BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020312
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1
SV=3
Length = 447
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1
PE=1 SV=1
Length = 447
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1
PE=2 SV=1
Length = 447
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291
>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1
SV=2
Length = 447
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1
PE=2 SV=1
Length = 447
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2
SV=1
Length = 447
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1
PE=2 SV=1
Length = 447
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y GK++KVP
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRV 291
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1
SV=1
Length = 447
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/293 (63%), Positives = 240/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+ L +L+KRF+ E
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP
Sbjct: 61 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D + R++ K+ L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP + E GKVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRV 291
>sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3
Length = 445
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/293 (61%), Positives = 238/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D + + RE+ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IMQNGKVIGVKSEGEIARCKQLICDPSYVKDRV 291
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1
Length = 445
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/293 (61%), Positives = 236/293 (80%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D + RE+ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRV 291
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1
SV=2
Length = 445
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/293 (60%), Positives = 237/293 (80%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + T R++ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRV 291
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2
PE=1 SV=2
Length = 445
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/293 (60%), Positives = 239/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
QPPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY GK++KVP
Sbjct: 61 QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + + R++ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GH+LAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP ++ + GKVVGV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRV 291
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1
SV=1
Length = 445
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/293 (60%), Positives = 239/293 (81%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
QPPA +G RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY GK++KVP
Sbjct: 61 QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + + R++ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GH+LAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP ++ + GKVVGV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRV 291
>sp|Q5RCE1|GDIB_PONAB Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2
SV=1
Length = 445
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/293 (60%), Positives = 237/293 (80%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+ ++ L+KR++
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PP +G RD+NVD+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + T R++ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRV 291
>sp|O97556|GDIB_CANFA Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2
PE=2 SV=1
Length = 445
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/293 (60%), Positives = 236/293 (80%), Gaps = 3/293 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
M+EEYDVIVLGTGL ECILSG+++V+G KVLHMDRN YYGGES+S+ ++ L+KRF+
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
PPA +G RD+N+D+IPKF++ANG LV++L++T+VT+YL FK +GSFVY GK++KVP
