BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020317
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 192 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVM-RHWSTYIVEDDFKFIAGNGLNAV 245
PS+FE G Q E+ T G + A +++ +HWST+I E DFK I+ GLN V
Sbjct: 26 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAASRILQKHWSTWITEQDFKQISNLGLNFV 85
Query: 246 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 86 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 117
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPN 60
I+ VNLGGW V E ++ PSLF+ N
Sbjct: 9 IRGVNLGGWFVLEPYMTPSLFEPFQN 34
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 192 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVM-RHWSTYIVEDDFKFIAGNGLNAV 245
PS+FE G Q E+ T G + A +++ +HWST+I E DFK I+ GLN V
Sbjct: 26 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 85
Query: 246 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 86 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 117
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPN 60
I+ VNLGGW V E ++ PSLF+ N
Sbjct: 9 IRGVNLGGWFVLEPYMTPSLFEPFQN 34
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 192 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVM-RHWSTYIVEDDFKFIAGNGLNAV 245
PS+FE G Q E+ T G + A +++ +HWST+I E DFK I+ GLN V
Sbjct: 31 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 90
Query: 246 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 91 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 122
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPN 60
I+ VNLGGW V E ++ PSLF+ N
Sbjct: 14 IRGVNLGGWFVLEPYMTPSLFEPFQN 39
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 192 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVM-RHWSTYIVEDDFKFIAGNGLNAV 245
PS+FE G Q E+ T G + A +++ +HWST+I E DFK I+ GLN V
Sbjct: 31 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 90
Query: 246 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 91 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 122
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPN 60
I+ VNLGGW V E ++ PSLF+ N
Sbjct: 14 IRGVNLGGWFVLEPYMTPSLFEPFQN 39
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 192 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVM-RHWSTYIVEDDFKFIAGNGLNAV 245
PS+FE G Q E+ T G + A +++ +HWST+I E DFK I+ GLN V
Sbjct: 32 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 91
Query: 246 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 92 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 123
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPN 60
I+ VNLGGW V E ++ PSLF+ N
Sbjct: 15 IRGVNLGGWFVLEPYMTPSLFEPFQN 40
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 192 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVM-RHWSTYIVEDDFKFIAGNGLNAV 245
PS+FE G Q E+ T G + A +++ +HWST+I E DFK I+ GLN V
Sbjct: 32 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 91
Query: 246 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 92 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 123
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPN 60
I+ VNLGGW V E ++ PSLF+ N
Sbjct: 15 IRGVNLGGWFVLEPYMTPSLFEPFQN 40
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 192 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVM-RHWSTYIVEDDFKFIAGNGLNAV 245
PS+FE G Q E+ T G + A +++ +HWST+I E DFK I+ GLN V
Sbjct: 32 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 91
Query: 246 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 92 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 123
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPN 60
I+ VNLGGW V E ++ PSLF+ N
Sbjct: 15 IRGVNLGGWFVLEPYMTPSLFEPFQN 40
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 192 PSVFEMTIAGRMQG-----EFQVTNGYGPQKAPQVM-RHWSTYIVEDDFKFIAGNGLNAV 245
PS+FE G Q E+ T G + A +++ +HWST+I E DFK I+ GLN V
Sbjct: 32 PSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFV 91
Query: 246 RIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
RIP+G+W A PYV G ++ L+ A WA
Sbjct: 92 RIPIGYW-AFQLLDNDPYVQGQVQYLEKALGWA 123
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPN 60
I+ VNLGGW V + ++ PSLF+ N
Sbjct: 15 IRGVNLGGWFVLQPYMTPSLFEPFQN 40
>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
Length = 408
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 220 QVMRHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRA-LDNAFTWA 278
++ HWST+ E DF IA G N VRIP+G+W A PYV G + LD A WA
Sbjct: 65 RLQSHWSTFYQEQDFANIASQGFNLVRIPIGYW-AFQILDDDPYVSGLQESYLDQAIGWA 123
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 35 IKAVNLGGWLVTEGWIKPSLFDGIPNKDFLDGTQLQFKSVTVGKYLCAENGGGTIVVANR 94
I+ VN+GGWL+ E +I PSLF+ D D + + V +Y + G + A
Sbjct: 13 IRGVNIGGWLLLEPYITPSLFEAFRTNDDND------EGIPVDEYHFCQYLGKDL--AKS 64
Query: 95 TSASGWETF 103
S W TF
Sbjct: 65 RLQSHWSTF 73
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 223 RHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
H+ T+I E D + IA G + VR+P + + Y L +D W
Sbjct: 23 EHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWC 78
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 223 RHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA 278
H+ T+I E D + IA G + VR+P + + Y L +D W
Sbjct: 23 EHFDTFITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWC 78
>pdb|3RJX|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase
Length = 320
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 225 WSTYIVEDDFKFIAGNGLNAVRIPVGW 251
W YI ++ FK I G ++VRIP+ W
Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPIRW 64
>pdb|3RJY|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase In Complex With Substrate
Length = 320
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 225 WSTYIVEDDFKFIAGNGLNAVRIPVGW 251
W YI ++ FK I G ++VRIP+ W
Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPIRW 64
>pdb|3NCO|A Chain A, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
pdb|3NCO|B Chain B, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
Length = 320
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 225 WSTYIVEDDFKFIAGNGLNAVRIPVGW 251
W YI ++ FK I G ++VRIP+ W
Sbjct: 38 WGVYIEDEYFKIIKERGFDSVRIPIRW 64
>pdb|3VDH|A Chain A, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
pdb|3VDH|B Chain B, Crystal Structure Of A Putative Beta-1,4-Endoglucanase
CELLULASE From Prevotella Bryantii
Length = 353
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 230 VEDDFKFIAGNGLNAVRIPVGWWMASD 256
+D F+ NG NAVRIPV W+ D
Sbjct: 54 TQDXXTFLXQNGFNAVRIPVTWYEHXD 80
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 253 MASDPTPPAPYVGGSLRALDNAFTWAGYAFF-----------PVPSDITISVTTSQDLTI 301
+ S P P +P GG +A++ AF + G FF PV I T+QDL
Sbjct: 308 LVSTPVPGSPAAGGVDKAINMAFNFNGSNFFINGASFTPPSVPVLLQILSGAQTAQDLLP 367
Query: 302 MG 303
G
Sbjct: 368 SG 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,832,799
Number of Sequences: 62578
Number of extensions: 485781
Number of successful extensions: 1050
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 28
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)