Query 020319
Match_columns 327
No_of_seqs 134 out of 1053
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04823 ALAD_PBGS_aspartate_ri 100.0 3E-108 7E-113 781.3 22.1 222 104-327 1-223 (320)
2 COG0113 HemB Delta-aminolevuli 100.0 3E-108 6E-113 779.3 21.0 226 101-327 5-231 (330)
3 PF00490 ALAD: Delta-aminolevu 100.0 8E-108 2E-112 780.2 18.3 224 103-327 3-228 (324)
4 PRK09283 delta-aminolevulinic 100.0 4E-107 9E-112 775.0 22.4 222 102-327 4-226 (323)
5 PRK13384 delta-aminolevulinic 100.0 3E-106 6E-111 768.2 22.4 219 104-327 8-227 (322)
6 cd00384 ALAD_PBGS Porphobilino 100.0 3E-106 6E-111 766.5 22.0 217 107-327 1-218 (314)
7 cd04824 eu_ALAD_PBGS_cysteine_ 100.0 1E-103 3E-108 749.8 22.2 216 111-327 5-223 (320)
8 KOG2794 Delta-aminolevulinic a 100.0 5.2E-99 1E-103 709.3 19.1 236 87-326 2-238 (340)
9 PRK07807 inosine 5-monophospha 94.9 0.25 5.5E-06 50.8 11.0 117 158-290 227-358 (479)
10 COG1060 ThiH Thiamine biosynth 93.7 0.18 3.9E-06 50.4 6.8 119 149-294 86-222 (370)
11 PRK07188 nicotinate phosphorib 93.6 0.3 6.5E-06 48.6 8.3 70 198-292 188-285 (352)
12 cd00377 ICL_PEPM Members of th 92.6 1.3 2.8E-05 41.4 10.5 118 158-296 85-205 (243)
13 cd02803 OYE_like_FMN_family Ol 92.4 1.3 2.9E-05 41.8 10.3 93 158-264 142-246 (327)
14 PRK08444 hypothetical protein; 91.7 0.68 1.5E-05 45.8 7.8 120 149-286 76-204 (353)
15 PRK12999 pyruvate carboxylase; 90.1 0.66 1.4E-05 52.5 6.8 97 159-280 628-733 (1146)
16 cd00945 Aldolase_Class_I Class 89.6 3.8 8.1E-05 34.7 9.5 97 158-294 14-120 (201)
17 PRK09613 thiH thiamine biosynt 89.3 2.3 5E-05 44.0 9.4 107 151-290 113-238 (469)
18 TIGR03551 F420_cofH 7,8-dideme 89.0 1.1 2.4E-05 43.3 6.6 57 150-217 67-123 (343)
19 PRK14042 pyruvate carboxylase 88.9 2.5 5.4E-05 45.0 9.5 134 105-280 54-196 (596)
20 PRK05927 hypothetical protein; 88.7 0.77 1.7E-05 45.3 5.4 115 148-286 71-200 (350)
21 TIGR01302 IMP_dehydrog inosine 88.2 4.9 0.00011 40.8 10.8 48 157-217 223-270 (450)
22 PRK12331 oxaloacetate decarbox 87.6 3.5 7.6E-05 42.3 9.4 102 147-280 87-196 (448)
23 TIGR01303 IMP_DH_rel_1 IMP deh 87.5 4 8.7E-05 42.1 9.8 117 158-293 225-359 (475)
24 TIGR00423 radical SAM domain p 87.5 1.1 2.5E-05 42.6 5.5 58 149-217 32-89 (309)
25 PRK12330 oxaloacetate decarbox 87.5 3.1 6.7E-05 43.5 9.0 102 147-280 88-197 (499)
26 TIGR02320 PEP_mutase phosphoen 87.5 3.7 8.1E-05 39.7 9.1 91 158-266 93-189 (285)
27 PRK05458 guanosine 5'-monophos 87.5 2.4 5.2E-05 41.9 7.9 50 158-220 97-149 (326)
28 PF13714 PEP_mutase: Phosphoen 87.0 3.6 7.8E-05 38.8 8.5 123 114-280 60-190 (238)
29 cd02932 OYE_YqiM_FMN Old yello 86.4 8.4 0.00018 37.2 10.8 95 158-266 155-261 (336)
30 PRK08508 biotin synthase; Prov 86.1 10 0.00023 35.9 11.1 60 149-217 35-95 (279)
31 PF04131 NanE: Putative N-acet 85.0 4.3 9.4E-05 37.9 7.8 48 159-220 53-100 (192)
32 PRK08445 hypothetical protein; 84.9 3.3 7.2E-05 40.7 7.4 60 147-217 67-126 (348)
33 PRK05718 keto-hydroxyglutarate 84.4 12 0.00026 34.7 10.5 53 154-223 25-77 (212)
34 TIGR01108 oadA oxaloacetate de 84.3 4.8 0.0001 42.6 8.7 92 156-280 90-191 (582)
35 PRK06843 inosine 5-monophospha 84.2 11 0.00024 38.5 10.9 114 157-289 152-283 (404)
36 TIGR03700 mena_SCO4494 putativ 83.9 2.6 5.6E-05 41.1 6.1 59 148-217 74-132 (351)
37 COG5016 Pyruvate/oxaloacetate 83.7 4.6 9.9E-05 42.0 8.0 114 151-295 92-219 (472)
38 cd06557 KPHMT-like Ketopantoat 83.7 5.8 0.00012 38.0 8.2 109 149-280 83-192 (254)
39 cd04733 OYE_like_2_FMN Old yel 83.2 12 0.00025 36.3 10.2 93 158-264 150-254 (338)
40 PRK11320 prpB 2-methylisocitra 83.1 22 0.00048 34.8 12.1 101 158-281 94-199 (292)
41 PRK00311 panB 3-methyl-2-oxobu 83.0 9 0.0002 36.9 9.3 109 149-280 86-195 (264)
42 TIGR02321 Pphn_pyruv_hyd phosp 82.5 10 0.00022 36.9 9.6 104 159-280 92-202 (290)
43 PRK06552 keto-hydroxyglutarate 82.0 43 0.00094 31.1 13.2 46 158-219 26-74 (213)
44 COG0800 Eda 2-keto-3-deoxy-6-p 82.0 9.1 0.0002 36.2 8.7 107 158-307 26-153 (211)
45 cd01571 NAPRTase_B Nicotinate 81.7 4 8.6E-05 39.6 6.4 67 199-292 170-250 (302)
46 cd04824 eu_ALAD_PBGS_cysteine_ 81.6 3.7 8E-05 41.0 6.2 141 92-263 153-308 (320)
47 PF03437 BtpA: BtpA family; I 81.6 15 0.00034 35.3 10.3 136 143-312 10-167 (254)
48 PLN02274 inosine-5'-monophosph 81.1 19 0.00042 37.5 11.5 113 158-289 248-378 (505)
49 PRK07360 FO synthase subunit 2 81.0 3.5 7.6E-05 40.7 5.9 58 149-216 87-144 (371)
50 PRK05096 guanosine 5'-monophos 80.8 7.2 0.00016 39.4 8.0 96 158-292 108-218 (346)
51 cd00452 KDPG_aldolase KDPG and 80.6 12 0.00026 33.2 8.6 60 158-233 17-81 (190)
52 TIGR02317 prpB methylisocitrat 80.6 14 0.00031 35.9 9.8 102 158-280 89-196 (285)
53 COG0269 SgbH 3-hexulose-6-phos 80.5 3.6 7.8E-05 39.0 5.5 61 196-283 42-102 (217)
54 PTZ00314 inosine-5'-monophosph 80.4 21 0.00046 37.0 11.5 47 158-217 241-287 (495)
55 cd00452 KDPG_aldolase KDPG and 80.3 7.2 0.00016 34.6 7.1 79 143-270 97-175 (190)
56 TIGR02319 CPEP_Pphonmut carbox 79.7 25 0.00054 34.5 11.1 101 159-280 94-200 (294)
57 PRK12581 oxaloacetate decarbox 79.0 7.2 0.00016 40.6 7.6 91 158-279 106-204 (468)
58 cd06556 ICL_KPHMT Members of t 78.7 35 0.00076 32.3 11.5 123 158-311 90-216 (240)
59 cd00381 IMPDH IMPDH: The catal 78.4 9.8 0.00021 37.2 8.0 47 158-217 94-140 (325)
60 PRK09234 fbiC FO synthase; Rev 78.3 4.9 0.00011 44.4 6.5 59 148-217 552-610 (843)
61 COG2513 PrpB PEP phosphonomuta 78.1 23 0.0005 35.1 10.3 103 159-283 95-201 (289)
62 PRK12656 fructose-6-phosphate 77.6 3.4 7.4E-05 38.9 4.4 53 243-296 110-170 (222)
63 TIGR03128 RuMP_HxlA 3-hexulose 77.5 10 0.00022 33.5 7.2 89 158-285 13-103 (206)
64 TIGR01305 GMP_reduct_1 guanosi 77.4 31 0.00067 34.9 11.2 48 158-218 107-156 (343)
65 PRK12928 lipoyl synthase; Prov 77.2 17 0.00037 35.1 9.1 130 151-295 85-243 (290)
66 PRK09282 pyruvate carboxylase 76.7 12 0.00026 39.8 8.6 94 156-280 95-196 (592)
67 PF01136 Peptidase_U32: Peptid 76.4 27 0.00059 31.4 9.7 80 158-283 3-82 (233)
68 PRK14040 oxaloacetate decarbox 75.6 15 0.00032 39.2 8.9 92 158-280 98-197 (593)
69 cd00408 DHDPS-like Dihydrodipi 75.3 25 0.00055 32.6 9.5 108 153-295 15-131 (281)
70 cd07940 DRE_TIM_IPMS 2-isoprop 75.2 7.6 0.00016 36.3 6.0 89 148-268 135-223 (268)
71 COG1038 PycA Pyruvate carboxyl 74.8 8 0.00017 43.5 6.8 101 156-281 629-737 (1149)
72 PLN02877 alpha-amylase/limit d 74.2 68 0.0015 36.6 13.9 153 128-283 340-579 (970)
73 cd02072 Glm_B12_BD B12 binding 74.2 4.9 0.00011 34.9 4.2 49 241-292 35-86 (128)
74 TIGR00640 acid_CoA_mut_C methy 73.8 5.1 0.00011 34.4 4.2 48 242-292 39-89 (132)
75 PRK05692 hydroxymethylglutaryl 73.4 7.2 0.00016 37.5 5.5 101 160-280 82-197 (287)
76 PRK14041 oxaloacetate decarbox 72.8 17 0.00038 37.7 8.4 91 159-280 97-195 (467)
77 TIGR01235 pyruv_carbox pyruvat 72.6 11 0.00024 43.0 7.6 100 156-280 624-731 (1143)
78 PLN02428 lipoic acid synthase 72.6 27 0.00058 35.1 9.4 180 111-304 64-300 (349)
79 PRK13306 ulaD 3-keto-L-gulonat 72.4 17 0.00037 33.5 7.5 32 188-221 34-65 (216)
80 TIGR01182 eda Entner-Doudoroff 72.2 48 0.001 30.9 10.4 105 158-306 21-147 (204)
81 PF00682 HMGL-like: HMGL-like 71.6 3.1 6.8E-05 37.5 2.5 82 150-265 131-212 (237)
82 PRK06015 keto-hydroxyglutarate 71.6 33 0.00072 31.9 9.2 105 158-306 17-143 (201)
83 smart00642 Aamy Alpha-amylase 71.1 24 0.00052 31.2 7.9 68 155-226 18-97 (166)
84 PF01081 Aldolase: KDPG and KH 70.9 21 0.00047 32.9 7.8 105 158-307 21-148 (196)
85 cd02933 OYE_like_FMN Old yello 70.5 55 0.0012 32.1 10.9 98 159-267 154-262 (338)
86 PRK09140 2-dehydro-3-deoxy-6-p 70.4 53 0.0011 30.2 10.2 113 158-292 23-156 (206)
87 TIGR00875 fsa_talC_mipB fructo 70.3 6.6 0.00014 36.6 4.4 47 249-296 112-166 (213)
88 TIGR00674 dapA dihydrodipicoli 70.0 39 0.00084 31.8 9.5 107 153-294 16-131 (285)
89 PRK09240 thiH thiamine biosynt 69.9 10 0.00022 37.6 5.8 53 151-213 102-154 (371)
90 cd07945 DRE_TIM_CMS Leptospira 69.2 11 0.00023 36.2 5.6 81 152-266 143-223 (280)
91 PF00478 IMPDH: IMP dehydrogen 68.8 18 0.00038 36.5 7.3 67 158-263 108-174 (352)
92 TIGR00587 nfo apurinic endonuc 68.8 41 0.0009 31.5 9.4 104 152-268 6-112 (274)
93 PF02219 MTHFR: Methylenetetra 68.5 25 0.00055 33.3 7.9 117 158-291 86-204 (287)
94 PRK06552 keto-hydroxyglutarate 68.4 12 0.00025 34.8 5.6 54 141-217 107-160 (213)
95 TIGR03128 RuMP_HxlA 3-hexulose 67.8 38 0.00082 29.9 8.5 75 159-269 115-190 (206)
96 cd03174 DRE_TIM_metallolyase D 67.5 11 0.00023 34.2 5.0 86 149-268 137-224 (265)
97 cd02801 DUS_like_FMN Dihydrour 67.1 28 0.00061 30.9 7.6 62 158-220 68-131 (231)
98 PRK05848 nicotinate-nucleotide 67.0 27 0.00058 33.8 7.9 65 197-291 166-233 (273)
99 cd07938 DRE_TIM_HMGL 3-hydroxy 67.0 11 0.00024 35.8 5.3 104 160-280 76-191 (274)
100 KOG2335 tRNA-dihydrouridine sy 66.9 8 0.00017 39.2 4.4 79 158-245 156-243 (358)
101 cd00958 DhnA Class I fructose- 66.5 45 0.00097 30.2 8.8 100 158-283 77-178 (235)
102 TIGR02351 thiH thiazole biosyn 66.5 11 0.00024 37.1 5.3 54 151-214 101-154 (366)
103 cd00950 DHDPS Dihydrodipicolin 65.9 49 0.0011 30.9 9.2 109 153-294 18-133 (284)
104 PRK09234 fbiC FO synthase; Rev 65.3 53 0.0011 36.7 10.6 61 148-210 97-164 (843)
105 cd02931 ER_like_FMN Enoate red 65.3 41 0.0009 33.5 9.0 109 159-267 152-273 (382)
106 PRK07094 biotin synthase; Prov 64.9 31 0.00068 32.7 7.8 54 150-215 67-120 (323)
107 cd00952 CHBPH_aldolase Trans-o 64.8 45 0.00098 32.2 9.0 110 153-294 26-142 (309)
108 cd04734 OYE_like_3_FMN Old yel 64.7 43 0.00093 32.8 8.9 94 159-266 143-249 (343)
109 cd04735 OYE_like_4_FMN Old yel 64.4 32 0.00069 33.7 8.0 95 159-267 146-256 (353)
110 PRK05848 nicotinate-nucleotide 64.3 18 0.00038 35.0 6.1 80 147-267 179-258 (273)
111 cd00954 NAL N-Acetylneuraminic 64.2 64 0.0014 30.5 9.7 106 158-294 22-135 (288)
112 PRK01362 putative translaldola 64.1 10 0.00022 35.4 4.3 47 249-296 112-166 (214)
113 KOG0369 Pyruvate carboxylase [ 63.8 16 0.00036 40.6 6.3 140 148-323 710-861 (1176)
114 PRK07565 dihydroorotate dehydr 63.6 78 0.0017 30.7 10.4 117 131-288 166-298 (334)
115 PF01729 QRPTase_C: Quinolinat 63.5 19 0.00042 32.3 5.8 67 159-266 89-155 (169)
116 TIGR00259 thylakoid_BtpA membr 63.3 33 0.00072 33.1 7.7 124 143-300 9-152 (257)
117 cd02930 DCR_FMN 2,4-dienoyl-Co 62.8 57 0.0012 31.9 9.3 96 159-268 139-246 (353)
118 cd04727 pdxS PdxS is a subunit 62.7 28 0.0006 34.4 7.1 64 159-266 76-139 (283)
119 COG1856 Uncharacterized homolo 62.5 29 0.00062 34.0 7.0 67 144-234 33-99 (275)
120 cd00956 Transaldolase_FSA Tran 62.5 13 0.00029 34.2 4.7 44 249-296 112-166 (211)
121 PRK01130 N-acetylmannosamine-6 62.3 1.2E+02 0.0026 27.3 10.9 48 160-219 78-126 (221)
122 PRK04147 N-acetylneuraminate l 61.8 71 0.0015 30.3 9.6 105 158-294 25-137 (293)
123 PRK03170 dihydrodipicolinate s 61.6 1.1E+02 0.0024 28.8 10.8 109 153-294 19-134 (292)
124 PRK07107 inosine 5-monophospha 61.5 38 0.00082 35.4 8.3 66 159-263 243-309 (502)
125 PRK05567 inosine 5'-monophosph 61.5 67 0.0015 33.0 10.0 46 159-217 229-274 (486)
126 cd01537 PBP1_Repressors_Sugar_ 61.3 53 0.0012 27.9 7.9 138 162-304 71-224 (264)
127 PRK06015 keto-hydroxyglutarate 61.1 17 0.00037 33.8 5.2 55 141-217 95-149 (201)
128 PRK00043 thiE thiamine-phospha 60.8 62 0.0014 28.3 8.4 78 160-269 114-192 (212)
129 TIGR01501 MthylAspMutase methy 60.7 13 0.00027 32.6 4.0 48 241-291 37-87 (134)
130 TIGR00510 lipA lipoate synthas 60.7 43 0.00093 32.8 8.1 173 110-294 29-245 (302)
131 PRK07226 fructose-bisphosphate 60.7 65 0.0014 30.3 9.0 100 158-283 94-195 (267)
132 cd00959 DeoC 2-deoxyribose-5-p 60.4 1.3E+02 0.0028 27.1 10.6 103 158-291 70-178 (203)
133 PRK08185 hypothetical protein; 60.2 28 0.00061 33.9 6.7 100 160-280 81-197 (283)
134 PRK07028 bifunctional hexulose 59.9 50 0.0011 33.1 8.6 50 158-221 17-66 (430)
135 PRK12331 oxaloacetate decarbox 59.9 15 0.00032 37.9 5.0 99 152-285 150-254 (448)
136 PRK14041 oxaloacetate decarbox 59.7 16 0.00035 37.9 5.2 99 152-285 149-253 (467)
137 PRK03620 5-dehydro-4-deoxygluc 59.5 1.6E+02 0.0035 28.2 11.6 122 130-294 11-139 (303)
138 PRK12330 oxaloacetate decarbox 58.7 28 0.00061 36.6 6.8 100 152-285 151-257 (499)
139 PF00128 Alpha-amylase: Alpha 58.2 16 0.00035 32.5 4.4 120 158-284 5-189 (316)
140 PRK12653 fructose-6-phosphate 58.2 18 0.00039 33.9 4.8 47 249-296 114-168 (220)
141 TIGR03550 F420_cofG 7,8-dideme 58.2 32 0.0007 33.2 6.7 58 150-209 32-96 (322)
142 PLN02746 hydroxymethylglutaryl 58.2 18 0.0004 36.1 5.2 118 160-297 124-260 (347)
143 PRK00865 glutamate racemase; P 58.1 58 0.0013 30.6 8.2 90 202-303 20-128 (261)
144 PF09505 Dimeth_Pyl: Dimethyla 58.1 6 0.00013 40.3 1.8 73 185-265 210-285 (466)
145 TIGR00126 deoC deoxyribose-pho 58.0 1.3E+02 0.0027 28.1 10.3 97 158-281 71-173 (211)
146 PF01884 PcrB: PcrB family; I 58.0 20 0.00043 34.2 5.1 58 169-264 152-209 (230)
147 TIGR00222 panB 3-methyl-2-oxob 57.9 9.1 0.0002 37.1 2.9 40 241-280 155-194 (263)
148 cd07941 DRE_TIM_LeuA3 Desulfob 57.9 25 0.00054 33.3 5.8 82 151-266 146-227 (273)
149 PRK05926 hypothetical protein; 57.5 19 0.00042 36.0 5.2 57 148-216 94-150 (370)
150 COG0176 MipB Transaldolase [Ca 57.3 11 0.00023 36.4 3.2 105 193-302 73-187 (239)
151 cd00951 KDGDH 5-dehydro-4-deox 57.3 1.3E+02 0.0027 28.7 10.4 107 154-294 19-132 (289)
152 COG0685 MetF 5,10-methylenetet 57.3 1.8E+02 0.0039 28.2 11.6 130 141-292 78-208 (291)
153 PF05582 Peptidase_U57: YabG p 57.2 8.9 0.00019 37.9 2.7 72 141-237 98-171 (287)
154 cd07939 DRE_TIM_NifV Streptomy 57.2 23 0.0005 32.9 5.4 88 146-268 129-216 (259)
155 KOG2550 IMP dehydrogenase/GMP 57.1 28 0.0006 36.6 6.3 75 160-274 253-327 (503)
156 TIGR03699 mena_SCO4550 menaqui 57.0 18 0.00039 34.8 4.8 55 150-215 69-123 (340)
157 TIGR02313 HpaI-NOT-DapA 2,4-di 56.9 95 0.0021 29.7 9.6 104 158-294 22-134 (294)
158 PRK07428 nicotinate-nucleotide 56.6 40 0.00087 33.0 7.1 76 152-268 198-273 (288)
159 cd07943 DRE_TIM_HOA 4-hydroxy- 56.6 22 0.00048 33.2 5.2 81 151-265 136-216 (263)
160 cd07944 DRE_TIM_HOA_like 4-hyd 56.4 78 0.0017 30.0 8.8 131 146-281 11-181 (266)
161 TIGR02855 spore_yabG sporulati 55.7 10 0.00022 37.5 2.8 68 145-237 101-170 (283)
162 cd04726 KGPDC_HPS 3-Keto-L-gul 55.5 45 0.00097 29.1 6.6 49 158-221 14-62 (202)
163 cd04739 DHOD_like Dihydroorota 55.4 87 0.0019 30.5 9.2 118 131-288 164-296 (325)
164 cd04823 ALAD_PBGS_aspartate_ri 55.3 30 0.00066 34.7 6.1 139 92-263 154-307 (320)
165 TIGR00742 yjbN tRNA dihydrouri 54.9 85 0.0018 30.8 9.0 58 158-217 142-200 (318)
166 PLN02361 alpha-amylase 54.1 54 0.0012 33.4 7.8 59 158-223 30-100 (401)
167 PRK12655 fructose-6-phosphate 54.0 17 0.00036 34.1 3.9 48 248-296 113-168 (220)
168 PRK00881 purH bifunctional pho 53.4 16 0.00034 38.7 4.0 39 266-311 58-113 (513)
169 PRK07114 keto-hydroxyglutarate 52.8 1.2E+02 0.0025 28.7 9.3 105 158-306 28-157 (222)
170 PF02679 ComA: (2R)-phospho-3- 52.7 9 0.00019 36.8 1.9 85 158-272 85-169 (244)
171 cd07937 DRE_TIM_PC_TC_5S Pyruv 52.6 91 0.002 29.6 8.6 102 147-280 82-191 (275)
172 cd07938 DRE_TIM_HMGL 3-hydroxy 52.5 28 0.0006 33.2 5.2 82 153-268 146-227 (274)
173 COG0113 HemB Delta-aminolevuli 52.4 40 0.00087 34.0 6.4 79 158-263 234-315 (330)
174 cd01539 PBP1_GGBP Periplasmic 52.4 1.9E+02 0.0041 26.6 11.7 107 159-286 46-171 (303)
175 cd00384 ALAD_PBGS Porphobilino 52.4 38 0.00083 34.0 6.2 139 92-263 149-302 (314)
176 TIGR01108 oadA oxaloacetate de 52.3 23 0.00049 37.7 5.0 98 153-285 146-249 (582)
177 PRK15381 pathogenicity island 52.3 34 0.00073 35.0 6.0 61 158-219 262-333 (408)
178 PF04551 GcpE: GcpE protein; 52.1 13 0.00028 37.8 3.0 50 238-292 27-79 (359)
179 cd02810 DHOD_DHPD_FMN Dihydroo 52.0 1E+02 0.0022 28.7 8.8 85 158-266 112-196 (289)
180 COG3543 Uncharacterized conser 51.6 16 0.00035 32.6 3.2 39 202-244 32-74 (135)
181 cd06314 PBP1_tmGBP Periplasmic 50.9 1.8E+02 0.0039 25.8 9.9 103 159-285 44-151 (271)
182 PRK00694 4-hydroxy-3-methylbut 50.4 18 0.00038 39.1 3.8 51 238-293 41-94 (606)
183 cd07944 DRE_TIM_HOA_like 4-hyd 50.1 35 0.00077 32.3 5.5 88 152-272 134-221 (266)
184 PRK08195 4-hyroxy-2-oxovalerat 50.0 49 0.0011 32.6 6.6 60 151-231 139-199 (337)
185 PLN02746 hydroxymethylglutaryl 49.9 35 0.00075 34.2 5.6 84 152-269 193-276 (347)
186 KOG3111 D-ribulose-5-phosphate 49.8 16 0.00035 34.8 3.1 49 243-292 14-73 (224)
187 PRK05481 lipoyl synthase; Prov 49.7 40 0.00087 32.4 5.8 152 129-295 53-235 (289)
188 TIGR01182 eda Entner-Doudoroff 49.5 27 0.00058 32.5 4.5 55 141-217 99-153 (204)
189 cd03322 rpsA The starvation se 49.3 1.9E+02 0.004 28.4 10.4 103 158-282 129-260 (361)
