Query 020317
Match_columns 327
No_of_seqs 341 out of 1441
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00257 Fascin Fascin-like dom 99.7 3.4E-17 7.4E-22 135.3 10.0 114 67-188 2-115 (119)
2 COG2730 BglC Endoglucanase [Ca 99.7 7.2E-17 1.6E-21 160.3 8.1 105 202-308 46-154 (407)
3 PF06268 Fascin: Fascin domain 99.6 1.6E-15 3.5E-20 124.5 8.3 104 78-188 3-107 (111)
4 PF00150 Cellulase: Cellulase 99.3 4E-12 8.7E-17 117.8 6.6 81 218-299 9-91 (281)
5 cd00257 Fascin Fascin-like dom 99.0 1.9E-09 4.1E-14 88.9 9.0 72 112-188 3-74 (119)
6 PF06268 Fascin: Fascin domain 98.6 5.5E-08 1.2E-12 79.7 5.0 77 66-149 35-111 (111)
7 PF06229 FRG1: FRG1-like famil 98.6 1.7E-07 3.8E-12 84.2 8.5 82 99-186 26-109 (191)
8 TIGR03356 BGL beta-galactosida 98.1 4.9E-06 1.1E-10 83.6 6.2 65 224-291 52-116 (427)
9 PF06229 FRG1: FRG1-like famil 97.9 1.6E-05 3.6E-10 71.6 5.0 109 35-153 4-119 (191)
10 PRK09852 cryptic 6-phospho-bet 97.6 0.00011 2.4E-09 74.8 6.4 66 224-291 69-134 (474)
11 PF02449 Glyco_hydro_42: Beta- 97.5 0.00014 3E-09 71.6 5.0 60 231-295 13-74 (374)
12 PRK15014 6-phospho-beta-glucos 97.3 0.00057 1.2E-08 69.8 7.2 66 224-291 67-132 (477)
13 COG2723 BglB Beta-glucosidase/ 96.8 0.0029 6.3E-08 63.9 6.5 65 224-291 57-122 (460)
14 PF07745 Glyco_hydro_53: Glyco 96.7 0.0029 6.4E-08 61.7 5.9 55 230-291 26-80 (332)
15 PRK13511 6-phospho-beta-galact 96.5 0.0051 1.1E-07 62.7 6.7 65 224-291 52-116 (469)
16 PF00232 Glyco_hydro_1: Glycos 96.5 0.0028 6E-08 64.3 4.6 65 224-291 56-121 (455)
17 COG3867 Arabinogalactan endo-1 96.4 0.0082 1.8E-07 57.5 6.8 57 231-291 66-126 (403)
18 TIGR01233 lacG 6-phospho-beta- 96.4 0.0071 1.5E-07 61.6 6.8 65 224-291 51-115 (467)
19 PRK09589 celA 6-phospho-beta-g 96.4 0.0068 1.5E-07 62.0 6.6 65 224-291 65-130 (476)
20 PLN02998 beta-glucosidase 96.3 0.0082 1.8E-07 61.7 6.5 65 224-291 80-144 (497)
21 PRK09593 arb 6-phospho-beta-gl 96.3 0.0086 1.9E-07 61.2 6.6 65 224-291 71-136 (478)
22 PF04601 DUF569: Protein of un 96.2 0.036 7.8E-07 47.7 9.1 105 65-174 6-118 (142)
23 PLN02814 beta-glucosidase 96.2 0.0091 2E-07 61.4 6.5 65 224-291 75-139 (504)
24 PLN02849 beta-glucosidase 96.2 0.009 2E-07 61.5 6.1 65 224-291 77-141 (503)
25 PF01301 Glyco_hydro_35: Glyco 95.9 0.0099 2.2E-07 57.6 4.5 57 231-289 27-83 (319)
26 smart00642 Aamy Alpha-amylase 95.7 0.037 8E-07 48.7 7.2 57 233-289 24-90 (166)
27 PF00128 Alpha-amylase: Alpha 95.5 0.029 6.4E-07 51.9 6.0 58 232-289 8-72 (316)
28 KOG3962 Predicted actin-bundli 94.8 0.047 1E-06 50.1 4.9 70 98-173 81-150 (246)
29 TIGR01515 branching_enzym alph 94.7 0.07 1.5E-06 56.2 6.7 54 234-289 163-226 (613)
30 PRK12313 glycogen branching en 94.4 0.088 1.9E-06 55.6 6.6 55 234-289 177-240 (633)
31 TIGR02402 trehalose_TreZ malto 94.0 0.13 2.9E-06 53.4 7.0 56 233-289 116-180 (542)
32 smart00791 Agglutinin Amaranth 93.6 0.35 7.6E-06 41.2 7.5 94 68-173 7-113 (139)
33 PLN00196 alpha-amylase; Provis 93.5 0.2 4.4E-06 50.6 7.1 64 231-296 47-121 (428)
34 TIGR02403 trehalose_treC alpha 93.5 0.21 4.6E-06 51.9 7.4 57 232-289 31-95 (543)
35 COG1523 PulA Type II secretory 93.4 0.17 3.8E-06 53.9 6.7 73 225-298 197-296 (697)
36 PRK05402 glycogen branching en 93.4 0.16 3.5E-06 54.6 6.5 54 234-289 272-335 (726)
37 COG1874 LacA Beta-galactosidas 93.4 0.1 2.2E-06 55.4 4.8 52 231-287 33-86 (673)
38 PF14200 RicinB_lectin_2: Rici 93.1 0.63 1.4E-05 37.0 8.1 71 102-175 4-81 (105)
39 PLN02361 alpha-amylase 93.0 0.28 6.1E-06 49.2 7.1 59 232-291 33-101 (401)
40 PLN02447 1,4-alpha-glucan-bran 93.0 0.2 4.4E-06 53.9 6.4 58 231-289 254-320 (758)
41 PRK10933 trehalose-6-phosphate 92.9 0.29 6.4E-06 51.0 7.4 56 232-289 37-101 (551)
42 TIGR02100 glgX_debranch glycog 92.9 0.19 4.1E-06 53.8 6.0 56 233-289 189-265 (688)
43 PRK12568 glycogen branching en 92.8 0.23 5.1E-06 53.3 6.6 57 231-289 273-339 (730)
44 PF04601 DUF569: Protein of un 92.8 0.59 1.3E-05 40.3 7.8 63 109-173 5-68 (142)
45 PRK03705 glycogen debranching 92.8 0.22 4.8E-06 53.0 6.3 57 233-289 184-262 (658)
46 PRK14705 glycogen branching en 92.7 0.22 4.8E-06 56.3 6.5 57 232-289 770-835 (1224)
47 smart00791 Agglutinin Amaranth 92.7 0.63 1.4E-05 39.7 7.6 68 112-182 7-76 (139)
48 PRK14706 glycogen branching en 92.2 0.29 6.2E-06 52.0 6.3 57 232-289 172-237 (639)
49 PLN02960 alpha-amylase 92.0 0.33 7.1E-06 53.0 6.5 63 231-295 420-494 (897)
50 TIGR02456 treS_nterm trehalose 92.0 0.45 9.7E-06 49.4 7.3 56 233-289 33-96 (539)
51 PF07468 Agglutinin: Agglutini 91.6 0.6 1.3E-05 40.6 6.5 75 98-173 40-125 (153)
52 COG0296 GlgB 1,4-alpha-glucan 91.6 0.34 7.4E-06 51.1 5.9 59 231-289 168-234 (628)
53 PRK10785 maltodextrin glucosid 91.2 0.49 1.1E-05 49.8 6.7 56 232-289 183-246 (598)
54 PRK09441 cytoplasmic alpha-amy 91.1 0.55 1.2E-05 47.9 6.8 59 229-289 24-101 (479)
55 PRK09505 malS alpha-amylase; R 91.0 0.62 1.3E-05 49.9 7.3 55 233-289 235-312 (683)
56 TIGR02104 pulA_typeI pullulana 91.0 0.47 1E-05 49.9 6.3 57 232-289 168-249 (605)
57 PF07468 Agglutinin: Agglutini 90.7 1.7 3.7E-05 37.8 8.5 68 113-182 8-83 (153)
58 PLN02784 alpha-amylase 90.6 0.73 1.6E-05 50.3 7.3 63 231-295 524-596 (894)
59 COG0366 AmyA Glycosidases [Car 90.3 0.47 1E-05 47.6 5.5 57 232-290 33-98 (505)
60 PF00167 FGF: Fibroblast growt 90.2 2 4.4E-05 35.4 8.3 64 113-181 3-67 (122)
61 TIGR02102 pullulan_Gpos pullul 89.5 0.81 1.8E-05 51.5 6.8 22 268-289 554-575 (1111)
62 KOG3962 Predicted actin-bundli 89.3 1.2 2.7E-05 41.0 6.7 72 112-186 49-123 (246)
63 PLN03059 beta-galactosidase; P 89.0 0.78 1.7E-05 49.9 6.1 56 231-288 62-117 (840)
64 PRK14510 putative bifunctional 88.7 0.86 1.9E-05 51.9 6.5 64 231-295 190-275 (1221)
65 PF03198 Glyco_hydro_72: Gluca 88.7 0.94 2E-05 43.9 5.8 46 231-291 56-101 (314)
66 PF14488 DUF4434: Domain of un 88.7 1.2 2.6E-05 39.2 6.1 61 231-291 23-87 (166)
67 PLN02877 alpha-amylase/limit d 87.0 1.5 3.3E-05 48.6 6.8 22 268-289 465-486 (970)
68 PF02836 Glyco_hydro_2_C: Glyc 86.2 0.87 1.9E-05 43.2 4.1 43 231-291 39-81 (298)
69 PRK14511 maltooligosyl trehalo 85.5 2.3 4.9E-05 46.8 7.2 56 232-289 24-89 (879)
70 TIGR02401 trehalose_TreY malto 85.4 2.1 4.5E-05 46.8 6.8 56 232-289 20-85 (825)
71 PF00167 FGF: Fibroblast growt 85.2 3.6 7.7E-05 33.9 6.8 72 98-175 29-104 (122)
72 PRK14507 putative bifunctional 84.4 2.1 4.5E-05 50.1 6.6 56 232-289 762-827 (1693)
73 COG3589 Uncharacterized conser 84.2 1.8 3.9E-05 42.4 5.1 53 231-291 16-71 (360)
74 PLN02801 beta-amylase 83.4 3.9 8.4E-05 42.1 7.3 57 231-291 40-98 (517)
75 PLN02705 beta-amylase 82.9 3.9 8.4E-05 43.0 7.2 57 231-291 271-329 (681)
76 PLN02161 beta-amylase 82.9 4.5 9.7E-05 41.7 7.6 57 231-291 120-178 (531)
77 PLN02803 beta-amylase 82.2 4.7 0.0001 41.8 7.4 57 231-291 110-168 (548)
78 PF01373 Glyco_hydro_14: Glyco 81.6 2.2 4.8E-05 42.7 4.8 57 231-291 19-77 (402)
79 PLN00197 beta-amylase; Provisi 81.1 5.3 0.00012 41.5 7.4 57 231-291 130-188 (573)
80 PF13204 DUF4038: Protein of u 80.3 4.6 0.0001 38.5 6.4 58 234-291 36-111 (289)
81 PLN02905 beta-amylase 80.1 5.8 0.00013 41.9 7.4 57 231-291 289-347 (702)
82 PF14871 GHL6: Hypothetical gl 79.7 5.5 0.00012 33.7 6.0 56 232-289 4-64 (132)
83 COG2730 BglC Endoglucanase [Ca 78.4 0.76 1.6E-05 46.0 0.4 81 30-127 13-94 (407)
84 PF05913 DUF871: Bacterial pro 76.3 2.8 6.1E-05 41.5 3.7 26 266-291 44-69 (357)
85 PRK08208 coproporphyrinogen II 75.9 3.7 8.1E-05 41.3 4.6 65 227-295 137-204 (430)
86 PRK05904 coproporphyrinogen II 75.3 4.2 9.2E-05 39.9 4.7 65 227-295 99-166 (353)
87 KOG0496 Beta-galactosidase [Ca 75.1 6.5 0.00014 41.6 6.1 58 231-290 52-109 (649)
88 KOG0470 1,4-alpha-glucan branc 75.1 4.4 9.5E-05 43.4 4.9 59 229-289 256-331 (757)
89 PRK10150 beta-D-glucuronidase; 75.1 4.1 8.9E-05 42.8 4.8 41 231-289 316-356 (604)
90 KOG0471 Alpha-amylase [Carbohy 74.6 5.2 0.00011 41.8 5.3 55 233-289 45-108 (545)
91 KOG0626 Beta-glucosidase, lact 74.3 8.2 0.00018 40.0 6.5 73 231-304 94-168 (524)
92 PRK07379 coproporphyrinogen II 73.0 5.2 0.00011 40.0 4.7 63 229-295 113-178 (400)
93 TIGR02455 TreS_stutzeri trehal 72.6 11 0.00024 40.2 7.1 60 231-291 77-152 (688)
94 PRK05799 coproporphyrinogen II 70.8 7.5 0.00016 38.2 5.2 66 227-296 95-163 (374)
95 PRK05628 coproporphyrinogen II 70.4 6.6 0.00014 38.6 4.7 66 227-296 104-172 (375)
96 cd00058 FGF Acidic and basic f 69.7 23 0.00051 29.5 7.3 60 117-181 5-65 (123)
97 PRK08446 coproporphyrinogen II 69.4 7.8 0.00017 37.9 5.0 72 221-298 88-163 (350)
98 TIGR02103 pullul_strch alpha-1 69.4 5.6 0.00012 44.0 4.3 29 267-296 402-433 (898)
99 PRK13347 coproporphyrinogen II 69.1 6.1 0.00013 40.1 4.3 65 227-295 148-215 (453)
100 PRK09525 lacZ beta-D-galactosi 68.1 6.9 0.00015 44.0 4.8 41 231-289 374-414 (1027)
101 TIGR00539 hemN_rel putative ox 68.0 9.4 0.0002 37.4 5.2 67 227-296 96-164 (360)
102 COG3250 LacZ Beta-galactosidas 67.9 7.4 0.00016 42.6 4.8 43 231-291 324-366 (808)
103 PRK06294 coproporphyrinogen II 67.3 9.3 0.0002 37.7 5.1 70 222-296 94-167 (370)
104 cd00058 FGF Acidic and basic f 66.0 58 0.0013 27.1 8.9 71 99-175 28-102 (123)
105 PRK10340 ebgA cryptic beta-D-g 65.9 7.5 0.00016 43.7 4.5 41 231-289 358-398 (1021)
106 smart00442 FGF Acidic and basi 63.0 37 0.00081 28.4 7.2 65 113-182 5-70 (126)
107 TIGR01210 conserved hypothetic 62.8 11 0.00023 36.5 4.4 70 224-295 110-181 (313)
108 PRK08599 coproporphyrinogen II 61.9 12 0.00026 36.7 4.7 65 227-296 96-164 (377)
109 PF02638 DUF187: Glycosyl hydr 61.1 18 0.0004 34.9 5.7 55 232-286 23-87 (311)
110 PRK09057 coproporphyrinogen II 59.6 12 0.00026 37.0 4.3 71 221-296 94-167 (380)
111 PRK05660 HemN family oxidoredu 58.6 15 0.00033 36.3 4.7 71 221-295 97-170 (378)
112 TIGR01211 ELP3 histone acetylt 58.4 12 0.00025 39.0 4.1 68 225-295 200-268 (522)
113 PRK09058 coproporphyrinogen II 56.9 13 0.00029 37.6 4.1 65 228-296 160-227 (449)
114 cd00842 MPP_ASMase acid sphing 55.1 28 0.0006 32.7 5.8 77 221-298 139-228 (296)
115 PF14200 RicinB_lectin_2: Rici 55.0 24 0.00051 27.8 4.5 61 67-127 15-79 (105)
116 cd07948 DRE_TIM_HCS Saccharomy 52.7 18 0.00039 34.1 4.0 60 230-291 73-134 (262)
117 PLN03244 alpha-amylase; Provis 52.5 13 0.00029 40.6 3.3 24 266-289 438-461 (872)
118 PF04343 DUF488: Protein of un 51.5 23 0.00049 29.1 4.0 28 271-299 2-29 (122)
119 PF14701 hDGE_amylase: glucano 51.2 46 0.00099 33.8 6.8 61 231-291 25-99 (423)
120 cd03174 DRE_TIM_metallolyase D 50.5 19 0.00041 33.0 3.8 59 231-289 77-135 (265)
121 cd07944 DRE_TIM_HOA_like 4-hyd 50.2 40 0.00086 31.7 5.9 49 229-291 83-131 (266)
122 PRK06582 coproporphyrinogen II 49.7 22 0.00048 35.4 4.3 74 220-296 100-174 (390)
123 PF01212 Beta_elim_lyase: Beta 48.5 14 0.00031 35.2 2.7 59 227-290 104-166 (290)
124 PF01261 AP_endonuc_2: Xylose 48.3 19 0.00041 31.0 3.3 61 231-291 74-134 (213)
125 TIGR01531 glyc_debranch glycog 47.7 37 0.00081 39.4 6.0 60 231-291 135-207 (1464)
126 smart00442 FGF Acidic and basi 47.3 1.5E+02 0.0033 24.7 8.4 51 99-153 32-83 (126)
127 PRK09249 coproporphyrinogen II 47.2 26 0.00055 35.6 4.4 65 228-295 148-214 (453)
128 PRK08207 coproporphyrinogen II 46.4 24 0.00052 36.4 4.1 68 225-295 263-332 (488)
129 TIGR01305 GMP_reduct_1 guanosi 46.0 58 0.0013 32.1 6.4 60 229-288 159-218 (343)
130 COG0399 WecE Predicted pyridox 45.3 24 0.00053 35.2 3.8 41 270-311 137-177 (374)
131 TIGR00538 hemN oxygen-independ 45.3 24 0.00052 35.7 3.9 65 227-295 147-214 (455)
132 PF04055 Radical_SAM: Radical 45.1 46 0.001 27.0 5.0 65 228-295 87-153 (166)
133 TIGR00433 bioB biotin syntheta 44.9 41 0.00088 31.6 5.1 56 228-287 120-176 (296)
134 TIGR03471 HpnJ hopanoid biosyn 44.3 31 0.00067 35.0 4.5 64 229-296 285-350 (472)
135 TIGR00542 hxl6Piso_put hexulos 43.1 45 0.00098 31.0 5.1 59 231-291 97-155 (279)
136 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.5 56 0.0012 30.8 5.6 49 229-291 92-140 (275)
137 PRK08898 coproporphyrinogen II 42.4 29 0.00064 34.5 3.9 67 227-296 118-185 (394)
138 PRK13210 putative L-xylulose 5 42.3 42 0.0009 31.0 4.7 58 232-291 98-155 (284)
139 cd07939 DRE_TIM_NifV Streptomy 41.7 29 0.00063 32.3 3.5 58 230-289 71-130 (259)
140 cd07938 DRE_TIM_HMGL 3-hydroxy 40.4 37 0.00081 32.1 4.1 60 230-291 75-136 (274)
141 PRK08195 4-hyroxy-2-oxovalerat 40.2 71 0.0015 31.3 6.1 48 230-291 90-137 (337)
142 TIGR03217 4OH_2_O_val_ald 4-hy 39.3 77 0.0017 31.0 6.2 48 230-291 89-136 (333)
143 PRK13209 L-xylulose 5-phosphat 38.6 44 0.00095 31.0 4.3 59 231-291 102-160 (283)
144 PF01041 DegT_DnrJ_EryC1: DegT 38.3 29 0.00062 33.8 3.1 38 268-306 126-163 (363)
145 COG3280 TreY Maltooligosyl tre 37.9 44 0.00095 36.4 4.4 56 233-290 24-89 (889)
146 PRK05692 hydroxymethylglutaryl 37.7 41 0.0009 32.1 4.0 59 230-290 81-141 (287)
147 PRK09997 hydroxypyruvate isome 36.8 64 0.0014 29.6 5.0 58 232-291 89-146 (258)
148 TIGR02090 LEU1_arch isopropylm 36.8 39 0.00085 33.3 3.7 59 230-290 73-133 (363)
149 PF13378 MR_MLE_C: Enolase C-t 36.6 1.1E+02 0.0023 24.2 5.7 47 228-287 4-51 (111)
150 PRK05301 pyrroloquinoline quin 36.6 88 0.0019 30.6 6.2 22 229-250 102-123 (378)
151 TIGR03234 OH-pyruv-isom hydrox 36.3 1E+02 0.0022 28.1 6.3 57 233-291 89-145 (254)
152 COG1692 Calcineurin-like phosp 36.0 66 0.0014 30.5 4.8 29 263-291 124-152 (266)
153 COG3623 SgaU Putative L-xylulo 35.9 34 0.00075 32.2 2.9 22 265-286 92-113 (287)
154 PF01791 DeoC: DeoC/LacD famil 35.4 31 0.00067 31.6 2.6 52 232-288 80-131 (236)
155 PLN02607 1-aminocyclopropane-1 35.0 35 0.00075 34.5 3.1 25 267-291 218-242 (447)
156 cd02742 GH20_hexosaminidase Be 34.8 98 0.0021 29.6 6.1 65 227-296 11-97 (303)
157 TIGR02109 PQQ_syn_pqqE coenzym 34.0 1.1E+02 0.0024 29.6 6.4 18 268-285 159-176 (358)
158 PRK13397 3-deoxy-7-phosphohept 33.7 1.4E+02 0.0031 28.1 6.8 49 237-291 38-88 (250)
159 PF10566 Glyco_hydro_97: Glyco 33.6 96 0.0021 29.6 5.7 49 231-291 109-157 (273)
160 PF15632 ATPgrasp_Ter: ATP-gra 33.4 44 0.00096 32.7 3.5 29 261-291 47-75 (329)
161 PRK05093 argD bifunctional N-s 33.4 38 0.00082 33.3 3.1 23 267-289 203-225 (403)
162 PRK09440 avtA valine--pyruvate 33.2 42 0.0009 33.0 3.3 24 267-290 197-220 (416)
163 TIGR02026 BchE magnesium-proto 32.6 56 0.0012 33.5 4.2 63 230-296 286-350 (497)
164 PRK11858 aksA trans-homoaconit 32.2 55 0.0012 32.5 4.0 58 230-289 77-136 (378)
165 PF00155 Aminotran_1_2: Aminot 32.2 46 0.001 31.7 3.4 25 267-291 166-190 (363)
166 PF01229 Glyco_hydro_39: Glyco 32.1 88 0.0019 32.0 5.6 70 214-294 29-108 (486)
167 cd07945 DRE_TIM_CMS Leptospira 31.9 48 0.001 31.5 3.4 59 231-291 77-137 (280)
168 cd00617 Tnase_like Tryptophana 31.9 44 0.00096 33.8 3.3 25 267-291 171-195 (431)
169 PRK13237 tyrosine phenol-lyase 31.8 43 0.00094 34.4 3.2 28 267-295 196-223 (460)
170 smart00729 Elp3 Elongator prot 31.7 94 0.002 26.4 5.0 59 227-287 96-155 (216)
171 TIGR02660 nifV_homocitr homoci 31.3 49 0.0011 32.6 3.4 58 230-289 74-133 (365)
172 PLN02450 1-aminocyclopropane-1 31.1 43 0.00092 34.0 3.1 24 267-290 209-232 (468)
173 cd00958 DhnA Class I fructose- 30.9 53 0.0011 29.8 3.4 50 234-291 82-131 (235)
174 PLN02746 hydroxymethylglutaryl 30.9 59 0.0013 32.1 3.9 59 230-290 123-183 (347)
175 cd06570 GH20_chitobiase-like_1 30.7 1.9E+02 0.0041 28.0 7.3 67 227-297 13-94 (311)
176 TIGR03539 DapC_actino succinyl 30.6 44 0.00095 32.2 2.9 24 267-290 160-183 (357)
177 PRK00125 pyrF orotidine 5'-pho 30.4 52 0.0011 31.4 3.3 25 267-291 71-95 (278)
178 PRK08175 aminotransferase; Val 30.3 46 0.001 32.5 3.1 24 267-290 182-205 (395)
179 PRK05942 aspartate aminotransf 30.2 44 0.00094 32.7 2.9 24 267-290 188-211 (394)
180 PRK09389 (R)-citramalate synth 29.6 61 0.0013 33.4 3.9 60 231-290 76-135 (488)
181 PF00728 Glyco_hydro_20: Glyco 29.6 75 0.0016 30.4 4.4 67 227-297 13-99 (351)
182 cd00609 AAT_like Aspartate ami 29.4 50 0.0011 30.7 3.0 25 267-291 150-174 (350)
183 PRK04302 triosephosphate isome 29.0 1.7E+02 0.0037 26.5 6.4 52 228-291 72-123 (223)
184 PRK07865 N-succinyldiaminopime 28.9 50 0.0011 31.8 3.0 25 267-291 166-190 (364)
185 PRK07094 biotin synthase; Prov 28.9 79 0.0017 30.2 4.4 56 229-288 127-184 (323)
186 PRK01278 argD acetylornithine 28.9 51 0.0011 32.1 3.1 23 267-289 194-216 (389)
187 PLN02376 1-aminocyclopropane-1 28.8 50 0.0011 33.9 3.1 23 267-289 217-239 (496)
188 PRK05957 aspartate aminotransf 28.7 50 0.0011 32.3 3.0 25 267-291 178-202 (389)
189 TIGR03849 arch_ComA phosphosul 28.3 1.5E+02 0.0032 27.8 5.8 49 231-291 74-122 (237)
190 PRK07681 aspartate aminotransf 28.2 50 0.0011 32.4 2.9 25 267-291 184-208 (399)
191 PRK09856 fructoselysine 3-epim 28.2 96 0.0021 28.5 4.7 58 232-291 94-151 (275)
192 PLN02368 alanine transaminase 28.1 53 0.0012 32.8 3.1 23 267-289 228-250 (407)
193 COG1441 MenC O-succinylbenzoat 27.9 48 0.001 31.2 2.5 51 225-288 213-263 (321)
194 cd06564 GH20_DspB_LnbB-like Gl 27.9 1.4E+02 0.0031 28.7 6.0 28 267-296 80-107 (326)
195 TIGR02618 tyr_phenol_ly tyrosi 27.8 56 0.0012 33.5 3.2 25 267-291 189-213 (450)
196 cd07943 DRE_TIM_HOA 4-hydroxy- 27.8 1.5E+02 0.0033 27.5 6.0 45 231-289 88-132 (263)
197 COG1649 Uncharacterized protei 27.8 1E+02 0.0023 31.2 5.1 55 232-286 68-132 (418)
198 TIGR03235 DNA_S_dndA cysteine 27.6 85 0.0018 29.9 4.4 26 266-291 152-177 (353)
199 cd06565 GH20_GcnA-like Glycosy 27.5 1.9E+02 0.0041 27.7 6.6 55 233-291 22-82 (301)
200 smart00633 Glyco_10 Glycosyl h 27.4 49 0.0011 30.6 2.6 23 267-291 14-36 (254)
201 TIGR01140 L_thr_O3P_dcar L-thr 27.4 56 0.0012 31.1 3.0 25 267-291 143-167 (330)
202 PRK09265 aminotransferase AlaT 27.2 56 0.0012 32.1 3.1 23 267-289 186-208 (404)
203 PF03851 UvdE: UV-endonuclease 27.2 35 0.00077 32.6 1.6 21 271-291 192-212 (275)
204 TIGR03128 RuMP_HxlA 3-hexulose 27.2 67 0.0015 28.4 3.3 44 233-291 68-111 (206)
205 cd06568 GH20_SpHex_like A subg 27.2 1.7E+02 0.0037 28.5 6.3 28 267-296 73-100 (329)
206 PRK08960 hypothetical protein; 27.1 60 0.0013 31.6 3.2 23 267-289 183-205 (387)
207 PRK08247 cystathionine gamma-s 27.1 75 0.0016 31.0 3.9 30 259-290 145-174 (366)
208 PRK08354 putative aminotransfe 27.0 53 0.0011 31.0 2.8 25 267-291 135-159 (311)
209 PRK07807 inosine 5-monophospha 27.0 1.9E+02 0.0041 29.8 6.9 62 229-290 277-338 (479)
210 PRK09148 aminotransferase; Val 26.9 57 0.0012 32.1 3.1 25 267-291 183-207 (405)
211 TIGR03540 DapC_direct LL-diami 26.8 53 0.0011 31.8 2.8 25 267-291 182-206 (383)
212 COG0293 FtsJ 23S rRNA methylas 26.5 62 0.0014 29.6 3.0 23 273-296 32-58 (205)
213 PRK06358 threonine-phosphate d 26.4 60 0.0013 31.3 3.1 23 267-289 159-181 (354)
214 PRK07590 L,L-diaminopimelate a 26.4 57 0.0012 32.1 3.0 23 267-289 194-216 (409)
215 PRK00278 trpC indole-3-glycero 26.4 71 0.0015 30.0 3.4 23 269-291 147-169 (260)
216 PLN00175 aminotransferase fami 26.3 59 0.0013 32.3 3.0 25 267-291 205-229 (413)
217 cd06454 KBL_like KBL_like; thi 26.3 55 0.0012 30.8 2.7 25 267-291 147-171 (349)
218 PRK05839 hypothetical protein; 26.2 59 0.0013 31.6 3.0 24 267-290 173-196 (374)
219 PLN02721 threonine aldolase 26.1 63 0.0014 30.5 3.1 23 267-289 156-178 (353)
220 PF04273 DUF442: Putative phos 26.0 52 0.0011 26.9 2.2 19 227-245 13-31 (110)
221 PRK10076 pyruvate formate lyas 25.9 2.2E+02 0.0048 25.9 6.5 21 267-287 191-211 (213)
222 PF10566 Glyco_hydro_97: Glyco 25.9 1.8E+02 0.0038 27.8 6.0 59 233-291 37-95 (273)
223 cd07941 DRE_TIM_LeuA3 Desulfob 25.7 87 0.0019 29.5 3.9 56 231-288 81-138 (273)
224 PRK08068 transaminase; Reviewe 25.7 58 0.0013 31.7 2.9 25 267-291 185-209 (389)
225 PRK07550 hypothetical protein; 25.7 60 0.0013 31.5 2.9 25 267-291 181-205 (386)
226 cd00610 OAT_like Acetyl ornith 25.6 63 0.0014 31.4 3.1 24 267-290 210-233 (413)
227 COG1168 MalY Bifunctional PLP- 25.6 62 0.0013 32.4 2.9 26 267-292 176-202 (388)
228 TIGR02017 hutG_amidohyd N-form 25.6 76 0.0016 29.9 3.5 26 269-295 125-151 (263)
229 PLN00145 tyrosine/nicotianamin 25.5 63 0.0014 32.3 3.1 24 267-290 208-231 (430)
230 TIGR02617 tnaA_trp_ase tryptop 25.3 70 0.0015 32.9 3.4 56 228-290 166-225 (467)
231 PRK07324 transaminase; Validat 25.3 65 0.0014 31.4 3.1 23 267-289 171-193 (373)
