Query 020309
Match_columns 328
No_of_seqs 129 out of 174
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 14:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020309.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020309hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lu4a_ c.47.1.10 (A:) Soluble 24.6 50 0.0037 24.0 5.1 88 194-307 42-132 (134)
2 d1t9ha2 c.37.1.8 (A:68-298) Pr 22.9 31 0.0023 29.0 3.9 43 174-216 8-51 (231)
3 d1u0la2 c.37.1.8 (A:69-293) Pr 20.7 41 0.003 28.0 4.2 43 174-216 8-51 (225)
4 d1byra_ d.136.1.1 (A:) Nucleas 16.1 1.7E+02 0.012 21.1 6.5 48 68-128 14-61 (152)
5 d1rcua_ c.129.1.1 (A:) Hypothe 13.2 79 0.0058 24.6 3.9 17 104-120 21-37 (170)
6 d1msza_ d.68.7.1 (A:) SmuBP-2 12.8 1.2E+02 0.0084 20.0 4.1 38 66-115 3-41 (62)
7 d2c4ka1 c.61.1.2 (A:7-166) PRP 12.2 1.8E+02 0.013 22.4 5.9 109 104-248 13-127 (160)
8 d1vqok1 b.39.1.1 (K:1-132) Rib 11.6 80 0.0058 24.3 3.3 32 206-239 91-122 (132)
9 d2j01o1 b.39.1.1 (O:1-122) Rib 11.2 80 0.0058 23.9 3.1 32 206-239 80-112 (122)
10 d2djia1 c.31.1.3 (A:187-363) P 10.8 42 0.003 26.1 1.3 7 207-213 22-28 (177)
No 1
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.61 E-value=50 Score=23.96 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHcCCCcEEEEcCCcCCCCCCcCccCchhhHHHHHhhhcCceeEEEEEecccCcccceeeEEEeec---CC
Q 020309 194 IIDDMKAMTDAAGTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAASFENCYFFRLLYYAGTQYPIMGALRMTY---PN 270 (328)
Q Consensus 194 el~~ve~l~~~a~drPvVllNp~Led~~s~~Gig~~~~R~lr~~Fl~sfe~vYylr~L~~~g~~~p~~GaLfR~Y---Pg 270 (328)
+++.++++.+...+-.+|.+|..= + ...-.+|++.+..-|-+ .+... |.+.+.| .-
T Consensus 42 ~~p~l~~~~~~~~~v~~v~v~~~~-~------------~~~~~~~~~~~~~~~p~-~~d~~-------~~~~~~~~v~~~ 100 (134)
T d1lu4a_ 42 EAPSLSQVAAANPAVTFVGIATRA-D------------VGAMQSFVSKYNLNFTN-LNDAD-------GVIWARYNVPWQ 100 (134)
T ss_dssp HHHHHHHHHHHCTTSEEEEEECSS-C------------HHHHHHHHHHHTCCSEE-EECTT-------SHHHHHTTCCSS
T ss_pred cchhHHHHhhhhcccccccccccc-c------------hhhhhhhhhhhccccce-eeCch-------HHHHHHcCCCcC
Confidence 688888888777677888888631 1 12234566666554443 23333 3444444 23
Q ss_pred CceEEEEecCCCCCCceEEeeecCCCCCHHHHHHHHc
Q 020309 271 GYELYKRVDVPSGGEKYVILSTFTEKPSSDDINDAFL 307 (328)
Q Consensus 271 pWqV~~~~~~~~g~g~Y~~v~~~~~RPs~eel~~~l~ 307 (328)
|.-++...+ |+-+.+.....+++.++|...|.
T Consensus 101 P~~~lid~~-----G~i~~v~~~~g~~~~~~l~~~l~ 132 (134)
T d1lu4a_ 101 PAFVFYRAD-----GTSTFVNNPTAAMSQDELSGRVA 132 (134)
T ss_dssp SEEEEECTT-----SCEEEECCSSSCCCHHHHHHHHH
T ss_pred CEEEEEeCC-----CeEEEEeccCCCCCHHHHHHHHH
Confidence 555555322 66666777777889999998874
No 2
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=22.91 E-value=31 Score=28.97 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=26.3
Q ss_pred CCCCCCEEEEEec-cCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 020309 174 VDEQDDMFILVAP-QNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (328)
Q Consensus 174 v~~~dd~~Ivv~P-~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (328)
|.+=|.++||++. +|..+..-++..--+++..+-.|+|+||=.
