Query 020312
Match_columns 328
No_of_seqs 137 out of 1517
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00363 rab-GDP dissociation 100.0 3.5E-43 7.5E-48 313.9 31.4 292 1-293 1-294 (443)
2 PF00996 GDI: GDP dissociation 100.0 1.3E-40 2.7E-45 293.2 25.7 292 1-293 1-293 (438)
3 KOG1439 RAB proteins geranylge 100.0 1.7E-38 3.6E-43 266.6 22.4 293 1-294 1-294 (440)
4 COG5044 MRS6 RAB proteins gera 100.0 1.5E-30 3.2E-35 216.4 20.4 283 1-290 1-285 (434)
5 TIGR02734 crtI_fam phytoene de 100.0 1.3E-26 2.8E-31 214.7 23.0 270 7-308 1-313 (502)
6 COG1233 Phytoene dehydrogenase 99.9 1.8E-26 3.9E-31 211.1 19.4 290 3-326 2-331 (487)
7 TIGR02733 desat_CrtD C-3',4' d 99.9 8.7E-26 1.9E-30 208.5 22.0 274 4-309 1-331 (492)
8 TIGR02730 carot_isom carotene 99.9 1.6E-25 3.5E-30 206.5 19.5 274 5-310 1-325 (493)
9 PRK12416 protoporphyrinogen ox 99.9 6.1E-25 1.3E-29 201.6 22.7 268 6-309 3-312 (463)
10 PRK07233 hypothetical protein; 99.9 1.9E-24 4.1E-29 197.2 25.7 273 6-310 1-289 (434)
11 PRK07208 hypothetical protein; 99.9 1.6E-24 3.4E-29 199.8 23.3 274 1-309 1-315 (479)
12 COG1232 HemY Protoporphyrinoge 99.9 7.8E-25 1.7E-29 193.5 19.9 269 6-309 2-300 (444)
13 PLN02576 protoporphyrinogen ox 99.9 7.1E-24 1.5E-28 196.3 24.7 251 3-287 11-295 (496)
14 TIGR00562 proto_IX_ox protopor 99.9 7.5E-24 1.6E-28 194.6 22.9 266 5-308 3-312 (462)
15 PRK11883 protoporphyrinogen ox 99.9 1.1E-23 2.3E-28 193.1 20.9 271 5-309 1-307 (451)
16 KOG4405 GDP dissociation inhib 99.9 1.2E-23 2.5E-28 177.3 17.7 282 2-290 6-346 (547)
17 PLN02612 phytoene desaturase 99.9 3E-23 6.5E-28 193.1 21.7 287 4-319 93-412 (567)
18 TIGR02732 zeta_caro_desat caro 99.9 1.8E-21 3.9E-26 177.9 26.3 280 6-308 1-319 (474)
19 TIGR02731 phytoene_desat phyto 99.9 3E-21 6.5E-26 176.7 24.5 276 6-310 1-313 (453)
20 PLN02487 zeta-carotene desatur 99.9 7.2E-21 1.6E-25 175.3 22.9 260 5-287 76-358 (569)
21 COG1231 Monoamine oxidase [Ami 99.8 8.5E-21 1.9E-25 164.2 11.6 47 2-48 5-51 (450)
22 PLN02268 probable polyamine ox 99.8 1.5E-20 3.3E-25 171.3 13.5 235 5-287 1-250 (435)
23 PRK13977 myosin-cross-reactive 99.8 5.8E-19 1.3E-23 160.0 21.2 239 4-285 22-289 (576)
24 COG2907 Predicted NAD/FAD-bind 99.8 2E-18 4.4E-23 143.5 18.1 250 4-284 8-268 (447)
25 PLN02568 polyamine oxidase 99.8 2.9E-19 6.4E-24 164.7 14.4 75 1-95 2-83 (539)
26 PLN02676 polyamine oxidase 99.8 7.3E-19 1.6E-23 160.9 15.7 241 3-287 25-284 (487)
27 PLN02529 lysine-specific histo 99.8 5.7E-19 1.2E-23 166.1 14.8 236 4-287 160-405 (738)
28 PLN02328 lysine-specific histo 99.8 1.5E-18 3.3E-23 163.9 16.4 239 4-287 238-485 (808)
29 KOG0029 Amine oxidase [Seconda 99.8 7.2E-19 1.6E-23 159.4 11.5 70 3-91 14-84 (501)
30 TIGR03467 HpnE squalene-associ 99.8 4.9E-17 1.1E-21 147.7 23.0 259 18-310 1-287 (419)
31 PLN03000 amine oxidase 99.7 2.4E-17 5.3E-22 155.9 15.5 237 4-287 184-429 (881)
32 KOG4254 Phytoene desaturase [C 99.7 1.3E-17 2.8E-22 143.1 10.3 66 221-287 253-319 (561)
33 KOG1276 Protoporphyrinogen oxi 99.7 2.5E-16 5.4E-21 134.6 13.6 233 4-265 11-282 (491)
34 COG3349 Uncharacterized conser 99.7 1.4E-16 3E-21 140.8 11.1 242 5-277 1-263 (485)
35 KOG0685 Flavin-containing amin 99.7 2.2E-16 4.7E-21 137.1 10.9 69 3-91 20-91 (498)
36 PLN02976 amine oxidase 99.7 2E-15 4.3E-20 147.4 15.5 61 4-83 693-753 (1713)
37 PF01593 Amino_oxidase: Flavin 99.6 1.1E-15 2.5E-20 139.3 7.1 65 14-96 1-66 (450)
38 PF01266 DAO: FAD dependent ox 99.6 4E-15 8.6E-20 132.2 8.2 68 224-292 136-206 (358)
39 COG2081 Predicted flavoprotein 99.6 2.9E-14 6.2E-19 122.1 12.9 61 224-286 102-164 (408)
40 PF13450 NAD_binding_8: NAD(P) 99.6 7.8E-15 1.7E-19 96.4 7.2 55 9-83 1-55 (68)
41 COG0579 Predicted dehydrogenas 99.6 3.4E-14 7.3E-19 125.4 13.2 63 231-294 152-216 (429)
42 PF03486 HI0933_like: HI0933-l 99.6 1.6E-14 3.4E-19 128.6 10.8 62 224-286 100-163 (409)
43 PRK11728 hydroxyglutarate oxid 99.5 9.8E-14 2.1E-18 124.8 14.0 59 232-292 149-207 (393)
44 PRK00711 D-amino acid dehydrog 99.5 2E-13 4.2E-18 124.0 13.7 67 224-291 190-259 (416)
45 TIGR00031 UDP-GALP_mutase UDP- 99.5 9.1E-13 2E-17 115.9 16.8 95 5-121 2-96 (377)
46 PRK08274 tricarballylate dehyd 99.5 3.4E-13 7.3E-18 124.1 14.6 57 229-286 128-189 (466)
47 TIGR01377 soxA_mon sarcosine o 99.5 1.9E-13 4.1E-18 122.6 12.5 58 232-291 145-202 (380)
48 TIGR03329 Phn_aa_oxid putative 99.5 6.9E-13 1.5E-17 121.6 16.3 63 224-289 172-237 (460)
49 TIGR01373 soxB sarcosine oxida 99.5 2.6E-12 5.6E-17 116.3 16.4 59 232-290 183-241 (407)
50 PRK11101 glpA sn-glycerol-3-ph 99.5 1.4E-12 3.1E-17 121.5 15.0 61 232-293 149-215 (546)
51 PRK11259 solA N-methyltryptoph 99.5 4.4E-12 9.5E-17 113.6 17.2 57 232-290 149-205 (376)
52 COG3380 Predicted NAD/FAD-depe 99.4 5.4E-13 1.2E-17 107.9 9.7 44 6-49 3-46 (331)
53 PRK12409 D-amino acid dehydrog 99.4 4.1E-12 9E-17 115.1 16.2 59 232-291 197-260 (410)
54 PRK01747 mnmC bifunctional tRN 99.4 2.6E-12 5.5E-17 122.9 13.2 63 224-289 397-463 (662)
55 PTZ00383 malate:quinone oxidor 99.4 4.2E-12 9E-17 116.1 13.9 61 232-293 211-277 (497)
56 KOG2820 FAD-dependent oxidored 99.4 6E-12 1.3E-16 105.0 12.7 62 232-293 153-216 (399)
57 COG0562 Glf UDP-galactopyranos 99.4 5.6E-12 1.2E-16 104.5 11.3 120 4-145 1-121 (374)
58 PRK10157 putative oxidoreducta 99.4 1.3E-11 2.7E-16 112.1 14.6 53 234-287 110-162 (428)
59 PRK06481 fumarate reductase fl 99.4 6.8E-12 1.5E-16 116.1 12.6 42 3-44 60-101 (506)
60 PRK10015 oxidoreductase; Provi 99.4 1.2E-11 2.5E-16 112.2 13.8 53 234-287 110-162 (429)
61 TIGR03364 HpnW_proposed FAD de 99.4 1.2E-11 2.5E-16 110.4 13.5 52 232-289 145-197 (365)
62 COG0665 DadA Glycine/D-amino a 99.4 1.9E-11 4.1E-16 110.0 14.6 64 225-290 146-213 (387)
63 PRK13369 glycerol-3-phosphate 99.4 2E-11 4.3E-16 113.1 14.9 59 232-292 155-218 (502)
64 PRK12266 glpD glycerol-3-phosp 99.3 2.4E-11 5.2E-16 112.5 15.1 44 1-44 3-46 (508)
65 TIGR01320 mal_quin_oxido malat 99.3 5.1E-11 1.1E-15 109.2 15.7 63 232-294 178-245 (483)
66 PRK05257 malate:quinone oxidor 99.3 1.6E-10 3.5E-15 106.0 19.0 63 232-294 183-251 (494)
67 TIGR00292 thiazole biosynthesi 99.3 5E-11 1.1E-15 99.9 13.5 40 4-43 21-60 (254)
68 PRK07121 hypothetical protein; 99.3 6.3E-11 1.4E-15 109.7 15.3 57 231-287 176-237 (492)
69 PRK04176 ribulose-1,5-biphosph 99.3 3.9E-11 8.5E-16 100.8 12.6 40 4-43 25-64 (257)
70 TIGR01813 flavo_cyto_c flavocy 99.3 8.4E-11 1.8E-15 107.5 15.1 56 232-287 130-190 (439)
71 PF00890 FAD_binding_2: FAD bi 99.3 8E-11 1.7E-15 107.0 14.6 57 231-288 140-202 (417)
72 PLN02464 glycerol-3-phosphate 99.3 1.5E-10 3.1E-15 109.5 16.6 62 232-293 232-300 (627)
73 COG0578 GlpA Glycerol-3-phosph 99.3 3.5E-11 7.5E-16 108.7 11.8 61 232-294 164-230 (532)
74 PRK06175 L-aspartate oxidase; 99.3 4.6E-11 1E-15 108.4 12.7 42 1-43 1-42 (433)
75 COG0644 FixC Dehydrogenases (f 99.3 7.7E-11 1.7E-15 106.0 13.3 43 3-45 2-44 (396)
76 PF06100 Strep_67kDa_ant: Stre 99.3 6.5E-10 1.4E-14 98.7 18.1 215 4-261 2-236 (500)
77 PRK13339 malate:quinone oxidor 99.3 2.9E-10 6.4E-15 103.7 16.4 63 232-294 184-252 (497)
78 PRK12845 3-ketosteroid-delta-1 99.2 1.1E-10 2.4E-15 108.9 13.3 42 3-45 15-56 (564)
79 PF00732 GMC_oxred_N: GMC oxid 99.2 1.1E-10 2.4E-15 101.0 10.8 37 5-41 1-38 (296)
80 TIGR00275 flavoprotein, HI0933 99.2 1.9E-10 4.1E-15 103.5 12.5 55 231-287 104-158 (400)
81 PRK08773 2-octaprenyl-3-methyl 99.2 4.3E-10 9.3E-15 101.3 14.8 55 233-289 114-169 (392)
82 KOG2844 Dimethylglycine dehydr 99.2 5.4E-11 1.2E-15 107.5 8.4 62 232-294 187-248 (856)
83 PRK08958 sdhA succinate dehydr 99.2 2.5E-10 5.4E-15 107.3 13.2 55 232-286 143-203 (588)
84 PRK02106 choline dehydrogenase 99.2 9.4E-10 2E-14 103.4 16.7 36 2-37 3-39 (560)
85 PRK12834 putative FAD-binding 99.2 6.1E-10 1.3E-14 104.3 15.3 44 1-44 1-46 (549)
86 PRK06847 hypothetical protein; 99.2 2.8E-10 6.1E-15 101.9 12.6 55 233-289 108-163 (375)
87 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.9E-11 4E-16 96.2 4.3 42 4-45 30-71 (262)
88 PRK12844 3-ketosteroid-delta-1 99.2 3.1E-10 6.6E-15 106.2 13.2 42 3-44 5-46 (557)
89 PTZ00139 Succinate dehydrogena 99.2 5.8E-10 1.3E-14 105.4 14.3 54 232-285 166-225 (617)
90 PRK06134 putative FAD-binding 99.2 3E-09 6.6E-14 100.1 19.0 58 232-290 217-279 (581)
91 PRK09078 sdhA succinate dehydr 99.1 2.3E-10 5.1E-15 107.8 10.6 55 232-286 149-209 (598)
92 PF01946 Thi4: Thi4 family; PD 99.1 3.4E-11 7.4E-16 95.3 3.9 42 4-45 17-58 (230)
93 PRK06452 sdhA succinate dehydr 99.1 4.1E-10 8.8E-15 105.6 11.8 54 232-286 136-195 (566)
94 PLN00128 Succinate dehydrogena 99.1 3.1E-10 6.8E-15 107.2 11.1 55 232-286 187-247 (635)
95 PRK07057 sdhA succinate dehydr 99.1 4E-10 8.7E-15 106.1 11.7 55 232-286 148-208 (591)
96 PRK07804 L-aspartate oxidase; 99.1 7.9E-10 1.7E-14 103.2 13.4 41 3-43 15-55 (541)
97 TIGR01812 sdhA_frdA_Gneg succi 99.1 1.6E-09 3.5E-14 102.0 15.5 54 232-286 129-188 (566)
98 TIGR02485 CobZ_N-term precorri 99.1 1.3E-09 2.8E-14 99.4 14.2 61 226-286 117-180 (432)
99 PRK12843 putative FAD-binding 99.1 1.1E-09 2.5E-14 103.0 14.1 44 3-46 15-58 (578)
100 PRK07190 hypothetical protein; 99.1 1.4E-09 3E-14 100.2 14.3 39 1-39 1-40 (487)
101 PRK12835 3-ketosteroid-delta-1 99.1 1.8E-09 3.8E-14 101.6 15.3 42 2-43 9-50 (584)
102 PRK07573 sdhA succinate dehydr 99.1 9.9E-10 2.1E-14 104.2 13.6 38 4-41 35-72 (640)
103 PRK12837 3-ketosteroid-delta-1 99.1 4.2E-09 9.2E-14 97.8 17.2 41 3-44 6-46 (513)
104 PRK05945 sdhA succinate dehydr 99.1 5.4E-10 1.2E-14 105.1 11.2 54 232-286 135-194 (575)
105 TIGR00551 nadB L-aspartate oxi 99.1 1.5E-09 3.4E-14 100.2 14.0 55 232-287 128-187 (488)
106 TIGR01810 betA choline dehydro 99.1 3.5E-09 7.6E-14 99.0 16.5 61 232-293 193-260 (532)
107 TIGR02032 GG-red-SF geranylger 99.1 1.2E-09 2.6E-14 94.3 12.5 37 5-41 1-37 (295)
108 PRK08163 salicylate hydroxylas 99.1 9.5E-10 2.1E-14 99.3 12.1 39 1-39 1-39 (396)
109 PRK06069 sdhA succinate dehydr 99.1 7.3E-10 1.6E-14 104.3 11.6 43 1-43 1-47 (577)
110 PRK12842 putative succinate de 99.1 4.9E-09 1.1E-13 98.8 16.9 42 4-45 9-50 (574)
111 PLN02661 Putative thiazole syn 99.1 2.5E-09 5.4E-14 92.3 13.6 39 4-42 92-131 (357)
112 PRK06185 hypothetical protein; 99.1 2.8E-09 6E-14 96.6 14.8 37 2-38 4-40 (407)
113 TIGR01988 Ubi-OHases Ubiquinon 99.1 2E-09 4.3E-14 96.8 13.7 55 232-288 106-162 (385)
114 PRK12839 hypothetical protein; 99.1 7.5E-09 1.6E-13 97.0 17.9 43 3-45 7-49 (572)
115 PRK07803 sdhA succinate dehydr 99.1 2.9E-09 6.3E-14 100.9 15.0 39 4-42 8-46 (626)
116 PRK08205 sdhA succinate dehydr 99.1 6.1E-10 1.3E-14 104.9 10.1 55 232-286 140-203 (583)
117 PRK08641 sdhA succinate dehydr 99.1 4.7E-09 1E-13 98.9 15.6 41 3-43 2-42 (589)
118 PRK07395 L-aspartate oxidase; 99.1 1.8E-09 4E-14 100.7 12.7 55 232-286 134-194 (553)
119 PRK06184 hypothetical protein; 99.1 1.1E-09 2.4E-14 101.7 11.0 38 2-39 1-38 (502)
120 PRK08401 L-aspartate oxidase; 99.1 5.6E-09 1.2E-13 95.9 15.3 54 232-287 120-173 (466)
121 PRK09126 hypothetical protein; 99.1 2.9E-09 6.3E-14 96.0 13.3 38 1-39 1-38 (392)
122 PRK07333 2-octaprenyl-6-methox 99.1 2.3E-09 5E-14 97.0 12.6 56 232-289 111-167 (403)
123 PRK05714 2-octaprenyl-3-methyl 99.1 2.3E-09 5E-14 97.0 12.5 55 233-289 113-168 (405)
124 PRK07045 putative monooxygenas 99.0 2.8E-09 6.1E-14 95.9 12.7 39 1-39 1-40 (388)
125 PRK08071 L-aspartate oxidase; 99.0 3.2E-09 6.9E-14 98.5 13.3 40 3-43 2-41 (510)
126 PRK08275 putative oxidoreducta 99.0 4.1E-09 8.9E-14 98.8 13.9 55 232-286 137-197 (554)
127 PRK07608 ubiquinone biosynthes 99.0 4.3E-09 9.3E-14 94.8 13.4 37 3-39 4-40 (388)
128 PRK06854 adenylylsulfate reduc 99.0 3.7E-09 8E-14 99.9 13.3 54 232-286 132-192 (608)
129 PRK06834 hypothetical protein; 99.0 4.9E-09 1.1E-13 96.7 13.7 54 234-289 102-156 (488)
130 PRK07512 L-aspartate oxidase; 99.0 2.9E-09 6.3E-14 98.8 12.1 54 232-286 136-194 (513)
131 COG0654 UbiH 2-polyprenyl-6-me 99.0 6.6E-09 1.4E-13 93.4 13.8 55 232-287 104-160 (387)
132 PLN02815 L-aspartate oxidase 99.0 2.8E-09 6E-14 100.0 11.1 39 4-43 29-67 (594)
133 PTZ00306 NADH-dependent fumara 99.0 2.9E-09 6.4E-14 107.4 12.0 41 4-44 409-449 (1167)
134 TIGR01984 UbiH 2-polyprenyl-6- 99.0 6.9E-09 1.5E-13 93.2 13.3 55 232-288 105-161 (382)
135 PRK05192 tRNA uridine 5-carbox 99.0 9.8E-09 2.1E-13 95.0 14.0 42 1-42 1-43 (618)
136 PRK08626 fumarate reductase fl 99.0 6.8E-09 1.5E-13 98.7 13.1 54 232-286 158-217 (657)
137 PRK06263 sdhA succinate dehydr 99.0 2.1E-09 4.5E-14 100.6 9.6 55 232-286 134-194 (543)
138 PRK08244 hypothetical protein; 99.0 1.3E-08 2.7E-13 94.5 14.0 35 4-38 2-36 (493)
139 PRK08243 4-hydroxybenzoate 3-m 98.9 2.5E-08 5.4E-13 89.8 14.5 35 4-38 2-36 (392)
140 TIGR02462 pyranose_ox pyranose 98.9 9.4E-08 2E-12 88.2 17.7 37 5-41 1-37 (544)
141 PRK07588 hypothetical protein; 98.9 1.9E-08 4E-13 90.7 12.7 34 5-38 1-34 (391)
142 TIGR01176 fum_red_Fp fumarate 98.9 7E-09 1.5E-13 97.4 10.2 54 232-286 132-192 (580)
143 TIGR01811 sdhA_Bsu succinate d 98.9 1.4E-08 2.9E-13 95.9 12.2 35 7-41 1-35 (603)
144 PRK09231 fumarate reductase fl 98.9 2.7E-08 5.9E-13 93.7 13.8 40 4-43 4-45 (582)
145 PLN02697 lycopene epsilon cycl 98.9 2.2E-08 4.8E-13 92.4 12.5 57 232-290 192-249 (529)
146 PRK06183 mhpA 3-(3-hydroxyphen 98.9 2.6E-08 5.6E-13 93.4 13.2 37 4-40 10-46 (538)
147 COG3573 Predicted oxidoreducta 98.9 8.7E-08 1.9E-12 80.5 14.3 39 4-42 5-45 (552)
148 COG2303 BetA Choline dehydroge 98.9 6.8E-08 1.5E-12 90.0 15.3 36 1-36 4-39 (542)
149 PRK09077 L-aspartate oxidase; 98.9 4.3E-08 9.4E-13 91.6 13.7 39 4-43 8-46 (536)
150 PRK08132 FAD-dependent oxidore 98.9 9.5E-08 2.1E-12 89.8 16.0 37 3-39 22-58 (547)
151 TIGR03378 glycerol3P_GlpB glyc 98.9 1.7E-07 3.7E-12 83.3 16.5 60 232-292 263-326 (419)
152 KOG0042 Glycerol-3-phosphate d 98.8 2.6E-09 5.7E-14 94.6 3.9 63 232-294 224-292 (680)
153 PRK05329 anaerobic glycerol-3- 98.8 8.4E-08 1.8E-12 86.1 13.6 54 233-287 260-316 (422)
154 PLN02172 flavin-containing mon 98.8 4.3E-09 9.3E-14 96.0 5.1 43 2-44 8-50 (461)
155 PRK06475 salicylate hydroxylas 98.8 7.6E-08 1.6E-12 87.0 12.9 35 5-39 3-37 (400)
156 PRK05249 soluble pyridine nucl 98.8 6.1E-09 1.3E-13 95.9 5.1 45 2-46 3-47 (461)
157 PRK06116 glutathione reductase 98.8 5.6E-09 1.2E-13 95.8 4.7 43 1-44 1-43 (450)
158 TIGR02061 aprA adenosine phosp 98.8 9.1E-08 2E-12 90.0 12.6 56 232-287 126-189 (614)
159 PRK06370 mercuric reductase; V 98.8 8.4E-09 1.8E-13 94.9 5.1 43 1-44 2-44 (463)
160 PF01134 GIDA: Glucose inhibit 98.7 1.7E-07 3.6E-12 82.4 12.6 52 234-287 97-150 (392)
161 PRK06115 dihydrolipoamide dehy 98.7 8.8E-09 1.9E-13 94.7 4.7 43 3-45 2-44 (466)
162 PRK06467 dihydrolipoamide dehy 98.7 1.2E-08 2.5E-13 94.0 5.1 45 1-45 1-45 (471)
163 PRK05976 dihydrolipoamide dehy 98.7 1.3E-08 2.8E-13 93.9 5.1 44 1-45 1-44 (472)
164 PRK09897 hypothetical protein; 98.7 2.2E-07 4.7E-12 85.9 12.9 38 6-43 3-43 (534)
165 PRK07251 pyridine nucleotide-d 98.7 1.3E-08 2.8E-13 93.1 4.8 42 3-44 2-44 (438)
166 PRK07818 dihydrolipoamide dehy 98.7 1.7E-08 3.6E-13 93.0 5.2 45 1-46 1-45 (466)
167 PRK07364 2-octaprenyl-6-methox 98.7 1.6E-08 3.5E-13 91.8 5.0 38 2-39 16-53 (415)
168 PRK08010 pyridine nucleotide-d 98.7 1.5E-08 3.3E-13 92.7 4.8 57 232-290 199-255 (441)
169 PRK07494 2-octaprenyl-6-methox 98.7 1.8E-08 3.9E-13 90.7 5.1 38 2-39 5-42 (388)
170 PF01494 FAD_binding_3: FAD bi 98.7 1.3E-08 2.9E-13 90.2 4.2 56 233-289 112-172 (356)
171 KOG1399 Flavin-containing mono 98.7 1.6E-08 3.4E-13 90.9 4.5 41 2-42 4-44 (448)
172 PF06039 Mqo: Malate:quinone o 98.7 1.5E-07 3.2E-12 83.1 10.1 56 231-287 180-242 (488)
173 PLN02785 Protein HOTHEAD 98.7 5.5E-07 1.2E-11 84.6 14.3 34 4-38 55-88 (587)
174 TIGR01421 gluta_reduc_1 glutat 98.7 2.2E-08 4.7E-13 91.7 4.7 57 233-290 208-266 (450)
175 PF04820 Trp_halogenase: Trypt 98.7 2.3E-07 5.1E-12 84.7 11.4 55 232-287 154-209 (454)
176 PRK13800 putative oxidoreducta 98.7 3.9E-07 8.5E-12 90.2 13.7 35 4-38 13-47 (897)
177 PRK08850 2-octaprenyl-6-methox 98.7 2.2E-08 4.8E-13 90.6 4.7 36 1-36 1-36 (405)
178 KOG2852 Possible oxidoreductas 98.7 2.8E-07 6.2E-12 75.8 10.4 40 4-43 10-55 (380)
179 TIGR01424 gluta_reduc_2 glutat 98.7 2.3E-08 4.9E-13 91.6 4.6 41 4-45 2-42 (446)
180 COG2072 TrkA Predicted flavopr 98.6 2.9E-08 6.2E-13 90.2 4.9 46 2-47 6-52 (443)
181 PF13454 NAD_binding_9: FAD-NA 98.6 7.2E-07 1.6E-11 69.3 12.1 31 8-38 1-36 (156)
182 PF12831 FAD_oxidored: FAD dep 98.6 2.7E-08 5.9E-13 90.4 4.6 40 6-45 1-40 (428)
183 PRK08013 oxidoreductase; Provi 98.6 3.1E-08 6.7E-13 89.5 5.0 36 3-38 2-37 (400)
184 KOG2404 Fumarate reductase, fl 98.6 3.7E-07 8E-12 76.3 10.7 40 6-45 11-50 (477)
185 TIGR03143 AhpF_homolog putativ 98.6 3.3E-08 7.2E-13 92.7 5.0 43 1-44 1-43 (555)
186 TIGR01350 lipoamide_DH dihydro 98.6 3.4E-08 7.4E-13 91.0 4.9 41 4-45 1-41 (461)
187 PRK06292 dihydrolipoamide dehy 98.6 3.8E-08 8.2E-13 90.6 5.0 41 3-44 2-42 (460)
188 PRK08849 2-octaprenyl-3-methyl 98.6 3.8E-08 8.3E-13 88.4 4.7 36 1-37 1-36 (384)
189 PRK06327 dihydrolipoamide dehy 98.6 4.5E-08 9.8E-13 90.3 5.1 46 1-46 1-52 (475)
190 KOG2665 Predicted FAD-dependen 98.6 1.9E-07 4.2E-12 77.8 8.1 46 3-48 47-94 (453)
191 PRK06416 dihydrolipoamide dehy 98.6 4.5E-08 9.8E-13 90.1 4.8 42 3-45 3-44 (462)
192 TIGR03315 Se_ygfK putative sel 98.6 5E-08 1.1E-12 95.5 5.0 42 4-45 537-578 (1012)
193 PRK07236 hypothetical protein; 98.6 5.3E-08 1.2E-12 87.6 4.8 36 3-38 5-40 (386)
194 PRK12779 putative bifunctional 98.6 5.1E-08 1.1E-12 96.0 5.0 41 4-44 306-346 (944)
195 TIGR02023 BchP-ChlP geranylger 98.6 5.3E-08 1.2E-12 87.6 4.6 32 5-36 1-32 (388)
196 PLN00093 geranylgeranyl diphos 98.6 5.8E-08 1.2E-12 88.5 4.5 34 4-37 39-72 (450)
197 PF13738 Pyr_redox_3: Pyridine 98.6 6.2E-08 1.4E-12 78.9 4.2 37 8-44 1-38 (203)
198 COG0492 TrxB Thioredoxin reduc 98.6 4.8E-08 1E-12 83.9 3.6 46 2-47 1-46 (305)
199 TIGR00136 gidA glucose-inhibit 98.6 8.2E-07 1.8E-11 82.3 11.8 38 5-42 1-38 (617)
200 TIGR02028 ChlP geranylgeranyl 98.6 7.4E-08 1.6E-12 86.8 5.0 36 5-40 1-36 (398)
201 PRK14694 putative mercuric red 98.5 7.6E-08 1.7E-12 88.7 5.0 57 232-290 218-274 (468)
202 TIGR01292 TRX_reduct thioredox 98.5 7.8E-08 1.7E-12 83.3 4.6 39 5-44 1-39 (300)
203 COG1148 HdrA Heterodisulfide r 98.5 6.8E-08 1.5E-12 84.9 4.1 43 5-47 125-167 (622)
204 PRK12831 putative oxidoreducta 98.5 8.9E-08 1.9E-12 87.8 5.1 41 4-44 140-180 (464)
205 PTZ00052 thioredoxin reductase 98.5 9.3E-08 2E-12 88.6 4.9 56 233-290 223-279 (499)
206 TIGR02360 pbenz_hydroxyl 4-hyd 98.5 8.3E-08 1.8E-12 86.3 4.4 35 4-38 2-36 (390)
207 PRK05732 2-octaprenyl-6-methox 98.5 8.6E-08 1.9E-12 86.5 4.5 34 3-36 2-38 (395)
208 PRK08020 ubiF 2-octaprenyl-3-m 98.5 9.2E-08 2E-12 86.2 4.5 35 3-37 4-38 (391)
209 COG1249 Lpd Pyruvate/2-oxoglut 98.5 1.1E-07 2.3E-12 85.9 4.8 46 1-46 1-46 (454)
210 PRK06753 hypothetical protein; 98.5 9.8E-08 2.1E-12 85.5 4.4 36 5-40 1-36 (373)
211 KOG2415 Electron transfer flav 98.5 9.2E-08 2E-12 82.6 3.8 45 3-47 75-125 (621)
212 TIGR02053 MerA mercuric reduct 98.5 1.2E-07 2.6E-12 87.3 4.8 39 5-44 1-39 (463)
213 TIGR01790 carotene-cycl lycope 98.5 1.3E-07 2.7E-12 85.2 4.7 37 6-42 1-37 (388)
214 TIGR03197 MnmC_Cterm tRNA U-34 98.5 9.8E-07 2.1E-11 79.2 10.1 56 232-290 135-191 (381)
215 COG2509 Uncharacterized FAD-de 98.5 4.4E-06 9.6E-11 73.4 13.5 59 231-290 172-231 (486)
216 PRK09853 putative selenate red 98.5 1.6E-07 3.5E-12 91.7 5.1 42 4-45 539-580 (1019)
217 PRK13748 putative mercuric red 98.5 1.5E-07 3.2E-12 88.9 4.8 56 233-290 311-366 (561)
218 PLN02852 ferredoxin-NADP+ redu 98.5 1.9E-07 4.1E-12 85.3 4.9 42 4-45 26-69 (491)
219 PRK07843 3-ketosteroid-delta-1 98.5 1.9E-07 4E-12 87.7 5.0 42 3-44 6-47 (557)
220 KOG1298 Squalene monooxygenase 98.5 7.7E-07 1.7E-11 76.2 8.2 33 4-36 45-77 (509)
221 PTZ00058 glutathione reductase 98.5 1.8E-07 3.9E-12 87.3 4.8 42 3-45 47-88 (561)
222 PRK07538 hypothetical protein; 98.4 1.7E-07 3.7E-12 85.1 4.5 35 5-39 1-35 (413)
223 TIGR02352 thiamin_ThiO glycine 98.4 2.4E-06 5.2E-11 75.3 11.7 60 232-292 137-196 (337)
224 PRK06126 hypothetical protein; 98.4 2E-07 4.2E-12 87.8 5.0 35 4-38 7-41 (545)
225 PF00743 FMO-like: Flavin-bind 98.4 1.7E-07 3.7E-12 86.9 4.4 40 5-44 2-41 (531)
226 PRK06617 2-octaprenyl-6-methox 98.4 1.7E-07 3.8E-12 83.8 4.3 33 5-37 2-34 (374)
227 PLN02985 squalene monooxygenas 98.4 2.4E-07 5.1E-12 85.9 5.3 36 3-38 42-77 (514)
228 TIGR01989 COQ6 Ubiquinone bios 98.4 1.9E-07 4.1E-12 85.3 4.5 33 5-37 1-37 (437)
229 PRK14727 putative mercuric red 98.4 1.9E-07 4.1E-12 86.3 4.5 43 3-45 15-57 (479)
230 PRK09754 phenylpropionate diox 98.4 6.9E-06 1.5E-10 74.1 14.3 54 234-290 188-242 (396)
231 TIGR01316 gltA glutamate synth 98.4 2.8E-07 6E-12 84.4 5.1 40 4-43 133-172 (449)
232 KOG2614 Kynurenine 3-monooxyge 98.4 2.9E-07 6.2E-12 79.8 4.8 35 4-38 2-36 (420)
233 PRK12775 putative trifunctiona 98.4 2.4E-07 5.3E-12 92.1 4.9 41 4-44 430-470 (1006)
234 PLN02507 glutathione reductase 98.4 2.8E-07 6E-12 85.4 5.0 56 233-290 245-301 (499)
235 PRK05868 hypothetical protein; 98.4 2.9E-07 6.3E-12 82.2 4.8 34 6-39 3-36 (372)
236 PRK09564 coenzyme A disulfide 98.4 8.8E-06 1.9E-10 74.7 14.5 57 232-290 191-247 (444)
237 PLN02463 lycopene beta cyclase 98.4 2.8E-07 6.2E-12 83.7 4.6 35 4-38 28-62 (447)
238 PRK12769 putative oxidoreducta 98.4 3.1E-07 6.8E-12 88.0 5.1 41 4-44 327-367 (654)
239 PRK08294 phenol 2-monooxygenas 98.4 3E-07 6.6E-12 87.4 4.9 38 1-38 29-67 (634)
240 TIGR01789 lycopene_cycl lycope 98.4 3.1E-07 6.8E-12 81.8 4.7 37 6-42 1-39 (370)
241 PTZ00367 squalene epoxidase; P 98.4 3.1E-07 6.8E-12 85.7 4.6 35 3-37 32-66 (567)
242 PRK10262 thioredoxin reductase 98.4 3.3E-07 7.1E-12 80.3 4.5 42 3-45 5-46 (321)
243 TIGR01423 trypano_reduc trypan 98.4 3.5E-07 7.5E-12 84.3 4.8 58 232-290 231-289 (486)
244 PRK11445 putative oxidoreducta 98.4 3.2E-07 7E-12 81.3 4.3 34 5-39 2-35 (351)
245 PLN02927 antheraxanthin epoxid 98.4 3.6E-07 7.8E-12 86.1 4.6 35 3-37 80-114 (668)
246 PRK12810 gltD glutamate syntha 98.4 4.8E-07 1E-11 83.4 5.1 40 4-43 143-182 (471)
247 PRK12778 putative bifunctional 98.4 4.7E-07 1E-11 88.2 5.2 41 4-44 431-471 (752)
248 TIGR03219 salicylate_mono sali 98.4 4.3E-07 9.4E-12 82.5 4.7 36 5-40 1-37 (414)
249 TIGR01372 soxA sarcosine oxida 98.3 4.3E-07 9.4E-12 90.7 5.0 42 4-45 163-204 (985)