190 TIGR00676 fadh2 5,10-methylene 49.3 2.3E+02 0.0051 26.8 10.8 110 158-285 74-184 (272)
191 PRK08255 salicylyl-CoA 5-hydro 49.2 1E+02 0.0022 33.5 9.3 95 159-267 553-659 (765)
192 TIGR02709 branched_ptb branche 49.0 1.4E+02 0.0031 29.1 9.5 119 155-298 9-160 (271)
193 PRK09282 pyruvate carboxylase 48.5 28 0.0006 37.1 4.9 98 153-285 151-254 (592)
194 cd02810 DHOD_DHPD_FMN Dihydroo 48.0 72 0.0016 29.7 7.1 96 131-264 163-270 (289)
195 cd00957 Transaldolase_TalAB Tr 47.6 22 0.00048 35.2 3.8 50 244-294 154-224 (313)
196 PLN02540 methylenetetrahydrofo 47.6 1.8E+02 0.0039 31.4 10.6 136 146-290 58-200 (565)
197 PF05853 DUF849: Prokaryotic p 47.6 22 0.00048 34.0 3.7 58 153-217 23-80 (272)
198 PRK12346 transaldolase A; Prov 47.5 28 0.0006 34.6 4.5 46 249-295 160-226 (316)
199 PRK14042 pyruvate carboxylase 47.3 32 0.00069 36.9 5.2 134 152-324 150-297 (596)
200 PRK12581 oxaloacetate decarbox 47.0 34 0.00074 35.8 5.2 94 158-285 164-263 (468)
201 PLN02808 alpha-galactosidase 46.9 2.2E+02 0.0048 29.2 10.8 105 166-285 63-178 (386)
202 PRK05718 keto-hydroxyglutarate 46.8 37 0.00081 31.6 5.0 66 141-228 106-176 (212)
203 cd04727 pdxS PdxS is a subunit 46.8 1.4E+02 0.003 29.6 9.0 100 160-295 18-120 (283)
204 PLN02925 4-hydroxy-3-methylbut 46.6 22 0.00048 39.1 3.9 50 238-292 106-158 (733)
205 PLN02743 nicotinamidase 46.4 60 0.0013 30.6 6.4 83 165-264 145-235 (239)
206 PF04898 Glu_syn_central: Glut 46.3 40 0.00087 33.2 5.3 54 241-294 137-201 (287)
207 PRK02048 4-hydroxy-3-methylbut 45.9 24 0.00051 38.2 3.9 50 238-292 37-89 (611)
208 TIGR01334 modD putative molybd 45.9 69 0.0015 31.2 6.8 71 159-270 197-267 (277)
209 PRK08385 nicotinate-nucleotide 45.9 89 0.0019 30.5 7.6 65 199-290 169-234 (278)
210 PTZ00411 transaldolase-like pr 45.8 30 0.00065 34.6 4.4 47 248-295 170-237 (333)
211 cd00945 Aldolase_Class_I Class 45.8 1.1E+02 0.0024 25.8 7.3 85 158-268 66-151 (201)
212 TIGR01306 GMP_reduct_2 guanosi 45.5 95 0.0021 31.0 7.8 21 197-217 122-142 (321)
213 PRK13384 delta-aminolevulinic 45.3 49 0.0011 33.4 5.7 79 158-263 230-311 (322)
214 TIGR03849 arch_ComA phosphosul 45.2 63 0.0014 31.1 6.3 85 158-272 72-156 (237)
215 PRK06096 molybdenum transport 45.0 34 0.00074 33.4 4.6 56 198-280 175-230 (284)
216 PLN02417 dihydrodipicolinate s 45.0 1.5E+02 0.0033 28.1 8.8 106 154-294 20-132 (280)
217 cd00516 PRTase_typeII Phosphor 44.9 69 0.0015 29.9 6.5 82 184-293 151-245 (281)
218 PRK08385 nicotinate-nucleotide 44.6 82 0.0018 30.7 7.1 69 159-268 191-261 (278)
219 cd01837 SGNH_plant_lipase_like 44.3 60 0.0013 30.7 6.0 61 158-219 165-242 (315)
220 TIGR00874 talAB transaldolase. 44.3 31 0.00068 34.3 4.3 47 247-294 157-224 (317)
221 cd07947 DRE_TIM_Re_CS Clostrid 44.1 87 0.0019 30.2 7.2 100 148-270 67-174 (279)
222 cd01846 fatty_acyltransferase_ 44.0 91 0.002 28.2 7.0 61 158-219 132-205 (270)
223 PRK06096 molybdenum transport 43.8 72 0.0016 31.2 6.6 70 159-269 198-267 (284)
224 KOG2794 Delta-aminolevulinic a 43.8 24 0.00053 35.3 3.4 60 195-263 262-324 (340)
225 PRK11815 tRNA-dihydrouridine s 43.7 69 0.0015 31.4 6.5 91 159-266 79-171 (333)
226 PRK09283 delta-aminolevulinic 43.5 59 0.0013 32.8 6.0 139 92-263 157-310 (323)
227 PRK13307 bifunctional formalde 43.1 1E+02 0.0022 31.6 7.7 32 188-221 204-235 (391)
228 TIGR01890 N-Ac-Glu-synth amino 43.0 75 0.0016 31.9 6.8 104 160-294 150-258 (429)
229 PRK06256 biotin synthase; Vali 42.8 1E+02 0.0022 29.5 7.4 54 151-215 88-143 (336)
230 PRK14017 galactonate dehydrata 42.8 3.4E+02 0.0075 26.7 11.2 129 158-294 127-286 (382)
231 PRK07534 methionine synthase I 42.7 1.5E+02 0.0032 29.4 8.6 118 158-284 45-170 (336)
232 cd03465 URO-D_like The URO-D _ 42.6 18 0.00038 34.0 2.2 67 199-268 111-190 (330)
233 cd04726 KGPDC_HPS 3-Keto-L-gul 42.4 1.4E+02 0.003 26.0 7.6 68 161-264 117-184 (202)
234 TIGR00696 wecB_tagA_cpsF bacte 42.3 1.7E+02 0.0036 26.5 8.3 43 159-217 36-79 (177)
235 PRK07114 keto-hydroxyglutarate 42.2 46 0.00099 31.4 4.8 54 141-217 110-163 (222)
236 PRK14040 oxaloacetate decarbox 42.0 2.1E+02 0.0046 30.7 10.2 133 148-307 19-162 (593)
237 cd04747 OYE_like_5_FMN Old yel 41.8 1.9E+02 0.004 29.1 9.3 100 158-267 145-256 (361)
238 COG1794 RacX Aspartate racemas 41.8 42 0.00091 32.3 4.6 63 240-302 56-134 (230)
239 PF06838 Met_gamma_lyase: Meth 41.7 33 0.00071 35.5 4.0 30 198-227 176-205 (403)
240 smart00518 AP2Ec AP endonuclea 41.6 1.5E+02 0.0033 27.0 8.1 95 153-264 6-102 (273)
241 PLN02826 dihydroorotate dehydr 41.6 2E+02 0.0044 29.5 9.6 22 158-179 277-298 (409)
242 PLN02433 uroporphyrinogen deca 41.2 15 0.00033 35.6 1.6 74 197-271 114-204 (345)
243 PLN02229 alpha-galactosidase 41.0 2E+02 0.0043 30.0 9.5 120 151-285 73-208 (427)
244 PLN03116 ferredoxin--NADP+ red 40.8 3.1E+02 0.0066 26.2 10.3 107 159-285 171-287 (307)
245 cd07948 DRE_TIM_HCS Saccharomy 40.7 45 0.00097 31.7 4.6 83 150-267 135-217 (262)
246 PRK09856 fructoselysine 3-epim 40.6 1.3E+02 0.0029 27.3 7.5 92 158-263 14-107 (275)
247 PRK08195 4-hyroxy-2-oxovalerat 40.5 1E+02 0.0022 30.4 7.2 105 160-297 91-208 (337)
248 PRK04180 pyridoxal biosynthesi 40.3 1E+02 0.0022 30.8 7.0 63 160-266 86-148 (293)
249 PRK13111 trpA tryptophan synth 40.2 2.8E+02 0.006 26.6 9.8 21 158-178 27-48 (258)
250 cd03307 Mta_CmuA_like MtaA_Cmu 40.1 32 0.0007 32.8 3.6 106 197-307 112-242 (326)
251 PF00490 ALAD: Delta-aminolevu 40.1 47 0.001 33.5 4.8 138 93-263 160-312 (324)
252 cd07945 DRE_TIM_CMS Leptospira 40.0 55 0.0012 31.4 5.2 91 160-270 77-171 (280)
253 PTZ00170 D-ribulose-5-phosphat 39.9 45 0.00098 30.9 4.4 53 158-222 20-73 (228)
254 cd04740 DHOD_1B_like Dihydroor 39.9 2.3E+02 0.0049 26.7 9.1 22 158-179 167-188 (296)
255 PRK13523 NADPH dehydrogenase N 39.3 1.5E+02 0.0032 29.3 8.0 94 159-267 144-248 (337)
256 PRK12309 transaldolase/EF-hand 39.2 41 0.00088 34.3 4.3 50 244-294 160-230 (391)
257 TIGR03249 KdgD 5-dehydro-4-deo 39.0 2.9E+02 0.0064 26.3 9.8 104 158-294 27-137 (296)
258 PLN02489 homocysteine S-methyl 39.0 2.1E+02 0.0046 28.3 9.1 149 158-310 55-234 (335)
259 TIGR01949 AroFGH_arch predicte 38.9 1.6E+02 0.0035 27.4 7.9 98 159-283 92-191 (258)
260 cd01573 modD_like ModD; Quinol 38.7 1E+02 0.0022 29.6 6.7 66 160-269 193-261 (272)
261 PF01791 DeoC: DeoC/LacD famil 38.7 5.1 0.00011 36.6 -1.9 99 158-264 113-226 (236)
262 PRK05286 dihydroorotate dehydr 38.4 2.7E+02 0.0059 27.4 9.7 24 158-181 226-249 (344)
263 TIGR00343 pyridoxal 5'-phospha 38.4 1.1E+02 0.0023 30.6 6.8 62 160-265 79-140 (287)
264 cd00717 URO-D Uroporphyrinogen 38.4 21 0.00045 34.2 2.0 69 197-268 112-199 (335)
265 PF03681 UPF0150: Uncharacteri 38.2 76 0.0016 22.2 4.4 39 130-168 1-43 (48)
266 PRK07896 nicotinate-nucleotide 38.2 1.1E+02 0.0023 30.2 6.8 69 159-268 208-276 (289)
267 cd07937 DRE_TIM_PC_TC_5S Pyruv 38.0 67 0.0014 30.5 5.3 83 151-268 144-226 (275)
268 PRK13305 sgbH 3-keto-L-gulonat 37.8 1.2E+02 0.0026 28.3 6.9 32 188-221 34-65 (218)
269 PRK05660 HemN family oxidoredu 37.6 2.2E+02 0.0048 28.2 9.0 98 158-296 144-244 (378)
270 cd02811 IDI-2_FMN Isopentenyl- 37.4 2.4E+02 0.0052 27.5 9.1 103 160-288 192-321 (326)
271 TIGR02082 metH 5-methyltetrahy 37.3 1.5E+02 0.0033 34.5 8.7 131 157-292 49-198 (1178)
272 PRK12383 putative mutase; Prov 36.9 65 0.0014 33.1 5.3 76 153-233 228-306 (406)
273 TIGR01859 fruc_bis_ald_ fructo 36.8 78 0.0017 30.6 5.6 98 160-280 87-199 (282)
274 cd02940 DHPD_FMN Dihydropyrimi 36.7 2.6E+02 0.0057 26.7 9.1 82 158-264 181-279 (299)
275 cd00953 KDG_aldolase KDG (2-ke 36.1 3.8E+02 0.0083 25.4 10.4 102 158-295 21-129 (279)
276 PRK07379 coproporphyrinogen II 35.9 92 0.002 31.1 6.1 99 158-294 152-254 (400)
277 cd06556 ICL_KPHMT Members of t 35.8 93 0.002 29.5 5.9 118 142-298 12-136 (240)
278 COG1751 Uncharacterized conser 35.8 73 0.0016 29.7 4.9 89 159-280 16-104 (186)
279 COG1922 WecG Teichoic acid bio 35.8 2E+02 0.0043 28.1 8.1 125 109-283 52-185 (253)
280 TIGR01037 pyrD_sub1_fam dihydr 35.8 1.4E+02 0.003 28.2 7.0 105 158-288 170-292 (300)
281 PRK13125 trpA tryptophan synth 35.7 1E+02 0.0022 28.6 6.1 84 158-269 117-218 (244)
282 TIGR01334 modD putative molybd 35.7 58 0.0012 31.7 4.5 56 198-280 174-229 (277)
283 PRK08662 nicotinate phosphorib 35.4 2.4E+02 0.0052 28.2 8.9 71 197-292 184-266 (343)
284 PRK00668 ndk mulitfunctional n 35.3 20 0.00044 30.6 1.3 45 262-306 7-53 (134)
285 TIGR01370 cysRS possible cyste 34.9 4.7E+02 0.01 26.1 11.4 123 158-285 148-298 (315)
286 TIGR03217 4OH_2_O_val_ald 4-hy 34.8 1.8E+02 0.0038 28.8 7.8 106 160-298 90-208 (333)
287 PRK08645 bifunctional homocyst 34.7 2.5E+02 0.0054 30.0 9.4 127 158-295 43-174 (612)
288 cd04738 DHOD_2_like Dihydrooro 34.5 2.3E+02 0.0051 27.5 8.5 83 158-265 217-308 (327)
289 cd00537 MTHFR Methylenetetrahy 34.2 3.9E+02 0.0085 24.9 13.0 114 158-290 74-191 (274)
290 TIGR01464 hemE uroporphyrinoge 34.1 26 0.00056 33.6 1.9 69 197-268 115-202 (338)
291 PLN02424 ketopantoate hydroxym 34.0 2.9E+02 0.0062 28.1 9.1 40 241-280 177-216 (332)
292 TIGR01463 mtaA_cmuA methyltran 33.9 65 0.0014 30.8 4.6 107 197-307 121-253 (340)
293 PRK13397 3-deoxy-7-phosphohept 33.8 2.6E+02 0.0057 27.0 8.6 65 131-218 123-190 (250)
294 PRK10200 putative racemase; Pr 33.7 91 0.002 28.9 5.4 64 242-305 58-137 (230)
295 PRK08318 dihydropyrimidine deh 33.6 3.4E+02 0.0073 27.2 9.6 106 159-289 182-313 (420)
296 PRK05337 beta-hexosaminidase; 33.5 2.7E+02 0.0059 27.6 8.9 48 160-218 196-249 (337)
297 cd06533 Glyco_transf_WecG_TagA 33.2 3E+02 0.0065 24.3 8.3 44 159-217 34-77 (171)
298 COG1598 Predicted nuclease of 33.2 49 0.0011 25.7 3.0 50 129-179 2-56 (73)
299 cd07943 DRE_TIM_HOA 4-hydroxy- 33.2 2E+02 0.0044 26.8 7.6 105 160-297 88-204 (263)
300 cd04729 NanE N-acetylmannosami 33.2 2.7E+02 0.0058 25.1 8.2 47 160-218 82-129 (219)
301 PF13407 Peripla_BP_4: Peripla 33.1 3.1E+02 0.0067 24.0 8.3 110 158-292 43-158 (257)
302 PF10686 DUF2493: Protein of u 33.0 44 0.00095 26.1 2.7 30 188-217 9-38 (71)
303 cd00564 TMP_TenI Thiamine mono 32.9 1.9E+02 0.0041 24.4 6.8 91 158-264 13-120 (196)
304 PRK14332 (dimethylallyl)adenos 32.9 2.1E+02 0.0046 29.2 8.3 36 143-179 172-208 (449)
305 cd02071 MM_CoA_mut_B12_BD meth 32.9 76 0.0016 26.3 4.3 48 243-293 37-87 (122)
306 PRK00115 hemE uroporphyrinogen 32.8 29 0.00064 33.6 2.1 68 197-267 121-207 (346)
307 cd03326 MR_like_1 Mandelate ra 32.7 3.9E+02 0.0084 26.8 9.9 111 158-282 163-306 (385)
308 KOG2648 Diphthamide biosynthes 32.6 54 0.0012 34.5 4.0 68 141-226 24-98 (453)
309 PRK09441 cytoplasmic alpha-amy 32.4 1.4E+02 0.003 30.4 6.9 63 158-224 23-106 (479)
310 PF00215 OMPdecase: Orotidine 32.2 86 0.0019 28.5 4.9 68 198-284 43-111 (226)
311 cd00439 Transaldolase Transald 32.2 49 0.0011 31.5 3.4 53 243-296 144-217 (252)
312 TIGR02456 treS_nterm trehalose 32.0 1.8E+02 0.0039 30.3 7.7 67 158-224 29-101 (539)
313 PRK10415 tRNA-dihydrouridine s 32.0 2.8E+02 0.006 27.1 8.6 44 158-210 150-193 (321)
314 PF14681 UPRTase: Uracil phosp 31.8 82 0.0018 28.8 4.7 48 158-223 136-185 (207)
315 PF01076 Mob_Pre: Plasmid reco 31.8 69 0.0015 29.0 4.2 37 197-233 102-139 (196)
316 PLN03228 methylthioalkylmalate 31.5 1.6E+02 0.0035 31.1 7.3 20 252-271 304-323 (503)
317 cd07948 DRE_TIM_HCS Saccharomy 31.5 71 0.0015 30.4 4.3 100 159-281 73-184 (262)
318 PRK12999 pyruvate carboxylase; 31.4 1.3E+02 0.0029 34.7 7.2 134 153-324 688-834 (1146)
319 KOG0564 5,10-methylenetetrahyd 31.3 1.3E+02 0.0028 32.5 6.5 91 158-266 93-188 (590)
320 PRK09542 manB phosphomannomuta 31.2 3E+02 0.0066 27.8 9.0 85 168-265 186-275 (445)
321 TIGR02402 trehalose_TreZ malto 31.2 2.1E+02 0.0046 30.1 8.1 121 158-284 112-269 (542)
322 PF13380 CoA_binding_2: CoA bi 31.1 1.1E+02 0.0023 25.4 4.9 45 158-221 67-111 (116)
323 PRK07315 fructose-bisphosphate 31.1 76 0.0016 30.9 4.5 97 160-280 89-200 (293)
324 PRK14340 (dimethylallyl)adenos 31.0 3.8E+02 0.0083 27.4 9.7 46 133-179 153-203 (445)
325 cd04740 DHOD_1B_like Dihydroor 30.9 3.2E+02 0.007 25.7 8.6 83 158-266 103-186 (296)
326 PRK06252 methylcobalamin:coenz 30.9 28 0.00061 33.2 1.6 70 197-269 121-203 (339)
327 PRK00854 rocD ornithine--oxo-a 30.8 1.4E+02 0.0031 28.7 6.4 72 147-228 166-237 (401)
328 PLN03156 GDSL esterase/lipase; 30.8 1.5E+02 0.0032 29.3 6.5 60 159-219 197-273 (351)
329 TIGR02638 lactal_redase lactal 30.7 3.1E+02 0.0068 27.0 8.8 51 147-210 6-57 (379)
330 COG0042 tRNA-dihydrouridine sy 30.6 2.4E+02 0.0052 27.8 7.9 49 160-217 155-203 (323)
331 TIGR01091 upp uracil phosphori 30.3 1.5E+02 0.0033 27.0 6.2 48 159-224 138-185 (207)
332 TIGR02109 PQQ_syn_pqqE coenzym 29.7 2.7E+02 0.0059 26.8 8.0 25 153-178 37-61 (358)
333 PLN02389 biotin synthase 29.3 1.4E+02 0.003 30.1 6.2 57 148-211 111-167 (379)
334 PRK14329 (dimethylallyl)adenos 29.2 1.5E+02 0.0033 30.3 6.6 74 131-212 170-255 (467)
335 TIGR01235 pyruv_carbox pyruvat 29.1 82 0.0018 36.4 5.0 134 153-324 686-832 (1143)
336 PF01791 DeoC: DeoC/LacD famil 28.9 86 0.0019 28.6 4.3 104 160-284 79-189 (236)
337 TIGR02103 pullul_strch alpha-1 28.8 1.6E+02 0.0036 33.3 7.1 95 187-283 389-516 (898)
338 TIGR01496 DHPS dihydropteroate 28.7 71 0.0015 30.3 3.9 101 153-264 20-123 (257)
339 TIGR02313 HpaI-NOT-DapA 2,4-di 28.6 1.2E+02 0.0027 28.9 5.5 31 147-178 73-103 (294)
340 TIGR01928 menC_lowGC/arch o-su 28.6 1.7E+02 0.0037 28.2 6.5 117 158-291 135-278 (324)
341 PRK12568 glycogen branching en 28.2 5.9E+02 0.013 28.4 11.1 106 158-268 270-413 (730)
342 PRK11815 tRNA-dihydrouridine s 28.2 3.3E+02 0.0072 26.7 8.4 117 158-283 152-274 (333)
343 PF03808 Glyco_tran_WecB: Glyc 28.1 3.9E+02 0.0085 23.5 8.2 45 158-217 35-79 (172)
344 PRK11858 aksA trans-homoaconit 28.1 93 0.002 31.0 4.7 87 148-269 137-223 (378)
345 PRK08649 inosine 5-monophospha 28.0 6.5E+02 0.014 25.5 10.6 22 158-179 142-163 (368)
346 PRK10933 trehalose-6-phosphate 28.0 2.2E+02 0.0048 30.0 7.6 61 158-224 34-106 (551)
347 cd06437 CESA_CaSu_A2 Cellulose 28.0 2.3E+02 0.0051 24.6 6.7 19 193-211 10-29 (232)
348 PRK12376 putative translaldola 28.0 66 0.0014 30.7 3.5 96 193-297 68-181 (236)
349 PLN02757 sirohydrochlorine fer 27.9 4.3E+02 0.0093 23.4 9.2 51 158-216 59-109 (154)
350 PRK05581 ribulose-phosphate 3- 27.9 4.2E+02 0.0092 23.3 9.9 53 148-211 8-61 (220)
351 cd07568 ML_beta-AS_like mammal 27.8 93 0.002 28.7 4.4 68 195-265 25-96 (287)
352 PRK09860 putative alcohol dehy 27.6 4.3E+02 0.0092 26.3 9.2 51 147-210 8-59 (383)
353 TIGR02660 nifV_homocitr homoci 27.5 94 0.002 30.7 4.6 98 160-280 75-184 (365)
354 PRK05301 pyrroloquinoline quin 27.5 2.9E+02 0.0063 26.9 7.9 25 153-178 46-70 (378)
355 PRK15454 ethanol dehydrogenase 27.4 4E+02 0.0087 26.7 9.0 56 146-214 25-81 (395)
356 TIGR02102 pullulan_Gpos pullul 27.4 1.6E+02 0.0036 34.1 7.0 52 127-180 451-503 (1111)
357 cd08551 Fe-ADH iron-containing 27.4 4.2E+02 0.0092 25.8 9.0 54 148-214 1-55 (370)
358 PRK05269 transaldolase B; Prov 27.4 90 0.0019 31.0 4.4 44 248-292 160-224 (318)
359 PF09419 PGP_phosphatase: Mito 27.3 1.1E+02 0.0025 27.7 4.7 46 165-217 35-84 (168)
360 COG1236 YSH1 Predicted exonucl 27.2 1.2E+02 0.0026 30.9 5.3 113 158-295 204-335 (427)
361 COG3868 Uncharacterized conser 27.2 1.8E+02 0.0038 29.3 6.3 102 160-285 92-199 (306)
362 PRK11858 aksA trans-homoaconit 27.1 1E+02 0.0023 30.7 4.9 98 160-280 78-187 (378)
363 COG2185 Sbm Methylmalonyl-CoA 27.1 71 0.0015 28.7 3.3 98 109-212 26-139 (143)
364 COG0399 WecE Predicted pyridox 27.1 4.1E+02 0.0089 27.1 9.1 115 131-277 97-240 (374)
365 cd08181 PPD-like 1,3-propanedi 27.0 4E+02 0.0087 26.1 8.8 57 147-216 3-60 (357)
366 KOG0133 Deoxyribodipyrimidine 27.0 65 0.0014 34.4 3.5 69 104-179 12-81 (531)
367 PRK14540 nucleoside diphosphat 26.9 36 0.00077 29.3 1.4 45 262-306 8-54 (134)
368 PRK09490 metH B12-dependent me 26.9 2.4E+02 0.0051 33.2 8.1 129 158-291 65-213 (1229)
369 COG0296 GlgB 1,4-alpha-glucan 26.8 2.4E+02 0.0052 30.9 7.7 76 151-229 159-244 (628)
370 PRK05692 hydroxymethylglutaryl 26.8 80 0.0017 30.4 3.9 81 152-266 151-231 (287)
371 KOG2804 Phosphorylcholine tran 26.8 59 0.0013 33.0 3.0 27 200-226 80-106 (348)
372 cd01568 QPRTase_NadC Quinolina 26.5 2E+02 0.0042 27.5 6.4 65 160-266 191-255 (269)
373 TIGR00677 fadh2_euk methylenet 26.5 5.9E+02 0.013 24.5 13.4 116 158-291 75-193 (281)
374 TIGR00591 phr2 photolyase PhrI 26.5 2E+02 0.0043 29.0 6.7 79 92-179 21-100 (454)
375 cd04882 ACT_Bt0572_2 C-termina 26.4 1.4E+02 0.003 20.9 4.1 40 246-286 11-63 (65)
376 PRK07259 dihydroorotate dehydr 25.9 2.3E+02 0.0051 26.8 6.8 112 158-288 170-292 (301)