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~ 51 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKM 51 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 4566778888754 454333334444445556666888888843
No 3
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.66 E-value=41 Score=28.03 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCCCCCEEEEEec-cCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 020309 174 VDEQDDMFILVAP-QNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (328)
Q Consensus 174 v~~~dd~~Ivv~P-~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (328)
+..=|.++||++. +|.-+..-++..--+++..+=.|+|+||=.
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~ 51 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKM 51 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3455778888873 444322234444455666677889998843
No 4
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}
Probab=16.09 E-value=1.7e+02 Score=21.09 Aligned_cols=48 Identities=10% Similarity=0.263 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhcCCCeeEEEeeC
Q 020309 68 VLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQG 128 (328)
Q Consensus 68 A~~A~~~Al~dG~~Rl~VEl~fPeL~~e~D~yri~t~~~lar~~~~~l~~~g~rvkI~fPD 128 (328)
+.+++.++|..=++. |.|..+.+.+ -++...|..+ ++.|-+|+|++.+
T Consensus 14 ~~~~i~~~I~~A~~~--I~I~~~~~~~----------~~i~~aL~~a-~~rGV~Vril~~~ 61 (152)
T d1byra_ 14 ARVLVLSAIDSAKTS--IRMMAYSFTA----------PDIMKALVAA-KKRGVDVKIVIDE 61 (152)
T ss_dssp HHHHHHHHHHHCSSE--EEEEESSBCC----------HHHHHHHHHH-HHTTCEEEEEEES
T ss_pred HHHHHHHHHHhCCcE--EEEEEEeecC----------HHHHHHHHHH-HhcCCeEEEEEEe
Confidence 455667777665665 4678888864 3455555444 3679999999987
No 5
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=13.23 E-value=79 Score=24.61 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhcCCC
Q 020309 104 LMELVRVIALSFADDGK 120 (328)
Q Consensus 104 ~~~lar~~~~~l~~~g~ 120 (328)
..++|.++.+.|++.|.
T Consensus 21 ~~~~a~~lG~~la~~g~ 37 (170)
T d1rcua_ 21 LRDICLELGRTLAKKGY 37 (170)
T ss_dssp GHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 56788889999988874
No 6
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.82 E-value=1.2e+02 Score=20.01 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCceeEEEEEcCC-CCCCcchhhhhhhHHHHHHHHHHH
Q 020309 66 DDVLQATQRAVNDGRTRLKVEINIPE-LNPEMDVYRIGTLMELVRVIALSF 115 (328)
Q Consensus 66 ~qA~~A~~~Al~dG~~Rl~VEl~fPe-L~~e~D~yri~t~~~lar~~~~~l 115 (328)
++..+.+.+-+.+.++ ++.||+ ++.. --.++-++|..+
T Consensus 3 ~~~~~~i~~Fv~s~~~----~~~f~p~m~~~--------~R~~vH~lA~~~ 41 (62)
T d1msza_ 3 DHFRAMIVEFMASKKM----QLEFPPSLNSH--------DRLRVHQIAEEH 41 (62)
T ss_dssp HHHHHHHHHHHHHTCS----EEEECTTCCSH--------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCC----EEEeCCCCCHH--------HHHHHHHHHHHc
Confidence 4556666777777776 568977 7753 235666666655
No 7
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.23 E-value=1.8e+02 Score=22.42 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHh-cCCCeeEEEeeCCcchhhhcCCCccchhhhhhhhhcccCCCCCCcceeeeccCCCCCCCCCCCEEE