232 PRK09147 succinyldiaminopimela 25.3 63 0.0014 31.6 3.0 24 267-290 184-207 (396)
233 PF02679 ComA: (2R)-phospho-3- 25.3 1.2E+02 0.0025 28.6 4.6 49 231-291 87-135 (244)
234 PRK06425 histidinol-phosphate 25.2 68 0.0015 30.6 3.2 24 267-290 140-163 (332)
235 PRK06207 aspartate aminotransf 25.1 65 0.0014 31.8 3.1 25 267-291 196-220 (405)
236 KOG0256 1-aminocyclopropane-1- 25.1 83 0.0018 32.0 3.7 31 259-289 235-266 (471)
237 PRK07366 succinyldiaminopimela 25.1 63 0.0014 31.4 3.0 23 267-289 183-205 (388)
238 PRK13238 tnaA tryptophanase/L- 24.9 68 0.0015 32.7 3.3 23 267-289 196-218 (460)
239 TIGR01302 IMP_dehydrog inosine 24.9 2.4E+02 0.0052 28.7 7.2 59 228-288 273-333 (450)
240 PRK08636 aspartate aminotransf 24.9 67 0.0015 31.5 3.2 25 267-291 193-217 (403)
241 PRK03244 argD acetylornithine 24.8 66 0.0014 31.4 3.1 23 267-289 202-224 (398)
242 PRK02936 argD acetylornithine 24.8 67 0.0015 31.0 3.1 23 267-289 186-208 (377)
243 PRK08912 hypothetical protein; 24.7 59 0.0013 31.6 2.7 24 267-290 177-200 (387)
244 PRK06348 aspartate aminotransf 24.7 68 0.0015 31.2 3.1 25 267-291 180-204 (384)
245 PRK06108 aspartate aminotransf 24.7 69 0.0015 30.8 3.1 24 267-290 176-199 (382)
246 PRK09082 methionine aminotrans 24.7 61 0.0013 31.6 2.8 24 267-290 181-204 (386)
247 PLN02187 rooty/superroot1 24.7 66 0.0014 32.6 3.1 23 267-289 222-244 (462)
248 cd01299 Met_dep_hydrolase_A Me 24.7 2.5E+02 0.0055 26.5 7.0 56 232-288 124-179 (342)
249 PRK02627 acetylornithine amino 24.6 68 0.0015 31.1 3.1 23 267-289 201-223 (396)
250 PRK12381 bifunctional succinyl 24.6 63 0.0014 31.9 2.9 23 267-289 202-224 (406)
251 PRK08056 threonine-phosphate d 24.5 66 0.0014 31.0 2.9 24 267-290 160-183 (356)
252 COG1167 ARO8 Transcriptional r 24.3 2E+02 0.0042 29.2 6.4 58 232-289 191-267 (459)
253 TIGR01324 cysta_beta_ly_B cyst 24.3 99 0.0022 30.5 4.2 35 266-300 149-183 (377)
254 PRK07309 aromatic amino acid a 24.2 72 0.0016 31.2 3.2 25 267-291 184-208 (391)
255 TIGR02536 eut_hyp ethanolamine 24.2 1.4E+02 0.0029 27.4 4.7 47 224-287 160-206 (207)
256 TIGR03538 DapC_gpp succinyldia 24.2 58 0.0013 31.8 2.5 25 267-291 183-207 (393)
257 PRK05664 threonine-phosphate d 24.2 75 0.0016 30.3 3.2 25 267-291 142-166 (330)
258 PF15647 Tox-REase-3: Restrict 24.1 60 0.0013 26.4 2.1 21 270-290 88-108 (109)
259 PRK05939 hypothetical protein; 24.1 1E+02 0.0022 30.6 4.3 33 266-299 145-178 (397)
260 PRK07777 aminotransferase; Val 24.1 70 0.0015 31.1 3.1 25 267-291 177-201 (387)
261 PRK12858 tagatose 1,6-diphosph 24.0 1.4E+02 0.003 29.4 5.1 51 234-289 112-163 (340)
262 TIGR03542 DAPAT_plant LL-diami 23.9 68 0.0015 31.5 3.0 25 267-291 191-215 (402)
263 PRK09257 aromatic amino acid a 23.9 70 0.0015 31.3 3.0 24 267-290 190-213 (396)
264 PF07555 NAGidase: beta-N-acet 23.7 1.4E+02 0.003 29.0 4.9 54 232-291 19-78 (306)
265 TIGR00629 uvde UV damage endon 23.5 60 0.0013 31.6 2.4 21 271-291 201-221 (312)
266 PRK09276 LL-diaminopimelate am 23.4 73 0.0016 30.9 3.0 25 267-291 184-208 (385)
267 cd00019 AP2Ec AP endonuclease 23.3 1E+02 0.0022 28.5 3.9 57 232-291 89-145 (279)
268 PF14542 Acetyltransf_CG: GCN5 23.3 89 0.0019 23.7 2.9 21 267-287 40-60 (78)
269 TIGR02867 spore_II_P stage II 23.2 1.8E+02 0.0038 26.4 5.2 50 235-292 41-92 (196)
270 PLN00143 tyrosine/nicotianamin 23.1 80 0.0017 31.2 3.3 24 267-290 188-211 (409)
271 PRK00854 rocD ornithine--oxo-a 23.0 75 0.0016 31.0 3.1 23 268-290 207-229 (401)
272 PRK06225 aspartate aminotransf 23.0 75 0.0016 30.8 3.0 23 267-289 175-197 (380)
273 PTZ00377 alanine aminotransfer 22.9 74 0.0016 32.3 3.1 23 267-289 236-258 (481)
274 cd06502 TA_like Low-specificit 22.9 75 0.0016 29.8 3.0 23 267-289 144-166 (338)
275 COG3422 Uncharacterized conser 22.9 1.2E+02 0.0025 22.3 3.2 25 146-170 4-28 (59)
276 PRK04161 tagatose 1,6-diphosph 22.9 1.8E+02 0.0038 28.7 5.4 56 231-291 110-166 (329)
277 PF13200 DUF4015: Putative gly 22.9 1.2E+02 0.0026 29.6 4.4 56 231-289 16-81 (316)
278 cd00245 Glm_e Coenzyme B12-dep 22.8 1.1E+02 0.0024 31.1 4.2 54 236-291 116-172 (428)
279 COG2008 GLY1 Threonine aldolas 22.8 75 0.0016 31.4 2.9 22 267-288 148-169 (342)
280 PF00202 Aminotran_3: Aminotra 22.7 66 0.0014 31.1 2.6 23 267-289 196-218 (339)
281 PRK08117 4-aminobutyrate amino 22.7 75 0.0016 31.7 3.0 23 267-289 226-248 (433)
282 TIGR01212 radical SAM protein, 22.7 1E+02 0.0022 29.5 3.9 67 226-295 118-189 (302)
283 PLN00144 acetylornithine trans 22.7 77 0.0017 31.2 3.1 21 268-288 187-207 (382)
284 TIGR01264 tyr_amTase_E tyrosin 22.7 78 0.0017 30.9 3.1 24 267-290 186-209 (401)
285 PTZ00433 tyrosine aminotransfe 22.7 76 0.0017 31.3 3.1 25 267-291 195-219 (412)
286 PRK07337 aminotransferase; Val 22.6 82 0.0018 30.6 3.2 22 267-288 181-202 (388)
287 cd07947 DRE_TIM_Re_CS Clostrid 22.5 1E+02 0.0022 29.4 3.7 59 230-290 76-136 (279)
288 TIGR03537 DapC succinyldiamino 22.5 77 0.0017 30.3 3.0 25 267-291 154-178 (350)
289 PRK06939 2-amino-3-ketobutyrat 22.3 54 0.0012 31.5 1.9 25 267-291 189-213 (397)
290 cd00615 Orn_deC_like Ornithine 22.2 67 0.0014 30.1 2.4 24 266-289 167-190 (294)
291 PRK07709 fructose-bisphosphate 22.1 3.2E+02 0.0069 26.2 7.0 57 231-298 90-146 (285)
292 TIGR01232 lacD tagatose 1,6-di 22.1 1.7E+02 0.0036 28.8 5.1 55 232-291 110-165 (325)
293 PRK06290 aspartate aminotransf 22.1 75 0.0016 31.6 2.9 25 267-291 197-221 (410)
294 TIGR02127 pyrF_sub2 orotidine 22.1 94 0.002 29.4 3.4 24 267-290 71-94 (261)
295 PF13899 Thioredoxin_7: Thiore 21.9 69 0.0015 23.9 2.0 22 270-291 5-26 (82)
296 PRK06855 aminotransferase; Val 21.7 82 0.0018 31.5 3.1 23 267-289 189-211 (433)
297 PRK09264 diaminobutyrate--2-ox 21.7 83 0.0018 31.5 3.1 23 267-289 217-239 (425)
298 PRK07682 hypothetical protein; 21.7 79 0.0017 30.5 2.9 25 267-291 172-196 (378)
299 cd07940 DRE_TIM_IPMS 2-isoprop 21.6 95 0.0021 29.0 3.3 56 231-288 72-133 (268)
300 cd06562 GH20_HexA_HexB-like Be 21.5 2.5E+02 0.0053 27.5 6.3 29 267-297 68-96 (348)
301 PRK08363 alanine aminotransfer 21.4 73 0.0016 31.1 2.6 24 267-290 184-207 (398)
302 PRK04073 rocD ornithine--oxo-a 21.4 85 0.0018 30.8 3.1 24 268-291 206-229 (396)
303 PLN02681 proline dehydrogenase 21.0 93 0.002 31.9 3.3 25 267-291 218-242 (455)
304 PLN02656 tyrosine transaminase 21.0 88 0.0019 30.8 3.1 25 267-291 187-211 (409)
305 cd00947 TBP_aldolase_IIB Tagat 21.0 3.4E+02 0.0073 25.9 6.9 65 224-299 75-139 (276)
306 TIGR01265 tyr_nico_aTase tyros 21.0 88 0.0019 30.7 3.1 25 267-291 187-211 (403)
307 PRK15407 lipopolysaccharide bi 20.9 90 0.002 31.5 3.2 36 269-305 173-208 (438)
308 PRK06256 biotin synthase; Vali 20.9 1.1E+02 0.0023 29.4 3.6 57 228-288 149-206 (336)
309 PRK07568 aspartate aminotransf 20.8 87 0.0019 30.4 3.0 25 267-291 180-204 (397)
310 PRK07998 gatY putative fructos 20.6 3.7E+02 0.0079 25.8 7.1 57 231-298 87-143 (283)
311 KOG3770 Acid sphingomyelinase 20.5 2.2E+02 0.0048 30.1 5.9 76 220-296 284-371 (577)
312 PRK12399 tagatose 1,6-diphosph 20.4 2.2E+02 0.0048 27.9 5.5 54 233-291 110-164 (324)
313 PRK07683 aminotransferase A; V 20.3 88 0.0019 30.5 2.9 25 267-291 179-203 (387)
314 PF00682 HMGL-like: HMGL-like 20.3 84 0.0018 28.4 2.6 60 230-289 65-128 (237)
315 PRK13355 bifunctional HTH-doma 20.3 88 0.0019 32.1 3.0 24 267-290 299-322 (517)
316 TIGR00858 bioF 8-amino-7-oxono 20.3 85 0.0018 29.6 2.7 24 268-291 162-185 (360)
317 PRK08361 aspartate aminotransf 20.2 89 0.0019 30.4 2.9 25 267-291 184-208 (391)
318 PRK06959 putative threonine-ph 20.2 2.5E+02 0.0055 26.9 6.0 54 237-290 110-171 (339)
319 PRK05096 guanosine 5'-monophos 20.1 3.4E+02 0.0074 26.9 6.8 60 229-288 160-219 (346)
320 cd01494 AAT_I Aspartate aminot 20.1 92 0.002 25.3 2.6 21 271-291 111-131 (170)
321 COG3934 Endo-beta-mannanase [C 20.0 66 0.0014 33.3 2.0 56 231-291 29-89 (587)
No 1
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.72 E-value=3.4e-17 Score=135.31 Aligned_cols=114 Identities=28% Similarity=0.391 Sum_probs=101.5
Q ss_pred cceeeeeeeecccccccCCCchHHHhhhcccccccccEEeeeCCCcEEEEEcCCcEEEEecCCCCceEEEeccCCCCCcc
Q 020317 67 TQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSET 146 (327)
Q Consensus 67 ~~v~l~e~~~gkyv~ae~gg~~~l~Anr~~~~hWEtF~~~~ite~d~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we~ 146 (327)
.++.|++. +|+||+++.+|. .+.|++...+.||+|++++.+++.++||+.||+||+++. . +.+.|+++ ++++|.
T Consensus 2 p~v~Lrs~-~gkyl~~~~~g~-~v~a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~-~--g~l~~~~~-~~~~e~ 75 (119)
T cd00257 2 PQVVLRSV-NGRYLSAEAGGD-KVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSADS-D--GGVQLEGH-PNADCR 75 (119)
T ss_pred cEEEEEEc-CCCEEEEeccCC-EEEEcCccCCCceEEEEEECCCCeEEEEECCCcEEEEEC-C--CCEEecCC-CCCCcE
Confidence 46889987 999999999873 688999998899999999988888999999999999987 4 46899999 999999
Q ss_pred eEEEEccCCCceEEEecCCCcEEEecccceeeecccCCCCCC
Q 020317 147 FEIVRNSNDLSRVRIKAPNGFFLQAKTEELVTADYEGATSWG 188 (327)
Q Consensus 147 F~l~~~~~~~~~~~Lra~ng~yv~a~~~~~L~A~~~~~~~W~ 188 (327)
|+++.++++ +++||+.||+||+++.++.|.|+....+.|+
T Consensus 76 F~~e~~~~g--~~al~~~~G~yl~~~~~g~l~~~~~~~~~~e 115 (119)
T cd00257 76 FTLEFHGDG--KWALRAENGRYLGGDGSGTLKASSETVGPDE 115 (119)
T ss_pred EEEEECCCC--eEEEEcCCCCEEeecCCCeEEEecCCCCccc
Confidence 999999764 6999999999999998889999998877664
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=7.2e-17 Score=160.31 Aligned_cols=105 Identities=30% Similarity=0.503 Sum_probs=92.8
Q ss_pred CcceeEEEeccCCCCchhhhhh-cccccCCHHHHHHHHHcCCCEEEeccccccccCCCC-CCCCCc--chHHHHHHHHHH
Q 020317 202 RMQGEFQVTNGYGPQKAPQVMR-HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVG--GSLRALDNAFTW 277 (327)
Q Consensus 202 ~l~~E~~~~~~~G~~~a~~~l~-~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~-~~p~~~--~~~~~ld~~v~w 277 (327)
.+.++..++..+|...+...++ ||.+++|+++|.+|+++|||+||||++||.+ ...+ .+|++. .++.+||++|+|
T Consensus 46 ~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~ 124 (407)
T COG2730 46 QLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINW 124 (407)
T ss_pred eeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHH
Confidence 4577778888888888899999 9999999999999999999999999999987 3322 578876 477799999999
Q ss_pred HHHCCCcEEEecCCCCCCCCCCCCCCCCCCC
Q 020317 278 AGYAFFPVPSDITISVTTSQDLTIMGGPVHN 308 (327)
Q Consensus 278 a~~~gl~VilDlH~~~PG~qn~~~~sG~~~~ 308 (327)
|+++||+|+||+|+ +||++++.+++|....
T Consensus 125 a~~~gi~V~iD~H~-~~~~~~~~~~s~~~~~ 154 (407)
T COG2730 125 AKKLGIYVLIDLHG-YPGGNNGHEHSGYTSD 154 (407)
T ss_pred HHhcCeeEEEEecc-cCCCCCCcCccccccc
Confidence 99999999999999 9999999999996544
No 3
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.61 E-value=1.6e-15 Score=124.53 Aligned_cols=104 Identities=32% Similarity=0.456 Sum_probs=89.5
Q ss_pred ccccccCCCchHHHhhhcccccccccEEeeeCCCc-EEEEEcCCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCC
Q 020317 78 KYLCAENGGGTIVVANRTSASGWETFKLWRINETN-FHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDL 156 (327)
Q Consensus 78 kyv~ae~gg~~~l~Anr~~~~hWEtF~~~~ite~d-~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~ 156 (327)
+|++++..+. .+.||+.+.++||+|+|+...++. ++||+.|||||+++. .+.|.|++.+++++++|+|++++
T Consensus 3 ~~~~~~k~~~-~l~an~~~~~~~e~f~le~~~~~~~v~lrs~~GkYls~~~---~G~v~~~~~~~~~~~~F~i~~~~--- 75 (111)
T PF06268_consen 3 GYLVSEKFGA-HLNANRASLSDWETFQLEFDDGSYKVALRSHNGKYLSVDS---DGSVVADSETPGPDEFFEIEWHG--- 75 (111)
T ss_dssp EEEEETTCTC-BEEEEESSSSCGGSEEEEEETTEEEEEEECTTSEEEEEET---TSEEEEEESSSSGGGCBEEEEET---
T ss_pred cEEEEEEcCC-EEECChhcCcccEEEEEEEECCCCEEEEEcCCCCEEEEcC---CCeEEecCCCCCCCcEEEEEECC---
Confidence 4555555544 588999888999999999766644 689999999999987 56799999999999999999995
Q ss_pred ceEEEecCCCcEEEecccceeeecccCCCCCC
Q 020317 157 SRVRIKAPNGFFLQAKTEELVTADYEGATSWG 188 (327)
Q Consensus 157 ~~~~Lra~ng~yv~a~~~~~L~A~~~~~~~W~ 188 (327)
+.+.++++||+||++..++.|.|+...++.|+
T Consensus 76 ~~~~~~~~nGkYl~~~~~g~l~a~~~~~~~~e 107 (111)
T PF06268_consen 76 GKVALRASNGKYLSAGPNGQLKANATSPGKDE 107 (111)
T ss_dssp TEEEEECTTSCEEEEETTTEEEEEESSSSGGG
T ss_pred CEEEEECCCCCEEeeCCCCeEEEcCCCCCcce
Confidence 68999999999999999999999999888764
No 4
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.29 E-value=4e-12 Score=117.81 Aligned_cols=81 Identities=30% Similarity=0.359 Sum_probs=61.2
Q ss_pred hhhhhh-cccc-cCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCCCCCC
Q 020317 218 APQVMR-HWST-YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTT 295 (327)
Q Consensus 218 a~~~l~-~~~~-~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~~~PG 295 (327)
..+-++ ||.+ +++++||+.++++|+|+||||+.|..+..+.+.-.+....+++||++|++|+++||+||||+|. .|+
T Consensus 9 ~~~G~n~~w~~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~-~~~ 87 (281)
T PF00150_consen 9 NWRGFNTHWYNPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN-APG 87 (281)
T ss_dssp EEEEEEETTSGGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE-STT
T ss_pred EeeeeecccCCCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc-Ccc
Confidence 344555 6654 3899999999999999999999986554322111133458999999999999999999999999 877
Q ss_pred CCCC
Q 020317 296 SQDL 299 (327)
Q Consensus 296 ~qn~ 299 (327)
..+.
T Consensus 88 w~~~ 91 (281)
T PF00150_consen 88 WANG 91 (281)
T ss_dssp CSSS
T ss_pred cccc
Confidence 6443
No 5
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.00 E-value=1.9e-09 Score=88.90 Aligned_cols=72 Identities=15% Similarity=0.303 Sum_probs=63.1
Q ss_pred cEEEEEcCCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEecCCCcEEEecccceeeecccCCCCCC
Q 020317 112 NFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTEELVTADYEGATSWG 188 (327)
Q Consensus 112 d~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra~ng~yv~a~~~~~L~A~~~~~~~W~ 188 (327)
.++||+.||+||+++. +| ..+.|+++.+++||+|+++..++ ++++||+.||+||++...+.|.++.. .+.|+
T Consensus 3 ~v~Lrs~~gkyl~~~~-~g-~~v~a~~~~~~~~e~F~l~~~~~--g~v~Lrs~~G~yls~~~~g~l~~~~~-~~~~e 74 (119)
T cd00257 3 QVVLRSVNGRYLSAEA-GG-DKVDANRDSLKGDETFTLEFDNT--GKYALRSHDGKYLSADSDGGVQLEGH-PNADC 74 (119)
T ss_pred EEEEEEcCCCEEEEec-cC-CEEEEcCccCCCceEEEEEECCC--CeEEEEECCCcEEEEECCCCEEecCC-CCCCc
Confidence 4789999999999998 53 48999999999999999999875 47999999999999998788999887 76654
No 6
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.60 E-value=5.5e-08 Score=79.75 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=65.1
Q ss_pred CcceeeeeeeecccccccCCCchHHHhhhcccccccccEEeeeCCCcEEEEEcCCcEEEEecCCCCceEEEeccCCCCCc
Q 020317 66 GTQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSE 145 (327)
Q Consensus 66 g~~v~l~e~~~gkyv~ae~gg~~~l~Anr~~~~hWEtF~~~~ite~d~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we 145 (327)
+..+.|++ ++|+|++++..|. +++++...+.++.|+++.. .+.+.+|+.||+||++.. ++.|.|+++++++||
T Consensus 35 ~~~v~lrs-~~GkYls~~~~G~--v~~~~~~~~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~---~g~l~a~~~~~~~~e 107 (111)
T PF06268_consen 35 SYKVALRS-HNGKYLSVDSDGS--VVADSETPGPDEFFEIEWH-GGKVALRASNGKYLSAGP---NGQLKANATSPGKDE 107 (111)
T ss_dssp EEEEEEEC-TTSEEEEEETTSE--EEEEESSSSGGGCBEEEEE-TTEEEEECTTSCEEEEET---TTEEEEEESSSSGGG
T ss_pred CCEEEEEc-CCCCEEEEcCCCe--EEecCCCCCCCcEEEEEEC-CCEEEEECCCCCEEeeCC---CCeEEEcCCCCCcce
Confidence 35567885 7999999876654 7888887789999999987 556788888999999876 578999999999999
Q ss_pred ceEE
Q 020317 146 TFEI 149 (327)
Q Consensus 146 ~F~l 149 (327)
.|.+
T Consensus 108 lf~~ 111 (111)
T PF06268_consen 108 LFEY 111 (111)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9975
No 7
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.59 E-value=1.7e-07 Score=84.24 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=54.1
Q ss_pred cccccEEeee-CCCcEEEEEcCCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEec-CCCcEEEecccce
Q 020317 99 GWETFKLWRI-NETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEEL 176 (327)
Q Consensus 99 hWEtF~~~~i-te~d~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra-~ng~yv~a~~~~~ 176 (327)
..|.|..+.+ +++.|+||+.+|+|++++. .|.|+|+++++|++|.|+++...+ ..++.+ .|++||++...+-
T Consensus 26 p~qV~va~~v~~~~~iafKs~~GkYLs~Dk---~G~v~a~sdAiGp~E~f~~V~~~~---~~a~~~~~~~~FLs~~~~~~ 99 (191)
T PF06229_consen 26 PRQVWVATRVPGDEKIAFKSGHGKYLSCDK---DGIVSARSDAIGPQEQFEPVFQDG---KPALFSSSNNKFLSVDEEGD 99 (191)
T ss_dssp TTT-EEEEE--SSS-EEEEETTS-BEEE-S---SSBEEE--SS--TTTBEEEE-STT-----EEEE-TTS-BEEE-SSS-
T ss_pred hhHeEEEEEecCCCceEeeccCccEEEEcC---CCcEEEEeecCCCceEEEEEECCC---CeEEEecCCCeEEEEecccC
Confidence 5778999988 7788999999999999998 468999999999999999999874 467777 9999999998666
Q ss_pred eeecccCCCC
Q 020317 177 VTADYEGATS 186 (327)
Q Consensus 177 L~A~~~~~~~ 186 (327)
+.|+....+.
T Consensus 100 i~a~s~~a~~ 109 (191)
T PF06229_consen 100 IRADSKTAGE 109 (191)
T ss_dssp EEE--S---T
T ss_pred eeeccccCCC
Confidence 8888776553
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=98.09 E-value=4.9e-06 Score=83.62 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=53.2
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++|+++|+|++|++|.|-.+. |.+...+...++++.|++|+.|+++||.+|++||+
T Consensus 52 ~y~~y--~eDi~l~~~~G~~~~R~si~Wsri~-p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H 116 (427)
T TIGR03356 52 HYHRY--EEDVALMKELGVDAYRFSIAWPRIF-PEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH 116 (427)
T ss_pred HHHhH--HHHHHHHHHcCCCeEEcccchhhcc-cCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc
Confidence 56666 7999999999999999999876554 22112344458999999999999999999999976
No 9
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=97.88 E-value=1.6e-05 Score=71.55 Aligned_cols=109 Identities=24% Similarity=0.275 Sum_probs=59.0
Q ss_pred eeeEeccCcEEeecCCC------CCCCcCCCCCCCCCCcceeeeeeeecccccccCCCchHHHhhhcccccccccEEeee
Q 020317 35 IKAVNLGGWLVTEGWIK------PSLFDGIPNKDFLDGTQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRI 108 (327)
Q Consensus 35 ~~GVNLGgWlVlE~wi~------pslF~~~~~~~~~dg~~v~l~e~~~gkyv~ae~gg~~~l~Anr~~~~hWEtF~~~~i 108 (327)
+..+.-|.-.+.||=-. ...|-.+.- .....++||+ .+|+||+++.-|. ++|++..++.+|+|+++.
T Consensus 4 i~a~d~G~~t~~ePhd~~~~p~p~qV~va~~v---~~~~~iafKs-~~GkYLs~Dk~G~--v~a~sdAiGp~E~f~~V~- 76 (191)
T PF06229_consen 4 IEALDNGLFTTGEPHDVGEGPDPRQVWVATRV---PGDEKIAFKS-GHGKYLSCDKDGI--VSARSDAIGPQEQFEPVF- 76 (191)
T ss_dssp EEE-TTS-EEE----SSS----TTT-EEEEE-----SSS-EEEEE-TTS-BEEE-SSSB--EEE--SS--TTTBEEEE--
T ss_pred eeeeccCCccccCCCcCCCCCChhHeEEEEEe---cCCCceEeec-cCccEEEEcCCCc--EEEEeecCCCceEEEEEE-
Confidence 33444466666666554 334433211 1245789997 7999999998765 899999999999999987
Q ss_pred CCCcEEEEE-cCCcEEEEecCCCCceEEEeccCCCCCcceEEEEcc
Q 020317 109 NETNFHFRV-FNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNS 153 (327)
Q Consensus 109 te~d~alrs-~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~ 153 (327)
+++..++.+ .|++|++++. . +.+.|+..+++..|.+.|--..
T Consensus 77 ~~~~~a~~~~~~~~FLs~~~-~--~~i~a~s~~a~~~e~~~iR~~~ 119 (191)
T PF06229_consen 77 QDGKPALFSSSNNKFLSVDE-E--GDIRADSKTAGENEMIKIRSDA 119 (191)
T ss_dssp STT--EEEE-TTS-BEEE-S-S--S-EEE--S---TTT--EEEE-S
T ss_pred CCCCeEEEecCCCeEEEEec-c--cCeeeccccCCCCceEEEEEec
Confidence 567888888 7999999988 4 3399999999999998875543
No 10
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.59 E-value=0.00011 Score=74.79 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=53.3
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|++|.|.-+.........-..++++-+++|+.|+++||.+||.||+
T Consensus 69 ~Yhry--~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H 134 (474)
T PRK09852 69 FYHRY--KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH 134 (474)
T ss_pred hhhhh--HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 66667 7999999999999999999987654211111123458999999999999999999999986
No 11
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=97.46 E-value=0.00014 Score=71.60 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec--CCCCCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI--TISVTT 295 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl--H~~~PG 295 (327)
++|++.|+++|+|+|||..-.|....|.+ ..| .|..||++|+.|+++||+|||-+ +. +|.