250 PLN02546 glutathione reductase 98.3 5.1E-07 1.1E-11 84.3 4.9 43 4-46 79-130 (558)
251 PRK05335 tRNA (uracil-5-)-meth 98.3 5.6E-07 1.2E-11 79.9 4.7 35 5-39 3-37 (436)
252 PTZ00188 adrenodoxin reductase 98.3 5.8E-07 1.2E-11 81.2 4.8 43 4-46 39-82 (506)
253 COG4716 Myosin-crossreactive a 98.3 1.9E-05 4.1E-10 67.8 13.5 41 5-45 23-67 (587)
254 COG0029 NadB Aspartate oxidase 98.3 1.3E-05 2.9E-10 71.3 13.1 63 223-286 123-193 (518)
255 PRK06567 putative bifunctional 98.3 6E-07 1.3E-11 86.9 4.9 39 4-42 383-421 (1028)
256 PRK11749 dihydropyrimidine deh 98.3 7.3E-07 1.6E-11 82.0 5.1 40 4-43 140-179 (457)
257 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 6.6E-07 1.4E-11 79.9 4.4 37 5-41 1-37 (433)
258 PRK15317 alkyl hydroperoxide r 98.3 6.8E-07 1.5E-11 83.4 4.7 39 4-44 211-249 (517)
259 TIGR01318 gltD_gamma_fam gluta 98.3 7.9E-07 1.7E-11 81.7 5.0 41 4-44 141-181 (467)
260 KOG1238 Glucose dehydrogenase/ 98.3 2.8E-05 6.1E-10 71.6 14.5 37 3-39 56-93 (623)
261 PRK12809 putative oxidoreducta 98.3 8.4E-07 1.8E-11 84.7 5.1 41 4-44 310-350 (639)
262 PF05834 Lycopene_cycl: Lycope 98.3 7.8E-07 1.7E-11 79.5 4.5 34 6-39 1-36 (374)
263 PRK12814 putative NADPH-depend 98.3 8.7E-07 1.9E-11 84.7 5.0 41 4-44 193-233 (652)
264 TIGR03140 AhpF alkyl hydropero 98.3 9.5E-07 2.1E-11 82.3 4.9 39 4-44 212-250 (515)
265 PTZ00153 lipoamide dehydrogena 98.3 9.2E-07 2E-11 83.8 4.9 42 4-45 116-158 (659)
266 COG1053 SdhA Succinate dehydro 98.2 1.1E-06 2.3E-11 81.8 4.8 44 2-45 4-47 (562)
267 PRK06996 hypothetical protein; 98.2 1.3E-06 2.9E-11 78.8 4.9 36 3-38 10-49 (398)
268 PF07992 Pyr_redox_2: Pyridine 98.2 1.5E-06 3.3E-11 70.6 4.5 33 6-38 1-33 (201)
269 COG0493 GltD NADPH-dependent g 98.2 1.4E-06 3E-11 78.9 4.0 42 5-46 124-165 (457)
270 TIGR01438 TGR thioredoxin and 98.2 1.8E-06 3.9E-11 79.8 4.8 56 233-290 221-280 (484)
271 TIGR01317 GOGAT_sm_gam glutama 98.2 2.1E-06 4.5E-11 79.4 4.9 40 5-44 144-183 (485)
272 PF00070 Pyr_redox: Pyridine n 98.2 3.9E-06 8.5E-11 57.2 4.9 35 6-40 1-35 (80)
273 PRK12770 putative glutamate sy 98.1 3.3E-06 7.1E-11 75.0 5.1 41 4-44 18-58 (352)
274 COG3075 GlpB Anaerobic glycero 98.1 2.7E-06 5.8E-11 71.6 4.1 56 233-289 259-318 (421)
275 KOG0399 Glutamate synthase [Am 98.1 2.6E-06 5.7E-11 81.9 4.2 40 5-44 1786-1825(2142)
276 PRK14989 nitrite reductase sub 98.1 0.00015 3.2E-09 71.3 16.1 58 234-291 189-247 (847)
277 PRK12771 putative glutamate sy 98.1 4.2E-06 9.1E-11 79.0 5.2 40 4-43 137-176 (564)
278 PRK08255 salicylyl-CoA 5-hydro 98.1 3.7E-06 8E-11 82.0 4.5 34 5-38 1-36 (765)
279 PRK06912 acoL dihydrolipoamide 98.1 4.7E-06 1E-10 76.7 5.0 56 233-290 212-269 (458)
280 KOG2960 Protein involved in th 98.0 1.7E-06 3.7E-11 68.1 1.6 42 4-45 76-119 (328)
281 PRK07845 flavoprotein disulfid 98.0 5.1E-06 1.1E-10 76.5 4.9 56 233-290 219-275 (466)
282 TIGR03377 glycerol3P_GlpA glyc 98.0 7.8E-05 1.7E-09 69.7 12.4 61 232-293 128-194 (516)
283 PRK13984 putative oxidoreducta 98.0 7.1E-06 1.5E-10 78.2 5.1 40 4-43 283-322 (604)
284 KOG1335 Dihydrolipoamide dehyd 98.0 7.1E-06 1.5E-10 70.5 4.2 44 3-46 38-81 (506)
285 COG4529 Uncharacterized protei 98.0 8.3E-05 1.8E-09 66.4 10.7 39 5-43 2-43 (474)
286 PRK07846 mycothione reductase; 97.9 1.6E-05 3.5E-10 72.9 4.7 54 234-290 209-263 (451)
287 KOG2853 Possible oxidoreductas 97.9 1.3E-05 2.8E-10 67.9 3.5 36 3-38 85-124 (509)
288 TIGR03452 mycothione_red mycot 97.8 1.9E-05 4E-10 72.5 4.6 54 234-290 212-266 (452)
289 PRK05249 soluble pyridine nucl 97.6 0.00072 1.6E-08 62.4 11.7 47 242-290 226-273 (461)
290 PRK13512 coenzyme A disulfide 97.6 7.3E-05 1.6E-09 68.4 4.5 52 233-290 190-242 (438)
291 KOG1800 Ferredoxin/adrenodoxin 97.6 9.8E-05 2.1E-09 63.6 4.6 43 4-46 20-64 (468)
292 COG0445 GidA Flavin-dependent 97.5 7.9E-05 1.7E-09 67.3 3.8 40 1-40 1-41 (621)
293 PF13434 K_oxygenase: L-lysine 97.5 0.00016 3.6E-09 63.5 5.2 35 4-38 2-37 (341)
294 PTZ00318 NADH dehydrogenase-li 97.5 0.00015 3.3E-09 66.0 4.8 53 233-291 229-282 (424)
295 PRK05675 sdhA succinate dehydr 97.4 0.0014 3E-08 62.1 10.6 55 232-286 126-186 (570)
296 COG0446 HcaD Uncharacterized N 97.3 0.00022 4.8E-09 64.6 4.2 40 5-44 137-176 (415)
297 KOG4716 Thioredoxin reductase 97.3 0.00027 5.8E-09 60.0 3.6 33 3-35 18-50 (503)
298 KOG0405 Pyridine nucleotide-di 97.3 0.00032 6.9E-09 59.8 4.1 43 3-45 19-61 (478)
299 COG1206 Gid NAD(FAD)-utilizing 97.2 0.00032 6.9E-09 59.4 3.9 38 4-41 3-40 (439)
300 PF01210 NAD_Gly3P_dh_N: NAD-d 97.2 0.00047 1E-08 53.6 4.0 32 6-37 1-32 (157)
301 PRK04965 NADH:flavorubredoxin 97.1 0.00058 1.3E-08 61.3 4.7 55 234-290 185-240 (377)
302 TIGR03169 Nterm_to_SelD pyridi 97.1 0.0006 1.3E-08 60.9 4.4 52 233-290 192-244 (364)
303 KOG2311 NAD/FAD-utilizing prot 97.0 0.00068 1.5E-08 60.3 3.3 43 3-45 27-70 (679)
304 COG1252 Ndh NADH dehydrogenase 96.9 0.0011 2.5E-08 58.9 4.6 54 232-291 209-264 (405)
305 KOG3855 Monooxygenase involved 96.9 0.001 2.2E-08 58.2 3.9 33 4-36 36-72 (481)
306 PF03721 UDPG_MGDP_dh_N: UDP-g 96.8 0.0013 2.8E-08 52.5 3.8 33 5-37 1-33 (185)
307 PF02737 3HCDH_N: 3-hydroxyacy 96.8 0.0017 3.6E-08 51.7 4.2 32 6-37 1-32 (180)
308 PRK09754 phenylpropionate diox 96.8 0.0015 3.3E-08 59.0 4.3 38 5-42 145-182 (396)
309 PRK02705 murD UDP-N-acetylmura 96.8 0.0016 3.4E-08 60.2 4.3 34 6-39 2-35 (459)
310 PF07156 Prenylcys_lyase: Pren 96.7 0.0083 1.8E-07 53.2 8.3 111 163-287 68-185 (368)
311 PRK01438 murD UDP-N-acetylmura 96.7 0.0021 4.5E-08 59.7 4.6 34 5-38 17-50 (480)
312 PF02558 ApbA: Ketopantoate re 96.7 0.0025 5.4E-08 49.1 4.2 29 7-35 1-29 (151)
313 KOG0404 Thioredoxin reductase 96.6 0.0017 3.7E-08 52.1 3.1 52 4-55 8-63 (322)
314 PRK07251 pyridine nucleotide-d 96.6 0.0027 6E-08 58.2 4.7 38 5-42 158-195 (438)
315 PRK06249 2-dehydropantoate 2-r 96.6 0.003 6.4E-08 55.1 4.7 37 1-37 1-38 (313)
316 KOG3923 D-aspartate oxidase [A 96.6 0.0018 4E-08 54.1 3.1 35 3-37 2-43 (342)
317 COG3634 AhpF Alkyl hydroperoxi 96.6 0.0013 2.8E-08 56.3 2.2 39 3-43 210-248 (520)
318 PRK07530 3-hydroxybutyryl-CoA 96.6 0.0033 7.2E-08 54.3 4.7 37 1-37 1-37 (292)
319 PRK07819 3-hydroxybutyryl-CoA 96.5 0.0029 6.3E-08 54.3 4.2 38 1-38 1-39 (286)
320 PRK05976 dihydrolipoamide dehy 96.5 0.0028 6.1E-08 58.7 4.3 37 5-41 181-217 (472)
321 PRK04965 NADH:flavorubredoxin 96.5 0.0034 7.3E-08 56.4 4.5 37 5-41 142-178 (377)
322 KOG2755 Oxidoreductase [Genera 96.5 0.0015 3.2E-08 53.7 2.0 37 6-42 1-39 (334)
323 PRK06129 3-hydroxyacyl-CoA deh 96.4 0.0035 7.5E-08 54.6 3.8 32 6-37 4-35 (308)
324 TIGR02374 nitri_red_nirB nitri 96.4 0.0033 7.2E-08 61.8 4.1 55 234-290 184-239 (785)
325 TIGR01350 lipoamide_DH dihydro 96.4 0.004 8.8E-08 57.5 4.4 37 5-41 171-207 (461)
326 TIGR02053 MerA mercuric reduct 96.4 0.0041 8.9E-08 57.5 4.3 37 5-41 167-203 (463)
327 COG0569 TrkA K+ transport syst 96.3 0.0043 9.4E-08 51.2 3.8 33 5-37 1-33 (225)
328 PRK14618 NAD(P)H-dependent gly 96.3 0.0057 1.2E-07 53.7 4.7 37 1-37 1-37 (328)
329 PRK06467 dihydrolipoamide dehy 96.3 0.0048 1E-07 57.1 4.4 37 5-41 175-211 (471)
330 PRK07846 mycothione reductase; 96.3 0.0051 1.1E-07 56.5 4.4 36 5-40 167-202 (451)
331 TIGR01421 gluta_reduc_1 glutat 96.3 0.0051 1.1E-07 56.6 4.3 37 5-41 167-203 (450)
332 PRK06912 acoL dihydrolipoamide 96.3 0.0053 1.2E-07 56.6 4.5 37 5-41 171-207 (458)
333 COG3486 IucD Lysine/ornithine 96.3 0.049 1.1E-06 48.0 9.9 37 1-37 2-39 (436)
334 PRK06370 mercuric reductase; V 96.2 0.0059 1.3E-07 56.4 4.7 38 5-42 172-209 (463)
335 PRK06115 dihydrolipoamide dehy 96.2 0.0058 1.3E-07 56.5 4.5 37 5-41 175-211 (466)
336 COG1004 Ugd Predicted UDP-gluc 96.2 0.005 1.1E-07 53.9 3.8 33 5-37 1-33 (414)
337 PRK05708 2-dehydropantoate 2-r 96.2 0.0063 1.4E-07 52.8 4.2 33 4-36 2-34 (305)
338 PRK06416 dihydrolipoamide dehy 96.2 0.0062 1.3E-07 56.3 4.4 37 5-41 173-209 (462)
339 PRK13512 coenzyme A disulfide 96.1 0.0061 1.3E-07 55.9 4.2 37 5-41 149-185 (438)
340 TIGR03385 CoA_CoA_reduc CoA-di 96.1 0.0066 1.4E-07 55.5 4.3 35 5-39 138-172 (427)
341 COG1249 Lpd Pyruvate/2-oxoglut 96.1 0.0074 1.6E-07 55.0 4.6 38 5-42 174-211 (454)
342 PRK07066 3-hydroxybutyryl-CoA 96.1 0.0077 1.7E-07 52.4 4.4 33 5-37 8-40 (321)
343 PRK07818 dihydrolipoamide dehy 96.1 0.0069 1.5E-07 56.0 4.4 37 5-41 173-209 (466)
344 PRK06292 dihydrolipoamide dehy 96.1 0.0076 1.6E-07 55.7 4.6 37 5-41 170-206 (460)
345 PRK08293 3-hydroxybutyryl-CoA 96.1 0.0077 1.7E-07 51.8 4.3 33 5-37 4-36 (287)
346 PRK14106 murD UDP-N-acetylmura 96.1 0.0084 1.8E-07 55.2 4.8 34 4-37 5-38 (450)
347 PF01262 AlaDh_PNT_C: Alanine 96.1 0.0092 2E-07 46.9 4.3 33 4-36 20-52 (168)
348 TIGR03862 flavo_PP4765 unchara 96.0 0.022 4.7E-07 50.7 7.0 59 224-286 77-138 (376)
349 PRK06522 2-dehydropantoate 2-r 96.0 0.0076 1.6E-07 52.3 4.1 31 6-36 2-32 (304)
350 PLN02545 3-hydroxybutyryl-CoA 96.0 0.01 2.2E-07 51.3 4.7 37 1-37 1-37 (295)
351 PRK08229 2-dehydropantoate 2-r 96.0 0.0077 1.7E-07 53.2 4.0 32 5-36 3-34 (341)
352 PRK06327 dihydrolipoamide dehy 95.9 0.0092 2E-07 55.3 4.4 37 5-41 184-220 (475)
353 PRK12921 2-dehydropantoate 2-r 95.9 0.0087 1.9E-07 52.0 4.0 30 6-35 2-31 (305)
354 PRK09260 3-hydroxybutyryl-CoA 95.9 0.0094 2E-07 51.3 4.0 32 6-37 3-34 (288)
355 PRK11064 wecC UDP-N-acetyl-D-m 95.9 0.0096 2.1E-07 54.0 4.1 34 4-37 3-36 (415)
356 PRK07845 flavoprotein disulfid 95.8 0.013 2.7E-07 54.3 4.8 38 5-42 178-215 (466)
357 TIGR03452 mycothione_red mycot 95.8 0.011 2.3E-07 54.5 4.3 37 5-41 170-206 (452)
358 cd05292 LDH_2 A subgroup of L- 95.8 0.012 2.6E-07 51.1 4.3 32 6-37 2-35 (308)
359 TIGR03140 AhpF alkyl hydropero 95.8 0.011 2.4E-07 55.4 4.2 36 5-40 353-388 (515)
360 PRK04148 hypothetical protein; 95.8 0.01 2.2E-07 44.2 3.1 33 5-38 18-50 (134)
361 TIGR02374 nitri_red_nirB nitri 95.8 0.011 2.4E-07 58.2 4.3 36 5-40 141-176 (785)
362 PRK09564 coenzyme A disulfide 95.7 0.013 2.8E-07 53.9 4.3 37 5-41 150-186 (444)
363 PTZ00153 lipoamide dehydrogena 95.7 0.013 2.9E-07 56.1 4.4 38 5-42 313-350 (659)
364 PF13738 Pyr_redox_3: Pyridine 95.7 0.035 7.6E-07 44.9 6.3 54 232-287 82-136 (203)
365 TIGR01424 gluta_reduc_2 glutat 95.6 0.015 3.2E-07 53.5 4.3 36 5-40 167-202 (446)
366 PRK06130 3-hydroxybutyryl-CoA 95.6 0.017 3.7E-07 50.4 4.4 37 1-37 1-37 (311)
367 PTZ00058 glutathione reductase 95.5 0.017 3.7E-07 54.4 4.5 38 4-41 237-274 (561)
368 PRK06035 3-hydroxyacyl-CoA deh 95.5 0.014 3.1E-07 50.3 3.7 33 5-37 4-36 (291)
369 PRK08010 pyridine nucleotide-d 95.5 0.018 3.8E-07 52.9 4.5 37 5-41 159-195 (441)
370 PRK10262 thioredoxin reductase 95.5 0.017 3.6E-07 50.6 4.2 35 5-39 147-181 (321)
371 PRK14989 nitrite reductase sub 95.5 0.016 3.5E-07 57.4 4.3 36 5-40 146-181 (847)
372 TIGR03143 AhpF_homolog putativ 95.4 0.018 3.8E-07 54.5 4.2 35 5-39 144-178 (555)
373 PRK15317 alkyl hydroperoxide r 95.4 0.018 3.8E-07 54.1 4.2 35 5-39 352-386 (517)
374 TIGR01763 MalateDH_bact malate 95.4 0.023 5.1E-07 49.2 4.5 33 5-37 2-35 (305)
375 PRK05808 3-hydroxybutyryl-CoA 95.4 0.016 3.5E-07 49.7 3.6 32 6-37 5-36 (282)
376 TIGR01316 gltA glutamate synth 95.4 0.019 4.1E-07 52.8 4.2 34 5-38 273-306 (449)
377 TIGR03026 NDP-sugDHase nucleot 95.3 0.018 3.8E-07 52.4 3.8 32 6-37 2-33 (411)
378 cd01080 NAD_bind_m-THF_DH_Cycl 95.3 0.029 6.2E-07 43.9 4.4 33 4-36 44-77 (168)
379 PRK14620 NAD(P)H-dependent gly 95.3 0.023 4.9E-07 50.0 4.2 32 6-37 2-33 (326)
380 PLN02546 glutathione reductase 95.2 0.023 4.9E-07 53.6 4.3 37 5-41 253-289 (558)
381 COG0771 MurD UDP-N-acetylmuram 95.2 0.025 5.3E-07 51.2 4.1 36 4-39 7-42 (448)
382 PRK14619 NAD(P)H-dependent gly 95.2 0.028 6.1E-07 48.9 4.4 34 4-37 4-37 (308)
383 PRK00094 gpsA NAD(P)H-dependen 95.1 0.029 6.3E-07 49.2 4.4 32 6-37 3-34 (325)
384 PRK12831 putative oxidoreducta 95.1 0.029 6.3E-07 51.8 4.6 34 5-38 282-315 (464)
385 KOG2304 3-hydroxyacyl-CoA dehy 95.1 0.025 5.4E-07 45.6 3.5 36 3-38 10-45 (298)
386 TIGR01470 cysG_Nterm siroheme 95.1 0.036 7.7E-07 45.0 4.5 33 4-36 9-41 (205)
387 TIGR02354 thiF_fam2 thiamine b 95.1 0.034 7.4E-07 45.0 4.4 33 4-36 21-54 (200)
388 KOG3851 Sulfide:quinone oxidor 95.1 0.02 4.4E-07 48.7 3.1 35 3-37 38-74 (446)
389 PF13241 NAD_binding_7: Putati 95.1 0.029 6.2E-07 40.1 3.5 33 4-36 7-39 (103)
390 PRK06718 precorrin-2 dehydroge 95.0 0.037 8.1E-07 44.8 4.5 32 4-35 10-41 (202)
391 PTZ00082 L-lactate dehydrogena 95.0 0.038 8.3E-07 48.2 4.8 38 1-38 3-41 (321)
392 PRK13748 putative mercuric red 95.0 0.032 6.9E-07 53.0 4.5 33 5-37 271-303 (561)
393 TIGR01292 TRX_reduct thioredox 94.9 0.031 6.8E-07 48.2 4.1 35 5-39 142-176 (300)
394 PF01488 Shikimate_DH: Shikima 94.9 0.048 1E-06 41.1 4.6 33 4-36 12-45 (135)
395 PRK12770 putative glutamate sy 94.9 0.029 6.3E-07 49.8 3.9 34 5-38 173-207 (352)
396 COG1893 ApbA Ketopantoate redu 94.9 0.026 5.6E-07 48.9 3.4 34 5-38 1-34 (307)
397 COG0686 Ald Alanine dehydrogen 94.9 0.026 5.5E-07 47.9 3.2 33 4-36 168-200 (371)
398 PRK06116 glutathione reductase 94.8 0.12 2.6E-06 47.6 7.9 57 233-290 209-266 (450)
399 TIGR01438 TGR thioredoxin and 94.8 0.035 7.7E-07 51.5 4.4 32 5-36 181-212 (484)
400 PRK14727 putative mercuric red 94.8 0.039 8.5E-07 51.2 4.7 33 5-37 189-221 (479)
401 PRK06719 precorrin-2 dehydroge 94.8 0.048 1E-06 42.2 4.3 31 4-34 13-43 (157)
402 PRK07531 bifunctional 3-hydrox 94.7 0.041 8.8E-07 51.2 4.4 33 5-37 5-37 (495)
403 TIGR00518 alaDH alanine dehydr 94.7 0.044 9.6E-07 48.9 4.4 34 4-37 167-200 (370)
404 PRK07417 arogenate dehydrogena 94.7 0.038 8.3E-07 47.3 3.9 32 6-37 2-33 (279)
405 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.7 0.038 8.3E-07 51.4 4.1 33 5-37 6-38 (503)
406 PRK01710 murD UDP-N-acetylmura 94.7 0.04 8.6E-07 50.9 4.2 33 5-37 15-47 (458)
407 PRK08268 3-hydroxy-acyl-CoA de 94.6 0.047 1E-06 50.9 4.7 34 5-38 8-41 (507)
408 COG1748 LYS9 Saccharopine dehy 94.6 0.045 9.9E-07 48.6 4.3 32 5-36 2-34 (389)
409 PF03446 NAD_binding_2: NAD bi 94.6 0.047 1E-06 42.6 4.0 31 6-36 3-33 (163)
410 PRK15057 UDP-glucose 6-dehydro 94.5 0.044 9.4E-07 49.2 4.0 31 6-37 2-32 (388)
411 TIGR01816 sdhA_forward succina 94.5 0.14 3.1E-06 48.5 7.6 54 232-286 119-178 (565)
412 PRK04690 murD UDP-N-acetylmura 94.5 0.043 9.4E-07 50.7 4.1 34 5-38 9-42 (468)
413 PTZ00318 NADH dehydrogenase-li 94.4 0.051 1.1E-06 49.6 4.4 36 6-41 175-224 (424)
414 PRK11749 dihydropyrimidine deh 94.4 0.047 1E-06 50.4 4.2 34 5-38 274-308 (457)
415 PLN02353 probable UDP-glucose 94.4 0.045 9.8E-07 50.4 4.0 33 5-37 2-36 (473)
416 KOG1336 Monodehydroascorbate/f 94.4 0.12 2.6E-06 46.5 6.4 58 232-289 255-313 (478)
417 PRK00421 murC UDP-N-acetylmura 94.4 0.047 1E-06 50.4 4.0 35 4-38 7-42 (461)
418 PRK04308 murD UDP-N-acetylmura 94.4 0.061 1.3E-06 49.5 4.8 36 4-39 5-40 (445)
419 PF00056 Ldh_1_N: lactate/mala 94.4 0.076 1.6E-06 40.3 4.5 33 5-37 1-36 (141)
420 PF02254 TrkA_N: TrkA-N domain 94.3 0.074 1.6E-06 38.7 4.3 31 7-37 1-31 (116)
421 PRK07843 3-ketosteroid-delta-1 94.3 0.16 3.4E-06 48.2 7.4 56 232-288 208-269 (557)
422 TIGR01915 npdG NADPH-dependent 94.2 0.062 1.3E-06 44.2 4.1 32 6-37 2-34 (219)
423 PRK03369 murD UDP-N-acetylmura 94.2 0.057 1.2E-06 50.2 4.2 32 5-36 13-44 (488)
424 PRK00066 ldh L-lactate dehydro 94.2 0.082 1.8E-06 46.1 4.9 34 4-37 6-41 (315)
425 PRK11730 fadB multifunctional 94.1 0.056 1.2E-06 52.7 4.1 34 5-38 314-347 (715)
426 cd01075 NAD_bind_Leu_Phe_Val_D 94.1 0.09 2E-06 42.5 4.6 32 5-36 29-60 (200)
427 PRK02472 murD UDP-N-acetylmura 94.0 0.061 1.3E-06 49.5 4.1 33 5-37 6-38 (447)
428 TIGR01423 trypano_reduc trypan 94.0 0.23 5E-06 46.2 7.8 44 3-46 2-54 (486)
429 TIGR02437 FadB fatty oxidation 94.0 0.062 1.3E-06 52.3 4.1 33 5-37 314-346 (714)
430 COG1250 FadB 3-hydroxyacyl-CoA 94.0 0.063 1.4E-06 46.1 3.7 33 5-37 4-36 (307)
431 cd05191 NAD_bind_amino_acid_DH 93.9 0.13 2.8E-06 35.3 4.6 32 4-35 23-55 (86)
432 PRK11199 tyrA bifunctional cho 93.9 0.08 1.7E-06 47.4 4.4 35 3-37 97-132 (374)
433 PRK00683 murD UDP-N-acetylmura 93.9 0.069 1.5E-06 48.7 4.1 33 5-37 4-36 (418)
434 COG3634 AhpF Alkyl hydroperoxi 93.9 0.05 1.1E-06 46.9 2.9 34 4-37 354-387 (520)
435 PRK06223 malate dehydrogenase; 93.9 0.082 1.8E-06 46.0 4.4 34 5-38 3-37 (307)
436 cd05293 LDH_1 A subgroup of L- 93.8 0.099 2.1E-06 45.5 4.7 36 2-37 1-38 (312)
437 cd05291 HicDH_like L-2-hydroxy 93.8 0.083 1.8E-06 45.9 4.3 32 6-37 2-35 (306)
438 PLN02507 glutathione reductase 93.8 0.26 5.6E-06 46.1 7.6 42 4-45 25-75 (499)
439 PRK09424 pntA NAD(P) transhydr 93.7 0.071 1.5E-06 49.4 3.7 34 4-37 165-198 (509)
440 PRK03806 murD UDP-N-acetylmura 93.7 0.092 2E-06 48.2 4.5 34 4-37 6-39 (438)
441 cd00401 AdoHcyase S-adenosyl-L 93.6 0.087 1.9E-06 47.5 4.1 34 4-37 202-235 (413)
442 PRK14573 bifunctional D-alanyl 93.6 0.078 1.7E-06 52.6 4.2 37 1-37 1-38 (809)
443 PRK12778 putative bifunctional 93.6 0.09 2E-06 51.8 4.5 34 5-38 571-605 (752)
444 PRK03803 murD UDP-N-acetylmura 93.5 0.098 2.1E-06 48.2 4.4 36 2-37 4-39 (448)
445 TIGR02441 fa_ox_alpha_mit fatt 93.5 0.073 1.6E-06 52.0 3.6 34 5-38 336-369 (737)
446 PRK12475 thiamine/molybdopteri 93.4 0.11 2.5E-06 45.6 4.5 34 4-37 24-58 (338)
447 PRK07688 thiamine/molybdopteri 93.4 0.11 2.5E-06 45.7 4.5 33 4-36 24-57 (339)
448 PRK15116 sulfur acceptor prote 93.4 0.12 2.7E-06 43.6 4.5 36 4-39 30-66 (268)
449 PRK14694 putative mercuric red 93.4 0.34 7.4E-06 44.9 7.8 41 4-45 6-46 (468)
450 PRK12549 shikimate 5-dehydroge 93.4 0.11 2.4E-06 44.5 4.2 33 5-37 128-161 (284)
451 PRK08306 dipicolinate synthase 93.4 0.12 2.6E-06 44.6 4.5 34 4-37 152-185 (296)
452 cd05311 NAD_bind_2_malic_enz N 93.3 0.11 2.5E-06 42.8 4.1 34 4-37 25-61 (226)
453 PRK02006 murD UDP-N-acetylmura 93.3 0.096 2.1E-06 48.9 4.0 33 5-37 8-40 (498)
454 PF00899 ThiF: ThiF family; I 93.3 0.12 2.6E-06 38.8 3.9 33 4-36 2-35 (135)
455 cd01339 LDH-like_MDH L-lactate 93.3 0.099 2.1E-06 45.3 3.8 31 7-37 1-32 (300)
456 PRK00141 murD UDP-N-acetylmura 93.2 0.12 2.5E-06 48.0 4.4 32 5-36 16-47 (473)
457 PRK01368 murD UDP-N-acetylmura 93.2 0.11 2.5E-06 47.8 4.2 32 4-36 6-37 (454)
458 PF00670 AdoHcyase_NAD: S-aden 93.1 0.12 2.7E-06 39.8 3.7 34 4-37 23-56 (162)
459 PF00070 Pyr_redox: Pyridine n 93.1 0.28 6.1E-06 32.9 5.2 38 232-271 40-77 (80)
460 PF13478 XdhC_C: XdhC Rossmann 93.1 0.13 2.8E-06 38.7 3.7 31 7-37 1-31 (136)
461 TIGR01505 tartro_sem_red 2-hyd 93.1 0.11 2.4E-06 44.8 3.8 32 6-37 1-32 (291)
462 cd01078 NAD_bind_H4MPT_DH NADP 93.0 0.16 3.5E-06 40.8 4.5 33 4-36 28-61 (194)
463 PTZ00117 malate dehydrogenase; 93.0 0.15 3.2E-06 44.6 4.6 35 3-37 4-39 (319)
464 PRK11154 fadJ multifunctional 93.0 0.11 2.3E-06 50.7 4.0 33 5-37 310-343 (708)
465 TIGR02440 FadJ fatty oxidation 93.0 0.098 2.1E-06 50.9 3.7 33 5-37 305-338 (699)
466 PRK09496 trkA potassium transp 92.9 0.13 2.8E-06 47.4 4.2 32 6-37 2-33 (453)
467 COG2084 MmsB 3-hydroxyisobutyr 92.7 0.15 3.3E-06 43.4 4.0 35 5-39 1-35 (286)
468 PRK12779 putative bifunctional 92.7 0.13 2.8E-06 51.7 4.2 34 5-38 448-481 (944)
469 PRK07502 cyclohexadienyl dehyd 92.6 0.16 3.6E-06 44.1 4.3 33 5-37 7-41 (307)
470 PLN02695 GDP-D-mannose-3',5'-e 92.6 0.17 3.8E-06 45.2 4.6 35 2-36 19-54 (370)
471 cd01487 E1_ThiF_like E1_ThiF_l 92.6 0.18 3.9E-06 39.8 4.1 32 6-37 1-33 (174)
472 TIGR00561 pntA NAD(P) transhyd 92.6 0.17 3.7E-06 46.8 4.5 34 4-37 164-197 (511)
473 PRK03815 murD UDP-N-acetylmura 92.6 0.14 3E-06 46.3 3.8 30 6-36 2-31 (401)
474 TIGR02853 spore_dpaA dipicolin 92.6 0.18 3.8E-06 43.4 4.3 34 4-37 151-184 (287)
475 PRK05442 malate dehydrogenase; 92.6 0.18 3.9E-06 44.1 4.4 37 1-37 1-45 (326)
476 PRK01390 murD UDP-N-acetylmura 92.5 0.13 2.9E-06 47.5 3.8 32 5-36 10-41 (460)
477 PRK15461 NADH-dependent gamma- 92.5 0.15 3.2E-06 44.2 3.8 32 6-37 3-34 (296)
478 TIGR02356 adenyl_thiF thiazole 92.5 0.21 4.5E-06 40.5 4.5 33 4-36 21-54 (202)
479 PLN02172 flavin-containing mon 92.5 0.12 2.7E-06 47.6 3.5 33 5-37 205-237 (461)
480 PRK06849 hypothetical protein; 92.5 0.19 4.2E-06 45.3 4.7 38 1-38 1-39 (389)
481 TIGR00507 aroE shikimate 5-deh 92.5 0.19 4.1E-06 42.8 4.4 33 4-36 117-149 (270)
482 KOG2495 NADH-dehydrogenase (ub 92.4 0.06 1.3E-06 47.7 1.3 33 7-39 221-267 (491)
483 PRK08644 thiamine biosynthesis 92.4 0.21 4.6E-06 40.8 4.4 33 4-36 28-61 (212)
484 cd01483 E1_enzyme_family Super 92.4 0.22 4.9E-06 37.8 4.3 32 6-37 1-33 (143)
485 PRK11559 garR tartronate semia 92.4 0.19 4.1E-06 43.4 4.4 33 5-37 3-35 (296)
486 TIGR00872 gnd_rel 6-phosphoglu 92.3 0.18 3.9E-06 43.6 4.1 32 6-37 2-33 (298)
487 TIGR02964 xanthine_xdhC xanthi 92.3 0.25 5.3E-06 41.4 4.7 35 3-37 99-133 (246)
488 cd05290 LDH_3 A subgroup of L- 92.3 0.2 4.4E-06 43.4 4.3 31 6-36 1-33 (307)
489 TIGR02355 moeB molybdopterin s 92.2 0.23 4.9E-06 41.5 4.4 34 4-37 24-58 (240)
490 TIGR00936 ahcY adenosylhomocys 92.1 0.23 5.1E-06 44.6 4.7 34 4-37 195-228 (406)
491 cd01065 NAD_bind_Shikimate_DH 92.1 0.27 5.9E-06 37.8 4.5 33 4-36 19-52 (155)
492 PRK08017 oxidoreductase; Provi 92.0 0.24 5.2E-06 41.5 4.5 31 6-36 4-35 (256)
493 PTZ00142 6-phosphogluconate de 92.0 0.17 3.7E-06 46.6 3.8 33 5-37 2-34 (470)
494 PTZ00052 thioredoxin reductase 92.0 0.7 1.5E-05 43.2 7.8 45 1-45 2-54 (499)
495 PRK12548 shikimate 5-dehydroge 91.9 0.25 5.5E-06 42.5 4.5 33 5-37 127-160 (289)
496 COG0287 TyrA Prephenate dehydr 91.9 0.25 5.4E-06 42.1 4.4 36 4-39 3-38 (279)
497 PRK12814 putative NADPH-depend 91.9 0.19 4E-06 48.7 4.1 34 5-38 324-358 (652)
498 TIGR03376 glycerol3P_DH glycer 91.9 0.2 4.4E-06 44.1 3.9 32 6-37 1-40 (342)
499 PRK09599 6-phosphogluconate de 91.8 0.22 4.8E-06 43.2 4.1 32 6-37 2-33 (301)
500 TIGR01087 murD UDP-N-acetylmur 91.8 0.19 4.2E-06 46.0 3.9 33 6-38 1-33 (433)
No 1
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=3.5e-43 Score=313.87 Aligned_cols=292 Identities=68% Similarity=1.185 Sum_probs=265.2
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 80 (328)
|+++|||||||+|++|+++|..|+++|++|+++|++++.||+++|.+..+++..|..+..+|..+|....|++|+.|+++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 88999999999999999999999999999999999999999999999999988888777788899999999999999999
Q ss_pred ecCchHHHHHHhcCCCCeeEEEeeCceeEe-eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312 81 IANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (328)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (328)
+..+.++..+.+.++.++++|+..+..+++ .+|+.+++|.+..+.+.++++++++|+.+.+|+.++.++...++..+..