377 TIGR00737 nifR3_yhdG putative 25.5 4.4E+02 0.0096 25.3 8.6 44 159-211 149-192 (319)
378 TIGR01515 branching_enzym alph 25.5 2.7E+02 0.0059 29.6 7.8 103 154-262 154-291 (613)
379 PRK09432 metF 5,10-methylenete 25.3 4.2E+02 0.0091 25.8 8.5 118 143-285 85-203 (296)
380 PF06908 DUF1273: Protein of u 25.0 51 0.0011 29.9 2.1 56 157-228 29-84 (177)
381 PRK00507 deoxyribose-phosphate 24.9 3.8E+02 0.0082 25.1 7.8 73 158-267 137-209 (221)
382 TIGR00067 glut_race glutamate 24.9 2.1E+02 0.0045 27.0 6.2 92 202-305 13-125 (251)
383 cd04722 TIM_phosphate_binding 24.8 3.8E+02 0.0082 22.0 7.1 46 163-220 77-122 (200)
384 cd01014 nicotinamidase_related 24.8 1.8E+02 0.0039 24.8 5.3 55 165-234 93-147 (155)
385 PRK10550 tRNA-dihydrouridine s 24.7 4.4E+02 0.0095 25.8 8.6 80 158-246 149-235 (312)
386 COG0686 Ald Alanine dehydrogen 24.6 51 0.0011 33.7 2.2 54 176-264 2-59 (371)
387 TIGR02884 spore_pdaA delta-lac 24.6 1.9E+02 0.0041 26.5 5.7 27 243-269 198-224 (224)
388 TIGR01496 DHPS dihydropteroate 24.5 90 0.0019 29.6 3.7 22 244-265 21-42 (257)
389 PRK00129 upp uracil phosphorib 24.5 2.2E+02 0.0047 26.0 6.1 47 159-223 140-186 (209)
390 PRK15447 putative protease; Pr 24.5 1.7E+02 0.0037 28.2 5.7 109 153-282 45-155 (301)
391 TIGR02090 LEU1_arch isopropylm 24.5 1.1E+02 0.0024 30.4 4.4 75 151-263 136-213 (363)
392 PRK14337 (dimethylallyl)adenos 24.4 6.6E+02 0.014 25.6 10.0 36 143-179 166-202 (446)
393 PRK10550 tRNA-dihydrouridine s 24.4 3.7E+02 0.0081 26.3 8.0 88 159-266 77-168 (312)
394 PF12965 DUF3854: Domain of un 24.4 59 0.0013 28.1 2.3 72 131-212 11-100 (130)
395 PLN02960 alpha-amylase 24.0 7.3E+02 0.016 28.6 11.0 107 158-269 417-562 (897)
396 TIGR02151 IPP_isom_2 isopenten 24.0 5.6E+02 0.012 25.1 9.1 20 160-179 193-212 (333)
397 PRK11890 phosphate acetyltrans 23.9 2E+02 0.0043 28.7 6.0 118 156-297 32-188 (312)
398 COG2110 Predicted phosphatase 23.8 1.1E+02 0.0023 28.3 3.9 58 159-224 103-160 (179)
399 PLN02371 phosphoglucosamine mu 23.7 7.2E+02 0.016 26.4 10.4 65 199-270 315-383 (583)
400 TIGR00109 hemH ferrochelatase. 23.4 98 0.0021 30.2 3.8 30 152-182 100-129 (322)
401 COG3581 Uncharacterized protei 23.3 64 0.0014 33.6 2.6 22 273-294 90-111 (420)
402 PF00809 Pterin_bind: Pterin b 23.3 79 0.0017 28.8 3.0 19 245-263 18-36 (210)
403 PHA03386 P10 fibrous body prot 23.2 85 0.0018 26.6 2.9 35 72-110 57-93 (94)
404 cd08193 HVD 5-hydroxyvalerate 23.1 5.9E+02 0.013 25.0 9.1 54 147-213 3-57 (376)
405 cd04724 Tryptophan_synthase_al 23.1 3.3E+02 0.0072 25.3 7.1 19 158-176 15-33 (242)
406 PRK14706 glycogen branching en 23.0 2.6E+02 0.0057 30.2 7.2 109 153-268 164-311 (639)
407 PRK14691 3-oxoacyl-(acyl carri 23.0 41 0.00089 33.1 1.2 25 262-286 198-222 (342)
408 COG0320 LipA Lipoate synthase 22.9 1.8E+02 0.0039 29.3 5.5 120 159-292 102-246 (306)
409 TIGR02403 trehalose_treC alpha 22.9 2.9E+02 0.0063 28.9 7.3 64 158-224 28-100 (543)
410 PRK04128 1-(5-phosphoribosyl)- 22.9 2.4E+02 0.0053 26.2 6.2 43 160-219 85-127 (228)
411 PRK01060 endonuclease IV; Prov 22.8 4.1E+02 0.0089 24.3 7.6 22 158-179 13-34 (281)
412 cd00316 Oxidoreductase_nitroge 22.6 2.2E+02 0.0047 27.5 6.0 53 241-293 130-188 (399)
413 PRK10674 deoxyribodipyrimidine 22.5 3.2E+02 0.0069 28.0 7.4 67 104-178 9-78 (472)
414 PTZ00413 lipoate synthase; Pro 22.5 1.8E+02 0.0039 30.2 5.6 57 153-217 177-233 (398)
415 PRK15072 bifunctional D-altron 22.5 7.9E+02 0.017 24.6 13.0 131 158-291 130-312 (404)
416 PRK07896 nicotinate-nucleotide 22.5 3.2E+02 0.0069 26.9 7.1 56 197-282 184-239 (289)
417 PRK09485 mmuM homocysteine met 22.3 2.2E+02 0.0047 27.5 5.9 121 158-281 46-176 (304)
418 TIGR02104 pulA_typeI pullulana 22.1 3.1E+02 0.0067 29.1 7.4 180 129-311 129-386 (605)
419 COG3010 NanE Putative N-acetyl 22.1 2.2E+02 0.0049 27.5 5.8 49 159-220 87-135 (229)
420 cd03174 DRE_TIM_metallolyase D 21.9 1.3E+02 0.0029 27.1 4.1 88 160-268 77-168 (265)
421 PF09587 PGA_cap: Bacterial ca 21.7 1.7E+02 0.0036 27.0 4.8 49 199-264 173-221 (250)
422 PRK00311 panB 3-methyl-2-oxobu 21.6 2E+02 0.0044 27.8 5.5 78 199-295 63-144 (264)
423 COG2040 MHT1 Homocysteine/sele 21.5 3.1E+02 0.0068 27.6 6.8 77 199-283 220-299 (300)
424 PLN02951 Molybderin biosynthes 21.5 4.5E+02 0.0097 26.3 8.0 45 152-209 89-133 (373)
425 PRK15108 biotin synthase; Prov 21.5 6.8E+02 0.015 24.7 9.2 95 153-285 76-185 (345)
426 PF09370 TIM-br_sig_trns: TIM- 21.5 55 0.0012 32.2 1.7 44 251-295 162-222 (268)
427 TIGR02401 trehalose_TreY malto 21.5 4E+02 0.0086 30.2 8.3 72 154-228 14-94 (825)
428 PF10881 DUF2726: Protein of u 21.3 3.1E+02 0.0067 22.6 5.9 108 159-283 12-125 (126)
429 cd04413 NDPk_I Nucleoside diph 21.2 51 0.0011 28.0 1.3 45 262-306 6-52 (130)
430 cd00740 MeTr MeTr subgroup of 21.2 69 0.0015 30.4 2.2 35 243-279 23-61 (252)
431 COG1519 KdtA 3-deoxy-D-manno-o 21.2 1.7E+02 0.0038 30.5 5.2 56 161-216 187-264 (419)
432 PLN02495 oxidoreductase, actin 21.1 4.7E+02 0.01 26.7 8.2 46 203-268 104-154 (385)
433 smart00562 NDK These are enzym 21.1 53 0.0011 27.7 1.3 44 262-305 6-51 (135)
434 cd00595 NDPk Nucleoside diphos 21.0 45 0.00099 28.3 0.9 44 262-305 6-51 (133)
435 PRK09140 2-dehydro-3-deoxy-6-p 21.0 2.8E+02 0.006 25.5 6.0 53 142-217 103-156 (206)
436 cd03411 Ferrochelatase_N Ferro 20.8 90 0.002 27.1 2.7 32 151-183 94-125 (159)
437 COG0035 Upp Uracil phosphoribo 20.7 2.9E+02 0.0063 26.4 6.2 48 158-223 139-187 (210)
438 TIGR02660 nifV_homocitr homoci 20.7 1.9E+02 0.004 28.7 5.2 89 148-271 134-222 (365)
439 cd07577 Ph0642_like Pyrococcus 20.5 1.2E+02 0.0027 27.4 3.7 70 194-266 13-82 (259)
440 PRK12344 putative alpha-isopro 20.4 1.4E+02 0.0031 31.3 4.5 99 162-280 90-200 (524)
441 PF10996 Beta-Casp: Beta-Casp 20.3 1E+02 0.0022 24.9 2.8 38 258-295 80-118 (126)
442 cd08185 Fe-ADH1 Iron-containin 20.2 6.5E+02 0.014 24.8 8.8 51 147-210 3-54 (380)
443 PF01729 QRPTase_C: Quinolinat 20.2 3.6E+02 0.0077 24.3 6.4 84 167-290 45-130 (169)
No 1
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00 E-value=3.4e-108 Score=781.26 Aligned_cols=222 Identities=60% Similarity=0.984 Sum_probs=216.3
Q ss_pred CCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCC
Q 020319 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD 182 (327)
Q Consensus 104 ~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~ 182 (327)
+|+||||+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||+| .+++++++++++||++|+|||++|+
T Consensus 1 ~R~RRlR~~~~~R~lv~Et~l~~~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~~v~lFgv~~~ 79 (320)
T cd04823 1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSID-ELLKEAEEAVDLGIPAVALFPVTPP 79 (320)
T ss_pred CCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHcCCCEEEEecCCCc
Confidence 5999999999999999999999999999999999975 7999999999999997 7999999999999999999999888
Q ss_pred CCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 020319 183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV 262 (327)
Q Consensus 183 ~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADi 262 (327)
++||+.||+|||+||+||||||+||++||||+|||||||||||+||||||++ +|.||||+||++|+||||+||+|||||
T Consensus 80 ~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~-~~~idND~Tl~~L~~~Avs~A~AGADi 158 (320)
T cd04823 80 ELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVR-DGGILNDETVEVLCKQALVQAEAGADI 158 (320)
T ss_pred ccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 8899999999999999999999999999999999999999999999999996 466999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCCCC
Q 020319 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS 327 (327)
Q Consensus 263 VAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp~~ 327 (327)
|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+.
T Consensus 159 VAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n 223 (320)
T cd04823 159 VAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPAN 223 (320)
T ss_pred EEcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999974
No 2
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-108 Score=779.34 Aligned_cols=226 Identities=52% Similarity=0.862 Sum_probs=219.2
Q ss_pred CCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeec
Q 020319 101 PLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 101 ~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgv 179 (327)
.+.+||||+|+++++|+|++||+|+++||||||||.||++ +++|+|||||||||+| .|++++++++++||++|+|||+
T Consensus 5 ~~~~R~RRlRk~~~~R~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d-~l~~~~~~~~~lGi~av~LFgv 83 (330)
T COG0113 5 FPFRRPRRLRKSPALRRLVRETRLTPNDLIYPIFVVEGENIKEEIPSMPGVYRYSLD-RLVEEAEELVDLGIPAVILFGV 83 (330)
T ss_pred chhhhhhhccCCHHHHHHHHhcCCCHHHeeEeEEEecCCCCccccCCCCCceeccHH-HHHHHHHHHHhcCCCEEEEeCC
Confidence 3458999999999999999999999999999999999985 7999999999999997 7999999999999999999998
Q ss_pred CCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC
Q 020319 180 VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG 259 (327)
Q Consensus 180 i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AG 259 (327)
+.+++||+.||+||||||+||||||.||+.||||+|||||||||||+||||||++++|+|+||+||++|+||||+||+||
T Consensus 84 p~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAG 163 (330)
T COG0113 84 PDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAG 163 (330)
T ss_pred CcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcC
Confidence 76678999999999999999999999999999999999999999999999999987779999999999999999999999
Q ss_pred CCeecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCCCC
Q 020319 260 ADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS 327 (327)
Q Consensus 260 ADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp~~ 327 (327)
||||||||||||||++||++||++||+||+||||||||||+||||||||++|+|+|||||||||||+.
T Consensus 164 AdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN 231 (330)
T COG0113 164 ADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPAN 231 (330)
T ss_pred CCeecccccccchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 3
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=100.00 E-value=7.9e-108 Score=780.21 Aligned_cols=224 Identities=55% Similarity=0.920 Sum_probs=203.3
Q ss_pred CCCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCC
Q 020319 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVP 181 (327)
Q Consensus 103 ~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~ 181 (327)
.+|+||+|+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||+|+
T Consensus 3 ~~R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid-~l~~~v~~~~~~GI~~v~lFgvi~ 81 (324)
T PF00490_consen 3 NTRPRRLRKNPALRDLVRETRLSPSDLIYPLFVVEGENEKEPISSMPGVYRYSID-SLVKEVEEAVDLGIRAVILFGVID 81 (324)
T ss_dssp SS-GGGGSSSHHHHHHHCST-B-GGGEEEEEEEESSSSSEEEETTSTTEEEEEHH-HHHHHHHHHHHTT--EEEEEEE-S
T ss_pred CccCCCCCCCHHHHHHHhcCCCCHHHeEEEEEEecCCCcceeccCCCCeeeeCHH-HHHHHHHHHHHCCCCEEEEEeeCC
Confidence 37999999999999999999999999999999999996 7999999999999997 799999999999999999999999
Q ss_pred CCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceee-cCCCccccHHHHHHHHHHHHHHHHcCC
Q 020319 182 DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV-REDGVIMNDETVHQLCKQAVSQARAGA 260 (327)
Q Consensus 182 ~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl-~~~G~IdND~Tv~~Lak~Als~A~AGA 260 (327)
+++||+.||+|||+||+||||||+||++||||+|||||||||||+||||||+ +++|.||||+||++|+||||+||+|||
T Consensus 82 ~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~A~AGA 161 (324)
T PF00490_consen 82 PSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDGEIDNDETLERLAKQALSHAEAGA 161 (324)
T ss_dssp CSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCCeEecHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999 579999999999999999999999999
Q ss_pred CeecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCCCC
Q 020319 261 DVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS 327 (327)
Q Consensus 261 DiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp~~ 327 (327)
|||||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+.
T Consensus 162 DiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N 228 (324)
T PF00490_consen 162 DIVAPSDMMDGRVGAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPAN 228 (324)
T ss_dssp SEEEE-S--TTHHHHHHHHHHHTTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-
T ss_pred CeeccccccCCHHHHHHHHHHhCCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999973
No 4
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00 E-value=4.3e-107 Score=774.96 Aligned_cols=222 Identities=54% Similarity=0.880 Sum_probs=216.0
Q ss_pred CCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecC
Q 020319 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV 180 (327)
Q Consensus 102 ~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi 180 (327)
+.+|+||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||+
T Consensus 4 ~~~R~RRlR~~~~~R~lv~Et~l~~~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~av~LFgv- 81 (323)
T PRK09283 4 PFTRPRRLRKTAALRRLVRETRLTPNDLIYPLFVVEGENEREEIPSMPGVYRLSID-LLVKEAEEAVELGIPAVALFGV- 81 (323)
T ss_pred cCcCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCc-
Confidence 448999999999999999999999999999999999986 8999999999999997 7999999999999999999997
Q ss_pred CCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCC
Q 020319 181 PDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGA 260 (327)
Q Consensus 181 ~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGA 260 (327)
| +.||+.||+|||+||+||||||+||++||||+|||||||||||+||||||+++ |.||||+||++|+||||+||+|||
T Consensus 82 ~-~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~-g~idND~Tl~~L~~~Al~~A~AGa 159 (323)
T PRK09283 82 P-ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILED-GYVDNDETLELLAKQALSQAEAGA 159 (323)
T ss_pred C-CCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccC-CcCcCHHHHHHHHHHHHHHHHhCC
Confidence 5 57999999999999999999999999999999999999999999999999975 999999999999999999999999
Q ss_pred CeecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCCCC
Q 020319 261 DVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS 327 (327)
Q Consensus 261 DiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp~~ 327 (327)
|||||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+.
T Consensus 160 DiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n 226 (323)
T PRK09283 160 DIVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPAN 226 (323)
T ss_pred CEEEcccccccHHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 5
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00 E-value=2.8e-106 Score=768.16 Aligned_cols=219 Identities=41% Similarity=0.705 Sum_probs=213.2
Q ss_pred CCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCC
Q 020319 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD 182 (327)
Q Consensus 104 ~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~ 182 (327)
+|+||||+++++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||+ |+
T Consensus 8 ~R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid-~l~~~~~~~~~~Gi~~v~lFgv-~~ 85 (322)
T PRK13384 8 RRLRRLRRSEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGISRLPES-ALADEIERLYALGIRYVMPFGI-SH 85 (322)
T ss_pred cCCCcCCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCceecCCCCCcceECHH-HHHHHHHHHHHcCCCEEEEeCC-CC
Confidence 6999999999999999999999999999999999985 7899999999999997 7999999999999999999997 64
Q ss_pred CCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 020319 183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV 262 (327)
Q Consensus 183 ~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADi 262 (327)
+||+.||+|||+||+||||||+||++||||+|||||||||||+||||||++ +|.||||+||++|+||||+||+|||||
T Consensus 86 -~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~-~g~i~ND~Tl~~L~~~Als~A~AGADi 163 (322)
T PRK13384 86 -HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLH-NDEVDNDATVENLVKQSVTAAKAGADM 163 (322)
T ss_pred -CCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHHHHHcCCCe
Confidence 699999999999999999999999999999999999999999999999996 589999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCCCC
Q 020319 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS 327 (327)
Q Consensus 263 VAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp~~ 327 (327)
|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+ ||||||||||+.