Q 020309 104 LMELVRVIALSFA-DDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFVEIGSIGANEVDEQDDMFI 182 (328)
Q Consensus 104 ~~~lar~~~~~l~-~~g~rvkI~fPD~aG~aala~~~~~l~g~~~il~~~dw~~~~~~~~f~~~~~~~~~~v~~~dd~~I 182 (328)
..+||+++|+.|. +.++-..=-||| ||.-. . +. +.+ .+.++||
T Consensus 13 ~~~LA~~ia~~Lg~~l~~~~~~~F~D--GE~~v--------------~---------------i~----e~v-rg~~V~i 56 (160)
T d2c4ka1 13 CTELAKRITERLGAELGKSVVYQETN--GETRV--------------E---------------IK----ESV-RGQDIFI 56 (160)
T ss_dssp TTHHHHHHHHHTTCCCCCEEEEECTT--SCEEE--------------E---------------EC----SCC-TTCCEEE
T ss_pred hHHHHHHHHHHhCCCccceEEEECCC--CCeee--------------c---------------cC----ccc-cCCceEE
Confidence 4579999999985 455544556787 55322 1 10 122 3457777
Q ss_pred EEeccCCCccccHHHH--HHHHHHcCCCcEEEEcCCcCCCCCC--cCccCchhhHHHHHhhhc-CceeEEE
Q 020309 183 LVAPQNAVGNCIIDDM--KAMTDAAGTRPVILINPRLKDLPGS--SGIMQTMGRDKRLEYAAS-FENCYFF 248 (328)
Q Consensus 183 vv~P~~~v~~~el~~v--e~l~~~a~drPvVllNp~Led~~s~--~Gig~~~~R~lr~~Fl~s-fe~vYyl 248 (328)
+-.-.+.++..-|+.+ -..+..++.+-|+++=|=+-=.|.| ..=|...+|.....+.+. ...+.-+
T Consensus 57 vqs~~~~~n~~lmeLll~~da~k~~~a~~It~ViPY~~YaRQDk~~~~g~i~a~~va~~l~~~g~d~vitv 127 (160)
T d2c4ka1 57 IQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITM 127 (160)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHHHHTTCSCEEEEESSCTTTTTTSCCSSSCCHHHHHHHHHHHTCCCEEEEE
T ss_pred EeccCcchHHHHHHHHHHHHHHHHhCcccceeecccchhhhccccccCCCchHHHHHhHHhhcCcceEEEe
Confidence 7654444332223322 2223445778899998987322221 112223455555555542 4444443
No 8
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=11.64 E-value=80 Score=24.29 Aligned_cols=32 Identities=3% Similarity=0.187 Sum_probs=23.3
Q ss_pred CCCcEEEEcCCcCCCCCCcCccCchhhHHHHHhh
Q 020309 206 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYA 239 (328)
Q Consensus 206 ~drPvVllNp~Led~~s~~Gig~~~~R~lr~~Fl 239 (328)
.+--+||+|++.+-.. .=|.+..+|++|++|.
T Consensus 91 ddNa~VLi~~~~~p~G--TRI~GpV~~Elr~k~~ 122 (132)
T d1vqok1 91 EDNAAVIVDENEDPRG--TELKGPIAREVAQRFG 122 (132)
T ss_dssp SSCEEEEECTTSCBSS--SCBCSCBCHHHHHHSH
T ss_pred CCCEEEEECCCCCEee--eEEeccHhHHHHhhhh
Confidence 4567999999988766 3344367899998765
No 9
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=11.21 E-value=80 Score=23.86 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCcCCCCCCcCccCchhhHHHHH-hh
Q 020309 206 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLE-YA 239 (328)
Q Consensus 206 ~drPvVllNp~Led~~s~~Gig~~~~R~lr~~-Fl 239 (328)
.+--+||+|.+.+-.. .-|.+..+|++|+. |.
T Consensus 80 ~~Na~VLl~~~~~p~G--TrI~Gpv~~elr~~~~~ 112 (122)
T d2j01o1 80 DDNAAVIINNQLEPRG--TRVFGPVARELREKGFM 112 (122)
T ss_dssp SSCEEEEECTTSCCSS--SCCCSCCCTHHHHHCCH
T ss_pred CCCEEEEECCCCCEee--eEEeccchHHHhhcCCc
Confidence 4667999999988766 34554678999887 54
No 10
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=10.84 E-value=42 Score=26.07 Aligned_cols=7 Identities=57% Similarity=0.904 Sum_probs=4.2
Q ss_pred CCcEEEE
Q 020309 207 TRPVILI 213 (328)
Q Consensus 207 drPvVll 213 (328)
.||||++
T Consensus 22 k~Pvii~ 28 (177)
T d2djia1 22 KRPVIYA 28 (177)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 5666655
Done!