T Consensus 81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 999999999999999999999999999998 8899999999899999999999999999999999998877655555555
Q ss_pred ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHH
Q 020312 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (328)
Q Consensus 160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~ 239 (328)
.+++..|+.+|++++++++..++++.+++++...+.+...+...++.++.++..++..+ |..++.+|.||++.|+++|+
T Consensus 161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~ 239 (443)
T PTZ00363 161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239 (443)
T ss_pred cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence 55678999999999999999999998888877666666667778888888999988888 77789999999999999999
Q ss_pred HHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcchhh
Q 020312 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVI 293 (328)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~~~ 293 (328)
+.++..|++++++++|++|+.++++++++|++ +|++++|+.||++++++|.+++
T Consensus 240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~ 294 (443)
T PTZ00363 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVK 294 (443)
T ss_pred HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccc
Confidence 99999999999999999999884567888888 8889999999999999988654
No 2
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=1.3e-40 Score=293.25 Aligned_cols=292 Identities=61% Similarity=1.053 Sum_probs=248.5
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCC-CCCCccCCCCCeEEecCcce
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE-QPPAHLGSSRDYNVDMIPKF 79 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 79 (328)
|+++|||||+|-|+.-...|..|++.|.+|+.+|++++-||..+|.++.++...+.... .++..+|..++|++|+.|++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 89999999999999999999999999999999999999999999999999988887652 33467888999999999999
Q ss_pred EecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312 80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (328)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (328)
+++.+++++.+.++++.+|++|+..+..|++.+++..++|.++.+.|.+.++++++|+.+++|+.++.++.+..+..+..
T Consensus 81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~ 160 (438)
T PF00996_consen 81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG 160 (438)
T ss_dssp EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987766666677
Q ss_pred ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHH
Q 020312 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (328)
Q Consensus 160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~ 239 (328)
++....++.++++++++++.+++++.+++++...+.+...|...++.++.+|..++++| |.+||.+|.+|.+.|+++++
T Consensus 161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc 239 (438)
T PF00996_consen 161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC 239 (438)
T ss_dssp G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence 77788999999999999999999999999999887777778889999999999999999 88899999999999999999
Q ss_pred HHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhh
Q 020312 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVI 293 (328)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~ 293 (328)
|.+.-.|+.+.+|++|.+|..++++++++|.++|++++|+.||+.++++|.+++
T Consensus 240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~ 293 (438)
T PF00996_consen 240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVK 293 (438)
T ss_dssp HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEE
T ss_pred HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCccccc
Confidence 999999999999999999999657889999999999999999999999886554
No 3
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=266.61 Aligned_cols=293 Identities=67% Similarity=1.140 Sum_probs=278.1
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCC-CCCCCccCCCCCeEEecCcce
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-EQPPAHLGSSRDYNVDMIPKF 79 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 79 (328)
|+++|||+|+|-|+.-...+..|+..|.+|+.++++++-||..+|.+..+++..|+.+ +.+|...|..++|++|+.|.+
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~ 80 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF 80 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence 7889999999999999999999999999999999999999999999999999999955 788999999999999999999
Q ss_pred EecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312 80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (328)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (328)
+++.++++.++.+.++.+||+|....+.+++.+|+.+++|..+.+.+.+.++++++|+..++|+.++..+.+..+..+..
T Consensus 81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~ 160 (440)
T KOG1439|consen 81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG 160 (440)
T ss_pred hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHH
Q 020312 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (328)
Q Consensus 160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~ 239 (328)
++..+.++.+++.++++.....+++++++++...+.+.+.|...++.++.+|..++++| |.+++.+|.+|.+.|++.++
T Consensus 161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa 239 (440)
T KOG1439|consen 161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA 239 (440)
T ss_pred cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence 88888899999999999999999999999888889999999999999999999999999 88889999999999999999
Q ss_pred HHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhhh
Q 020312 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVII 294 (328)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~~ 294 (328)
|...-.|+.+.+|.++.+|..+++++++++..+++...++.+|+.|++.|.++++
T Consensus 240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~ 294 (440)
T KOG1439|consen 240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKK 294 (440)
T ss_pred HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHh
Confidence 9999999999999999999995588999999999999999999999999887765
No 4
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=216.42 Aligned_cols=283 Identities=48% Similarity=0.812 Sum_probs=251.1
Q ss_pred CCCc--ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcc
Q 020312 1 MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPK 78 (328)
Q Consensus 1 ~~~~--~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 78 (328)
|.+. |||+|+|-|+.-...+..|+-+|.+|+++++++.-|+..+|.+..++..-|...+..|...+....|.+|+.|.
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK 80 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK 80 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence 4543 99999999999999999999999999999999999999999999998888888788899999999999999999
Q ss_pred eEecCchHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccc
Q 020312 79 FIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE 158 (328)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (328)
++++.++++.++.+.++.+|+++....+.+.+.+++.+++|.++.+.+.++++++++|+...+|++|+..+.+ ....+.
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~ 159 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ 159 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888876 444444
Q ss_pred cccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHH
Q 020312 159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238 (328)
Q Consensus 159 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l 238 (328)
.+..++.++....+.++++....++++++++++.+ .+.|...++.++.+|+++++.| |.+|+.+|+.|.+.|++.+
T Consensus 160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF 235 (434)
T COG5044 160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235 (434)
T ss_pred hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence 54445667777889999999999999998887754 4557788899999999999999 8999999999999999999
Q ss_pred HHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312 239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 239 ~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
+|.+.-.|+.+.+|+++.+|... +. |.+|..+..+..|.++|..+++.+.
T Consensus 236 aRssav~GgtymLn~~i~ein~t-k~-v~~v~~~~~~~ka~KiI~~~~~~~~ 285 (434)
T COG5044 236 ARSSAVYGGTYMLNQAIDEINET-KD-VETVDKGSLTQKAGKIISSPTYFRE 285 (434)
T ss_pred HHhhhccCceeecCcchhhhccc-cc-eeeeecCcceeecCcccCCcccccc
Confidence 99999999999999999999865 32 4455557788999999998887643
No 5
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.95 E-value=1.3e-26 Score=214.67 Aligned_cols=270 Identities=20% Similarity=0.244 Sum_probs=173.7
Q ss_pred EEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCchH
Q 020312 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL 86 (328)
Q Consensus 7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 86 (328)
|||||||++||+||.+|+++|++|+|||+++++||+++|+.. .+|.+|.|++++.....+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~--------------------~G~~fD~G~~~~~~~~~~ 60 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED--------------------DGFRFDTGPTVITMPEAL 60 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEec--------------------CCeEEecCCeEEccccHH
Confidence 689999999999999999999999999999999999999865 579999999998765433
Q ss_pred HHHHHhcC--CCCeeEEEeeCceeEe--eCCeEEEcCCCchhhhcCCCCChh--hHHHHHHHHHHHhhccc--------C
Q 020312 87 VRVLIHTD--VTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDE--------N 152 (328)
Q Consensus 87 ~~~~~~~~--~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~ 152 (328)
...+...+ +.+++++...++.+.+ .+|..+.++.+ .+.+.+.+...+ +...+.+|.+.+++... .
T Consensus 61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (502)
T TIGR02734 61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV 139 (502)
T ss_pred HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33434443 3455666665555433 34667777643 443333222211 11223333333222110 0
Q ss_pred CCc-c---------cccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCC
Q 020312 153 DPK-T---------HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS 222 (328)
Q Consensus 153 ~~~-~---------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 222 (328)
+.. . .........|+.++++++.-++.++.++....... .......+... .+..+ ..+ ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~-g~~p~~~~~~~---~l~~~----~~~--~~ 209 (502)
T TIGR02734 140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL-GGNPFRTPSIY---ALISA----LER--EW 209 (502)
T ss_pred CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee-ccCcccchHHH---HHHHH----HHh--hc
Confidence 000 0 00112245788888888766666666554211111 11111111111 11111 111 23
Q ss_pred eEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC-------Ccc----
Q 020312 223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY-------LPN---- 290 (328)
Q Consensus 223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~-------~~~---- 290 (328)
..+++.||++.++++|.+.++++|++|+++++|++|..+ ++++++|++ ++++++||+||+++++ .++
T Consensus 210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~ 288 (502)
T TIGR02734 210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR 288 (502)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc
Confidence 456889999999999999999999999999999999988 788888888 6778999999998885 111
Q ss_pred -hh----hh--hccceeEEeeeehh
Q 020312 291 -KV----II--IMLIGFILIFLVRR 308 (328)
Q Consensus 291 -~~----~~--~~~~~~~~~~~~~~ 308 (328)
+. ++ ++.+++++|++++.
T Consensus 289 ~~~~~~~~~~~~s~s~~~~~lgl~~ 313 (502)
T TIGR02734 289 RYPAARLSRKRPSPSLFVLYFGLLG 313 (502)
T ss_pred cccccccccCCcCCeeeEEEEeecc
Confidence 11 12 58899999999983
No 6
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.8e-26 Score=211.15 Aligned_cols=290 Identities=19% Similarity=0.247 Sum_probs=175.1
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 82 (328)
+.+||||||||++||+||.+|+++|++|+||||++++||++++... .+|.+|.|++++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~--------------------~Gf~fd~G~~~~~~ 61 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL--------------------DGFRFDTGPSWYLM 61 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec--------------------cceEeccCcceeec
Confidence 4789999999999999999999999999999999999999999975 47999999988877
Q ss_pred CchHHHHHHhcC-CCCe-eEEEeeCceeEee--CCeEEEcCCCchhhhcCCCCCh--hhHHHHHHHHHHHhh----cccC
Q 020312 83 NGALVRVLIHTD-VTKY-LYFKAVDGSFVYN--KGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQD----YDEN 152 (328)
Q Consensus 83 ~~~~~~~~~~~~-~~~~-l~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~ 152 (328)
.... ..+..++ ...+ +.+...++.+... +|....+..+ .+.....+... .+...+.++.....+ ....
T Consensus 62 ~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (487)
T COG1233 62 PDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTD-LEATAELLESLEPGDGEALARYLRLLARLYELLAAL 139 (487)
T ss_pred CchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence 6442 3333333 3333 5555545555442 3556655532 43333222111 111122222222211 1110
Q ss_pred --CCcccc------c-------ccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCch-HHHHHHHHHHHHhhh
Q 020312 153 --DPKTHE------G-------MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPA-LDTVKRMKLYAESIA 216 (328)
Q Consensus 153 --~~~~~~------~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~ 216 (328)
.+.... . ......++.+++....-++.++..+....... . ..|. ..++..+.. ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~---~--~~p~~~~a~~~~~~---~~- 210 (487)
T COG1233 140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG---G--APPSTPPALYLLLS---HL- 210 (487)
T ss_pred cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc---C--CCCCchhHHHHHHH---Hh-
Confidence 000000 0 01123344555544422223333332211100 0 1111 111111111 11
Q ss_pred cccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC-cchh--
Q 020312 217 RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-PNKV-- 292 (328)
Q Consensus 217 ~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~-~~~~-- 292 (328)
.......+|+||++.|+++|++.+++.|++|+++++|++|+.+ +|+.+++++ +++.+++|+||++.++. +..+
T Consensus 211 --~~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~ 287 (487)
T COG1233 211 --GLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADPALLARLLG 287 (487)
T ss_pred --cccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence 1244578999999999999999999999999999999999999 887777777 55689999999988872 2111
Q ss_pred -----hh-----hccceeEEeeeehhhhHHHhhheeeeeccccc
Q 020312 293 -----II-----IMLIGFILIFLVRRILRFFLKHLSIQASHWWC 326 (328)
Q Consensus 293 -----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (328)
+. ++.+++..+++++.......+|..+....|+.
T Consensus 288 ~~~~~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~ 331 (487)
T COG1233 288 EARRPRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTRE 331 (487)
T ss_pred hhhhhccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHH
Confidence 11 78889999999988522234566666666654
No 7
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.94 E-value=8.7e-26 Score=208.51 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=163.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
+.||||||||++||+||..|+++|++|+|||+++++||++.++.. .+|.+|.|++++...
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~--------------------~G~~fD~G~~~~~~~ 60 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR--------------------RGFTFDVGATQVAGL 60 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceecc--------------------CCEEEeecceEEEec
Confidence 358999999999999999999999999999999999999999965 579999999998752
Q ss_pred --ch-HHHHHHhcCCCCeeEEEeeCcee--EeeCC-eEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhh-------cc
Q 020312 84 --GA-LVRVLIHTDVTKYLYFKAVDGSF--VYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD-------YD 150 (328)
Q Consensus 84 --~~-~~~~~~~~~~~~~l~~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 150 (328)
.. ....+.+.++... .+...++.+ .+.+| ..+.++ .+.+.+.+.+...+.. + .+++..+.+ ..
T Consensus 61 ~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~-~d~~~~~~~l~~~~p~-~-~~~~~~~~~~~~~~~~~~ 136 (492)
T TIGR02733 61 EPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLW-HDPDRWQKERERQFPG-S-ERFWQLCSQLHQSNWRFA 136 (492)
T ss_pred CcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeee-cCHHHHHHHHHHHCCC-h-HHHHHHHHHHHHHHHHHh
Confidence 22 2233334444311 122223322 22344 345555 3344443222221110 1 011111110 00
Q ss_pred cCCC----c-c--------------cccccCCCCCHHHHHHhcC--CChhHHHHHhhhhhcccCCCCCCCchHHHHHHHH
Q 020312 151 ENDP----K-T--------------HEGMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMK 209 (328)
Q Consensus 151 ~~~~----~-~--------------~~~~~~~~~s~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 209 (328)
...+ . . .........|+.+++++.+ -++.++.++.....++..... .....+....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~---~~~~~~~~~~ 213 (492)
T TIGR02733 137 GRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDA---DETAALYGAT 213 (492)
T ss_pred hcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCCh---hhhhHHHHHH
Confidence 0000 0 0 0000123578888888764 344456555432211111100 0111111100
Q ss_pred HHHHhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC-----ceEEcCEEEE
Q 020312 210 LYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVC 283 (328)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g-----~~~~ad~vV~ 283 (328)
... +.. .....++++||++.|+++|++.++++|++|+++++|++|..+ ++++.+|.+ ++ +++.||+||+
T Consensus 214 -~~~-~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~ 288 (492)
T TIGR02733 214 -VLQ-MAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVA 288 (492)
T ss_pred -Hhh-ccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEE
Confidence 001 111 123357799999999999999999999999999999999998 777666665 44 5799999999
Q ss_pred CCCC------Cc-----chh----hh--hccceeEEeeeehhh
Q 020312 284 DPSY------LP-----NKV----II--IMLIGFILIFLVRRI 309 (328)
Q Consensus 284 ~~~~------~~-----~~~----~~--~~~~~~~~~~~~~~~ 309 (328)
++++ ++ +.. .+ .+.++++++++++..
T Consensus 289 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 289 NLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred CCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeeccc
Confidence 9875 12 111 12 577889999999874
No 8
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.94 E-value=1.6e-25 Score=206.46 Aligned_cols=274 Identities=21% Similarity=0.259 Sum_probs=171.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 83 (328)
+||||||||++||+||.+|+++|++|+||||++.+||++++++. .+|.+|.|++++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~--------------------~G~~fd~g~~~~~~~~ 60 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFER--------------------EGYRFDVGASMIFGFG 60 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEecc--------------------CCEEEEecchhheecC
Confidence 69999999999999999999999999999999999999999864 579999999987532
Q ss_pred -----chHHHHHHhcCCCCeeEEEeeCceeEe--eCCeEEEcCCCchhhhcCCCCChh--hHHHHHHHHHHHhhccc---
Q 020312 84 -----GALVRVLIHTDVTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDE--- 151 (328)
Q Consensus 84 -----~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--- 151 (328)
+.+.+.+...+ ..+++......+.+ .+|..+.++ .+.+.+.+.+...+ +...+.+|+..++....
T Consensus 61 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~-~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 137 (493)
T TIGR02730 61 DKGTTNLLTRALAAVG--RKLETIPDPVQIHYHLPNGLNVKVH-REYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN 137 (493)
T ss_pred CcccccHHHHHHHHcC--CcccccCCCccEEEECCCCeeEeee-cCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence 22222332222 22333322222222 345556666 34555544333322 12233444433222100
Q ss_pred -------CCCcc-c-----------ccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHH
Q 020312 152 -------NDPKT-H-----------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA 212 (328)
Q Consensus 152 -------~~~~~-~-----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 212 (328)
..+.. . ........++.++++++.-++.++.++...............+.... ...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~---~~~-- 212 (493)
T TIGR02730 138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINA---GMV-- 212 (493)
T ss_pred hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhH---HHh--
Confidence 00000 0 00011236778888888777777766542211111100011111111 111
Q ss_pred HhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC---
Q 020312 213 ESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL--- 288 (328)
Q Consensus 213 ~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~--- 288 (328)
+... .....++|.||++.++++|.+.++++|++|+++++|++|..+ ++++.+|++ ++++++||+||++++++
T Consensus 213 --~~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 213 --FSDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred --hccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 1111 123467899999999999999999999999999999999988 788899988 77789999999988752
Q ss_pred ----c-----chh----hh--hccceeEEeeeehhhh
Q 020312 289 ----P-----NKV----II--IMLIGFILIFLVRRIL 310 (328)
Q Consensus 289 ----~-----~~~----~~--~~~~~~~~~~~~~~~~ 310 (328)
+ +.. ++ .+.+.+++|++++...
T Consensus 289 ~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~ 325 (493)
T TIGR02730 289 GKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADV 325 (493)
T ss_pred HHhCCccccchhhHHHHhhccCCCceEEEEEEecCcc
Confidence 2 111 12 5788999999998853
No 9
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.94 E-value=6.1e-25 Score=201.56 Aligned_cols=268 Identities=13% Similarity=0.188 Sum_probs=165.6
Q ss_pred cEEEECCChhHHHHHHhhhhC------CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312 6 DVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 79 (328)
+|+|||||+|||+||++|+++ |.+|+|||+++++||++.|.+. .++.+|+|+++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~--------------------~g~~~e~G~~~ 62 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEE--------------------KDFIMESGADS 62 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEee--------------------CCEEEecCcHH
Confidence 699999999999999999986 3799999999999999999864 46889999999
Q ss_pred EecCch-HHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhh--------hcCCCCChhhHHHHHHHHHHHhhcc
Q 020312 80 IIANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEA--------LKSPLMGIFEKRRARKFFIYVQDYD 150 (328)
Q Consensus 80 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (328)
+...++ +.+++.+.++...+........+.+.++...++|...... +...+.+... .+ +.+.+..
T Consensus 63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~--~~----~~~~~~~ 136 (463)
T PRK12416 63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKG--KI----VALKDFI 136 (463)
T ss_pred HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHH--HH----Hhhhhhc
Confidence 976654 4455556676655443333455666667776665432111 1111111111 11 1111111
Q ss_pred cCCCcccccccCCCCCHHHHHHhcCCChhH-HHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHh-------hh----c-
Q 020312 151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAES-------IA----R- 217 (328)
Q Consensus 151 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-------~~----~- 217 (328)
... ....+..|+.+|+++. +.+.. ..++.+.+......+....+....+..+..+... +. .
T Consensus 137 ~~~-----~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 210 (463)
T PRK12416 137 TKN-----KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQF 210 (463)
T ss_pred cCC-----CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhcc
Confidence 100 0012578999999876 44444 5566665432112222222221112221111110 00 0
Q ss_pred -ccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC------C-
Q 020312 218 -FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY------L- 288 (328)
Q Consensus 218 -~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~------~- 288 (328)
..+...+++++||++.|+++|++.+++ ++|+++++|++|+.+ ++++ .|++ +++.+.||+||++++. .
T Consensus 211 ~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~ 286 (463)
T PRK12416 211 QSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAPHDIAETLLQ 286 (463)
T ss_pred CCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCCHHHHHhhcC
Confidence 012345778899999999999887654 689999999999988 6664 4555 7778999999988764 1
Q ss_pred cch----hhh-hccceeEEeeeehhh
Q 020312 289 PNK----VII-IMLIGFILIFLVRRI 309 (328)
Q Consensus 289 ~~~----~~~-~~~~~~~~~~~~~~~ 309 (328)
++. +.+ ...+..+++++++..
T Consensus 287 ~~~l~~~~~~~~~~~~~~v~l~~~~~ 312 (463)
T PRK12416 287 SNELNEQFHTFKNSSLISIYLGFDIL 312 (463)
T ss_pred CcchhHHHhcCCCCceEEEEEEechh
Confidence 111 222 456788899999854
No 10
>PRK07233 hypothetical protein; Provisional
Probab=99.94 E-value=1.9e-24 Score=197.16 Aligned_cols=273 Identities=21% Similarity=0.251 Sum_probs=168.3
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc-
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 84 (328)
+|+|||||++||+||++|+++|++|+|||+++++||++.+... .++.+|.|.|++....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~--------------------~g~~~d~g~~~~~~~~~ 60 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEF--------------------GGLPIERFYHHIFKSDE 60 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecc--------------------CCcchhhhhhhhccccH
Confidence 6899999999999999999999999999999999999998864 3578888888876554
Q ss_pred hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccccCCC
Q 020312 85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTR 164 (328)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (328)
.+.+.+.+.++...+.+..... ..+.++..++++ .....+........++.... . ....... .. .....+.
T Consensus 61 ~~~~l~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~-~~---~~~~~~~ 131 (434)
T PRK07233 61 ALLELLDELGLEDKLRWRETKT-GYYVDGKLYPLG-TPLELLRFPHLSLIDKFRLG--L-LTLLARR-IK---DWRALDK 131 (434)
T ss_pred HHHHHHHHcCCCCceeeccCce-EEEECCeEecCC-CHHHHHcCCCCCHHHHHHhH--H-HHHhhhh-cc---ccccccc
Confidence 4455555566655444433222 233455555443 11222221222222211111 1 1111100 00 0112356
Q ss_pred CCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccC-CCeEEeecCCcCcHHHHHHHHHH
Q 020312 165 VTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARLSA 243 (328)
Q Consensus 165 ~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~~~~~gG~~~l~~~l~~~~~ 243 (328)
.++.+|+++...++..+.++.+.+...........+....+.++.... ...... ...+.+++||++.++++|++.++
T Consensus 132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~ 209 (434)
T PRK07233 132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRG--NRRYSLFGEKLGYLEGGFATLIDALAEAIE 209 (434)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhh--ccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence 899999988754443455665544322222222223222222222111 000000 23477899999999999999999
Q ss_pred HcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC------Cc---chhh----h-hccceeEEeeeehhh
Q 020312 244 VYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY------LP---NKVI----I-IMLIGFILIFLVRRI 309 (328)
Q Consensus 244 ~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~------~~---~~~~----~-~~~~~~~~~~~~~~~ 309 (328)
+.|++|++|++|++|+.+ +++++++..++++++||+||++++. .| +... . ...+..+++++++..
T Consensus 210 ~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 288 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRP 288 (434)
T ss_pred hcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECCCHHHHHhhcCCCcHHHHhhhcccCccceEEEEEEecCC
Confidence 999999999999999987 6777666677889999999988764 11 1111 1 456777888888775
Q ss_pred h
Q 020312 310 L 310 (328)
Q Consensus 310 ~ 310 (328)
+
T Consensus 289 ~ 289 (434)
T PRK07233 289 L 289 (434)
T ss_pred C
Confidence 3
No 11
>PRK07208 hypothetical protein; Provisional
Probab=99.93 E-value=1.6e-24 Score=199.79 Aligned_cols=274 Identities=17% Similarity=0.157 Sum_probs=167.5
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 80 (328)
|++..||+|||||++||+||++|+++|++|+|+|+++++||++.|... .++.+|.|+|++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~--------------------~g~~~d~G~h~~ 60 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTY--------------------KGNRFDIGGHRF 60 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeecc--------------------CCceEccCCcee
Confidence 788899999999999999999999999999999999999999988754 458899999998
Q ss_pred ecCchHHHHH-HhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccc
Q 020312 81 IANGALVRVL-IHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (328)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (328)
...++.+..+ .+......+... ......+.+|..+.+|....+.+. ..++.. ......++...... +
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~--~~~~~~--~~~~~~~~~~~~~~--~----- 128 (479)
T PRK07208 61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALK--NLGLWR--TAKCGASYLKARLR--P----- 128 (479)
T ss_pred ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHH--hCCHhH--HHHHHHHHHHHhcC--C-----
Confidence 8765544433 344432222222 223345567777777744222221 111111 11111122222110 0
Q ss_pred ccCCCCCHHHHHHhcCCChhHHHHHhhhhh-cccCCCCCCCchHHHHH---------HHHHHHHhh-h-------ccc-C
Q 020312 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALA-LHRDDRYLNEPALDTVK---------RMKLYAESI-A-------RFQ-G 220 (328)
Q Consensus 160 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~---------~~~~~~~~~-~-------~~~-g 220 (328)
..+..|+.+|+++..-.+....++.+... ++.. +....+....+. .+....... . ... .
T Consensus 129 -~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (479)
T PRK07208 129 -RKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGV-PCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSL 206 (479)
T ss_pred -CCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCC-ChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccc
Confidence 01568999999876333333556665442 3321 111111111110 111111110 0 000 0
Q ss_pred CCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCc-EEEEEe---cCc--eEEcCEEEECCCC------C
Q 020312 221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK-VVGVTS---EGE--TAKCKKVVCDPSY------L 288 (328)
Q Consensus 221 ~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~-v~~v~~---~g~--~~~ad~vV~~~~~------~ 288 (328)
...+.+|+||++.++++|++.+++.|++|++|++|++|..+ +++ ++.+.. +|+ .+.||+||+++++ +
T Consensus 207 ~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l 285 (479)
T PRK07208 207 IEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAAL 285 (479)
T ss_pred eeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhc
Confidence 23578899999999999999999999999999999999998 554 444443 243 5899999998764 1
Q ss_pred ----cchhh----h-hccceeEEeeeehhh
Q 020312 289 ----PNKVI----I-IMLIGFILIFLVRRI 309 (328)
Q Consensus 289 ----~~~~~----~-~~~~~~~~~~~~~~~ 309 (328)
|+... . ...+..++++++++.
T Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~ 315 (479)
T PRK07208 286 DPPPPPEVRAAAAGLRYRDFITVGLLVKEL 315 (479)
T ss_pred CCCCCHHHHHHHhCCCcceeEEEEEEecCC
Confidence 12221 1 345667888888765
No 12
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.93 E-value=7.8e-25 Score=193.50 Aligned_cols=269 Identities=14% Similarity=0.200 Sum_probs=179.1
Q ss_pred cEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
.|+|||||++||+|||+|.|++ .+|+|+|+++++||...|... .+|.+|.|++.+...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~--------------------~G~~~e~G~~~f~~~ 61 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKI--------------------DGFLFERGPHHFLAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEee--------------------CCEEEeechhheecc
Confidence 6999999999999999999999 999999999999999999965 579999999998776
Q ss_pred -chHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccccC
Q 020312 84 -GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDL 162 (328)
Q Consensus 84 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (328)
..+++.+.++++.+.+..+.....|++.+|+++++|....-.+.....+ + .......+.++... +. ....
T Consensus 62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~--~---~~~~~~~~~~~~~~-~~---~~~~ 132 (444)
T COG1232 62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLS--S---EAGLARALQEFIRP-KS---WEPK 132 (444)
T ss_pred hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccceeecCCcccc--c---hhHHHHHHHhhhcc-cC---CCCC
Confidence 5666677778888887767666668889999999996532222221111 1 11112222222110 00 0122
Q ss_pred CCCCHHHHHHhcCCChhH-HHHHhhhhh-cccCCCCCCCchHHH----HHHHHHHHHh---hhc--cc----CCCeEEee
Q 020312 163 TRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDT----VKRMKLYAES---IAR--FQ----GGSPYIYP 227 (328)
Q Consensus 163 ~~~s~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~----l~~~~~~~~~---~~~--~~----g~~~~~~~ 227 (328)
+..++++|++++ +.+++ ..++.+.+. ++. ++....++... ......+... ..+ .. ....+.+.
T Consensus 133 ~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~-~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 210 (444)
T COG1232 133 QDISVGEFIRRR-FGEEVVERFIEPLLEGIYA-GDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL 210 (444)
T ss_pred CCcCHHHHHHHH-HhHHHHHHHHHHHhhchhc-CCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence 678999999888 44554 557777653 332 11111111100 0001111000 000 00 01357788
Q ss_pred cCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC------Ccc-----hhhh-h
Q 020312 228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY------LPN-----KVII-I 295 (328)
Q Consensus 228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~------~~~-----~~~~-~ 295 (328)
+||++++++++++.++.. |+++++|++|.++ +...+.+..+++++.||.||+|+++ +++ .+.+ .
T Consensus 211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~~ 286 (444)
T COG1232 211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAKELQ 286 (444)
T ss_pred CccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhhhcc
Confidence 999999999999887654 9999999999998 6666666778899999999998765 122 1122 6
Q ss_pred ccceeEEeeeehhh
Q 020312 296 MLIGFILIFLVRRI 309 (328)
Q Consensus 296 ~~~~~~~~~~~~~~ 309 (328)
..+..++.++++.+
T Consensus 287 ~~s~~~vv~~~~~~ 300 (444)
T COG1232 287 YTSVVTVVVGLDEK 300 (444)
T ss_pred ccceEEEEEEeccc
Confidence 77888888888775
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=99.93 E-value=7.1e-24 Score=196.25 Aligned_cols=251 Identities=18% Similarity=0.185 Sum_probs=159.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (328)
+.+||+|||||++||+||++|+++ |++|+|||+++++||++.|.+. .++.+|.|++++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~--------------------~g~~~d~G~~~~~ 70 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSE--------------------DGFIWEEGPNSFQ 70 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEecc--------------------CCeEEecCCchhc
Confidence 467999999999999999999999 9999999999999999999864 4689999999999
Q ss_pred cCchHHHHHHhcCCCCeeEEEee-CceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312 82 ANGALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160 (328)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (328)
..++.+..+.+.++...+.+... ...+.+.+|+.+++|.+..+.+...+.++.++- ........ .....+
T Consensus 71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~------ 141 (496)
T PLN02576 71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKI--RAGLGAFG-WKRPPP------ 141 (496)
T ss_pred cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHH--HHhHHHhh-ccCCCC------
Confidence 88777777777777666544332 334666788888888654444444444443321 11111111 100000
Q ss_pred cCCCCCHHHHHHhcCCChhH-HHHHhhhhhcccCCCCCCCchHHHHHHHHHHH--------Hhhhcc-------------
Q 020312 161 DLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYA--------ESIARF------------- 218 (328)
Q Consensus 161 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~------------- 218 (328)
.....|+.+|+++. +.+.. ..++.+.+.-....+....+....+..+..+. ..+...
T Consensus 142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~ 220 (496)
T PLN02576 142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRD 220 (496)
T ss_pred CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccc
Confidence 12568999999886 56655 56666655321112111111222222211110 000000
Q ss_pred -----cCCCeEEeecCCcCcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCc-E-EEEEe-cC-ceEEcCEEEECCCC
Q 020312 219 -----QGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGK-V-VGVTS-EG-ETAKCKKVVCDPSY 287 (328)
Q Consensus 219 -----~g~~~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~-v-~~v~~-~g-~~~~ad~vV~~~~~ 287 (328)
......+..+||++.|+++|++.+ + .+|++|++|++|+.+ ++. + +.+.+ ++ +++.||+||++++.