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~y---dF~~lD~~l~~a~~~Gi~viL~~~~~~-~P~ 74 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQY---DFSWLDRVLDLAAKHGIKVILGTPTAA-PPA 74 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTT-S-H
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCC-Cee---ecHHHHHHHHHHHhccCeEEEEecccc-ccc
Confidence 78999999999999999665565433321 122 58999999999999999999977 44 553
No 12
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.29 E-value=0.00057 Score=69.76 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=53.2
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++|+++|+|+.|++|.|--+.........-..++++-+++|+.++++||..||.||+
T Consensus 67 ~Yhry--~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H 132 (477)
T PRK15014 67 FYGHY--KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH 132 (477)
T ss_pred ccccc--HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 77777 8999999999999999999986553211111223458999999999999999999999965
No 13
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.0029 Score=63.92 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=52.2
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccC-CCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASD-PTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~-~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+-|.|--++. +...+| -+.+++.-+++++-|.++||.-++.||+
T Consensus 57 ~YhrY--keDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~-N~~gl~fY~~l~del~~~gIep~vTL~H 122 (460)
T COG2723 57 FYHRY--KEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEV-NEKGLRFYDRLFDELKARGIEPFVTLYH 122 (460)
T ss_pred hhhhh--HHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCc-CHHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 55556 79999999999999999999754432 221122 2348999999999999999999999998
No 14
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.69 E-value=0.0029 Score=61.69 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=37.3
Q ss_pred CHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.++-|+.+++.|+|.|||=+ | .+|. ..- ...+++..++.+.|+++||+|+||+|=
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv--w--v~P~--~~g-~~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV--W--VNPY--DGG-YNDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-----SS-T--TTT-TTSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CCCHHHHHHhcCCCeEEEEe--c--cCCc--ccc-cCCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 35778899999999999987 3 2321 111 136899999999999999999999996
No 15
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.54 E-value=0.0051 Score=62.68 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=53.9
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+-|.|--+. |....+....++++=+++|+.|+++||.-+|.||+
T Consensus 52 ~Y~ry--~eDi~L~~~lG~~~yRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H 116 (469)
T PRK13511 52 FYHRY--PEDLKLAEEFGVNGIRISIAWSRIF-PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH 116 (469)
T ss_pred hhhhh--HHHHHHHHHhCCCEEEeeccHhhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 67777 8999999999999999999876543 22223344468999999999999999999999997
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.51 E-value=0.0028 Score=64.25 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=49.1
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCC-CCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~-~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+.|.|--+. |.+ .......++++-+++|+-++++||..|+.||+
T Consensus 56 ~y~~y--~eDi~l~~~lg~~~yRfsi~W~Ri~-P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H 121 (455)
T PF00232_consen 56 HYHRY--KEDIALMKELGVNAYRFSISWSRIF-PDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH 121 (455)
T ss_dssp HHHHH--HHHHHHHHHHT-SEEEEE--HHHHS-TTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred chhhh--hHHHHHHHhhccceeeeecchhhee-ecccccccCHhHhhhhHHHHHHHHhhccceeeeeee
Confidence 66666 7999999999999999999886553 322 22333458999999999999999999999997
No 17
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.0082 Score=57.48 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCC--CCCCCCCcc--hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDP--TPPAPYVGG--SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~--~~~~p~~~~--~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
++-++.++.+|+|.|||-+ +.+| ....+|-.+ .++..-.+-+.|++.||||+||.|=
T Consensus 66 qD~~~iLK~~GvNyvRlRv----wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV----WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE----ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 5677888999999999987 2233 234455432 4455555566788999999999995
No 18
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.40 E-value=0.0071 Score=61.64 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=53.9
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+-|.|--+. |....++...++++=+++|+-++++||.-||-||+
T Consensus 51 ~yhry--~eDi~L~~~lG~~~yRfSIsWsRI~-P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H 115 (467)
T TIGR01233 51 FYHKY--PVDLELAEEYGVNGIRISIAWSRIF-PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH 115 (467)
T ss_pred hhhhH--HHHHHHHHHcCCCEEEEecchhhcc-CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC
Confidence 66667 7999999999999999999886543 22223444458999999999999999999999997
No 19
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.40 E-value=0.0068 Score=61.95 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=52.9
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCC-CCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~-~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+.|.|--+. |.. ....-..++++=+++|+-|.++||.-|+-||+
T Consensus 65 ~Yhry--~eDi~Lm~~lG~~~yRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H 130 (476)
T PRK09589 65 FYHRY--KEDIALFAEMGFKCFRTSIAWTRIF-PQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH 130 (476)
T ss_pred HHHhh--HHHHHHHHHcCCCEEEeccchhhcC-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 66667 7999999999999999999886443 221 11233458999999999999999999999997
No 20
>PLN02998 beta-glucosidase
Probab=96.29 E-value=0.0082 Score=61.67 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=53.9
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+-|.|--+. |....++-..++++=+++|+-+.++||..|+-||+
T Consensus 80 ~Yhry--~EDi~lmk~lG~~~YRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H 144 (497)
T PLN02998 80 QYHKY--KEDVKLMADMGLEAYRFSISWSRLL-PSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH 144 (497)
T ss_pred HHHhh--HHHHHHHHHcCCCeEEeeccHHhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC
Confidence 66677 8999999999999999999986543 22223344458999999999999999999999997
No 21
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.28 E-value=0.0086 Score=61.23 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=52.8
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCC-CCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~-~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+-|.|--+. |.. ....-..++++=+++|+-+.++||..++-||+
T Consensus 71 ~Yhry--~eDi~Lm~~lG~~aYRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H 136 (478)
T PRK09593 71 MYHHY--KEDIALFAEMGFKTYRMSIAWTRIF-PKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH 136 (478)
T ss_pred hHHhh--HHHHHHHHHcCCCEEEEecchhhcc-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 66667 8999999999999999999885443 221 11233458999999999999999999999987
No 22
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=96.23 E-value=0.036 Score=47.73 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=65.6
Q ss_pred CCcceeeeeeeecccccccCCCchHHHhhhcccccccccEEeeeCCCc--EEEEEcCCcEEEEecCC---C---CceEEE
Q 020317 65 DGTQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRINETN--FHFRVFNKQFIGLDTNG---N---GIDIVA 136 (327)
Q Consensus 65 dg~~v~l~e~~~gkyv~ae~gg~~~l~Anr~~~~hWEtF~~~~ite~d--~alrs~n~~yv~a~~~~---g---~~~l~a 136 (327)
++..|-|++ ..+|||.|+..|. .+.-.+....+-..|.++.+.++. |-||+.-|+|++|.+.. | -..+..
T Consensus 6 d~~~VRLRS-~~~kYL~ADeDg~-~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q~ 83 (142)
T PF04601_consen 6 DGKHVRLRS-HHGKYLHADEDGE-GVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRVVQT 83 (142)
T ss_pred CCCEEEEEe-cCCCEEEEcCCCC-eEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEEEec
Confidence 467889999 9999999987542 122223333355678888877633 78999999999997621 1 111222
Q ss_pred eccCCCCCcceEEEEccCCCceEEEecCCCcEEEeccc
Q 020317 137 ESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTE 174 (327)
Q Consensus 137 ~~~~~~~we~F~l~~~~~~~~~~~Lra~ng~yv~a~~~ 174 (327)
...... ....++...++ ..|.||..+|+|+.++++
T Consensus 84 ~~~~~d--~~~~Wepvr~g-~~V~Lr~~~gr~LRANG~ 118 (142)
T PF04601_consen 84 DPDRLD--SSVEWEPVRDG-FYVKLRHRSGRYLRANGG 118 (142)
T ss_pred CCccCC--CCceEEEecCC-CEEEEEecCCceEEcCCC
Confidence 222211 12233333343 589999999999998854
No 23
>PLN02814 beta-glucosidase
Probab=96.23 E-value=0.0091 Score=61.44 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=53.6
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+-|.|--+. |+...+.-..++++=+++|+-|.++||.-++-||+
T Consensus 75 ~Yhry--~EDI~L~k~lG~~ayRfSIsWsRI~-P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H 139 (504)
T PLN02814 75 GYHKY--KEDVKLMAEMGLESFRFSISWSRLI-PNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH 139 (504)
T ss_pred HHHhh--HHHHHHHHHcCCCEEEEeccHhhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC
Confidence 66667 7999999999999999999886543 22222344468999999999999999999999997
No 24
>PLN02849 beta-glucosidase
Probab=96.16 E-value=0.009 Score=61.46 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=53.7
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
||..| ++|+++++++|+|+.|+-|.|--+. |.+..+.-..++++=+++|+-+.++||.-++-||+
T Consensus 77 ~YhrY--~eDI~Lm~~lG~~aYRfSIsWsRI~-P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H 141 (503)
T PLN02849 77 GYHKY--KEDVKLMVETGLDAFRFSISWSRLI-PNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH 141 (503)
T ss_pred HHHhH--HHHHHHHHHcCCCeEEEeccHHhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC
Confidence 66667 7999999999999999999876443 22223444568999999999999999999999997
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=95.85 E-value=0.0099 Score=57.64 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
++.++.++++|+|+|-++|.|-..+ +.+ .-|.-....-|+++|+.|+++||+|||-.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he-~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHE-PEE-GQFDFTGNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHS-SBT-TB---SGGG-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHhCCcceEEEeccccccC-CCC-CcccccchhhHHHHHHHHHHcCcEEEecc
Confidence 5788999999999999999665443 222 12332345779999999999999999863
No 26
>smart00642 Aamy Alpha-amylase domain.
Probab=95.73 E-value=0.037 Score=48.66 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCEEEecccccccc---CCCCCCC--C-----CcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 233 DFKFIAGNGLNAVRIPVGWWMAS---DPTPPAP--Y-----VGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 233 Df~~i~~~G~n~VRiPi~yw~~~---~~~~~~p--~-----~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.+..|+++|+++|-|+=-+-... ....+.| | .-+..+.|+++|+.|+++||+||+|+
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45689999999999654332211 0011111 1 11578999999999999999999998
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=95.47 E-value=0.029 Score=51.95 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCC--C-----CcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAP--Y-----VGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p--~-----~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+-+++|+++|+++|-|+=-+-.-.....+.| | .-|..+.|+++|+.|+++||+||+|+
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 3478999999999996532221000111122 1 11589999999999999999999998
No 28
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=94.76 E-value=0.047 Score=50.09 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=61.8
Q ss_pred ccccccEEeeeCCCcEEEEEcCCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEecCCCcEEEecc
Q 020317 98 SGWETFKLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKT 173 (327)
Q Consensus 98 ~hWEtF~~~~ite~d~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra~ng~yv~a~~ 173 (327)
..=|.|.++.+.+..|+|++-=|||++++. .+.+++.+.++|+=|+|..+... +++.+-+.|+.|...+.
T Consensus 81 ~p~e~f~avki~dsrIaLKsGyGKYlsins---dglvvg~qeAvG~~EQw~~vFq~---~r~a~~as~s~~~~~~e 150 (246)
T KOG3962|consen 81 EPEEQFMAVKISDSRIALKSGYGKYLSINS---DGLVVGRQEAVGSREQWEPVFQE---GRMALLASNSCFIRCNE 150 (246)
T ss_pred CchhhEEEEEccCceEEecccccceeeecC---CccEEEehhhcCcHhhchhhhhc---cceEEeeccceeEEech
Confidence 455789999999999999999999999988 57899999999999999888887 57899999999987764
No 29
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.68 E-value=0.07 Score=56.22 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=39.2
Q ss_pred HHHHHHcCCCEEEe-cccc------ccccCCC---CCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 234 FKFIAGNGLNAVRI-PVGW------WMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 234 f~~i~~~G~n~VRi-Pi~y------w~~~~~~---~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
++.|+++|+|+|-| ||.- |-. ++. ..+|-+ +..+.|+++|+.|+++||+||||+
T Consensus 163 ~dyl~~LGvt~i~L~Pi~e~~~~~~wGY-~~~~y~~~~~~~-Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 163 IPYVKELGFTHIELLPVAEHPFDGSWGY-QVTGYYAPTSRF-GTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCccccccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 48899999999997 8831 211 110 111111 467899999999999999999997
No 30
>PRK12313 glycogen branching enzyme; Provisional
Probab=94.36 E-value=0.088 Score=55.64 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=39.3
Q ss_pred HHHHHHcCCCEEE-eccc------ccccc--CCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 234 FKFIAGNGLNAVR-IPVG------WWMAS--DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 234 f~~i~~~G~n~VR-iPi~------yw~~~--~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
++.|+++|+|+|= .||- +|-.. +-...+|-+ |..+.|+++|+.|+++||+||||+
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5899999999999 6772 22110 000112212 578999999999999999999996
No 31
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=94.04 E-value=0.13 Score=53.42 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCEEE-eccc------ccccc--CCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 233 DFKFIAGNGLNAVR-IPVG------WWMAS--DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 233 Df~~i~~~G~n~VR-iPi~------yw~~~--~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
-+..|+++|+|+|- .||. +|-.. +....+|-+ +..+.|+++|+.|+++||+||||+
T Consensus 116 ~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 116 KLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred hhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 47889999999999 5662 12110 000111211 468999999999999999999997
No 32
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=93.63 E-value=0.35 Score=41.22 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=63.3
Q ss_pred ceeeeeeeecccccccCCCc-------hHHHhhhcccccccccEEeeeCCCcEEEEEc-CCcEEEEecCCCCceEEEecc
Q 020317 68 QLQFKSVTVGKYLCAENGGG-------TIVVANRTSASGWETFKLWRINETNFHFRVF-NKQFIGLDTNGNGIDIVAESN 139 (327)
Q Consensus 68 ~v~l~e~~~gkyv~ae~gg~-------~~l~Anr~~~~hWEtF~~~~ite~d~alrs~-n~~yv~a~~~~g~~~l~a~~~ 139 (327)
.|++|+- |++||.+...++ .+.+. ...-.|+++...++-+.||+. +||||.+.. .=+.|..+
T Consensus 7 ~V~FKg~-n~kYLry~~~~~~~~lqf~~ddI~-----dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s~----~WI~a~s~ 76 (139)
T smart00791 7 YVLFKGN-NQKYLRYQSIQQYGLLQFSADKIL-----DPLVQFEVFPTYNGLVHIKSNYTNKFWRLSH----YWITADAN 76 (139)
T ss_pred EEEEEcC-CCceEEEEeecccceeEecccccC-----CcceeEEEEEcCCCcEEEEecCCCceEccCC----CEEEecCC
Confidence 4577875 888887764221 11111 244457888777778999998 999998864 45777777
Q ss_pred CCC----CCcceEEEEccCCCceEEEec-CCCcEEEecc
Q 020317 140 TPR----SSETFEIVRNSNDLSRVRIKA-PNGFFLQAKT 173 (327)
Q Consensus 140 ~~~----~we~F~l~~~~~~~~~~~Lra-~ng~yv~a~~ 173 (327)
.+. .=-=|..+...+ +.++||- .+|.|+.--+
T Consensus 77 d~~e~~sscTLF~Pv~~d~--~~i~lr~vq~~~~~~r~t 113 (139)
T smart00791 77 DPDENKSACTLFRPLYVEM--KKIRLLNVQLGHYTKRYT 113 (139)
T ss_pred CCccCCCcccEEeEEeccC--ceEEEEEecCCceEEeec
Confidence 662 122377777654 5799998 8888887654
No 33
>PLN00196 alpha-amylase; Provisional
Probab=93.53 E-value=0.2 Score=50.56 Aligned_cols=64 Identities=20% Similarity=0.106 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCC---C-----CcchHHHHHHHHHHHHHCCCcEEEec---CCCCCCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAP---Y-----VGGSLRALDNAFTWAGYAFFPVPSDI---TISVTTS 296 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p---~-----~~~~~~~ld~~v~wa~~~gl~VilDl---H~~~PG~ 296 (327)
.+.+..|+++|++.|=||=.+.... ...+.| | .-|..+.|+++|+.|+++||+||+|+ |. .+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s-~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~-~~~~ 121 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVS-EQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR-TAEH 121 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc-cccc
Confidence 3568899999999999885333211 112222 1 11567899999999999999999998 66 4433
No 34
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=93.50 E-value=0.21 Score=51.88 Aligned_cols=57 Identities=9% Similarity=0.186 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCC--------CCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTP--------PAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~--------~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+-++.|+++|+++|=|+=-|-.-....+ .+|-+ |..+.|+++|+.|+++||+||||+
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~-Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF-GTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4578899999999985322221111001 12222 578999999999999999999997
No 35
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=93.44 E-value=0.17 Score=53.95 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=51.3
Q ss_pred ccccCCHHHHHHHHHcCCCEEE-eccccccccCC---------CCCCCC---------Cc-----chHHHHHHHHHHHHH
Q 020317 225 WSTYIVEDDFKFIAGNGLNAVR-IPVGWWMASDP---------TPPAPY---------VG-----GSLRALDNAFTWAGY 280 (327)
Q Consensus 225 ~~~~ite~Df~~i~~~G~n~VR-iPi~yw~~~~~---------~~~~p~---------~~-----~~~~~ld~~v~wa~~ 280 (327)
+.....+..++.++++|+++|. +||-.+..+.. -.++|+ .. .....++.+|+-+.+
T Consensus 197 y~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHk 276 (697)
T COG1523 197 YLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHK 276 (697)
T ss_pred eehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHH
Confidence 3344455669999999999999 89975543221 012331 11 258899999999999
Q ss_pred CCCcEEEec---CCCCCCCCC
Q 020317 281 AFFPVPSDI---TISVTTSQD 298 (327)
Q Consensus 281 ~gl~VilDl---H~~~PG~qn 298 (327)
+||.||||+ |. +-|...
T Consensus 277 aGI~VILDVVfNHT-ae~~~~ 296 (697)
T COG1523 277 AGIEVILDVVFNHT-AEGNEL 296 (697)
T ss_pred cCCEEEEEEeccCc-ccccCc
Confidence 999999998 77 654433
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=93.40 E-value=0.16 Score=54.60 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=38.9
Q ss_pred HHHHHHcCCCEEE-eccc------cccccCC---CCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 234 FKFIAGNGLNAVR-IPVG------WWMASDP---TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 234 f~~i~~~G~n~VR-iPi~------yw~~~~~---~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+..|+++|+|+|= .||- +|-. ++ ...+|-+ +..+.|+++|+.|+++||+||||+
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY-~~~~y~ai~~~~-Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGY-QPTGYYAPTSRF-GTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCCCcCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5789999999998 5762 1211 11 0112222 468999999999999999999997
No 37
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.37 E-value=0.1 Score=55.37 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEe-ccccccccCCCCCCCCCcchHHHHHHH-HHHHHHCCCcEEE
Q 020317 231 EDDFKFIAGNGLNAVRI-PVGWWMASDPTPPAPYVGGSLRALDNA-FTWAGYAFFPVPS 287 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRi-Pi~yw~~~~~~~~~p~~~~~~~~ld~~-v~wa~~~gl~Vil 287 (327)
++|++.++.+|+|+||+ ++.|-.. .|.... | .|..+|.. ++.|++.||+|||
T Consensus 33 ~ddl~~mk~~G~N~V~ig~faW~~~-eP~eG~-f---df~~~D~~~l~~a~~~Gl~vil 86 (673)
T COG1874 33 MDDLRKMKALGLNTVRIGYFAWNLH-EPEEGK-F---DFTWLDEIFLERAYKAGLYVIL 86 (673)
T ss_pred HHHHHHHHHhCCCeeEeeeEEeecc-Cccccc-c---CcccchHHHHHHHHhcCceEEE
Confidence 68999999999999999 8866533 332222 2 24456666 9999999999998
No 38
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=93.08 E-value=0.63 Score=37.03 Aligned_cols=71 Identities=11% Similarity=0.282 Sum_probs=51.7
Q ss_pred ccEEeeeC--CCcEEEEEc-CCcEEEEecCCC---CceEEEeccCCCCCcceEEEEccCCCceEEEec-CCCcEEEeccc
Q 020317 102 TFKLWRIN--ETNFHFRVF-NKQFIGLDTNGN---GIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTE 174 (327)
Q Consensus 102 tF~~~~it--e~d~alrs~-n~~yv~a~~~~g---~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra-~ng~yv~a~~~ 174 (327)
.|+++.+. ++.+.|++. .|+|+.+.. ++ +..++.-...-.+...|.|+..++| .+.|+. ..++++.+.++
T Consensus 4 ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~-~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g--~y~I~n~~s~~~Ldv~~~ 80 (105)
T PF14200_consen 4 QWTFTPVGDSDGYYKIRNVNSGKYLDVAG-GSTANGTNVQQWTCNGNDNQQWKIEPVGDG--YYRIRNKNSGKVLDVAGG 80 (105)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEGC-TTCSTTEBEEEEESSSSGGGEEEEEESTTS--EEEEEETSTTEEEEEGGG
T ss_pred EEEEEEecCCCCEEEEEECCCCCEEEeCC-CCcCCCcEEEEecCCCCcCcEEEEEEecCC--eEEEEECCCCcEEEECCC
Confidence 47777765 677999986 999999976 32 2345444444478999999999875 588888 55788888754
Q ss_pred c
Q 020317 175 E 175 (327)
Q Consensus 175 ~ 175 (327)
.
T Consensus 81 ~ 81 (105)
T PF14200_consen 81 S 81 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 39
>PLN02361 alpha-amylase
Probab=93.02 E-value=0.28 Score=49.19 Aligned_cols=59 Identities=17% Similarity=0.083 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCCC--C-----cchHHHHHHHHHHHHHCCCcEEEec---CC
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY--V-----GGSLRALDNAFTWAGYAFFPVPSDI---TI 291 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~--~-----~~~~~~ld~~v~wa~~~gl~VilDl---H~ 291 (327)
+.++.|+++|++.|=||=.+-... ...+.|. + -|..+.|+++|+.|+++||+||+|+ |.
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~-~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLA-PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCC-CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 457889999999999876543321 1223332 1 1578999999999999999999999 75
No 40
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=92.96 E-value=0.2 Score=53.94 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEE-eccc------ccccc--CCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVR-IPVG------WWMAS--DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VR-iPi~------yw~~~--~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
++-+..|+++|+|+|- .||- +|-.. +-...+|.+ +..+.|+++|+.|.++||+||||+
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4558899999999998 5652 12110 001112222 467899999999999999999996
No 41
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=92.93 E-value=0.29 Score=50.95 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEe-cc--------ccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRI-PV--------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRi-Pi--------~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+.++.|+++|+++|=| |+ +|+.. +-...+|-+ |..+.|+++|+.|+++||+||||+
T Consensus 37 ~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~-d~~~id~~~-Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 37 QRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVA-NYTAIDPTY-GTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HhhHHHHhCCCCEEEECCCCCCCCCCCCCCcc-cCCCcCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4578999999999986 33 12211 101112222 478999999999999999999998
No 42
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.91 E-value=0.19 Score=53.80 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCEEE-eccc---------------cccccCC---CCCCCCCc--chHHHHHHHHHHHHHCCCcEEEec
Q 020317 233 DFKFIAGNGLNAVR-IPVG---------------WWMASDP---TPPAPYVG--GSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 233 Df~~i~~~G~n~VR-iPi~---------------yw~~~~~---~~~~p~~~--~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
-+..|+++|+|+|- .||- ||-. ++ ...+|-+. +..+.|+++|+-|+++||+||||+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGY-d~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGY-NTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCc-CcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 48899999999999 5662 2211 11 01122221 357899999999999999999997
No 43
>PRK12568 glycogen branching enzyme; Provisional
Probab=92.84 E-value=0.23 Score=53.29 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEE-eccc------cccccCC---CCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVR-IPVG------WWMASDP---TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VR-iPi~------yw~~~~~---~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
++-+..|+++|+|+|- .||- +|-. ++ ...+|-+ +..+.|+++|+.|.++||+||||+
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY-~~~~~~a~~~~~-G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGY-QPLGLYAPTARH-GSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCC-CCCcCCccCccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4457889999999998 6762 2321 11 0112212 568999999999999999999997
No 44
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=92.80 E-value=0.59 Score=40.30 Aligned_cols=63 Identities=16% Similarity=0.366 Sum_probs=44.1
Q ss_pred CCCc-EEEEEcCCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEecCCCcEEEecc
Q 020317 109 NETN-FHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKT 173 (327)
Q Consensus 109 te~d-~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra~ng~yv~a~~ 173 (327)
.++. +-||+..+||+.|+.++-+-.+.-++.+ ....-+++...++.+-|.||+.-|+|+.+.+
T Consensus 5 ~d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s--~na~W~Ve~v~~~~~~v~L~saYGrYL~as~ 68 (142)
T PF04601_consen 5 PDGKHVRLRSHHGKYLHADEDGEGVSQDRRGAS--LNAAWTVERVPGSPNYVRLRSAYGRYLAASD 68 (142)
T ss_pred CCCCEEEEEecCCCEEEEcCCCCeEEECCCCCC--CcceEEEEEecCCCCEEEEeeccCceEeccC
Confidence 4555 7999999999999883322234444433 3444556666655578999999999999974
No 45
>PRK03705 glycogen debranching enzyme; Provisional
Probab=92.77 E-value=0.22 Score=52.98 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=38.9
Q ss_pred HHHHHHHcCCCEEE-eccc---------------ccccc--CCCCCCCCCc----chHHHHHHHHHHHHHCCCcEEEec
Q 020317 233 DFKFIAGNGLNAVR-IPVG---------------WWMAS--DPTPPAPYVG----GSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 233 Df~~i~~~G~n~VR-iPi~---------------yw~~~--~~~~~~p~~~----~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
-++.|+++|+|+|- .||- ||-.. +-...+|-+. ...+.|+++|+-|+++||+||||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 48899999999998 4662 22110 0011222221 136789999999999999999998
No 46
>PRK14705 glycogen branching enzyme; Provisional
Probab=92.72 E-value=0.22 Score=56.27 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCEEE-eccc------ccccc--CCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVR-IPVG------WWMAS--DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VR-iPi~------yw~~~--~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+-+.+|+++|+|+|- +||. +|-.. +-...+|-+ +..+.|+++|+.|.++||+||||+
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ry-Gt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRF-GHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 446889999999998 6772 23211 101111212 468999999999999999999996
No 47
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=92.66 E-value=0.63 Score=39.71 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=52.9
Q ss_pred cEEEEEcCCcEEEEecCCCCceEEEeccCCC-CCcceEEEEccCCCceEEEec-CCCcEEEecccceeeeccc
Q 020317 112 NFHFRVFNKQFIGLDTNGNGIDIVAESNTPR-SSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTADYE 182 (327)
Q Consensus 112 d~alrs~n~~yv~a~~~~g~~~l~a~~~~~~-~we~F~l~~~~~~~~~~~Lra-~ng~yv~a~~~~~L~A~~~ 182 (327)
-+++|+.|+||+++..-++-+-|....+.++ +-.+|+++...|| .|+||+ .++||.... ..-+.|+.+
T Consensus 7 ~V~FKg~n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg--~V~ik~~~~nKfWr~s-~~WI~a~s~ 76 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNG--LVHIKSNYTNKFWRLS-HYWITADAN 76 (139)
T ss_pred EEEEEcCCCceEEEEeecccceeEecccccCCcceeEEEEEcCCC--cEEEEecCCCceEccC-CCEEEecCC
Confidence 3789999999999876345667888888887 7889999998764 699999 789998666 334555554
No 48
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.22 E-value=0.29 Score=51.97 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEE-eccc------cccccCC--CCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVR-IPVG------WWMASDP--TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VR-iPi~------yw~~~~~--~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-+..|+++|+|+|- +|+. +|-.... ...+|-+ +..+.|+++|+.|.++||+||||+
T Consensus 172 ~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~-g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 172 RLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRL-GTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 334789999999999 6773 2211000 0011111 468999999999999999999997
No 49
>PLN02960 alpha-amylase
Probab=92.01 E-value=0.33 Score=52.98 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCEEE-eccc----c--cccc--CCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec---CCCCCC
Q 020317 231 EDDFKFIAGNGLNAVR-IPVG----W--WMAS--DPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI---TISVTT 295 (327)
Q Consensus 231 e~Df~~i~~~G~n~VR-iPi~----y--w~~~--~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl---H~~~PG 295 (327)
++-+..|+++|+|+|- +||. + |-.. +-...+|-+ +..+.|+++|+.|.++||+||||+ |. .|.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gtp~dfk~LVd~aH~~GI~VILDvV~NH~-~~d 494 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GTPDDFKRLVDEAHGLGLLVFLDIVHSYA-AAD 494 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CCHHHHHHHHHHHHHCCCEEEEEeccccc-CCc
Confidence 4458889999999999 6773 1 2110 000111212 468999999999999999999997 65 443
No 50
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=92.00 E-value=0.45 Score=49.36 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCEEEeccccccccCCCCC--------CCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 233 DFKFIAGNGLNAVRIPVGWWMASDPTPP--------APYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 233 Df~~i~~~G~n~VRiPi~yw~~~~~~~~--------~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
-++.|+++|+|+|=|+=-|-.-....++ +|-. |..+.++++|+.|+++||+||+|+
T Consensus 33 ~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 33 KLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-GTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred hHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4788999999999853212110000111 1211 578999999999999999999997
No 51
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=91.63 E-value=0.6 Score=40.65 Aligned_cols=75 Identities=24% Similarity=0.348 Sum_probs=51.2
Q ss_pred ccccccEEee--eCCCcEEEEEc-CCcEEEEecCCCCceEEEeccCCC-----CCcc-eEEEEccCC-CceEEEec-CCC
Q 020317 98 SGWETFKLWR--INETNFHFRVF-NKQFIGLDTNGNGIDIVAESNTPR-----SSET-FEIVRNSND-LSRVRIKA-PNG 166 (327)
Q Consensus 98 ~hWEtF~~~~--ite~d~alrs~-n~~yv~a~~~~g~~~l~a~~~~~~-----~we~-F~l~~~~~~-~~~~~Lra-~ng 166 (327)
..+-.|+++. ..++-+.||+. +||||.... .++-=+.|..+.+. +.+| |..++.+++ ...++|+. .|+
T Consensus 40 dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s-~n~~WI~ada~~p~ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~ 118 (153)
T PF07468_consen 40 DPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSS-PNDYWIWADADDPDEDQSKPSCTLFEPVKVDVKDFNVIALRNMQNG 118 (153)
T ss_dssp -CCG-EEEEE-SSTTT-EEEEETTTTEEEEESC-CC--BEEEEESSHHH-TCSTCGG-EEEEESCCCETTEEEEEETTTT
T ss_pred CCceeEEEEEcccCCCeEEEEeccCCceeEeCC-CCCcEEEecCCCcccccCCCCceEEEEEEecCCCccEEEEEecCCc
Confidence 4677899988 66788999998 999999743 32225777766554 4677 999987532 25789998 788
Q ss_pred cEEEecc
Q 020317 167 FFLQAKT 173 (327)
Q Consensus 167 ~yv~a~~ 173 (327)
.|.+--.
T Consensus 119 ~~~~r~t 125 (153)
T PF07468_consen 119 HFCKRLT 125 (153)
T ss_dssp EEEEEE-
T ss_pred eEEEEEc
Confidence 8876543
No 52
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=91.61 E-value=0.34 Score=51.13 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEE-eccccc----ccc-CCC-CCCCCC-cchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVR-IPVGWW----MAS-DPT-PPAPYV-GGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VR-iPi~yw----~~~-~~~-~~~p~~-~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
++-+.+++++|+++|- +||.=. .+. ++. .+.|-. -|.-+-|+++|+.|.++||.||||.