T Consensus 164 VAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~-gDrksYQmdp~n 227 (322)
T PRK13384 164 LAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELS-GDRKSYQLDYAN 227 (322)
T ss_pred EecccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCC-CCcccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999998 999999999974
No 6
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00 E-value=2.9e-106 Score=766.50 Aligned_cols=217 Identities=52% Similarity=0.867 Sum_probs=211.6
Q ss_pred CcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCC
Q 020319 107 RRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALK 185 (327)
Q Consensus 107 RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~K 185 (327)
||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||+ | ++|
T Consensus 1 RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d-~l~~~~~~~~~~Gi~~v~LFgv-~-~~K 77 (314)
T cd00384 1 RRLRRSPALRDLVRETRLSPDDLIYPLFVVEGIDEKEEISSMPGVYRLSVD-SLVEEAEELADLGIRAVILFGI-P-EHK 77 (314)
T ss_pred CCCCCChHHHHHHHcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEECC-C-CCC
Confidence 8999999999999999999999999999999985 7999999999999997 7999999999999999999997 6 469
Q ss_pred CcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 020319 186 SPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 186 D~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAP 265 (327)
|+.||+||||||+||||||+||++||||+|||||||||||+||||||++ +|+||||+||++|+||||+||+||||||||
T Consensus 78 d~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~-~~~idND~Tl~~L~k~Als~A~AGADiVAP 156 (314)
T cd00384 78 DEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILK-DDYVDNDATLELLAKIAVSHAEAGADIVAP 156 (314)
T ss_pred CCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCccHHHHHHHHHHHHHHHHcCCCeeec
Confidence 9999999999999999999999999999999999999999999999996 589999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCCCC
Q 020319 266 SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS 327 (327)
Q Consensus 266 SDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp~~ 327 (327)
||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||||+.
T Consensus 157 SdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan 218 (314)
T cd00384 157 SDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPAN 218 (314)
T ss_pred ccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999974
No 7
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00 E-value=1.2e-103 Score=749.80 Aligned_cols=216 Identities=40% Similarity=0.674 Sum_probs=209.1
Q ss_pred CChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc-
Q 020319 111 KSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPT- 188 (327)
Q Consensus 111 ~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~- 188 (327)
.|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||+.++++||+.
T Consensus 5 ~~~~~R~lv~Et~L~~~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d-~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~ 83 (320)
T cd04824 5 AHPLLRQWQSERTLTKSNLIYPIFITDNPDAKQPIDSLPGINRYGVN-RLEEFLRPLVAKGLRSVILFGVPLKPGKDDRS 83 (320)
T ss_pred CCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCCCccccCCcCc
Confidence 579999999999999999999999999985 7999999999999997 7999999999999999999998444569999
Q ss_pred cccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 189 GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 189 Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
||+|||+||+||||||+||++||||+|||||||||||+||||||++++|.||||+||++|+||||+||+|||||||||||
T Consensus 84 gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdM 163 (320)
T cd04824 84 GSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDM 163 (320)
T ss_pred cccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccc
Confidence 99999999999999999999999999999999999999999999977899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHCCC-CCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCCCC
Q 020319 269 MDGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRGSS 327 (327)
Q Consensus 269 MDGRV~aIR~aLD~~Gf-~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp~~ 327 (327)
|||||++||++||++|| ++|+|||||+||||+||||||||++|+|+|||||||||||+.
T Consensus 164 MDGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n 223 (320)
T cd04824 164 MDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGA 223 (320)
T ss_pred cccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcC
Confidence 99999999999999999 999999999999999999999999999999999999999974
No 8
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.2e-99 Score=709.27 Aligned_cols=236 Identities=63% Similarity=0.950 Sum_probs=228.4
Q ss_pred CCCCCCCCCcccCCCCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCCC-cccCCCCCceEecchhhHHHHHHH
Q 020319 87 KPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAK 165 (327)
Q Consensus 87 ~~~~~~g~p~~~~~~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~~-~~I~SMPGv~r~sid~~l~~ev~~ 165 (327)
+|+.|- +..|+++.+|++|.|.||.+|.|++||.|+|+||||||||+|++++ +||.||||+|||+|+ .|.+++++
T Consensus 2 ~~a~~l---~~~P~~~s~~l~~g~~~p~lR~~q~~~~is~~nliyPlFI~e~~dd~~pI~SmPg~~r~G~~-rL~e~l~p 77 (340)
T KOG2794|consen 2 KPATPL---IDQPLQLSRRLHRGYKHPLLRAWQQETNISPANLIYPLFIHEGEDDFTPIDSMPGIYRLGVN-RLKEELAP 77 (340)
T ss_pred CCCcch---hcCcccHHHHhhcCCCCHHHHHHhccCCCChhheeeeEEEecCcccccccccCCchhHHHHH-HHHHHHHH
Confidence 445555 7789999999999999999999999999999999999999999975 999999999999998 59999999
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHH
Q 020319 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETV 245 (327)
Q Consensus 166 ~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv 245 (327)
++++|+++|+|||++++..||++|++|+|+||||++||+.||+.||||+|+|||||||||+|||||||.|||.|+||+|+
T Consensus 78 lv~~Gl~sViLfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv 157 (340)
T KOG2794|consen 78 LVAKGLRSVILFGVVPEALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESV 157 (340)
T ss_pred HHHhccceEEEecCCCccccCcccccccCCCCcHHHHHHHHHHhCcceEEEeeeeeccccCCCccceecccccccCHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeeehhhhhhccccchhHHHhhcCCCCCCCcccCCCC
Q 020319 246 HQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQRG 325 (327)
Q Consensus 246 ~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~Sap~fGDRktYQmdp 325 (327)
++|+++|++||+||||||||||||||||+|||++|+++||++|+||||||||+|+||||||||++|+|+|||||+|||++
T Consensus 158 ~rlaevAv~yAkAGa~vVapSDmmDgRV~aIk~aL~~~~l~~vsvmSYsaKfas~fyGpFR~aa~saP~fgDrkcYQlP~ 237 (340)
T KOG2794|consen 158 HRLAEVAVSYAKAGADVVAPSDMMDGRVGAIKQALDAEGLQKVSVMSYSAKFASSFYGPFREAACSAPKFGDRKCYQLPA 237 (340)
T ss_pred HHHHHHHHHHHhcCCceecchHhhcchHHHHHHHHHHhcccceEEEeehhhhhhccccchHHHhhcCcccCCcceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 020319 326 S 326 (327)
Q Consensus 326 ~ 326 (327)
.
T Consensus 238 ~ 238 (340)
T KOG2794|consen 238 N 238 (340)
T ss_pred c
Confidence 4
No 9
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.85 E-value=0.25 Score=50.76 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe-eecccCC----CCCCccee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDPY----SSDGHDGI 232 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit-DVcLc~Y----TshGHcGI 232 (327)
+..+.++.+++.|+..|.|-- .+ | .+-.+...|+.||++||++.||+ ||+--+= -.-|-|+|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~----a~----~-----~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v 293 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDT----AH----G-----HQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEec----cC----C-----ccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEE
Confidence 467888899999999976632 21 1 14568889999999999999999 7753221 12366665
Q ss_pred ecC--CCc-----cccH---HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCcee
Q 020319 233 VRE--DGV-----IMND---ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSI 290 (327)
Q Consensus 233 l~~--~G~-----IdND---~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~I 290 (327)
--. .|. +... ..+..+.+.|-.-.+.|..+||=-.+... +-|.++|. .|-.-|.+
T Consensus 294 ~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~--~~~~~al~-~ga~~v~~ 358 (479)
T PRK07807 294 KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHP--RDVALALA-AGASNVMI 358 (479)
T ss_pred EECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCH--HHHHHHHH-cCCCeeec
Confidence 310 111 1111 12222333332223457767663333332 56777775 56544433
No 10
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=93.67 E-value=0.18 Score=50.39 Aligned_cols=119 Identities=21% Similarity=0.269 Sum_probs=81.9
Q ss_pred CceEecchhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 149 GCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 149 Gv~r~sid~~l~~ev~~~~~lGI~sVlL-Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
.=|-++.+ ++.++++++.+.|++-|++ +|.-|+ .+. + .....++.||+.||+|.|.+ ||.-
T Consensus 86 ~~y~Ls~e-eI~~~~~~~~~~G~~Evli~gG~~p~--~~~--------~-y~~~~~~~ik~~~p~~~i~a------~s~~ 147 (370)
T COG1060 86 KAYTLSPE-EILEEVREAVKRGITEVLIVGGEHPE--LSL--------E-YYEELFRTIKEEFPDLHIHA------LSAG 147 (370)
T ss_pred cccccCHH-HHHHHHHHHHHcCCeEEEEecCcCCC--cch--------H-HHHHHHHHHHHhCcchhhcc------cCHH
Confidence 44788886 7999999999999999988 665332 111 1 88899999999999876654 4432
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----------------ec-CCCCCCchHHHHHHHHHHCCCCCcee
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV----------------VS-PSDMMDGRVGAIRAALDAEGFQHVSI 290 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADi----------------VA-PSDMMDGRV~aIR~aLD~~Gf~~v~I 290 (327)
.=.-+- ..+.....+.+++|- +||.|- ++ |.---+.|+..++.|- +.|...++.
T Consensus 148 ei~~~~-~~~~~s~~E~l~~Lk-------~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah-~lGI~~tat 218 (370)
T COG1060 148 EILFLA-REGGLSYEEVLKRLK-------EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH-RLGIPTTAT 218 (370)
T ss_pred HhHHHH-hccCCCHHHHHHHHH-------HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCCccce
Confidence 211111 245677888888776 566552 23 2223356788888877 678888888
Q ss_pred eehh
Q 020319 291 MSYT 294 (327)
Q Consensus 291 MSYS 294 (327)
|-|-
T Consensus 219 ml~G 222 (370)
T COG1060 219 MLLG 222 (370)
T ss_pred eEEE
Confidence 8764
No 11
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=93.63 E-value=0.3 Score=48.64 Aligned_cols=70 Identities=29% Similarity=0.458 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHCCC--eeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc-CCCe--e---cCCCC-
Q 020319 198 LVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA-GADV--V---SPSDM- 268 (327)
Q Consensus 198 lV~rAIr~iK~~fPd--l~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~A-GADi--V---APSDM- 268 (327)
-..+|++++++.||+ +++-.|.- || ++ ++|+..|++ |.|+ | +|.|+
T Consensus 188 ~~~~A~~a~~~~~Pe~~~ivlVD~~--------------------~d-~~----~~al~~a~~~g~~l~gVRlDs~gdl~ 242 (352)
T PRK07188 188 DVVEACKAYHKTFPEDELIALVDYN--------------------ND-VI----TDSLKVAREFGDKLKGVRVDTSKNMI 242 (352)
T ss_pred cHHHHHHHHHHHCCCCCeEEEEecC--------------------cc-cH----HHHHHHHHHhCCCccEEEeCCcchHh
Confidence 457899999999997 66666621 11 11 367777888 9999 6 44564
Q ss_pred -------------------CCchHHHHHHHHHHCCCCCceeee
Q 020319 269 -------------------MDGRVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 269 -------------------MDGRV~aIR~aLD~~Gf~~v~IMS 292 (327)
+--.|..+|+.||++||.+|-|+.
T Consensus 243 DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~g~~~vkI~a 285 (352)
T PRK07188 243 DKYFIRHPEVLGTFDPRGVNPELIKALRKALDENGGKHVKIIV 285 (352)
T ss_pred hhhcccccccccccccccccHHHHHHHHHHHhhCCCCCcEEEE
Confidence 456788999999999999998885
No 12
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.65 E-value=1.3 Score=41.38 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC---CCeeEEeeecccCCCCCCcceeec
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVR 234 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f---Pdl~VitDVcLc~YTshGHcGIl~ 234 (327)
.+.+.++++.+.|+..|.|=....+..-...|.-..-+---..+-|++.++.. ++++|++=+ |.|.
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART--Da~~--------- 153 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART--DALL--------- 153 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc--Cchh---------
Confidence 47888999999999999983322111111112222222233345566666554 467777621 1121
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeeehhhh
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
.+...++...+.|..+++||||+|-+-..- ....|++..++ .+.+||-|..-
T Consensus 154 -----~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--~~~~~~~~~~~---~~~Pl~~~~~~ 205 (243)
T cd00377 154 -----AGEEGLDEAIERAKAYAEAGADGIFVEGLK--DPEEIRAFAEA---PDVPLNVNMTP 205 (243)
T ss_pred -----ccCCCHHHHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHhc---CCCCEEEEecC
Confidence 112235556668999999999999765444 45777777766 35677777533
No 13
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.36 E-value=1.3 Score=41.76 Aligned_cols=93 Identities=16% Similarity=0.320 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYS 225 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgv---------i~--~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YT 225 (327)
...+-++.+.+.|...|-|-+- -| +.-.|+.|..-.|.--++.+.|+++|+.+ +++.|..++..+.|.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 4666677788899999988542 11 33466777665565567788999999999 589999999887654
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 226 shGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
..| . |.+...+.+-...++|+|.|.
T Consensus 222 ~~g----------~----~~~e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 222 PGG----------L----TLEEAIEIAKALEEAGVDALH 246 (327)
T ss_pred CCC----------C----CHHHHHHHHHHHHHcCCCEEE
Confidence 322 2 233444456666789999995
No 14
>PRK08444 hypothetical protein; Provisional
Probab=91.71 E-value=0.68 Score=45.80 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=71.1
Q ss_pred CceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCC
Q 020319 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (327)
Q Consensus 149 Gv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshG 228 (327)
.-|.++.+ ++++.++++.+.|++.|.|=+-..+ +. +-.-+.++|+.||+.+|++-|-+ ||..=
T Consensus 76 ~~y~ls~e-eI~~~a~~a~~~G~~ei~iv~G~~p---~~-------~~e~y~e~ir~Ik~~~p~i~i~a------~s~~E 138 (353)
T PRK08444 76 NPYTMSHE-EILEIVKNSVKRGIKEVHIVSAHNP---NY-------GYEWYLEIFKKIKEAYPNLHVKA------MTAAE 138 (353)
T ss_pred ccccCCHH-HHHHHHHHHHHCCCCEEEEeccCCC---CC-------CHHHHHHHHHHHHHHCCCceEee------CCHHH
Confidence 44889986 7999999999999999998542111 11 12358899999999999876643 22110
Q ss_pred cceeecCCCccccHHHHHHHHHHHHH-HHHcCCCe--------ecCCCCCCchHHHHHHHHHHCCCC
Q 020319 229 HDGIVREDGVIMNDETVHQLCKQAVS-QARAGADV--------VSPSDMMDGRVGAIRAALDAEGFQ 286 (327)
Q Consensus 229 HcGIl~~~G~IdND~Tv~~Lak~Als-~A~AGADi--------VAPSDMMDGRV~aIR~aLD~~Gf~ 286 (327)
=.- +.+.-.+..++++.+|.+.-+. +--.||.+ |+|.-.-.=|...|.+..-+.|+.
T Consensus 139 i~~-~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~ 204 (353)
T PRK08444 139 VDF-LSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKM 204 (353)
T ss_pred HHH-HHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 000 0000113345666666554442 11223433 377776666666666666667773
No 15
>PRK12999 pyruvate carboxylase; Reviewed
Probab=90.12 E-value=0.66 Score=52.46 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=67.9
Q ss_pred HHHH-HHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 159 LVQE-VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 159 l~~e-v~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
++++ ++.+.+.|+.-|-+|-- ..| ---+.++|+.+|+. .. ++.+|+| ||.+ |+|...
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~----lnd---------~~~~~~~i~~vk~~--g~--~~~~~i~-ytg~----~~d~~~ 685 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDS----LNW---------VENMRVAIDAVRET--GK--IAEAAIC-YTGD----ILDPAR 685 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEecc----CCh---------HHHHHHHHHHHHHc--CC--eEEEEEE-EEec----CCCCCC
Confidence 4554 99999999999999942 122 12288899999887 33 6678887 7622 222111
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
. --|++.+.+.|-...++|||+|+=.||.= -.|.+||+.+
T Consensus 686 ~---~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 686 A---KYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV 733 (1146)
T ss_pred C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc
Confidence 1 13677777888888899999999999964 4677888775
No 16
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=89.64 E-value=3.8 Score=34.70 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCC--eeEEeeecccCCCCCCcceeecC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPd--l~VitDVcLc~YTshGHcGIl~~ 235 (327)
.+.+.++.+.+.|+..|.+.| +.++.+++..++ +.|++=+. ..|
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g----------------------~~i~~~~~~~~~~~~~v~~~v~--~~~---------- 59 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP----------------------GYVRLAADALAGSDVPVIVVVG--FPT---------- 59 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH----------------------HHHHHHHHHhCCCCCeEEEEec--CCC----------
Confidence 578888899999999999887 566667666654 55554221 111
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeec---CCCC-----CCchHHHHHHHHHHCCCCCceeeehh
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVS---PSDM-----MDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVA---PSDM-----MDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
+. .+.+...+.+-...++|||.|. |-.- .++-+..+++..++. =.+.+||-|-
T Consensus 60 -~~----~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~ 120 (201)
T cd00945 60 -GL----TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL 120 (201)
T ss_pred -CC----CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE
Confidence 11 2344444556666777888764 2210 255566666666653 1134666555
No 17
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=89.33 E-value=2.3 Score=43.96 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=68.5
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEee-cCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCc
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFg-vi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGH 229 (327)
++++.+ +++++++.+.+.|++.+.|.+ .-| . ..+-.-+.++|+.||+.+++..-+.-|++.
T Consensus 113 ~~Ls~E-EI~~ea~~~~~~G~~~i~LvsGe~p---~-------~~~~eyi~e~i~~I~~~~~~~g~i~~v~in------- 174 (469)
T PRK09613 113 KKLTQE-EIREEVKALEDMGHKRLALVAGEDP---P-------NCDIEYILESIKTIYSTKHGNGEIRRVNVN------- 174 (469)
T ss_pred eECCHH-HHHHHHHHHHHCCCCEEEEEeCCCC---C-------CCCHHHHHHHHHHHHHhccccCcceeeEEE-------
Confidence 678886 799999999999999999943 211 1 123346789999999876543333233332
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCee------------------cCCCCCCchHHHHHHHHHHCCCCCcee
Q 020319 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVV------------------SPSDMMDGRVGAIRAALDAEGFQHVSI 290 (327)
Q Consensus 230 cGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiV------------------APSDMMDGRV~aIR~aLD~~Gf~~v~I 290 (327)
.|.+ +.+.+ -.+.+||+|.+ .|..=-|=|+.+++.+. ++|+.+|.+
T Consensus 175 ig~l-------t~eey-------~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~-~aGi~~Vg~ 238 (469)
T PRK09613 175 IAPT-------TVENY-------KKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAM-EAGIDDVGI 238 (469)
T ss_pred eecC-------CHHHH-------HHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHH-HcCCCeeCe
Confidence 2222 22222 23355666552 35555778999999988 689976544
No 18
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=89.00 E-value=1.1 Score=43.31 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=43.0
Q ss_pred ceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 150 v~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
.|+++.+ +++++++++.++|++.|.|-+-..+ ..+...+.+.++.||+.+|++-+.+
T Consensus 67 ~y~ls~e-eI~e~~~~~~~~G~~~i~l~gG~~p----------~~~~~~~~~i~~~Ik~~~~~i~~~~ 123 (343)
T TIGR03551 67 AYLLSLE-EIAERAAEAWKAGATEVCIQGGIHP----------DLDGDFYLDILRAVKEEVPGMHIHA 123 (343)
T ss_pred cccCCHH-HHHHHHHHHHHCCCCEEEEEeCCCC----------CCCHHHHHHHHHHHHHHCCCceEEe
Confidence 4788986 7999999999999999988642111 1122466889999999999876544
No 19
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=88.86 E-value=2.5 Score=45.04 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=87.2
Q ss_pred CCCcCCCChhhHh-hhccCCCCCCCceeeEEEeeCCCCcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCC
Q 020319 105 RPRRNRKSPAMRA-SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA 183 (327)
Q Consensus 105 R~RRlR~~~~lR~-l~~Et~Ls~~dLI~PlFV~eg~~~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~ 183 (327)
-.|-++-+||-|= .+++. + |+-.+. .++. |. .++|...|+ |+-+...++.+.+.||.-+-+|--
T Consensus 54 ~~rfl~edpwerl~~~r~~-~-pnt~lq-mL~R-g~------N~vGy~~~~-d~vv~~~v~~a~~~Gidv~Rifd~---- 118 (596)
T PRK14042 54 CLRFLKEDPWSRLRQLRQA-L-PNTQLS-MLLR-GQ------NLLGYRNYA-DDVVRAFVKLAVNNGVDVFRVFDA---- 118 (596)
T ss_pred eecccCCCHHHHHHHHHHh-C-CCCceE-EEec-cc------cccccccCC-hHHHHHHHHHHHHcCCCEEEEccc----
Confidence 4688888888651 14442 1 333332 2222 22 247777776 444556888899999998888853
Q ss_pred CCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 184 LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 184 ~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
+|+---+.++|+.+|+. .. .+-.|+| ||.. | --|++.+.+.|-...++|||+|
T Consensus 119 ---------lnd~~n~~~~i~~~k~~--G~--~~~~~i~-yt~s-p------------~~t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 119 ---------LNDARNLKVAIDAIKSH--KK--HAQGAIC-YTTS-P------------VHTLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred ---------CcchHHHHHHHHHHHHc--CC--EEEEEEE-ecCC-C------------CCCHHHHHHHHHHHHHcCCCEE
Confidence 44445567799999986 23 3344444 5541 1 1267777788888889999999
Q ss_pred cCCCCCC--------chHHHHHHHH
Q 020319 264 SPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 264 APSDMMD--------GRV~aIR~aL 280 (327)
+=.||.= =.|.+||+.+
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~ 196 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQAT 196 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhc
Confidence 9999974 3577888775
No 20
>PRK05927 hypothetical protein; Provisional
Probab=88.69 E-value=0.77 Score=45.30 Aligned_cols=115 Identities=21% Similarity=0.342 Sum_probs=73.6
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEE----eeec-cc
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY----TDVA-LD 222 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi----tDVc-Lc 222 (327)
+.-|.++.+ ++++.++++.+.|++.|.|=|=.. +. -+-..+.++|+.||+.||++.+- +.++ +|
T Consensus 71 ~~~y~ls~e-ei~~~a~~~~~~G~~~i~i~gG~~-----p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~ 139 (350)
T PRK05927 71 SDAYLLSFD-EFRSLMQRYVSAGVKTVLLQGGVH-----PQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAA 139 (350)
T ss_pred ccccccCHH-HHHHHHHHHHHCCCCEEEEeCCCC-----CC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHH
Confidence 455889986 799999999999999988633211 11 12346889999999999998662 1111 11
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCC--------CeecCCCC-CCchHHHHHHHHHHCCCC
Q 020319 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGA--------DVVSPSDM-MDGRVGAIRAALDAEGFQ 286 (327)
Q Consensus 223 ~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~-AGA--------DiVAPSDM-MDGRV~aIR~aLD~~Gf~ 286 (327)
. ..| +..++++++|.+.-+..-- .|+ ++++|..+ -|-|+..||.+= +.|+.