Sbjct: 61 APPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D + E+ K+ L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
IDF GHALAL+R D YL++P +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
RLSA+YGGTYMLNKP ++ + GKV+GV SEGE A+CK+++CDPSY+ ++V
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEVARCKQLICDPSYVKDRV 291
>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gdi1 PE=3 SV=1
Length = 440
Score = 362 bits (930), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 173/292 (59%), Positives = 224/292 (76%), Gaps = 1/292 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
MDEEYDVIVLGTGL EC+LSGLLSVDG KVLH+DRNDYYG +S+SLNL QL+ FR EQ
Sbjct: 1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQ 60
Query: 61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
P LG RD+ VD++PKF++ANG L +LI+TDVT+Y+ FK + GS+VY G++ KVP
Sbjct: 61 RPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPG 120
Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
+MEALKSPLM +FEKRRA+KF +V +Y E+DP T++ +++ R + + K+GL T
Sbjct: 121 NEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGT 180
Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
DFIGHA+AL+ DD YL +PA +T +R+ LYA SIA+F G SPYIYPLYGLGELPQ FAR
Sbjct: 181 QDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKF-GKSPYIYPLYGLGELPQGFAR 239
Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
LSA+YGGTYMLN+P ++ + ++G +GV S + AK K+++ DPSY KV
Sbjct: 240 LSAIYGGTYMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKV 291
>sp|P39958|GDI1_YEAST Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1
Length = 451
Score = 334 bits (857), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 161/296 (54%), Positives = 224/296 (75%), Gaps = 6/296 (2%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
+D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N
Sbjct: 6 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 65
Query: 59 --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
E+ + G RD+NVD+IPKF++ANG L +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 66 SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 125
Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
KVPA ++EA+ SPLMGIFEKRR +KF ++ Y E+D TH+G+DL + T E+ K+GL
Sbjct: 126 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 185
Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
++T +FIGHA+AL +D YL +PA + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 186 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 244
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNK 291
FARLSA+YGGTYML+ P +V + ++ GK GV ++ T K V+ DP+Y P K
Sbjct: 245 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK 300
>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila
melanogaster GN=Rep PE=2 SV=1
Length = 511
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 150/316 (47%), Gaps = 33/316 (10%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
+ E++D++V+GTG E ++ S G VLH+D N+YYG SS ++ L R +
Sbjct: 5 LPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVE 64
Query: 61 PPAHL---------------------------GSSRDYNVDMIPKFIIANGALVRVLIHT 93
P + L SR +++D+ P+ + A G LV++LI +
Sbjct: 65 PHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKS 124
Query: 94 DVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND 153
++ +Y F+AVD + + G++ VP + + + + I EKR KF DY E D
Sbjct: 125 NICRYAEFRAVDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGE-D 183
Query: 154 PKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAE 213
+ ++ T E + + + + A+A+ E ++R + +
Sbjct: 184 KCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE----GMQRTQRFLG 239
Query: 214 SIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG 273
S+ R+ G +P+++P+YG GELPQ F RL AVYGG Y L + + D ++S G
Sbjct: 240 SLGRY-GNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAG 298
Query: 274 ETAKCKKVVCDPSYLP 289
+T + K VV P Y P
Sbjct: 299 KTLRAKNVVSAPGYTP 314
>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus
musculus GN=Chml PE=2 SV=2
Length = 621
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 9/228 (3%)