T Consensus 221 ~~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~-~~~~~~v~~~~~~g~~~~~ad~VI~a~P~ 295 (496)
T PLN02576 221 PRLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKN-DDGGYSLTYDTPEGKVNVTAKAVVMTAPL 295 (496)
T ss_pred cccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEEC-CCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence 011234667899999999997654 5 689999999999987 544 3 22333 34 36999999988764
No 14
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.93 E-value=7.5e-24 Score=194.56 Aligned_cols=266 Identities=14% Similarity=0.123 Sum_probs=164.3
Q ss_pred ccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceE
Q 020312 5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 80 (328)
.||+|||||++||+||++|+++ |++|+|+|+++++||++.|.+. .++.+|.|++++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~--------------------~g~~~e~G~~~~ 62 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKE--------------------DGYLIERGPDSF 62 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEee--------------------CCEEEecCcccc
Confidence 5999999999999999999999 9999999999999999999864 458899999999
Q ss_pred ecCch-HHHHHHhcCCCCeeEEEeeCceeEeeC-CeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccc
Q 020312 81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE 158 (328)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (328)
....+ +.+++.+.++...+........+.+.+ |+.+++|.+..+.+...+.++..+ +...+. .+....
T Consensus 63 ~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~----- 132 (462)
T TIGR00562 63 LERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGK--LRAGMD---FIRPAS----- 132 (462)
T ss_pred ccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhh--HHhhhh---hccCCC-----
Confidence 87765 555555566655433222334455555 788888755334444444443221 111111 111100
Q ss_pred cccCCCCCHHHHHHhcCCChhH-HHHHhhhhh-cccCCCCCCCchHHHHHHHHHHH-------Hhhh------------c
Q 020312 159 GMDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLYA-------ESIA------------R 217 (328)
Q Consensus 159 ~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~-------~~~~------------~ 217 (328)
.....|+.+|+++. +.+.+ ..++.+.+. ++. .+....++...+.++.... ..+. .
T Consensus 133 --~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~-~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 208 (462)
T TIGR00562 133 --PGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYA-GDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQL 208 (462)
T ss_pred --CCCCcCHHHHHHHh-cCHHHHHHHHHHHhccccc-CCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccc
Confidence 11348999999877 44444 556666553 222 1111111121111111110 0000 0
Q ss_pred cc-C-CCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC------C
Q 020312 218 FQ-G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY------L 288 (328)
Q Consensus 218 ~~-g-~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~------~ 288 (328)
+. + ...+..++||++++++++++.+. .++|+++++|++|..+ ++++ .|++ +|+++.||+||++++. .
T Consensus 209 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll 284 (462)
T TIGR00562 209 TAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR-GSNY-TLELDNGVTVETDSVVVTAPHKAAAGLL 284 (462)
T ss_pred cccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec-CCcE-EEEECCCcEEEcCEEEECCCHHHHHHHh
Confidence 00 0 11256788999999999987664 2789999999999987 5554 3555 6678999999988764 1
Q ss_pred ---cchhh----h-hccceeEEeeeehh
Q 020312 289 ---PNKVI----I-IMLIGFILIFLVRR 308 (328)
Q Consensus 289 ---~~~~~----~-~~~~~~~~~~~~~~ 308 (328)
++... + ...+..++.++++.
T Consensus 285 ~~~~~~~~~~l~~l~~~~~~~v~l~~~~ 312 (462)
T TIGR00562 285 SELSNSASSHLDKIHSPPVANVNLGFPE 312 (462)
T ss_pred cccCHHHHHHHhcCCCCceEEEEEEEch
Confidence 22221 1 45666777777654
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.92 E-value=1.1e-23 Score=193.10 Aligned_cols=271 Identities=12% Similarity=0.162 Sum_probs=160.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312 5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 82 (328)
.+|+|||||+|||+||++|+++| ++|+|||+++++||++.|.+. .++.+|+|++++..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~--------------------~g~~~d~G~~~~~~ 60 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK--------------------DGFPIELGPESFLA 60 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee--------------------CCeEEecChHHhcC
Confidence 37999999999999999999988 999999999999999999864 46889999987765
Q ss_pred Cc-hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCC-----CChhhHHHHHHHHHHHhhcccCCCcc
Q 020312 83 NG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPL-----MGIFEKRRARKFFIYVQDYDENDPKT 156 (328)
Q Consensus 83 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (328)
.+ .+...+.+.++...+........+.+.+|+.+.+|......+...+ ..++......+ ...... .+
T Consensus 61 ~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~-- 133 (451)
T PRK11883 61 RKPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLR---AAADLR--PP-- 133 (451)
T ss_pred CcHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHH---hhCccc--CC--
Confidence 54 4455555666654432222223355567777766632111111000 11111101001 001110 00
Q ss_pred cccccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCCCCCCCchHHHHHHHHHHH-------Hhh----hcc--cCC
Q 020312 157 HEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYA-------ESI----ARF--QGG 221 (328)
Q Consensus 157 ~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~-------~~~----~~~--~g~ 221 (328)
.....+..|+.+|+++. +++.. +.++.+.+ .++. .+....+....+..+..+. ..+ ... ...
T Consensus 134 -~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T PRK11883 134 -RWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYA-GDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTK 210 (451)
T ss_pred -CCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeec-CChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCC
Confidence 01123568999999875 55554 45555544 2322 1111112111111111111 000 000 012
Q ss_pred CeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC-------Ccchhh
Q 020312 222 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY-------LPNKVI 293 (328)
Q Consensus 222 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~-------~~~~~~ 293 (328)
..++++++|++.+++++++.+... +|+++++|++|+.+ ++.+ .|++ +|+++.||+||++++. .++++.
T Consensus 211 ~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~~~ 286 (451)
T PRK11883 211 GVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS-GDGY-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAF 286 (451)
T ss_pred CceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc-CCeE-EEEECCCCEEEcCEEEECCCHHHHHHhccChhHH
Confidence 346788999999999998765433 89999999999987 5554 4554 7888999999998775 122221
Q ss_pred ----h-hccceeEEeeeehhh
Q 020312 294 ----I-IMLIGFILIFLVRRI 309 (328)
Q Consensus 294 ----~-~~~~~~~~~~~~~~~ 309 (328)
+ ...+..+++++++..
T Consensus 287 ~~~~~~~~~~~~~v~l~~~~~ 307 (451)
T PRK11883 287 ALFKTIPSTSVATVALAFPES 307 (451)
T ss_pred HHHhCCCCCceEEEEEEeccc
Confidence 2 345666888888765
No 16
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-23 Score=177.31 Aligned_cols=282 Identities=34% Similarity=0.657 Sum_probs=231.5
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchH--------HHHhh------------hc-CC--
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI--------QLWKR------------FR-GN-- 58 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------~~~~~------------~~-~~-- 58 (328)
|.+|||||||-|+.-...|...++.|.+|+-|+.+.+.||..+|+.+. .+... .+ ++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~ 85 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAP 85 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCC
Confidence 567999999999999999999999999999999999999999888765 21111 01 00
Q ss_pred ----------------CCCC-C---------------ccCCCCCeEEecCcceEecCchHHHHHHhcCCCCeeEEEeeCc
Q 020312 59 ----------------EQPP-A---------------HLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDG 106 (328)
Q Consensus 59 ----------------~~~~-~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (328)
+-+| . ....++.|++|+-|+.++..+.++..++++++++|.+|+..+.
T Consensus 86 ~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r 165 (547)
T KOG4405|consen 86 PTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDR 165 (547)
T ss_pred CCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccch
Confidence 0001 0 0123467999999999999999999999999999999999999
Q ss_pred eeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhccc-CCCcccccccCCCCCHHHHHHhcCCChhHHHHHh
Q 020312 107 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIG 185 (328)
Q Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 185 (328)
.+....|+...+|.+..+.|.+.-+++.+|+.+++|+.++.++.. ..+... ......++.+|++..++.+.++.++.
T Consensus 166 ~l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~--~~~~e~~F~EyL~~~rltp~lqs~vl 243 (547)
T KOG4405|consen 166 ILAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEY--VEFRERPFSEYLKTMRLTPKLQSIVL 243 (547)
T ss_pred hhcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHH--HHhhcCcHHHHHHhcCCChhhHHHHH
Confidence 988888999999999999999999999999999999999999842 222211 12355699999999999999999888
Q ss_pred hhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCc
Q 020312 186 HALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK 265 (328)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~ 265 (328)
+++++...+. ......+.+...|+.++++| |+.||.+|.+|.+.|++.+.+.|.-.|+-.-+..+|+.|..+ .+.
T Consensus 244 ~aIaM~~~~~---~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivld-k~s 318 (547)
T KOG4405|consen 244 HAIAMLSESQ---LTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLD-KES 318 (547)
T ss_pred HHHHhcCccc---ccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeec-ccc
Confidence 8877654321 34567788899999999999 999999999999999999999999999999999999999998 433
Q ss_pred EE---EEEecCceEEcCEEEECCCCCcc
Q 020312 266 VV---GVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 266 v~---~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
.. ++...|+++.|+++|+.+.++|.
T Consensus 319 ~~~~~~l~s~g~ri~~k~~v~s~~y~pe 346 (547)
T KOG4405|consen 319 LDCKAILDSFGQRINAKNFVVSPSYAPE 346 (547)
T ss_pred cchhhhHhhhcchhcceeeeecCccccc
Confidence 32 34447889999999999998775
No 17
>PLN02612 phytoene desaturase
Probab=99.92 E-value=3e-23 Score=193.06 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=172.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
..+|+|||||++||+||++|+++|++|+|+|+++++||++.++... .++.+|.|.|++...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~ 153 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA 153 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence 5799999999999999999999999999999999999999987531 458899999999876
Q ss_pred ch-HHHHHHhcCCCCeeEEEeeCceeEee--CCeEE--EcCC---Cch----hhhc-CCCCChhhHHHHHHHHHHHhhcc
Q 020312 84 GA-LVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVPA---TDM----EALK-SPLMGIFEKRRARKFFIYVQDYD 150 (328)
Q Consensus 84 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~--~g~~~--~~~~---~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (328)
.+ +.+.+.+.++...+.+......+.+. .+... .+|. ... ..+. ...+++.++... .........
T Consensus 154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~--~~~~~~~~~ 231 (567)
T PLN02612 154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKF--AIGLLPAIV 231 (567)
T ss_pred CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHH--HHhhhHHhc
Confidence 44 44555566665554443322222221 12221 1221 100 1110 111222221110 000000000
Q ss_pred cCCCcccccccCCCCCHHHHHHhcCCChhHH-HHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeec
Q 020312 151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTI-DFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 228 (328)
Q Consensus 151 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~ 228 (328)
...+ .....+..|+.+|+++.++++.+. +++.+++ +++.. +....+....+..+..+ +... ......++.
T Consensus 232 ~~~~---~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~-~p~~~S~~~~l~~l~~~---l~~~-~gs~~~~~~ 303 (567)
T PLN02612 232 GGQA---YVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFI-NPDELSMQCILIALNRF---LQEK-HGSKMAFLD 303 (567)
T ss_pred ccch---hhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-CHHHhhHHHHHHHHHHH---Hhcc-CCceEeeec
Confidence 0000 011336799999999999988774 4666544 22221 11111222222222222 2211 234455666
Q ss_pred CCc-CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC------Ccc-----h----
Q 020312 229 YGL-GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY------LPN-----K---- 291 (328)
Q Consensus 229 gG~-~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~------~~~-----~---- 291 (328)
|+. ..++++|++.++++|++|++|++|++|+.++++.++++++ +|+.++||+||++.+. +++ .
T Consensus 304 G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~ 383 (567)
T PLN02612 304 GNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKK 383 (567)
T ss_pred CCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHH
Confidence 664 6799999999999999999999999999864666777776 7888999999988754 121 1
Q ss_pred hhh-hccceeEEeeeehhhhHHHhhheee
Q 020312 292 VII-IMLIGFILIFLVRRILRFFLKHLSI 319 (328)
Q Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (328)
+.+ ...+.+++++++++....-..|+.+
T Consensus 384 l~~l~~~~v~~v~l~~dr~~~~~~~~~~~ 412 (567)
T PLN02612 384 LDKLVGVPVINVHIWFDRKLKNTYDHLLF 412 (567)
T ss_pred HHhcCCCCeEEEEEEECcccCCCCCceee
Confidence 112 4667889999999986422344444
No 18
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.90 E-value=1.8e-21 Score=177.89 Aligned_cols=280 Identities=16% Similarity=0.138 Sum_probs=164.5
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCch
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA 85 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 85 (328)
+|+|||||++||+||++|+++|++|+|+|+++++||+++++... .++.+|.|+|++....+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~~~~ 61 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG-------------------DGNHIEMGLHVFFGCYA 61 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC-------------------CCceEeeceEEecCchH
Confidence 58999999999999999999999999999999999999987421 46889999999886644
Q ss_pred -HHHHHHhcCCCCeeEEEeeCceeEeeCCeEEE--------cCC-CchhhhcCCCCChhhHHHHHHHH---HHHhhcccC
Q 020312 86 -LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK--------VPA-TDMEALKSPLMGIFEKRRARKFF---IYVQDYDEN 152 (328)
Q Consensus 86 -~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 152 (328)
+.+.+.+.++.+.+........+...++.... .|- .-...+.....++.++-.+.... ...+.....
T Consensus 62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~ 141 (474)
T TIGR02732 62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY 141 (474)
T ss_pred HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence 34444456665544333211112212233211 110 11122333444443322211111 111111000
Q ss_pred CCcccccccCCCCCHHHHHHhcCCChh-HHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCc
Q 020312 153 DPKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL 231 (328)
Q Consensus 153 ~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~ 231 (328)
.......-..+.+|+.+|+++.+.++. +..++.+.+......+....+....+..+..+. ... ..+...+++||.
T Consensus 142 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~--~~~--~~s~~~~~~g~~ 217 (474)
T TIGR02732 142 DGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA--AKT--EASKLRMLKGSP 217 (474)
T ss_pred chhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hCC--CcceeeeecCCc
Confidence 000000002256999999999999886 567787765322111111112222222222111 111 234567788887
Q ss_pred Cc-HHHHHHHHHHHcCcEEEcCcceeEEEecC--CC--cEEEEEe-cC---ceEEcCEEEECCCC------Ccc------
Q 020312 232 GE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS-EG---ETAKCKKVVCDPSY------LPN------ 290 (328)
Q Consensus 232 ~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~--~v~~v~~-~g---~~~~ad~vV~~~~~------~~~------ 290 (328)
.. +.+++.+.+++.|++|+++++|++|+.+. ++ ++++|++ ++ +++.||+||++.+. +++
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~ 297 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFE 297 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCH
Confidence 66 77889999999999999999999999862 12 3677666 33 45899999988765 232
Q ss_pred ---hhhh-hccceeEEeeeehh
Q 020312 291 ---KVII-IMLIGFILIFLVRR 308 (328)
Q Consensus 291 ---~~~~-~~~~~~~~~~~~~~ 308 (328)
.+.. ...+..++++.+++
T Consensus 298 ~~~~l~~l~~~pi~~v~l~~~~ 319 (474)
T TIGR02732 298 EFDNIYKLDAVPVATVQLRYDG 319 (474)
T ss_pred HHhhHhcCCCCCeEEEEEEecc
Confidence 1122 44677788888764
No 19
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.89 E-value=3e-21 Score=176.72 Aligned_cols=276 Identities=15% Similarity=0.148 Sum_probs=161.6
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc-
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 84 (328)
+|+|||||++||+||++|+++|++|+|+|+++++||++.|... ..++.+|.|++++....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~-------------------~~g~~~d~G~~~~~~~~~ 61 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKD-------------------EDGDWYETGLHIFFGAYP 61 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEC-------------------CCCCEEEcCcceeccCCc
Confidence 5899999999999999999999999999999999999988742 13578999999987654
Q ss_pred hHHHHHHhcCCCCeeEEEeeCceeEee--CCeEE--EcCC--Cchhh----hc-CCCCChhhHHHHHHHHHHHhhcccCC
Q 020312 85 ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVPA--TDMEA----LK-SPLMGIFEKRRARKFFIYVQDYDEND 153 (328)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--~g~~~--~~~~--~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (328)
.+.+.+.+.++...+.+......+... ++... ..+. ..... +. ....++.++..+. ...........
T Consensus 62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 139 (453)
T TIGR02731 62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFA--IGLLPAIVRGQ 139 (453)
T ss_pred hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHH--HHhHHHHhcCc
Confidence 445555566765554433322212111 12221 1121 00111 10 0112221211111 00100000000
Q ss_pred CcccccccCCCCCHHHHHHhcCCChhHH-HHHhhhh-hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC-
Q 020312 154 PKTHEGMDLTRVTTRELIAKYGLDDNTI-DFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG- 230 (328)
Q Consensus 154 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG- 230 (328)
+ .....++.|+.+|+++.++++.+. .++.+++ +++..+ ....+....+..+..+ +... ......+..|+
T Consensus 140 ~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~-p~~~S~~~~~~~l~~~---~~~~-~g~~~~~~~g~~ 211 (453)
T TIGR02731 140 K---YVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFIN-PDELSMTVVLTALNRF---LQER-HGSKMAFLDGAP 211 (453)
T ss_pred c---chhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH---HhcC-CCCeeEeecCCC
Confidence 0 011236799999999999999864 4666654 332211 1011112212122221 1111 12222344444
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc-----eEEcCEEEECCCC------Ccch-----hh
Q 020312 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSY------LPNK-----VI 293 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~-----~~~ad~vV~~~~~------~~~~-----~~ 293 (328)
++.++++|.+.+++.|++|++|++|++|+.++++++++|++ +++ ++.||.||++.++ +|+. +.
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~ 291 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFF 291 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHH
Confidence 46799999999999999999999999998764666878877 555 7999999988764 2221 11
Q ss_pred h-----hccceeEEeeeehhhh
Q 020312 294 I-----IMLIGFILIFLVRRIL 310 (328)
Q Consensus 294 ~-----~~~~~~~~~~~~~~~~ 310 (328)
+ ...+.+++++.+++..
T Consensus 292 ~~~~~~~~~~~~~v~l~~~~~~ 313 (453)
T TIGR02731 292 QKLNGLEGVPVINVHIWFDRKL 313 (453)
T ss_pred HHhhcCCCCcEEEEEEEEcccc
Confidence 1 2457788899888864
No 20
>PLN02487 zeta-carotene desaturase
Probab=99.88 E-value=7.2e-21 Score=175.33 Aligned_cols=260 Identities=17% Similarity=0.150 Sum_probs=156.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG 84 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 84 (328)
.+|+|||||++||++|++|+++|++|+|+|+++++||++.++... .++.+|.|+|++....
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~-------------------~g~~~e~G~h~~~~~~ 136 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK-------------------NGNHIEMGLHVFFGCY 136 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec-------------------CCcEEecceeEecCCc
Confidence 599999999999999999999999999999999999999888421 4678899999987654
Q ss_pred -hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEE----cCCCch-----hhhcCCCCChhhHHHHHHH---HHHHhhccc
Q 020312 85 -ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK----VPATDM-----EALKSPLMGIFEKRRARKF---FIYVQDYDE 151 (328)
Q Consensus 85 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 151 (328)
++...+.+.++...+.+......+...++.... .|...+ ..+....+++.++-....- ...+.....
T Consensus 137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~ 216 (569)
T PLN02487 137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVD 216 (569)
T ss_pred HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccC
Confidence 455556666776554433211112222333311 121111 1122233332222111000 000000000
Q ss_pred CCCcccccccCCCCCHHHHHHhcCCChh-HHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC
Q 020312 152 NDPKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG 230 (328)
Q Consensus 152 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG 230 (328)
........-..+++|+.+|+++.+.++. +..++.+.+......+....+....+..+..+. ... ......+++||
T Consensus 217 ~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~---~~~-~~~~l~~~~Gg 292 (569)
T PLN02487 217 PDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA---TKT-EASLLRMLKGS 292 (569)
T ss_pred ccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh---hcC-CcceeeecCCC
Confidence 0000000012356999999999988875 467887765322222211112222222222111 011 23447888999
Q ss_pred cCc-HHHHHHHHHHHcCcEEEcCcceeEEEecC--CC--cEEEEEe--c--CceEEcCEEEECCCC
Q 020312 231 LGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS--E--GETAKCKKVVCDPSY 287 (328)
Q Consensus 231 ~~~-l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~--~v~~v~~--~--g~~~~ad~vV~~~~~ 287 (328)
+.. |++++++.++++|++|+++++|++|..+. ++ ++++|++ + ++.+.||.||++++.
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~ 358 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDV 358 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCH
Confidence 985 99999999999999999999999999872 22 3777776 3 346899999998775
No 21
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.85 E-value=8.5e-21 Score=164.25 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=44.2
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccch
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL 48 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~ 48 (328)
++..||||||+|++||++|++|.++|++|+|||+++++|||+.+.+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence 35789999999999999999999999999999999999999999864
No 22
>PLN02268 probable polyamine oxidase
Probab=99.84 E-value=1.5e-20 Score=171.28 Aligned_cols=235 Identities=16% Similarity=0.139 Sum_probs=123.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 83 (328)
.+|+|||||+|||+||++|.++|++|+|||+++++||++.|... .++.+|+|++|+...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~--------------------~g~~~d~G~~~i~~~~ 60 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYS--------------------FGFPVDMGASWLHGVC 60 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCc--------------------CCcccCCCCeeEeccC
Confidence 37999999999999999999999999999999999999998743 357899999999742
Q ss_pred --chHHHHHHhcCCCCeeEEEeeCceeEeeCC-eEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312 84 --GALVRVLIHTDVTKYLYFKAVDGSFVYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160 (328)
Q Consensus 84 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (328)
+++..++.+.++...- ......+.+..+ ..+.+.......+.......+. ..+.++......... .
T Consensus 61 ~~~~~~~l~~~lgl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~ 129 (435)
T PLN02268 61 NENPLAPLIGRLGLPLYR--TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVG-ETFERILEETEKVRD--------E 129 (435)
T ss_pred CCchHHHHHHHhCCceEe--ccCCccccccccccccceecCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHh--------c
Confidence 3455555555553220 111111111111 1000000000000000000000 111122222111100 0
Q ss_pred cCCCCCHHHHHHhcCCCh-------hHHHHHhhhh---hcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCC
Q 020312 161 DLTRVTTRELIAKYGLDD-------NTIDFIGHAL---ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG 230 (328)
Q Consensus 161 ~~~~~s~~~~~~~~~~~~-------~~~~~~~~~~---~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG 230 (328)
..+..|+.++++++.-.. ..++++...+ ..+...+....+ +..+ .. ...+.|.. ....+|
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls----~~~~---~~-~~~~~g~~--~~~~~G 199 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTIS----LKSW---DQ-EELLEGGH--GLMVRG 199 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCc----hhhc---CC-ccccCCCc--eeecCC
Confidence 125678888775542111 1122221111 111111110001 0000 00 00011221 345678
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~ 287 (328)
++.++++|++ +++|++|++|++|..+ ++.+. |++ +++++.||+||+++++
T Consensus 200 ~~~l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 200 YDPVINTLAK-----GLDIRLNHRVTKIVRR-YNGVK-VTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred HHHHHHHHhc-----cCceeCCCeeEEEEEc-CCcEE-EEECCCcEEEcCEEEEecCH
Confidence 8888888753 5689999999999987 55544 555 7778999999987654
No 23
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.83 E-value=5.8e-19 Score=159.95 Aligned_cols=239 Identities=13% Similarity=0.206 Sum_probs=142.2
Q ss_pred cccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 79 (328)
+.+|+|||||++||+||++|++. |++|+|||+++.+||++.+.... ..+|.++.|+..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~------------------~~Gy~~~~G~~~ 83 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNP------------------EKGYVARGGREM 83 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccc------------------cCCEEEECCCCc
Confidence 57999999999999999999995 68999999999999999876421 256888888775
Q ss_pred EecCchHHHHHHhc---------CCCCeeEEEeeCcee---Ee--eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHH
Q 020312 80 IIANGALVRVLIHT---------DVTKYLYFKAVDGSF---VY--NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY 145 (328)
Q Consensus 80 ~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (328)
......+.+++... -..+++.+...++.+ .+ .+|..+. ....++ ..+....++..
T Consensus 84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d----------~~~~~L-~~k~r~~Ll~l 152 (576)
T PRK13977 84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD----------TDKFGL-SKKDRKELLKL 152 (576)
T ss_pred cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE----------CcCCCC-CHHHHHHHHHH
Confidence 33333444444222 122444454444432 11 1222221 122222 22333444443
Q ss_pred HhhcccCCCcccccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEE
Q 020312 146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI 225 (328)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 225 (328)
+..-. -.++..++.||+++.++...+..++...++.. . ..++......+.+|...+....-.+...
T Consensus 153 ~l~~e---------~~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~FaF~---~--whSA~E~rry~~rf~~~~~~l~~~s~l~ 218 (576)
T PRK13977 153 LLTPE---------EKLDDKTIEDWFSPEFFETNFWYYWRTMFAFE---K--WHSALEMRRYMHRFIHHIGGLPDLSGLK 218 (576)
T ss_pred hccCH---------HHhCCcCHHHHHhhcCchhHHHHHHHHHHCCc---h--hhHHHHHHHHHHHHHHhhccCCcccccc
Confidence 32211 12478999999998777665555444433211 1 1223333333434422222221123333
Q ss_pred eecCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEec-CC--CcEEEEEe--cCc-----eEEcCEEEECC
Q 020312 226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-EE--GKVVGVTS--EGE-----TAKCKKVVCDP 285 (328)
Q Consensus 226 ~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~--~~v~~v~~--~g~-----~~~ad~vV~~~ 285 (328)
+.++. ..+++..|.+.++++|++|+++++|++|..+ ++ ++|+++.. +|+ ...+|.||++.
T Consensus 219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTn 289 (576)
T PRK13977 219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTN 289 (576)
T ss_pred CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeC
Confidence 43444 4679999999999999999999999999985 23 56888876 232 24577777543
No 24
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.81 E-value=2e-18 Score=143.46 Aligned_cols=250 Identities=16% Similarity=0.134 Sum_probs=145.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec-
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA- 82 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 82 (328)
..+|+|||+|++||||||.|+++ ++|+++|+++++||+++|...+- ..+++.+|.|...+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~----------------d~~g~~vDtGfiVyn~~ 70 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT----------------DGGGVFVDTGFIVYNER 70 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc----------------cCCceeecceeEEecCC
Confidence 47999999999999999999976 99999999999999999985320 1256788988888765
Q ss_pred C-chHHHHHHhcCCCCe---eEE--EeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcc
Q 020312 83 N-GALVRVLIHTDVTKY---LYF--KAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT 156 (328)
Q Consensus 83 ~-~~~~~~~~~~~~~~~---l~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (328)
. ..+.+++...+..-. +.+ .-..+.+.|...... ...-.....+...-....+...+.+-+. ....
T Consensus 71 tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~g~tgl----~~L~aqk~n~l~pRf~~mlaeiLrf~r~----~~~~ 142 (447)
T COG2907 71 TYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGLTGL----AGLLAQKRNLLRPRFPCMLAEILRFYRS----DLAP 142 (447)
T ss_pred CcchHHHHHHHcCCCCcccceeEEEEecCCceeeccCCCc----cchhhccccccchhHHHHHHHHHHHhhh----hccc
Confidence 3 345555555543211 111 111222222211100 0001111111111111122222222221 0011
Q ss_pred cccccCCCCCHHHHHHhcCCChhH-HHHHhhhh-hcccCC--CCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcC
Q 020312 157 HEGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDD--RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG 232 (328)
Q Consensus 157 ~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~ 232 (328)
.+.......++.+|+++.++++.+ .+++.|+. ++|.+. +....|+...+ ++...+.++.- .+...+..+.||..
T Consensus 143 ~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~nhGll~l-~~rp~wrtV~ggS~ 220 (447)
T COG2907 143 SDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTDNHGLLYL-PKRPTWRTVAGGSR 220 (447)
T ss_pred hhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHhccCceec-CCCCceeEcccchH
Confidence 111223568999999999999987 45777754 344321 11112222222 22222333332 23445566679988
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEEC
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 284 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~ 284 (328)
..++.|+ ..-+++|.++++|+.|.+- .+.++.+..+|++-++|.||.+
T Consensus 221 ~yvq~la---a~~~~~i~t~~~V~~l~rl-PdGv~l~~~~G~s~rFD~vViA 268 (447)
T COG2907 221 AYVQRLA---ADIRGRIETRTPVCRLRRL-PDGVVLVNADGESRRFDAVVIA 268 (447)
T ss_pred HHHHHHh---ccccceeecCCceeeeeeC-CCceEEecCCCCccccceeeee
Confidence 8888875 3346789999999999998 6666666668999999997743
No 25
>PLN02568 polyamine oxidase
Probab=99.81 E-value=2.9e-19 Score=164.67 Aligned_cols=75 Identities=11% Similarity=0.266 Sum_probs=62.6
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCC-----CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEec
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDG-----LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDM 75 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (328)
|++..||+|||||++||+||++|++.| ++|+|||+++++||++.|... .++.+|+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~--------------------~g~~~d~ 61 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEF--------------------GGERIEM 61 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEe--------------------CCeEEec
Confidence 456789999999999999999999887 999999999999999999864 4588999
Q ss_pred CcceEecC--chHHHHHHhcCC
Q 020312 76 IPKFIIAN--GALVRVLIHTDV 95 (328)
Q Consensus 76 g~~~~~~~--~~~~~~~~~~~~ 95 (328)
|++++... +++..++.+.++
T Consensus 62 G~~~~~g~~~~~~~~l~~~~g~ 83 (539)
T PLN02568 62 GATWIHGIGGSPVYKIAQEAGS 83 (539)
T ss_pred CCceeCCCCCCHHHHHHHHhCC
Confidence 99999853 455555555554
No 26
>PLN02676 polyamine oxidase
Probab=99.81 E-value=7.3e-19 Score=160.91 Aligned_cols=241 Identities=15% Similarity=0.238 Sum_probs=125.8
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (328)
..+||+|||||++||+||++|+++|. +|+|||+++++||++.+... .++.+|+|++|+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~--------------------~g~~~d~g~~~~~ 84 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANF--------------------AGVSVELGANWVE 84 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecC--------------------CCeEEecCCEEEE
Confidence 35899999999999999999999998 69999999999999988753 3578999999996
Q ss_pred c-----CchHHHHHHhcCCCCeeEEEeeC--ceeEe-eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCC
Q 020312 82 A-----NGALVRVLIHTDVTKYLYFKAVD--GSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND 153 (328)
Q Consensus 82 ~-----~~~~~~~~~~~~~~~~l~~~~~~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (328)
. .+++.+...+.++.... ...+ ...++ .+|+.. +....+.+. ..+..+.+....+....
T Consensus 85 ~~~~~~~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~g~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 151 (487)
T PLN02676 85 GVGGPESNPIWELANKLKLRTFY--SDFDNLSSNIYKQDGGLY--PKKVVQKSM---------KVADASDEFGENLSISL 151 (487)
T ss_pred cccCcccChHHHHHHhcCCceee--cCccccceeEECCCCCCC--CHHHHHHHH---------HHHHHHHHHHHHHHHhh
Confidence 4 23455555455543221 1111 11122 123222 100000000 01112222111111100
Q ss_pred CcccccccCCCCCH--HHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEee-cCC
Q 020312 154 PKTHEGMDLTRVTT--RELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-LYG 230 (328)
Q Consensus 154 ~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~gG 230 (328)
. ....+..++ .+.+.+.. +..........+... ..+..++...++..+.. ....... |...++.. ++|
T Consensus 152 ~----~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~S~~~~~~-~~~~~~~-g~~~~~~~~~~G 222 (487)
T PLN02676 152 S----AKKAVDISILTAQRLFGQV-PKTPLEMVIDYYNYD--YEFAEPPRVTSLKNTEP-NPTFVDF-GEDEYFVADPRG 222 (487)
T ss_pred c----ccCCCCccHHHHHHHHhhC-CCCHHHHHHHHHhcc--ceeccCccccchhhcCc-ccccccC-CCceEEeecCCC
Confidence 0 001134455 22333321 111111111111000 00011111111111000 0011111 22333332 689
Q ss_pred cCcHHHHHHHHHHHc------CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312 231 LGELPQAFARLSAVY------GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~------G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~ 287 (328)
+++|++.|++.+.+. +.+|++|++|++|..+ ++.| .|++ +|++++||+||++.++
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV-~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGV-TVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcE-EEEECCCCEEEeCEEEEccCh
Confidence 999999998765432 3679999999999988 5554 4555 7778999999998764
No 27
>PLN02529 lysine-specific histone demethylase 1
Probab=99.80 E-value=5.7e-19 Score=166.09 Aligned_cols=236 Identities=16% Similarity=0.180 Sum_probs=131.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
+.||+|||||++||+||..|+++|++|+|+|+++++||++.|...+. ....+.+|+|+.|++..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~----------------~g~~~~~DlGaswi~g~ 223 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR----------------KGQFAAVDLGGSVITGI 223 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC----------------CCCceEEecCCeecccc
Confidence 57999999999999999999999999999999999999999886420 01125889999999865
Q ss_pred c--hHHHHHHhcCCCCeeEEEeeCceeEe-eCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCcccccc
Q 020312 84 G--ALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160 (328)
Q Consensus 84 ~--~~~~~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (328)
. ++.....+.++.-+ .. .+....+ .+|...... .+. .+...++ ..+.++.+.......