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 4556678999999999 788511 111 111 112211 2578999999999999999999996
No 53
>PRK10785 maltodextrin glucosidase; Provisional
Probab=91.22 E-value=0.49 Score=49.80 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEe-ccc-------cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRI-PVG-------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRi-Pi~-------yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+-++.|+++|+|+|=| ||- |+.. +-..-+|-. |..+.|+++|+.|+++||+||||+
T Consensus 183 ~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~-Dy~~iDp~~-Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 183 EKLPYLKKLGVTALYLNPIFTAPSVHKYDTE-DYRHVDPQL-GGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHcCCCEEEeCCcccCCCCCCcCcc-cccccCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4578899999999984 541 2210 001112222 578999999999999999999998
No 54
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=91.12 E-value=0.55 Score=47.90 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCC--CCC-----------------CCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDP--TPP-----------------APYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~--~~~-----------------~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
|++ -++.|+++|++.|=|+=-+...... ..+ +|-. |..+.|+++|+.|+++||+||+|+
T Consensus 24 I~~-kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~f-Gt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 24 LAE-RAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKY-GTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHH-HHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 444 4789999999999875432221000 011 1211 478899999999999999999998
No 55
>PRK09505 malS alpha-amylase; Reviewed
Probab=91.02 E-value=0.62 Score=49.87 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCEEEec-c----------------------ccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 233 DFKFIAGNGLNAVRIP-V----------------------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 233 Df~~i~~~G~n~VRiP-i----------------------~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
-+++|+++|+++|=|+ + +||.. +-..-+|-. |..+.|+++|+.|+++||+||+|+
T Consensus 235 kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~-D~~~id~~~-Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 235 KLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTL-DWTKLDANM-GTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred hhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCcc-ccccCCCCC-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4788999999999863 3 12211 000111211 578999999999999999999997
No 56
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=90.98 E-value=0.47 Score=49.94 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCEEE-eccc-------------c-ccccCCC---CCCCCCc-------chHHHHHHHHHHHHHCCCcEE
Q 020317 232 DDFKFIAGNGLNAVR-IPVG-------------W-WMASDPT---PPAPYVG-------GSLRALDNAFTWAGYAFFPVP 286 (327)
Q Consensus 232 ~Df~~i~~~G~n~VR-iPi~-------------y-w~~~~~~---~~~p~~~-------~~~~~ld~~v~wa~~~gl~Vi 286 (327)
+-++.|+++|+|+|- .||- | |-. ++. .++|-+. +..+.|+++|+.|+++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY-~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGY-DPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCC-CCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 348899999999999 5763 1 211 110 0111110 125889999999999999999
Q ss_pred Eec
Q 020317 287 SDI 289 (327)
Q Consensus 287 lDl 289 (327)
||+
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 997
No 57
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=90.74 E-value=1.7 Score=37.82 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=46.3
Q ss_pred EEEEEcCCcEEEEecCCCC--ceEEEeccCCC-CCcceEEEE--ccCCCceEEEec-CCCcEEEecccc--eeeeccc
Q 020317 113 FHFRVFNKQFIGLDTNGNG--IDIVAESNTPR-SSETFEIVR--NSNDLSRVRIKA-PNGFFLQAKTEE--LVTADYE 182 (327)
Q Consensus 113 ~alrs~n~~yv~a~~~~g~--~~l~a~~~~~~-~we~F~l~~--~~~~~~~~~Lra-~ng~yv~a~~~~--~L~A~~~ 182 (327)
+.++..|+||+++..-++. +-|..+.+.++ ++.+|+++. ..| +.|+||+ .++||....+.+ -+.|+..
T Consensus 8 V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~d--G~V~Ir~~y~nKfWrr~s~n~~WI~ada~ 83 (153)
T PF07468_consen 8 VAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHD--GLVHIRCCYNNKFWRRSSPNDYWIWADAD 83 (153)
T ss_dssp EEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTT--T-EEEEETTTTEEEEESCCC--BEEEEES
T ss_pred EEEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCC--CeEEEEeccCCceeEeCCCCCcEEEecCC
Confidence 3455569999999761122 45888888876 899999999 555 4799999 799998865433 3555543
No 58
>PLN02784 alpha-amylase
Probab=90.58 E-value=0.73 Score=50.26 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCC--C-----cchHHHHHHHHHHHHHCCCcEEEec---CCCCCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY--V-----GGSLRALDNAFTWAGYAFFPVPSDI---TISVTT 295 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~--~-----~~~~~~ld~~v~wa~~~gl~VilDl---H~~~PG 295 (327)
++.++.|+++|+++|=||=.+-... ...+.|+ + -|..+.|+.+|+.|+++||+||+|+ |. +..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s-~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~-ag~ 596 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVS-PEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHR-CAH 596 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCC-CCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccc-ccc
Confidence 4557889999999999886543321 1223332 1 1578999999999999999999997 76 543
No 59
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=90.32 E-value=0.47 Score=47.59 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCEEE-eccc--------cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 232 DDFKFIAGNGLNAVR-IPVG--------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 232 ~Df~~i~~~G~n~VR-iPi~--------yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
+-+++++++|++.|= .|+- |+. .+-..-+| .-|..+.++++++.|+++||+||+|+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~-~Dy~~id~-~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDV-SDYTKVDP-HFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccc-cchhhcCc-ccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 456788999999995 3332 332 11111223 125899999999999999999999994
No 60
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=90.20 E-value=2 Score=35.42 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=52.9
Q ss_pred EEEEEcCCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEec-CCCcEEEecccceeeecc
Q 020317 113 FHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTADY 181 (327)
Q Consensus 113 ~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra-~ng~yv~a~~~~~L~A~~ 181 (327)
++|=+.+|+|+.+.+ ++.+.++++.-+....|.++..+. +.|.|+. ..++|++.+..+.|.+..
T Consensus 3 ~~Ly~~~~~~L~i~~---~g~V~gt~~~~~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~~~ 67 (122)
T PF00167_consen 3 VQLYCRTGYFLQINP---NGTVDGTGDDNSPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYGSK 67 (122)
T ss_dssp EEEEETTSEEEEEET---TSBEEEESSTTSTTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEEES
T ss_pred EEEEECCCeEEEECC---CCeEeCCCCcCcceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEcccc
Confidence 356666799999987 467999998888999999999975 4799999 678999999877777653
No 61
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=89.49 E-value=0.81 Score=51.46 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEec
Q 020317 268 LRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 268 ~~~ld~~v~wa~~~gl~VilDl 289 (327)
.+.|+++|+-|+++||+||+|+
T Consensus 554 i~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 6789999999999999999996
No 62
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=89.28 E-value=1.2 Score=41.00 Aligned_cols=72 Identities=25% Similarity=0.396 Sum_probs=54.7
Q ss_pred cEEEEEcCCcEEEEecCCCCceEEEecc---CCCCCcceEEEEccCCCceEEEecCCCcEEEecccceeeecccCCCC
Q 020317 112 NFHFRVFNKQFIGLDTNGNGIDIVAESN---TPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTEELVTADYEGATS 186 (327)
Q Consensus 112 d~alrs~n~~yv~a~~~~g~~~l~a~~~---~~~~we~F~l~~~~~~~~~~~Lra~ng~yv~a~~~~~L~A~~~~~~~ 186 (327)
.+++.-..+.|+.|..|+ .-.+-+... -|.+-|.|.++...| ++|+|++.=|+|++.+..+.|++....+|+
T Consensus 49 ~v~ie~~~~~yl~a~dng-~ft~g~ph~~~~gp~p~e~f~avki~d--srIaLKsGyGKYlsinsdglvvg~qeAvG~ 123 (246)
T KOG3962|consen 49 TVAIEIDDGTYLGAMDNG-LFTLGAPHDEVDGPEPEEQFMAVKISD--SRIALKSGYGKYLSINSDGLVVGRQEAVGS 123 (246)
T ss_pred EEEEEecCceEEEEEecC-ceeeccCCccccCCCchhhEEEEEccC--ceEEecccccceeeecCCccEEEehhhcCc
Confidence 566766678888886633 333333322 556889999999997 589999999999999999999988877765
No 63
>PLN03059 beta-galactosidase; Provisional
Probab=89.05 E-value=0.78 Score=49.92 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
++-++.++++|+|+|-.-|.|- +-.+.+. -|.-.+..-|.+.|+.|++.||+|||=
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn-~HEp~~G-~~dF~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWN-GHEPSPG-NYYFEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccCCCCC-eeeccchHHHHHHHHHHHHcCCEEEec
Confidence 4677889999999999888554 4333222 233345788999999999999999983
No 64
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=88.73 E-value=0.86 Score=51.88 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCEEE-ecccc---------------cccc--CCCCCCCCCc-chHHHHHHHHHHHHHCCCcEEEec--
Q 020317 231 EDDFKFIAGNGLNAVR-IPVGW---------------WMAS--DPTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDI-- 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VR-iPi~y---------------w~~~--~~~~~~p~~~-~~~~~ld~~v~wa~~~gl~VilDl-- 289 (327)
++.+..|+++|+++|= .||-- |-.. +-...+|-+. +..+.++++|+-|+++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4568899999999998 56631 1110 0001122221 267899999999999999999997
Q ss_pred -CCCCCC
Q 020317 290 -TISVTT 295 (327)
Q Consensus 290 -H~~~PG 295 (327)
|. ..+
T Consensus 270 NHt-~~~ 275 (1221)
T PRK14510 270 NHT-GES 275 (1221)
T ss_pred ccc-cCC
Confidence 66 544
No 65
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=88.70 E-value=0.94 Score=43.90 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.|+..++++|+|+||+=- + + |-.. =|+++....+.||||||||-.
T Consensus 56 ~rDi~~l~~LgiNtIRVY~----v-d-----p~~n-----Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRVYS----V-D-----PSKN-----HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHT-SEEEES-------------TTS-------HHHHHHHHHTT-EEEEES-B
T ss_pred HHhHHHHHHcCCCEEEEEE----e-C-----CCCC-----HHHHHHHHHhCCCEEEEecCC
Confidence 4799999999999999832 2 2 2211 356788888999999999988
No 66
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=88.68 E-value=1.2 Score=39.18 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCEEEecc-ccccc-cCCCCC--CCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPV-GWWMA-SDPTPP--APYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi-~yw~~-~~~~~~--~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+++|+.+++.|+++|=|.- +|... ..+... .-+....-+.|+.+++.|.++||+|++-|.-
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 4789999999999996553 23211 011111 1122245689999999999999999999987
No 67
>PLN02877 alpha-amylase/limit dextrinase
Probab=87.00 E-value=1.5 Score=48.58 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEec
Q 020317 268 LRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 268 ~~~ld~~v~wa~~~gl~VilDl 289 (327)
...++++|+-|.++||+||+|+
T Consensus 465 I~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 5679999999999999999997
No 68
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=86.19 E-value=0.87 Score=43.20 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.|+.+++++|+|.||+-. | +.. .+.+++|.++||.|+.++-.
T Consensus 39 ~~d~~l~k~~G~N~iR~~h-~-------p~~----------~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHH-Y-------PPS----------PRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHHHHHTT-SEEEETT-S---------S----------HHHHHHHHHHT-EEEEE-S-
T ss_pred HHHHHHHHhcCcceEEccc-c-------cCc----------HHHHHHHhhcCCEEEEeccc
Confidence 4789999999999999822 1 111 23788999999999999744
No 69
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=85.50 E-value=2.3 Score=46.76 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCEEEe-ccc---------cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRI-PVG---------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRi-Pi~---------yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+-+.+++++|+++|=+ ||- |+. .+....+|.. |..+.++++++-|+++||+||+|+
T Consensus 24 ~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv-~D~~~idp~l-Gt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 24 ELVPYFADLGVSHLYLSPILAARPGSTHGYDV-VDHTRINPEL-GGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHhHHHHHcCCCEEEECcCccCCCCCCCCCCc-CCCCCcCCCC-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4567789999999974 331 221 1111122322 578999999999999999999998
No 70
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=85.45 E-value=2.1 Score=46.79 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCEEEe-ccc---------cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRI-PVG---------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRi-Pi~---------yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+-+.+++++|+++|=| |+- |+. .+...-+|-. |..+.|+++++-|+++||+||+|+
T Consensus 20 ~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv-~D~~~idp~l-Gt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 20 ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDV-VDHSEINPEL-GGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCC-CCCCCcCCCC-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5567889999999963 431 221 1111112222 578999999999999999999997
No 71
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=85.21 E-value=3.6 Score=33.95 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=51.4
Q ss_pred ccccccEEeeeCCCcEEEEEc-CCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEec--C-CCcEEEecc
Q 020317 98 SGWETFKLWRINETNFHFRVF-NKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA--P-NGFFLQAKT 173 (327)
Q Consensus 98 ~hWEtF~~~~ite~d~alrs~-n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra--~-ng~yv~a~~ 173 (327)
.....|+++..+.+.|.||+. .++|+|.+. .|.|.+... ...-+.|+-....+. -..+.+ . .+.||..+.
T Consensus 29 ~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~---~G~ly~~~~-~~~~C~F~e~~~~n~--y~~~~s~~~~~~~yla~~~ 102 (122)
T PF00167_consen 29 SPYSVFEIHSVGFGVVRIRGVKSCRYLCMNK---CGRLYGSKN-FNKDCVFREELLENG--YNTYESAKYGRGWYLAFNR 102 (122)
T ss_dssp STTGEEEEEEEETTEEEEEETTTTEEEEEBT---TSBEEEESS-BTGGGEEEEEEETTS--EEEEEESTTGTTEBCEBCT
T ss_pred cceeEEEEEeccceEEEEEEecceEEEEECC---CCeEccccc-cCCCceEEEEEccCC--EEEEEeccCCccEEEEECC
Confidence 466779999888888999998 999999987 456777644 456999987655543 223333 2 577787776
Q ss_pred cc
Q 020317 174 EE 175 (327)
Q Consensus 174 ~~ 175 (327)
.+
T Consensus 103 ~G 104 (122)
T PF00167_consen 103 RG 104 (122)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 72
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=84.40 E-value=2.1 Score=50.15 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCEEEe-cc---------ccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRI-PV---------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRi-Pi---------~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+-+.+++++|+++|=+ || +|+. .+....+|-+ |..+.++++++.|+++||+||||+
T Consensus 762 ~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv-~D~~~idp~l-G~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 762 AILPYLAALGISHVYASPILKARPGSTHGYDI-VDHSQINPEI-GGEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCC-CCCCccCccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4466789999999964 33 1221 1111112222 578999999999999999999998
No 73
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=84.22 E-value=1.8 Score=42.36 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHHHH---HHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFI---AGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i---~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
++|.++| ++.||.-| |.....+++.....+.++++++..|+++|++||+|+-.
T Consensus 16 ~~~~~Yi~~~~~~Gf~~I--------Ftsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRI--------FTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred hhHHHHHHHHHHcCccce--------eeecccCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 4555554 57798766 22221223333347999999999999999999999865
No 74
>PLN02801 beta-amylase
Probab=83.40 E-value=3.9 Score=42.13 Aligned_cols=57 Identities=19% Similarity=0.373 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcE--EEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~V--ilDlH~ 291 (327)
+..++.++++|++-|=+++ ||-+.....+..| .|..-+++++.+++.|||+ |+..|.
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHq 98 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQY---DWSAYRSLFELVQSFGLKIQAIMSFHQ 98 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 4678899999999999999 8854322222223 5888899999999999986 788887
No 75
>PLN02705 beta-amylase
Probab=82.94 E-value=3.9 Score=43.04 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCc--EEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP--VPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~--VilDlH~ 291 (327)
+..++.++.+|++-|=+++ ||-+.....+.-| .|..-+++++.+++.||| ||+..|.
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHq 329 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKY---VWSGYRELFNIIREFKLKLQVVMAFHE 329 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEeec
Confidence 4678889999999999999 8854322222223 588889999999999998 5778887
No 76
>PLN02161 beta-amylase
Probab=82.93 E-value=4.5 Score=41.72 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcE--EEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~V--ilDlH~ 291 (327)
+..++.++.+|++-|=+++ ||-+.... .|-.- .|..-+++++.+++.|||+ |+..|.
T Consensus 120 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~--~p~~Y-dWsgY~~l~~mvr~~GLKlq~vmSFHq 178 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEV-WWGIVERF--SPLEF-KWSLYEELFRLISEAGLKLHVALCFHS 178 (531)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeecC--CCCcC-CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 5778899999999999999 88543222 23221 5888899999999999985 677787
No 77
>PLN02803 beta-amylase
Probab=82.16 E-value=4.7 Score=41.75 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcE--EEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~V--ilDlH~ 291 (327)
+..++.++++|++-|=+++ ||-+.....+..| .|..-+++++.+++.|||+ |+..|.
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHq 168 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKY---NWEGYAELVQMVQKHGLKLQVVMSFHQ 168 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 4678889999999999999 8854332222223 5888899999999999985 677787
No 78
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=81.58 E-value=2.2 Score=42.72 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcE--EEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~V--ilDlH~ 291 (327)
+..++.++++|+.-|=++| ||-..... .|-.- .|..-+++++.+++.|||| |+-.|.
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~--~p~~y-dWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGE--GPQQY-DWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGS--STTB----HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccC--CCCcc-CcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 4678999999999999999 77553322 23211 5899999999999999987 667788
No 79
>PLN00197 beta-amylase; Provisional
Probab=81.07 E-value=5.3 Score=41.54 Aligned_cols=57 Identities=14% Similarity=0.337 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcE--EEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~V--ilDlH~ 291 (327)
+..++.++++|++-|=+++ ||-+.....+..| .|..-+++++.+++.|||+ |+..|.
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Y---dWsgY~~L~~mvr~~GLKlq~VmSFHq 188 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVY---NWGGYNELLEMAKRHGLKVQAVMSFHQ 188 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 4678889999999999999 8854332222223 4888899999999999985 677787
No 80
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=80.31 E-value=4.6 Score=38.54 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=31.9
Q ss_pred HHHHHHcCCCEEEeccc-cc-cccC--CCCCCCC-------------CcchHHHHHHHHHHHHHCCCcEE-EecCC
Q 020317 234 FKFIAGNGLNAVRIPVG-WW-MASD--PTPPAPY-------------VGGSLRALDNAFTWAGYAFFPVP-SDITI 291 (327)
Q Consensus 234 f~~i~~~G~n~VRiPi~-yw-~~~~--~~~~~p~-------------~~~~~~~ld~~v~wa~~~gl~Vi-lDlH~ 291 (327)
++..++.|||.||+=+- .+ .... ..+..|+ ....|++||+.|+.|.++||.+- |=+|+
T Consensus 36 L~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg 111 (289)
T PF13204_consen 36 LDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWG 111 (289)
T ss_dssp HHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-H
T ss_pred HHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 45567899999996653 21 1101 0111121 12379999999999999999995 45673
No 81
>PLN02905 beta-amylase
Probab=80.10 E-value=5.8 Score=41.88 Aligned_cols=57 Identities=11% Similarity=0.326 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcE--EEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~V--ilDlH~ 291 (327)
+..++.++.+|++-|=+++ ||-+.....+..| .|..-+++++.+++.|||+ |+-.|.
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Y---dWsgY~~L~~mvr~~GLKlqvVMSFHq 347 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEY---NWNGYKRLFQMVRELKLKLQVVMSFHE 347 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 5778889999999999999 8854322222223 5888899999999999985 677787
No 82
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=79.70 E-value=5.5 Score=33.74 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCEEEeccc---cccccC--CCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRIPVG---WWMASD--PTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~---yw~~~~--~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+-.+.+++.|+|+|-|-.+ -|++.. .....|+.. .+.|.++|+.|++.||+|++=+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEE
Confidence 4456789999999999664 122211 123456664 6999999999999999999743
No 83
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=78.45 E-value=0.76 Score=46.02 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=51.8
Q ss_pred CCCcceeeEeccCcEEeecCCCCCCCcCCCCCCCCCCcceeeeeeeecccccccCCCchHHHhhhcccccccccEEeeeC
Q 020317 30 NPAFRIKAVNLGGWLVTEGWIKPSLFDGIPNKDFLDGTQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRIN 109 (327)
Q Consensus 30 ~~~~~~~GVNLGgWlVlE~wi~pslF~~~~~~~~~dg~~v~l~e~~~gkyv~ae~gg~~~l~Anr~~~~hWEtF~~~~it 109 (327)
+..+.++|||+| +++|||+++.+|..-+. .....-.+...+|..++.. ++.-..+ .||.+| ++
T Consensus 13 ~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~lg~~------~~~~~~~-~~w~~~----~~ 75 (407)
T COG2730 13 VLTFLVSGVNLG--LVLEPTIADGLFKTDPK----ESPGQLVGVSWFGLNLGNH------LAQGLLE-SHWGNF----IT 75 (407)
T ss_pred cceEEEeccccc--ceeeeeecCceeecCCC----CCcceeecccccceecCch------hhcccch-hccchh----hh
Confidence 456789999999 99999999998821111 1112224444555555442 4555666 699998 88
Q ss_pred CCcE-EEEEcCCcEEEEec
Q 020317 110 ETNF-HFRVFNKQFIGLDT 127 (327)
Q Consensus 110 e~d~-alrs~n~~yv~a~~ 127 (327)
+.++ .++...=+.|+++-
T Consensus 76 ~~~~~~ik~~G~n~VRiPi 94 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPI 94 (407)
T ss_pred hhHHHHHHHcCCcEEEccc
Confidence 8776 45555666776654
No 84
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=76.31 E-value=2.8 Score=41.46 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 266 GSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 266 ~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
...+++++++++|+++||+||+|+..
T Consensus 44 ~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 44 DYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp -HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 46899999999999999999999986
No 85
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=75.86 E-value=3.7 Score=41.33 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=44.1
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCcEE-Ee-cCCCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVP-SD-ITISVTT 295 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~Vi-lD-lH~~~PG 295 (327)
..+|++.++.++++|+|.|-|.+- .+.+.. -.-. .....+.+.++++.++++|+.+| +| |-+ +||
T Consensus 137 ~~lt~e~l~~l~~~G~~rvslGvQ--S~~~~~-L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~G-lP~ 204 (430)
T PRK08208 137 ATTTAEKLALLAARGVNRLSIGVQ--SFHDSE-LHALHRPQKRADVHQALEWIRAAGFPILNIDLIYG-IPG 204 (430)
T ss_pred CcCCHHHHHHHHHcCCCEEEEecc--cCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC-CCC
Confidence 347899999999999997777663 221100 0000 11257888899999999999864 88 456 776
No 86
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=75.30 E-value=4.2 Score=39.95 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=45.1
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEe-cCCCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSD-ITISVTT 295 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilD-lH~~~PG 295 (327)
..++++.++.+++.|+|.|-|++-- +.+.. -.-. .....+.+.+++++++++|+. |-+| |-+ .||
T Consensus 99 ~~lt~e~l~~lk~~G~nrisiGvQS--~~d~v-L~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~G-lPg 166 (353)
T PRK05904 99 ELITQSQINLLKKNKVNRISLGVQS--MNNNI-LKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYC-LPI 166 (353)
T ss_pred CcCCHHHHHHHHHcCCCEEEEeccc--CCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeec-CCC
Confidence 4578999999999999987777732 11100 0000 012577888999999999997 8899 567 786
No 87
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=75.07 E-value=6.5 Score=41.62 Aligned_cols=58 Identities=24% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
++-++..++.|+|.|.-.|-|- .-.+.+. .|.-++--.|.+.|..|++.||+|+|=+-
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~Hep~~g-~y~FsG~~DlvkFikl~~~~GLyv~LRiG 109 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-LHEPSPG-KYDFSGRYDLVKFIKLIHKAGLYVILRIG 109 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-cccCCCC-cccccchhHHHHHHHHHHHCCeEEEecCC
Confidence 4667788899999999999554 4333222 23323445566779999999999998543
No 88
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=75.06 E-value=4.4 Score=43.41 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHcCCCEEE-eccc----cc-c-------ccCCCCCCCCC----cchHHHHHHHHHHHHHCCCcEEEec
Q 020317 229 IVEDDFKFIAGNGLNAVR-IPVG----WW-M-------ASDPTPPAPYV----GGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VR-iPi~----yw-~-------~~~~~~~~p~~----~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+||+++.-|+++|+|+|. +||- |. . |+.+ ..-|- ......++++|+.|.+.||-||||+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFap--ssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAP--SSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecc--cccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 467889999999999999 5763 21 1 1111 11110 1246789999999999999999997
No 89
>PRK10150 beta-D-glucuronidase; Provisional
Probab=75.05 E-value=4.1 Score=42.76 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..|+++++++|+|+||+-- | |.. +.+++.|-++||.|+-++
T Consensus 316 ~~d~~l~K~~G~N~vR~sh-~----------p~~-------~~~~~~cD~~GllV~~E~ 356 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSH-Y----------PYS-------EEMLDLADRHGIVVIDET 356 (604)
T ss_pred HHHHHHHHHCCCCEEEecc-C----------CCC-------HHHHHHHHhcCcEEEEec
Confidence 4678999999999999931 1 111 137899999999999876
No 90
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=74.56 E-value=5.2 Score=41.79 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCEEEec---------cccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 233 DFKFIAGNGLNAVRIP---------VGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 233 Df~~i~~~G~n~VRiP---------i~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
-.++|+++|++.|=|| ++||. .+...-.|= -|..+.++.+|.++.+.||++|+|+
T Consensus 45 kldyi~~lG~taiWisP~~~s~~~~~GY~~-~d~~~l~p~-fGt~edf~~Li~~~h~~gi~ii~D~ 108 (545)
T KOG0471|consen 45 KLDYIKELGFTAIWLSPFTKSSKPDFGYDA-SDLEQLRPR-FGTEEDFKELILAMHKLGIKIIADL 108 (545)
T ss_pred hhhHHHhcCCceEEeCCCcCCCHHHhccCc-cchhhhccc-ccHHHHHHHHHHHHhhcceEEEEee
Confidence 4678899999999865 33442 111111111 1578999999999999999999998
No 91
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=74.33 E-value=8.2 Score=39.99 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCC-CCCCCcchHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCCCC-CCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDLTI-MGG 304 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~-~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~~~PG~qn~~~-~sG 304 (327)
++|+++|+++|+++.|+-|+|--+..... ....-+.++++-..+|+...++||..++-|.+ -.=-|.-.| +.|
T Consensus 94 keDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-wDlPq~LeDeYgG 168 (524)
T KOG0626|consen 94 KEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-WDLPQALEDEYGG 168 (524)
T ss_pred HHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-CCCCHHHHHHhcc
Confidence 69999999999999999999854432111 11222358999999999999999999999876 333344333 444
No 92
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=73.01 E-value=5.2 Score=39.95 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEec-CCCCCC
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTT 295 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilDl-H~~~PG 295 (327)
+|++.++.+++.|+|.|-|-+ ..+.+.. -.-. .....+.+.++++.+++.|+. |-+|| -+ +||
T Consensus 113 lt~e~l~~l~~~GvnrislGv--QS~~d~~-L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~G-lPg 178 (400)
T PRK07379 113 FDLEQLQGYRSLGVNRVSLGV--QAFQDEL-LALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISG-LPH 178 (400)
T ss_pred CCHHHHHHHHHCCCCEEEEEc--ccCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC-CCC
Confidence 688999999999999655554 3321110 0000 012577888999999999999 77995 56 887
No 93
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=72.58 E-value=11 Score=40.21 Aligned_cols=60 Identities=17% Similarity=0.031 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEecccccc----------ccCC----C--CCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWM----------ASDP----T--PPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~----------~~~~----~--~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.-++++++.|++.|=+.=-|-. ..+. . .-+|-+ |..+.++++++.|+++||+||+||=-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~-GT~eDf~~L~~~Ah~~G~~vi~DlVp 152 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLL-GSEEELIQLSRMAAAHNAITIDDIIP 152 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCccc-CCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46788999999999986432322 0010 0 012222 57999999999999999999999843
No 94
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=70.79 E-value=7.5 Score=38.15 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=43.8
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEecC-CCCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDIT-ISVTTS 296 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilDlH-~~~PG~ 296 (327)
..+|++.++.+++.|+|.|-|.+ ..+.+.. -.-. .....+.+.++++.++++|+. |-+|+= + .||-
T Consensus 95 ~~~t~e~l~~l~~~G~~rvsiGv--qS~~d~~-L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~G-lPgq 163 (374)
T PRK05799 95 GTFTEEKLKILKSMGVNRLSIGL--QAWQNSL-LKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFG-LPNQ 163 (374)
T ss_pred CcCCHHHHHHHHHcCCCEEEEEC--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCCC
Confidence 45789999999999999666666 3221100 0000 112577888999999999997 768854 5 6763
No 95
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=70.41 E-value=6.6 Score=38.65 Aligned_cols=66 Identities=15% Similarity=-0.042 Sum_probs=45.4
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEec-CCCCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTTS 296 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilDl-H~~~PG~ 296 (327)
..++++.++.++++|+|.|-|.+--. .+. .-.-+ .....+.+.++++.++++|+. |.+|+ -+ .||-
T Consensus 104 ~~i~~e~l~~l~~~G~~rvslGvQS~--~~~-~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~G-lPgq 172 (375)
T PRK05628 104 ESTSPEFFAALRAAGFTRVSLGMQSA--APH-VLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYG-TPGE 172 (375)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecccC--CHH-HHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEecc-CCCC
Confidence 35789999999999999888777321 110 00000 012577888999999999999 98996 55 6653
No 96
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=69.73 E-value=23 Score=29.46 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=46.9
Q ss_pred EcCCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEec-CCCcEEEecccceeeecc
Q 020317 117 VFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTADY 181 (327)
Q Consensus 117 s~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra-~ng~yv~a~~~~~L~A~~ 181 (327)
..++.|+.+.. +|.+.++++.-.....|++...+. +.|.||. ..++|++.+.-+.|.+..