Query: 68 SRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALK 127
SR +N+D++ K + + G+L+ +LI ++V++Y FK V + +GKV +VP + +
Sbjct: 225 SRRFNIDLVSKPLYSQGSLIDLLIKSNVSRYAEFKNVTRILAFWEGKVEQVPCSRADVFN 284
Query: 128 SPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHA 187
S + + EKR KF + DY+++ + E D + + + + L N FI H+
Sbjct: 285 SKELSMVEKRMLMKFLTFCLDYEQH---SDEYQDFKQCSFSDYLKTKKLTPNLQHFILHS 341
Query: 188 LALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGG 247
+A+ + LD ++ K + + + RF G +P+I+PLYG GE+PQ F R+ AV+GG
Sbjct: 342 IAMTSESSCTT---LDGLQATKNFLQCLGRF-GNTPFIFPLYGHGEIPQCFCRMCAVFGG 397
Query: 248 TYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLPNKVI 293
Y L +K +C V + G+ G+ G+ + + SYLP +
Sbjct: 398 VYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSYLPKETC 445
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL--IQLW-KRFRGN 58
E+DV+++GTGL E IL+ S G +VLH+D YYGG +S + +Q W K ++ N
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHVDSRSYYGGNWASFSFTGLQSWLKDYQQN 65
>sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo
sapiens GN=CHML PE=1 SV=2
Length = 656
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 9/226 (3%)
Query: 69 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
R +N+D++ K + + G L+ +LI +DV++Y+ FK V + +GKV +VP + + S
Sbjct: 227 RRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFNS 286
Query: 129 PLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL 188
+ + EKR KF + +Y+++ P ++ + + E + L N F+ H++
Sbjct: 287 KELTMVEKRMLMKFLTFCLEYEQH-PDEYQA--FRQCSFSEYLKTKKLTPNLQHFVLHSI 343
Query: 189 ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGT 248
A+ + +D + K + + + RF G +P+++PLYG GE+PQ F R+ AV+GG
Sbjct: 344 AMTSESSCT---TIDGLNATKNFLQCLGRF-GNTPFLFPLYGQGEIPQGFCRMCAVFGGI 399
Query: 249 YML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLPNKV 292
Y L +K +C V E G+ + G+ K + + SYL +
Sbjct: 400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEET 445
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN---LIQLWKRFRGN 58
E+DV+++GTGL E IL+ S G +VLH+D YYGG +S + L+ K ++ N
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLKEYQQN 65
>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus
musculus GN=Chm PE=2 SV=1
Length = 665
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 18/214 (8%)
Query: 69 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
R +N+D++ K + + G L+ +LI ++V++Y FK + + +G V +VP + + S
Sbjct: 237 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 296
Query: 129 PLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL 188
+ + EKR KF + +Y E+ P ++ + T T E + L N F+ H++
Sbjct: 297 KQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSI 353
Query: 189 ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGT 248
A+ + +D +K K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG
Sbjct: 354 AMTSE---TTSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGI 409
Query: 249 YMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVV 282
Y L V + + E+ KCK +V
Sbjct: 410 YCLRH-----------SVQCLVVDKESRKCKAIV 432
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 37/140 (26%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN---LIQLWKRFRGN-- 58
++DVIV+GTGL E I++ S G +VLH+D YYGG +S + L+ K ++ N
Sbjct: 8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENSD 67
Query: 59 -------------EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVD 105
E A L SS+D + + F A+ L H DV +
Sbjct: 68 VVTENSMWQEQILENEEAILLSSKDKTIQHVEVFCYASQDL-----HKDVEE-------- 114
Query: 106 GSFVYNKGKVHKVPATDMEA 125
G + K PA+ M A
Sbjct: 115 ------AGALQKNPASVMSA 128
>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus
norvegicus GN=Chm PE=1 SV=1
Length = 650
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 111/216 (51%), Gaps = 22/216 (10%)
Query: 69 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
R +N+D++ + + + G L+ +LI ++V++Y FK + + +G V +VP + + S
Sbjct: 222 RRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186
+ + EKR KF + +Y+E ++ + +EG T E + L N F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