T Consensus 224 ~~npl~~la~~lgl~~~-~~--~~~~~~~~~~G~~v~~~---~~~---~~~~~~~-~~l~~~~~l~~~~~~--------- 284 (738)
T PLN02529 224 HANPLGVLARQLSIPLH-KV--RDNCPLYKPDGALVDKE---IDS---NIEFIFN-KLLDKVTELRQIMGG--------- 284 (738)
T ss_pred ccchHHHHHHHhCCCcc-cc--CCCceEEeCCCcCcchh---hhh---hHHHHHH-HHHHHHHHHHHhccc---------
Confidence 3 33333333333211 01 1111122 233332111 010 0000111 111122111111110
Q ss_pred cCCCCCHHHHHHhcC------CChhHHHHHhhhhh-cccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCc
Q 020312 161 DLTRVTTRELIAKYG------LDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 233 (328)
Q Consensus 161 ~~~~~s~~~~~~~~~------~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~ 233 (328)
..+..|+.+++++.. +++..++++..... +... . ......+. ...|..... +..........||+++
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a--~--~~~~s~LS-l~~~~~~~~-~e~~G~~~~i~GG~~~ 358 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYA--N--AGCLSDLS-AAYWDQDDP-YEMGGDHCFLAGGNWR 358 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhcee--c--CCChHHhh-hhHhhhccc-cccCCceEEECCcHHH
Confidence 125678999886543 33333333332221 1110 0 00011111 111111100 1122345677899999
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~ 287 (328)
|+++|++ +..|++|++|++|..+ ++.| .|+++++++.||+||+|.++
T Consensus 359 Li~aLA~-----~L~IrLnt~V~~I~~~-~dGV-tV~t~~~~~~AD~VIVTVPl 405 (738)
T PLN02529 359 LINALCE-----GVPIFYGKTVDTIKYG-NDGV-EVIAGSQVFQADMVLCTVPL 405 (738)
T ss_pred HHHHHHh-----cCCEEcCCceeEEEEc-CCeE-EEEECCEEEEcCEEEECCCH
Confidence 9999874 3569999999999998 5554 45566678999999998764
No 28
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.80 E-value=1.5e-18 Score=163.93 Aligned_cols=239 Identities=14% Similarity=0.164 Sum_probs=130.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
..+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....+ ....+.+|+|+.|+...
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g----------------~~~~~~~d~Gas~i~g~ 301 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKG----------------DGVVAAADLGGSVLTGI 301 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCC----------------CCcceeccCCceeecCC
Confidence 47999999999999999999999999999999999999999986531 11235789999999765
Q ss_pred c--hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhccc-CCCcccccc
Q 020312 84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-NDPKTHEGM 160 (328)
Q Consensus 84 ~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (328)
. ++.....+.++... ... ....+.+.+|..+... +... .. ..+..+++...++.. ..+ ..
T Consensus 302 ~~npl~~l~~~lgl~~~-~~~-~~~~~~~~dG~~~~~~------~~~~----v~-~~f~~lL~~~~klr~~~~~----~~ 364 (808)
T PLN02328 302 NGNPLGVLARQLGLPLH-KVR-DICPLYLPDGKAVDAE------IDSK----IE-ASFNKLLDRVCKLRQAMIE----EV 364 (808)
T ss_pred CccHHHHHHHHcCCceE-ecC-CCceEEeCCCcCcchh------hhhh----HH-HHHHHHHHHHHHHHHhhhh----cc
Confidence 2 34344444554321 111 1111222344433111 0000 00 011122222111100 000 00
Q ss_pred cCCCCCHHHHHHhc------CCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcH
Q 020312 161 DLTRVTTRELIAKY------GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL 234 (328)
Q Consensus 161 ~~~~~s~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l 234 (328)
.....|+.++++++ ..++....++.+.++.. .+........+. +..+.... .+.....+....||++.|
T Consensus 365 ~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanl---E~~~gs~ls~LS-l~~w~qd~-~~e~~G~~~~v~GG~~~L 439 (808)
T PLN02328 365 KSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANL---EYANASLMSNLS-MAYWDQDD-PYEMGGDHCFIPGGNDTF 439 (808)
T ss_pred cccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH---hccchhhHHHHH-hhhhhccc-cccCCCeEEEECCcHHHH
Confidence 11346788887633 12222223332222100 000011111111 11111100 011123356778999999
Q ss_pred HHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312 235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (328)
Q Consensus 235 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~ 287 (328)
+++|++.+ .|++|++|++|..+ ++.+ .|.++|+++.||+||+|.++
T Consensus 440 i~aLa~~L-----~I~ln~~V~~I~~~-~dgV-~V~~~G~~~~AD~VIvTvPl 485 (808)
T PLN02328 440 VRELAKDL-----PIFYERTVESIRYG-VDGV-IVYAGGQEFHGDMVLCTVPL 485 (808)
T ss_pred HHHHHhhC-----CcccCCeeEEEEEc-CCeE-EEEeCCeEEEcCEEEECCCH
Confidence 99997643 39999999999997 5554 34457889999999998765
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=7.2e-19 Score=159.42 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=58.7
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEec
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 82 (328)
++.+|||||||+|||+||.+|.+.|++|+|||+++++|||+.|.+.. .+-.+|+|.+++..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~-------------------~~~~vd~Gas~~~g 74 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE-------------------GGDHVDLGASVLTG 74 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC-------------------CCCeeecCCceecC
Confidence 35799999999999999999999999999999999999999999752 22369999999987
Q ss_pred Cch-HHHHHH
Q 020312 83 NGA-LVRVLI 91 (328)
Q Consensus 83 ~~~-~~~~~~ 91 (328)
... .+..+.
T Consensus 75 ~~~npl~~l~ 84 (501)
T KOG0029|consen 75 VYNNPLALLS 84 (501)
T ss_pred cCccHHHHHH
Confidence 643 444443
No 30
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.78 E-value=4.9e-17 Score=147.69 Aligned_cols=259 Identities=16% Similarity=0.155 Sum_probs=148.7
Q ss_pred HHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCchH-HHHHHhcCCC
Q 020312 18 ILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL-VRVLIHTDVT 96 (328)
Q Consensus 18 ~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~ 96 (328)
+||++|+++|++|+|||+++++||++.|.+.++ .++.+|.|++++...++. .+++.+.++.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g------------------~~~~~d~G~~~~~~~~~~~~~l~~~lgl~ 62 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG------------------LGQTIDNGQHVLLGAYTNLLALLRRIGAE 62 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCC------------------CCcceecCCEEEEcccHHHHHHHHHhCCc
Confidence 589999999999999999999999999986531 134589999999876544 4444445655
Q ss_pred CeeEEEeeCceeEe-e-CCeE--EE---cCCC-c-hhhh-cCCCCChhhHHHHHHHHHHHhhcccCCCcccccccCCCCC
Q 020312 97 KYLYFKAVDGSFVY-N-KGKV--HK---VPAT-D-MEAL-KSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVT 166 (328)
Q Consensus 97 ~~l~~~~~~~~~~~-~-~g~~--~~---~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 166 (328)
..+.... ..+.+ . ++.. +. ++.. . ...+ ....++..++..+.+....+..... ...+..|
T Consensus 63 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~s 132 (419)
T TIGR03467 63 PRLQGPR--LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRF--------RALDDTT 132 (419)
T ss_pred hhhhccc--CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCc--------cccCCCC
Confidence 4433211 11222 1 2221 11 1110 0 0111 1122222222222222222211110 1236789
Q ss_pred HHHHHHhcCCChhHHH-HHhhhhh-cccCCCCCCCchHHHHHHHHHHH-HhhhcccCCCeEEeecCCcCcHH-HHHHHHH
Q 020312 167 TRELIAKYGLDDNTID-FIGHALA-LHRDDRYLNEPALDTVKRMKLYA-ESIARFQGGSPYIYPLYGLGELP-QAFARLS 242 (328)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~g~~~~~~~~gG~~~l~-~~l~~~~ 242 (328)
+.+|+++.++++.+.+ ++.+.+. ++. . ++...+...+.... ..+........+.+|+||++++. ++|++.+
T Consensus 133 ~~~~l~~~~~~~~~~~~~~~p~~~~~~~-~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l 207 (419)
T TIGR03467 133 VGDWLQAAGQSERLIERLWEPLLLSALN-T----PPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWL 207 (419)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHH
Confidence 9999999887877644 5555442 222 1 12111111111111 11211101335789999987765 5588888
Q ss_pred HHcCcEEEcCcceeEEEecCCCcEEEEE-ecCceEEcCEEEECCCC------Ccc-h----hhh-hccceeEEeeeehhh
Q 020312 243 AVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSY------LPN-K----VII-IMLIGFILIFLVRRI 309 (328)
Q Consensus 243 ~~~G~~i~~~~~V~~I~~~~~~~v~~v~-~~g~~~~ad~vV~~~~~------~~~-~----~~~-~~~~~~~~~~~~~~~ 309 (328)
++.|++|++|++|++|+.+ ++++..+. .+++.+.||+||++.+. +|. . +.+ ...+..+++++++..
T Consensus 208 ~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~v~l~~~~~ 286 (419)
T TIGR03467 208 DSRGGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDRA 286 (419)
T ss_pred HHcCCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCCHHHHHHhCCCchHHHHHhhcCCcceEEEEEEeCCC
Confidence 8899999999999999998 66654333 37788999999998764 233 2 222 345667888888876
Q ss_pred h
Q 020312 310 L 310 (328)
Q Consensus 310 ~ 310 (328)
.
T Consensus 287 ~ 287 (419)
T TIGR03467 287 V 287 (419)
T ss_pred c
Confidence 4
No 31
>PLN03000 amine oxidase
Probab=99.75 E-value=2.4e-17 Score=155.90 Aligned_cols=237 Identities=14% Similarity=0.156 Sum_probs=125.4
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
..+|+|||||++||+||+.|.+.|++|+|+|+++++||++.|....+ ...++.+|+|++|+...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g----------------~~~~~~~DlGas~i~g~ 247 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA----------------NRVGAAADLGGSVLTGT 247 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC----------------CCCceEeecCCeEEeCC
Confidence 47999999999999999999999999999999999999999986531 11357899999999865
Q ss_pred c--hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccCCCccccccc
Q 020312 84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD 161 (328)
Q Consensus 84 ~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (328)
. ++..+..+.++.-+ ... ....+...+|+.. +......+.. .+. .+..-....+......
T Consensus 248 ~~npl~~L~~qlgl~l~-~~~-~~~~ly~~~Gk~v--~~~~~~~ve~----~fn--~lLd~~~~lr~l~~~~-------- 309 (881)
T PLN03000 248 LGNPLGIIARQLGSSLY-KVR-DKCPLYRVDGKPV--DPDVDLKVEV----AFN--QLLDKASKLRQLMGDV-------- 309 (881)
T ss_pred CccHHHHHHHHcCCcee-ecC-CCCeEEEeCCcCC--chhhhhhHHH----HHH--HHHHHHHHHHHHhccc--------
Confidence 3 23333344444311 111 1122222345443 1110000000 011 1111011111111100
Q ss_pred CCCCCHHHHHH---hc---CCChhHHHHHhhhhh-cccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcH
Q 020312 162 LTRVTTRELIA---KY---GLDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL 234 (328)
Q Consensus 162 ~~~~s~~~~~~---~~---~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l 234 (328)
....|+.++++ ++ .+.+....++.+.+. +.. ........+. ...+.... .+.....+...+||++.|
T Consensus 310 ~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~----~~as~ls~LS-l~~wdqd~-~~e~~G~~~~v~GG~~~L 383 (881)
T PLN03000 310 SMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEY----ANAGLVSKLS-LAFWDQDD-PYDMGGDHCFLPGGNGRL 383 (881)
T ss_pred CcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhc----ccccCHHHHH-HHHhhhcc-cccCCCceEEeCCCHHHH
Confidence 02244444222 11 122211222211111 111 0001111111 11111100 111122355678999999
Q ss_pred HHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312 235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (328)
Q Consensus 235 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~ 287 (328)
+++|++.+ .|+++++|++|..+ ++.+ .|+++++++.||+||+|.++
T Consensus 384 ieaLa~~L-----~I~Ln~~Vt~I~~~-~dgV-~V~~~~~~~~AD~VIvTVPl 429 (881)
T PLN03000 384 VQALAENV-----PILYEKTVQTIRYG-SNGV-KVIAGNQVYEGDMVLCTVPL 429 (881)
T ss_pred HHHHHhhC-----CcccCCcEEEEEEC-CCeE-EEEECCcEEEeceEEEcCCH
Confidence 99998654 49999999999987 5554 35566678999999988765
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.74 E-value=1.3e-17 Score=143.10 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=62.2
Q ss_pred CCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312 221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (328)
Q Consensus 221 ~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~ 287 (328)
...+.||+||++.+..++++.+++.|++|++++.|.+|..+ +|++++|+. +|.+++++.||+|+.+
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCch
Confidence 55678999999999999999999999999999999999999 799999998 9999999999999886
No 33
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.70 E-value=2.5e-16 Score=134.65 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=141.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeE--EEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKV--LHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V--~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (328)
.++|+|||||++||++||+|++++-+| +|+|+++|+||+.+|... ..++.+|.||+-+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~-------------------~ng~ifE~GPrtlr 71 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRM-------------------QNGFIFEEGPRTLR 71 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccC-------------------CCceeeccCCCccC
Confidence 479999999999999999999998665 569999999999999432 26799999999998
Q ss_pred cCch----HHHHHHhcCCCCeeEEE-eeCc----eeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHHHhhcccC
Q 020312 82 ANGA----LVRVLIHTDVTKYLYFK-AVDG----SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN 152 (328)
Q Consensus 82 ~~~~----~~~~~~~~~~~~~l~~~-~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (328)
..++ ...++.++++.+.+... ...+ .+.+..|++..+|.+-.......+.++ .+.-...++....+-...
T Consensus 72 pag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~-~k~L~~a~l~e~fr~~~~ 150 (491)
T KOG1276|consen 72 PAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF-GKPLLEAFLRELFRKKVS 150 (491)
T ss_pred cCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcc-cchhHHHHHhhhccccCC
Confidence 7765 45555566776553322 2222 466678888888866444333333333 222333333222111101
Q ss_pred CCcccccccCCCCCHHHHHHhcCCChhH-HHHHhhhhh-cccCCCCCCCchHHHHHHHHHHHH-----------h-hhcc
Q 020312 153 DPKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAE-----------S-IARF 218 (328)
Q Consensus 153 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~~~~~-----------~-~~~~ 218 (328)
. +....|+.+|.++. +-+++ ..++.+++. ++. ++....++...+..+....+ . +.+-
T Consensus 151 ~-------~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyA-gD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~ 221 (491)
T KOG1276|consen 151 D-------PSADESVESFARRR-FGKEVADRLISPFIRGIYA-GDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARK 221 (491)
T ss_pred C-------CCccccHHHHHHHh-hhHHHHHHHHHHHhCcccc-CChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Confidence 1 22568999998776 33555 456666653 222 22111122222211111000 0 0000
Q ss_pred --------------cCCCeEEeecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCc
Q 020312 219 --------------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK 265 (328)
Q Consensus 219 --------------~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~ 265 (328)
...-..+-.+||++.+++++.+.+.+..+.+.+..+++.+.....++
T Consensus 222 ~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~ 282 (491)
T KOG1276|consen 222 RTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN 282 (491)
T ss_pred cCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence 01111244578999999999999988889999999999887653343
No 34
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.4e-16 Score=140.82 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=137.3
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC-
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 83 (328)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.|+... .+-..+.|-|.+...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~-------------------dg~~~E~glh~f~~~Y 61 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS-------------------DGNHVEHGLHVFFGCY 61 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC-------------------CCCeeeeeeEEechhH
Confidence 479999999999999999999999999999999999999999752 456778888888766
Q ss_pred chHHHHHHhcCCCCeeEEEeeCceeEee---CCeE--EEcCCC------chhhhcCCCCChhhHHHHHHHHHHHhhcccC
Q 020312 84 GALVRVLIHTDVTKYLYFKAVDGSFVYN---KGKV--HKVPAT------DMEALKSPLMGIFEKRRARKFFIYVQDYDEN 152 (328)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~g~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (328)
.+++.++.+......+.+......++-. .|.. +..|.. ..+.+..+....- ...++. -.....
T Consensus 62 ~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~---~~~~~~---~~l~~~ 135 (485)
T COG3349 62 YNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRR---EKIRFV---LRLGDA 135 (485)
T ss_pred HHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHH---HHhHHh---hccccc
Confidence 4667777666665444443322222111 1221 111110 0111111211111 111111 111000
Q ss_pred CC-cccccccCCCCCHHHHHHhcCCChhH-HHHHhhh-hhccc--CCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEee
Q 020312 153 DP-KTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGHA-LALHR--DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP 227 (328)
Q Consensus 153 ~~-~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~-~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~ 227 (328)
+- ......++++.+..||+++.+.+... ++.+.+. .++-. .+......+...+..+. +... +..-....
T Consensus 136 ~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~-----~~~~-~~~i~~~~ 209 (485)
T COG3349 136 PIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFL-----IVTL-EASILRNL 209 (485)
T ss_pred cchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHH-----Hhcc-Ccchhhhh
Confidence 00 11112245889999999998766654 4545442 22221 11111111122211111 1111 11222333
Q ss_pred cCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEecC---CCcEEEEEecCceEE
Q 020312 228 LYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGETAK 277 (328)
Q Consensus 228 ~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---~~~v~~v~~~g~~~~ 277 (328)
+|+ ...++..+.+.+++.|.+++.+.+|+.|..+. +..++++...+...+
T Consensus 210 ~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e 263 (485)
T COG3349 210 RGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQE 263 (485)
T ss_pred cCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceE
Confidence 555 35688889999999999999999999999873 345777776544433
No 35
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.68 E-value=2.2e-16 Score=137.10 Aligned_cols=69 Identities=17% Similarity=0.386 Sum_probs=57.1
Q ss_pred CcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEe
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (328)
.+.+|||||||+|||+||-+|.+.| .+|+|+|+++|+|||+.|+.. .+-.+|+|++|++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~--------------------~d~~ielGAqwih 79 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPF--------------------ADGVIELGAQWIH 79 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEc--------------------CCCeEeecceeec
Confidence 3578999999999999999999666 789999999999999999965 2348999999999
Q ss_pred c-Cc-hHHHHHH
Q 020312 82 A-NG-ALVRVLI 91 (328)
Q Consensus 82 ~-~~-~~~~~~~ 91 (328)
+ .+ ++.++..
T Consensus 80 G~~gNpVY~la~ 91 (498)
T KOG0685|consen 80 GEEGNPVYELAK 91 (498)
T ss_pred CCCCChHHHHHH
Confidence 7 43 4444444
No 36
>PLN02976 amine oxidase
Probab=99.66 E-value=2e-15 Score=147.39 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=52.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
.+||+|||||++|+++|++|.++|++|+|||+++++||++.+.... .++.+|+|+.++...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~-------------------~g~pvDlGas~i~G~ 753 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSS-------------------LSVPVDLGASIITGV 753 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecccc-------------------CCceeccCcEEEecc
Confidence 4799999999999999999999999999999999999998876421 346778888888753
No 37
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.60 E-value=1.1e-15 Score=139.29 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=50.7
Q ss_pred hhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCch-HHHHHHh
Q 020312 14 LKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA-LVRVLIH 92 (328)
Q Consensus 14 ~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~ 92 (328)
+|||+||++|+++|++|+|||+++++||++.|.+.+ . .++.+|.|++++..... ....+.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~-----------------~-~g~~~e~G~~~~~~~~~~~~~~~~~ 62 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFD-----------------N-PGFTFELGAHRFFGMYPNLLNLIDE 62 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEET-----------------T-TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCC-----------------c-cceeecCCcccccccchhhHHHHHH
Confidence 699999999999999999999999999999999763 0 27999999999986544 3444444
Q ss_pred cCCC
Q 020312 93 TDVT 96 (328)
Q Consensus 93 ~~~~ 96 (328)
.+..
T Consensus 63 l~~~ 66 (450)
T PF01593_consen 63 LGLE 66 (450)
T ss_dssp HTHH
T ss_pred hhhc
Confidence 4443
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.58 E-value=4e-15 Score=132.17 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=54.8
Q ss_pred EEeecCC---cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292 (328)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~ 292 (328)
++.+.+| ...++++|.+.+++.|++|+.+++|++|..+ ++++.+|.++.+.+.||+||.+++.....+
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~s~~l 206 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAWSPQL 206 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGGHHHH
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEecccccceee
Confidence 4455566 5789999999999999999999999999999 888888999555699999999888765554
No 39
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=122.09 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=48.9
Q ss_pred EEeec-CCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCC
Q 020312 224 YIYPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (328)
Q Consensus 224 ~~~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~ 286 (328)
-++|. ...+.|+++|...+++.|++++++++|.+|+.+ + ....+.+ ++++++||.+|++.+
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCCCCEEEccEEEEecC
Confidence 34555 446789999999999999999999999999988 5 4455666 666899999776443
No 40
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.57 E-value=7.8e-15 Score=96.43 Aligned_cols=55 Identities=22% Similarity=0.493 Sum_probs=48.6
Q ss_pred EECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 9 VLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 9 IvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
|||||++||+||++|+++|++|+|+|+++++||++.+... .++.+|.|++++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~--------------------~g~~~d~g~~~~~~~ 55 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI--------------------PGYRFDLGAHYFFPP 55 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE--------------------TTEEEETSS-SEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE--------------------CCEEEeeccEEEeCC
Confidence 8999999999999999999999999999999999999865 348999999998774
No 41
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.57 E-value=3.4e-14 Score=125.38 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=52.2
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCce-EEcCEEEECCCCCcchhhh
Q 020312 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYLPNKVII 294 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~-~~ad~vV~~~~~~~~~~~~ 294 (328)
...++.++++.+.++|+++++|++|+.|+.+ ++.++.+.+ +|++ ++|+.||.+++....++.+
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~-~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~ 216 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQ-SDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQ 216 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEe-CCceEEEEecCCcEEEEeeEEEECCchhHHHHHH
Confidence 4678999999999999999999999999998 444566666 6666 9999999999887766644
No 42
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.57 E-value=1.6e-14 Score=128.64 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=46.8
Q ss_pred EEeecCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCC
Q 020312 224 YIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (328)
Q Consensus 224 ~~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~ 286 (328)
.+||.-. ..++.+.|...++++|++|+++++|++|+.+ ++.+..|.+ +++.+.||+||++++
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE---
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecC
Confidence 4566543 5679999999999999999999999999998 778888999 889999999887644
No 43
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.54 E-value=9.8e-14 Score=124.83 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~ 292 (328)
..++++|.+.+++.|++++++++|++|..+ ++.+ .|.++++++.||.||++++.++..+
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g~i~ad~vV~A~G~~s~~l 207 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQGEYEARTLINCAGLMSDRL 207 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCCEEEeCEEEECCCcchHHH
Confidence 678999999999999999999999999876 5554 5666555899999999888766543
No 44
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.52 E-value=2e-13 Score=124.00 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=54.0
Q ss_pred EEeecCC---cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcch
Q 020312 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK 291 (328)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~ 291 (328)
.+.|..| ...++++|++.++++|++|+++++|++|+.+ ++.+++|++++.++.||+||++++.+..+
T Consensus 190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALGSYSTA 259 (416)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCCcchHH
Confidence 3455544 3468889999999999999999999999987 77777788877789999999888876543
No 45
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.51 E-value=9.1e-13 Score=115.92 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=66.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG 84 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 84 (328)
+||+|||||++||++|++|++.|.+|+|+|+++.+||++.+.... +....+.|++++....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~-------------------g~~~~~~G~h~f~t~~ 62 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE-------------------TILFHQYGPHIFHTNN 62 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC-------------------CceEEeecceeEecCc
Confidence 699999999999999999999999999999999999988775321 2233477888887665
Q ss_pred hHHHHHHhcCCCCeeEEEeeCceeEeeCCeEEEcCCC
Q 020312 85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT 121 (328)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 121 (328)
..+..+...-.. .-.+. .......+|+.++.|-.
T Consensus 63 ~~v~~~~~~~~~-~~~~~--~~~~~~~~g~~~~~P~~ 96 (377)
T TIGR00031 63 QYVWDYISPFFE-LNNYQ--HRVLALYNNLDLTLPFN 96 (377)
T ss_pred HHHHHHHHhhcc-cccee--EEEEEEECCeEEccCCC
Confidence 544433321111 11121 12345568889888853
No 46
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.51 E-value=3.4e-13 Score=124.07 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=46.7
Q ss_pred CCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEec-----CceEEcCEEEECCC
Q 020312 229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPS 286 (328)
Q Consensus 229 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~-----g~~~~ad~vV~~~~ 286 (328)
++...++..|.+.+++.|++++++++|++|..+ ++++++|.+. ...+.|+.||++.+
T Consensus 128 g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 128 GGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCC
Confidence 444678899999999999999999999999987 7888888752 23689999887655
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.51 E-value=1.9e-13 Score=122.61 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcch
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK 291 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~ 291 (328)
..+++.|.+.++++|++++.+++|++|..+ ++.+ .|+++++++.||+||++++.+...
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTAGAWTSK 202 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCcchHH
Confidence 468888888888999999999999999987 5554 466655689999988877765443
No 48
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.50 E-value=6.9e-13 Score=121.61 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=47.8
Q ss_pred EEeecCC---cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCc
Q 020312 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~ 289 (328)
.+.+.+| ..++++.|++.+++.|++|+.+++|++|+.. ..+.|+++++++.||+||++++.+.
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~~~v~t~~g~v~A~~VV~Atga~s 237 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG---QPAVVRTPDGQVTADKVVLALNAWM 237 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC---CceEEEeCCcEEECCEEEEcccccc
Confidence 3444444 3568999999999999999999999999743 3345777666899999988766543
No 49
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.46 E-value=2.6e-12 Score=116.27 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=46.9
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
..++.+|++.++++|++++.+++|++|+.++++.+++|+++.+.+.|++||++++.+..
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhhH
Confidence 35677788889999999999999999986535677778886668999998877665443
No 50
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.46 E-value=1.4e-12 Score=121.53 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cC--ceEEcCEEEECCCCCcchhh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNKVI 293 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g--~~~~ad~vV~~~~~~~~~~~ 293 (328)
..++.++++.++++|++++++++|++|..+ ++++++|++ ++ .+++||.||.+++.+..++.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~ 215 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIA 215 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHH
Confidence 467888888899999999999999999988 788877764 23 46999999999888766553
No 51
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.45 E-value=4.4e-12 Score=113.62 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
..++..+.+.+.+.|++++++++|++|+.+ ++. +.|+++++.+.||.||.+++.+..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTADGTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCCCEEEeeEEEEecCcchh
Confidence 457777888888899999999999999987 554 456675558999999987776543
No 52
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.45 E-value=5.4e-13 Score=107.92 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=41.8
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchH
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI 49 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~ 49 (328)
+|+|||+||+||+||+.|.++|.+|+|+||+.-+|||..|-+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~ 46 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD 46 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC
Confidence 69999999999999999999999999999999999999998753
No 53
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.44 E-value=4.1e-12 Score=115.07 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c----CceEEcCEEEECCCCCcch
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E----GETAKCKKVVCDPSYLPNK 291 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~----g~~~~ad~vV~~~~~~~~~ 291 (328)
..++..|.+.+++.|++++.+++|++|..+ ++.++.... + +.+++||+||++++.+..+
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~ 260 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA 260 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCCcChHH
Confidence 457788889999999999999999999987 565543222 2 2379999999888876543
No 54
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.41 E-value=2.6e-12 Score=122.91 Aligned_cols=63 Identities=21% Similarity=0.170 Sum_probs=48.3
Q ss_pred EEeecCC---cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~ 289 (328)
.+++.+| ...++++|.+.+++ |++++++++|++|..+ ++.+. |++ ++..+.||.||.+.+...
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCc
Confidence 4455555 25789999988888 9999999999999987 66654 666 555678999998777643
No 55
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.41 E-value=4.2e-12 Score=116.05 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHH----cC--cEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhh
Q 020312 232 GELPQAFARLSAV----YG--GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVI 293 (328)
Q Consensus 232 ~~l~~~l~~~~~~----~G--~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~ 293 (328)
..++++|++.+++ +| ++++++++|++|+.+ ++.++.|+++.+++.||.||++++.+..++.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G~i~A~~VVvaAG~~S~~La 277 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRGEIRARFVVVSACGYSLLFA 277 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCCEEEeCEEEECcChhHHHHH
Confidence 5689999999988 78 789999999999987 6777778886668999999998887665543
No 56
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.39 E-value=6e-12 Score=104.98 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCcEEEEEe-cCceEEcCEEEECCCCCcchhh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS-EGETAKCKKVVCDPSYLPNKVI 293 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~~~ 293 (328)
.+-..++...++++|+.|+.+..|+.++..+ ++..++|.| +|..+.|+.+|.+++.+-.++.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL 216 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLL 216 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhc
Confidence 4567778888999999999999999999653 556677777 7778999999988877655443
No 57
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=5.6e-12 Score=104.53 Aligned_cols=120 Identities=16% Similarity=0.273 Sum_probs=79.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcceEecC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 83 (328)
.+|++|||||++|+++|..|+++|++|+|+||++.+||+|.+...+ ..+--...-|||.++..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~-----------------~tGIlvHkYGpHIFHT~ 63 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADD-----------------QTGILVHKYGPHIFHTD 63 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCC-----------------CCCeEEeeccCceeecC
Confidence 3799999999999999999999999999999999999999887542 11333445589999988
Q ss_pred chHHHHHHhcCCCCeeEEEe-eCceeEeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHHH
Q 020312 84 GALVRVLIHTDVTKYLYFKA-VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY 145 (328)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (328)
+..+=.+... +.++.. ......+.+|..+.+|-. ...+..-+...+.+..++.+...
T Consensus 64 ~~~Vwdyv~~----F~e~~~Y~hrVla~~ng~~~~lP~n-l~ti~ql~G~~~~p~~a~~~i~~ 121 (374)
T COG0562 64 NKRVWDYVNQ----FTEFNPYQHRVLALVNGQLYPLPFN-LNTINQLFGKNFTPDEARKFIEE 121 (374)
T ss_pred chHHHHHHhh----hhhhhhhccceeEEECCeeeecccc-HHHHHHHhCccCCHHHHHHHHHH
Confidence 7544333321 111111 122244568888888854 44444322223444455555543
No 58
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.37 E-value=1.3e-11 Score=112.09 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~ 287 (328)
+-+.|.+.+++.|++++.+++|++|..+ ++.++++++++++++||.||.+.+.
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~g~~i~A~~VI~A~G~ 162 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAKTVILADGV 162 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcCCcEEECCEEEEEeCC
Confidence 3344556678889999999999999987 7777777777888999999876665
No 59
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.36 E-value=6.8e-12 Score=116.14 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.++||||||+|++|++||+.++++|.+|+||||...+||.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 468999999999999999999999999999999999998653
No 60
>PRK10015 oxidoreductase; Provisional
Probab=99.36 E-value=1.2e-11 Score=112.22 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~ 287 (328)
+-+.|.+.+++.|++++.+++|++|..+ +++++++.+++++++||.||.+.+.
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeCCeEEECCEEEEccCc
Confidence 4444666778889999999999999887 7777777777778999999987665
No 61
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.36 E-value=1.2e-11 Score=110.39 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCc
Q 020312 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~ 289 (328)
..++..|++.+.+. |++++.+++|++|+. + .|+++++.++||+||++++...
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGDVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCcEEeCEEEECCCCCh
Confidence 45778888877775 999999999999952 2 4667655789999998877653
No 62
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.35 E-value=1.9e-11 Score=109.98 Aligned_cols=64 Identities=28% Similarity=0.305 Sum_probs=50.5
Q ss_pred EeecCC---cCcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312 225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 225 ~~~~gG---~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
+.+..| ...+++++++.++++| ..+..+++|+.+..+ + +.+.|.++++++.||+||++++.+..
T Consensus 146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~~ 213 (387)
T COG0665 146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWAG 213 (387)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHHH
Confidence 444444 2468999999999999 567779999999987 5 78888886666999999988876544
No 63
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.35 E-value=2e-11 Score=113.07 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC----ceEEcCEEEECCCCCcchh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG----ETAKCKKVVCDPSYLPNKV 292 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g----~~~~ad~vV~~~~~~~~~~ 292 (328)
..++..++..++++|++++.+++|++|..+ ++. +.|++ ++ .++.|+.||.+++.+.+++
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 457777888889999999999999999987 554 44554 32 2589999999988876655
No 64
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.35 E-value=2.4e-11 Score=112.49 Aligned_cols=44 Identities=32% Similarity=0.483 Sum_probs=40.2
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
|++++||+|||||++|+++|++|+++|.+|+|+|+++..+|.++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 66789999999999999999999999999999999988777553
No 65
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.32 E-value=5.1e-11 Score=109.19 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEE-E-e-cC--ceEEcCEEEECCCCCcchhhh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-T-S-EG--ETAKCKKVVCDPSYLPNKVII 294 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v-~-~-~g--~~~~ad~vV~~~~~~~~~~~~ 294 (328)
..++++|++.++++|++++++++|++|+.++++.+... . + ++ .+++||+||++++.+..++.+
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~ 245 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQ 245 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHH
Confidence 67899999999999999999999999998623333322 1 2 23 369999999999887766543
No 66
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.32 E-value=1.6e-10 Score=106.03 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEE--e-cCc--eEEcCEEEECCCCCcchhhh
Q 020312 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EGE--TAKCKKVVCDPSYLPNKVII 294 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~--~-~g~--~~~ad~vV~~~~~~~~~~~~ 294 (328)
..++++|.+.+++.| ++++++++|++|+.++++.+.... + +++ +++|++||++++.+..++.+
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~ 251 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQ 251 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHH
Confidence 578999999999887 799999999999986344333221 2 343 69999999999887766653
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.31 E-value=5e-11 Score=99.86 Aligned_cols=40 Identities=38% Similarity=0.561 Sum_probs=37.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
++||+|||||++||+||++|+++|.+|+|+||+..+||.+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 6899999999999999999999999999999999888753
No 68
>PRK07121 hypothetical protein; Validated
Probab=99.30 E-value=6.3e-11 Score=109.67 Aligned_cols=57 Identities=26% Similarity=0.356 Sum_probs=45.6
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEc-CEEEECCCC
Q 020312 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSY 287 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~a-d~vV~~~~~ 287 (328)
...+++.|.+.+++.|++|+++++|++|..++++++++|+. +++ .+.| +.||++++-
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 35688999999999999999999999999874568888876 333 4788 888876553
No 69
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.30 E-value=3.9e-11 Score=100.84 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=37.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
++||+|||||++||+||++|+++|++|+|+|++..+||.+
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 5899999999999999999999999999999998888743
No 70
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.29 E-value=8.4e-11 Score=107.46 Aligned_cols=56 Identities=25% Similarity=0.206 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSY 287 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~~ 287 (328)
..+++.|.+.+++.|++++++++|++|..++++++++|+. +++ .+.+|.||++++-
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 4588999999999999999999999999874677887765 232 3688998876553
No 71
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.28 E-value=8e-11 Score=106.96 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=45.2
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCCCC
Q 020312 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL 288 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~~~ 288 (328)
...+.+.|.+.++++|++|+++++|+++.++ +++|++|.. +++ .+.|+.||++++-.