T Consensus 5 ~~~~~~L~I~~---dG~V~Gt~~~~~~~s~l~~~s~~~--g~v~i~~v~s~~YLCmn~~G~ly~s~ 65 (123)
T cd00058 5 CRTGFHLQILP---DGTVDGTRDDSSSYTILERIAVAV--GVVSIKGVASCRYLCMNKCGKLYGSK 65 (123)
T ss_pred EcCCeEEEEcC---CCcEecccCCCCCCceEEEEECCC--CEEEEEEcccceEEEECCCCCEEECC
Confidence 33588888876 466888887766888898888764 5799999 689999999877666554
No 97
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=69.42 E-value=7.8 Score=37.88 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=47.2
Q ss_pred hhh-cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC--CcchHHHHHHHHHHHHHCCCc-EEEecCCCCCCC
Q 020317 221 VMR-HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY--VGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 296 (327)
Q Consensus 221 ~l~-~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~--~~~~~~~ld~~v~wa~~~gl~-VilDlH~~~PG~ 296 (327)
.++ +- ..+|++.++.++++|+|-|-|.|- .+.+.. -.. .....+.+.++++.++++|+. |-+|+=--.||
T Consensus 88 tiE~nP-~~~~~e~l~~l~~~GvnRiSiGvQ--S~~~~~--L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg- 161 (350)
T PRK08446 88 TTEANP-NSATKAWLKGMKNLGVNRISFGVQ--SFNEDK--LKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL- 161 (350)
T ss_pred EEEeCC-CCCCHHHHHHHHHcCCCEEEEecc--cCCHHH--HHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC-
Confidence 344 44 347899999999999997666663 221110 001 112578899999999999997 55887532676
Q ss_pred CC
Q 020317 297 QD 298 (327)
Q Consensus 297 qn 298 (327)
|+
T Consensus 162 qt 163 (350)
T PRK08446 162 DN 163 (350)
T ss_pred CC
Confidence 44
No 98
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=69.40 E-value=5.6 Score=43.96 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec---CCCCCCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI---TISVTTS 296 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl---H~~~PG~ 296 (327)
....++++|+-|+++||+||+|+ |. .+++
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt-~~~g 433 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHT-NASG 433 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccc-cccC
Confidence 46789999999999999999998 66 4443
No 99
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=69.14 E-value=6.1 Score=40.06 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=44.2
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEec-CCCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTT 295 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilDl-H~~~PG 295 (327)
..+|++.++.+++.|+|.|-|-+ ..+.+. .-... .....+.+.+++++++++|+. |-+|+ -+ +||
T Consensus 148 ~~lt~e~l~~L~~~G~~rvsiGv--QS~~~~-vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~G-lPg 215 (453)
T PRK13347 148 RTVTAEMLQALAALGFNRASFGV--QDFDPQ-VQKAINRIQPEEMVARAVELLRAAGFESINFDLIYG-LPH 215 (453)
T ss_pred ccCCHHHHHHHHHcCCCEEEECC--CCCCHH-HHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEe-CCC
Confidence 35799999999999999665555 222110 00000 112678899999999999997 77885 56 776
No 100
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=68.08 E-value=6.9 Score=43.97 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+.|+++++++|+|+||+.. | +..| ++.++|-++||+|+-+.
T Consensus 374 ~~di~lmK~~g~NaVR~sH-y-------P~~p----------~fydlcDe~GilV~dE~ 414 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCSH-Y-------PNHP----------LWYELCDRYGLYVVDEA 414 (1027)
T ss_pred HHHHHHHHHCCCCEEEecC-C-------CCCH----------HHHHHHHHcCCEEEEec
Confidence 4589999999999999931 1 1122 36789999999999885
No 101
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=67.95 E-value=9.4 Score=37.38 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=44.6
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEecCCCCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 296 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilDlH~~~PG~ 296 (327)
..+|++.++.++++|+|.|-|-+- .+.+.. -.-. .....+.+.++++.++++|+. |-+|+---+||-
T Consensus 96 ~~lt~e~l~~l~~~Gv~risiGvq--S~~~~~-l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 96 ELITAEWCKGLKGAGINRLSLGVQ--SFRDDK-LLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecc--cCChHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 357899999999999997766663 221100 0000 113588899999999999996 778865426653
No 102
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=67.87 E-value=7.4 Score=42.60 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.|++.++++|+|.||.- +| |+. ++..++|.++||.||-|.=.
T Consensus 324 ~~dl~lmk~~n~N~vRts-Hy----------P~~-------~~~ydLcDelGllV~~Ea~~ 366 (808)
T COG3250 324 ERDLKLMKEANMNSVRTS-HY----------PNS-------EEFYDLCDELGLLVIDEAMI 366 (808)
T ss_pred HHHHHHHHHcCCCEEEec-CC----------CCC-------HHHHHHHHHhCcEEEEecch
Confidence 578999999999999986 33 221 24788999999999998644
No 103
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=67.33 E-value=9.3 Score=37.69 Aligned_cols=70 Identities=19% Similarity=0.116 Sum_probs=45.4
Q ss_pred hh-cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEec-CCCCCCC
Q 020317 222 MR-HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTTS 296 (327)
Q Consensus 222 l~-~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilDl-H~~~PG~ 296 (327)
++ +-+ .++++.++.+++.|+|.|-|-+- .+.+.. -.-. .....+.+.++++.+++.|+. |-+|| -+ +||-
T Consensus 94 ~E~~P~-~~~~~~l~~l~~~G~nrislGvQ--S~~~~~-L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~G-lPgq 167 (370)
T PRK06294 94 LEANPE-NLSESYIRALALTGINRISIGVQ--TFDDPL-LKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYG-LPTQ 167 (370)
T ss_pred EEeCCC-CCCHHHHHHHHHCCCCEEEEccc--cCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC-CCCC
Confidence 44 443 36889999999999996666552 221100 0000 012467788899999999996 88995 55 7763
No 104
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=66.02 E-value=58 Score=27.10 Aligned_cols=71 Identities=4% Similarity=0.051 Sum_probs=50.0
Q ss_pred cccccEEeeeCCCcEEEEEc-CCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEecC---CCcEEEeccc
Q 020317 99 GWETFKLWRINETNFHFRVF-NKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAP---NGFFLQAKTE 174 (327)
Q Consensus 99 hWEtF~~~~ite~d~alrs~-n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra~---ng~yv~a~~~ 174 (327)
.+..|++.....+.|.||+. .++|+|.+. -|.|-+.. .+..-+.|+-....++ -..+.+. .+.||..+..
T Consensus 28 ~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~---~G~ly~s~-~~~~dC~F~E~~~~n~--Y~~y~S~~~~~~~ylal~~~ 101 (123)
T cd00058 28 SYTILERIAVAVGVVSIKGVASCRYLCMNK---CGKLYGSK-GFTEECLFREELLENN--YNTYASAKYRRRWYLALNKK 101 (123)
T ss_pred CCceEEEEECCCCEEEEEEcccceEEEECC---CCCEEECC-CCCCCCEEEEEEccCC--cEEEEEcccCCCcEEEECCC
Confidence 56778888888888999998 999999987 35577776 7788999976555422 1223332 3567777654
Q ss_pred c
Q 020317 175 E 175 (327)
Q Consensus 175 ~ 175 (327)
+
T Consensus 102 G 102 (123)
T cd00058 102 G 102 (123)
T ss_pred C
Confidence 3
No 105
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=65.89 E-value=7.5 Score=43.66 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+.|+++++++|+|+||.-. . |.+| +..+.|-++||+|+-+.
T Consensus 358 ~~dl~lmK~~g~NavR~sH----y----P~~~----------~fydlcDe~GllV~dE~ 398 (1021)
T PRK10340 358 EKDIQLMKQHNINSVRTAH----Y----PNDP----------RFYELCDIYGLFVMAET 398 (1021)
T ss_pred HHHHHHHHHCCCCEEEecC----C----CCCH----------HHHHHHHHCCCEEEECC
Confidence 4688999999999999841 1 1223 26789999999999874
No 106
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=62.96 E-value=37 Score=28.36 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=48.5
Q ss_pred EEEEEcCCcEEEEecCCCCceEEEeccCCCCCcceEEEEccCCCceEEEec-CCCcEEEecccceeeeccc
Q 020317 113 FHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTADYE 182 (327)
Q Consensus 113 ~alrs~n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~~~~~~~~Lra-~ng~yv~a~~~~~L~A~~~ 182 (327)
.+|=+.++.|+.+.. ++.+..+++.......|++...+. +.|.||. ..++|++.+.-+.|.+...
T Consensus 5 ~~Ly~~~~~~L~I~~---~G~V~Gt~~~~~~~~ile~~s~~~--g~V~ik~~~s~~YLCmn~~G~ly~s~~ 70 (126)
T smart00442 5 RQLYCRNGQHLQILP---DGTVDGTRDESSSFTILEIIAVAV--GVVAIKGVASCRYLCMNKCGKLYGSKN 70 (126)
T ss_pred EEEEeCCCeEEEEcC---CceEecccCCCCcceEEEEEeccC--CEEEEEEcccceEEEECCCCCEEEccc
Confidence 355556778888876 456778777767778888877764 5799999 6799999998777766543
No 107
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=62.82 E-value=11 Score=36.54 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=46.8
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCc-chHHHHHHHHHHHHHCCCcEEEe-cCCCCCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSD-ITISVTT 295 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~-~~~~~ld~~v~wa~~~gl~VilD-lH~~~PG 295 (327)
-+..+++++.++.++++|++ +||-+|...+.+..-..-... -..+.+.++++.++++||.|..+ |-+ .||
T Consensus 110 srpd~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G-~P~ 181 (313)
T TIGR01210 110 SRPEFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFK-PPF 181 (313)
T ss_pred eCCCcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEec-CCC
Confidence 34467899999999999976 466676654322100000111 15778889999999999998888 445 665
No 108
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=61.85 E-value=12 Score=36.74 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=44.3
Q ss_pred ccCCHHHHHHHHHcCCCEEEecccccc--ccCCCCCCCCCcchHHHHHHHHHHHHHCCCc-EEEec-CCCCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWM--ASDPTPPAPYVGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTTS 296 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~--~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~-VilDl-H~~~PG~ 296 (327)
..++++.++.++++|+|.|-|.+---. ..+. .. .....+.+.+++++++++|+. |-+|+ -+ .||-
T Consensus 96 ~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~--l~--r~~~~~~~~~~i~~l~~~g~~~v~~dli~G-lPgq 164 (377)
T PRK08599 96 GDLTKEKLQVLKDSGVNRISLGVQTFNDELLKK--IG--RTHNEEDVYEAIANAKKAGFDNISIDLIYA-LPGQ 164 (377)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecccCCHHHHHH--cC--CCCCHHHHHHHHHHHHHcCCCcEEEeeecC-CCCC
Confidence 356889999999999997777773210 0000 00 112578888999999999997 66886 45 6763
No 109
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=61.13 E-value=18 Score=34.89 Aligned_cols=55 Identities=18% Similarity=0.064 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCEEEeccccccc-cCCCCCCC---------CCcchHHHHHHHHHHHHHCCCcEE
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMA-SDPTPPAP---------YVGGSLRALDNAFTWAGYAFFPVP 286 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~-~~~~~~~p---------~~~~~~~~ld~~v~wa~~~gl~Vi 286 (327)
+-++.++++|+|+|=+-+....- .=+...+| ....+++.|..+|+.|+|+||.|.
T Consensus 23 ~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevH 87 (311)
T PF02638_consen 23 EMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVH 87 (311)
T ss_pred HHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEE
Confidence 45677889999999776642210 00111122 112259999999999999999876
No 110
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=59.60 E-value=12 Score=36.99 Aligned_cols=71 Identities=17% Similarity=0.103 Sum_probs=47.0
Q ss_pred hhh-cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCcEEEecC-CCCCCC
Q 020317 221 VMR-HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDIT-ISVTTS 296 (327)
Q Consensus 221 ~l~-~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~VilDlH-~~~PG~ 296 (327)
.++ +-+ .++++.++.++++|+| ||-+|-..+.+..- .-. .....+.+.++++++++.++.|-+||= + +||-
T Consensus 94 t~E~~P~-~i~~e~L~~l~~~Gvn--rislGvQS~~d~vL-~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~G-lPgq 167 (380)
T PRK09057 94 TLEANPT-SVEAGRFRGYRAAGVN--RVSLGVQALNDADL-RFLGRLHSVAEALAAIDLAREIFPRVSFDLIYA-RPGQ 167 (380)
T ss_pred EEEECcC-cCCHHHHHHHHHcCCC--EEEEecccCCHHHH-HHcCCCCCHHHHHHHHHHHHHhCccEEEEeecC-CCCC
Confidence 455 554 4788999999999999 55555444322100 000 012567788899999999999999974 5 6764
No 111
>PRK05660 HemN family oxidoreductase; Provisional
Probab=58.58 E-value=15 Score=36.33 Aligned_cols=71 Identities=17% Similarity=0.042 Sum_probs=45.7
Q ss_pred hhh-cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCcE-EEecCCCCCC
Q 020317 221 VMR-HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPV-PSDITISVTT 295 (327)
Q Consensus 221 ~l~-~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~V-ilDlH~~~PG 295 (327)
.++ +- ..++++.++.++++|+| ||-+|-..+.+.. -.-. .....+.+.++++.+++.|+.. -+|+=--+||
T Consensus 97 t~e~np-~~l~~e~l~~Lk~~Gv~--risiGvqS~~~~~-L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg 170 (378)
T PRK05660 97 TMEANP-GTVEADRFVGYQRAGVN--RISIGVQSFSEEK-LKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD 170 (378)
T ss_pred EEEeCc-CcCCHHHHHHHHHcCCC--EEEeccCcCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 444 43 34788999999999999 5555544332110 0000 1126788899999999999975 4887542676
No 112
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=58.36 E-value=12 Score=39.02 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=44.9
Q ss_pred ccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCcEEEecCCCCCC
Q 020317 225 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDITISVTT 295 (327)
Q Consensus 225 ~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~VilDlH~~~PG 295 (327)
+-.+++++.++.+++.|++ ||-+|-..+.+.. -.-. .....+.+.+++++++++|++|.+||=--+||
T Consensus 200 RPD~i~~e~L~~L~~~G~~--rVslGVQS~~d~V-L~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 200 RPDYCREEHIDRMLKLGAT--RVELGVQTIYNDI-LERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred cCCcCCHHHHHHHHHcCCC--EEEEECccCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 4467899999999999997 5555544332110 0000 01257888999999999999877776422555
No 113
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=56.86 E-value=13 Score=37.64 Aligned_cols=65 Identities=9% Similarity=-0.095 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCC-CcEEEecC-CCCCCC
Q 020317 228 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAF-FPVPSDIT-ISVTTS 296 (327)
Q Consensus 228 ~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~g-l~VilDlH-~~~PG~ 296 (327)
.+|++.++.+++.|+|.|-|-|- .+.+.. -.-. .....+.+.++++.++++| +.|.+||= + +||-
T Consensus 160 ~~t~e~l~~l~~aGvnRiSiGVQ--Sf~d~v-Lk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~G-lPgq 227 (449)
T PRK09058 160 GFDDEKADAALDAGANRFSIGVQ--SFNTQV-RRRAGRKDDREEVLARLEELVARDRAAVVCDLIFG-LPGQ 227 (449)
T ss_pred cCCHHHHHHHHHcCCCEEEecCC--cCCHHH-HHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEee-CCCC
Confidence 46889999999999997766663 221100 0000 0124677888999999999 88999984 5 6654
No 114
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=55.12 E-value=28 Score=32.73 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=50.5
Q ss_pred hhh-cccccCCHHHHHHHHHcCCCEEEeccccccc-cCCC----CC-------CCCCcchHHHHHHHHHHHHHCCCcEEE
Q 020317 221 VMR-HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMA-SDPT----PP-------APYVGGSLRALDNAFTWAGYAFFPVPS 287 (327)
Q Consensus 221 ~l~-~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~-~~~~----~~-------~p~~~~~~~~ld~~v~wa~~~gl~Vil 287 (327)
.+. .|..|+..+.......-|++.+++.-+...+ .+.. .. .....++++.|++.++.+++.+.+|+|
T Consensus 139 ~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v~I 218 (296)
T cd00842 139 ALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKVWI 218 (296)
T ss_pred HHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 444 6777777766666667777777653333221 1110 00 011135899999999999999999999
Q ss_pred ecCCCCCCCCC
Q 020317 288 DITISVTTSQD 298 (327)
Q Consensus 288 DlH~~~PG~qn 298 (327)
=+|. .||...
T Consensus 219 ~~Hi-Pp~~~~ 228 (296)
T cd00842 219 IGHI-PPGVNS 228 (296)
T ss_pred Eecc-CCCCcc
Confidence 9999 888643
No 115
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=54.99 E-value=24 Score=27.80 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=38.7
Q ss_pred cceeeeeeeecccccccCCCc---hHHHhhhcccccccccEEeeeCCCcEEEEEc-CCcEEEEec
Q 020317 67 TQLQFKSVTVGKYLCAENGGG---TIVVANRTSASGWETFKLWRINETNFHFRVF-NKQFIGLDT 127 (327)
Q Consensus 67 ~~v~l~e~~~gkyv~ae~gg~---~~l~Anr~~~~hWEtF~~~~ite~d~alrs~-n~~yv~a~~ 127 (327)
....|+....|++|....+.. ..+..-......-+.|+++..+++.+.|++. .++++.+.+
T Consensus 15 g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~ 79 (105)
T PF14200_consen 15 GYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAG 79 (105)
T ss_dssp TEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGG
T ss_pred CEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECC
Confidence 345667667788887765421 1111111111356778899988888999997 788888765
No 116
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=52.66 E-value=18 Score=34.12 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=42.2
Q ss_pred CHHHHHHHHHcCCCEEEeccc--cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~--yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+|++...+.|+..||+.++ -.+...... .-....++.+.++++.|+++|++|.+.+=.
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~--~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHG--KSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 358999999999999998764 221110000 011236888999999999999999888744
No 117
>PLN03244 alpha-amylase; Provisional
Probab=52.53 E-value=13 Score=40.58 Aligned_cols=24 Identities=21% Similarity=-0.010 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHCCCcEEEec
Q 020317 266 GSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 266 ~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
|..+-|+++|+.|.++||.||||+
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 467889999999999999999995
No 118
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=51.51 E-value=23 Score=29.11 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=25.2
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCCCCCCC
Q 020317 271 LDNAFTWAGYAFFPVPSDITISVTTSQDL 299 (327)
Q Consensus 271 ld~~v~wa~~~gl~VilDlH~~~PG~qn~ 299 (327)
++++++.-+++|+.|++|+=. .|.|++.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~-~P~S~~~ 29 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL-WPRSRKP 29 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC-CCCCCCC
Confidence 678899999999999999999 9998854
No 119
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=51.16 E-value=46 Score=33.81 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEe-ccc-------cccccCCCCCCCC--C---cchHHHHHHHHHHH-HHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRI-PVG-------WWMASDPTPPAPY--V---GGSLRALDNAFTWA-GYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRi-Pi~-------yw~~~~~~~~~p~--~---~~~~~~ld~~v~wa-~~~gl~VilDlH~ 291 (327)
++-++.+++.|+|.|-+ |+- .+.+.+....+|- . ...++.|.++|.-+ +++||.+|.|++-
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~ 99 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVL 99 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEee
Confidence 56788999999999984 442 1112221112221 1 12578999999887 5899999999965
No 120
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=50.53 E-value=19 Score=33.00 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
+++++..++.|+..|||++.-..........--..+.++.+.++++.|+++|+.|.+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 68899999999999999985221100000000112368889999999999999999998
No 121
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=50.17 E-value=40 Score=31.74 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
...+|++...+.|+..|||.+.- ..++.+.++++.|+++|++|.+.+=.
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 35678888888899999997621 25788888999999999999988765
No 122
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=49.66 E-value=22 Score=35.40 Aligned_cols=74 Identities=14% Similarity=0.067 Sum_probs=46.7
Q ss_pred hhhh-cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCCCCCCC
Q 020317 220 QVMR-HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTS 296 (327)
Q Consensus 220 ~~l~-~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~~~PG~ 296 (327)
-.++ +-. .++++.++.+++.|+| ||-+|-..+.+..-..--.....+...++++.|++.+..|-+||=--+||-
T Consensus 100 itiE~nP~-~~~~e~l~~l~~~Gvn--RiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 100 ITLETNPT-SFETEKFKAFKLAGIN--RVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred EEEEeCCC-cCCHHHHHHHHHCCCC--EEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 3445 443 4788999999999998 555554443211000000112567778889999999889999964327764
No 123
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=48.47 E-value=14 Score=35.23 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=34.6
Q ss_pred ccCCHHHHHHH-HHcCCCEEEeccccccccCCCC---CCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 227 TYIVEDDFKFI-AGNGLNAVRIPVGWWMASDPTP---PAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 227 ~~ite~Df~~i-~~~G~n~VRiPi~yw~~~~~~~---~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+|.+|++.. .+.|....++++=+- +.+.. +.|| .++.|+++.++|++|||+|.+|=-
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~l--e~t~~~~GG~~~---s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSL--ENTTELAGGTVY---SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEE--ESSBTTTTSB------HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEE--EecCcCCCCeeC---CHHHHHHHHHHHHhCceEEEEehh
Confidence 45677777754 444543333333222 22211 2333 589999999999999999999943
No 124
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=48.32 E-value=19 Score=31.05 Aligned_cols=61 Identities=7% Similarity=-0.047 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+..++..+..|+..|+++.+-+........+.-.....+.|+++++.|+++|+.+.|=-|.
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 3566777889999999998732111100000111235788899999999999888887777
No 125
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=47.71 E-value=37 Score=39.43 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEe-ccc--------cccccCCCCCCCCC---cchHHHHHHHHHHHHH-CCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRI-PVG--------WWMASDPTPPAPYV---GGSLRALDNAFTWAGY-AFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRi-Pi~--------yw~~~~~~~~~p~~---~~~~~~ld~~v~wa~~-~gl~VilDlH~ 291 (327)
++.++.+++.|+|.|-+ ||- |- ..|-..-+|.. .+..+.++++|+.+++ +||+||+|+=-
T Consensus 135 ~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ys-i~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~ 207 (1464)
T TIGR01531 135 EPRLRVAKEKGYNMIHFTPLQELGGSNSCYS-LYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVF 207 (1464)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCcc-ccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 57899999999999984 331 11 11111123322 1467889999999988 59999999843
No 126
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=47.29 E-value=1.5e+02 Score=24.69 Aligned_cols=51 Identities=4% Similarity=0.075 Sum_probs=38.6
Q ss_pred cccccEEeeeCCCcEEEEEc-CCcEEEEecCCCCceEEEeccCCCCCcceEEEEcc
Q 020317 99 GWETFKLWRINETNFHFRVF-NKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNS 153 (327)
Q Consensus 99 hWEtF~~~~ite~d~alrs~-n~~yv~a~~~~g~~~l~a~~~~~~~we~F~l~~~~ 153 (327)
....|++.....+.|.||+. .++|+|.+. -|.|-+... ...-+.|.-....
T Consensus 32 ~~~ile~~s~~~g~V~ik~~~s~~YLCmn~---~G~ly~s~~-~~~dC~F~E~~~~ 83 (126)
T smart00442 32 SFTILEIIAVAVGVVAIKGVASCRYLCMNK---CGKLYGSKN-FTEDCVFREEMEE 83 (126)
T ss_pred cceEEEEEeccCCEEEEEEcccceEEEECC---CCCEEEccc-CCCCcEEEEEecc
Confidence 45567777777788999998 999999987 355777665 5688899765443
No 127
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=47.24 E-value=26 Score=35.56 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCC-cEEEecCCCCCC
Q 020317 228 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFF-PVPSDITISVTT 295 (327)
Q Consensus 228 ~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl-~VilDlH~~~PG 295 (327)
.+|++.++.++++|+|.|.|.+--- .+. .-.-+ .....+.+.++++.++++|+ .|-+|+=--.||
T Consensus 148 ~lt~e~l~~l~~aG~~risiGvqS~--~~~-~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (453)
T PRK09249 148 ELDLEMLDALRELGFNRLSLGVQDF--DPE-VQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK 214 (453)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCC--CHH-HHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 4789999999999999887777321 100 00000 01267888899999999999 788886531666
No 128
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=46.42 E-value=24 Score=36.36 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=45.2
Q ss_pred ccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCC-cEEEecCCCCCC
Q 020317 225 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFF-PVPSDITISVTT 295 (327)
Q Consensus 225 ~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl-~VilDlH~~~PG 295 (327)
+-..+|++.++.+++.|++.|-|.+ ..+.+.. -.-. .....+.+.++++.|+++|+ .|-+|+=--+||
T Consensus 263 rPd~it~e~L~~Lk~~Gv~RISIGv--QS~~d~v-Lk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg 332 (488)
T PRK08207 263 RPDTITEEKLEVLKKYGVDRISINP--QTMNDET-LKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG 332 (488)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEcC--CcCCHHH-HHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC
Confidence 4456899999999999999655555 3221100 0000 11368889999999999999 677886432665
No 129
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=46.02 E-value=58 Score=32.14 Aligned_cols=60 Identities=13% Similarity=-0.032 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
.|.++.+.+.++|++.||+=|+-=...........-..++..|-++.+.|+++++.||.|
T Consensus 159 ~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 159 VTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 578999999999999999998632221111111111127999999999999999999988
No 130
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=45.33 E-value=24 Score=35.16 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCcEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 020317 270 ALDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGGPVHNTPK 311 (327)
Q Consensus 270 ~ld~~v~wa~~~gl~VilDlH~~~PG~qn~~~~sG~~~~~~~ 311 (327)
.+|.+.+.|++|||.||-|-+. +-|+.-.....|..+.-..
T Consensus 137 dm~~i~~la~~~~l~vIEDaAq-a~Ga~y~gk~vGt~Gd~~~ 177 (374)
T COG0399 137 DMDAIMALAKRHGLPVIEDAAQ-AHGATYKGKKVGSFGDIGA 177 (374)
T ss_pred CHHHHHHHHHHcCCeEEEEcch-hccCeecCcccccccceEE
Confidence 3788999999999999999999 9999877778887654333
No 131
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=45.26 E-value=24 Score=35.72 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEecC-CCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDIT-ISVTT 295 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilDlH-~~~PG 295 (327)
..++++.++.++++|+|.|-|-+- .+.+.. -+-. .....+.+.++++.++++|+. |-+|+- + +||
T Consensus 147 ~~l~~e~l~~lk~~G~~risiGvq--S~~~~~-l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~G-lPg 214 (455)
T TIGR00538 147 RYITKDVIDALRDEGFNRLSFGVQ--DFNKEV-QQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYG-LPK 214 (455)
T ss_pred CcCCHHHHHHHHHcCCCEEEEcCC--CCCHHH-HHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEee-CCC
Confidence 347899999999999997766652 221100 0000 012577888999999999996 778865 4 666
No 132
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=45.07 E-value=46 Score=27.02 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCc-EEEecCCCCCC
Q 020317 228 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTT 295 (327)
Q Consensus 228 ~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~-VilDlH~~~PG 295 (327)
.++++.++.+++.|++.|++.+..-.-.. -..++ ....++.+-++++.++++|+. +++=+.. .||
T Consensus 87 ~~~~~~l~~l~~~~~~~i~~~l~s~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~-~~~ 153 (166)
T PF04055_consen 87 LLDEELLDELKKLGVDRIRISLESLDEES--VLRIINRGKSFERVLEALERLKEAGIPRVIIFIVG-LPG 153 (166)
T ss_dssp THCHHHHHHHHHTTCSEEEEEEBSSSHHH--HHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEE-BTT
T ss_pred chhHHHHHHHHhcCccEEecccccCCHHH--hhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-eCC
Confidence 34488999999999999998885321000 00111 224789999999999999998 6666666 555
No 133
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=44.87 E-value=41 Score=31.55 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCC-cchHHHHHHHHHHHHHCCCcEEE
Q 020317 228 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPS 287 (327)
Q Consensus 228 ~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~-~~~~~~ld~~v~wa~~~gl~Vil 287 (327)
.++++.++.++++|++.|-+-+- - ++.-.+-.. ...++..-++++.++++||+|..
T Consensus 120 ~~~~e~l~~Lk~aG~~~v~i~~E-~---~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 120 LLDPEQAKRLKDAGLDYYNHNLD-T---SQEFYSNIISTHTYDDRVDTLENAKKAGLKVCS 176 (296)
T ss_pred CCCHHHHHHHHHcCCCEEEEccc-C---CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 67899999999999988876653 1 110000111 13677777899999999998754
No 134
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=44.29 E-value=31 Score=35.04 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCC-cchHHHHHHHHHHHHHCCCcEEEec-CCCCCCC
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDI-TISVTTS 296 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~-~~~~~~ld~~v~wa~~~gl~VilDl-H~~~PG~ 296 (327)
++++.++.++++|++.|-+.+- ...+. .-.-+. ....+.+.+++++|+++||.|..++ -+ .||-
T Consensus 285 ~~~e~l~~l~~aG~~~v~iGiE--S~s~~-~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiG-lPge 350 (472)
T TIGR03471 285 VDYETLKVMKENGLRLLLVGYE--SGDQQ-ILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILG-LPGE 350 (472)
T ss_pred CCHHHHHHHHHcCCCEEEEcCC--CCCHH-HHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEe-CCCC
Confidence 6889999999999997766552 11100 000000 1146778889999999999988884 45 6653
No 135
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=43.11 E-value=45 Score=30.98 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.-++..+.+|++.|+++-. ...... ..+.......+.|.++++.|+++|+.+.|=.|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~-~~~~~~-~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGY-DVYYEE-HDEETRRRFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHhCCCEEEecCc-ccccCc-CCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 35567778999999998742 111010 001111235678889999999999999998875
No 136
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.48 E-value=56 Score=30.85 Aligned_cols=49 Identities=27% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.++|++...+.|+..|||=+.- ..++.+.++++.|+++|+.|...+..