++A+ + +D +K K + + + R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAMTSETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVV 282
G Y L V + + E+ KCK V+
Sbjct: 393 GIYCLRH-----------SVQCLVVDKESRKCKAVI 417
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN---LIQLWKRFRG 57
+ ++DVIV+GTGL E I++ S G +VLH+D YYGG +S + L+ K ++
Sbjct: 5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQE 64
Query: 58 N 58
N
Sbjct: 65 N 65
>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo
sapiens GN=CHM PE=1 SV=3
Length = 653
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 18/214 (8%)
Query: 69 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
R +N+D++ K + + G L+ +LI ++V++Y FK + + +G+V +VP + + S
Sbjct: 225 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNS 284
Query: 129 PLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL 188
+ + EKR KF + +Y E P ++G + +T E + L N + H++
Sbjct: 285 KQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSI 341
Query: 189 ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGT 248
A+ + +D +K K + + R+ G +P+++PLYG GELPQ F R+ AV+GG
Sbjct: 342 AMTSE---TASSTIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGI 397
Query: 249 YMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVV 282
Y L V + + E+ KCK ++
Sbjct: 398 YCLRH-----------SVQCLVVDKESRKCKAII 420
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN---LIQLWKRFRGN 58
E+DVIV+GTGL E I++ S G +VLH+D YYGG +S + L+ K ++ N
Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65
>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1
SV=2
Length = 603
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 141/306 (46%), Gaps = 29/306 (9%)
Query: 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP 62
++ DV++ GTG+ E +L+ L+ G VLH+D+NDYYG S++L + Q+ KR+ NE
Sbjct: 45 DKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQI-KRWV-NEVNE 102
Query: 63 AHLG------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAV 104
+ SSRD+ +D+ PK + A L+ +LI + V +YL F+++
Sbjct: 103 GSVSCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSL 162
Query: 105 DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTR 164
Y K+ T E + + KR KF +V +++ + R
Sbjct: 163 SNFHTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNWEAQTEIWQPYAE--R 220
Query: 165 VTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY 224
+ L K+ L+ + + ++ L D LN + ++R++ Y S + G P
Sbjct: 221 TMSDFLGEKFKLEKPQVFELIFSIGLCYD---LNVKVPEALQRIRRYLTSFDVY-GPFPA 276
Query: 225 IYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
+ Y G GEL Q F R +AV G TY LN E V F+ KV + +KV+
Sbjct: 277 LCSKYGGPGELSQGFCRSAAVGGATYKLN--EKLVSFNPTTKVATFQDGSKVEVSEKVII 334
Query: 284 DPSYLP 289
P+ P
Sbjct: 335 SPTQAP 340
>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida
albicans GN=MRS6 PE=3 SV=1
Length = 640
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 155/336 (46%), Gaps = 46/336 (13%)
Query: 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-----------R 54
DV+++GTGL+E IL+ LS G +VLH+D N YYG S+L + QL K +
Sbjct: 5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQ 64
Query: 55 FR-------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGS 107
F+ G +Q + +S+DY +D+ PK + L+ +LI + V +YL F+++
Sbjct: 65 FQDAQIYIPGGKQSNQY--TSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNF 122
Query: 108 FVYN----KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLT 163
V+ + KV+ D+ KS + + KR + + + DP + +
Sbjct: 123 HVFENDDFQQKVNATTKQDIFTDKS--LSLMTKR----YLMKFLKFLLLDPDYKQRVKPY 176
Query: 164 RVTTRE--LIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGG 221
T + L ++ L++ I+ + +++ L ++ + AL RMK + S +
Sbjct: 177 ADTPIQVFLQQEFKLEEPQINELVYSIGLSYKEQTSTKQAL---IRMKRFLSSFDVYGKF 233
Query: 222 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKV 281
+ G GEL Q F R +AV G TY LN +FD K+ +K+
Sbjct: 234 PCMVSKFGGPGELSQGFCRSAAVAGTTYKLNT--NLTDFDPISKIAHFNDGSHIKINEKI 291
Query: 282 VCDPSYLP-------NKVIIIMLIGFI--LIFLVRR 308
+ P+ LP NKV+ + ++ L+ +VRR
Sbjct: 292 IISPTQLPKFLQSSYNKVVENLQPYYVTRLVTVVRR 327
>sp|O60112|YG63_SCHPO Uncharacterized Rab geranylgeranyltransferase C15C4.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC15C4.03 PE=3 SV=1