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~ 202 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGF 202 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence 3568899999999999999999999999998 889999876 244 47899988765443
No 72
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.28 E-value=1.5e-10 Score=109.51 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCcEEEEEe----cCc--eEEcCEEEECCCCCcchhh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EGE--TAKCKKVVCDPSYLPNKVI 293 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~----~g~--~~~ad~vV~~~~~~~~~~~ 293 (328)
..++.++++.++++|++++.+++|++|..++ ++++++|+. +++ ++.||.||.+++.+..++.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~ 300 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVR 300 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHH
Confidence 5688999999999999999999999998863 366777653 344 5899999999998766553
No 73
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.28 E-value=3.5e-11 Score=108.69 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c---Cc--eEEcCEEEECCCCCcchhhh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GE--TAKCKKVVCDPSYLPNKVII 294 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~---g~--~~~ad~vV~~~~~~~~~~~~ 294 (328)
..++-..++.+.++|.+++..++|+++..+ ++ +++|++ + |+ .++|+.||.+++++..++..
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~ 230 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE 230 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHH
Confidence 457778888899999999999999999998 66 899986 2 33 48899999999998776544
No 74
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.28 E-value=4.6e-11 Score=108.39 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=37.7
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
|..++||+|||+|.|||+||..+. +|.+|+||||.+..||.+
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s 42 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT 42 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence 666899999999999999999985 799999999999888753
No 75
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.27 E-value=7.7e-11 Score=106.05 Aligned_cols=43 Identities=28% Similarity=0.486 Sum_probs=39.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.+|||+|||||+||++||+.|+++|.+|+|+|+.+.+|-...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4799999999999999999999999999999999999886555
No 76
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.26 E-value=6.5e-10 Score=98.68 Aligned_cols=215 Identities=13% Similarity=0.213 Sum_probs=111.7
Q ss_pred cccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCCCCCcccccchHHHHhhhcCCCCCCCccCCCCCeEEecCcce
Q 020312 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 79 (328)
+.++=|||||+|+|+||.+|.+. |.+|.|||+.+.+||........ ..+|..-.| +.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~------------------~~GYv~RgG-R~ 62 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDP------------------ENGYVIRGG-RM 62 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCC------------------CCCeeecCC-cc
Confidence 45778999999999999999987 58999999999999987655321 123333222 22
Q ss_pred EecCchHHHHHHhcCC----------CCeeEEEeeCcee-----EeeCCeEEEcCCCchhhhcCCCCChhhHHHHHHHHH
Q 020312 80 IIANGALVRVLIHTDV----------TKYLYFKAVDGSF-----VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFI 144 (328)
Q Consensus 80 ~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (328)
+.....-.-.++.+-. .++..++..++.+ +..+|..... ..-++ +..++...+.+
T Consensus 63 ~~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------~~~~~-Ls~k~r~eL~k 132 (500)
T PF06100_consen 63 MEFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------DSKFG-LSEKDRMELIK 132 (500)
T ss_pred ccchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------cCcCC-CCHHHHHHHHH
Confidence 2111111112211100 0011111111111 1112221110 01122 23344444544
Q ss_pred HHhhcccCCCcccccccCCCCCHHHHHHhcCCChhHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeE
Q 020312 145 YVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY 224 (328)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 224 (328)
++-.-.+ .+...++.|++.+-.+...+..++.-..++ +.+ .++...-..+.+|...+....-.+..
T Consensus 133 L~l~~E~---------~L~~~~I~d~F~~~FF~SnFW~~W~T~FAF---qpW--hSa~E~rRyl~Rf~h~~~~l~~l~~l 198 (500)
T PF06100_consen 133 LLLTPEE---------DLGDKRIEDWFSESFFESNFWYMWSTMFAF---QPW--HSAVEFRRYLHRFIHEIPGLNDLSGL 198 (500)
T ss_pred HhcCCHH---------HhCcccHHHhcchhhhcCchhHhHHHhhcc---Ccc--hhHHHHHHHHHHHHHhcCCCCCcccc
Confidence 4332211 236788899887665555543333222221 111 12222222333443333222112333
Q ss_pred EeecCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEec
Q 020312 225 IYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD 261 (328)
Q Consensus 225 ~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~ 261 (328)
.+.+.. ..+++.+|.+.++++||+|++|+.|+.|..+
T Consensus 199 ~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~ 236 (500)
T PF06100_consen 199 DRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFD 236 (500)
T ss_pred ccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEE
Confidence 344444 4679999999999999999999999999986
No 77
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.25 E-value=2.9e-10 Score=103.70 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEE-EE-e-cCc--eEEcCEEEECCCCCcchhhh
Q 020312 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVG-VT-S-EGE--TAKCKKVVCDPSYLPNKVII 294 (328)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~-v~-~-~g~--~~~ad~vV~~~~~~~~~~~~ 294 (328)
..++++|++.+.+ .|++++++++|++|..++++.+.. ++ + +++ +++||+||++++.+..++..
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~ 252 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQ 252 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHH
Confidence 5688999888864 489999999999998762334332 21 3 332 69999999999988776654
No 78
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.24 E-value=1.1e-10 Score=108.94 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.++||||||+| +|++||..+++.|.+|+||||.+.+||.+..
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 47999999999 8999999999999999999999999997654
No 79
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.21 E-value=1.1e-10 Score=101.03 Aligned_cols=37 Identities=32% Similarity=0.547 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~GG 41 (328)
||+||||||.+|+++|.+|+++| .+|+|||+......
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 79999999999999999999998 69999999765443
No 80
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.20 E-value=1.9e-10 Score=103.48 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=44.8
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~ 287 (328)
...+.+.+.+.+++.|++++++++|++|..+ ++ .+.++++++.+.||.||++++.
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILATGG 158 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEECCCC
Confidence 3568888999999999999999999999876 44 4556667778999999877654
No 81
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.20 E-value=4.3e-10 Score=101.32 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~ 289 (328)
.+.+.|.+.+++.|++++++++|++|+.+ ++.+. +++ ++++++||.||.+.+..+
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 46677777788889999999999999987 55544 555 677899999998776654
No 82
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.20 E-value=5.4e-11 Score=107.49 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=55.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchhhh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVII 294 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~~~ 294 (328)
..+|++|+..++.+|+.|..|++|++|... .++..+|+|.-+.++|.+||.+++++.+.+.+
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~iet~~~VNaaGvWAr~Vg~ 248 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGSIETECVVNAAGVWAREVGA 248 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcceecceEEechhHHHHHhhh
Confidence 679999999999999999999999999998 66667999988899999999999998776544
No 83
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=2.5e-10 Score=107.31 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..|...|.+.+++.|+++++++.++++..+++|++++|.. +++ .+.|+.||++.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 203 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG 203 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 4588888888888899999999999999854688998874 343 478999886543
No 84
>PRK02106 choline dehydrogenase; Validated
Probab=99.18 E-value=9.4e-10 Score=103.42 Aligned_cols=36 Identities=33% Similarity=0.628 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHhhhh-CCCeEEEeccCC
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRND 37 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~ 37 (328)
..+||+||||||.+|+.+|.+|++ +|++|+|||++.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 346999999999999999999999 899999999974
No 85
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.18 E-value=6.1e-10 Score=104.32 Aligned_cols=44 Identities=34% Similarity=0.562 Sum_probs=40.4
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC--CCCCccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS 44 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~--~~GG~~~ 44 (328)
|-.++||+|||+|++||+||..++++|.+|+||||.+ ..||.+.
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 5678999999999999999999999999999999999 7888653
No 86
>PRK06847 hypothetical protein; Provisional
Probab=99.18 E-value=2.8e-10 Score=101.93 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~ 289 (328)
.+.+.|.+.+++.|++++++++|++|+.+ ++.+. +++ +++++.||.||.+.+..+
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~~-v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQD-DDGVT-VTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEEE-EEEcCCCEEEcCEEEECcCCCc
Confidence 46677777788889999999999999987 55543 444 788899999998777643
No 87
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.9e-11 Score=96.19 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=38.7
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
+.||+|||||+|||+|||+|+++|.+|+|+|++..+||.++-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG 71 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence 479999999999999999999999999999999999996543
No 88
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.18 E-value=3.1e-10 Score=106.21 Aligned_cols=42 Identities=31% Similarity=0.500 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.++||+|||+|.+|++||+.|+++|.+|+|||++...||.+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence 479999999999999999999999999999999988888653
No 89
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.17 E-value=5.8e-10 Score=105.37 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP 285 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~ 285 (328)
..+...|.+.+++.|++++.++.++++..+++|++++|.. +++ .+.|+.||++.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLAT 225 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIAT 225 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeC
Confidence 4688899888888999999999999999843788888864 343 47899988644
No 90
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.16 E-value=3e-09 Score=100.14 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEc-CEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~a-d~vV~~~~~~~~ 290 (328)
..++++|.+.+++.|++|+++++|++|..+ ++++++|.. +++ .++| +.||++++-+..
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 468899999999999999999999999988 788888765 344 4788 888887766543
No 91
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=2.3e-10 Score=107.79 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+...|.+.+++.|+++++++.|+++..++++++++|.. +++ .+.|+.||++.+
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 209 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATG 209 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 4588899888888999999999999999873478888864 343 578999887544
No 92
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.14 E-value=3.4e-11 Score=95.29 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=35.4
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
++||+|||||++||+||++|+++|++|+|+|++..+||..+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 589999999999999999999999999999999999997654
No 93
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=4.1e-10 Score=105.59 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-c---Cc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~---g~--~~~ad~vV~~~~ 286 (328)
..+.+.|.+.+++.|+++++++.++++..+ +|++++|.. + ++ .+.|+.||++.+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 458888888888889999999999999998 899999875 2 22 478999887554
No 94
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.14 E-value=3.1e-10 Score=107.22 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+..+|.+.+++.|++|+.++.++++..++++++++|.. +++ .+.|+.||++.+
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 247 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATG 247 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence 4588889888888899999999999998764678888864 343 478999886543
No 95
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=4e-10 Score=106.09 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+.+.|.+.+.+.|++++.++.++++..++++++++|.. +++ .+.|+.||++.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 208 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATG 208 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence 4588889888888999999999999999864578888864 333 478999886543
No 96
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.13 E-value=7.9e-10 Score=103.16 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
.++||+|||||+|||+||..++++|.+|+|+||....||.+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s 55 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGST 55 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCch
Confidence 36899999999999999999999999999999998877743
No 97
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.13 E-value=1.6e-09 Score=102.00 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+...|.+.+++.|+++++++.|++|..+ ++++++|.. +++ .+.|+.||++.+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 188 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATG 188 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCC
Confidence 357888888888889999999999999988 788888764 343 589999887654
No 98
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.13 E-value=1.3e-09 Score=99.40 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=48.4
Q ss_pred eecCCcCcHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCcEEEEEe--cCceEEcCEEEECCC
Q 020312 226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS--EGETAKCKKVVCDPS 286 (328)
Q Consensus 226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~~v~~--~g~~~~ad~vV~~~~ 286 (328)
++.++...+++.|.+.+++.|++|+++++|++|..++ ++++++|.. ++..+.|+.||++++
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 3445556799999999999999999999999999863 467887775 335799999887655
No 99
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.12 E-value=1.1e-09 Score=102.95 Aligned_cols=44 Identities=36% Similarity=0.676 Sum_probs=40.0
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 46 (328)
.++||+|||+|.+|++||+.++++|.+|+|||+.+.+||.+...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s 58 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS 58 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence 36899999999999999999999999999999999999976543
No 100
>PRK07190 hypothetical protein; Provisional
Probab=99.12 E-value=1.4e-09 Score=100.20 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=35.5
Q ss_pred CCC-cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
|+. .+||+|||||++||++|..|+++|.+|+|||+.+.+
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 554 489999999999999999999999999999998765
No 101
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.12 E-value=1.8e-09 Score=101.55 Aligned_cols=42 Identities=29% Similarity=0.501 Sum_probs=38.7
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
..++||||||+|++||+||+.++++|.+|+||||....||.+
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 357899999999999999999999999999999999888853
No 102
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=9.9e-10 Score=104.16 Aligned_cols=38 Identities=32% Similarity=0.353 Sum_probs=35.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
++||+|||||+|||+||..++++|.+|+|+|+...+|+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 58999999999999999999999999999999877764
No 103
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.11 E-value=4.2e-09 Score=97.81 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=37.8
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.++||||||+| +||+||+++++.|.+|+||||....||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 47899999999 999999999999999999999998888653
No 104
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=5.4e-10 Score=105.12 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+.+.|.+.+++.|+++++++.|+++..+ ++++.++.. +++ .+.|+.||++++
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATG 194 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATG 194 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCC
Confidence 468889998888899999999999999987 788887753 343 489999887554
No 105
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.11 E-value=1.5e-09 Score=100.19 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEEEEe-c-C--ceEEcCEEEECCCC
Q 020312 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-E-G--ETAKCKKVVCDPSY 287 (328)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~v~~-~-g--~~~~ad~vV~~~~~ 287 (328)
..+.+.|.+.+++ .|+++++++.|++|..+ +++++++.. + + ..+.|+.||++.+-
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 4688888888887 69999999999999987 788887766 2 2 36899998876543
No 106
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.10 E-value=3.5e-09 Score=99.00 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHH-HcCcEEEcCcceeEEEecCCCcEEEEEe--cCc---eEEcCEEEECCCC-Ccchhh
Q 020312 232 GELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE---TAKCKKVVCDPSY-LPNKVI 293 (328)
Q Consensus 232 ~~l~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~---~~~ad~vV~~~~~-~~~~~~ 293 (328)
.....++.+.+. ..|++|+.++.|++|..+ ++++++|+. +++ .+.++.||++++. .++++.
T Consensus 193 ~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 193 VSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred EcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 344555555554 457999999999999998 888999986 332 2578888877765 455543
No 107
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.10 E-value=1.2e-09 Score=94.34 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
|||+|||||++||++|+.|+++|.+|+|+|+++.++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999887654
No 108
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.10 E-value=9.5e-10 Score=99.26 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=36.2
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
|..+.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 677899999999999999999999999999999997654
No 109
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=7.3e-10 Score=104.35 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=37.9
Q ss_pred CCC-cccEEEECCChhHHHHHHhhhhCC---CeEEEeccCCCCCCcc
Q 020312 1 MDE-EYDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES 43 (328)
Q Consensus 1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G---~~V~vlE~~~~~GG~~ 43 (328)
|+. ++||+|||||+|||+||..++++| .+|+|+||....||.+
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 443 589999999999999999999998 8999999998877754
No 110
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.09 E-value=4.9e-09 Score=98.75 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=39.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
++||||||||++||+||+.++++|.+|+|+||....||.+..
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 689999999999999999999999999999999999987643
No 111
>PLN02661 Putative thiazole synthesis
Probab=99.09 E-value=2.5e-09 Score=92.32 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=36.1
Q ss_pred cccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCCCCc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGE 42 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~ 42 (328)
++||+|||||++|++||++|+++ |.+|+|+|++..+||.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 58999999999999999999976 8999999999888874
No 112
>PRK06185 hypothetical protein; Provisional
Probab=99.09 E-value=2.8e-09 Score=96.58 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=34.1
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
+.++||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3579999999999999999999999999999999753
No 113
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.09 E-value=2e-09 Score=96.79 Aligned_cols=55 Identities=16% Similarity=0.101 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~ 288 (328)
..+.+.|.+.+.+.| ++++++++|++|+.+ ++.+. ++. ++++++||.||.+.+..
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~-v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHVE-LTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCeeE-EEECCCCEEEeeEEEEeCCCC
Confidence 457788888888888 999999999999987 56543 555 77789999988765543
No 114
>PRK12839 hypothetical protein; Provisional
Probab=99.09 E-value=7.5e-09 Score=97.03 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.++||+|||+|.+|++||+.|+++|.+|+|||+...+||.+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 4699999999999999999999999999999999999997654
No 115
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=2.9e-09 Score=100.90 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
++||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 589999999999999999999999999999999876654
No 116
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=6.1e-10 Score=104.86 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCC---CcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~---~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+.+.|.+.+++.|+++++++.|++|..+++ ++++++.. +++ .+.|+.||++++
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 203 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATG 203 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCC
Confidence 46888898888889999999999999998722 78888864 343 478999887554
No 117
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=4.7e-09 Score=98.88 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
+++||+|||||+|||+||..++++|.+|+|+||....||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 46799999999999999999999999999999998876643
No 118
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.07 E-value=1.8e-09 Score=100.69 Aligned_cols=55 Identities=7% Similarity=0.119 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCcceeEEEecC-CCcEEEEEe--cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDE-EGKVVGVTS--EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-~~~v~~v~~--~g~--~~~ad~vV~~~~ 286 (328)
..+.++|.+.+++. |+++++++.|+++..++ ++++++|.. +++ .+.|+.||++++
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATG 194 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATG 194 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCC
Confidence 46888888877654 99999999999999873 378888875 444 378999886543
No 119
>PRK06184 hypothetical protein; Provisional
Probab=99.06 E-value=1.1e-09 Score=101.70 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=34.9
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
++++||+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 34799999999999999999999999999999998754
No 120
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.06 E-value=5.6e-09 Score=95.91 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~ 287 (328)
..+.+.|.+.+++.|++++.+ .++++..+ +++++++.++++.+.||.||++++-
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~g~~i~a~~VVLATGG 173 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLDGELLKFDATVIATGG 173 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEECCEEEEeCeEEECCCc
Confidence 468899999999999999876 89999877 7888888887778999998876554
No 121
>PRK09126 hypothetical protein; Provisional
Probab=99.05 E-value=2.9e-09 Score=95.95 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=35.3
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
|+ ++||+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 55 799999999999999999999999999999998764
No 122
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.05 E-value=2.3e-09 Score=96.99 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~ 289 (328)
..+.+.|.+.+++.|++++++++|++|+.+ ++.+. +++ +++++.||.||.+.+..+
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGVT-VTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEEE-EEECCCCEEEeCEEEEcCCCCh
Confidence 467888888888889999999999999987 55543 454 777899999998776643
No 123
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.05 E-value=2.3e-09 Score=97.03 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~ 289 (328)
.+.+.|.+.+++.|++++++++|++|+.+ ++.+. |+. ++++++||.||.+.+..+
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS-GDDWL-LTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 45566667777789999999999999987 55543 454 777899999997766543
No 124
>PRK07045 putative monooxygenase; Reviewed
Probab=99.04 E-value=2.8e-09 Score=95.91 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=35.4
Q ss_pred CC-CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 1 ~~-~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
|. .++||+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 44 5689999999999999999999999999999998754
No 125
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.04 E-value=3.2e-09 Score=98.45 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=36.3
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
.++||+|||+|+|||+||..+++ |.+|+|+||....||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 37899999999999999999987 99999999999877754
No 126
>PRK08275 putative oxidoreductase; Provisional
Probab=99.04 E-value=4.1e-09 Score=98.84 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+.+.|.+.+++.|+++++++.|++|..++++++.+|.. +++ .+.|+.||++++
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCG 197 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence 4578888888888999999999999999863567887763 343 478999886544
No 127
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.03 E-value=4.3e-09 Score=94.75 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
.++||+|||||++||++|+.|++.|.+|+|+|+++.+
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 4689999999999999999999999999999998764
No 128
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.03 E-value=3.7e-09 Score=99.87 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+.+.|.+.+++.| ++++.++.|++|..+ ++++++|.. +++ .+.|+.||++++
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATG 192 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCC
Confidence 457777877787776 999999999999987 778887742 343 589999887655
No 129
>PRK06834 hypothetical protein; Provisional
Probab=99.03 E-value=4.9e-09 Score=96.68 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~ 289 (328)
+-+.|.+.+++.|++++++++|++|+++ ++.+. ++. ++++++||+||.|.+..+
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v~-v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQD-DTGVD-VELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCC
Confidence 4555666777889999999999999988 55543 444 667899999997765543
No 130
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.02 E-value=2.9e-09 Score=98.77 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~ad~vV~~~~ 286 (328)
..+.++|.+.+++. |++++.+++|++|..+ +++++++.. +++ .+.|+.||++++
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATG 194 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATG 194 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCC
Confidence 46888898888775 8999999999999887 788888876 333 589999886543
No 131
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.01 E-value=6.6e-09 Score=93.36 Aligned_cols=55 Identities=22% Similarity=0.141 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~ 287 (328)
..+-+.|.+.+.+.+ ++++++++|+.++.+ ++.+..... +|++++||.||.+=+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECCCC
Confidence 356677777787776 899999999999998 666664444 7888999999966543
No 132
>PLN02815 L-aspartate oxidase
Probab=99.00 E-value=2.8e-09 Score=100.01 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=36.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
++||+|||+|++||+||+.+++.| +|+|+||....||.+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 589999999999999999999999 999999999888753
No 133
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.00 E-value=2.9e-09 Score=107.39 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
++||||||+|.+||+||..+++.|.+|+||||....||.+.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 58999999999999999999999999999999999999654
No 134
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.00 E-value=6.9e-09 Score=93.19 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCC
Q 020312 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (328)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~ 288 (328)
..+.+.|.+.+.+. |++++++++|++|+.+ ++.++ |.. ++++++||.||.+.+..
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVR-VTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEE-EEECCCCEEEeeEEEEecCCC
Confidence 45788888888874 9999999999999987 55543 444 67789999999776653
No 135
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.99 E-value=9.8e-09 Score=94.97 Aligned_cols=42 Identities=40% Similarity=0.529 Sum_probs=37.4
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCCCc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGE 42 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~ 42 (328)
|+.+|||+|||||+||+.||+.+++.|.+|+|+|++ +.+|+.
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 566899999999999999999999999999999997 466653
No 136
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.98 E-value=6.8e-09 Score=98.72 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+...|.+.+++.|++++.+++|++|..+ +++++++.. +++ .+.|+.||++++
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 457778888888899999999999999988 788888764 343 367999886554
No 137
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=2.1e-09 Score=100.62 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..+...|.+.+++.|+++++++.|+++..+++++++++.. +++ .+.|+.||++++
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATG 194 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATG 194 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCC
Confidence 4578888888888899999999999999873334888753 343 488999886544
No 138
>PRK08244 hypothetical protein; Provisional
Probab=98.97 E-value=1.3e-08 Score=94.54 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
++||+|||||++||++|..|+++|++|+|+||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 48999999999999999999999999999999754
No 139
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.94 E-value=2.5e-08 Score=89.85 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 57999999999999999999999999999999774
No 140
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.92 E-value=9.4e-08 Score=88.15 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
|||+|||+|++|+++|++|+++|++|+|+|++...||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988875
No 141
>PRK07588 hypothetical protein; Provisional
Probab=98.91 E-value=1.9e-08 Score=90.68 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
.||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 4899999999999999999999999999999653
No 142
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.91 E-value=7e-09 Score=97.41 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..|.++|.+.+.+. |++++.++.++++..+ ++++++|.. +++ .+.|+.||++.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 192 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATG 192 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCC
Confidence 45888888777664 7999999999999998 788888763 343 588999886543
No 143
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.91 E-value=1.4e-08 Score=95.92 Aligned_cols=35 Identities=31% Similarity=0.299 Sum_probs=32.3
Q ss_pred EEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
|+|||||+|||+||..++++|.+|+|+||.+.+|+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 68999999999999999999999999999986553
No 144
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.90 E-value=2.7e-08 Score=93.67 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=35.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~ 43 (328)
++||+|||||+|||+||..++++| .+|+|+||....||.+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 689999999999999999999874 7999999998877744
No 145
>PLN02697 lycopene epsilon cyclase
Probab=98.89 E-value=2.2e-08 Score=92.37 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
..+.+.|.+.+.+.|+++ ++++|++|..+ ++.+..+.+ ++++++|+.||.+.+..+.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 346677777788889998 78899999887 555544444 7788999999987776553
No 146
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.89 E-value=2.6e-08 Score=93.41 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=34.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
++||+|||||++||++|..|+++|++|+|+|+...+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 6899999999999999999999999999999987654
No 147
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.88 E-value=8.7e-08 Score=80.48 Aligned_cols=39 Identities=36% Similarity=0.587 Sum_probs=35.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC--CCCCc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGE 42 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~--~~GG~ 42 (328)
++||+|||+|++||.||.+|+.+|++|+|+|+.. .+||.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 6899999999999999999999999999999864 36664
No 148
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.87 E-value=6.8e-08 Score=90.00 Aligned_cols=36 Identities=36% Similarity=0.632 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
|..++|+||||+|.+|.+.|.+|+..|.+|+|||+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 456799999999999999999999999999999994
No 149
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.87 E-value=4.3e-08 Score=91.56 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=35.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
++||+|||+|++||+||+.+++. .+|+|+||....||.+
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 58999999999999999999986 8999999998877753
No 150
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.86 E-value=9.5e-08 Score=89.83 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=34.4
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
.++||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4689999999999999999999999999999998754
No 151
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.86 E-value=1.7e-07 Score=83.26 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC--ceEEcCEEEECCCCC-cchh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL-PNKV 292 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g--~~~~ad~vV~~~~~~-~~~~ 292 (328)
..+.++|.+.++++|++++.+++|+++..+ ++++++|.+ ++ ..++||+||++++.+ +..+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGL 326 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHH
Confidence 458899999999999999999999999988 788888886 44 489999988877766 6544
No 152
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.83 E-value=2.6e-09 Score=94.65 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCce--EEcCEEEECCCCCcchhhh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGET--AKCKKVVCDPSYLPNKVII 294 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~~--~~ad~vV~~~~~~~~~~~~ 294 (328)
..+.-+++-.+..+|..+.-+.+|.++..++++++.++++ +|++ ++|+.||.+.+++.+.+++
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~ 292 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRK 292 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHh
Confidence 3467777766788999999999999999987788888875 5665 6788899888888776654
No 153
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.82 E-value=8.4e-08 Score=86.14 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc--eEEcCEEEECCCC
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPSY 287 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~--~~~ad~vV~~~~~ 287 (328)
.+.+.|.+.+++.|++++++++|+++..+ +++++.+.+ +++ .++||.||++++.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 68888999999999999999999999987 677766555 443 5899998876554
No 154
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.81 E-value=4.3e-09 Score=95.99 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
....+|+|||||++||+||.+|.++|++|+|+|+++.+||...
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 3468999999999999999999999999999999999999753
No 155
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.80 E-value=7.6e-08 Score=86.96 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=32.3
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
-+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 47999999999999999999999999999997643
No 156
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.78 E-value=6.1e-09 Score=95.86 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=40.7
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 46 (328)
+.+|||+|||||++|++||.+|+++|++|+|+|+++.+||.+...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~ 47 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT 47 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 346999999999999999999999999999999998999987443
No 157
>PRK06116 glutathione reductase; Validated
Probab=98.78 E-value=5.6e-09 Score=95.77 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=39.6
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
|+.+|||+|||||++|++||..|+++|++|+|+|+. .+||.|.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 777899999999999999999999999999999995 7888764
No 158
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.77 E-value=9.1e-08 Score=90.03 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCC--CcEEEEEe----cCc--eEEcCEEEECCCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE--GKVVGVTS----EGE--TAKCKKVVCDPSY 287 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~--~~v~~v~~----~g~--~~~ad~vV~~~~~ 287 (328)
..+...+...+++.+++++.++.|+++..+++ |++++|.. +++ .+.|+.||++.+-
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG 189 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGG 189 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCc
Confidence 44555555556667789999999999998732 78888864 343 4789999876554
No 159
>PRK06370 mercuric reductase; Validated
Probab=98.76 E-value=8.4e-09 Score=94.93 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=38.5
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
|+.+|||+|||||++|++||..|+++|++|+|+|+. .+||.|.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 677899999999999999999999999999999996 5666553
No 160
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.75 E-value=1.7e-07 Score=82.41 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=38.7
Q ss_pred HHHHHHHHHHH-cCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312 234 LPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (328)
Q Consensus 234 l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~ 287 (328)
+-+.+.+.+++ .+++++ +.+|++|..+ ++++.+|.+ +|+.+.||.||.+.+.
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCCCCEEecCEEEEeccc
Confidence 33444455555 367775 7899999998 899999999 8889999998876655
No 161
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.74 E-value=8.8e-09 Score=94.71 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
++|||+|||||++|++||..++++|++|+|+|+++.+||.|-.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 4699999999999999999999999999999998889998733
No 162
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=1.2e-08 Score=93.98 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=41.5
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
|+.+|||+|||||.+|++||..|++.|++|+|+|+.+.+||.|..
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 677899999999999999999999999999999998889997643
No 163
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.72 E-value=1.3e-08 Score=93.89 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=40.3
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
|.+.|||+|||||.+|++||..|+++|++|+|+|+. .+||.|..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 677899999999999999999999999999999995 78997744
No 164
>PRK09897 hypothetical protein; Provisional
Probab=98.71 E-value=2.2e-07 Score=85.91 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=33.5
Q ss_pred cEEEECCChhHHHHHHhhhhCC--CeEEEeccCCCCC-Ccc
Q 020312 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG-GES 43 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~~~G-G~~ 43 (328)
+|+|||||.+|+++|.+|.+.+ .+|+|+|++..+| |..
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a 43 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP 43 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee
Confidence 8999999999999999998765 5899999998887 543
No 165
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.71 E-value=1.3e-08 Score=93.06 Aligned_cols=42 Identities=33% Similarity=0.511 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC-CCCccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY-YGGESS 44 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~-~GG~~~ 44 (328)
++|||+|||||++|++||..|++.|++|+|+|+++. +||.|-
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 479999999999999999999999999999999874 688753
No 166
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.70 E-value=1.7e-08 Score=93.02 Aligned_cols=45 Identities=31% Similarity=0.520 Sum_probs=39.6
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 46 (328)
|+++|||+|||||++|++||.+|+++|++|+|+|++ .+||.|...
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence 677899999999999999999999999999999985 677766443
No 167
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.70 E-value=1.6e-08 Score=91.83 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
+.++||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 45789999999999999999999999999999998754
No 168
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.70 E-value=1.5e-08 Score=92.67 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
..+.+.+.+.+++.|+++++++.|++|..+ ++.+ .++++++++.+|.||++++..|+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHAQLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCCeEEeCEEEEeecCCcC
Confidence 346677778889999999999999999876 5543 34555556999999988877664
No 169
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.69 E-value=1.8e-08 Score=90.70 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=34.9
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
++++||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 45689999999999999999999999999999998654
No 170
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.69 E-value=1.3e-08 Score=90.18 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe---cCc--eEEcCEEEECCCCCc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSYLP 289 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~---~g~--~~~ad~vV~~~~~~~ 289 (328)
.+-+.|.+.+++.|++++++++|+++..+ ++.+..+.. +++ +++||.||.+-+..+
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccc-ccccccccccccCCceeEEEEeeeecccCccc
Confidence 46667778888899999999999999988 666544443 232 689999887665543
No 171
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=1.6e-08 Score=90.91 Aligned_cols=41 Identities=29% Similarity=0.355 Sum_probs=38.6
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
+...+|+|||||+|||++|.+|.+.|++|+|+||.+.+||.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl 44 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL 44 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce
Confidence 44689999999999999999999999999999999999995
No 172
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.68 E-value=1.5e-07 Score=83.10 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=43.9
Q ss_pred cCcHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcEEEEEe------cCceEEcCEEEECCCC
Q 020312 231 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS------EGETAKCKKVVCDPSY 287 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~~v~~------~g~~~~ad~vV~~~~~ 287 (328)
++.+.+.|.+.+++. |++++++++|++|++..+|. +.|.+ +.++++|+.|++.++-
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG 242 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGG 242 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCch
Confidence 578999999998888 99999999999999984554 33332 3357999999876653
No 173
>PLN02785 Protein HOTHEAD
Probab=98.67 E-value=5.5e-07 Score=84.59 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
.||+||||||.+|+.+|..|++ +.+|+|||++..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 5999999999999999999999 699999999653
No 174
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.66 E-value=2.2e-08 Score=91.68 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC-ceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-ETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g-~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|+++++++.|++|..+ ++....++. ++ +.+.+|.||++++..|+
T Consensus 208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 208 MISETITEEYEKEGINVHKLSKPVKVEKT-VEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEe-CCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 46677777888899999999999999876 333233444 55 56999999988887665
No 175
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.66 E-value=2.3e-07 Score=84.66 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~ 287 (328)
..+-+-|.+.++++|++++.++ |+++..+++|.+++|++ +|++++||.||=|.++
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence 3466667788899999998874 88888876777888998 8888999999954443
No 176
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.66 E-value=3.9e-07 Score=90.18 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
++||+|||||.+||+||..++++|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999875
No 177
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.66 E-value=2.2e-08 Score=90.61 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
||..+||+|||||++||++|..|+++|++|+|+|+.
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 677899999999999999999999999999999996
No 178
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.65 E-value=2.8e-07 Score=75.82 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=36.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCC------CeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G------~~V~vlE~~~~~GG~~ 43 (328)
..+|+|||||+.|.++||+|++++ +.|+|+|.+...||.+
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaS 55 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGAS 55 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccc
Confidence 478999999999999999999998 8999999999888853
No 179
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.65 E-value=2.3e-08 Score=91.57 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
+|||+|||||++|++||..++++|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 69999999999999999999999999999999 578997753
No 180
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.64 E-value=2.9e-08 Score=90.22 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=41.2
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCe-EEEeccCCCCCCcccccc
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSSLN 47 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~~GG~~~s~~ 47 (328)
++.+||+|||||.+||++|++|.++|.. ++||||++.+||.-+..+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r 52 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR 52 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc
Confidence 4579999999999999999999999988 999999999999755443
No 181
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.64 E-value=7.2e-07 Score=69.31 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=27.8
Q ss_pred EEECCChhHHHHHHhhhhC-----CCeEEEeccCCC
Q 020312 8 IVLGTGLKECILSGLLSVD-----GLKVLHMDRNDY 38 (328)
Q Consensus 8 vIvG~G~aGl~aA~~L~~~-----G~~V~vlE~~~~ 38 (328)
+|||+|++|++++.+|.++ ..+|+|+|++..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 6999999999999999987 478999999655
No 182
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.64 E-value=2.7e-08 Score=90.39 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=33.9
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
||||||||++|++||+.+++.|.+|+|+|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999997654
No 183
>PRK08013 oxidoreductase; Provisional
Probab=98.64 E-value=3.1e-08 Score=89.46 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
+++||+|||||++|+++|..|+++|++|+|+|+++.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 369999999999999999999999999999999875
No 184
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.63 E-value=3.7e-07 Score=76.34 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=37.0
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.|||||+|++||+|+-.+...|-.|+++|+..-+||++.-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 6999999999999999999999889999999999997543
No 185
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.63 E-value=3.3e-08 Score=92.73 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=38.9
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
|.+.|||+|||||++||+||.+|+++|++|+|+|++ ..||.+.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 667799999999999999999999999999999995 6788654
No 186
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.62 E-value=3.4e-08 Score=90.97 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=38.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.|||+|||||++|++||.+|+++|++|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 48999999999999999999999999999999 889997654
No 187
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.62 E-value=3.8e-08 Score=90.62 Aligned_cols=41 Identities=32% Similarity=0.478 Sum_probs=37.8
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.+|||+|||||++|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 469999999999999999999999999999999 77888764
No 188
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.61 E-value=3.8e-08 Score=88.41 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=33.3
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
|. .+||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 44 5899999999999999999999999999999864
No 189
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.60 E-value=4.5e-08 Score=90.29 Aligned_cols=46 Identities=26% Similarity=0.443 Sum_probs=40.9
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEecc------CCCCCCccccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR------NDYYGGESSSL 46 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~------~~~~GG~~~s~ 46 (328)
|+.+||++|||||++|++||.+|++.|.+|+|+|+ ...+||.|...
