++++.++.. +.||+.++|+
T Consensus 53 vill~pqi~---~~~~~i~~~~~~~-~ipv~~I~~~ 84 (95)
T TIGR00853 53 VVLLAPQVA---YMLPDLKKETDKK-GIPVEVINGA 84 (95)
T ss_pred EEEECchHH---HHHHHHHHHhhhc-CCCEEEeChh
Confidence 778888877 2677777776665 6899999886
No 17
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=3e+02 Score=28.73 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhcCCCeeEEEeeCCcch
Q 020309 56 HSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGE 132 (328)
Q Consensus 56 ~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEl~fPeL~~e~D~yri~t~~~lar~~~~~l~~~g~rvkI~fPD~aG~ 132 (328)
-.-++-.+-+++.+++.+.|-+++...+-++++-|+=- .+-++++.+.+.+..-.|-+++.+ .|+
T Consensus 33 i~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl-----------~~sm~~iv~~i~~s~vPV~~yv~p-~ga 97 (436)
T COG1030 33 IDGAIDPASADYLQRALQSAEEENAAAVVLELDTPGGL-----------LDSMRQIVRAILNSPVPVIGYVVP-DGA 97 (436)
T ss_pred ecCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCch-----------HHHHHHHHHHHHcCCCCEEEEEcC-CCc
Confidence 33456677899999999999999998899999999842 455667777776666666666655 454
No 18
>PF10872 DUF2740: Protein of unknown function (DUF2740); InterPro: IPR022626 This entry is represented by Bacteriophage P22, Orf48. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function has a highly conserved sequence. They are found in Enterobacteria and Enterobacteria phages.
Probab=21.46 E-value=46 Score=23.59 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=10.0
Q ss_pred HHHHHhhhcCce
Q 020309 233 DKRLEYAASFEN 244 (328)
Q Consensus 233 ~lr~~Fl~sfe~ 244 (328)
-+|.+|+++|..
T Consensus 16 ilrdrflssfkq 27 (48)
T PF10872_consen 16 ILRDRFLSSFKQ 27 (48)
T ss_pred HHHHHHHHHhcC
Confidence 478999999975
No 19
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.89 E-value=5.1e+02 Score=24.15 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhcCCCeeEEEeeCCcch
Q 020309 62 NYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGE 132 (328)
Q Consensus 62 ~~f~~qA~~A~~~Al~dG~~Rl~VEl~fPeL~~e~D~yri~t~~~lar~~~~~l~~~g~rvkI~fPD~aG~ 132 (328)
++..+.+.++++.|-+.|. .|.+.+|-.. +. ..+.+.+++..+.+.|.. .|+++|+.|.
T Consensus 106 ~~~~~~~~~~i~~a~~~G~---~v~~~~~~~~------~~--~~~~~~~~~~~~~~~G~~-~i~l~DT~G~ 164 (259)
T cd07939 106 AWVLDQLRRLVGRAKDRGL---FVSVGAEDAS------RA--DPDFLIEFAEVAQEAGAD-RLRFADTVGI 164 (259)
T ss_pred HHHHHHHHHHHHHHHHCCC---eEEEeeccCC------CC--CHHHHHHHHHHHHHCCCC-EEEeCCCCCC
Confidence 3466778888888888886 3455555332 21 245666777777666653 6899996664
No 20
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=20.21 E-value=4.1e+02 Score=27.15 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=20.8
Q ss_pred chh-hhhhhHHHHHHHHHHHhcCCCeeEEEeeCCcch
Q 020309 97 DVY-RIGTLMELVRVIALSFADDGKRVKVCVQGSMGE 132 (328)
Q Consensus 97 D~y-ri~t~~~lar~~~~~l~~~g~rvkI~fPD~aG~ 132 (328)
|.| .||-.+.|||+++. +.|.+||+.+-| ..+
T Consensus 9 DNyGDIGV~WRLArqLa~---e~g~~VrLwvDd-l~a 41 (371)
T TIGR03837 9 DNYGDIGVCWRLARQLAA---EHGHQVRLWVDD-LSA 41 (371)
T ss_pred cCCcchHHHHHHHHHHHH---HhCCEEEEEECC-HHH
Confidence 444 46656666555543 459999999988 444
Done!