T Consensus 140 --------~---~~G-~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~-~lGi~ 200 (350)
T PRK05927 140 --------Q---VSG-ISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAH-RLGFR 200 (350)
T ss_pred --------H---hcC-CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHH-HcCCC
Confidence 0 113 2335666655443331111 022 68999887 499999999764 67883
No 21
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=88.18 E-value=4.9 Score=40.76 Aligned_cols=48 Identities=25% Similarity=0.254 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 157 ~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
....++++.+++.|+.-|.+= ..+ | .+ --+.+.|+.||++||++.|++
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd----~a~----g---~~--~~~~~~i~~i~~~~~~~~vi~ 270 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVID----SSH----G---HS--IYVIDSIKEIKKTYPDLDIIA 270 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEE----CCC----C---cH--hHHHHHHHHHHHhCCCCCEEE
Confidence 346889999999999987762 222 2 11 137789999999999988887
No 22
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=87.56 E-value=3.5 Score=42.32 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=69.3
Q ss_pred CCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
+.|..+|+ |+-+.+.++.+.+.|+..|-+|--+.+ . . -+.++|+..|+.- +.+ .+|+| ||.
T Consensus 87 ~~G~~~~p-ddvv~~~v~~A~~~Gvd~irif~~lnd----~-----~----n~~~~v~~ak~~G--~~v--~~~i~-~t~ 147 (448)
T PRK12331 87 LLGYRNYA-DDVVESFVQKSVENGIDIIRIFDALND----V-----R----NLETAVKATKKAG--GHA--QVAIS-YTT 147 (448)
T ss_pred ccccccCc-hhhHHHHHHHHHHCCCCEEEEEEecCc----H-----H----HHHHHHHHHHHcC--CeE--EEEEE-eec
Confidence 46777776 335677889999999999999864332 1 1 1777899888873 222 33332 443
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
. .. .|++.+.+.|-...++|||.|+=.||.= -.|.+||+.+
T Consensus 148 ~----------p~---~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 148 S----------PV---HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV 196 (448)
T ss_pred C----------CC---CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc
Confidence 1 11 3566677777777899999999999975 3566777765
No 23
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=87.55 E-value=4 Score=42.14 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCC-----CCCccee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS-----SDGHDGI 232 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YT-----shGHcGI 232 (327)
+..+.++.+++.|++.|.|=. .+ |- .-.+.++|+.||+.||++.||++-|...-+ ..|=++|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~----a~----g~-----~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDT----AH----GH-----QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeC----CC----CC-----cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEE
Confidence 467888999999999977632 21 11 145788999999999999999984432211 2344444
Q ss_pred ec--CCCcc-----ccH---HHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceeeeh
Q 020319 233 VR--EDGVI-----MND---ETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMSY 293 (327)
Q Consensus 233 l~--~~G~I-----dND---~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~IMSY 293 (327)
-- ..|.+ ..+ .++.-+.+.|-...+.|..||| ||.| +-|-++| ..|-.-|.+=++
T Consensus 292 ~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~via-----dGgi~~~~di~kal-a~GA~~vm~g~~ 359 (475)
T TIGR01303 292 KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWA-----DGGVRHPRDVALAL-AAGASNVMVGSW 359 (475)
T ss_pred EECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEE-----eCCCCCHHHHHHHH-HcCCCEEeechh
Confidence 20 01221 122 3444455555555566888887 7766 4677777 466655554333
No 24
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=87.48 E-value=1.1 Score=42.58 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=42.7
Q ss_pred CceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 149 Gv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
..|+++.+ +++++++++.+.|++.|.|-+-.... . +..-+.+.++.||+.+|++-+.+
T Consensus 32 ~~~~ls~e-eI~~~~~~~~~~G~~~i~l~gg~~~~-~---------~~~~~~~i~~~Ik~~~~~i~~~~ 89 (309)
T TIGR00423 32 DAYVLSLE-EILEKVKEAVAKGATEVCIQGGLNPQ-L---------DIEYYEELFRAIKQEFPDVHIHA 89 (309)
T ss_pred CcccCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC-C---------CHHHHHHHHHHHHHHCCCceEEe
Confidence 35678986 79999999999999999986421111 1 12357889999999999876543
No 25
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=87.48 E-value=3.1 Score=43.53 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=72.3
Q ss_pred CCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
++|...|. |+-+.+.++.+++.||.-|-+|--+. +---+..+|+.+|+.- ..+..-+| ||.
T Consensus 88 ~vGy~~y~-ddvv~~fv~~a~~~Gidi~RIfd~ln-------------dv~nl~~ai~~vk~ag--~~~~~~i~---yt~ 148 (499)
T PRK12330 88 LLGYRHYE-DEVVDRFVEKSAENGMDVFRVFDALN-------------DPRNLEHAMKAVKKVG--KHAQGTIC---YTV 148 (499)
T ss_pred cCCccCcc-hhHHHHHHHHHHHcCCCEEEEEecCC-------------hHHHHHHHHHHHHHhC--CeEEEEEE---Eec
Confidence 47766666 44577788999999999999996422 1145778999999874 23333444 443
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
. .+. |++.+++.|-...++|||.|+=.||.= =.|.+||+.+
T Consensus 149 s----------p~~---t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~ 197 (499)
T PRK12330 149 S----------PIH---TVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEAC 197 (499)
T ss_pred C----------CCC---CHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhC
Confidence 2 122 777888888888899999999999974 3567777776
No 26
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=87.47 E-value=3.7 Score=39.73 Aligned_cols=91 Identities=21% Similarity=0.164 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCCCeEEE----eecCCCCCCCcccccCcCCCCcHHHHHHHHHHH--CCCeeEEeeecccCCCCCCcce
Q 020319 158 GLVQEVAKARDVGVNSVVL----FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlL----Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~--fPdl~VitDVcLc~YTshGHcG 231 (327)
.+.+.++++.+.|+..|.| ||.-..+. ...|+...-+..-..+-|++.++. -++++|++=+ |.|..
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~-~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART--Da~~~----- 164 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKKNSLF-GNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV--ESLIL----- 164 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCcccccc-CCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec--ccccc-----
Confidence 4778889999999999998 55411110 111111222333456667777765 3678887622 12210
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
..| -|++++ .|..|++||||+|-+-
T Consensus 165 ---~~~---~~eAi~----Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 165 ---GKG---MEDALK----RAEAYAEAGADGIMIH 189 (285)
T ss_pred ---cCC---HHHHHH----HHHHHHHcCCCEEEec
Confidence 011 145555 6889999999999875
No 27
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.46 E-value=2.4 Score=41.94 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe-eec
Q 020319 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVA 220 (327)
Q Consensus 158 ~l~~ev~~~~~lGI--~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit-DVc 220 (327)
+-.+++.++++.|+ ..|.| +-.+ -....+++.|+.||+++|++.||+ ||+
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~i----D~a~---------gh~~~~~e~I~~ir~~~p~~~vi~g~V~ 149 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITI----DIAH---------GHSDSVINMIQHIKKHLPETFVIAGNVG 149 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEE----ECCC---------CchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 35788999999976 65554 2121 234578889999999999988888 665
No 28
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=87.03 E-value=3.6 Score=38.76 Aligned_cols=123 Identities=20% Similarity=0.309 Sum_probs=71.6
Q ss_pred hhHhhhccCCCCCCCceeeEEEeeCCC--CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCc-ccc
Q 020319 114 AMRASFQETNLSPANFVYPLFIHEGEE--DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSP-TGD 190 (327)
Q Consensus 114 ~lR~l~~Et~Ls~~dLI~PlFV~eg~~--~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~-~Gs 190 (327)
.+|++.+-+. .||.|.-... +.+. .+.+.++++.+.|+-.|.| .+ .|+. .+.
T Consensus 60 ~~~~I~~~~~-------iPv~vD~d~GyG~~~~-------------~v~~tv~~~~~aG~agi~I----ED-q~~~~~~~ 114 (238)
T PF13714_consen 60 AVRRIARAVS-------IPVIVDADTGYGNDPE-------------NVARTVRELERAGAAGINI----ED-QRCGHGGK 114 (238)
T ss_dssp HHHHHHHHSS-------SEEEEE-TTTSSSSHH-------------HHHHHHHHHHHCT-SEEEE----ES-BSTTTSTT
T ss_pred HHHHHHhhhc-------CcEEEEcccccCchhH-------------HHHHHHHHHHHcCCcEEEe----ec-cccCCCCC
Confidence 4555555553 7997763322 2232 3788899999999999887 22 2322 111
Q ss_pred cCcCCCCcHHHHHHHHHHHC--CCeeEEe--eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 191 EAYNDNGLVPRTIWLLKDRY--PDLVIYT--DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 191 ~A~n~~glV~rAIr~iK~~f--Pdl~Vit--DVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
.-. +-.-...=||++++.- ++++|++ |..+. +...++.-.+-+..|++||||+|-+-
T Consensus 115 ~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~------------------~~~~~deaI~R~~aY~eAGAD~ifi~ 175 (238)
T PF13714_consen 115 QLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLR------------------AEEGLDEAIERAKAYAEAGADMIFIP 175 (238)
T ss_dssp -B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCH------------------HHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred cee-CHHHHHHHHHHHHHhccCCeEEEEEecccccc------------------CCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 112 1122223345555433 6788875 33221 45555666667899999999999988
Q ss_pred CCCC-chHHHHHHHH
Q 020319 267 DMMD-GRVGAIRAAL 280 (327)
Q Consensus 267 DMMD-GRV~aIR~aL 280 (327)
.+.+ ..|..|.+.+
T Consensus 176 ~~~~~~~i~~~~~~~ 190 (238)
T PF13714_consen 176 GLQSEEEIERIVKAV 190 (238)
T ss_dssp TSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc
Confidence 8775 4677777776
No 29
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=86.41 E-value=8.4 Score=37.21 Aligned_cols=95 Identities=14% Similarity=0.277 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHcCCCeEEEee-c----------CCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFP-K----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFg-v----------i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YT 225 (327)
+..+.++.+.+.|...|-|-+ . ..+.-.|+.|..-.|.--++...|++||+.++ |..|..|+...+|.
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 466667788899999998852 0 12345677777666777788899999999995 89999998875542
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 226 shGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
. +| .+-++++ +.+-.+.++|.|+|.=|
T Consensus 235 ~---------~g-~~~~e~~----~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 235 E---------GG-WDLEDSV----ELAKALKELGVDLIDVS 261 (336)
T ss_pred C---------CC-CCHHHHH----HHHHHHHHcCCCEEEEC
Confidence 1 12 2223333 34444568899999843
No 30
>PRK08508 biotin synthase; Provisional
Probab=86.06 E-value=10 Score=35.87 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=41.0
Q ss_pred CceE-ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 149 GCYR-LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 149 Gv~r-~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
..|+ ++.+ +++++++++.+.|+..|.+..- -....+ ..--.+.+.++.||+++|++.+.+
T Consensus 35 ~~y~~~s~e-eI~~~a~~a~~~g~~~~~lv~s-g~~~~~-------~~~e~~~ei~~~ik~~~p~l~i~~ 95 (279)
T PRK08508 35 KRYKRKDIE-QIVQEAKMAKANGALGFCLVTS-GRGLDD-------KKLEYVAEAAKAVKKEVPGLHLIA 95 (279)
T ss_pred ccccCCCHH-HHHHHHHHHHHCCCCEEEEEec-cCCCCc-------ccHHHHHHHHHHHHhhCCCcEEEe
Confidence 3566 5876 7999999999999999987421 000010 011357889999999999876543
No 31
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=85.02 E-value=4.3 Score=37.87 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc 220 (327)
-+++++++++.|..=|.|=.. .-..| -.+.+-|+.||++| .++|+|+.
T Consensus 53 T~~ev~~l~~aGadIIAlDaT-----------~R~Rp-~~l~~li~~i~~~~--~l~MADis 100 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDAT-----------DRPRP-ETLEELIREIKEKY--QLVMADIS 100 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-S-----------SSS-S-S-HHHHHHHHHHCT--SEEEEE-S
T ss_pred CHHHHHHHHHcCCCEEEEecC-----------CCCCC-cCHHHHHHHHHHhC--cEEeeecC
Confidence 489999999999998888542 12344 67889999999999 99999974
No 32
>PRK08445 hypothetical protein; Provisional
Probab=84.91 E-value=3.3 Score=40.73 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=45.5
Q ss_pred CCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
-++-|.++.+ ++++.++++.+.|.+.|.+-|-.++. + +-.-+.+.++.||+++|++-+.+
T Consensus 67 ~~~~y~l~~e-eI~~~~~~a~~~g~~~i~~~gg~~~~---------~-~~e~~~~l~~~Ik~~~p~i~~~a 126 (348)
T PRK08445 67 EDDAYILSFE-EIDKKIEELLAIGGTQILFQGGVHPK---------L-KIEWYENLVSHIAQKYPTITIHG 126 (348)
T ss_pred CCCCeeCCHH-HHHHHHHHHHHcCCCEEEEecCCCCC---------C-CHHHHHHHHHHHHHHCCCcEEEE
Confidence 3577888986 79999999999999998775421221 1 12356789999999999988865
No 33
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.44 E-value=12 Score=34.73 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=38.1
Q ss_pred cchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccC
Q 020319 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (327)
Q Consensus 154 sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~ 223 (327)
+.+ +.++.++.+.+.||+.|=+ +. . .++ -.++|+.++++||++.|-+|.=+++
T Consensus 25 ~~~-~a~~i~~al~~~Gi~~iEi-tl-----~--------~~~--~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 25 KLE-DAVPLAKALVAGGLPVLEV-TL-----R--------TPA--ALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred CHH-HHHHHHHHHHHcCCCEEEE-ec-----C--------Ccc--HHHHHHHHHHHCCCCEEEEeeccCH
Confidence 344 5889999999999997654 21 1 111 3479999999999999988655443
No 34
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=84.33 E-value=4.8 Score=42.63 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec--ccCCCCCCcceee
Q 020319 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA--LDPYSSDGHDGIV 233 (327)
Q Consensus 156 d~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc--Lc~YTshGHcGIl 233 (327)
|+-+.+.++.+.+.|+..|-+|--+.+ . --+.++|+..|+.- +.|..-+| .|||
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~lnd----~---------~n~~~~i~~ak~~G--~~v~~~i~~t~~p~--------- 145 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALND----P---------RNLQAAIQAAKKHG--AHAQGTISYTTSPV--------- 145 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCc----H---------HHHHHHHHHHHHcC--CEEEEEEEeccCCC---------
Confidence 333566788999999999999953322 1 12777888888874 33332232 2333
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHH
Q 020319 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAAL 280 (327)
Q Consensus 234 ~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG--------RV~aIR~aL 280 (327)
.|++.+.+.+-...++|||.|+-.||.=. .|.+||+.+
T Consensus 146 ---------~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 146 ---------HTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF 191 (582)
T ss_pred ---------CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC
Confidence 26677777777788899999999999753 567777765
No 35
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.17 E-value=11 Score=38.48 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe-eecccC----CCCCCcce
Q 020319 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDP----YSSDGHDG 231 (327)
Q Consensus 157 ~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit-DVcLc~----YTshGHcG 231 (327)
.+-.++++.+++.|+.-|.| +..+ | ..--+...|+.||++||++.||+ ||+-=+ --..|-|+
T Consensus 152 ~~~~~~v~~lv~aGvDvI~i----D~a~----g-----~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~ 218 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVI----DSAH----G-----HSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADC 218 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEE----ECCC----C-----CChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCE
Confidence 34679999999999998777 1111 1 12346789999999999986644 654211 11135555
Q ss_pred eecC--CCcc------cc--HHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCce
Q 020319 232 IVRE--DGVI------MN--DETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVS 289 (327)
Q Consensus 232 Il~~--~G~I------dN--D~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~ 289 (327)
|.-. .|.+ +. ..++..+...+-...+-|..|| +||.| +-|.++|. .|=.-|.
T Consensus 219 I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVI-----AdGGI~~~~Di~KALa-lGA~aVm 283 (404)
T PRK06843 219 LKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICII-----ADGGIRFSGDVVKAIA-AGADSVM 283 (404)
T ss_pred EEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEE-----EeCCCCCHHHHHHHHH-cCCCEEE
Confidence 5311 1111 11 1223333222222234466665 59977 56777884 6654443
No 36
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=83.90 E-value=2.6 Score=41.13 Aligned_cols=59 Identities=27% Similarity=0.398 Sum_probs=44.6
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
++-|+++++ +++++++++.+.|++.|.|-+-..+.. +-.-+.+.++.||+.+|++-+.+
T Consensus 74 ~~~y~l~~e-eI~~~a~~~~~~G~~~v~l~~G~~p~~----------~~~~~~e~i~~Ik~~~p~i~i~~ 132 (351)
T TIGR03700 74 PGAYAMSLE-EIVARVKEAYAPGATEVHIVGGLHPNL----------PFEWYLDMIRTLKEAYPDLHVKA 132 (351)
T ss_pred cccCCCCHH-HHHHHHHHHHHCCCcEEEEecCCCCCC----------CHHHHHHHHHHHHHHCCCceEEe
Confidence 457778986 799999999999999998865322211 11258899999999999887654
No 37
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=83.74 E-value=4.6 Score=41.98 Aligned_cols=114 Identities=21% Similarity=0.234 Sum_probs=80.1
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcc
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHc 230 (327)
||+--|+-+-+.++.+++.||.-|=+|-- .|+..=++.||+++|+.--. +..=+| ||..=
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFDA-------------lND~RNl~~ai~a~kk~G~h--~q~~i~---YT~sP-- 151 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFDA-------------LNDVRNLKTAIKAAKKHGAH--VQGTIS---YTTSP-- 151 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEechh-------------ccchhHHHHHHHHHHhcCce--eEEEEE---eccCC--
Confidence 45544655667788999999998888852 56566789999999986432 222222 65542
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH------CCCCCceeeehhh
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA------EGFQHVSIMSYTA 295 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~------~Gf~~v~IMSYSA 295 (327)
--|++...+.|-.+++.|+|.|+--||-- --|.+||+.++- +--+.+++|+|-+
T Consensus 152 -----------vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylk 219 (472)
T COG5016 152 -----------VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLK 219 (472)
T ss_pred -----------cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHH
Confidence 23788999999999999999999999842 258888888752 1113456677753
No 38
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=83.70 E-value=5.8 Score=37.96 Aligned_cols=109 Identities=24% Similarity=0.291 Sum_probs=69.1
Q ss_pred CceEecchhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 149 GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 149 Gv~r~sid~~l~~ev~~~~~-lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
|=|.-+.+ ..++.+.++++ .|..+|-|=+ | .-...-|++++++ .+-|+..+-|-|=|.+
T Consensus 83 g~y~~~~~-~av~~a~r~~~~aGa~aVkiEd----------~-------~~~~~~I~al~~a--gipV~gHiGL~pq~~~ 142 (254)
T cd06557 83 GSYQTSPE-QALRNAARLMKEAGADAVKLEG----------G-------AEVAETIRALVDA--GIPVMGHIGLTPQSVN 142 (254)
T ss_pred CcccCCHH-HHHHHHHHHHHHhCCeEEEEcC----------c-------HHHHHHHHHHHHc--CCCeeccccccceeee
Confidence 55555554 57777777776 8888877622 1 1455667777755 2446666666666555
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHH
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aL 280 (327)
--.|..- .| ..|+..+.+.+.|..+.+||||+|=...+=.--...|.+.|
T Consensus 143 ~~gg~~~-~g--rt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v 192 (254)
T cd06557 143 QLGGYKV-QG--KTEEEAERLLEDALALEEAGAFALVLECVPAELAKEITEAL 192 (254)
T ss_pred ccCCcee-cc--CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC
Confidence 4433331 12 35777899999999999999999876666333444444444
No 39
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.19 E-value=12 Score=36.32 Aligned_cols=93 Identities=13% Similarity=0.218 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgv---------i~--~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YT 225 (327)
...+-++.+.+.|...|-|-+- -| +.-.|+.|-.--|.--++.+.|++||++.+ ++.|..|+..++|.
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 3555566788899999988421 12 233477775555666778889999999995 79999999876654
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 226 shGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
.- | .+.+++ .+.+-.+.++|.|.|.
T Consensus 230 ~~---------g-~~~eea----~~ia~~Le~~Gvd~ie 254 (338)
T cd04733 230 RG---------G-FTEEDA----LEVVEALEEAGVDLVE 254 (338)
T ss_pred CC---------C-CCHHHH----HHHHHHHHHcCCCEEE
Confidence 22 2 233443 3455566789999997
No 40
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=83.08 E-value=22 Score=34.76 Aligned_cols=101 Identities=23% Similarity=0.317 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCccccc---CcCCCCcHHHHHHHHHHH--CCCeeEEeeecccCCCCCCccee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~---A~n~~glV~rAIr~iK~~--fPdl~VitDVcLc~YTshGHcGI 232 (327)
.+.+.++++.+.|+-.|.|=-.+.+ +| +|.. ...+-.-..+=|++.++. -+|++|++=+ |.|..+
T Consensus 94 ~v~r~V~~~~~aGaagi~IEDq~~p-K~--cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~~----- 163 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHIEDQVGA-KR--CGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART--DALAVE----- 163 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCc-cc--cCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec--Cccccc-----
Confidence 3778899999999999988221111 12 2321 122222344556666654 3788888622 233222
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHH
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD 281 (327)
| =|++++ -|..|++||||+|-+-.+=| ...||+.-.
T Consensus 164 ----g---~deAI~----Ra~aY~eAGAD~ifi~~~~~--~~~i~~~~~ 199 (292)
T PRK11320 164 ----G---LDAAIE----RAQAYVEAGADMIFPEAMTE--LEMYRRFAD 199 (292)
T ss_pred ----C---HHHHHH----HHHHHHHcCCCEEEecCCCC--HHHHHHHHH
Confidence 2 256666 48899999999998765543 445554443
No 41
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=83.03 E-value=9 Score=36.89 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=67.1
Q ss_pred CceEecchhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 149 GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 149 Gv~r~sid~~l~~ev~~~~~-lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
|-|..+.+ ..++.+.++++ .|..+|-|=+ | .-...-|+++.+. .+-|+.=+-|-|=|.|
T Consensus 86 g~y~~~~~-~av~~a~r~~~~aGa~aVkiEd----------g-------~~~~~~I~al~~a--gIpV~gHiGL~pq~~~ 145 (264)
T PRK00311 86 GSYQASPE-QALRNAGRLMKEAGAHAVKLEG----------G-------EEVAETIKRLVER--GIPVMGHLGLTPQSVN 145 (264)
T ss_pred CCccCCHH-HHHHHHHHHHHHhCCeEEEEcC----------c-------HHHHHHHHHHHHC--CCCEeeeecccceeec
Confidence 66665654 45666666666 8888877622 1 1244556666655 3445555555555554
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHH
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aL 280 (327)
--.|..- .| ..|+..+.+.+.|..+.+||||+|=....=.--..+|.+.|
T Consensus 146 ~~gg~~i-~g--rt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l 195 (264)
T PRK00311 146 VLGGYKV-QG--RDEEAAEKLLEDAKALEEAGAFALVLECVPAELAKEITEAL 195 (264)
T ss_pred ccCCeee-ec--CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC
Confidence 4333332 23 35677899999999999999999877666333444455544
No 42
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=82.55 E-value=10 Score=36.90 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCc---ccccCcCCCCcHHHHHHHHHHH--CCCeeEEeeecccCCCCCCcceee
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSP---TGDEAYNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDGHDGIV 233 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~---~Gs~A~n~~glV~rAIr~iK~~--fPdl~VitDVcLc~YTshGHcGIl 233 (327)
+.+.|+++.+.|+-.|.|=-.+-+ +|.. .|....-+-....+=|+++++. -||++|++=+ |.|.. |
T Consensus 92 v~~tV~~~~~aGvagi~IEDq~~p-k~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ART--Da~~~-~----- 162 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVMEDKTFP-KDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV--EALIA-G----- 162 (290)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCC-cccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEe--ccccc-c-----
Confidence 667788999999999887221111 1100 0111111111234556666654 3688888632 22310 1
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCC-chHHHHHHHH
Q 020319 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMD-GRVGAIRAAL 280 (327)
Q Consensus 234 ~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD-MMD-GRV~aIR~aL 280 (327)
.| -|+++++ |-.|++||||+|=+-. +-| -.|.++.+.+
T Consensus 163 --~g---~deAI~R----a~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~ 202 (290)
T TIGR02321 163 --LG---QQEAVRR----GQAYEEAGADAILIHSRQKTPDEILAFVKSW 202 (290)
T ss_pred --CC---HHHHHHH----HHHHHHcCCCEEEecCCCCCHHHHHHHHHhc
Confidence 12 1778875 7889999999997654 333 2444444444
No 43
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.05 E-value=43 Score=31.07 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC---CCeeEEeee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---PDLVIYTDV 219 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f---Pdl~VitDV 219 (327)
.+++.++.+++.||+.+=+ + ..+ .+ .-++|+.|+++| |+++|-+=.