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~ 52 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV 52 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence 67789999999999999999999999999999998 36788877543
No 190
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.60 E-value=1.9e-07 Score=77.76 Aligned_cols=46 Identities=28% Similarity=0.402 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCcccccch
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSLNL 48 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~ 48 (328)
..||.||||||+.||+.|.+|.-+ +.+|.|||+....+-..+..|.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNS 94 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNS 94 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeeccccc
Confidence 369999999999999999999877 8999999998887766655554
No 191
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=4.5e-08 Score=90.14 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.+|||+|||||++|++||..|+++|++|+|+|+.. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 57999999999999999999999999999999977 8997644
No 192
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.58 E-value=5e-08 Score=95.49 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=39.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
..||+|||||+|||+||++|+++|++|+|+|+++.+||....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 379999999999999999999999999999999999998643
No 193
>PRK07236 hypothetical protein; Provisional
Probab=98.58 E-value=5.3e-08 Score=87.55 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
..+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 358999999999999999999999999999999864
No 194
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.58 E-value=5.1e-08 Score=96.02 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..+|+|||||+|||+||++|+++|++|+|+|+.+.+||..+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 47999999999999999999999999999999999999754
No 195
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.57 E-value=5.3e-08 Score=87.59 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
|||+|||||++|++||+.|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999997
No 196
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.56 E-value=5.8e-08 Score=88.52 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5899999999999999999999999999999975
No 197
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.56 E-value=6.2e-08 Score=78.92 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=31.0
Q ss_pred EEECCChhHHHHHHhhhhCCCe-EEEeccCCCCCCccc
Q 020312 8 IVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESS 44 (328)
Q Consensus 8 vIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~~GG~~~ 44 (328)
+|||||++||++|++|.++|.+ |+|||+++.+||...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~ 38 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR 38 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE
Confidence 6999999999999999999999 999999999999754
No 198
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.8e-08 Score=83.87 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccc
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~ 47 (328)
++.+||+|||||++||+||.+++++|.+++|++....+||......
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 3579999999999999999999999999555555577777655543
No 199
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.55 E-value=8.2e-07 Score=82.31 Aligned_cols=38 Identities=32% Similarity=0.353 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
|||+|||||++|+.||+.+++.|.+|+|+|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 69999999999999999999999999999997544443
No 200
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.55 E-value=7.4e-08 Score=86.79 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
+||+|||||++|++||+.|+++|++|+|+|+....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 689999999999999999999999999999986544
No 201
>PRK14694 putative mercuric reductase; Provisional
Probab=98.55 E-value=7.6e-08 Score=88.67 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
..+.+.+.+.+++.|+++++++.|++|+.+ ++. +.++++++++.+|.||++++..|+
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAGTLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCCEEEeCEEEEccCCCCC
Confidence 356777888888999999999999999876 443 345556668999999988877655
No 202
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.54 E-value=7.8e-08 Score=83.32 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=35.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
|||+|||||++||+||..|++.|++|+|+|+++ +||...
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~ 39 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT 39 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence 699999999999999999999999999999987 677544
No 203
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.54 E-value=6.8e-08 Score=84.89 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=39.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~ 47 (328)
-+++|||||++|++||..|++.|++|.++|+++.+||+....+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 5799999999999999999999999999999999999976543
No 204
>PRK12831 putative oxidoreductase; Provisional
Probab=98.54 E-value=8.9e-08 Score=87.83 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..||+|||||++||+||++|+++|++|+|+|+.+.+||...
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 58999999999999999999999999999999999999753
No 205
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.52 E-value=9.3e-08 Score=88.57 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|+++++++.|++|... ++.+ .++. +++++.+|.||.+.+..|+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKI-KVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEcCEEEEeeCCCCC
Confidence 35677778888999999999999999876 4443 3444 6788999999988887665
No 206
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.52 E-value=8.3e-08 Score=86.32 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999874
No 207
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.52 E-value=8.6e-08 Score=86.50 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHhhhhC---CCeEEEeccC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVD---GLKVLHMDRN 36 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~---G~~V~vlE~~ 36 (328)
+.+||+|||||++|+++|+.|+++ |++|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 579999999999999999999998 9999999995
No 208
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.51 E-value=9.2e-08 Score=86.20 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+++||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 36899999999999999999999999999999975
No 209
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.51 E-value=1.1e-07 Score=85.93 Aligned_cols=46 Identities=30% Similarity=0.494 Sum_probs=42.1
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 46 (328)
|+.+||++|||+|.+|.+||..+++.|.+|+++|++...||.|-..
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 6778999999999999999999999999999999998899977544
No 210
>PRK06753 hypothetical protein; Provisional
Probab=98.51 E-value=9.8e-08 Score=85.47 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
+||+|||||++||++|..|+++|++|+|+|+++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 489999999999999999999999999999987653
No 211
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.50 E-value=9.2e-08 Score=82.56 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHhhhhC------CCeEEEeccCCCCCCcccccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLN 47 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~------G~~V~vlE~~~~~GG~~~s~~ 47 (328)
+.+||+|||||.+||+||.+|.|. ..+|+|+|+...+||.+-|..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 468999999999999999999864 478999999999999887654
No 212
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.49 E-value=1.2e-07 Score=87.30 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=35.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
|||+|||||++|++||..|+++|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 799999999999999999999999999999976 777653
No 213
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.49 E-value=1.3e-07 Score=85.24 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=34.3
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
||+|||||++|+++|+.|+++|.+|+|||+++..|+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999876653
No 214
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.48 E-value=9.8e-07 Score=79.23 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
..++.+|++.+++ |++++++++|++|+.+ ++. +.|++ +++.+.||+||++++.+..
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 6789999988888 9999999999999987 555 55666 5656999999988877544
No 215
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.47 E-value=4.4e-06 Score=73.40 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=51.0
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
...++..+.+.++++|++|+++++|.+|+.. ++.+.+|.+ +|+++.||+||++++....
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcchH
Confidence 3457888889999999999999999999998 777777777 7789999999999987544
No 216
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.47 E-value=1.6e-07 Score=91.72 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=39.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
..+|+|||||+|||+||++|+++|++|+|+|+.+.+||..+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 469999999999999999999999999999999999997643
No 217
>PRK13748 putative mercuric reductase; Provisional
Probab=98.47 E-value=1.5e-07 Score=88.89 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|+++++++.|++|..+ ++.+ .+.++++++.+|.||++++..|+
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHGELRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCCeEEeCEEEEccCCCcC
Confidence 46677778888999999999999999876 5543 35555557999999998887665
No 218
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.45 E-value=1.9e-07 Score=85.27 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHHhhhh--CCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~s 45 (328)
..+|+|||||+|||+||..|++ .|++|+|+|+.+.+||..+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 4689999999999999999987 79999999999999997764
No 219
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.45 E-value=1.9e-07 Score=87.73 Aligned_cols=42 Identities=29% Similarity=0.587 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
+++||+|||+|.+|++||..++++|.+|+||||...+||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 368999999999999999999999999999999998888653
No 220
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.45 E-value=7.7e-07 Score=76.23 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
.+||+|||||++|.+.|+-|++.|.+|.|+||.
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 589999999999999999999999999999995
No 221
>PTZ00058 glutathione reductase; Provisional
Probab=98.45 E-value=1.8e-07 Score=87.28 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=37.8
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.+|||+|||||.+|++||..+++.|.+|+|+|++ .+||.|-.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 3689999999999999999999999999999996 68887643
No 222
>PRK07538 hypothetical protein; Provisional
Probab=98.45 E-value=1.7e-07 Score=85.05 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999998754
No 223
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.45 E-value=2.4e-06 Score=75.31 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcchh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~~~ 292 (328)
..++..+++.++++|++++.+++|++|..+ ++.+++|.++++++.||.||+|++.+..++
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSGDVQADQVVLAAGAWAGEL 196 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCCEEECCEEEEcCChhhhhc
Confidence 679999999999999999999999999987 777888888666899999998888754443
No 224
>PRK06126 hypothetical protein; Provisional
Probab=98.45 E-value=2e-07 Score=87.75 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 58999999999999999999999999999999764
No 225
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.44 E-value=1.7e-07 Score=86.87 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.+|+|||||++||++|..|.+.|++|+++|+++.+||.-+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 4799999999999999999999999999999999999654
No 226
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.44 E-value=1.7e-07 Score=83.82 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 699999999999999999999999999999864
No 227
>PLN02985 squalene monooxygenase
Probab=98.44 E-value=2.4e-07 Score=85.92 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
.++||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 358999999999999999999999999999999753
No 228
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.44 E-value=1.9e-07 Score=85.33 Aligned_cols=33 Identities=36% Similarity=0.561 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHhhhh----CCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSV----DGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~----~G~~V~vlE~~~ 37 (328)
|||+|||||++|+++|+.|++ +|++|+|+|+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 699999999999999999999 899999999954
No 229
>PRK14727 putative mercuric reductase; Provisional
Probab=98.43 E-value=1.9e-07 Score=86.28 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.++|++|||||.+|++||..|+++|.+|+|+|+++.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 3599999999999999999999999999999999899998754
No 230
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.43 E-value=6.9e-06 Score=74.14 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
+.+.+.+.+++.|++++++++|++|..+ +. +.+++ +++++.||.||++++..|+
T Consensus 188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~-~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVVDG--EK-VELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEEcC--CE-EEEEECCCCEEECCEEEECCCCChh
Confidence 4455667778899999999999999753 33 33555 7888999999998887765
No 231
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.42 E-value=2.8e-07 Score=84.39 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
.+||+|||||++||+||+.|+++|++|+|+|+.+.+||..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence 5799999999999999999999999999999999999864
No 232
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.42 E-value=2.9e-07 Score=79.83 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
+-+|||||||++||++|..|+++|++|+|+|++..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 45899999999999999999999999999999854
No 233
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.41 E-value=2.4e-07 Score=92.09 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=38.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..||+|||||++||+||++|+++|++|+|+|+.+.+||..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 47999999999999999999999999999999999999654
No 234
>PLN02507 glutathione reductase
Probab=98.41 E-value=2.8e-07 Score=85.39 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|+++++++.|++|+.+ ++.+. ++. +++++.+|.|+++++..|+
T Consensus 245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~~-v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 245 EMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGIK-VITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeEE-EEECCCcEEEcCEEEEeecCCCC
Confidence 45666677788899999999999999876 44433 444 6778999999988877655
No 235
>PRK05868 hypothetical protein; Validated
Probab=98.40 E-value=2.9e-07 Score=82.24 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 8999999999999999999999999999998654
No 236
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.40 E-value=8.8e-06 Score=74.66 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecCceEEcCEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g~~~~ad~vV~~~~~~~~ 290 (328)
..+.+.+.+.+++.|++++++++|++|.. ++++..+.++++++.||.||++++..|+
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence 34667777888899999999999999964 3455666677778999999998887664
No 237
>PLN02463 lycopene beta cyclase
Probab=98.40 E-value=2.8e-07 Score=83.70 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
.+||+|||||++|+++|+.|+++|++|+|+|++..
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 58999999999999999999999999999999754
No 238
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.40 E-value=3.1e-07 Score=87.98 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=38.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999653
No 239
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.39 E-value=3e-07 Score=87.40 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHHhhhh-CCCeEEEeccCCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY 38 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~-~G~~V~vlE~~~~ 38 (328)
|++++||+|||||++||++|..|++ .|.+|+|+|+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 5668999999999999999999999 5999999999864
No 240
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.39 E-value=3.1e-07 Score=81.77 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=34.5
Q ss_pred cEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCc
Q 020312 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE 42 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~ 42 (328)
||+|||||++||++|+.|+++ |++|+|+|+++..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999887763
No 241
>PTZ00367 squalene epoxidase; Provisional
Probab=98.38 E-value=3.1e-07 Score=85.72 Aligned_cols=35 Identities=37% Similarity=0.597 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.++||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35899999999999999999999999999999975
No 242
>PRK10262 thioredoxin reductase; Provisional
Probab=98.38 E-value=3.3e-07 Score=80.31 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=36.6
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
..+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 3589999999999999999999999999999964 67776543
No 243
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.38 E-value=3.5e-07 Score=84.31 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
..+.+.+.+.+++.|+++++++.|++|..+ ++....+++ +++++.+|.||++++..|+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 456778888899999999999999999876 344344454 6778999999988877655
No 244
>PRK11445 putative oxidoreductase; Provisional
Probab=98.37 E-value=3.2e-07 Score=81.33 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
+||+|||||++|+++|..|+++ ++|+|+|+.+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 7999999999999999999999 999999998754
No 245
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.37 E-value=3.6e-07 Score=86.09 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+..+|+|||||++||++|..|+++|++|+|+|+..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999975
No 246
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.35 E-value=4.8e-07 Score=83.36 Aligned_cols=40 Identities=30% Similarity=0.357 Sum_probs=37.7
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
..+|+|||||++||+||..|+++|++|+|+|+.+.+||..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l 182 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL 182 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee
Confidence 4799999999999999999999999999999999999864
No 247
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.35 E-value=4.7e-07 Score=88.20 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=38.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..||+|||||++||+||++|+++|++|+|+|+.+.+||...
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 47999999999999999999999999999999999998753
No 248
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.35 E-value=4.3e-07 Score=82.48 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYG 40 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~G 40 (328)
.+|+|||||++||++|+.|+++| .+|+|+|+++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 37999999999999999999998 5999999987654
No 249
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.35 E-value=4.3e-07 Score=90.65 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=39.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
.+||+|||||++||+||.+|+++|++|+|+|+++.+||....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 589999999999999999999999999999999999997654
No 250
>PLN02546 glutathione reductase
Probab=98.34 E-value=5.1e-07 Score=84.34 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=37.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEecc---------CCCCCCccccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSSL 46 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~---------~~~~GG~~~s~ 46 (328)
+|||+|||||.+|+.||..|+++|++|+|+|+ ...+||.|-..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence 58999999999999999999999999999996 25678876443
No 251
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.33 E-value=5.6e-07 Score=79.93 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
.||+|||||++|+.||+.|+++|++|+|+|+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 49999999999999999999999999999987654
No 252
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.33 E-value=5.8e-07 Score=81.15 Aligned_cols=43 Identities=16% Similarity=0.072 Sum_probs=37.9
Q ss_pred cccEEEECCChhHHHHHHhhh-hCCCeEEEeccCCCCCCccccc
Q 020312 4 EYDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDYYGGESSSL 46 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~-~~G~~V~vlE~~~~~GG~~~s~ 46 (328)
...|+|||||+|||.||.+|+ +.|++|+|+|+.+.+||..+..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 468999999999999999764 6799999999999999987643
No 253
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.33 E-value=1.9e-05 Score=67.75 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCCCCCcccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~s 45 (328)
..+-|||+|++||++|..|.+. |.++-|+|.-...||...-
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 4567999999999999999986 5799999999999996533
No 254
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.33 E-value=1.3e-05 Score=71.28 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=46.3
Q ss_pred eEEeecCCcC-cHHHHHHHHHHH-cCcEEEcCcceeEEEecCCC-cEEEEEe--c-C--ceEEcCEEEECCC
Q 020312 223 PYIYPLYGLG-ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEG-KVVGVTS--E-G--ETAKCKKVVCDPS 286 (328)
Q Consensus 223 ~~~~~~gG~~-~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~~-~v~~v~~--~-g--~~~~ad~vV~~~~ 286 (328)
..++..+..+ .+..+|.+.+++ .+++++.++.+.+|..+ ++ .+.|+.+ . + ..+.|+.||++.+
T Consensus 123 RIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~~~~~~~~~a~~vVLATG 193 (518)
T COG0029 123 RILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRNGELGTFRAKAVVLATG 193 (518)
T ss_pred eEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEecCCCeEEEEecCeEEEecC
Confidence 3455555544 488888887776 58999999999999998 66 5558876 2 2 4688999886543
No 255
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.32 E-value=6e-07 Score=86.92 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=35.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
..+|+|||||+|||+||++|++.|++|+|+|+.+..|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 479999999999999999999999999999998776654
No 256
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.31 E-value=7.3e-07 Score=81.95 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=37.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
..+|+|||||++||++|+.|+++|++|+|+|+.+.+||..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL 179 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence 4799999999999999999999999999999999998864
No 257
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.30 E-value=6.6e-07 Score=79.95 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
.||+|||||++|+.||+.|+++|++|+|+|+++..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 4899999999999999999999999999998776544
No 258
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.30 E-value=6.8e-07 Score=83.39 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=35.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.+||+|||||++||+||.+|++.|++|+|+|. .+||.+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 58999999999999999999999999999986 3888764
No 259
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.29 E-value=7.9e-07 Score=81.73 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=38.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..+|+|||||++||+||++|++.|++|+|+|+.+.+||..+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999653
No 260
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.28 E-value=2.8e-05 Score=71.57 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccCCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYY 39 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~~~~ 39 (328)
..||.||||||-||++.|..|++. -++|+|||++..+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999987 4899999996544
No 261
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.28 E-value=8.4e-07 Score=84.73 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..+|+|||||++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 57999999999999999999999999999999999998753
No 262
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.28 E-value=7.8e-07 Score=79.52 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=32.1
Q ss_pred cEEEECCChhHHHHHHhh--hhCCCeEEEeccCCCC
Q 020312 6 DVIVLGTGLKECILSGLL--SVDGLKVLHMDRNDYY 39 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L--~~~G~~V~vlE~~~~~ 39 (328)
||||||||+|||++|++| ++.|.+|+|||++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8889999999998766
No 263
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.27 E-value=8.7e-07 Score=84.71 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=38.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..+|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 36999999999999999999999999999999999999653
No 264
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.27 E-value=9.5e-07 Score=82.34 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=35.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.+||+|||||++|++||.+|++.|++|+|+|. ++||.+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 48999999999999999999999999999975 6888764
No 265
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.26 E-value=9.2e-07 Score=83.85 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~s 45 (328)
+|||+|||+|.+|..||..+++.|.+|+|+|+. +.+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 689999999999999999999999999999985 468887643
No 266
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.24 E-value=1.1e-06 Score=81.75 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=39.2
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
..++||+|||||.|||.||..++++|.+|+|+||....+|.+..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 45799999999999999999999999999999999888765433
No 267
>PRK06996 hypothetical protein; Provisional
Probab=98.23 E-value=1.3e-06 Score=78.83 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=32.3
Q ss_pred CcccEEEECCChhHHHHHHhhhhCC----CeEEEeccCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRNDY 38 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G----~~V~vlE~~~~ 38 (328)
+++||+|||||++|+++|+.|+++| .+|+|+|+.+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 4689999999999999999999987 47999999764
No 268
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.21 E-value=1.5e-06 Score=70.57 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
||+|||||++|++||.+|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987553
No 269
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.18 E-value=1.4e-06 Score=78.87 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=39.2
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 46 (328)
.+|+|||||++||+||+.|+++|++|+|+|+.+.+||.....
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG 165 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence 689999999999999999999999999999999999986543
No 270
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.18 E-value=1.8e-06 Score=79.75 Aligned_cols=56 Identities=18% Similarity=0.036 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cC---ceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g---~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|+++++++.+++|... ++.+. ++. ++ +++.+|.||++.+..|+
T Consensus 221 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 221 DCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKVK-VTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEE-EEEecCCcceEEEeCEEEEEecCCcC
Confidence 45667777888999999999999999876 44432 333 33 47999999988777654
No 271
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.17 E-value=2.1e-06 Score=79.37 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=37.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.+|+|||||++|++||.+|+++|++|+|+|+.+++||...
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 6999999999999999999999999999999999998653
No 272
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.15 E-value=3.9e-06 Score=57.16 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=33.4
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
+|+|||||..|+-+|..|++.|.+|+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999999887
No 273
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.13 E-value=3.3e-06 Score=74.98 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=38.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..+|+|||||.+|+++|..|++.|++|+|+|+.+.+||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 47999999999999999999999999999999999998653
No 274
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.12 E-value=2.7e-06 Score=71.58 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc--eEEcCEEE-ECCCCCc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVV-CDPSYLP 289 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~--~~~ad~vV-~~~~~~~ 289 (328)
.+-+.|.+..++.|+.+..+-+|.+.... +++|+.|-+ +.. .++||.+| ++.++++
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASGSFFS 318 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeecccccc
Confidence 46788888899999999999999999998 999998887 554 37888865 5677754
No 275
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.10 E-value=2.6e-06 Score=81.92 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=38.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
..|+|||+|++||.||-.|-+.||-|+|+||++++||...
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 6899999999999999999999999999999999999754
No 276
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.09 E-value=0.00015 Score=71.33 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcch
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK 291 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~ 291 (328)
..+.+.+.++++|+++++++.|++|..++++....+.. +++++.+|.||++++..|+.
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 44566677889999999999999997642244455555 88899999999999887763
No 277
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.08 E-value=4.2e-06 Score=78.99 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=37.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
..+|+|||+|++||++|+.|++.|++|+|+|+.+.+||..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l 176 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM 176 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee
Confidence 3689999999999999999999999999999999999864
No 278
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.06 E-value=3.7e-06 Score=81.97 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~ 38 (328)
++|+|||||++||+||+.|+++ |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999875
No 279
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=4.7e-06 Score=76.65 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEecC--ceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~~g--~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|+++++++.|++|..+ ++. +.++.++ +++.+|.||++++..|+
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEECCceEEEEeCEEEEecCCccC
Confidence 46677778888899999999999999865 443 3344444 36999999988777654
No 280
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.05 E-value=1.7e-06 Score=68.12 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=37.0
Q ss_pred cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 45 (328)
+.||+|||+|-+||+|||+.+++ ..+|.|+|++-.+||.++-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 46999999999999999999954 5899999999999986543
No 281
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.05 E-value=5.1e-06 Score=76.55 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|++++++++|++|+.+ ++.+. +.. +++++.+|.||++++..|+
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECCCcEEEecEEEEeecCCcC
Confidence 35666777788899999999999999876 55543 444 7788999999988777655
No 282
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.02 E-value=7.8e-05 Score=69.72 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cC--ceEEcCEEEECCCCCcchhh
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNKVI 293 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g--~~~~ad~vV~~~~~~~~~~~ 293 (328)
..++.++++.++++|++++++++|++|+.+ ++++++|++ ++ ..+.|+.||.+++.+..++.
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~ 194 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIA 194 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHH
Confidence 568889999999999999999999999987 788777664 24 26899999999988776654
No 283
>PRK13984 putative oxidoreductase; Provisional
Probab=98.00 E-value=7.1e-06 Score=78.17 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=37.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
..+|+|||+|.+|+++|..|+++|++|+|+|+.+.+||..
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~ 322 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVM 322 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceE
Confidence 4789999999999999999999999999999999999864
No 284
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.98 E-value=7.1e-06 Score=70.46 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=40.4
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 46 (328)
.++|++|||+|++|-.||...+|.|.+..++|++..+||.|-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV 81 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence 36999999999999999999999999999999999999977443
No 285
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=8.3e-05 Score=66.36 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHhhhhCC---CeEEEeccCCCCCCcc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES 43 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G---~~V~vlE~~~~~GG~~ 43 (328)
++|+|||||.+|+.+|.+|.+.- ..|.|+|.....|+.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 58999999999999999999752 2299999998887643
No 286
>PRK07846 mycothione reductase; Reviewed
Probab=97.86 E-value=1.6e-05 Score=72.88 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
+.+.+.+ +.+.|++++++++|++|+.+ ++.+ .+++ +++++.+|.||++.+..|+
T Consensus 209 ~~~~l~~-l~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 209 ISERFTE-LASKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HHHHHHH-HHhcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccC
Confidence 4444443 33568999999999999876 5443 3444 6778999999988777554
No 287
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.86 E-value=1.3e-05 Score=67.90 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHhhhhC----CCeEEEeccCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDY 38 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~~~ 38 (328)
.++||+|||||.+|+|+|+-|+++ |.+|+|+|+++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 468999999999999999999864 799999999874
No 288
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.83 E-value=1.9e-05 Score=72.53 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
+.+.+.+. .+.|+++++++.|++|..+ ++.+ .++. +++++.+|.|+++++..|+
T Consensus 212 ~~~~l~~~-~~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 212 ISDRFTEI-AKKKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHH-HhcCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccCcC
Confidence 44444443 3468999999999999876 5543 3444 6778999999988887665
No 289
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.62 E-value=0.00072 Score=62.42 Aligned_cols=47 Identities=23% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 242 SAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 242 ~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
+++.|++++++++|++|..+ ++.+. +++ +++++++|.||++.+..|+
T Consensus 226 l~~~gI~v~~~~~v~~i~~~-~~~~~-v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 226 LRDSGVTIRHNEEVEKVEGG-DDGVI-VHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHcCCEEEECCEEEEEEEe-CCeEE-EEECCCCEEEeCEEEEeecCCcc
Confidence 45678999999999999876 44433 444 6778999999988877654
No 290
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.58 E-value=7.3e-05 Score=68.42 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|+++++++.|++|.. .. ++. +++.+.+|.||++++..|+
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~~---v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING---NE---VTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC---CE---EEECCCCEEEeCEEEECcCCCcC
Confidence 4667777888899999999999999952 22 333 6778999999988887654
No 291
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.56 E-value=9.8e-05 Score=63.58 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=38.0
Q ss_pred cccEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCccccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSL 46 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~ 46 (328)
...|+|||+|+||+-+|++|.++ +.+|+|+|+.+.+.|..+..
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 35899999999999999999884 58999999999999987653
No 292
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=7.9e-05 Score=67.29 Aligned_cols=40 Identities=38% Similarity=0.449 Sum_probs=34.9
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYG 40 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~G 40 (328)
|++.|||+|||||.||+-||+..++.|.+++++=-+ +.+|
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig 41 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG 41 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee
Confidence 567899999999999999999999999999998775 3344
No 293
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.48 E-value=0.00016 Score=63.52 Aligned_cols=35 Identities=37% Similarity=0.535 Sum_probs=27.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~ 38 (328)
.+|+|+||.|+++|+.|..|.+.+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 589999999999999999999887 99999998653
No 294
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.45 E-value=0.00015 Score=66.03 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcch
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK 291 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~~ 291 (328)
.+.+.+.+.++++|++++++++|++|..+ . |++ +|+++.||.||.+++..|+.
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~~---~---v~~~~g~~i~~d~vi~~~G~~~~~ 282 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLDK---E---VVLKDGEVIPTGLVVWSTGVGPGP 282 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeCC---E---EEECCCCEEEccEEEEccCCCCcc
Confidence 46677778889999999999999999633 2 334 78899999999888766553
No 295
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.41 E-value=0.0014 Score=62.07 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..|..+|.+.+++.|++++.++.++++..+++|+|+||.. +++ .+.|+.||++.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 5688999988888899999999999999864789999875 343 478999886543
No 296
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.32 E-value=0.00022 Score=64.59 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=38.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCccc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~ 44 (328)
.+++|||+|..||-+|..|+++|++|+++|+.+++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 5899999999999999999999999999999999999864
No 297
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00027 Score=60.04 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=31.3
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~ 35 (328)
.+||.+|||||-+||+||-+.+..|.+|.+||-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 369999999999999999999999999999997
No 298
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.26 E-value=0.00032 Score=59.83 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
+.||..|||||-.|+.+|...++.|.+|.|+|..-.+||.|-.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 3699999999999999999999999999999998899997743
No 299
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00032 Score=59.39 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=33.7
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
+..|-|||||++|.-|||.++++|..|.++|-++.-+-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~T 40 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGT 40 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCC
Confidence 45788999999999999999999999999999865443
No 300
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.18 E-value=0.00047 Score=53.57 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|+|+|||..|.++|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998854
No 301
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.12 E-value=0.00058 Score=61.25 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
+...+.+.+++.|++++++++|++|..+ ++. ..+.. +++++.||.||++++..|+
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCcc
Confidence 5566677788899999999999999876 444 34555 7889999999999888765
No 302
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.09 E-value=0.0006 Score=60.86 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|+++++++.|++|. ++ .+.+ +++++.+|.||++++..|+
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCCCCEEecCEEEEccCCChh
Confidence 355666777889999999999999985 23 2444 7889999999988887665
No 303
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.00068 Score=60.26 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccC-CCCCCcccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSS 45 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~s 45 (328)
..|||||||||.||.-||...++-|.+.++|-.+ +.+|-..+.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCN 70 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCN 70 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccC
Confidence 3689999999999999999999999998888876 455544433
No 304
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.93 E-value=0.0011 Score=58.89 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCc-eEEcCEEEECCCCCcch
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLPNK 291 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~-~~~ad~vV~~~~~~~~~ 291 (328)
.++.+...+.++++|++|+++++|++|..+ . |++ +++ .+.|+.+|=+++..+++
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~---~---v~~~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD---G---VTLKDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCC---c---EEEccCCeeEecCEEEEcCCCcCCh
Confidence 456666777889999999999999999754 2 334 555 59999999776665443
No 305
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.91 E-value=0.001 Score=58.22 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHhhhhC----CCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~----G~~V~vlE~~ 36 (328)
.+||+|||||+.|++.|..|... .++|+++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 69999999999999999999854 4899999997
No 306
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.84 E-value=0.0013 Score=52.52 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=26.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
++|.|||.|..||..|..|+++|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 479999999999999999999999999999854
No 307
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.81 E-value=0.0017 Score=51.69 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||+|..|...|..++.+|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999854
No 308
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.78 E-value=0.0015 Score=59.03 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=35.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
-+|+|||||..|+-+|..|++.|.+|+|+|+++++.++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence 47999999999999999999999999999999887654
No 309
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.75 E-value=0.0016 Score=60.17 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
+|+|||.|.+|+++|..|.++|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 310
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.72 E-value=0.0083 Score=53.16 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=66.1
Q ss_pred CCCCHHHHHHhcCCChhHH-HHHhhhhhcccCCCCCCCchHHHHHHHHHHHHhhhcccCCCeEEeecCCcCcHHHHHHHH
Q 020312 163 TRVTTRELIAKYGLDDNTI-DFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARL 241 (328)
Q Consensus 163 ~~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~ 241 (328)
...+..+++++.|+++.+. +++.......... ..... .+... ..........+.++||..++++.|++
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ----~~~i~---a~~G~---vSla~a~~gl~sV~GGN~qI~~~ll~- 136 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQ----NVNIH---AFAGL---VSLAGATGGLWSVEGGNWQIFEGLLE- 136 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccc----ccchh---hhhhh---eeeeeccCCceEecCCHHHHHHHHHH-
Confidence 4567888999999988774 5555544322222 11111 11221 11111234568889999999999965
Q ss_pred HHHcCcEEEcCcceeEE-EecCCCc-EEEEEe---cC-ceEEcCEEEECCCC
Q 020312 242 SAVYGGTYMLNKPECKV-EFDEEGK-VVGVTS---EG-ETAKCKKVVCDPSY 287 (328)
Q Consensus 242 ~~~~G~~i~~~~~V~~I-~~~~~~~-v~~v~~---~g-~~~~ad~vV~~~~~ 287 (328)
..|+++ +|+.|++| ...+++. ...|.. ++ ..-.+|.||+++++
T Consensus 137 --~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl 185 (368)
T PF07156_consen 137 --ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL 185 (368)
T ss_pred --HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence 467899 99999999 3332333 223332 22 23457999887665
No 311
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.68 E-value=0.0021 Score=59.68 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
.+|+|||+|.+|+++|..|+++|.+|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4799999999999999999999999999998764
No 312
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.67 E-value=0.0025 Score=49.09 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=27.9
Q ss_pred EEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312 7 VIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (328)
Q Consensus 7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~ 35 (328)
|+|+|+|..|+..|++|+++|++|+++-+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence 68999999999999999999999999987
No 313
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0017 Score=52.07 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=39.7
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC---C-CCCCcccccchHHHHhhh
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN---D-YYGGESSSLNLIQLWKRF 55 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~---~-~~GG~~~s~~~~~~~~~~ 55 (328)
..+|+|||+|+++-+||.+++++-.+-+|+|.. + -+||...+.+.-+-+|||
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGF 63 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGF 63 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCC
Confidence 458999999999999999999999999999974 2 357766554432334444
No 314
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.60 E-value=0.0027 Score=58.16 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
-+|+|||||.+|+.+|..|++.|.+|+|+|+++++..+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 47999999999999999999999999999998877544
No 315
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.59 E-value=0.003 Score=55.12 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=32.9
Q ss_pred CCC-cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 1 ~~~-~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
|+. .++|+|||+|..|.+.|+.|+++|++|+++.++.