Length = 459
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 146/322 (45%), Gaps = 46/322 (14%)
Query: 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL---NLIQLWKRFR----- 56
YDVI++GT L+ ILS LS +VLH+D N +YG SL +L Q+ ++ +
Sbjct: 7 YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSS 66
Query: 57 ------GNEQPPAHLGSSRDYNVDMIPKF-----------IIANGALVRVLIHTDVTKYL 99
G+ + P + N D+IPK I A+ LV++L T + KYL
Sbjct: 67 QILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYL 126
Query: 100 YFK-AVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQ----DYDENDP 154
K A + + + KVP + + + + + KR +F +V + ++N
Sbjct: 127 LLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLV 186
Query: 155 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAES 214
K E + ++++ I G +L +D + ALDTV + Y S
Sbjct: 187 KEWESKPFYKFLEEVFQLSGAIEESII--YGLCQSLSKD--IPTKDALDTVLK---YFHS 239
Query: 215 IARFQGGSPYIYPLYGLG-ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG 273
+ G Y+ +YG G EL Q F R SAV GGT+ML + K+ +E K+ V +G
Sbjct: 240 FGMY-GDYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAIDKI---DESKI--VLKDG 293
Query: 274 ETAKCKKVVC--DPSYLPNKVI 293
T KK+V D LP++ I
Sbjct: 294 STLSAKKIVSSVDEGKLPHQQI 315
>sp|P26484|FIXC_AZOC5 Protein FixC OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=fixC PE=3 SV=2
Length = 435
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
+DE++D IV+G G+ + L+ GLKVL ++R +Y G ++
Sbjct: 2 IDEKFDAIVVGAGMAGNAATLTLARRGLKVLQLERGEYSGSKN 44
>sp|A5IYA9|EFTU_MYCAP Elongation factor Tu OS=Mycoplasma agalactiae (strain PG2) GN=tuf
PE=3 SV=1
Length = 396
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 92 HTDVTKYLYFKA--VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDY 149
H D K + A +DGS + +P T L + +G+ K +++
Sbjct: 85 HADYIKNMITGAAQMDGSILVVAATDGAMPQTKEHVLLAKQVGV------PKMVVFLNKC 138
Query: 150 DENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFI-GHAL 188
D P+ E +DL + REL+ KYG D + F+ G AL
Sbjct: 139 DMIKPEDAEMIDLVEMEVRELLTKYGFDGDNTPFVRGSAL 178
>sp|Q06401|3O1D_COMTE 3-oxosteroid 1-dehydrogenase OS=Comamonas testosteroni PE=1 SV=1
Length = 573
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLW 52
++EYD+IV+G+G C GLK L +++ + +GG +S+L+ +W
Sbjct: 3 EQEYDLIVVGSGAGACWAPIRAQEQGLKTLVVEKTELFGG-TSALSGGGIW 52
>sp|Q55629|Y782_SYNY3 Uncharacterized protein slr0782 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0782 PE=3 SV=1
Length = 471
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 120/295 (40%), Gaps = 34/295 (11%)
Query: 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAH 64
D I++G+GL I + LS VL ++ + GG L W G P
Sbjct: 24 DCIIVGSGLSGLIAARNLSRVNYSVLVIEAQERLGGRMYGEYLPSGQWIDRGGQWVGPTQ 83
Query: 65 ---LGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT 121
L +YN++ P A+G ++VL+ D +Y + G F +G+ K+ +
Sbjct: 84 DRFLALLNEYNIERFPS--PADG--LKVLLF-DGKRYEFDGFFQGVF---QGEAPKISSD 135
Query: 122 DMEALKSPLMGIFEKRRARKFFIYVQDYDENDPK-THEGMDLTRVTTRELIAKYGLDDNT 180
+ + M +E KF Q DE P+ T E L T + I +NT
Sbjct: 136 EW----NDAMVAWE-----KFNTLAQSLDEQHPEATPENKKLDSQTFADWI-----KENT 181
Query: 181 IDFIGHAL--ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY-GLGELPQA 237
GH + R +L V + + + QG +P L+ G G++PQ
Sbjct: 182 HTAFGHWYFSYMCRAVGFLGPAEPSQVSLLHILWGHKSASQGENPEAELLHGGAGQIPQ- 240
Query: 238 FARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
+++A G + +L +P + D++G V T+ G+ +V P +L ++
Sbjct: 241 --KIAAELGNSILLGEPVIHIAQDDKGVEV-TTTTGKYQGKFAIVATPPHLAGRI 292
>sp|Q3U4I7|PYRD2_MOUSE Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Mus musculus GN=Pyroxd2 PE=2 SV=2
Length = 580
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 214 SIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SE 272
S+ QG Y+ G+G L A A +A G + K KV+ + EG+V GVT +
Sbjct: 271 SLEGTQGAWSYVQ--GGMGALSDAIASSAATRGASIFTEKTVAKVQVNSEGRVQGVTLQD 328
Query: 273 GETAKCKKVV 282
GE + + V+
Sbjct: 329 GEEVRSRVVL 338
>sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28 OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=fadD28 PE=3 SV=1
Length = 580
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 169 ELIAKYGLDDNTIDF-IGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP 227