T Consensus 26 ~a~~~~~al~~~Gi~~iEi----t--~~~---------~~-a~~~i~~l~~~~~~~p~~~vGaGT 74 (213)
T PRK06552 26 EALKISLAVIKGGIKAIEV----T--YTN---------PF-ASEVIKELVELYKDDPEVLIGAGT 74 (213)
T ss_pred HHHHHHHHHHHCCCCEEEE----E--CCC---------cc-HHHHHHHHHHHcCCCCCeEEeeee
Confidence 5888999999999998765 1 111 11 236999999999 578877643
No 44
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=81.97 E-value=9.1 Score=36.21 Aligned_cols=107 Identities=24% Similarity=0.386 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
+.+..++-+++-||++|=+ + +.++ .. -++|++|+++||+++|-+ |
T Consensus 26 ~a~~~a~Ali~gGi~~IEI----T--l~sp---------~a-~e~I~~l~~~~p~~lIGA-------------------G 70 (211)
T COG0800 26 EALPLAKALIEGGIPAIEI----T--LRTP---------AA-LEAIRALAKEFPEALIGA-------------------G 70 (211)
T ss_pred HHHHHHHHHHHcCCCeEEE----e--cCCC---------CH-HHHHHHHHHhCcccEEcc-------------------c
Confidence 5888889999999999865 2 1221 22 359999999999887765 8
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCe-ecCCC--------------CCCc--hHHHHHHHHHHCCCCCceeee----hhhh
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADV-VSPSD--------------MMDG--RVGAIRAALDAEGFQHVSIMS----YTAK 296 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADi-VAPSD--------------MMDG--RV~aIR~aLD~~Gf~~v~IMS----YSAK 296 (327)
.|.|.+++++ .++|||+. |+|.= .|-| .-..|=.+| +.|++-+=+.. =..+
T Consensus 71 TVL~~~q~~~-------a~~aGa~fiVsP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Al-e~G~~~lK~FPa~~~Gg~~ 142 (211)
T COG0800 71 TVLNPEQARQ-------AIAAGAQFIVSPGLNPEVAKAANRYGIPYIPGVATPTEIMAAL-ELGASALKFFPAEVVGGPA 142 (211)
T ss_pred cccCHHHHHH-------HHHcCCCEEECCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHH-HcChhheeecCccccCcHH
Confidence 8999887764 46789984 56642 1222 234455555 56765443332 2567
Q ss_pred hhccccchhHH
Q 020319 297 YASSFYGPFRE 307 (327)
Q Consensus 297 yASsfYGPFRd 307 (327)
|-+++.|||-+
T Consensus 143 ~~ka~~gP~~~ 153 (211)
T COG0800 143 MLKALAGPFPQ 153 (211)
T ss_pred HHHHHcCCCCC
Confidence 88888999876
No 45
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=81.74 E-value=4 Score=39.61 Aligned_cols=67 Identities=27% Similarity=0.348 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCC-CeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC---CCeecCCCCCCch--
Q 020319 199 VPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG---ADVVSPSDMMDGR-- 272 (327)
Q Consensus 199 V~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AG---ADiVAPSDMMDGR-- 272 (327)
+.+|++.+|+.+| +.-|+. .+|+-++ .+++|+..+++| +|+| |.|-.
T Consensus 170 ~~~A~~~~~~~~p~~~~i~v--------------------evdt~~~---~v~eal~~~~~~~~~~d~I----~lDn~~~ 222 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIA--------------------LIDTFND---EKEEALKAAKALGDKLDGV----RLDTPSS 222 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEE--------------------EEeecCc---chHHHHHHHHHhCCCCcEE----EECCCCC
Confidence 6789999999998 322221 1111111 235677777885 8888 66665
Q ss_pred --------HHHHHHHHHHCCCCCceeee
Q 020319 273 --------VGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 273 --------V~aIR~aLD~~Gf~~v~IMS 292 (327)
+..+|++||+.|+.++-|..
T Consensus 223 ~~G~~~~~~~~~~~~l~~~g~~~~~iea 250 (302)
T cd01571 223 RRGVFRYLIREVRWALDIRGYKHVKIFV 250 (302)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 99999999999987776654
No 46
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=81.64 E-value=3.7 Score=41.01 Aligned_cols=141 Identities=20% Similarity=0.294 Sum_probs=90.2
Q ss_pred CCCCcccCCCCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEee-----CCCCcccCCCCC-----ceEecch--hhH
Q 020319 92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHE-----GEEDTPIGAMPG-----CYRLGWR--HGL 159 (327)
Q Consensus 92 ~g~p~~~~~~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~e-----g~~~~~I~SMPG-----v~r~sid--~~l 159 (327)
.|.=+|-|=+|.- - +-.++|+.+-++-+..+=.|+.-=+.- |+=.+...|=|. -||+... .+.
T Consensus 153 AGADiVAPSdMMD----G-rV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eA 227 (320)
T cd04824 153 AGAHIVAPSDMMD----G-RVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLA 227 (320)
T ss_pred hCCCEEecccccc----c-HHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHH
Confidence 3545565556631 1 224788888777764444444432210 111233333332 2333221 247
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec---CC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR---ED 236 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~---~~ 236 (327)
+.|++.-++-|-.-+|+=|- .+.-.-||.+|++||++-|.+ |.-.|--..+. ++
T Consensus 228 lre~~~D~~EGAD~lMVKPa-----------------l~YLDIi~~~k~~~~~~Pvaa------YqVSGEYaMikaAa~~ 284 (320)
T cd04824 228 LRAVERDVSEGADMIMVKPG-----------------TPYLDIVREAKDKHPDLPLAV------YHVSGEYAMLHAAAEA 284 (320)
T ss_pred HHHHHhhHHhCCCEEEEcCC-----------------chHHHHHHHHHHhccCCCEEE------EEccHHHHHHHHHHHc
Confidence 88888888899888887443 456779999999999888877 99999888874 47
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
|.+|-++. +.+.-++..+||||+|
T Consensus 285 G~iDe~~~---~~Esl~~ikRAGAd~I 308 (320)
T cd04824 285 GAFDLKRA---VLEAMTGFRRAGADII 308 (320)
T ss_pred CCCcHHHH---HHHHHHHHHhcCCCEE
Confidence 88885432 3356688999999986
No 47
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=81.62 E-value=15 Score=35.26 Aligned_cols=136 Identities=21% Similarity=0.336 Sum_probs=84.4
Q ss_pred ccCCCCCceEec--ch---hhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeE
Q 020319 143 PIGAMPGCYRLG--WR---HGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (327)
Q Consensus 143 ~I~SMPGv~r~s--id---~~l~~ev~~~~~lGI~sVlL--Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~V 215 (327)
.++.|||=.+|+ ++ +..+++++.+.+.|+.+||+ |+-.|= .|+ .+-+-. -.+-+.++.+|+.+ ++-+
T Consensus 10 HL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py-~~~-~~~etv---aaM~~i~~~v~~~~-~~p~ 83 (254)
T PF03437_consen 10 HLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPY-PKR-VGPETV---AAMARIAREVRREV-SVPV 83 (254)
T ss_pred cCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCc-cCC-CCHHHH---HHHHHHHHHHHHhC-CCCE
Confidence 456788887775 21 23677788899999999999 332332 122 121111 23556778888886 3222
Q ss_pred EeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHc-CCCee----------cCCCCCCchHHHHHHHHHH
Q 020319 216 YTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARA-GADVV----------SPSDMMDGRVGAIRAALDA 282 (327)
Q Consensus 216 itDVcLc~YTshGHcGI--l~~~G~IdND~Tv~~Lak~Als~A~A-GADiV----------APSDMMDGRV~aIR~aLD~ 282 (327)
|| |+. |+.+++ +.|.| |||.| ++.++++|+-+.+=..-..
T Consensus 84 ---------------GVnvL~n----d~~aal--------aiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~ 136 (254)
T PF03437_consen 84 ---------------GVNVLRN----DPKAAL--------AIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKR 136 (254)
T ss_pred ---------------EeeeecC----CCHHHH--------HHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHH
Confidence 32 221 344444 34443 77754 6999999987777555556
Q ss_pred CCCCCceeeehhhhhhccccch--hHHHhhcC
Q 020319 283 EGFQHVSIMSYTAKYASSFYGP--FREALDSN 312 (327)
Q Consensus 283 ~Gf~~v~IMSYSAKyASsfYGP--FRdAa~Sa 312 (327)
-|-. |.|+..-.+-.|+..++ +.+++.++
T Consensus 137 l~a~-v~ilaDV~~kh~~~l~~~~~~~~~~~a 167 (254)
T PF03437_consen 137 LGAD-VKILADVHVKHSSPLATRDLEEAAKDA 167 (254)
T ss_pred cCCC-eEEEeeechhhcccCCCCCHHHHHHHH
Confidence 6776 99999876655555554 77776654
No 48
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=81.06 E-value=19 Score=37.50 Aligned_cols=113 Identities=24% Similarity=0.276 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe-eecccC----CCCCCccee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDP----YSSDGHDGI 232 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit-DVcLc~----YTshGHcGI 232 (327)
+-.+.++.|++.|+.-|.|=- + ....--+...|+.||++||++.||+ ||+--+ --..|=|+|
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~--~-----------~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i 314 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS--S-----------QGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGL 314 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC--C-----------CCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEE
Confidence 468999999999998876621 1 1122335578999999999877764 654211 001344444
Q ss_pred ecC--CCc-----------cccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCce
Q 020319 233 VRE--DGV-----------IMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS 289 (327)
Q Consensus 233 l~~--~G~-----------IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~ 289 (327)
.-. .|. .....++..+.+.+ .+-+..|||=..+..+ +.|.++| +.|-.-|.
T Consensus 315 ~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~---~~~~vpVIadGGI~~~--~di~kAl-a~GA~~V~ 378 (505)
T PLN02274 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVASIA---AQHGVPVIADGGISNS--GHIVKAL-TLGASTVM 378 (505)
T ss_pred EECCCCCccccCccccccCCCcccHHHHHHHHH---HhcCCeEEEeCCCCCH--HHHHHHH-HcCCCEEE
Confidence 210 010 11233455554443 2347777776666665 5677777 46764443
No 49
>PRK07360 FO synthase subunit 2; Reviewed
Probab=80.99 E-value=3.5 Score=40.66 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=43.5
Q ss_pred CceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEE
Q 020319 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (327)
Q Consensus 149 Gv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi 216 (327)
..|+++.+ ++++.++++.+.|++.|.|-+=..+..+ +-.-+.+.|+.||+.||++-+.
T Consensus 87 ~~y~ls~e-eI~~~a~~a~~~G~~~i~l~~G~~p~~~---------~~e~~~~~i~~ik~~~~~i~i~ 144 (371)
T PRK07360 87 GAFWLTIA-EILEKAAEAVKRGATEVCIQGGLHPAAD---------SLEFYLEILEAIKEEFPDIHLH 144 (371)
T ss_pred CCeeCCHH-HHHHHHHHHHhCCCCEEEEccCCCCCCC---------cHHHHHHHHHHHHHhCCCccee
Confidence 55788986 7999999999999999998653111111 2345789999999999987654
No 50
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.83 E-value=7.2 Score=39.36 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecC
Q 020319 158 GLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 158 ~l~~ev~~~~~l--GI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
+-.+.+++++++ |+..|.| +.+ .-..--+.++|+.||++||++.||+
T Consensus 108 ~d~er~~~L~~~~~g~D~ivi----D~A---------hGhs~~~i~~ik~ik~~~P~~~vIa------------------ 156 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICI----DVA---------NGYSEHFVQFVAKAREAWPDKTICA------------------ 156 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEE----ECC---------CCcHHHHHHHHHHHHHhCCCCcEEE------------------
Confidence 446777788884 7777655 222 2223457889999999999988886
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeec----CCCC-----C----CchHHHHHHHHHHCCCCCceeee
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVS----PSDM-----M----DGRVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVA----PSDM-----M----DGRV~aIR~aLD~~Gf~~v~IMS 292 (327)
|-|- |-+ +|..+.+||||+|= |-.+ . -.++.||.+.=+.+--.+++|++
T Consensus 157 -GNV~---T~e----~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIA 218 (346)
T PRK05096 157 -GNVV---TGE----MVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVS 218 (346)
T ss_pred -eccc---CHH----HHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEe
Confidence 3332 322 56667789999982 3222 1 24778888777665444667765
No 51
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.58 E-value=12 Score=33.21 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc-----cCCCCCCccee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL-----DPYSSDGHDGI 232 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL-----c~YTshGHcGI 232 (327)
++++.++.+.+.|++.|-+ . .|+.. ....|+.+++.+|++.|.+...+ +..-..|=++|
T Consensus 17 ~~~~~~~~l~~~G~~~vev----~--~~~~~----------~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i 80 (190)
T cd00452 17 DALALAEALIEGGIRAIEI----T--LRTPG----------ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFI 80 (190)
T ss_pred HHHHHHHHHHHCCCCEEEE----e--CCChh----------HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE
Confidence 5889999999999998665 1 23221 44599999999999877765555 33334555666
Q ss_pred e
Q 020319 233 V 233 (327)
Q Consensus 233 l 233 (327)
.
T Consensus 81 ~ 81 (190)
T cd00452 81 V 81 (190)
T ss_pred E
Confidence 5
No 52
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=80.57 E-value=14 Score=35.89 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccC---cCCCCcHHHHHHHHHHHC--CCeeEEeeecccCCCCCCccee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA---YNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A---~n~~glV~rAIr~iK~~f--Pdl~VitDVcLc~YTshGHcGI 232 (327)
.+.+.++++.+.|+-.|.|=-.+.+ +| +|... .-+-.-...-|++.++.. +|++|++=+ |.|...
T Consensus 89 ~v~~tv~~~~~aG~agi~IEDq~~p-K~--cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~~----- 158 (285)
T TIGR02317 89 NVARTVREMEDAGAAAVHIEDQVLP-KR--CGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART--DARAVE----- 158 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCc-cc--cCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc--Cccccc-----
Confidence 3678899999999999888221111 12 22211 112222344466666543 678888632 233211
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aL 280 (327)
| =|++++ -+..|++||||+|=+-.+-+ -.+..+.+.+
T Consensus 159 ----g---~deAI~----Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 159 ----G---LDAAIE----RAKAYVEAGADMIFPEALTSLEEFRQFAKAV 196 (285)
T ss_pred ----C---HHHHHH----HHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc
Confidence 2 256666 48899999999998765554 3445555554
No 53
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=80.54 E-value=3.6 Score=39.04 Aligned_cols=61 Identities=28% Similarity=0.450 Sum_probs=43.7
Q ss_pred CCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHH
Q 020319 196 NGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA 275 (327)
Q Consensus 196 ~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~a 275 (327)
.|. ++|+.||+.|||-.|.+|.-. +| -|. ..+++| ++||||++.=|.+.| +..
T Consensus 42 eG~--~aV~~lr~~~pd~~IvAD~Kt-----------~D-~G~--------~e~~ma---~~aGAd~~tV~g~A~--~~T 94 (217)
T COG0269 42 EGM--RAVRALRELFPDKIIVADLKT-----------AD-AGA--------IEARMA---FEAGADWVTVLGAAD--DAT 94 (217)
T ss_pred hhH--HHHHHHHHHCCCCeEEeeeee-----------cc-hhH--------HHHHHH---HHcCCCEEEEEecCC--HHH
Confidence 365 899999999999999999753 22 343 334444 789999999999887 445
Q ss_pred HHHHHHHC
Q 020319 276 IRAALDAE 283 (327)
Q Consensus 276 IR~aLD~~ 283 (327)
|.+++.++
T Consensus 95 I~~~i~~A 102 (217)
T COG0269 95 IKKAIKVA 102 (217)
T ss_pred HHHHHHHH
Confidence 55555443
No 54
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=80.39 E-value=21 Score=37.02 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+.++.++.+++.|+..|.|=. . .|... .+...|+.||++||++.|++
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~----a----~G~s~-----~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDS----S----QGNSI-----YQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEec----C----CCCch-----HHHHHHHHHHhhCCCceEEE
Confidence 458899999999999877622 1 12111 23569999999999988887
No 55
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.30 E-value=7.2 Score=34.61 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=55.8
Q ss_pred ccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeeccc
Q 020319 143 PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222 (327)
Q Consensus 143 ~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc 222 (327)
.+..|||+. + .+|+.++.+.|...|.+||. .+. -...++.+++.+|++-+++
T Consensus 97 ~~~~i~gv~----t---~~e~~~A~~~Gad~i~~~p~--------------~~~--g~~~~~~l~~~~~~~p~~a----- 148 (190)
T cd00452 97 GIPLLPGVA----T---PTEIMQALELGADIVKLFPA--------------EAV--GPAYIKALKGPFPQVRFMP----- 148 (190)
T ss_pred CCcEECCcC----C---HHHHHHHHHCCCCEEEEcCC--------------ccc--CHHHHHHHHhhCCCCeEEE-----
Confidence 467788885 2 57888999999999999973 111 3457899999998765554
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 020319 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (327)
Q Consensus 223 ~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD 270 (327)
. |-| |.+.+ -.++++|||.|+=+.+.-
T Consensus 149 ------------~-GGI-~~~n~-------~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 149 ------------T-GGV-SLDNA-------AEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred ------------e-CCC-CHHHH-------HHHHHCCCEEEEEchhcc
Confidence 2 445 44444 457789999998776643
No 56
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=79.69 E-value=25 Score=34.47 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccC---cCCCCcHHHHHHHHHHHC--CCeeEEeeecccCCCCCCcceee
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA---YNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGIV 233 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A---~n~~glV~rAIr~iK~~f--Pdl~VitDVcLc~YTshGHcGIl 233 (327)
+...|+++.+.|+-.|.|=-.+.+ +| +|-.. .-+-.-..+-|++.++.- +|++|++=+ |.+..
T Consensus 94 v~r~V~~~~~aGaagi~IEDq~~p-K~--cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART--Da~~~------- 161 (294)
T TIGR02319 94 VWRATREFERVGIVGYHLEDQVNP-KR--CGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART--DARES------- 161 (294)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCc-cc--cCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe--ccccc-------
Confidence 567789999999999887221111 11 22111 112223345566666543 678888622 12311
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 020319 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (327)
Q Consensus 234 ~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aL 280 (327)
.| -|++++ -+..|++||||+|-+-.+-| -.|..+.+.+
T Consensus 162 --~g---~deaI~----Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 162 --FG---LDEAIR----RSREYVAAGADCIFLEAMLDVEEMKRVRDEI 200 (294)
T ss_pred --CC---HHHHHH----HHHHHHHhCCCEEEecCCCCHHHHHHHHHhc
Confidence 12 266666 48899999999998765544 2344444443
No 57
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=79.00 E-value=7.2 Score=40.58 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
-+...++.+++.||.-+-+|-. .|+---+.++|+.+|+.-- .+. +|+| ||..
T Consensus 106 vv~~fv~~a~~~Gidi~Rifd~-------------lnd~~n~~~ai~~ak~~G~--~~~--~~i~-yt~s---------- 157 (468)
T PRK12581 106 IVDKFISLSAQNGIDVFRIFDA-------------LNDPRNIQQALRAVKKTGK--EAQ--LCIA-YTTS---------- 157 (468)
T ss_pred HHHHHHHHHHHCCCCEEEEccc-------------CCCHHHHHHHHHHHHHcCC--EEE--EEEE-EEeC----------
Confidence 3555678899999999888852 4555667889999998743 222 3443 5441
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHH
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAA 279 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~a 279 (327)
-..|++.+.++|-...++|||.|+-.||.= =.|.+||+.
T Consensus 158 ---p~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~ 204 (468)
T PRK12581 158 ---PVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM 204 (468)
T ss_pred ---CcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc
Confidence 133777888888888899999999999964 245566654
No 58
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=78.72 E-value=35 Score=32.32 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccC---CCCCCcceeec
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP---YSSDGHDGIVR 234 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~---YTshGHcGIl~ 234 (327)
.+.+.++++.+.|...|-|=+- . -....|+.+++.- +.|++=+-+-| -+..|+-+..
T Consensus 90 ~~~~~~~~l~~aGa~gv~iED~----------~-------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~- 149 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIEGG----------E-------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQY- 149 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEcCc----------H-------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeec-
Confidence 4788899999999999887221 1 1344678887764 55655333222 1222332222
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeeeh-hhhhhccccchhHHHhhc
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYGPFREALDS 311 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSY-SAKyASsfYGPFRdAa~S 311 (327)
...+.++.+.+.|..|++||||+|=.-.+ | ...|++.-++ -+++++.. +.+++..=+=.+.|.++-
T Consensus 150 -----~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-~--~e~~~~i~~~---~~~P~~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 150 -----RGDEAGEQLIADALAYAPAGADLIVMECV-P--VELAKQITEA---LAIPLAGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred -----cCHHHHHHHHHHHHHHHHcCCCEEEEcCC-C--HHHHHHHHHh---CCCCEEEEecCcCCCceEEeHHhhhcc
Confidence 23456888888999999999999988744 4 4455554444 24566553 334444444444566554
No 59
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=78.42 E-value=9.8 Score=37.16 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+..+.++.+++.|+..|.|-- . .|.. ..+.+.|+.||+++|++.|++
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~----~----~G~~-----~~~~~~i~~ik~~~p~v~Vi~ 140 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDS----A----HGHS-----VYVIEMIKFIKKKYPNVDVIA 140 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEEC----C----CCCc-----HHHHHHHHHHHHHCCCceEEE
Confidence 357888899999998877622 1 1111 245678999999999888775
No 60
>PRK09234 fbiC FO synthase; Reviewed
Probab=78.30 E-value=4.9 Score=44.44 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=46.0
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
++.|+++.+ +++++++++.++|++.|.+-+-+.++ ++ ---+.+.++.||+++|++-|.+
T Consensus 552 ~~~y~Ls~e-eI~~~a~ea~~~G~tev~i~gG~~p~---------~~-~~~y~~lir~IK~~~p~i~i~a 610 (843)
T PRK09234 552 ADAYTLSLD-EVADRAWEAWVAGATEVCMQGGIHPE---------LP-GTGYADLVRAVKARVPSMHVHA 610 (843)
T ss_pred CCcccCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC---------cC-HHHHHHHHHHHHHhCCCeeEEe
Confidence 468899986 79999999999999999986543221 11 1257789999999999988843
No 61
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=78.06 E-value=23 Score=35.06 Aligned_cols=103 Identities=21% Similarity=0.317 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCc--ccccCcCCCCcHHHHHHHHHHHCC--CeeEEeeecccCCCCCCcceeec
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSP--TGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVR 234 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~--~Gs~A~n~~glV~rAIr~iK~~fP--dl~VitDVcLc~YTshGHcGIl~ 234 (327)
+...++++.+.|+-.+-|=-.+-+ +|-. .|.+=++.+- ..+=|+++|+.-+ +++|++=+ + .++.