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDAL--------------NDVRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecC--------------ChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45788999899999999983311 13788899999999999999876653
No 137
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=42.44 E-value=29 Score=34.46 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=42.5
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCcEEEecCCCCCCC
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDITISVTTS 296 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~VilDlH~~~PG~ 296 (327)
..++++.++.++++|+|-|-|-+ ..+.+.. -+-. .....+.+.++++++++.+..|-+|+=--+||-
T Consensus 118 ~~~~~e~L~~l~~~GvnrisiGv--QS~~~~~-L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 118 GTFEAEKFAQFRASGVNRLSIGI--QSFNDAH-LKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred CCCCHHHHHHHHHcCCCeEEEec--ccCCHHH-HHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 34678999999999999665555 2221100 0000 012456778889999998888888874316663
No 138
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.25 E-value=42 Score=31.01 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.-++.-+.+|+..||+| ++.....+. .+.......+.|+++++.|+++||++.|=.|.
T Consensus 98 ~~i~~a~~lG~~~v~~~-~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLA-GYDVYYEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHhCCCEEEEC-Ccccccccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 44556678999999987 321111110 00111224577888999999999999987775
No 139
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=41.65 E-value=29 Score=32.31 Aligned_cols=58 Identities=17% Similarity=0.041 Sum_probs=39.3
Q ss_pred CHHHHHHHHHcCCCEEEeccccc--cccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGWW--MASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~yw--~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.++|++...+.|+..||+.++-. +..... .--....++.+.++++.|++.|++|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~--~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKL--GKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 46899998899999999876421 111000 00012367888899999999999887544
No 140
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=40.36 E-value=37 Score=32.11 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=42.7
Q ss_pred CHHHHHHHHHcCCCEEEeccccc--cccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGWW--MASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~yw--~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.++|++...+.|+..|++++.-. +.... ..--....++.+.+++++|+++|++|.+.+=.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~--~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~ 136 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKN--INCSIAESLERFEPVAELAKAAGLRVRGYVST 136 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH--cCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 47899999999999999887521 11100 01111346888999999999999999877664
No 141
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.22 E-value=71 Score=31.26 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=36.7
Q ss_pred CHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.+|++...+.|+..|||.+..- ..+.+.+.+++|++.|+.|.+.+=.
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 56889998999999999987321 1345788889999999888876543
No 142
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=39.26 E-value=77 Score=30.96 Aligned_cols=48 Identities=13% Similarity=0.037 Sum_probs=36.5
Q ss_pred CHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.+|++...+.|+..|||.+..- ..+.+.+.++++++.|+.|...+=.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~~ 136 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLMM 136 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 56889988899999999987321 1245678899999999988765543
No 143
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.60 E-value=44 Score=31.00 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.-++..+.+|+.+|+++- +...... ..+.......+.|+++++.|+++|+.+.|-.|.
T Consensus 102 ~~~i~~a~~lG~~~i~~~~-~~~~~~~-~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAG-YDVYYEQ-ANNETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHcCCCEEEECC-ccccccc-cHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 3456777899999999863 2100010 000111124577888999999999999988885
No 144
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=38.30 E-value=29 Score=33.77 Aligned_cols=38 Identities=13% Similarity=-0.040 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEecCCCCCCCCCCCCCCCCC
Q 020317 268 LRALDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGGPV 306 (327)
Q Consensus 268 ~~~ld~~v~wa~~~gl~VilDlH~~~PG~qn~~~~sG~~ 306 (327)
...+|++.++|+++||.||-|.-. +.|+.-.....|..
T Consensus 126 ~~d~~~i~~~~~~~~i~lIeD~a~-a~g~~~~g~~~G~~ 163 (363)
T PF01041_consen 126 PADMDAIRAIARKHGIPLIEDAAQ-AFGARYKGRPVGSF 163 (363)
T ss_dssp ---HHHHHHHHHHTT-EEEEE-TT-TTT-EETTEETTSS
T ss_pred cccHHHHHHHHHHcCCcEEEcccc-ccCceeCCEeccCC
Confidence 346899999999999999999999 88876544555554
No 145
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=37.86 E-value=44 Score=36.40 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCEEE-ecc---------ccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 233 DFKFIAGNGLNAVR-IPV---------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 233 Df~~i~~~G~n~VR-iPi---------~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
-+.++++.|+.|+= -|| ||- +.|++.-+|-. |+.+-|.+++.-+++.||.+|+|+=
T Consensus 24 ~l~yl~~LGIShLY~SPIftA~pGStHGYD-VvD~t~InPeL-GG~egl~rLvaalk~~GlGlI~DIV 89 (889)
T COG3280 24 LLDYLADLGISHLYLSPIFTARPGSTHGYD-VVDPTEINPEL-GGEEGLERLVAALKSRGLGLIVDIV 89 (889)
T ss_pred hhHHHHhcCchheeccchhhcCCCCCCCcc-CCCccccChhh-cChHHHHHHHHHHHhcCCceEEEec
Confidence 34567899999886 344 132 22222223322 4788899999999999999999983
No 146
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=37.68 E-value=41 Score=32.08 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=40.9
Q ss_pred CHHHHHHHHHcCCCEEEeccc--cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~--yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
...|++.-.+.|+..||+.++ -.+.... ..--....++.+.++|++|+++|++|...+-
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n--~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKN--INCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHH--hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 468999988999999997764 2211110 0011224688899999999999999975444
No 147
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=36.85 E-value=64 Score=29.63 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+-++..+..|+.+|++|.++.. .+. ..+.......+.|+++.+.|+++|+.+.|=-|.
T Consensus 89 ~~i~~a~~lga~~i~~~~g~~~-~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 89 AAIRYARALGNKKINCLVGKTP-AGF-SSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHhCCCEEEECCCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4455667889999999887531 110 001111123467788899999999998887665
No 148
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=36.79 E-value=39 Score=33.32 Aligned_cols=59 Identities=10% Similarity=-0.024 Sum_probs=41.2
Q ss_pred CHHHHHHHHHcCCCEEEeccc--cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~--yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
.++|++...+.|+..||+.++ -.+.... ..--....++.+.++++.|+++|++|.+.+=
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~--~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYK--LKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHH--hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 478999999999999998554 2211100 0001123688899999999999999988763
No 149
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=36.60 E-value=1.1e+02 Score=24.24 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHcC-CCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEE
Q 020317 228 YIVEDDFKFIAGNG-LNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPS 287 (327)
Q Consensus 228 ~ite~Df~~i~~~G-~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~Vil 287 (327)
..+..||+.+.+.| ++.|++=+. ..+++....++.++|+++|+.+.+
T Consensus 4 ~~~~~~~~~li~~~a~d~~~~~~~-------------~~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 4 LFSLHDFRRLIEAGAVDIVQIDPT-------------RCGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp SSSHHHHHHHHHTTSCSEEEEBHH-------------HHTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCHHHHHHHHHcCCCCEEEeCch-------------hcCCHHHHHHHHHHHHHhCCCEEe
Confidence 45668888877665 455544332 235789999999999999999876
No 150
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=36.59 E-value=88 Score=30.62 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHcCCCEEEeccc
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVG 250 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~ 250 (327)
+|++.++.+++.|++.|+|.+.
T Consensus 102 l~~~~~~~L~~~g~~~v~iSld 123 (378)
T PRK05301 102 LTEARLAALKDAGLDHIQLSFQ 123 (378)
T ss_pred CCHHHHHHHHHcCCCEEEEEec
Confidence 5666677777777777777664
No 151
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=36.33 E-value=1e+02 Score=28.06 Aligned_cols=57 Identities=11% Similarity=-0.036 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 233 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 233 Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
-++..++.|...||++.+... .+. +.+.......+.|.++.+.|+++||.+.|-.|.
T Consensus 89 ~i~~a~~lg~~~i~~~~g~~~-~~~-~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 89 AIAYARALGCPQVNCLAGKRP-AGV-SPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHhCCCEEEECcCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 456667889999999876431 010 000011123466888999999999999998775
No 152
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=35.98 E-value=66 Score=30.48 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=25.0
Q ss_pred CCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 263 YVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 263 ~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.....|+.+|++++.|+..-=.+|+|+|+
T Consensus 124 ~~d~PF~~~d~l~~~~~~~~~~iiVDFHA 152 (266)
T COG1692 124 ALDNPFKAADKLLDEIKLGTDLIIVDFHA 152 (266)
T ss_pred ccCCHHHHHHHHHHhCccCCceEEEEccc
Confidence 34567999999999998887789999998
No 153
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=35.94 E-value=34 Score=32.20 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHHHCCCcEE
Q 020317 265 GGSLRALDNAFTWAGYAFFPVP 286 (327)
Q Consensus 265 ~~~~~~ld~~v~wa~~~gl~Vi 286 (327)
..+++.+.++|..|++.||++|
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtI 113 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTI 113 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeE
Confidence 3489999999999999999987
No 154
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=35.37 E-value=31 Score=31.55 Aligned_cols=52 Identities=6% Similarity=-0.024 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
.+.+...++|.+-|-+-+.|...... ......+.+.++++.|+++||+|||-
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~-----~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSG-----NEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTT-----HHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHcCCceeeeeccccccccc-----cHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666779999999998877544321 12236899999999999999999997
No 155
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=34.96 E-value=35 Score=34.55 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.-+.+++++++|++|+++||.|=.=
T Consensus 218 s~e~l~~l~~~~~~~~i~lI~DEiY 242 (447)
T PLN02607 218 QRSVLEDILDFVVRKNIHLVSDEIY 242 (447)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccc
Confidence 4688999999999999999999653
No 156
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=34.78 E-value=98 Score=29.56 Aligned_cols=65 Identities=14% Similarity=0.305 Sum_probs=41.0
Q ss_pred ccCCHHHHH----HHHHcCCCEEEeccc----cccccCC-----C---------CCCCCCcchHHHHHHHHHHHHHCCCc
Q 020317 227 TYIVEDDFK----FIAGNGLNAVRIPVG----WWMASDP-----T---------PPAPYVGGSLRALDNAFTWAGYAFFP 284 (327)
Q Consensus 227 ~~ite~Df~----~i~~~G~n~VRiPi~----yw~~~~~-----~---------~~~p~~~~~~~~ld~~v~wa~~~gl~ 284 (327)
.|++.+.++ .|+..++|.+.+=+. |. ++-. . ....++ .-+.++++++.|+++||.
T Consensus 11 ~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~-le~~~~p~l~~~g~~~~~~~~~~~y--T~~di~elv~yA~~rgI~ 87 (303)
T cd02742 11 HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWR-IESKKFPELAEKGGQINPRSPGGFY--TYAQLKDIIEYAAARGIE 87 (303)
T ss_pred cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCce-EeeCccchhhhhcccccCCCCCCeE--CHHHHHHHHHHHHHcCCE
Confidence 455555544 567889999865543 21 1100 0 011122 468999999999999999
Q ss_pred EEEecCCCCCCC
Q 020317 285 VPSDITISVTTS 296 (327)
Q Consensus 285 VilDlH~~~PG~ 296 (327)
||.-+=. ||-
T Consensus 88 viPEiD~--PGH 97 (303)
T cd02742 88 VIPEIDM--PGH 97 (303)
T ss_pred EEEeccc--hHH
Confidence 9988843 553
No 157
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=33.99 E-value=1.1e+02 Score=29.62 Aligned_cols=18 Identities=6% Similarity=-0.210 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHCCCcE
Q 020317 268 LRALDNAFTWAGYAFFPV 285 (327)
Q Consensus 268 ~~~ld~~v~wa~~~gl~V 285 (327)
.+.++++++++++.|+..
T Consensus 159 ~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 159 IDQIPEIIELAIELGADR 176 (358)
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 455666666666666553
No 158
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.68 E-value=1.4e+02 Score=28.07 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=36.4
Q ss_pred HHHcCCCEEEeccccccccCCCCCCCC--CcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 237 IAGNGLNAVRIPVGWWMASDPTPPAPY--VGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 237 i~~~G~n~VRiPi~yw~~~~~~~~~p~--~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.++.|++.+|=-. | ++. ..|| ..-+.+-|+.+.+.|+++||.++-|+|.
T Consensus 38 ~~~~g~~~~r~g~--~---kpR-ts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 38 AKKLGYNYFRGGA--Y---KPR-TSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred HHHcCCCEEEecc--c---CCC-CCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 6788998888543 1 221 2344 3226788999999999999999999997
No 159
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=33.63 E-value=96 Score=29.64 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
++-|++++++|+.-|+|=+ . .. ..+...+..+++++-|.+|. ++||+|+
T Consensus 109 ~~~f~~~~~~Gv~GvKidF--~--~~------d~Q~~v~~y~~i~~~AA~~~--LmvnfHg 157 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF--M--DR------DDQEMVNWYEDILEDAAEYK--LMVNFHG 157 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE------SS------TSHHHHHHHHHHHHHHHHTT---EEEETT
T ss_pred HHHHHHHHHcCCCEEeeCc--C--CC------CCHHHHHHHHHHHHHHHHcC--cEEEecC
Confidence 6889999999999888644 2 11 11235788899999999986 5889998
No 160
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=33.41 E-value=44 Score=32.73 Aligned_cols=29 Identities=10% Similarity=-0.092 Sum_probs=23.9
Q ss_pred CCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 261 APYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 261 ~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+|. ..-+|+|.+++.|++|+|.||+=-+.
T Consensus 47 eP~--~~~~yv~~~l~~C~~~~Idv~~P~~~ 75 (329)
T PF15632_consen 47 EPA--DGEEYVDWCLDFCKEHGIDVFVPGRN 75 (329)
T ss_pred cCC--CHHHHHHHHHHHHHHhCCeEEEcCcc
Confidence 455 46899999999999999999985543
No 161
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=33.38 E-value=38 Score=33.34 Aligned_cols=23 Identities=9% Similarity=-0.197 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-+++++++++|++||+.+|+|=
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DE 225 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDE 225 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 46899999999999999999983
No 162
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=33.16 E-value=42 Score=33.01 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|++|++.||+|=-
T Consensus 197 s~~~~~~l~~~a~~~~~~iI~De~ 220 (416)
T PRK09440 197 TDEELEKLDALARQHNIPLLIDNA 220 (416)
T ss_pred CHHHHHHHHHHHHHcCCcEEEeCC
Confidence 578999999999999999999954
No 163
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=32.56 E-value=56 Score=33.54 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=40.1
Q ss_pred CHHHHHHHHHcCCCEEEeccccccccCCCCCCCCC-cchHHHHHHHHHHHHHCCCcEEEe-cCCCCCCC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSD-ITISVTTS 296 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~-~~~~~~ld~~v~wa~~~gl~VilD-lH~~~PG~ 296 (327)
+++-++.++++|++.|-|-+ ....+. .-+-+. ....+...+++++++++||.+..+ |-+ .||-
T Consensus 286 d~ell~~l~~aG~~~v~iGi--ES~~~~-~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G-~P~e 350 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGT--EAAAQA-TLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG-FENE 350 (497)
T ss_pred CHHHHHHHHHhCCcEEEEcc--ccCCHH-HHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE-CCCC
Confidence 56678888999997665544 322110 000011 125677889999999999998888 456 6663
No 164
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=32.22 E-value=55 Score=32.48 Aligned_cols=58 Identities=17% Similarity=0.059 Sum_probs=41.3
Q ss_pred CHHHHHHHHHcCCCEEEeccccc--cccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGWW--MASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~yw--~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.++|++...+.|+..||+.++-. +.... ...-....++.+.++++.|+++|+.|.+..
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~--~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHK--LKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHH--hCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36899999999999999876522 11110 001123478999999999999999998863
No 165
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=32.21 E-value=46 Score=31.66 Aligned_cols=25 Identities=20% Similarity=0.004 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||+|-.-
T Consensus 166 ~~~~l~~l~~~~~~~~~~ii~De~y 190 (363)
T PF00155_consen 166 SLEELRELAELAREYNIIIIVDEAY 190 (363)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred ccccccchhhhhcccccceeeeece
Confidence 5799999999999999999999776
No 166
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=32.08 E-value=88 Score=32.00 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=40.7
Q ss_pred CCCchhhhhh-cccccCCHHHHHHHH-HcCCCEEEeccccccccCCCCCCCCCc--------chHHHHHHHHHHHHHCCC
Q 020317 214 GPQKAPQVMR-HWSTYIVEDDFKFIA-GNGLNAVRIPVGWWMASDPTPPAPYVG--------GSLRALDNAFTWAGYAFF 283 (327)
Q Consensus 214 G~~~a~~~l~-~~~~~ite~Df~~i~-~~G~n~VRiPi~yw~~~~~~~~~p~~~--------~~~~~ld~~v~wa~~~gl 283 (327)
|...+...|+ .+. ..+..+. +.||..||+ ++.+.++. ..+.. =.|.+||++++...++||
T Consensus 29 ~~g~a~~~l~~~~q-----~~l~~~~~~~gf~yvR~---h~l~~ddm--~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~ 98 (486)
T PF01229_consen 29 GSGRANLLLRADWQ-----EQLRELQEELGFRYVRF---HGLFSDDM--MVYSESDEDGIPPYNFTYLDQILDFLLENGL 98 (486)
T ss_dssp EES-GGGGGBHHHH-----HHHHHHHCCS--SEEEE---S-TTSTTT--T-EEEEETTEEEEE--HHHHHHHHHHHHCT-
T ss_pred CCCchHHHhhHHHH-----HHHHHHHhccCceEEEE---EeeccCch--hhccccccCCCCcCChHHHHHHHHHHHHcCC
Confidence 3445566666 553 4566665 779999997 44442221 11111 159999999999999999
Q ss_pred cEEEecCCCCC
Q 020317 284 PVPSDITISVT 294 (327)
Q Consensus 284 ~VilDlH~~~P 294 (327)
+-+|.|=- .|
T Consensus 99 ~P~vel~f-~p 108 (486)
T PF01229_consen 99 KPFVELGF-MP 108 (486)
T ss_dssp EEEEEE-S-B-
T ss_pred EEEEEEEe-ch
Confidence 99999986 55
No 167
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=31.93 E-value=48 Score=31.51 Aligned_cols=59 Identities=7% Similarity=0.040 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEeccc--cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~--yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.+++...+.|+..|++.++ -.+.... ...-....++.+.++++.|+++|++|.+.+=.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~--~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQ--LRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHH--HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 46788888999999997763 2222110 01112347899999999999999999887743
No 168
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=31.87 E-value=44 Score=33.84 Aligned_cols=25 Identities=24% Similarity=0.089 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.|+++.+.|++|||.||+|--.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaAr 195 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAAR 195 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEchh
Confidence 4788999999999999999999765
No 169
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=31.84 E-value=43 Score=34.37 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCCCCCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITISVTT 295 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~~~PG 295 (327)
+.+.++++-+.|++|||+||+|--. +-|
T Consensus 196 s~~~m~~I~elA~~~Gl~Vi~DaAr-a~g 223 (460)
T PRK13237 196 SMANMRAVRELCDKHGIKVFFDATR-CVE 223 (460)
T ss_pred CHHhHHHHHHHHHHcCCEEEEECcc-hhc
Confidence 3678999999999999999999866 444
No 170
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=31.73 E-value=94 Score=26.36 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=33.4
Q ss_pred ccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCC-CcEEE
Q 020317 227 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAF-FPVPS 287 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~g-l~Vil 287 (327)
..++++.++.+++.|+..|.+-+.-..-.......+ ...++.+.++++.++++| +.|-+
T Consensus 96 ~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~g~~~v~~ 155 (216)
T smart00729 96 GTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR--GHTVEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred ccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC--CCCHHHHHHHHHHHHHhCCcceEE
Confidence 356678888888888887777664221000000001 124677777777777777 54443
No 171
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.35 E-value=49 Score=32.59 Aligned_cols=58 Identities=17% Similarity=0.035 Sum_probs=39.8
Q ss_pred CHHHHHHHHHcCCCEEEecccccc--ccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGWWM--ASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~yw~--~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.++|++...+.|+..|||.++-.. ..... .--....++.+.++++.|+++|++|.+.+
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~--~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKL--RKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHh--CcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 478999999999999998775221 11000 00012367888899999999999987653
No 172
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=31.13 E-value=43 Score=34.04 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|++|++.||.|=.
T Consensus 209 s~e~l~~ll~~a~~~~~~iI~DE~ 232 (468)
T PLN02450 209 TRTELNLLVDFITAKNIHLISDEI 232 (468)
T ss_pred CHHHHHHHHHHHHHCCcEEEEEcc
Confidence 578999999999999999999954
No 173
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=30.95 E-value=53 Score=29.81 Aligned_cols=50 Identities=16% Similarity=-0.062 Sum_probs=35.5
Q ss_pred HHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 234 FKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 234 f~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.+...+.|+..|=+-+..-.. + ....++.+.++.+.|+++|+++|||.|.
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~~-------~-~~~~~~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGSE-------E-EREMLEELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHCCCCEEEEEEecCCc-------h-HHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 556678899877433321110 1 1236889999999999999999999987
No 174
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=30.94 E-value=59 Score=32.10 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=41.9
Q ss_pred CHHHHHHHHHcCCCEEEeccc--cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~--yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
.++|++...+.|+..|++.++ -.+.... ..--....++.+.++|+.|+++|++|...+-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n--~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSN--INCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH--hCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 579999999999999997764 1111100 0011234789999999999999999975554
No 175
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.71 E-value=1.9e+02 Score=28.00 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=40.7
Q ss_pred ccCCHHHHH----HHHHcCCCEEEecc----ccccccCCC-------CCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 227 TYIVEDDFK----FIAGNGLNAVRIPV----GWWMASDPT-------PPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 227 ~~ite~Df~----~i~~~G~n~VRiPi----~yw~~~~~~-------~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.|++.+.++ .|+..++|.+-+=+ +|..-.... ....++ .-+.++.+++.|+++||.||.-+=.
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y--T~~di~elv~yA~~rgI~vIPEId~ 90 (311)
T cd06570 13 HFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY--TQEQIREVVAYARDRGIRVVPEIDV 90 (311)
T ss_pred CCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc--CHHHHHHHHHHHHHcCCEEEEeecC
Confidence 355555544 45777999775443 122110100 011223 4688999999999999999988844
Q ss_pred CCCCCC
Q 020317 292 SVTTSQ 297 (327)
Q Consensus 292 ~~PG~q 297 (327)
||-.
T Consensus 91 --PGH~ 94 (311)
T cd06570 91 --PGHA 94 (311)
T ss_pred --ccch
Confidence 6643
No 176
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=30.57 E-value=44 Score=32.20 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|+++|+.||+|=.
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~ 183 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDEC 183 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecc
Confidence 468899999999999999999954
No 177
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=30.41 E-value=52 Score=31.43 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+++.|+++++++++.|+.||+|+--
T Consensus 71 G~~~l~~~i~~l~~~g~~VilD~K~ 95 (278)
T PRK00125 71 GLAQLERTIAYLREAGVLVIADAKR 95 (278)
T ss_pred hhhHHHHHHHHHHHCCCcEEEEeec
Confidence 6889999999999999999999853
No 178
>PRK08175 aminotransferase; Validated
Probab=30.32 E-value=46 Score=32.52 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|++||+.||+|-.
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~ 205 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLA 205 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecc
Confidence 578899999999999999999953
No 179
>PRK05942 aspartate aminotransferase; Provisional
Probab=30.21 E-value=44 Score=32.71 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|++||+.||+|=.
T Consensus 188 s~~~~~~i~~~a~~~~~~iI~De~ 211 (394)
T PRK05942 188 PREFFEEIVAFARKYEIMLVHDLC 211 (394)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecc
Confidence 578899999999999999999965
No 180
>PRK09389 (R)-citramalate synthase; Provisional
Probab=29.60 E-value=61 Score=33.45 Aligned_cols=60 Identities=12% Similarity=-0.115 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
++|++...+.|...|++.+.-+...-.....--....++.+.++++.|+++|+.|.+++=
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e 135 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE 135 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 689999999999999988864322100000011124688888999999999999988764
No 181
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=29.57 E-value=75 Score=30.44 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=38.6
Q ss_pred ccCCHHHH----HHHHHcCCCEEEeccc----cccccCCCC-------CCC-----CCcchHHHHHHHHHHHHHCCCcEE
Q 020317 227 TYIVEDDF----KFIAGNGLNAVRIPVG----WWMASDPTP-------PAP-----YVGGSLRALDNAFTWAGYAFFPVP 286 (327)
Q Consensus 227 ~~ite~Df----~~i~~~G~n~VRiPi~----yw~~~~~~~-------~~p-----~~~~~~~~ld~~v~wa~~~gl~Vi 286 (327)
.|++-+.+ +.|+..++|.+-+-+. |..-....| ..+ ++ .-+.++++|+.|+++||.||
T Consensus 13 ~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~y--T~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 13 HFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYY--TKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp S-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEB--EHHHHHHHHHHHHHTT-EEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccC--CHHHHHHHHHHHHHcCCcee
Confidence 45544444 4567889999977663 221111100 011 22 36899999999999999999
Q ss_pred EecCCCCCCCC
Q 020317 287 SDITISVTTSQ 297 (327)
Q Consensus 287 lDlH~~~PG~q 297 (327)
.-+=. ||-.
T Consensus 91 Peid~--PGH~ 99 (351)
T PF00728_consen 91 PEIDT--PGHA 99 (351)
T ss_dssp EEEEE--SSS-
T ss_pred eeccC--chHH
Confidence 88844 5543
No 182
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=29.40 E-value=50 Score=30.70 Aligned_cols=25 Identities=20% Similarity=-0.003 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+.+++++|+++|+.||+|--.
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~ 174 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAY 174 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecch
Confidence 4678889999999999999999844
No 183
>PRK04302 triosephosphate isomerase; Provisional
Probab=29.04 E-value=1.7e+02 Score=26.51 Aligned_cols=52 Identities=8% Similarity=-0.159 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 228 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 228 ~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
|..+.-.+++++.|++.|=+|-.=+. . .++.+.+.++.|+++||.+|++.|.
T Consensus 72 ~tg~~~~~~l~~~G~~~vii~~ser~-------~-----~~~e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 72 HTGHILPEAVKDAGAVGTLINHSERR-------L-----TLADIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred chhhhHHHHHHHcCCCEEEEeccccc-------c-----CHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 33344467888999998855543211 1 2455888999999999999999997
No 184
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=28.93 E-value=50 Score=31.78 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++|+.||+|=.-
T Consensus 166 ~~~~~~~i~~~a~~~~~~ii~De~y 190 (364)
T PRK07865 166 GVDHLRKVVAWARERGAVVASDECY 190 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecch
Confidence 4688999999999999999999754
No 185
>PRK07094 biotin synthase; Provisional
Probab=28.92 E-value=79 Score=30.17 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCC--CCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDP--TPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~--~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
.++++++.++++|++.|-+.+ ....+. ....| ...++..-+++++++++|+.|-.+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~gl--Es~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRH--ETADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCHHHHHHHHHcCCCEEEecc--ccCCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecce
Confidence 567889999999988765433 211000 00111 125677777888888888876444
No 186
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=28.86 E-value=51 Score=32.11 Aligned_cols=23 Identities=9% Similarity=-0.217 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++++++.++|++||+.+|+|=
T Consensus 194 ~~~~l~~l~~l~~~~g~~lI~DE 216 (389)
T PRK01278 194 PDEFLKGLRQLCDENGLLLIFDE 216 (389)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 46899999999999999999995
No 187
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=28.78 E-value=50 Score=33.92 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++|+++||.|=
T Consensus 217 s~e~l~~L~~~a~~~~i~lI~DE 239 (496)
T PLN02376 217 DKDTLTNLVRFVTRKNIHLVVDE 239 (496)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 57899999999999999999996
No 188
>PRK05957 aspartate aminotransferase; Provisional
Probab=28.72 E-value=50 Score=32.27 Aligned_cols=25 Identities=12% Similarity=-0.209 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++||+.||+|-.-
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De~y 202 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDEAY 202 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4678999999999999999999863
No 189
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=28.28 E-value=1.5e+02 Score=27.81 Aligned_cols=49 Identities=24% Similarity=0.135 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
++.++.+++.||++|=|--++-.+ ..+...++|+.++++|++|+--++.
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~i------------~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSMEI------------SLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCC------------CHHHHHHHHHHHHhCCCeEeccccc
Confidence 456778899999999887765432 2455667888888888888876665
No 190
>PRK07681 aspartate aminotransferase; Provisional
Probab=28.24 E-value=50 Score=32.35 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||+|=.-
T Consensus 184 s~~~~~~i~~~a~~~~~~iI~De~y 208 (399)
T PRK07681 184 HEDFFKEVIAFAKKHNIIVVHDFAY 208 (399)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 5788999999999999999999754
No 191
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.19 E-value=96 Score=28.51 Aligned_cols=58 Identities=10% Similarity=-0.036 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.-++.-+..|+.+|+++-+.-.... ..+.......+.|+++.+.|+++||.+.+--|.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYLT--PPNVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 4456667889999999654211100 111112235678999999999999998888775
No 192
>PLN02368 alanine transaminase
Probab=28.13 E-value=53 Score=32.79 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++|++.||.|=
T Consensus 228 s~e~l~~l~~~a~~~~~~II~DE 250 (407)
T PLN02368 228 SEANLREILKFCYQERLVLLGDE 250 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 57999999999999999999994
No 193
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=27.91 E-value=48 Score=31.19 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=36.8
Q ss_pred ccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 225 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 225 ~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
|+.-+.|.||...++.|+..|= . .|-..|++++..+.|+.|+.+||..+|.
T Consensus 213 WDEs~readF~~e~e~gv~avV--------I-----KPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 213 WDESLREADFAFEAEPGVRAVV--------I-----KPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred ecchhcccccccccCCCceEEE--------e-----cccchhhHHHHHHHHHHHHhcCceeEee
Confidence 5555556666666666665552 1 2444579999999999999999999886
No 194
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.88 E-value=1.4e+02 Score=28.73 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCCCCCCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITISVTTS 296 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~~~PG~ 296 (327)
..+.++++++.|+++||.||.-+=. ||-
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~--PGH 107 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDS--PGH 107 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCC--cHH
Confidence 4789999999999999999987743 554
No 195
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=27.83 E-value=56 Score=33.47 Aligned_cols=25 Identities=16% Similarity=-0.035 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.+.++++.+.|++|||.|++|--.