EL AK DD+ +G+ L + + +PA T+KR +A+ ARF + P
Sbjct: 274 ELAAKKVSDDDMAGLDLGNVLTILSGSERV-QPA--TLKR---FADRFARFNLQEKVLRP 327
Query: 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287
YGL E + VY T +P VEFD E G + E+ ++V SY
Sbjct: 328 SYGLAE--------ATVYVSTSRPGQPPELVEFDAESLSTGQAKQCESGAGTQLV---SY 376
Query: 288 -LPNKVII 294
LP I+
Sbjct: 377 VLPRSPIV 384
>sp|Q53208|FIXC_RHISN Protein FixC OS=Rhizobium sp. (strain NGR234) GN=fixC PE=3 SV=1
Length = 435
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
+E +D IV+G G+ + ++ GLKVL ++R +Y G ++
Sbjct: 3 EERFDAIVVGAGMSGNAAAYTMASRGLKVLQLERGEYPGSKN 44
>sp|Q05638|CHIX_STROI Exochitinase 1 OS=Streptomyces olivaceoviridis GN=chi01 PE=1 SV=1
Length = 597
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 168 RELIAKYGLDDNTIDFIGHALALHRDDRYLNEP 200
++I +YGLD IDF GH+L+L+ DD P
Sbjct: 368 SKIIDEYGLDGLDIDFEGHSLSLNADDTDFKNP 400
>sp|Q52QW2|CRTS2_ONCHC Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO2 PE=2 SV=1
Length = 587
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
EEYD IV+G+G+ + + L+V G +VL +++ GG S
Sbjct: 68 EEYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 108
>sp|P11707|CP3A6_RABIT Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2
Length = 501
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI---AKYGLD 177
T +E +K + +KRR + + + + +H+ +D V + +I A Y
Sbjct: 249 TSVEKIKDDRLKDKQKRRVDFLQLMINSQNSKEIDSHKALDDIEVVAQSIIILFAGYETT 308
Query: 178 DNTIDFIGHALALHRDDRYLNEPALDTV 205
+T+ FI H LA H D + + +DT+
Sbjct: 309 SSTLSFIMHLLATHPDVQQKLQEEIDTL 336
>sp|Q52QW3|CRTS1_ONCHC Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO1 PE=2 SV=1
Length = 587
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
EEYD IV+G+G+ + + L+V G +VL +++ GG S
Sbjct: 68 EEYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 108
>sp|P09820|FIXC_RHIME Protein FixC OS=Rhizobium meliloti (strain 1021) GN=fixC PE=3
SV=1
Length = 435
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
E++D IV+G G+ + ++ GLKVL ++R +Y G ++
Sbjct: 4 EKFDAIVVGAGMSGNAAAYAMASRGLKVLQLERGEYPGSKN 44
>sp|Q68FT3|PYRD2_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1
Length = 581
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 214 SIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG 273
S+ QG Y+ G+G L A A + +G + K KV+ + EG+V GV +G
Sbjct: 272 SLEGMQGAWSYVQ--GGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEGRVQGVVLQG 329
Query: 274 ETAKCKKVV 282
+VV
Sbjct: 330 GEEVRSRVV 338
>sp|A6UWL1|GGR_META3 Digeranylgeranylglycerophospholipid reductase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1307
PE=3 SV=1
Length = 391
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
+D EYDVIV+G G + S S++G K L +D++ G + F G
Sbjct: 5 LDSEYDVIVIGAGPGGSMASYHSSINGAKTLLIDKSQEIGTPVRCAEAVPYLDEF-GINP 63
Query: 61 PPAHLGSSRDYNVDMIP--KFIIANGA 85
P+ + S D + + P K II G
Sbjct: 64 DPSFIRSKIDGGILVAPNGKKIIVKGG 90
>sp|Q2VEX9|CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO
PE=2 SV=1
Length = 615
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43
EYD IV+G+G+ + + L+V G KVL +++ GG S
Sbjct: 97 EYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYLIPGGSS 136
>sp|Q5RAP5|PYRD2_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing
protein 2 OS=Pongo abelii GN=PYROXD2 PE=2 SV=1
Length = 581
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVV 282
G+G L A A + +G + K KV+ + EG V GV E T KVV
Sbjct: 286 GMGALSDAIASSATTHGASIFTEKTVAKVQVNSEGCVQGVVLEDGTEVRSKVV 338
>sp|P75499|GLF_MYCPN UDP-galactopyranose mutase OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=glf PE=3 SV=1
Length = 399
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42
++D IVLG G+ +LS +L+ G VL +++ + GG
Sbjct: 13 NKFDFIVLGAGISGIVLSHVLAQHGKSVLLLEKRNQLGGN 52
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,602,395
Number of Sequences: 539616
Number of extensions: 5613680
Number of successful extensions: 12842
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 12728
Number of HSP's gapped (non-prelim): 63
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)