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 443 5799999999999999999999999999998854
No 316
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0018 Score=54.12 Aligned_cols=35 Identities=14% Similarity=0.011 Sum_probs=28.7
Q ss_pred CcccEEEECCChhHHHHHHhhhhCC-------CeEEEeccCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRND 37 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G-------~~V~vlE~~~ 37 (328)
+..+|+|||+|+.||++|+.+.+.+ .+|+|++-+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 3579999999999999998888754 6788887543
No 317
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0013 Score=56.27 Aligned_cols=39 Identities=23% Similarity=0.477 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~ 43 (328)
..|||+|||||++|.+||.+.+++|.+.-|+ ..+.||..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv 248 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV 248 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence 3599999999999999999999999887665 24677754
No 318
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.55 E-value=0.0033 Score=54.26 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
|+.-.+|.|||+|..|...|..|+++|++|++++++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5666789999999999999999999999999999864
No 319
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.54 E-value=0.0029 Score=54.32 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCCc-ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 1 MDEE-YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 1 ~~~~-~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
|+.. .+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4444 3799999999999999999999999999998754
No 320
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.52 E-value=0.0028 Score=58.66 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 5899999999999999999999999999999887543
No 321
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.50 E-value=0.0034 Score=56.37 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
.+|+|||||.+|+-+|..|++.|.+|+++|+.+++..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~ 178 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA 178 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc
Confidence 5799999999999999999999999999999887653
No 322
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.50 E-value=0.0015 Score=53.67 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHhhhhC--CCeEEEeccCCCCCCc
Q 020312 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE 42 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~ 42 (328)
+.+||||||+|.+||-.|++. ..+|+++-+++.+---
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv 39 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV 39 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH
Confidence 468999999999999999975 5789999988776443
No 323
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.39 E-value=0.0035 Score=54.56 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 79999999999999999999999999999875
No 324
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.38 E-value=0.0033 Score=61.79 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
+.+.+.+.++++|+++++++.|++|..+ +.+..|+. +|+++.+|.||.+++..|+
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 3455566788899999999999999754 45566666 7889999999999988765
No 325
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.38 E-value=0.004 Score=57.48 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
.+++|||||.+|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 5899999999999999999999999999999887643
No 326
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.36 E-value=0.0041 Score=57.48 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||+|.+|+-+|..|++.|.+|+|+|+++++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP 203 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence 5899999999999999999999999999999877654
No 327
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.0043 Score=51.19 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
++++|||+|-.|.+.|..|++.|++|+++|+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999865
No 328
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.30 E-value=0.0057 Score=53.74 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=33.8
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
|.+.++|.|||+|.-|...|..|+++|++|++++++.
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5667899999999999999999999999999999853
No 329
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.29 E-value=0.0048 Score=57.07 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||..|+-.|..|++.|.+|+|+|+.+++..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~ 211 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP 211 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 4799999999999999999999999999999887654
No 330
>PRK07846 mycothione reductase; Reviewed
Probab=96.27 E-value=0.0051 Score=56.55 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
-+++|||||..|+-+|..|++.|.+|+|+|+++++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 589999999999999999999999999999988764
No 331
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.26 E-value=0.0051 Score=56.59 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||.+|+-.|..|++.|.+|+|+|+++++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999887653
No 332
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.26 E-value=0.0053 Score=56.63 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||.+|+-+|..|++.|.+|+|+|+++++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999887643
No 333
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.25 E-value=0.049 Score=47.99 Aligned_cols=37 Identities=35% Similarity=0.482 Sum_probs=32.8
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~ 37 (328)
|+..+|+|.||-|++-|+.|..|.+++ .+++.|||..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 556799999999999999999999876 8899999954
No 334
>PRK06370 mercuric reductase; Validated
Probab=96.24 E-value=0.0059 Score=56.44 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
-+|+|||||.+|+-+|..|++.|.+|+|+|+++++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 57999999999999999999999999999998877553
No 335
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.22 E-value=0.0058 Score=56.49 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||..|+-.|..|++.|.+|+|+|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 5799999999999999999999999999999887644
No 336
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.005 Score=53.88 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
++|.|+|+|-.||++|..|++.||+|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999753
No 337
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.17 E-value=0.0063 Score=52.84 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
.++|+|||+|..|...|++|++.|.+|+++.++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999986
No 338
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.16 E-value=0.0062 Score=56.27 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||.+|+-+|..|++.|.+|+++|+++++..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence 4799999999999999999999999999999887643
No 339
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.13 E-value=0.0061 Score=55.87 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||..|+-+|..|++.|.+|+|+|+++++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 4799999999999999999999999999999887654
No 340
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.12 E-value=0.0066 Score=55.48 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
-+|+|||||.+|+-+|..|++.|.+|+++++++.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 47999999999999999999999999999998876
No 341
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.12 E-value=0.0074 Score=55.03 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
-.++|||||..|+=.|..+++.|.+|+|+|+++++--.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~ 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence 46999999999999999999999999999999886553
No 342
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.10 E-value=0.0077 Score=52.36 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..|+|||+|..|...|..++.+|++|+++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 343
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.10 E-value=0.0069 Score=56.02 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||..|+-+|..|++.|.+|+|+|+++++..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 4799999999999999999999999999999876543
No 344
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.09 E-value=0.0076 Score=55.66 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||||.+|+-+|..|++.|.+|+++|+++++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 5799999999999999999999999999999887654
No 345
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.07 E-value=0.0077 Score=51.84 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|+|||+|..|.+.|..|+++|++|++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 346
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.07 E-value=0.0084 Score=55.21 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..+|+|+|+|.+|+.+|..|+++|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5789999999999999999999999999999864
No 347
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.05 E-value=0.0092 Score=46.87 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
+.+|+|+|+|.+|..||..|...|.+|+++|.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 478999999999999999999999999999974
No 348
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.04 E-value=0.022 Score=50.68 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=45.3
Q ss_pred EEeecCC-cCcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCceEEcCEEEECCC
Q 020312 224 YIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPS 286 (328)
Q Consensus 224 ~~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~~~~ad~vV~~~~ 286 (328)
.+||... .+++.++|...++++|++|+++++|++| + ++. ..+.+ +++.++||+||++++
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECCCceEEecCEEEEcCC
Confidence 5666543 5779999999999999999999999999 3 333 45665 335699999886543
No 349
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.03 E-value=0.0076 Score=52.31 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
+|+|||+|..|...|..|+++|++|+++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999984
No 350
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.00 E-value=0.01 Score=51.33 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
|++-.+|.|||+|..|...|..|+++|++|+++|.+.
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 6665679999999999999999999999999999864
No 351
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.99 E-value=0.0077 Score=53.23 Aligned_cols=32 Identities=34% Similarity=0.556 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
++|.|||+|..|...|..|+++|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 37999999999999999999999999999985
No 352
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.94 E-value=0.0092 Score=55.34 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-.|+|||+|.+|+-+|..|++.|.+|+|+|+++.+..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 220 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA 220 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 4899999999999999999999999999999887643
No 353
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.92 E-value=0.0087 Score=51.97 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~ 35 (328)
+|+|||+|..|...|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 354
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.89 E-value=0.0094 Score=51.34 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|+|||+|..|...|..|+++|++|+++++++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 68999999999999999999999999999864
No 355
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.87 E-value=0.0096 Score=54.02 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=31.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..+|.|||.|..|++.|..|+++|++|++++.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999999854
No 356
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.83 E-value=0.013 Score=54.29 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
-+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence 47999999999999999999999999999998876654
No 357
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.83 E-value=0.011 Score=54.48 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
.+++|||||..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999887643
No 358
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.79 E-value=0.012 Score=51.11 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~ 37 (328)
+|+|||+|..|.++|+.|+++| .+|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 6899999864
No 359
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.76 E-value=0.011 Score=55.36 Aligned_cols=36 Identities=22% Similarity=0.035 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 489999999999999999999999999999877663
No 360
>PRK04148 hypothetical protein; Provisional
Probab=95.76 E-value=0.01 Score=44.19 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
.++++||.| .|.+.|..|++.|++|+.+|-+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998654
No 361
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.75 E-value=0.011 Score=58.21 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
-+++|||||.+|+-+|..|++.|.+|+|+|+.+++-
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 479999999999999999999999999999987653
No 362
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.70 E-value=0.013 Score=53.90 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+|+|||||.+|+-+|..|++.|.+|+++|+++++-+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 5799999999999999999999999999999876543
No 363
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.67 E-value=0.013 Score=56.10 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCc
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~ 42 (328)
-+|+|||||..|+-.|..|++.|.+|+|+|+.+++...
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~ 350 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL 350 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence 47999999999999999999999999999999887653
No 364
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.66 E-value=0.035 Score=44.89 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~ 287 (328)
..+.+-+.+.+++.+.+++++++|++|..+ +++ +.|++ ++++++||+||++.+.
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeec
Confidence 345666667778889999999999999998 666 66777 5569999999987665
No 365
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.60 E-value=0.015 Score=53.48 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
-+++|||+|.+|+-+|..|++.|.+|+|+|+++.+.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 202 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL 202 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 469999999999999999999999999999987653
No 366
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.57 E-value=0.017 Score=50.37 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=32.4
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
|.+-.+|.|||+|..|.+.|..|+++|++|++++.+.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4444579999999999999999999999999999754
No 367
>PTZ00058 glutathione reductase; Provisional
Probab=95.54 E-value=0.017 Score=54.44 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=34.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
.-+|+|||||..|+-+|..|++.|.+|+|+|+++++..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 35799999999999999999999999999999887653
No 368
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.52 E-value=0.014 Score=50.31 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 369
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.51 E-value=0.018 Score=52.92 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+++|||+|..|+-.|..|++.|.+|+|+|+++.+..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 195 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 4799999999999999999999999999999876643
No 370
>PRK10262 thioredoxin reductase; Provisional
Probab=95.49 E-value=0.017 Score=50.61 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
-+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998765
No 371
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.47 E-value=0.016 Score=57.35 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~G 40 (328)
-.++|||||..|+-+|..|++.|.+|+|+|+.+++-
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 468999999999999999999999999999988643
No 372
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.41 E-value=0.018 Score=54.53 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
-+|+|||||.+|+-+|..|++.|.+|+++++++..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998764
No 373
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.40 E-value=0.018 Score=54.08 Aligned_cols=35 Identities=17% Similarity=-0.041 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
-+|+|||||.+|+-+|..|+..|.+|+|+++++.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 48999999999999999999999999999987765
No 374
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.38 E-value=0.023 Score=49.22 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~ 37 (328)
++|+|||+|..|.++|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999843
No 375
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.37 E-value=0.016 Score=49.68 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 69999999999999999999999999999754
No 376
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.36 E-value=0.019 Score=52.81 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
-+|+|||||..|+-+|..|++.|.+|+|++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4899999999999999999999999999998764
No 377
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.33 E-value=0.018 Score=52.37 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||.|..|+..|..|+++|++|++++++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 69999999999999999999999999999864
No 378
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.31 E-value=0.029 Score=43.93 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=29.7
Q ss_pred cccEEEECCCh-hHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
..+|+|||+|- +|..+|.+|.++|.+|+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 47899999995 6999999999999999999874
No 379
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.27 E-value=0.023 Score=49.95 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||+|.-|...|..|+++|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999998853
No 380
>PLN02546 glutathione reductase
Probab=95.22 E-value=0.023 Score=53.59 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG 41 (328)
-+|+|||||..|+-.|..|++.|.+|+|+|+.+.+..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4899999999999999999999999999999877543
No 381
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.16 E-value=0.025 Score=51.23 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
..+|+|+|-|.+|++||..|.++|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 468999999999999999999999999999987665
No 382
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.16 E-value=0.028 Score=48.88 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.++|.|||+|..|.+.|..|+++|++|+++.++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999864
No 383
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.11 E-value=0.029 Score=49.17 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||+|..|...|..|+++|++|++++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999853
No 384
>PRK12831 putative oxidoreductase; Provisional
Probab=95.11 E-value=0.029 Score=51.79 Aligned_cols=34 Identities=21% Similarity=0.049 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
-+|+|||||.+|+-+|..|++.|.+|+|+++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 5899999999999999999999999999998654
No 385
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.09 E-value=0.025 Score=45.58 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
+...|.|||+|..|...|...++.|++|.+++++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 346899999999999999999999999999998653
No 386
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.09 E-value=0.036 Score=45.04 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
...|+|||||-+|...|..|.+.|.+|+|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 358999999999999999999999999999764
No 387
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.09 E-value=0.034 Score=44.96 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~ 36 (328)
..+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999997 69999974
No 388
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.09 E-value=0.02 Score=48.66 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.3
Q ss_pred CcccEEEECCChhHHHHHHhhhhC-C-CeEEEeccCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVD-G-LKVLHMDRND 37 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~-G-~~V~vlE~~~ 37 (328)
++++|+|||||.+|+++|..+.++ | -+|.|+|-.+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 578999999999999999999875 4 5799999764
No 389
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.06 E-value=0.029 Score=40.07 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
...|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 568999999999999999999999999999875
No 390
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.05 E-value=0.037 Score=44.81 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=29.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEecc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~ 35 (328)
...|+|||||-.|...|..|.+.|.+|+|++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 46899999999999999999999999999975
No 391
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.02 E-value=0.038 Score=48.25 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=33.1
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~ 38 (328)
|-+..+|+|||+|..|.++|+.|+..|+ +|.|+|.+..
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3456799999999999999999999995 8999998764
No 392
>PRK13748 putative mercuric reductase; Provisional
Probab=94.96 E-value=0.032 Score=52.96 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
-+++|||||..|+-+|..|++.|.+|+|++++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 479999999999999999999999999999854
No 393
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.92 E-value=0.031 Score=48.16 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+..
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 48999999999999999999999999999997644
No 394
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.92 E-value=0.048 Score=41.06 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCe-EEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~ 36 (328)
...++|||+|-+|-.+++.|++.|.+ |+|+-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999999999999999999966 9999873
No 395
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.90 E-value=0.029 Score=49.85 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCe-EEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~ 38 (328)
-.|+|||+|..|+-+|..|++.|.+ |+|+++.+.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 4799999999999999999999987 999998654
No 396
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.89 E-value=0.026 Score=48.93 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
++|.|+|+|..|...|++|+++|++|+++=|+++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4699999999999999999999988998877653
No 397
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.89 E-value=0.026 Score=47.85 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
.-+|+|||||..|.-+|..+...|-+|+++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 468999999999999999999999999999997
No 398
>PRK06116 glutathione reductase; Validated
Probab=94.85 E-value=0.12 Score=47.57 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCcc
Q 020312 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (328)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~~ 290 (328)
.+.+.+.+.+++.|++++++++|++|+.+ ++..+.+++ +++++.||.||++++..|+
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~-~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKN-ADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEc-CCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 46677778889999999999999999876 333233454 7788999999988776554
No 399
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=94.83 E-value=0.035 Score=51.54 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
-+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 47999999999999999999999999999974
No 400
>PRK14727 putative mercuric reductase; Provisional
Probab=94.83 E-value=0.039 Score=51.23 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
-+++|||||..|+-.|..|++.|.+|+|+++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 479999999999999999999999999999753
No 401
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.76 E-value=0.048 Score=42.20 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=28.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEec
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMD 34 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE 34 (328)
...|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4689999999999999999999999999994
No 402
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.69 E-value=0.041 Score=51.23 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|.|||+|..|...|..|+++|++|+|++++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999863
No 403
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.69 E-value=0.044 Score=48.90 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..+|+|||+|.+|+.+|..|...|.+|++++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999853
No 404
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.68 E-value=0.038 Score=47.33 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999853
No 405
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.68 E-value=0.038 Score=51.35 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 406
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.66 E-value=0.04 Score=50.88 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999865
No 407
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.65 E-value=0.047 Score=50.90 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
..|.|||+|..|...|..|+++|++|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998753
No 408
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.65 E-value=0.045 Score=48.56 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHhhhhCC-CeEEEeccC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~ 36 (328)
.+|+|||+|-.|.++|+.|++.| .+|+|-+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 38999999999999999999999 999999997
No 409
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.61 E-value=0.047 Score=42.61 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=27.7
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
+|.|||-|..|...|..|.++|++|.+++++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 7999999999999999999999999999974
No 410
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.52 E-value=0.044 Score=49.23 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988885 99999999864
No 411
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.50 E-value=0.14 Score=48.52 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe----cCc--eEEcCEEEECCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~----~g~--~~~ad~vV~~~~ 286 (328)
..|.+.|.+.+++.|++|+.+++|+++..+ +|+++|+.. +++ .+.|+.||++.+
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATG 178 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATG 178 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence 468999999888899999999999999987 889999875 343 478999886543
No 412
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.49 E-value=0.043 Score=50.72 Aligned_cols=34 Identities=12% Similarity=-0.152 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
.+|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 4799999999999999999999999999997543
No 413
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.44 E-value=0.051 Score=49.62 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHhhhh--------------CCCeEEEeccCCCCCC
Q 020312 6 DVIVLGTGLKECILSGLLSV--------------DGLKVLHMDRNDYYGG 41 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~--------------~G~~V~vlE~~~~~GG 41 (328)
.++|||||.+|+-.|.+|++ .|.+|+|+|+++++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence 79999999999999999985 4789999999876543
No 414
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.43 E-value=0.047 Score=50.39 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~ 38 (328)
-+|+|||||.+|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 589999999999999999999997 8999998654
No 415
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.43 E-value=0.045 Score=50.36 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~ 37 (328)
++|+|||.|..|+..|..|+++| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 36999999999999999999985 8899998653
No 416
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.41 E-value=0.12 Score=46.51 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe-cCceEEcCEEEECCCCCc
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~-~g~~~~ad~vV~~~~~~~ 289 (328)
..+-+.+.+.++++|+++.+++.+.++.-+.+|+++-|.+ ++.++.||.||+..+..|
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 3566777788899999999999999999886789998888 899999999998766544
No 417
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.38 E-value=0.047 Score=50.44 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHH-HHHhhhhCCCeEEEeccCCC
Q 020312 4 EYDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~-aA~~L~~~G~~V~vlE~~~~ 38 (328)
..+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 357999999999999 69999999999999998653
No 418
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.37 E-value=0.061 Score=49.46 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
...++|+|.|.+|+++|..|+++|.+|++.|..+..
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 357999999999999999999999999999976543
No 419
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.36 E-value=0.076 Score=40.32 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=29.5
Q ss_pred ccEEEECC-ChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312 5 YDVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~-G~aGl~aA~~L~~~G--~~V~vlE~~~ 37 (328)
++|+|||+ |..|.+.|+.|.+.| .++.+++.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 999999999999987 5799999863
No 420
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.32 E-value=0.074 Score=38.69 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
|+|+|.|-.|...|..|.+.+.+|+++|.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999878999999864
No 421
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.32 E-value=0.16 Score=48.22 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe--cCc--eEEcCE-EEE-CCCCC
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKK-VVC-DPSYL 288 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~--~g~--~~~ad~-vV~-~~~~~ 288 (328)
..+...|.+.+++.|++++++++|++|..+ +++|++|.. +++ .+.|++ ||+ +.++.
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 457788888888899999999999999987 788888876 443 478874 776 55553
No 422
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.25 E-value=0.062 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.286 Sum_probs=28.9
Q ss_pred cEEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.||| +|..|.+.|..|+++|++|+++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999997753
No 423
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.20 E-value=0.057 Score=50.25 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
..|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999964
No 424
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.17 E-value=0.082 Score=46.08 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~ 37 (328)
..+|+|||+|-.|.++|+.|+..|. ++.|+|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4799999999999999999999996 899999853
No 425
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.10 E-value=0.056 Score=52.67 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
..|+|||+|..|...|..++.+|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998753
No 426
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.07 E-value=0.09 Score=42.54 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
..++|+|.|-.|..+|..|.+.|.+|++.+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999999999999999999999999999875
No 427
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.061 Score=49.49 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..++|+|+|-+|+++|..|+++|.+|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999999999999999999754
No 428
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.03 E-value=0.23 Score=46.20 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHhhhhC-CCeEEEeccC--------CCCCCccccc
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRN--------DYYGGESSSL 46 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~~--------~~~GG~~~s~ 46 (328)
.+||++|||||.+|..||..++++ |.+|+|+|+. +.+||.|-..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~ 54 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV 54 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc
Confidence 579999999999999999999997 9999999984 5789977543
No 429
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=93.98 E-value=0.062 Score=52.30 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..|.|||+|..|...|..++.+|++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 430
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.96 E-value=0.063 Score=46.13 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..|.|||||..|-..|+.++..|++|+++|.+.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 579999999999999999999889999999973
No 431
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.94 E-value=0.13 Score=35.26 Aligned_cols=32 Identities=38% Similarity=0.453 Sum_probs=29.3
Q ss_pred cccEEEECCChhHHHHHHhhhhC-CCeEEEecc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDR 35 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~-G~~V~vlE~ 35 (328)
..+++|+|.|..|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999998 688999988
No 432
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.93 E-value=0.08 Score=47.37 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=31.6
Q ss_pred CcccEEEEC-CChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 3 EEYDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 3 ~~~dvvIvG-~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
....|+||| .|..|-+.|..|.++|++|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 346899999 89999999999999999999999864
No 433
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.92 E-value=0.069 Score=48.65 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|+|||-|.+|+++|..|.++|.+|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999754
No 434
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.05 Score=46.94 Aligned_cols=34 Identities=18% Similarity=-0.030 Sum_probs=28.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..||+|||||-+|.-||..|+--=..|+|||=.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 4699999999999999999984447899999543
No 435
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.90 E-value=0.082 Score=45.98 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~ 38 (328)
.+|+|||+|..|.+.|+.|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999998543
No 436
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.83 E-value=0.099 Score=45.48 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND 37 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~ 37 (328)
+++.+|+|||+|-.|.++|+.|+..| .++.|+|.+.
T Consensus 1 ~~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 1 KPRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 34679999999999999999999888 4799999754
No 437
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.83 E-value=0.083 Score=45.93 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHhhhhCC--CeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G--~~V~vlE~~~ 37 (328)
+|+|||+|..|.++|+.|+..| .++.+++++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 6899999864
No 438
>PLN02507 glutathione reductase
Probab=93.75 E-value=0.26 Score=46.05 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=37.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEecc---------CCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~---------~~~~GG~~~s 45 (328)
+||++|||||.+|+.||..+++.|.+|+|+|+ .+.+||.|..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 58999999999999999999999999999996 3678998744
No 439
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.70 E-value=0.071 Score=49.35 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.-+|+|+|+|.+||.|+..++..|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998754
No 440
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.68 E-value=0.092 Score=48.18 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..+|.|+|-|.+|++++..|.++|.+|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3579999999999999999999999999999754
No 441
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.65 E-value=0.087 Score=47.46 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.-.|+|+|.|..|+.+|..|+..|.+|+++|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3579999999999999999999999999999864
No 442
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.64 E-value=0.078 Score=52.63 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=33.1
Q ss_pred CCCcccEEEECCChhHHHH-HHhhhhCCCeEEEeccCC
Q 020312 1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~a-A~~L~~~G~~V~vlE~~~ 37 (328)
|++-..+.|||-|-+|+++ |..|.++|++|++.|.+.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 5655679999999999999 999999999999999764
No 443
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.57 E-value=0.09 Score=51.76 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCe-EEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~~ 38 (328)
-+|+|||||.+|+-+|..|.+.|.+ |+|+++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998654
No 444
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.55 E-value=0.098 Score=48.18 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=31.7
Q ss_pred CCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 2 ~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
...--|+|||.|-+|+++|..|.++|++|++.|...
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 334568999999999999999999999999999764
No 445
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.49 E-value=0.073 Score=51.98 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4699999999999999999999999999998653
No 446
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.44 E-value=0.11 Score=45.64 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~ 37 (328)
+..|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4689999999999999999999997 899999864
No 447
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.44 E-value=0.11 Score=45.65 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=30.7
Q ss_pred cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~ 36 (328)
+.+|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5789999999999999999999997 89999985
No 448
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.43 E-value=0.12 Score=43.60 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY 39 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~~~ 39 (328)
+..|+|||.|-.|..+|..|++.| .+++|+|....-
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 578999999999999999999999 789999986543
No 449
>PRK14694 putative mercuric reductase; Provisional
Probab=93.37 E-value=0.34 Score=44.88 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=37.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCCCCcccc
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~s 45 (328)
+|||+|||||++|++||..|++.|++|+|+|+. .+||.|..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 599999999999999999999999999999986 68887643
No 450
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.36 E-value=0.11 Score=44.54 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~ 37 (328)
.+|+|||+|-+|-++|+.|++.|. +|+|++++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999996 799998853
No 451
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.36 E-value=0.12 Score=44.59 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=31.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..+|+|||.|.+|..+|..|+..|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999863
No 452
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.33 E-value=0.11 Score=42.84 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCC---eEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGL---KVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~---~V~vlE~~~ 37 (328)
..+++|+|+|-+|..+|..|.+.|. +|.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4589999999999999999999996 599999973
No 453
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.27 E-value=0.096 Score=48.93 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..|.|+|.|.+|+++|..|.++|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999754
No 454
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.27 E-value=0.12 Score=38.83 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.3
Q ss_pred cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~ 36 (328)
+.+|+|+|+|-.|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999996 79999973
No 455
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.26 E-value=0.099 Score=45.31 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=28.4
Q ss_pred EEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312 7 VIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (328)
Q Consensus 7 vvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~ 37 (328)
|+|||+|..|.++|+.|+.+|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999874
No 456
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.23 E-value=0.12 Score=47.98 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
..|.|+|.|.+|+++|..|.+.|.+|++.|+.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 46999999999999999999999999999964
No 457
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.17 E-value=0.11 Score=47.75 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=28.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3589999999999999999995 9999999954
No 458
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.13 E-value=0.12 Score=39.77 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=27.5
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
-..++|+|-|..|-.+|..|+..|-+|+|.|..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 3579999999999999999999999999999865
No 459
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.13 E-value=0.28 Score=32.94 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCcceeEEEecCCCcEEEEEe
Q 020312 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS 271 (328)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~v~~v~~ 271 (328)
..+.+.+.+.+++.|+++++++.|++|..+ ++.+. |++
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~~~-V~~ 77 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDGVE-VTL 77 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTSEE-EEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEEE-EEE
Confidence 346667778889999999999999999998 44455 665
No 460
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.10 E-value=0.13 Score=38.75 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=27.2
Q ss_pred EEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 7 vvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
++|+|+|..+...|..++..|++|+|+|-+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999874
No 461
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.09 E-value=0.11 Score=44.78 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999864
No 462
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.04 E-value=0.16 Score=40.84 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=29.5
Q ss_pred cccEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
..+++|+|| |-.|..+|..|++.|.+|+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999997 999999999999999999999764
No 463
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.03 E-value=0.15 Score=44.58 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=31.4
Q ss_pred CcccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~ 37 (328)
+..+|+|||+|-.|.++|+.|+..| .++.++|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4579999999999999999999999 6899999864
No 464
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.03 E-value=0.11 Score=50.73 Aligned_cols=33 Identities=33% Similarity=0.257 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHhhh-hCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~-~~G~~V~vlE~~~ 37 (328)
..|+|||+|..|...|..++ .+|++|+++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999999 8899999999864
No 465
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=93.01 E-value=0.098 Score=50.87 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHhhh-hCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~-~~G~~V~vlE~~~ 37 (328)
..|.|||+|..|...|..++ ++|++|+++|.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 36999999999999999998 5899999999875
No 466
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.88 E-value=0.13 Score=47.41 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|+|+|+|..|...|..|.+.|++|+++|++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 69999999999999999999999999999854
No 467
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=92.71 E-value=0.15 Score=43.36 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
.+|.+||-|..|...|.+|.++|++|+|+.++...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence 36899999999999999999999999999998544
No 468
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.70 E-value=0.13 Score=51.69 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
-+|+|||||.+|+-||..+.+.|.+|+++.+++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 4799999999999999999999999999998753
No 469
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.65 E-value=0.16 Score=44.10 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHhhhhCCC--eEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~~ 37 (328)
.+|+|||+|..|.+.|..|++.|. +|++++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 579999999999999999999994 899998863
No 470
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.64 E-value=0.17 Score=45.25 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCcccEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312 2 DEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 2 ~~~~dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
.++++|+|.|| |..|...+.+|.++|++|+++.+.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 34688999999 999999999999999999999874
No 471
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.64 E-value=0.18 Score=39.82 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~ 37 (328)
+|+|||+|..|..+|..|++.|. +++++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999997 599999843
No 472
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.62 E-value=0.17 Score=46.80 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998764
No 473
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.59 E-value=0.14 Score=46.35 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=27.8
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
.|.|+|.|-+|+++|..|. +|.+|++.|..
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 5899999999999999999 99999999954
No 474
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.57 E-value=0.18 Score=43.36 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
...++|+|.|-.|..+|..|...|.+|++++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999854
No 475
>PRK05442 malate dehydrogenase; Provisional
Probab=92.57 E-value=0.18 Score=44.13 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCCcccEEEECC-ChhHHHHHHhhhhCCC-------eEEEeccCC
Q 020312 1 MDEEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRND 37 (328)
Q Consensus 1 ~~~~~dvvIvG~-G~aGl~aA~~L~~~G~-------~V~vlE~~~ 37 (328)
|....+|+|||+ |..|.++|+.|...|. ++.++|...
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence 677889999998 9999999999998773 799998743
No 476
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.53 E-value=0.13 Score=47.49 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
.+|.|||.|.+|+++|..|.++|++|++.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 46899999999999999999999999999964
No 477
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.53 E-value=0.15 Score=44.15 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||.|.-|...|..|+++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 79999999999999999999999999999863
No 478
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.53 E-value=0.21 Score=40.52 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~ 36 (328)
+.+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 5789999999999999999999995 89999974
No 479
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.50 E-value=0.12 Score=47.58 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|+|||+|.+|+=.|.+|++.+.+|+++.+++
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 579999999999999999999999999999865
No 480
>PRK06849 hypothetical protein; Provisional
Probab=92.50 E-value=0.19 Score=45.26 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=34.2
Q ss_pred CCCcccEEEECCCh-hHHHHHHhhhhCCCeEEEeccCCC
Q 020312 1 MDEEYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 1 ~~~~~dvvIvG~G~-aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
|..+..|+|+|++. .|+..|..|.++|++|++++....
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 66788999999998 599999999999999999998753
No 481
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.49 E-value=0.19 Score=42.84 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
...++|+|+|-+|.++|..|++.|.+|+|+.++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357899999999999999999999999999874
No 482
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.44 E-value=0.06 Score=47.74 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=0.0
Q ss_pred EEEECCChhHHHHHHhhh--------------hCCCeEEEeccCCCC
Q 020312 7 VIVLGTGLKECILSGLLS--------------VDGLKVLHMDRNDYY 39 (328)
Q Consensus 7 vvIvG~G~aGl~aA~~L~--------------~~G~~V~vlE~~~~~ 39 (328)
++|||||++|.-.|.+|+ +.-.+|+++|+.+.+
T Consensus 221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
No 483
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.40 E-value=0.21 Score=40.76 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHhhhhCCC-eEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~ 36 (328)
+..|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5689999999999999999999996 59999974
No 484
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.39 E-value=0.22 Score=37.77 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHhhhhCCC-eEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~ 37 (328)
+|+|||.|-.|..+|..|++.|. +++|++...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999996 799998743
No 485
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.39 E-value=0.19 Score=43.42 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999999864
No 486
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=92.29 E-value=0.18 Score=43.65 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||.|..|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998864
No 487
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=92.28 E-value=0.25 Score=41.39 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=31.8
Q ss_pred CcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 3 ~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+...++|+|+|..+...|..+...|++|+|+|-++
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~ 133 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSRE 133 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCc
Confidence 45789999999999999999999999999999654
No 488
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.27 E-value=0.2 Score=43.40 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHhhhhCCC--eEEEeccC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRN 36 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~--~V~vlE~~ 36 (328)
+|+|||+|..|.++|+.|...|. ++.|+|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 58999999999999999998884 79999975
No 489
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.18 E-value=0.23 Score=41.47 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCC-CeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~~ 37 (328)
..+|+|||+|-.|..+|..|+..| -+++++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 478999999999999999999999 5788888743
No 490
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.14 E-value=0.23 Score=44.61 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
...|+|+|.|..|..+|..|+..|.+|+++|.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4579999999999999999999999999999765
No 491
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.11 E-value=0.27 Score=37.76 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=29.4
Q ss_pred cccEEEECCChhHHHHHHhhhhCC-CeEEEeccC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G-~~V~vlE~~ 36 (328)
..+++|+|+|..|.+.|..|.+.| .+|++++++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 467999999999999999999996 889999875
No 492
>PRK08017 oxidoreductase; Provisional
Probab=92.01 E-value=0.24 Score=41.54 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=28.4
Q ss_pred cEEEECC-ChhHHHHHHhhhhCCCeEEEeccC
Q 020312 6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRN 36 (328)
Q Consensus 6 dvvIvG~-G~aGl~aA~~L~~~G~~V~vlE~~ 36 (328)
.++|+|| |-.|...|.+|+++|.+|+++.++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5999998 999999999999999999998775
No 493
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=92.01 E-value=0.17 Score=46.58 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
.+|.|||.|..|...|..|+++|++|++++++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 379999999999999999999999999999864
No 494
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.95 E-value=0.7 Score=43.21 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=38.6
Q ss_pred CCCcccEEEECCChhHHHHHHhhhhCCCeEEEeccCC--------CCCCcccc
Q 020312 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS 45 (328)
Q Consensus 1 ~~~~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~--------~~GG~~~s 45 (328)
|...|||+|||||.+|++||.+|+++|++|+|+|+.. .+||.|-.
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n 54 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN 54 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence 4456999999999999999999999999999999731 48998633
No 495
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.93 E-value=0.25 Score=42.51 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHhhhhCCCe-EEEeccCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRND 37 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~~-V~vlE~~~ 37 (328)
..++|+|+|-+|.++|+.|++.|.+ |+|+.|+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4689999999999999999999976 99998753
No 496
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.93 E-value=0.25 Score=42.12 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHhhhhCCCeEEEeccCCCC
Q 020312 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (328)
Q Consensus 4 ~~dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~~ 39 (328)
...|+|||.|..|-+.|..|+++|+.|.++.++...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~ 38 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA 38 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH
Confidence 468999999999999999999999999999886643
No 497
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.92 E-value=0.19 Score=48.67 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHhhhhCCC-eEEEeccCCC
Q 020312 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (328)
Q Consensus 5 ~dvvIvG~G~aGl~aA~~L~~~G~-~V~vlE~~~~ 38 (328)
-+|+|||||.+|+-+|..|.+.|. +|+|++++++
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 579999999999999999999995 6999998764
No 498
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=91.89 E-value=0.2 Score=44.08 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHhhhhCC--------CeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDG--------LKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G--------~~V~vlE~~~ 37 (328)
+|+|||+|.-|.+.|..|+++| ++|+++.++.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~ 40 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE 40 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence 5899999999999999999999 9999998743
No 499
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.84 E-value=0.22 Score=43.16 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~ 37 (328)
+|.|||.|..|...|..|.++|++|++++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 69999999999999999999999999998864
No 500
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.80 E-value=0.19 Score=45.97 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHhhhhCCCeEEEeccCCC
Q 020312 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (328)
Q Consensus 6 dvvIvG~G~aGl~aA~~L~~~G~~V~vlE~~~~ 38 (328)
+|.|||-|-+|+++|..|.++|++|++.|.+..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 478999999999999999999999999997543
Done!