T Consensus 95 vartV~~~~~aG~agi~iEDq~~p-k~cgh~~gk~l~~~~e-~v~rIkAa~~a~~~~~fvi~ART------d----a~~~ 162 (289)
T COG2513 95 VARTVRELEQAGAAGIHIEDQVGP-KRCGHLPGKELVSIDE-MVDRIKAAVEARRDPDFVIIART------D----ALLV 162 (289)
T ss_pred HHHHHHHHHHcCcceeeeeecccc-hhcCCCCCCCcCCHHH-HHHHHHHHHHhccCCCeEEEeeh------H----HHHh
Confidence 788899999999999876221111 1100 1222233332 2344677776664 78887621 1 1111
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
+| -|++++ -|..|.+||||+|=|-.|-| ...||+..++-
T Consensus 163 -~~---ld~AI~----Ra~AY~eAGAD~if~~al~~--~e~i~~f~~av 201 (289)
T COG2513 163 -EG---LDDAIE----RAQAYVEAGADAIFPEALTD--LEEIRAFAEAV 201 (289)
T ss_pred -cc---HHHHHH----HHHHHHHcCCcEEccccCCC--HHHHHHHHHhc
Confidence 12 356666 68899999999999999998 77777666554
No 62
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=77.58 E-value=3.4 Score=38.85 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC-----CCC-CCc--hHHHHHHHHHHCCCCCceeeehhhh
Q 020319 243 ETVHQLCKQAVSQARAGADVVSP-----SDM-MDG--RVGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 243 ~Tv~~Lak~Als~A~AGADiVAP-----SDM-MDG--RV~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
.|+=--..||+.-|+|||+.||| .|+ .|| .|..|++.++..|+ ++-||+=|-|
T Consensus 110 ~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~-~tkILaAS~r 170 (222)
T PRK12656 110 ATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENS-DSKILAASFK 170 (222)
T ss_pred EeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCC-CCEEEEEecC
Confidence 33334456999999999999999 222 243 48889999999988 6888865543
No 63
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=77.52 E-value=10 Score=33.47 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc-cCCCCCCcceeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL-DPYSSDGHDGIVRED 236 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL-c~YTshGHcGIl~~~ 236 (327)
+.++.++.+ +-|+..|-+ |+.-..+.| .+.|+.||+.+|+..+++|+-+ ++.+
T Consensus 13 ~a~~~~~~l-~~~v~~iev------------~~~l~~~~g--~~~i~~l~~~~~~~~i~~d~k~~d~~~----------- 66 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEI------------GTPLIKNEG--IEAVKEMKEAFPDRKVLADLKTMDAGE----------- 66 (206)
T ss_pred HHHHHHHHc-ccCeeEEEe------------CCHHHHHhC--HHHHHHHHHHCCCCEEEEEEeeccchH-----------
Confidence 466666666 777765444 222233445 4799999999999889999843 2221
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCC
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGF 285 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG-RV~aIR~aLD~~Gf 285 (327)
.++-..+++|||+|.-.-...+ .+..+-+...+.|.
T Consensus 67 -------------~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~ 103 (206)
T TIGR03128 67 -------------YEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGK 103 (206)
T ss_pred -------------HHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCC
Confidence 1344467888887753333232 45555555556664
No 64
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=77.36 E-value=31 Score=34.94 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHcC--CCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEee
Q 020319 158 GLVQEVAKARDVG--VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (327)
Q Consensus 158 ~l~~ev~~~~~lG--I~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitD 218 (327)
+-.+.++.+++.| +..|.| +.+ .| ..-.+.+.|+.||+.||++.||+=
T Consensus 107 ~d~er~~~L~~a~~~~d~ivi----D~A----hG-----hs~~~i~~ik~ir~~~p~~~viaG 156 (343)
T TIGR01305 107 NDLEKMTSILEAVPQLKFICL----DVA----NG-----YSEHFVEFVKLVREAFPEHTIMAG 156 (343)
T ss_pred HHHHHHHHHHhcCCCCCEEEE----ECC----CC-----cHHHHHHHHHHHHhhCCCCeEEEe
Confidence 3467777888875 554443 222 12 223577899999999999888863
No 65
>PRK12928 lipoyl synthase; Provisional
Probab=77.15 E-value=17 Score=35.11 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=78.9
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcc
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHc 230 (327)
+.++.+ +++++++++.++|++-|.|=++.-+++.| + +..-+.+.|+.||+.+|++-|= + |.+ .+.
T Consensus 85 ~~~~~e-ei~~~a~~~~~~G~keivitg~~~dDl~d--~-----g~~~~~ell~~Ik~~~p~~~I~--~-ltp----~~~ 149 (290)
T PRK12928 85 MPLDPD-EPERVAEAVAALGLRYVVLTSVARDDLPD--G-----GAAHFVATIAAIRARNPGTGIE--V-LTP----DFW 149 (290)
T ss_pred CCCCHH-HHHHHHHHHHHCCCCEEEEEEEeCCcccc--c-----CHHHHHHHHHHHHhcCCCCEEE--E-ecc----ccc
Confidence 456776 69999999999999999987752111111 0 0124788999999999987552 2 222 111
Q ss_pred e----ee---cCCC-cccc------HH---------HHHHHHHHHHHHHHcCCCeecCCCCCCch------HHHHHHHHH
Q 020319 231 G----IV---REDG-VIMN------DE---------TVHQLCKQAVSQARAGADVVSPSDMMDGR------VGAIRAALD 281 (327)
Q Consensus 231 G----Il---~~~G-~IdN------D~---------Tv~~Lak~Als~A~AGADiVAPSDMMDGR------V~aIR~aLD 281 (327)
| .+ .+.| .|.| |. |.++..+.--...++|-++.-=|+||=|- +...=+.|.
T Consensus 150 ~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lr 229 (290)
T PRK12928 150 GGQRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLR 229 (290)
T ss_pred cCCHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHH
Confidence 1 00 0111 2222 22 33333333334456788899999999985 222334567
Q ss_pred HCCCCCceeeehhh
Q 020319 282 AEGFQHVSIMSYTA 295 (327)
Q Consensus 282 ~~Gf~~v~IMSYSA 295 (327)
+.|+..+.|..|..
T Consensus 230 el~~d~v~i~~Yl~ 243 (290)
T PRK12928 230 AVGCDRLTIGQYLR 243 (290)
T ss_pred hcCCCEEEEEcCCC
Confidence 78999999999976
No 66
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=76.65 E-value=12 Score=39.76 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecC
Q 020319 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 156 d~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
|+-+.+.++.+.+.|+..|-+|--+.+ . --+.++|+..|+.- +.|. +|+ .||..-
T Consensus 95 d~vv~~~v~~A~~~Gvd~irif~~lnd-~------------~n~~~~i~~ak~~G--~~v~--~~i-~~t~~p------- 149 (592)
T PRK09282 95 DDVVEKFVEKAAENGIDIFRIFDALND-V------------RNMEVAIKAAKKAG--AHVQ--GTI-SYTTSP------- 149 (592)
T ss_pred chhhHHHHHHHHHCCCCEEEEEEecCh-H------------HHHHHHHHHHHHcC--CEEE--EEE-EeccCC-------
Confidence 334667888999999999999864332 1 23577888888763 3333 344 244310
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHH
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAAL 280 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG--------RV~aIR~aL 280 (327)
. -|++.+.+.+-...++|||+|+-.||.=+ .|.+||+.+
T Consensus 150 ---~---~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 150 ---V---HTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV 196 (592)
T ss_pred ---C---CCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC
Confidence 1 26778888888889999999999999863 466777765
No 67
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=76.38 E-value=27 Score=31.39 Aligned_cols=80 Identities=26% Similarity=0.416 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
.+.+.++.+.+.|+.+|++= + .-+++.+|+.+|++-|++|+.+
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~----~-----------------~g~~~~~k~~~~~~~i~~~~~~---------------- 45 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVS----N-----------------PGLLELLKELGPDLKIIADYSL---------------- 45 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEc----C-----------------HHHHHHHHHhCCCCcEEEecCc----------------
Confidence 57788899999999997762 1 1278999999999999999876
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
.|-|..|+..+.+ -||+-|..|-=+ ....|++.....
T Consensus 46 nv~N~~s~~~~~~-------~G~~~i~ls~EL--~~~ei~~i~~~~ 82 (233)
T PF01136_consen 46 NVFNSESARFLKE-------LGASRITLSPEL--SLEEIKEIAENS 82 (233)
T ss_pred cCCCHHHHHHHHH-------cCCCEEEECccC--CHHHHHHHHHhC
Confidence 4678888886655 488866655544 556666655555
No 68
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=75.61 E-value=15 Score=39.24 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
-+.+.++.+.+.|+..|-+|--+ |+---+..+|+..|+..- .+..-+| ||...
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~l-------------nd~~~~~~ai~~ak~~G~--~~~~~i~---yt~~p--------- 150 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAM-------------NDPRNLETALKAVRKVGA--HAQGTLS---YTTSP--------- 150 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeC-------------CcHHHHHHHHHHHHHcCC--eEEEEEE---EeeCC---------
Confidence 46677889999999999999422 211246678888888642 2222222 44321
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHH
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAAL 280 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG--------RV~aIR~aL 280 (327)
.+ |++.+.+.+-...++|||+|+-.||.=+ .|.+||+.+
T Consensus 151 -~~---~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 151 -VH---TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV 197 (593)
T ss_pred -cc---CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc
Confidence 12 4666777777777899999999999753 567778775
No 69
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=75.31 E-value=25 Score=32.57 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=64.3
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcce
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcG 231 (327)
+-++ .+.+.++.+++.|++.|.++|... +-..=..-=-.+.++...+... ++-|++=|
T Consensus 15 iD~~-~~~~~i~~l~~~Gv~gi~~~GstG--------E~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv------------ 73 (281)
T cd00408 15 VDLD-ALRRLVEFLIEAGVDGLVVLGTTG--------EAPTLTDEERKEVIEAVVEAVAGRVPVIAGV------------ 73 (281)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECCCCc--------ccccCCHHHHHHHHHHHHHHhCCCCeEEEec------------
Confidence 3454 588899999999999999999632 2221111222344444444433 45555422
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cC-----CCCCCchHHHHHHHHHHCCCCCceeeehhh
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SP-----SDMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiV---AP-----SDMMDGRV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
|.. +.+...++|-...++|||.| .| |+ +|-+...++..+. .+++||=|-.
T Consensus 74 -----~~~----~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~--~~~~~~~~~ia~~---~~~pi~iYn~ 131 (281)
T cd00408 74 -----GAN----STREAIELARHAEEAGADGVLVVPPYYNKPSQ--EGIVAHFKAVADA---SDLPVILYNI 131 (281)
T ss_pred -----CCc----cHHHHHHHHHHHHHcCCCEEEECCCcCCCCCH--HHHHHHHHHHHhc---CCCCEEEEEC
Confidence 111 12233446666688899954 22 33 6777788877765 5789988854
No 70
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=75.19 E-value=7.6 Score=36.30 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=55.8
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
|...|++.+ .+.+.++++.++|+..|-| +|..|. ..|+ -+.+-++.||+++|++ |+. ..-|
T Consensus 135 ~~~~~~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~~----~i~---l~~H 195 (268)
T cd07940 135 EDATRTDLD-FLIEVVEAAIEAGATTINI--------PDTVGY--LTPE-EFGELIKKLKENVPNI----KVP---ISVH 195 (268)
T ss_pred ecCCCCCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCC--CCHH-HHHHHHHHHHHhCCCC----cee---EEEE
Confidence 344456664 6888888999999887544 455555 2333 3566889999999873 332 3568
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
+|+-. | -+ ..-++.-.++||++|--|-.
T Consensus 196 ~Hn~~----G----lA-----~An~laAi~aG~~~iD~s~~ 223 (268)
T cd07940 196 CHNDL----G----LA-----VANSLAAVEAGARQVECTIN 223 (268)
T ss_pred ecCCc----c----hH-----HHHHHHHHHhCCCEEEEEee
Confidence 88643 2 01 11344556789999855533
No 71
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=74.81 E-value=8 Score=43.47 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecC
Q 020319 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 156 d~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
|+-+-+.++++.+.||.-+-+|--+ |.=.-+.-||.+++++- =++.+|+| ||.+ |++.
T Consensus 629 DnVi~~Fvkqaa~~GIDvFRiFDsL-------------Nwv~~M~vaidAV~e~g----kv~EatiC-YTGD----ildp 686 (1149)
T COG1038 629 DNVIREFVKQAAKSGIDVFRIFDSL-------------NWVEQMRVAIDAVREAG----KVAEATIC-YTGD----ILDP 686 (1149)
T ss_pred hHHHHHHHHHHHhcCccEEEeehhh-------------cchhhhhhHHHHHHhcC----CeEEEEEE-eccc----cCCC
Confidence 3346678889999999988888532 21122455888888773 45666666 7654 4532
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD 281 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD 281 (327)
++- -=||+.+.+.|-..-++||||+|--||-- =-|+++|+..|
T Consensus 687 -~r~--kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~d 737 (1149)
T COG1038 687 -GRK--KYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVD 737 (1149)
T ss_pred -Ccc--cccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhcC
Confidence 211 12899999999999999999999999853 23677777654
No 72
>PLN02877 alpha-amylase/limit dextrinase
Probab=74.23 E-value=68 Score=36.59 Aligned_cols=153 Identities=22% Similarity=0.284 Sum_probs=86.0
Q ss_pred CceeeEEEeeCCC-Cccc-CCCCCceEecch---hhHHHHHHHHHHcCCCeEEEeecC-----CCCC-------------
Q 020319 128 NFVYPLFIHEGEE-DTPI-GAMPGCYRLGWR---HGLVQEVAKARDVGVNSVVLFPKV-----PDAL------------- 184 (327)
Q Consensus 128 dLI~PlFV~eg~~-~~~I-~SMPGv~r~sid---~~l~~ev~~~~~lGI~sVlLFgvi-----~~~~------------- 184 (327)
-.||=+=|.+=.. +..+ ....|-|. ++- ...++.+++|.++||++|-|-|+- ++..
T Consensus 340 ~VIYElHVRDFS~~d~sv~~~~RGtyl-gftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~ 418 (970)
T PLN02877 340 ISIYELHVRDFSANDETVHPDFRGGYL-AFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEK 418 (970)
T ss_pred cEEEEEeccccccCCCCCCcCCCCcch-hhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhcc
Confidence 3566666664331 2111 23456554 221 125778999999999999997752 2100
Q ss_pred -----------------CC-------------cccccCcCCCCcH-----HHHHHHHHHHCCCeeEEeeecccCCCCCCc
Q 020319 185 -----------------KS-------------PTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (327)
Q Consensus 185 -----------------KD-------------~~Gs~A~n~~glV-----~rAIr~iK~~fPdl~VitDVcLc~YTshGH 229 (327)
.| +.|+.+.||+|+. .+.|+.+.++ .|-||-||-.-.....|.
T Consensus 419 ~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~--GI~VImDVVyNHt~~~g~ 496 (970)
T PLN02877 419 LPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRI--GLRVVLDVVYNHLHSSGP 496 (970)
T ss_pred ccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHC--CCEEEEEECCccccCCCC
Confidence 01 4567777788863 2233333222 599999998876655444
Q ss_pred ce---ee-----------cCCCcccc-----------HHHHHHHHHHHHHHH-HcCCC---eecCCCCCCchHHHHHHHH
Q 020319 230 DG---IV-----------REDGVIMN-----------DETVHQLCKQAVSQA-RAGAD---VVSPSDMMDGRVGAIRAAL 280 (327)
Q Consensus 230 cG---Il-----------~~~G~IdN-----------D~Tv~~Lak~Als~A-~AGAD---iVAPSDMMDGRV~aIR~aL 280 (327)
.+ .+ +.+|.+.| ...-+.+.....-.+ +-|.| .=.-..+++..+..||++|
T Consensus 497 ~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L 576 (970)
T PLN02877 497 FDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDAL 576 (970)
T ss_pred cchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHH
Confidence 22 12 12343332 122233444444445 35655 3455666778889999999
Q ss_pred HHC
Q 020319 281 DAE 283 (327)
Q Consensus 281 D~~ 283 (327)
++-
T Consensus 577 ~~i 579 (970)
T PLN02877 577 QSL 579 (970)
T ss_pred HHH
Confidence 885
No 73
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=74.19 E-value=4.9 Score=34.93 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceeee
Q 020319 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 241 ND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~IMS 292 (327)
.|.|.+.+++.|..+ +||+|+=|.||-... ..+.+.|.++|+.++.||-
T Consensus 35 ~~v~~e~~v~aa~~~---~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv 86 (128)
T cd02072 35 VLSPQEEFIDAAIET---DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV 86 (128)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE
Confidence 678889999888755 999999999998775 5566788899998887774
No 74
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=73.77 E-value=5.1 Score=34.42 Aligned_cols=48 Identities=31% Similarity=0.421 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCCCCch---HHHHHHHHHHCCCCCceeee
Q 020319 242 DETVHQLCKQAVSQARAGADVVSPSDMMDGR---VGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 242 D~Tv~~Lak~Als~A~AGADiVAPSDMMDGR---V~aIR~aLD~~Gf~~v~IMS 292 (327)
|.|.+..++.|+ +.+||+|.=|.+|... +..+.++|.+.|..++.||.
T Consensus 39 ~~s~e~~v~aa~---e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 39 FQTPEEIARQAV---EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred CCCHHHHHHHHH---HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 567777777776 6699999999999865 45667788899988887875
No 75
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=73.38 E-value=7.2 Score=37.47 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccccCcCCCC---cHHHHHHHHHHHCCCeeEEeeec---ccCCCCCCccee
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~-~KD~~Gs~A~n~~g---lV~rAIr~iK~~fPdl~VitDVc---Lc~YTshGHcGI 232 (327)
.+.++.+++.|+..|-+|--+.+. .+...+ .+.+- -+.++|+..|+.- +.|..-+| -|||
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~-------- 148 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPY-------- 148 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCC--------
Confidence 567788999999999998543321 121222 11111 2445666666653 44544444 3444
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
+|.. +.+.+.+.+-...++|||.|.=.|+.= -.|.++|+.+
T Consensus 149 ---~~~~----~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 149 ---EGEV----PPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred ---CCCC----CHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhC
Confidence 2333 355666666667789999999988864 2456666654
No 76
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=72.76 E-value=17 Score=37.67 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
+...++.+++.|+..|-+|--+.+ . --+.++|+..|+.- +.|. .|+| ||..-
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd-~------------~n~~~~i~~ak~~G--~~v~--~~i~-~t~~p---------- 148 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALND-I------------RNLEKSIEVAKKHG--AHVQ--GAIS-YTVSP---------- 148 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCH-H------------HHHHHHHHHHHHCC--CEEE--EEEE-eccCC----------
Confidence 444588999999999999964332 1 12677888888764 3333 3342 33210
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
.. |++.+.+.|-...++|||.|+=.||.= =.|.+||+.+
T Consensus 149 ~~---t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~ 195 (467)
T PRK14041 149 VH---TLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF 195 (467)
T ss_pred CC---CHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc
Confidence 11 477777777788899999999999974 3567777765
No 77
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=72.59 E-value=11 Score=43.04 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecC
Q 020319 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 156 d~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
|+-+-+.++.+.+.||.-+-+|-- +|+=-=+..+|+++|+. ...+-.||| ||.+ +++.