T Consensus 189 s~~~l~~I~elA~~~Gl~vi~DaAR 213 (450)
T TIGR02618 189 SMANMREVRELCEAHGIKVFYDATR 213 (450)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccc
Confidence 4688999999999999999999855
No 196
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=27.77 E-value=1.5e+02 Score=27.50 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.+|++...+.|+..|||.+.-- ....+.+++++|++.|+.|.+.+
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCCeEEEEE
Confidence 5889888899999999866211 13456778888888888887766
No 197
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.75 E-value=1e+02 Score=31.23 Aligned_cols=55 Identities=18% Similarity=-0.024 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCEEEeccc---cccc---cCC-CCCCCCC---cchHHHHHHHHHHHHHCCCcEE
Q 020317 232 DDFKFIAGNGLNAVRIPVG---WWMA---SDP-TPPAPYV---GGSLRALDNAFTWAGYAFFPVP 286 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~---yw~~---~~~-~~~~p~~---~~~~~~ld~~v~wa~~~gl~Vi 286 (327)
+-++.+..+|+|+|=.-|. |=.. .-+ ...-|++ ..+++-|..+|+.|+|+||.|+
T Consensus 68 ~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~ 132 (418)
T COG1649 68 DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVH 132 (418)
T ss_pred HHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeee
Confidence 6678889999999976552 2111 111 1122332 3479999999999999999997
No 198
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=27.62 E-value=85 Score=29.94 Aligned_cols=26 Identities=12% Similarity=-0.041 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 266 GSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 266 ~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
|...-++++.++|+++|+.|++|-=.
T Consensus 152 G~~~~~~~I~~l~~~~~~~~ivD~a~ 177 (353)
T TIGR03235 152 GSIQPIREIAEVLEAHEAFFHVDAAQ 177 (353)
T ss_pred eeccCHHHHHHHHHHcCCEEEEEchh
Confidence 44555899999999999999999854
No 199
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.48 E-value=1.9e+02 Score=27.69 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEecccc-ccccCCCCCCCCC---cc--hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 233 DFKFIAGNGLNAVRIPVGW-WMASDPTPPAPYV---GG--SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 233 Df~~i~~~G~n~VRiPi~y-w~~~~~~~~~p~~---~~--~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
-++.++..|+|.+-+=+.- +.+. ..|.. .+ .-+.++++++.|+++||.||.-+=.
T Consensus 22 ~id~ma~~k~N~l~lhl~D~f~~~----~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~ 82 (301)
T cd06565 22 LLRLLALLGANGLLLYYEDTFPYE----GEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQT 82 (301)
T ss_pred HHHHHHHcCCCEEEEEEecceecC----CCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCC
Confidence 3455688899999765421 1111 12221 11 4789999999999999999988754
No 200
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=27.44 E-value=49 Score=30.62 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.|+.+|++++||+++||+| .-|.
T Consensus 14 n~~~~D~~~~~a~~~gi~v--~gH~ 36 (254)
T smart00633 14 NFSGADAIVNFAKENGIKV--RGHT 36 (254)
T ss_pred ChHHHHHHHHHHHHCCCEE--EEEE
Confidence 5999999999999999998 4554
No 201
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=27.40 E-value=56 Score=31.12 Aligned_cols=25 Identities=8% Similarity=-0.310 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++|+.||+|---
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y 167 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAF 167 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECcc
Confidence 6889999999999999999999854
No 202
>PRK09265 aminotransferase AlaT; Validated
Probab=27.21 E-value=56 Score=32.06 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|+++|+.||+|=
T Consensus 186 ~~~~~~~i~~~a~~~~~~ii~De 208 (404)
T PRK09265 186 SKELLEEIVEIARQHNLIIFADE 208 (404)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeh
Confidence 46889999999999999999994
No 203
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=27.21 E-value=35 Score=32.59 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCCcEEEecCC
Q 020317 271 LDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 271 ld~~v~wa~~~gl~VilDlH~ 291 (327)
++.++..|++.||.|++|.|.
T Consensus 192 ~~d~L~ic~~~giP~VfD~hH 212 (275)
T PF03851_consen 192 VEDVLPICEKLGIPMVFDYHH 212 (275)
T ss_dssp HHHHHHHHHHHT--EEEEHHH
T ss_pred HHHHHHHHHHhCCCEEEEhHH
Confidence 778899999999999999996
No 204
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.18 E-value=67 Score=28.39 Aligned_cols=44 Identities=14% Similarity=-0.028 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 233 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 233 Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+++..+++|.+.|=++. +. | -..+.++++.|+++|+++++++++
T Consensus 68 ~~~~~~~~Gad~i~vh~-----~~-----~-----~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLG-----VA-----D-----DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEec-----cC-----C-----HHHHHHHHHHHHHcCCEEEEEecC
Confidence 56777889988886553 11 1 245788999999999999999987
No 205
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=27.17 E-value=1.7e+02 Score=28.46 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCCCCCCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITISVTTS 296 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~~~PG~ 296 (327)
..+.++++++.|+++||.||.-+=. ||-
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~--PGH 100 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDM--PGH 100 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCC--cHH
Confidence 4788999999999999999988843 553
No 206
>PRK08960 hypothetical protein; Provisional
Probab=27.12 E-value=60 Score=31.59 Aligned_cols=23 Identities=13% Similarity=-0.286 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++||+.||+|=
T Consensus 183 ~~~~~~~l~~~~~~~~~~li~De 205 (387)
T PRK08960 183 SRDELAALSQALRARGGHLVVDE 205 (387)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 57899999999999999999995
No 207
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=27.08 E-value=75 Score=31.00 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=24.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 259 PPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 259 ~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
|.+|. .....++++++.|+++|+.||+|--
T Consensus 145 P~NP~--~~~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 145 PTNPL--MQETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred CCCCC--CcHHHHHHHHHHHHHcCCEEEEECC
Confidence 34563 3578899999999999999999954
No 208
>PRK08354 putative aminotransferase; Provisional
Probab=26.99 E-value=53 Score=31.00 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++|+.||+|=.-
T Consensus 135 ~~~~l~~l~~~a~~~~~~li~De~y 159 (311)
T PRK08354 135 NFKELKPLLDAVEDRNALLILDEAF 159 (311)
T ss_pred CHHHHHHHHHHhhhcCcEEEEeCcc
Confidence 5789999999999999999999743
No 209
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.95 E-value=1.9e+02 Score=29.85 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
-|.+..+.+.++|++.||+=||-=...........-..++..+.++.+.|+++|+.||-|=+
T Consensus 277 ~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~gg 338 (479)
T PRK07807 277 VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGG 338 (479)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCC
Confidence 36678888889999999988864222211111122123899999999999999999998844
No 210
>PRK09148 aminotransferase; Validated
Probab=26.91 E-value=57 Score=32.15 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+.+++++|++||+.||+|=.-
T Consensus 183 s~~~l~~l~~~a~~~~~~ii~De~Y 207 (405)
T PRK09148 183 DLDFYKDVVAFAKKHDIIILSDLAY 207 (405)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 5788999999999999999999643
No 211
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=26.80 E-value=53 Score=31.83 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.+|+|-.-
T Consensus 182 ~~~~~~~i~~~a~~~~~~ii~De~y 206 (383)
T TIGR03540 182 PLKFFKELVEFAKEYNIIVCHDNAY 206 (383)
T ss_pred CHHHHHHHHHHHHHcCEEEEEecch
Confidence 5788999999999999999999865
No 212
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.53 E-value=62 Score=29.61 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=18.7
Q ss_pred HHHHHHHHCCC----cEEEecCCCCCCC
Q 020317 273 NAFTWAGYAFF----PVPSDITISVTTS 296 (327)
Q Consensus 273 ~~v~wa~~~gl----~VilDlH~~~PG~ 296 (327)
++++..++|+| +++|||-+ +|||
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGA-APGg 58 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGA-APGG 58 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCC-CCCc
Confidence 35667777765 89999999 9997
No 213
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=26.43 E-value=60 Score=31.32 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++|++.||+|-
T Consensus 159 ~~~~~~~l~~~a~~~~~~ii~De 181 (354)
T PRK06358 159 SKEEMKKILDKCEKRNIYLIIDE 181 (354)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeC
Confidence 57889999999999999999994
No 214
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=26.40 E-value=57 Score=32.08 Aligned_cols=23 Identities=13% Similarity=-0.080 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++|++.||.|=
T Consensus 194 s~~~~~~l~~~a~~~~~~iI~De 216 (409)
T PRK07590 194 TKEQLKAWVDYAKENGSLILFDA 216 (409)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEc
Confidence 57899999999999999999996
No 215
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=26.35 E-value=71 Score=29.97 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCCcEEEecCC
Q 020317 269 RALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 269 ~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+.|.++++.|+++|+-+++|+|.
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~ 169 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHD 169 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCC
Confidence 67999999999999999999998
No 216
>PLN00175 aminotransferase family protein; Provisional
Probab=26.34 E-value=59 Score=32.28 Aligned_cols=25 Identities=8% Similarity=-0.132 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||+|-.-
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y 229 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVY 229 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4688999999999999999999754
No 217
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=26.27 E-value=55 Score=30.81 Aligned_cols=25 Identities=12% Similarity=-0.134 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
....++++.++|+++|+.||+|-=.
T Consensus 147 ~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 147 DIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CccCHHHHHHHHHHcCCEEEEEccc
Confidence 3445788999999999999999765
No 218
>PRK05839 hypothetical protein; Provisional
Probab=26.19 E-value=59 Score=31.60 Aligned_cols=24 Identities=25% Similarity=0.005 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+.+++++|+++|+.||+|=.
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~ 196 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDEC 196 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccc
Confidence 578899999999999999999964
No 219
>PLN02721 threonine aldolase
Probab=26.12 E-value=63 Score=30.54 Aligned_cols=23 Identities=17% Similarity=-0.077 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.++++.+.|++||+.+|+|-
T Consensus 156 ~~~~l~~l~~l~~~~g~~livD~ 178 (353)
T PLN02721 156 SVEYTDKVGELAKRHGLKLHIDG 178 (353)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEc
Confidence 46789999999999999999995
No 220
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=26.04 E-value=52 Score=26.91 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=13.1
Q ss_pred ccCCHHHHHHHHHcCCCEE
Q 020317 227 TYIVEDDFKFIAGNGLNAV 245 (327)
Q Consensus 227 ~~ite~Df~~i~~~G~n~V 245 (327)
.=++++||+.+++.||.+|
T Consensus 13 ~Q~~~~d~~~la~~GfktV 31 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTV 31 (110)
T ss_dssp CS--HHHHHHHHHCT--EE
T ss_pred CCCCHHHHHHHHHCCCcEE
Confidence 3478999999999999888
No 221
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=25.92 E-value=2.2e+02 Score=25.88 Aligned_cols=21 Identities=24% Similarity=0.042 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEE
Q 020317 267 SLRALDNAFTWAGYAFFPVPS 287 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~Vil 287 (327)
.-+.|.++.+.++++|++|+|
T Consensus 191 ~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 191 SSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CHHHHHHHHHHHHHcCCeEEe
Confidence 567888899999999999986
No 222
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=25.86 E-value=1.8e+02 Score=27.84 Aligned_cols=59 Identities=14% Similarity=-0.024 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 233 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 233 Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
-+++-+++|+-.|=|=-+|.........++........|.++++.|++.|++|+|=.|.
T Consensus 37 yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 37 YIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp HHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred HHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 34555799999998866664322111112222224577999999999999999999998
No 223
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=25.69 E-value=87 Score=29.48 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEeccc--cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 231 EDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~--yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
+.+++...+.|+..||+.++ -.+...... .-....++.+.++++.|+++|++|.+.
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~--~~~~~~~~~~~~~i~~ak~~G~~v~~~ 138 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALG--TTLEENLAMIRDSVAYLKSHGREVIFD 138 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 35678888999999998764 111111000 111347889999999999999999884
No 224
>PRK08068 transaminase; Reviewed
Probab=25.69 E-value=58 Score=31.70 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||+|=.-
T Consensus 185 s~~~~~~l~~la~~~~~~ii~Deay 209 (389)
T PRK08068 185 TKAFFEETVAFAKKHNIGVVHDFAY 209 (389)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhh
Confidence 5789999999999999999999654
No 225
>PRK07550 hypothetical protein; Provisional
Probab=25.66 E-value=60 Score=31.52 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+.+++++|++||+.||+|-.-
T Consensus 181 ~~~~~~~i~~~~~~~~~~iI~Dd~y 205 (386)
T PRK07550 181 PPELLHELYDLARRHGIALILDETY 205 (386)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 4678999999999999999999853
No 226
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=25.60 E-value=63 Score=31.41 Aligned_cols=24 Identities=8% Similarity=-0.187 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
.-++++++.+.|++||+.+|+|=-
T Consensus 210 ~~~~l~~l~~l~~~~~~~li~Dev 233 (413)
T cd00610 210 PPGYLKALRELCRKHGILLIADEV 233 (413)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc
Confidence 457799999999999999999954
No 227
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=25.58 E-value=62 Score=32.41 Aligned_cols=26 Identities=19% Similarity=-0.010 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEe-cCCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSD-ITIS 292 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilD-lH~~ 292 (327)
.-+.|.++.+.|++||+.||-| +|++
T Consensus 176 t~eeL~~i~elc~kh~v~VISDEIHaD 202 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISDEIHAD 202 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEeeccccc
Confidence 4689999999999999999998 7773
No 228
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=25.57 E-value=76 Score=29.95 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=19.4
Q ss_pred HHHHHHHHHH-HHCCCcEEEecCCCCCC
Q 020317 269 RALDNAFTWA-GYAFFPVPSDITISVTT 295 (327)
Q Consensus 269 ~~ld~~v~wa-~~~gl~VilDlH~~~PG 295 (327)
+.|.+.++.. +++|.-|+||+|+ +|-
T Consensus 125 ~al~~~L~~~~~~~g~~~liD~HS-m~s 151 (263)
T TIGR02017 125 AALQAEIERLRAQHGYAVLYDAHS-IRS 151 (263)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecc-CCc
Confidence 4455566544 6889999999998 765
No 229
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=25.48 E-value=63 Score=32.30 Aligned_cols=24 Identities=21% Similarity=-0.065 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
.-+.+++++++|+++|+.||.|=-
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~ 231 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEV 231 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc
Confidence 467899999999999999999964
No 230
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=25.33 E-value=70 Score=32.90 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=35.5
Q ss_pred cCCHHHHH-HHHHcC---CCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 228 YIVEDDFK-FIAGNG---LNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 228 ~ite~Df~-~i~~~G---~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
-++.++++ .|++.| +..++.-+.... ..+.|+ +++.|+++-+.|++|||.|+||=-
T Consensus 166 ~~dl~~le~~I~~~g~~~i~~v~~tlt~N~----~GGqpv---slenlr~V~~la~~~GIplhLDgA 225 (467)
T TIGR02617 166 NFDLEGLERGIEEVGPNNVPYIVATITCNS----AGGQPV---SLANLKAVYEIAKKYDIPVVMDSA 225 (467)
T ss_pred CcCHHHHHHHHhhcCCCCceeeeeeEEEec----CCCEEe---CHHHHHHHHHHHHHcCCcEEEEhH
Confidence 34555555 345544 344444443211 122343 589999999999999999999964
No 231
>PRK07324 transaminase; Validated
Probab=25.32 E-value=65 Score=31.36 Aligned_cols=23 Identities=22% Similarity=-0.063 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++||+.+|+|=
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEc
Confidence 57789999999999999999995
No 232
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=25.32 E-value=63 Score=31.56 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|++|++.||.|=-
T Consensus 184 s~~~~~~l~~~a~~~~~~ii~De~ 207 (396)
T PRK09147 184 PLDDWKKLFALSDRYGFVIASDEC 207 (396)
T ss_pred CHHHHHHHHHHHHHcCeEEEeecc
Confidence 578999999999999999999853
No 233
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.25 E-value=1.2e+02 Score=28.58 Aligned_cols=49 Identities=16% Similarity=0.042 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
++.++.+++.||++|=|--+.-.+ ..+...++|+.|++.|++|+--+..
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGti~l------------~~~~r~~~I~~~~~~Gf~v~~EvG~ 135 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGTIDL------------PEEERLRLIRKAKEEGFKVLSEVGK 135 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES-
T ss_pred HHHHHHHHHcCCCEEEecCCceeC------------CHHHHHHHHHHHHHCCCEEeecccC
Confidence 677888999999999887765432 2455667788888999999877765
No 234
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=25.19 E-value=68 Score=30.56 Aligned_cols=24 Identities=13% Similarity=-0.249 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|+++++.||+|=-
T Consensus 140 s~~~~~~l~~~a~~~~~~iI~DE~ 163 (332)
T PRK06425 140 SRDSLLTISEICRKKGALLFIDEA 163 (332)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc
Confidence 578999999999999999999943
No 235
>PRK06207 aspartate aminotransferase; Provisional
Probab=25.13 E-value=65 Score=31.79 Aligned_cols=25 Identities=16% Similarity=-0.104 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++||+.||.|=.-
T Consensus 196 s~e~l~~l~~~a~~~~~~iI~De~Y 220 (405)
T PRK06207 196 SAEEIAQIAALARRYGATVIVDQLY 220 (405)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 5788999999999999999999754
No 236
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=25.10 E-value=83 Score=32.01 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=24.0
Q ss_pred CCCCCCc-chHHHHHHHHHHHHHCCCcEEEec
Q 020317 259 PPAPYVG-GSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 259 ~~~p~~~-~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
|.+|.=. -.-+.|..+++||.+++||||+|=
T Consensus 235 PsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DE 266 (471)
T KOG0256|consen 235 PSNPLGTTLSPEELISLLNFASRKNIHVISDE 266 (471)
T ss_pred CCCCCCCccCHHHHHHHHHHHhhcceEEEeeh
Confidence 3456521 156889999999999999999993
No 237
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=25.10 E-value=63 Score=31.38 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++|++.||.|=
T Consensus 183 s~~~~~~l~~~a~~~~~~ii~De 205 (388)
T PRK07366 183 PLSFFQEAVAFCQQHDLVLVHDF 205 (388)
T ss_pred CHHHHHHHHHHHHHcCeEEEEec
Confidence 57899999999999999999993
No 238
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=24.92 E-value=68 Score=32.65 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.|+++.+.|++||+.||+|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 47889999999999999999996
No 239
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.92 E-value=2.4e+02 Score=28.67 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHcCCCEEEeccc--cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 228 YIVEDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 228 ~ite~Df~~i~~~G~n~VRiPi~--yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
=.|.++.+.+.++|+..|++=++ .-.. .. .....-..++..+.++.+.|+++++.||-|
T Consensus 273 v~t~~~a~~l~~aGad~i~vg~g~G~~~~-t~-~~~~~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 273 VATAEQAKALIDAGADGLRVGIGPGSICT-TR-IVAGVGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred CCCHHHHHHHHHhCCCEEEECCCCCcCCc-cc-eecCCCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 45889999999999999998764 2111 10 001111126888899999999999999986
No 240
>PRK08636 aspartate aminotransferase; Provisional
Probab=24.90 E-value=67 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||.|-.-
T Consensus 193 s~~~~~~l~~~a~~~~~~II~De~Y 217 (403)
T PRK08636 193 EKSFYERLVALAKKERFYIISDIAY 217 (403)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 5789999999999999999999764
No 241
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=24.80 E-value=66 Score=31.37 Aligned_cols=23 Identities=13% Similarity=-0.216 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++++++.++|++||+.+|+|=
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~DE 224 (398)
T PRK03244 202 PAGYLAAAREITDRHGALLVLDE 224 (398)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 45779999999999999999994
No 242
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=24.78 E-value=67 Score=31.03 Aligned_cols=23 Identities=13% Similarity=-0.214 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++|+++.+.|++||+.+|+|=
T Consensus 186 ~~~~l~~l~~l~~~~~~~lI~DE 208 (377)
T PRK02936 186 DPAFLQEVQTLCKKFGALLIIDE 208 (377)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 45889999999999999999993
No 243
>PRK08912 hypothetical protein; Provisional
Probab=24.73 E-value=59 Score=31.58 Aligned_cols=24 Identities=8% Similarity=-0.175 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|++|++.||+|-.
T Consensus 177 s~~~~~~i~~~~~~~~~~ii~De~ 200 (387)
T PRK08912 177 PREELALLAEFCQRHDAVAICDEV 200 (387)
T ss_pred CHHHHHHHHHHHHHCCeEEEEhhh
Confidence 468899999999999999999965
No 244
>PRK06348 aspartate aminotransferase; Provisional
Probab=24.73 E-value=68 Score=31.22 Aligned_cols=25 Identities=20% Similarity=-0.069 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||+|-.-
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y 204 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVY 204 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEeccc
Confidence 5789999999999999999999754
No 245
>PRK06108 aspartate aminotransferase; Provisional
Probab=24.71 E-value=69 Score=30.82 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|+++|+.+|+|-.
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~ 199 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEV 199 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehh
Confidence 578899999999999999999954
No 246
>PRK09082 methionine aminotransferase; Validated
Probab=24.69 E-value=61 Score=31.60 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|++|++.||.|--
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~De~ 204 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLSDEV 204 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEEehh
Confidence 358899999999999999999864
No 247
>PLN02187 rooty/superroot1
Probab=24.68 E-value=66 Score=32.60 Aligned_cols=23 Identities=26% Similarity=-0.067 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-+.+++++++|++||+.||.|=
T Consensus 222 s~e~l~~i~~~a~~~~i~iI~DE 244 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVISDE 244 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEEEec
Confidence 47889999999999999999996
No 248
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.65 E-value=2.5e+02 Score=26.50 Aligned_cols=56 Identities=18% Similarity=0.068 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
+.++.+.+.|.+.|++=..+-. ..+....+...-..+.+.++++.|+++|+.|.+-
T Consensus 124 ~~v~~~~~~G~~~iK~~~~g~~-~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 124 AAVREQLRRGADQIKIMATGGV-LSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred HHHHHHHHhCCCEEEEeccCCc-CCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 4566677889999998764421 1111111111114688999999999999876643
No 249
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=24.61 E-value=68 Score=31.08 Aligned_cols=23 Identities=9% Similarity=-0.197 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++++++.++|++||+.+|+|=
T Consensus 201 ~~~~l~~l~~l~~~~~~~lI~DE 223 (396)
T PRK02627 201 DKEYLQALRELCDENGILLILDE 223 (396)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 35689999999999999999995
No 250
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=24.59 E-value=63 Score=31.93 Aligned_cols=23 Identities=9% Similarity=-0.224 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++|+++.++|++||+.+|+|=
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~DE 224 (406)
T PRK12381 202 DKAFLQGLRELCDRHNALLIFDE 224 (406)
T ss_pred CHHHHHHHHHHHHHcCCEEEEcc
Confidence 47899999999999999999983
No 251
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=24.48 E-value=66 Score=30.95 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|+++++.||+|-.
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~ 183 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEA 183 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecc
Confidence 467899999999999999999985
No 252
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=24.34 E-value=2e+02 Score=29.25 Aligned_cols=58 Identities=19% Similarity=0.086 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCEEEecccccc------------------ccCCCCCCCC-CcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWM------------------ASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~------------------~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++.+...|++.+-||++--- +..|+--+|. ..-+.++=+++++||++|++.||=|=
T Consensus 191 ~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD 267 (459)
T COG1167 191 GALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDD 267 (459)
T ss_pred HHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeC
Confidence 3456667889999999985210 0011111221 11268999999999999999999874
No 253
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=24.29 E-value=99 Score=30.51 Aligned_cols=35 Identities=9% Similarity=-0.178 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCCC
Q 020317 266 GSLRALDNAFTWAGYAFFPVPSDITISVTTSQDLT 300 (327)
Q Consensus 266 ~~~~~ld~~v~wa~~~gl~VilDlH~~~PG~qn~~ 300 (327)
+....|+++.+.|+++|+.+|+|--...|-.++..
T Consensus 149 g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl 183 (377)
T TIGR01324 149 FEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL 183 (377)
T ss_pred CcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc
Confidence 45778999999999999999999544144344433
No 254
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=24.24 E-value=72 Score=31.17 Aligned_cols=25 Identities=16% Similarity=-0.164 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||+|-.-
T Consensus 184 s~~~~~~l~~~~~~~~~~ii~D~~y 208 (391)
T PRK07309 184 SREQIKALADVLKKYDIFVISDEVY 208 (391)
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccc
Confidence 4678999999999999999999876
No 255
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=24.18 E-value=1.4e+02 Score=27.41 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=37.7
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEE
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPS 287 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~Vil 287 (327)
.....|||+|+..+...|...|++|-+- +.. |. |-+.|+++||.+++
T Consensus 160 ~~KklITe~dl~~l~~~g~~~i~v~k~s--IIT-----pL----------A~Dyak~~~I~I~~ 206 (207)
T TIGR02536 160 NKKKLITEKDLKKLTKNGVSEIILSKKS--ILT-----PL----------AKDYAKEKNINIKL 206 (207)
T ss_pred cccceecHHHHHHHHhCCCcEEEeCCCC--Ccc-----hh----------HHHHHHHcCCeEee
Confidence 5667899999999999999999999862 222 32 66889999999876
No 256
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=24.16 E-value=58 Score=31.75 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||.|=.-
T Consensus 183 s~~~~~~l~~~a~~~~~~ii~De~Y 207 (393)
T TIGR03538 183 SLDTLKKLIELADQYGFIIASDECY 207 (393)
T ss_pred CHHHHHHHHHHHHHCCEEEEECcch
Confidence 5788999999999999999999653
No 257
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=24.16 E-value=75 Score=30.31 Aligned_cols=25 Identities=8% Similarity=-0.320 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++|+.||+|=.-
T Consensus 142 s~~~l~~l~~~~~~~~~~iI~DE~y 166 (330)
T PRK05664 142 DPARLLAWHARLAARGGWLVVDEAF 166 (330)
T ss_pred CHHHHHHHHHHHHhcCCEEEEECCc
Confidence 5788999999999999999999654
No 258
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=24.10 E-value=60 Score=26.44 Aligned_cols=21 Identities=14% Similarity=-0.138 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCcEEEecC
Q 020317 270 ALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 270 ~ld~~v~wa~~~gl~VilDlH 290 (327)
.++++-++.+.||..||||+-
T Consensus 88 v~~kv~eY~e~~G~~Vii~t~ 108 (109)
T PF15647_consen 88 VHDKVKEYIERYGGKVIIDTK 108 (109)
T ss_pred ccHHHHHHHHHcCcEEEecCC
Confidence 578888999999999999973
No 259
>PRK05939 hypothetical protein; Provisional
Probab=24.09 E-value=1e+02 Score=30.61 Aligned_cols=33 Identities=6% Similarity=-0.261 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHCCCcEEEec-CCCCCCCCCC
Q 020317 266 GSLRALDNAFTWAGYAFFPVPSDI-TISVTTSQDL 299 (327)
Q Consensus 266 ~~~~~ld~~v~wa~~~gl~VilDl-H~~~PG~qn~ 299 (327)
+...-|+++.+.|+++|+.||+|- |+ .|..++.
T Consensus 145 G~v~dl~~I~~la~~~gi~livD~t~a-~~~~~~~ 178 (397)
T PRK05939 145 TQVADLAGIGALCRERGLLYVVDNTMT-SPWLFRP 178 (397)
T ss_pred CCHHhHHHHHHHHHHcCCEEEEECCcc-cccccCc
Confidence 356779999999999999999998 45 5655544
No 260
>PRK07777 aminotransferase; Validated
Probab=24.06 E-value=70 Score=31.08 Aligned_cols=25 Identities=16% Similarity=-0.083 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.+|+|-.-
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y 201 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVY 201 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccc
Confidence 4678999999999999999999654
No 261
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.99 E-value=1.4e+02 Score=29.42 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=38.3
Q ss_pred HHHHHHcCCCEEEeccccccccCCCCCCCC-CcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 234 FKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 234 f~~i~~~G~n~VRiPi~yw~~~~~~~~~p~-~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.+.++++|.+.|.+=+.|- +. .++- ....++.|.++.+.|+++||-+++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~----~d-~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR----PD-EDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC----CC-cchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 4567899999999988543 10 1121 12478899999999999999999973
No 262
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=23.91 E-value=68 Score=31.48 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+.+++++|++|++.||+|-.-
T Consensus 191 s~~~~~~l~~~a~~~~~~iI~De~y 215 (402)
T TIGR03542 191 TKEQLKELVDYANEHGSLILFDAAY 215 (402)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEchh
Confidence 5788999999999999999999864
No 263
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=23.87 E-value=70 Score=31.27 Aligned_cols=24 Identities=13% Similarity=-0.133 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
.-+++++++++|++|++.||.|-.
T Consensus 190 s~~~~~~l~~~a~~~~~~ii~De~ 213 (396)
T PRK09257 190 TPEQWDELAELLKERGLIPFLDIA 213 (396)
T ss_pred CHHHHHHHHHHHHhCCcEEEEecc
Confidence 679999999999999999999864
No 264
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=23.73 E-value=1.4e+02 Score=28.99 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCC------CCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTP------PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~------~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
+-++++.+.|+|+- .-.-...+ -+||....++.|+++++.|++.|+..+.=||-
T Consensus 19 ~l~~f~~~~kmN~Y------iYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 19 DLIRFLGRYKMNTY------IYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp HHHHHHHHTT--EE------EE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred HHHHHHHHcCCceE------EECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 45777889998853 21111111 24565668999999999999999999999997
No 265
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.48 E-value=60 Score=31.65 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCCcEEEecCC
Q 020317 271 LDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 271 ld~~v~wa~~~gl~VilDlH~ 291 (327)
|+.++..|++.+|.+++|+|.
T Consensus 201 l~evL~lc~e~~iP~v~D~hH 221 (312)
T TIGR00629 201 VEDLLPVCEELNIPFVLDFHH 221 (312)
T ss_pred HHHHHHHHHhcCCCEEEEhHH
Confidence 688999999999999999997
No 266
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=23.40 E-value=73 Score=30.87 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.||+|---
T Consensus 184 ~~~~~~~l~~~~~~~~~~ii~De~y 208 (385)
T PRK09276 184 DLEFFEEVVDFAKKYDIIVCHDAAY 208 (385)
T ss_pred CHHHHHHHHHHHHHCCcEEEEecch
Confidence 5788999999999999999999754
No 267
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.34 E-value=1e+02 Score=28.50 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.-++..+..|+..|++..+.... . +.+.......+.|.++++.|+++||.+.|=-|.
T Consensus 89 ~~i~~A~~lG~~~v~~~~g~~~~-~--~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 89 DEIERCEELGIRLLVFHPGSYLG-Q--SKEEGLKRVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHcCCCEEEECCCCCCC-C--CHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 34556678899999887664321 0 001111224567777777777888777777766
No 268
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.31 E-value=89 Score=23.66 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHCCCcEEE
Q 020317 267 SLRALDNAFTWAGYAFFPVPS 287 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~Vil 287 (327)
+-..++.++++|+++|++|+.
T Consensus 40 a~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEE
Confidence 568899999999999999974
No 269
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=23.18 E-value=1.8e+02 Score=26.41 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=29.4
Q ss_pred HHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHH-HHC-CCcEEEecCCC
Q 020317 235 KFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWA-GYA-FFPVPSDITIS 292 (327)
Q Consensus 235 ~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa-~~~-gl~VilDlH~~ 292 (327)
+.+.+.|+.++.--- ..+ .|-+..+..+..+.|+-+ +++ +|+++||||.+
T Consensus 41 ~~Le~~Gi~vihd~t----~~~----~~~y~~sY~~Sr~tv~~~l~~~p~i~~viDiHRD 92 (196)
T TIGR02867 41 KELEEKGIGVIHDKT----VHD----GLNYEQSYDRSRETVKKALKENKDLKYIIDLHRD 92 (196)
T ss_pred HHHHHCCCeEEEeCC----ccC----CccHHHHHHHHHHHHHHHHHHCCCceEEEEeecC
Confidence 345677988875443 111 122334566666655443 334 68999999984
No 270
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=23.15 E-value=80 Score=31.19 Aligned_cols=24 Identities=21% Similarity=-0.031 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|++|++.||.|--
T Consensus 188 s~~~~~~l~~~a~~~~~~ii~De~ 211 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVIADEV 211 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEcc
Confidence 578899999999999999999964
No 271
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=23.03 E-value=75 Score=31.01 Aligned_cols=23 Identities=4% Similarity=-0.192 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHCCCcEEEecC
Q 020317 268 LRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 268 ~~~ld~~v~wa~~~gl~VilDlH 290 (327)
-++|+++.+.|++||+.+|+|==
T Consensus 207 ~~~l~~l~~l~~~~gi~lI~DEv 229 (401)
T PRK00854 207 AGYFTRVRELCTANNVTLILDEI 229 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEech
Confidence 46799999999999999999943
No 272
>PRK06225 aspartate aminotransferase; Provisional
Probab=23.01 E-value=75 Score=30.77 Aligned_cols=23 Identities=9% Similarity=-0.179 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|+++|+.+|+|-
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De 197 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDC 197 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeh
Confidence 36789999999999999999995
No 273
>PTZ00377 alanine aminotransferase; Provisional
Probab=22.93 E-value=74 Score=32.26 Aligned_cols=23 Identities=4% Similarity=-0.008 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++|++.||.|=
T Consensus 236 s~e~~~~i~~~a~~~~~~iI~De 258 (481)
T PTZ00377 236 TRDVMEEIIKFCYEKGIVLMADE 258 (481)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeh
Confidence 57889999999999999999994
No 274
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=22.91 E-value=75 Score=29.79 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.|+++++.|++||+.||+|-
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDe 166 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDG 166 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeech
Confidence 47889999999999999999994
No 275
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=22.91 E-value=1.2e+02 Score=22.30 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=19.9
Q ss_pred ceEEEEccCCCceEEEecCCCcEEE
Q 020317 146 TFEIVRNSNDLSRVRIKAPNGFFLQ 170 (327)
Q Consensus 146 ~F~l~~~~~~~~~~~Lra~ng~yv~ 170 (327)
+|.|-...+|.-+++|++.||.-+-
T Consensus 4 kfei~kdk~Ge~rfrlkA~N~eiI~ 28 (59)
T COG3422 4 KFEIYKDKAGEYRFRLKAANGEIIL 28 (59)
T ss_pred eEEEEEcCCCcEEEEEEccCccEEE
Confidence 6888888887788899999986643
No 276
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.91 E-value=1.8e+02 Score=28.68 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCC-cchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~-~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.-..+.++++|.+.|++=+-|. ..+ .|-. .-..++++++.+.|++.+|.-+|-+=.
T Consensus 110 ~ws~~rike~GadavK~Llyy~-pD~----~~ein~~k~a~vervg~eC~a~dipf~lE~l~ 166 (329)
T PRK04161 110 EWSVKRLKEAGADAVKFLLYYD-VDG----DEEINDQKQAYIERIGSECTAEDIPFFLELLT 166 (329)
T ss_pred hhhHHHHHHhCCCeEEEEEEEC-CCC----CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3456788999999999998444 211 2322 137899999999999999999999876
No 277
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=22.89 E-value=1.2e+02 Score=29.56 Aligned_cols=56 Identities=18% Similarity=0.060 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEecccc----ccccCCCCCCCCC------cchHHHHHHHHHHHHHCCCcEEEec
Q 020317 231 EDDFKFIAGNGLNAVRIPVGW----WMASDPTPPAPYV------GGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~y----w~~~~~~~~~p~~------~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
++-++++++.|+|.|=|.+.- =.+.. ..|.. .....-++++++.++++|||+|==+
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s---~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDS---QVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecC---CCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 356788899999999998841 00100 01111 1123668999999999999998544
No 278
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=22.84 E-value=1.1e+02 Score=31.12 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=40.0
Q ss_pred HHHHcCCCEEE-eccccccccCCCCCCCCCc--chHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 236 FIAGNGLNAVR-IPVGWWMASDPTPPAPYVG--GSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 236 ~i~~~G~n~VR-iPi~yw~~~~~~~~~p~~~--~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.+...|++..= .||.|..-.+. .-|... ..|+|.|+++.|-.++|+.|-.+.|+
T Consensus 116 ~~~a~g~~a~egg~isy~~py~k--~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg 172 (428)
T cd00245 116 IAIASGFDATEGGPISYNLPYSK--NVPLEKSIENWQYCDRLVGFYEENGVPINREPFG 172 (428)
T ss_pred HHHHhCcccccccceeeccccCC--CCCHHHHHHHHHHHHHHHHHHHhcCceecccCCc
Confidence 34577888776 89988642221 113322 37999999999999999999999999
No 279
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=22.75 E-value=75 Score=31.39 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEe
Q 020317 267 SLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilD 288 (327)
.+++|+.+.++|++|||++-+|
T Consensus 148 ~l~el~~i~~~~k~~~l~LHmD 169 (342)
T COG2008 148 PLDELEAISAVCKEHGLPLHMD 169 (342)
T ss_pred CHHHHHHHHHHHHHhCCceeec
Confidence 6999999999999999999988
No 280
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=22.73 E-value=66 Score=31.12 Aligned_cols=23 Identities=9% Similarity=-0.178 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++|.++.+.|++||+-+|+|=
T Consensus 196 ~~~~l~~l~~lc~~~gillI~DE 218 (339)
T PF00202_consen 196 PPEYLRELRELCREHGILLIADE 218 (339)
T ss_dssp -TTHHHHHHHHHHHTT-EEEEEE
T ss_pred ccchhhehcccccccccceeccc
Confidence 46789999999999999999994
No 281
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=22.72 E-value=75 Score=31.72 Aligned_cols=23 Identities=9% Similarity=-0.218 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++|+++.+.|++||+.+|+|=
T Consensus 226 ~~~~l~~l~~lc~~~g~llI~DE 248 (433)
T PRK08117 226 PKSFLKKLREICDRHGILLIFDE 248 (433)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 46889999999999999999994
No 282
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=22.71 E-value=1e+02 Score=29.46 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=37.9
Q ss_pred cccCCHHHHHHHH---HcCCCEEEeccccccccCCCCCCCCC-cchHHHHHHHHHHHHHCCCcEEEecC-CCCCC
Q 020317 226 STYIVEDDFKFIA---GNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDIT-ISVTT 295 (327)
Q Consensus 226 ~~~ite~Df~~i~---~~G~n~VRiPi~yw~~~~~~~~~p~~-~~~~~~ld~~v~wa~~~gl~VilDlH-~~~PG 295 (327)
...++++.++.++ ++|++ +||=+|-..+.+.. -.-.. ....+.+.++++.++++|+.|..|+= + +||
T Consensus 118 pd~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d~~-L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~G-lPg 189 (302)
T TIGR01212 118 PDCVPDEVLDLLAEYVERGYE-VWVELGLQTAHDKT-LKKINRGHDFACYVDAVKRARKRGIKVCSHVILG-LPG 189 (302)
T ss_pred CCcCCHHHHHHHHHhhhCCce-EEEEEccCcCCHHH-HHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEEC-CCC
Confidence 3456776666665 45884 34444433321100 00000 11567788899999999999887643 4 555
No 283
>PLN00144 acetylornithine transaminase
Probab=22.69 E-value=77 Score=31.18 Aligned_cols=21 Identities=14% Similarity=-0.168 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEe
Q 020317 268 LRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 268 ~~~ld~~v~wa~~~gl~VilD 288 (327)
-++++++.++|++||+.+|+|
T Consensus 187 ~~~~~~l~~l~~~~g~llI~D 207 (382)
T PLN00144 187 KEFLQGLRALCDEAGALLVFD 207 (382)
T ss_pred HHHHHHHHHHHHHcCCEEEEe
Confidence 467999999999999999998
No 284
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=22.68 E-value=78 Score=30.94 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|+++|+.||+|=-
T Consensus 186 ~~~~~~~l~~~a~~~~~~ii~De~ 209 (401)
T TIGR01264 186 SRQHLEEILAVAERQCLPIIADEI 209 (401)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEhh
Confidence 468899999999999999999964
No 285
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=22.66 E-value=76 Score=31.27 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++|+.||+|=.-
T Consensus 195 s~~~~~~l~~~a~~~~~~ii~De~y 219 (412)
T PTZ00433 195 SRKHVEDIIRLCEELRLPLISDEIY 219 (412)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeccc
Confidence 4688999999999999999999754
No 286
>PRK07337 aminotransferase; Validated
Probab=22.59 E-value=82 Score=30.59 Aligned_cols=22 Identities=9% Similarity=-0.280 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEe
Q 020317 267 SLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilD 288 (327)
..+.+++++++|+++|+.||+|
T Consensus 181 ~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 181 APDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred CHHHHHHHHHHHHHCCCEEEEe
Confidence 4788999999999999999999
No 287
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=22.52 E-value=1e+02 Score=29.39 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=39.8
Q ss_pred CHHHHHHHHHcCCCEEEecccc--ccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 230 VEDDFKFIAGNGLNAVRIPVGW--WMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 230 te~Df~~i~~~G~n~VRiPi~y--w~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+|++...+.|+..|-+.++= .+... ....-....++.+.+++++|+++|++|-+-+=
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~--~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFK--KLKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHH--HhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4688988888999988876641 11110 00111234788899999999999998887764
No 288
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=22.49 E-value=77 Score=30.34 Aligned_cols=25 Identities=12% Similarity=-0.087 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++||+.||.|-.-
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y 178 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECY 178 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4678999999999999999999865
No 289
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=22.27 E-value=54 Score=31.55 Aligned_cols=25 Identities=16% Similarity=-0.075 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
....+++++++|++||+.||+|==.
T Consensus 189 ~~~~~~~l~~la~~~~~~li~De~~ 213 (397)
T PRK06939 189 DIAPLPEICDLADKYDALVMVDDSH 213 (397)
T ss_pred CcCCHHHHHHHHHHhCCEEEEECcc
Confidence 3466889999999999999999654
No 290
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=22.21 E-value=67 Score=30.14 Aligned_cols=24 Identities=25% Similarity=0.076 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHCCCcEEEec
Q 020317 266 GSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 266 ~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
|...-++++++.|+++|+.||+|-
T Consensus 167 G~~~dl~~I~~~~~~~g~~livDe 190 (294)
T cd00615 167 GICYNLRKIVEEAHHRGLPVLVDE 190 (294)
T ss_pred CEecCHHHHHHHHHhcCCeEEEEC
Confidence 333458899999999999999995
No 291
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=22.14 E-value=3.2e+02 Score=26.21 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCCCCCCCCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQD 298 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~~~PG~qn 298 (327)
.+++...-+.||+.| +.|. ...||.+ ..+.-+++++.|+++|+.|=--|-. +.|...
T Consensus 90 ~e~i~~ai~~GftSV--------M~Dg-S~lp~ee-Ni~~Trevv~~Ah~~gv~VEaElG~-igg~ed 146 (285)
T PRK07709 90 FEKCKEAIDAGFTSV--------MIDA-SHHPFEE-NVETTKKVVEYAHARNVSVEAELGT-VGGQED 146 (285)
T ss_pred HHHHHHHHHcCCCEE--------EEeC-CCCCHHH-HHHHHHHHHHHHHHcCCEEEEEEec-cCCccC
Confidence 467777678899888 3343 2357754 6999999999999999999999999 866543
No 292
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.11 E-value=1.7e+02 Score=28.78 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCEEEeccccccccCCCCCCCCCc-chHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 232 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 232 ~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~-~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
-..+.++++|.+.|++=+-|. ..+ .|-.. ...++++++.+.|++++|.-+|-+=.
T Consensus 110 ~s~~rike~GadavK~Llyy~-pD~----~~ein~~k~a~vervg~ec~a~dipf~lE~lt 165 (325)
T TIGR01232 110 WSAKRLKEQGANAVKFLLYYD-VDD----AEEINIQKKAYIERIGSECVAEDIPFFLEVLT 165 (325)
T ss_pred ccHHHHHHhCCCeEEEEEEeC-CCC----ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 356788999999999988443 211 12221 27899999999999999999998776
No 293
>PRK06290 aspartate aminotransferase; Provisional
Probab=22.07 E-value=75 Score=31.57 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.-+.+.+++++|++||+.||+|=.-
T Consensus 197 s~e~l~~l~~la~~~~~~iI~DEaY 221 (410)
T PRK06290 197 TKEFYEEVVDFAKENNIIVVQDAAY 221 (410)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecch
Confidence 5788999999999999999999754
No 294
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=22.05 E-value=94 Score=29.36 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
.++.|.+++++++++|+.||+|+=
T Consensus 71 gi~~l~~~~~~~~~~g~~VilD~K 94 (261)
T TIGR02127 71 GFKALEEVIAHARSLGLPVLADVK 94 (261)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEee
Confidence 578899999999999999999984
No 295
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=21.90 E-value=69 Score=23.90 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCCcEEEecCC
Q 020317 270 ALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 270 ~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.++++++.|++.|-.|+|++|+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a 26 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGA 26 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEET
T ss_pred hHHHHHHHHHHcCCCEEEEEEC
Confidence 3788999999999999999987
No 296
>PRK06855 aminotransferase; Validated
Probab=21.75 E-value=82 Score=31.45 Aligned_cols=23 Identities=13% Similarity=-0.101 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
..+.+++++++|++|++.||.|=
T Consensus 189 s~~~~~~l~~~a~~~~~~II~De 211 (433)
T PRK06855 189 PKEILREIVDIAREYDLFIICDE 211 (433)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 57899999999999999999985
No 297
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=21.67 E-value=83 Score=31.46 Aligned_cols=23 Identities=13% Similarity=-0.159 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEec
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.-++|+++.+.|++||+-+|+|=
T Consensus 217 ~~~~l~~l~~lc~~~g~llI~DE 239 (425)
T PRK09264 217 SAEWLQRLAKLCRKHDILLIVDD 239 (425)
T ss_pred CHHHHHHHHHHHHHcCcEEEEec
Confidence 35799999999999999999993
No 298
>PRK07682 hypothetical protein; Validated
Probab=21.67 E-value=79 Score=30.53 Aligned_cols=25 Identities=16% Similarity=-0.043 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++|++.+|+|=--
T Consensus 172 s~~~~~~l~~~~~~~~~~ii~De~y 196 (378)
T PRK07682 172 NKSELEEIAVIVEKHDLIVLSDEIY 196 (378)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhh
Confidence 4678999999999999999999754
No 299
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.59 E-value=95 Score=28.99 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=37.2
Q ss_pred HHHHHHHHHcC----CCEEEeccc--cccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 231 EDDFKFIAGNG----LNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 231 e~Df~~i~~~G----~n~VRiPi~--yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
+.|++...+.| +..||+.++ .-..... ..--....++.+.++++.|+++|++|.+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~--~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 133 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK--LKKTREEVLERAVEAVEYAKSHGLDVEFS 133 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH--hCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 68888888888 999998653 2111000 00001236788889999999999998864
No 300
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=21.53 E-value=2.5e+02 Score=27.48 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCCCCCCCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITISVTTSQ 297 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~~~PG~q 297 (327)
..+.++.+|+.|+++||.||.-+= +||-.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID--~PGH~ 96 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEID--TPGHT 96 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc--Cchhh
Confidence 478999999999999999999883 46643
No 301
>PRK08363 alanine aminotransferase; Validated
Probab=21.45 E-value=73 Score=31.11 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
..+.+++++++|+++|+.+|+|=.
T Consensus 184 ~~~~~~~l~~~a~~~~~~li~Dea 207 (398)
T PRK08363 184 EKKTLKEILDIAGEHDLPVISDEI 207 (398)
T ss_pred CHHHHHHHHHHHHHcCeEEEEhhh
Confidence 467899999999999999999974
No 302
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=21.37 E-value=85 Score=30.77 Aligned_cols=24 Identities=13% Similarity=-0.191 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEecCC
Q 020317 268 LRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 268 ~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
-++|+++.+.|++||+.+|+|--.
T Consensus 206 ~~~l~~l~~l~~~~g~lli~DEv~ 229 (396)
T PRK04073 206 EGFLKAARELCKEENVLFIADEIQ 229 (396)
T ss_pred HHHHHHHHHHHHHcCCEEEEecch
Confidence 468999999999999999999644
No 303
>PLN02681 proline dehydrogenase
Probab=21.00 E-value=93 Score=31.88 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.+++|+++++.|+++|+.|+||+=.
T Consensus 218 ~~~rl~~i~~~A~~~gv~l~IDAE~ 242 (455)
T PLN02681 218 AHERLQKLCERAAQLGVPLLIDAEY 242 (455)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCc
Confidence 5789999999999999999999954
No 304
>PLN02656 tyrosine transaminase
Probab=21.00 E-value=88 Score=30.83 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|++||+.||+|---
T Consensus 187 s~~~~~~i~~~a~~~~~~ii~De~y 211 (409)
T PLN02656 187 SYQHLKKIAETAEKLKILVIADEVY 211 (409)
T ss_pred CHHHHHHHHHHHHHcCCEEEEehhh
Confidence 3578999999999999999999753
No 305
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=21.00 E-value=3.4e+02 Score=25.92 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=47.0
Q ss_pred cccccCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCC
Q 020317 224 HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDL 299 (327)
Q Consensus 224 ~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~~~PG~qn~ 299 (327)
|.+-.-+.+++..--+.||+.| +.|. ...||.. ..+.-.++++.|+++|+.|=--+.. ++|...+
T Consensus 75 HLDH~~~~~~i~~ai~~GftSV--------MiD~-S~l~~ee-Ni~~t~~vv~~ah~~gv~VEaElG~-i~g~e~~ 139 (276)
T cd00947 75 HLDHGSSFELIKRAIRAGFSSV--------MIDG-SHLPFEE-NVAKTKEVVELAHAYGVSVEAELGR-IGGEEDG 139 (276)
T ss_pred ECCCCCCHHHHHHHHHhCCCEE--------EeCC-CCCCHHH-HHHHHHHHHHHHHHcCCeEEEEEee-ecCccCC
Confidence 3333333466666668898888 3343 2356654 6999999999999999999999999 8776543
No 306
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=20.97 E-value=88 Score=30.69 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++|+.||+|-.-
T Consensus 187 ~~~~~~~i~~~a~~~~~~ii~De~y 211 (403)
T TIGR01265 187 SRDHLQKIAEVARKLGIPIIADEIY 211 (403)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEccc
Confidence 4578899999999999999999653
No 307
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=20.86 E-value=90 Score=31.51 Aligned_cols=36 Identities=14% Similarity=-0.099 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHCCCcEEEecCCCCCCCCCCCCCCCC
Q 020317 269 RALDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGGP 305 (327)
Q Consensus 269 ~~ld~~v~wa~~~gl~VilDlH~~~PG~qn~~~~sG~ 305 (327)
..++++.++|+++|+.||.|--. +-|+.-.....|.
T Consensus 173 ~dl~~I~~la~~~gi~vIeDaa~-a~G~~~~g~~~G~ 208 (438)
T PRK15407 173 FDLAAVKAFCDKHNLWLIEDNCD-ALGSTYDGRMTGT 208 (438)
T ss_pred hhHHHHHHHHHHCCCEEEEECcc-chhhhcCCeeeec
Confidence 45788999999999999999766 5565543333443
No 308
>PRK06256 biotin synthase; Validated
Probab=20.86 E-value=1.1e+02 Score=29.45 Aligned_cols=57 Identities=9% Similarity=-0.045 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCC-cchHHHHHHHHHHHHHCCCcEEEe
Q 020317 228 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 228 ~ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~-~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
.++++.++.++++|+..+-+.+ .. ++.-.+-.. ...++..-++++.+++.||+|...
T Consensus 149 ~l~~e~l~~LkeaG~~~v~~~l--Et--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 149 LLTEEQAERLKEAGVDRYNHNL--ET--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred cCCHHHHHHHHHhCCCEEecCC--cc--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccC
Confidence 4788999999999988664433 21 100000000 125777778889999999876544
No 309
>PRK07568 aspartate aminotransferase; Provisional
Probab=20.79 E-value=87 Score=30.37 Aligned_cols=25 Identities=16% Similarity=-0.081 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++|+.||+|-.-
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y 204 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVY 204 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccc
Confidence 4678999999999999999999653
No 310
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.64 E-value=3.7e+02 Score=25.81 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEecCCCCCCCCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQD 298 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDlH~~~PG~qn 298 (327)
-+++..--+.||+.|=+ |. ...||.. ..+...++++.|+++|+.|=.-|-. +.|...
T Consensus 87 ~e~i~~Ai~~GftSVM~--------Dg-S~l~~ee-Ni~~T~~vve~Ah~~gv~VEaElG~-vgg~ed 143 (283)
T PRK07998 87 FEDVKQAVRAGFTSVMI--------DG-AALPFEE-NIAFTKEAVDFAKSYGVPVEAELGA-ILGKED 143 (283)
T ss_pred HHHHHHHHHcCCCEEEE--------eC-CCCCHHH-HHHHHHHHHHHHHHcCCEEEEEecc-CCCccc
Confidence 36666656889988833 32 2346644 6899999999999999998888988 766543
No 311
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=20.52 E-value=2.2e+02 Score=30.14 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=53.5
Q ss_pred hhhh-cccccCCHHHHHHHHHcCCCEEEecccccccc-CC---CCCCCCC-------cchHHHHHHHHHHHHHCCCcEEE
Q 020317 220 QVMR-HWSTYIVEDDFKFIAGNGLNAVRIPVGWWMAS-DP---TPPAPYV-------GGSLRALDNAFTWAGYAFFPVPS 287 (327)
Q Consensus 220 ~~l~-~~~~~ite~Df~~i~~~G~n~VRiPi~yw~~~-~~---~~~~p~~-------~~~~~~ld~~v~wa~~~gl~Vil 287 (327)
+.+. -|+.|+..+--+.+..-|++.+-+.=|..... +. ...+.++ ..+++.+..-++.|++.|.+|-|
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhi 363 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHI 363 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhcCCEEEE
Confidence 3455 79999999888888888888777664443321 11 0011111 23688888899999999999999
Q ss_pred ecCCCCCCC
Q 020317 288 DITISVTTS 296 (327)
Q Consensus 288 DlH~~~PG~ 296 (327)
=.|- .||-
T Consensus 364 l~HI-PpG~ 371 (577)
T KOG3770|consen 364 LGHI-PPGD 371 (577)
T ss_pred EEee-CCCC
Confidence 9999 8884
No 312
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.40 E-value=2.2e+02 Score=27.93 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCEEEeccccccccCCCCCCCCC-cchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 233 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 233 Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~-~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.++++|.+.|++=+-|. ..+ .|-. ....++++++.+.|++.+|.-+|-+=.
T Consensus 110 S~~rike~GadavK~Llyy~-pD~----~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYD-VDE----PDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred hHHHHHHhCCCeEEEEEEEC-CCC----CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 46788999999999998444 211 1222 237899999999999999999998876
No 313
>PRK07683 aminotransferase A; Validated
Probab=20.35 E-value=88 Score=30.49 Aligned_cols=25 Identities=20% Similarity=-0.071 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++|+.||+|---
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y 203 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIY 203 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 4688999999999999999999654
No 314
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.32 E-value=84 Score=28.44 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=37.8
Q ss_pred CHHHHHH----HHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEec
Q 020317 230 VEDDFKF----IAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 289 (327)
Q Consensus 230 te~Df~~----i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilDl 289 (327)
.++|++. +++.|+..||+.+.-....-.....--....++.+.+++++|+++|+.|.+.+
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~ 128 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC 128 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc
Confidence 3456665 34689999998875321000000000112368889999999999999997765
No 315
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=20.30 E-value=88 Score=32.07 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
.-+.+++++++|++|++.||.|=-
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~ 322 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEI 322 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehh
Confidence 478899999999999999999953
No 316
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=20.30 E-value=85 Score=29.55 Aligned_cols=24 Identities=13% Similarity=-0.162 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEecCC
Q 020317 268 LRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 268 ~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
...+++++++|+++|+.||+|==.
T Consensus 162 ~~~~~~i~~l~~~~~~~li~De~~ 185 (360)
T TIGR00858 162 IAPLPQLVALAERYGAWLMVDDAH 185 (360)
T ss_pred CcCHHHHHHHHHHcCcEEEEECcc
Confidence 445788999999999999999643
No 317
>PRK08361 aspartate aminotransferase; Provisional
Probab=20.21 E-value=89 Score=30.42 Aligned_cols=25 Identities=12% Similarity=-0.146 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 267 SLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 267 ~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
..+.+++++++|+++++.+|+|-.-
T Consensus 184 ~~~~~~~l~~~~~~~~~~ii~De~y 208 (391)
T PRK08361 184 DKEVAKAIADIAEDYNIYILSDEPY 208 (391)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEccc
Confidence 4678899999999999999999543
No 318
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=20.17 E-value=2.5e+02 Score=26.86 Aligned_cols=54 Identities=13% Similarity=-0.081 Sum_probs=33.8
Q ss_pred HHHcCCCEEEeccccccccC-------CCCCCCCC-cchHHHHHHHHHHHHHCCCcEEEecC
Q 020317 237 IAGNGLNAVRIPVGWWMASD-------PTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDIT 290 (327)
Q Consensus 237 i~~~G~n~VRiPi~yw~~~~-------~~~~~p~~-~~~~~~ld~~v~wa~~~gl~VilDlH 290 (327)
.+..|...+.+|...-.+.. .+|.+|-= .-.-+.+.+++++|++++..||+|=-
T Consensus 110 ~~~~g~~~~~v~~~~~~~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEa 171 (339)
T PRK06959 110 FARHGHRVVPLDEAADTLPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEA 171 (339)
T ss_pred HHHCCCEEEeecccchhccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 34668888877764311111 02344420 01467799999999999999999854
No 319
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.12 E-value=3.4e+02 Score=26.90 Aligned_cols=60 Identities=13% Similarity=-0.044 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHcCCCEEEeccccccccCCCCCCCCCcchHHHHHHHHHHHHHCCCcEEEe
Q 020317 229 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 288 (327)
Q Consensus 229 ite~Df~~i~~~G~n~VRiPi~yw~~~~~~~~~p~~~~~~~~ld~~v~wa~~~gl~VilD 288 (327)
.|.+-.+.+-++|++.||+=|+-=...........-..++..+.++-+.|+++|.+||=|
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIAD 219 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSD 219 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEec
Confidence 366777888899999999998743332211111111128999999999999999999976
No 320
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=20.10 E-value=92 Score=25.30 Aligned_cols=21 Identities=14% Similarity=-0.143 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCcEEEecCC
Q 020317 271 LDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 271 ld~~v~wa~~~gl~VilDlH~ 291 (327)
++++.++|+++|+.+|+|--.
T Consensus 111 ~~~l~~~~~~~~~~li~D~a~ 131 (170)
T cd01494 111 LKEIRKIAKEYGILLLVDAAS 131 (170)
T ss_pred HHHHHHHHHHcCCEEEEeccc
Confidence 378889999999999999855
No 321
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=20.03 E-value=66 Score=33.35 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEeccccccccCCCC---CCCC--CcchHHHHHHHHHHHHHCCCcEEEecCC
Q 020317 231 EDDFKFIAGNGLNAVRIPVGWWMASDPTP---PAPY--VGGSLRALDNAFTWAGYAFFPVPSDITI 291 (327)
Q Consensus 231 e~Df~~i~~~G~n~VRiPi~yw~~~~~~~---~~p~--~~~~~~~ld~~v~wa~~~gl~VilDlH~ 291 (327)
.+|++.....|++.+|+=| .|.++ .+-+ ....+.|+++.++-|..++|+|+|-+=.
T Consensus 29 ~~dle~a~~vg~k~lR~fi-----LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitliv 89 (587)
T COG3934 29 KADLEPAGFVGVKDLRLFI-----LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIV 89 (587)
T ss_pred hcccccccCccceeEEEEE-----ecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEee
Confidence 4677777889999999864 22110 0112 2225999999999999999999998765
Done!