T Consensus 624 d~vv~~f~~~~~~~GidifrifD~-------------lN~~~n~~~~~~~~~~~----g~~~~~~i~-yt~~----~~d~ 681 (1143)
T TIGR01235 624 DNVVKYFVKQAAQGGIDIFRVFDS-------------LNWVENMRVGMDAVAEA----GKVVEAAIC-YTGD----ILDP 681 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcc-------------CcCHHHHHHHHHHHHHc----CCEEEEEEE-Eecc----CCCc
Confidence 544566677899999998888852 33334467788988875 235556666 7642 3332
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
...+. |++.+.+.|-...++|||+|+=.||.= -.|.+||+.+
T Consensus 682 ~~~~~---~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~ 731 (1143)
T TIGR01235 682 ARPKY---DLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT 731 (1143)
T ss_pred CCCCC---CHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc
Confidence 22233 466666666677889999999999974 3567777765
No 78
>PLN02428 lipoic acid synthase
Probab=72.56 E-value=27 Score=35.14 Aligned_cols=180 Identities=20% Similarity=0.260 Sum_probs=99.5
Q ss_pred CChhhHhhhccCCCCCC------------------CceeeEEEeeCCC---C---cccCCCCCceEecchhhHHHHHHHH
Q 020319 111 KSPAMRASFQETNLSPA------------------NFVYPLFIHEGEE---D---TPIGAMPGCYRLGWRHGLVQEVAKA 166 (327)
Q Consensus 111 ~~~~lR~l~~Et~Ls~~------------------dLI~PlFV~eg~~---~---~~I~SMPGv~r~sid~~l~~ev~~~ 166 (327)
....+|+++++..|+.= ...---|+.-|.. . =.++...|-++...+ ++.+.++.+
T Consensus 64 ~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~CrFCav~~~~~p~~~d~~-Ep~~vA~~v 142 (349)
T PLN02428 64 KYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPD-EPENVAEAI 142 (349)
T ss_pred hHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCCCCcCCCCCCCCCCChh-hHHHHHHHH
Confidence 34567888998888641 1223344443431 1 134444444565554 578888899
Q ss_pred HHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe---ee-----cccCCCCCCcceeecCCCc
Q 020319 167 RDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT---DV-----ALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 167 ~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit---DV-----cLc~YTshGHcGIl~~~G~ 238 (327)
.++|++.|+|-++--+.+.| ..-.-+.+.|+.||+..|++.|-+ |. .|.-.-..|-+.+-
T Consensus 143 ~~~Glk~vvltSg~rddl~D-------~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~----- 210 (349)
T PLN02428 143 ASWGVDYVVLTSVDRDDLPD-------GGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFA----- 210 (349)
T ss_pred HHcCCCEEEEEEcCCCCCCc-------ccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEc-----
Confidence 99999998887752222333 112357889999999999875544 11 11111122322211
Q ss_pred cccHHHHHHHHH-------------HHHHHHH-cCCCeecCCCCCCc------hHHHHHHHHHHCCCCCceeeeh---hh
Q 020319 239 IMNDETVHQLCK-------------QAVSQAR-AGADVVSPSDMMDG------RVGAIRAALDAEGFQHVSIMSY---TA 295 (327)
Q Consensus 239 IdND~Tv~~Lak-------------~Als~A~-AGADiVAPSDMMDG------RV~aIR~aLD~~Gf~~v~IMSY---SA 295 (327)
-|-||+++|-+ ..+..|+ +.-.+..=|.||=| -+..+-+.|.+.|+..+.|=-| +-
T Consensus 211 -hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~ 289 (349)
T PLN02428 211 -HNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTK 289 (349)
T ss_pred -cCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCc
Confidence 12333333222 2222332 34477777888877 3444455577788877776666 44
Q ss_pred hhhc--cccch
Q 020319 296 KYAS--SFYGP 304 (327)
Q Consensus 296 KyAS--sfYGP 304 (327)
+..+ .|+-|
T Consensus 290 ~h~~v~~~v~p 300 (349)
T PLN02428 290 RHLPVKEYVTP 300 (349)
T ss_pred ceeeeecccCH
Confidence 4443 56666
No 79
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=72.39 E-value=17 Score=33.51 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=26.5
Q ss_pred ccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc
Q 020319 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221 (327)
Q Consensus 188 ~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL 221 (327)
.|.+-+-..|+ +.|+.||+.||+.-|++|.-+
T Consensus 34 vG~~l~~~~G~--~~i~~lk~~~~~~~v~~DLK~ 65 (216)
T PRK13306 34 VGTILLLAEGM--KAVRVLRALYPDKIIVADTKI 65 (216)
T ss_pred EChHHHHHhCH--HHHHHHHHHCCCCEEEEEEee
Confidence 56666666674 789999999999999999876
No 80
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=72.24 E-value=48 Score=30.87 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
+.++.++.+++.||+.+-+ + ++..+ ..++|+.++++||++.|.+ |
T Consensus 21 ~a~~~~~al~~~Gi~~iEi----t-----------~~t~~-a~~~i~~l~~~~~~~~vGA-------------------G 65 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEV----T-----------LRTPV-ALDAIRLLRKEVPDALIGA-------------------G 65 (204)
T ss_pred HHHHHHHHHHHcCCCEEEE----e-----------CCCcc-HHHHHHHHHHHCCCCEEEE-------------------E
Confidence 5888999999999998655 1 11112 3458999999999988876 6
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchH-----------------HHHHHHHHHCCCCCceeee---hh-h
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRV-----------------GAIRAALDAEGFQHVSIMS---YT-A 295 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADi-VAPSDMMDGRV-----------------~aIR~aLD~~Gf~~v~IMS---YS-A 295 (327)
.|.+-++++ ...+|||+. |+|. +-+.-+ ..|.+++ +.|+.-|=+.. +. .
T Consensus 66 TVl~~~~a~-------~a~~aGA~FivsP~-~~~~v~~~~~~~~i~~iPG~~TptEi~~A~-~~Ga~~vKlFPA~~~GG~ 136 (204)
T TIGR01182 66 TVLNPEQLR-------QAVDAGAQFIVSPG-LTPELAKHAQDHGIPIIPGVATPSEIMLAL-ELGITALKLFPAEVSGGV 136 (204)
T ss_pred eCCCHHHHH-------HHHHcCCCEEECCC-CCHHHHHHHHHcCCcEECCCCCHHHHHHHH-HCCCCEEEECCchhcCCH
Confidence 777666544 445788885 4554 333222 2334444 46665544433 33 5
Q ss_pred hhhccccchhH
Q 020319 296 KYASSFYGPFR 306 (327)
Q Consensus 296 KyASsfYGPFR 306 (327)
+|-.++-|||-
T Consensus 137 ~yikal~~plp 147 (204)
T TIGR01182 137 KMLKALAGPFP 147 (204)
T ss_pred HHHHHHhccCC
Confidence 67777777774
No 81
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.64 E-value=3.1 Score=37.49 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=51.8
Q ss_pred ceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCc
Q 020319 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (327)
Q Consensus 150 v~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGH 229 (327)
..|++.+ .+.+.++.+.++|+..|.| +|..|. ..|+ -+.+-|+.+|+++|++ +..-|+|
T Consensus 131 ~~~~~~~-~~~~~~~~~~~~g~~~i~l--------~Dt~G~--~~P~-~v~~lv~~~~~~~~~~---------~l~~H~H 189 (237)
T PF00682_consen 131 ASRTDPE-ELLELAEALAEAGADIIYL--------ADTVGI--MTPE-DVAELVRALREALPDI---------PLGFHAH 189 (237)
T ss_dssp TGGSSHH-HHHHHHHHHHHHT-SEEEE--------EETTS---S-HH-HHHHHHHHHHHHSTTS---------EEEEEEB
T ss_pred cccccHH-HHHHHHHHHHHcCCeEEEe--------eCccCC--cCHH-HHHHHHHHHHHhccCC---------eEEEEec
Confidence 3466664 6899999999999988765 222332 2232 2678999999999982 2334888
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 020319 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 230 cGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAP 265 (327)
+- -|- -...++.-.+||||+|--
T Consensus 190 nd----~Gl---------a~An~laA~~aGa~~id~ 212 (237)
T PF00682_consen 190 ND----LGL---------AVANALAALEAGADRIDG 212 (237)
T ss_dssp BT----TS----------HHHHHHHHHHTT-SEEEE
T ss_pred CC----ccc---------hhHHHHHHHHcCCCEEEc
Confidence 62 231 123477778999999743
No 82
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.56 E-value=33 Score=31.85 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
++++.++-+++.||+.|=+ + ++..+ ..++|+.++++||+++|-+ |
T Consensus 17 ~a~~ia~al~~gGi~~iEi----t-----------~~tp~-a~~~I~~l~~~~~~~~vGA-------------------G 61 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEI----T-----------LRTPA-ALDAIRAVAAEVEEAIVGA-------------------G 61 (201)
T ss_pred HHHHHHHHHHHCCCCEEEE----e-----------CCCcc-HHHHHHHHHHHCCCCEEee-------------------E
Confidence 5888899999999998765 1 11112 3468999999999987765 7
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchH-----------------HHHHHHHHHCCCCCceeee---h-hh
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRV-----------------GAIRAALDAEGFQHVSIMS---Y-TA 295 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADi-VAPSDMMDGRV-----------------~aIR~aLD~~Gf~~v~IMS---Y-SA 295 (327)
.|.|-++++ ...+|||+. |+|. +-+.-+ ..|-+++ +.|+.-|=|.. + ..
T Consensus 62 TVl~~e~a~-------~ai~aGA~FivSP~-~~~~vi~~a~~~~i~~iPG~~TptEi~~A~-~~Ga~~vK~FPa~~~GG~ 132 (201)
T PRK06015 62 TILNAKQFE-------DAAKAGSRFIVSPG-TTQELLAAANDSDVPLLPGAATPSEVMALR-EEGYTVLKFFPAEQAGGA 132 (201)
T ss_pred eCcCHHHHH-------HHHHcCCCEEECCC-CCHHHHHHHHHcCCCEeCCCCCHHHHHHHH-HCCCCEEEECCchhhCCH
Confidence 777776555 456789995 4554 333222 3344455 56776555543 3 24
Q ss_pred hhhccccchhH
Q 020319 296 KYASSFYGPFR 306 (327)
Q Consensus 296 KyASsfYGPFR 306 (327)
+|-.++=|||.
T Consensus 133 ~yikal~~plp 143 (201)
T PRK06015 133 AFLKALSSPLA 143 (201)
T ss_pred HHHHHHHhhCC
Confidence 66666666765
No 83
>smart00642 Aamy Alpha-amylase domain.
Probab=71.11 E-value=24 Score=31.19 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=44.4
Q ss_pred chhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCC------------CcHHHHHHHHHHHCCCeeEEeeeccc
Q 020319 155 WRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN------------GLVPRTIWLLKDRYPDLVIYTDVALD 222 (327)
Q Consensus 155 id~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~------------glV~rAIr~iK~~fPdl~VitDVcLc 222 (327)
+. ++.+++..+.++|+++|-|=|+.+. .....+...|++- .=+.+.|++++++ .|-||.|+-+.
T Consensus 18 ~~-gi~~~l~yl~~lG~~~I~l~Pi~~~-~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~--Gi~vilD~V~N 93 (166)
T smart00642 18 LQ-GIIEKLDYLKDLGVTAIWLSPIFES-PQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHAR--GIKVILDVVIN 93 (166)
T ss_pred HH-HHHHHHHHHHHCCCCEEEECcceeC-CCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 54 6888999999999999999885322 1110112222222 2256666666665 79999999987
Q ss_pred CCCC
Q 020319 223 PYSS 226 (327)
Q Consensus 223 ~YTs 226 (327)
....
T Consensus 94 H~~~ 97 (166)
T smart00642 94 HTSD 97 (166)
T ss_pred CCCC
Confidence 6555
No 84
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=70.89 E-value=21 Score=32.94 Aligned_cols=105 Identities=28% Similarity=0.502 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
++++.++.+++-||+.+=+ + ..++ + ..++|+.++++||+++|-+ |
T Consensus 21 ~a~~~~~al~~gGi~~iEi----T--~~t~--------~--a~~~I~~l~~~~p~~~vGA-------------------G 65 (196)
T PF01081_consen 21 DAVPIAEALIEGGIRAIEI----T--LRTP--------N--ALEAIEALRKEFPDLLVGA-------------------G 65 (196)
T ss_dssp GHHHHHHHHHHTT--EEEE----E--TTST--------T--HHHHHHHHHHHHTTSEEEE-------------------E
T ss_pred HHHHHHHHHHHCCCCEEEE----e--cCCc--------c--HHHHHHHHHHHCCCCeeEE-------------------E
Confidence 5888999999999998655 1 1111 1 2468999999999998876 6
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchH------------------HHHHHHHHHCCCCCceeee---hh-
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRV------------------GAIRAALDAEGFQHVSIMS---YT- 294 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADi-VAPSDMMDGRV------------------~aIR~aLD~~Gf~~v~IMS---YS- 294 (327)
.|.|-+.++ ...+|||+. |+|. +|=.| ..|-+++ +.|++-|=+.. +.
T Consensus 66 TV~~~e~a~-------~a~~aGA~FivSP~--~~~~v~~~~~~~~i~~iPG~~TptEi~~A~-~~G~~~vK~FPA~~~GG 135 (196)
T PF01081_consen 66 TVLTAEQAE-------AAIAAGAQFIVSPG--FDPEVIEYAREYGIPYIPGVMTPTEIMQAL-EAGADIVKLFPAGALGG 135 (196)
T ss_dssp S--SHHHHH-------HHHHHT-SEEEESS----HHHHHHHHHHTSEEEEEESSHHHHHHHH-HTT-SEEEETTTTTTTH
T ss_pred eccCHHHHH-------HHHHcCCCEEECCC--CCHHHHHHHHHcCCcccCCcCCHHHHHHHH-HCCCCEEEEecchhcCc
Confidence 777766544 556899995 6774 44322 3344455 56775444432 23
Q ss_pred hhhhccccchhHH
Q 020319 295 AKYASSFYGPFRE 307 (327)
Q Consensus 295 AKyASsfYGPFRd 307 (327)
.+|--++-|||-+
T Consensus 136 ~~~ik~l~~p~p~ 148 (196)
T PF01081_consen 136 PSYIKALRGPFPD 148 (196)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHhccCCC
Confidence 5677777777754
No 85
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=70.45 E-value=55 Score=32.14 Aligned_cols=98 Identities=9% Similarity=0.031 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCCeEEEe-ec----------CCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 159 LVQEVAKARDVGVNSVVLF-PK----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLF-gv----------i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
..+-++.+.+.|...|-|- +. ..+.-.|+.|-.--|.-=++.+.|++||++.++=.|..=+..++|...
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 4555567888999999884 32 234456777766667778888999999999864246666665555211
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
+ ..+.|.+...+.+-.+.++|+|+|.-|.
T Consensus 234 ---------~--~~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 234 ---------M--GDSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred ---------C--CCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 1 1233445555566677889999998754
No 86
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=70.36 E-value=53 Score=30.21 Aligned_cols=113 Identities=22% Similarity=0.319 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCC-eeEE-----eeecccCCCCCCcce
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIY-----TDVALDPYSSDGHDG 231 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPd-l~Vi-----tDVcLc~YTshGHcG 231 (327)
.+++.++.+++-||+.+=+ . .|++.+ .++|+.|+++||+ ++|- +.=-++..-..|=++
T Consensus 23 ~~~~~~~a~~~gGi~~iEv----t--~~~~~~----------~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~f 86 (206)
T PRK09140 23 EALAHVGALIEAGFRAIEI----P--LNSPDP----------FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRL 86 (206)
T ss_pred HHHHHHHHHHHCCCCEEEE----e--CCCccH----------HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCE
Confidence 6899999999999997654 2 244422 2399999999995 6633 333334445667777
Q ss_pred eecCCCccccHHHHHHHH-------------HHHHHHHHcCCCeec--CCCCCCchHHHHHHHHHHCCCCCceeee
Q 020319 232 IVREDGVIMNDETVHQLC-------------KQAVSQARAGADVVS--PSDMMDGRVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~La-------------k~Als~A~AGADiVA--PSDMMDGRV~aIR~aLD~~Gf~~v~IMS 292 (327)
++.. . .|.+-++... .++..-.++|||+|. |++.+ | +..|++...-.. .++++|+
T Consensus 87 ivsp--~-~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~-G-~~~l~~l~~~~~-~~ipvva 156 (206)
T PRK09140 87 IVTP--N-TDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQL-G-PAGIKALRAVLP-PDVPVFA 156 (206)
T ss_pred EECC--C-CCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCC-C-HHHHHHHHhhcC-CCCeEEE
Confidence 7742 1 2222222221 245556679999985 66654 4 555655442221 1455554
No 87
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=70.32 E-value=6.6 Score=36.55 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCCCceeeehhhh
Q 020319 249 CKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 249 ak~Als~A~AGADiVAPS-----DM-MDG--RV~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
..||+.-|+||||.|||= |. -|| .|..|++.++.+|+ ++-||+=|-|
T Consensus 112 ~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~-~tkIlaAS~r 166 (213)
T TIGR00875 112 AAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAP-DTEVIAASVR 166 (213)
T ss_pred HHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCC-CCEEEEeccC
Confidence 569999999999999992 11 243 36788899988988 6778876544
No 88
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=69.95 E-value=39 Score=31.84 Aligned_cols=107 Identities=13% Similarity=0.211 Sum_probs=63.3
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCCcce
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshGHcG 231 (327)
+.++ .+.+.++.+++.|++.+.+.|.. |+..+=..---.+.++...+.. .++-|++=|
T Consensus 16 iD~~-~~~~~i~~l~~~Gv~Gi~~~Gst--------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv------------ 74 (285)
T TIGR00674 16 VDFA-ALEKLIDFQIENGTDAIVVVGTT--------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT------------ 74 (285)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeC------------
Confidence 3454 58888999999999999998852 3222211122233444444332 235455422
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCCCceeeehh
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVA--------PSDMMDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
...+.+...++|-..+++|||.|. ||+ |+-+...++..|.. +++||=|=
T Consensus 75 ---------~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~--~~i~~~~~~i~~~~---~~pi~lYn 131 (285)
T TIGR00674 75 ---------GSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQ--EGLYQHFKAIAEEV---DLPIILYN 131 (285)
T ss_pred ---------CCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCH--HHHHHHHHHHHhcC---CCCEEEEE
Confidence 112234444567777889999442 343 67777777777764 57888884
No 89
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=69.88 E-value=10 Score=37.56 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=40.0
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCe
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDL 213 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl 213 (327)
+.++.+ +++++++.+.+.|++.|.|.+=-++.. .+-.-+.++|+.||+.||++
T Consensus 102 ~~ls~e-EI~~~a~~~~~~Gv~~i~lvgGe~p~~---------~~~e~l~~~i~~Ik~~~p~i 154 (371)
T PRK09240 102 KTLDEE-EIEREMAAIKKLGFEHILLLTGEHEAK---------VGVDYIRRALPIAREYFSSV 154 (371)
T ss_pred ccCCHH-HHHHHHHHHHhCCCCEEEEeeCCCCCC---------CCHHHHHHHHHHHHHhCCCc
Confidence 677886 799999999999999997764212211 22256888999999999875
No 90
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=69.23 E-value=11 Score=36.22 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=54.1
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcce
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcG 231 (327)
|.+.+ .+++.++++.++|+..|-| +|..|.. +|. -+.+-++.+|+++|++ +..-|+|+-
T Consensus 143 r~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~~--~P~-~v~~l~~~l~~~~~~~---------~i~~H~Hnd 201 (280)
T cd07945 143 RDSPD-YVFQLVDFLSDLPIKRIML--------PDTLGIL--SPF-ETYTYISDMVKRYPNL---------HFDFHAHND 201 (280)
T ss_pred cCCHH-HHHHHHHHHHHcCCCEEEe--------cCCCCCC--CHH-HHHHHHHHHHhhCCCC---------eEEEEeCCC
Confidence 66665 6888999999999987554 3444432 222 3778899999999874 345588864
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
. | .=..-++.-.+||||+|--|
T Consensus 202 ~----G---------la~AN~laA~~aGa~~vd~s 223 (280)
T cd07945 202 Y----D---------LAVANVLAAVKAGIKGLHTT 223 (280)
T ss_pred C----C---------HHHHHHHHHHHhCCCEEEEe
Confidence 3 2 11123556679999988644
No 91
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=68.83 E-value=18 Score=36.48 Aligned_cols=67 Identities=27% Similarity=0.390 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
+-.+.++.|++.|+.-+.|= .. .|. .--+...|+.||++||++.||+ |
T Consensus 108 ~~~er~~~L~~agvD~ivID----~a----~g~-----s~~~~~~ik~ik~~~~~~~via-------------------G 155 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVID----SA----HGH-----SEHVIDMIKKIKKKFPDVPVIA-------------------G 155 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-----S----STT-----SHHHHHHHHHHHHHSTTSEEEE-------------------E
T ss_pred HHHHHHHHHHHcCCCEEEcc----cc----Ccc-----HHHHHHHHHHHHHhCCCceEEe-------------------c
Confidence 46888889999999766542 11 122 2346679999999999998887 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
-|- |- ++|..+.+||||.|
T Consensus 156 NV~---T~----e~a~~L~~aGad~v 174 (352)
T PF00478_consen 156 NVV---TY----EGAKDLIDAGADAV 174 (352)
T ss_dssp EE----SH----HHHHHHHHTT-SEE
T ss_pred ccC---CH----HHHHHHHHcCCCEE
Confidence 222 22 36777889999986
No 92
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.82 E-value=41 Score=31.47 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=56.3
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCCcc
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshGHc 230 (327)
+.|+...+.+.++++.++|..+|-||..-|...++..-+ --..+.++...+++ ..+..+ +..+||. -
T Consensus 6 h~s~~g~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~------~~~~~~~~~~~~~~~~~~~~i--~~Hapy~----i 73 (274)
T TIGR00587 6 HVSAAGGLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLE------EEVIDWFKAALETNKNLSQIV--LVHAPYL----I 73 (274)
T ss_pred EEeccCCHHHHHHHHHHhCCCEEEEEecCccccCCCCCC------HHHHHHHHHHHHHcCCCCcce--eccCCee----e
Confidence 345555689999999999999999998744332221111 11233444333332 221111 2334554 1
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCee--cCCCC
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVV--SPSDM 268 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGADiV--APSDM 268 (327)
.+...|.. .-+.|++.+.+..-.-++-||+.| -|...
T Consensus 74 Nlas~~~~-~r~~sv~~~~~~i~~A~~lga~~vv~H~G~~ 112 (274)
T TIGR00587 74 NLASPDEE-KEEKSLDVLDEELKRCELLGIMLYNFHPGSA 112 (274)
T ss_pred ecCCCCHH-HHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 11111111 224788888887777778899844 35443
No 93
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=68.46 E-value=25 Score=33.32 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcceeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHcGIl~~~ 236 (327)
.|...+..+.++||+.|++..=-++..-|.....-++-+ -...-|+.|++.+.+ ..+. |+..| .||...-
T Consensus 86 ~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~-~~~~Li~~i~~~~~~~~~i~--va~~P---~~hp~~~--- 156 (287)
T PF02219_consen 86 ALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFD-YALDLIRLIRQEYGDDFSIG--VAGYP---EGHPEAP--- 156 (287)
T ss_dssp HHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-S-SHHHHHHHHHHHHGGGSEEE--EEE-T---THHTTCS---
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhH-HHHHHHHHHHHhcCcccccc--cccCC---CCCcccc---
Confidence 588888899999999999875312211111111112211 245678888877665 3332 33333 5665111
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceee
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM 291 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IM 291 (327)
+-+.-+++|.+ -.+||||.+=--=.-| ..+....+.+.+.|. +++|+
T Consensus 157 ---~~~~~~~~l~~----Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~-~~pIi 204 (287)
T PF02219_consen 157 ---DFEAELKRLKK----KIDAGADFIITQPFFDAEAFERFLDRLREAGI-DVPII 204 (287)
T ss_dssp ---SHHHHHHHHHH----HHHTTESEEEEEE-SSHHHHHHHHHHHHHTTH-TSEEE
T ss_pred ---CHHHHHHHHHH----HHHCCCCEEeccccCCHHHHHHHHHHHHHcCC-CCcEE
Confidence 12333444433 3589999876666667 566677888888887 44443
No 94
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.38 E-value=12 Score=34.76 Aligned_cols=54 Identities=31% Similarity=0.520 Sum_probs=41.7
Q ss_pred CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 141 ~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+..|..+||++- ..|+..+.+.|..-|.|||. + .-| ...|+.+|..||++-+++
T Consensus 107 ~~~i~~iPG~~T-------~~E~~~A~~~Gad~vklFPa-~-------------~~G--~~~ik~l~~~~p~ip~~a 160 (213)
T PRK06552 107 LYQIPYLPGCMT-------VTEIVTALEAGSEIVKLFPG-S-------------TLG--PSFIKAIKGPLPQVNVMV 160 (213)
T ss_pred HcCCCEECCcCC-------HHHHHHHHHcCCCEEEECCc-c-------------cCC--HHHHHHHhhhCCCCEEEE
Confidence 468999999943 46788889999999999983 1 124 456999999999865544
No 95
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=67.81 E-value=38 Score=29.86 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
..++++++.++|+.-|.+||-.. ...+.+.+ ..-|+.+++.+|+.. |.- +|-
T Consensus 115 ~~~~~~~~~~~g~d~v~~~pg~~--------~~~~~~~~--~~~i~~l~~~~~~~~-----------------i~v-~GG 166 (206)
T TIGR03128 115 KVKRAKELKELGADYIGVHTGLD--------EQAKGQNP--FEDLQTILKLVKEAR-----------------VAV-AGG 166 (206)
T ss_pred hHHHHHHHHHcCCCEEEEcCCcC--------cccCCCCC--HHHHHHHHHhcCCCc-----------------EEE-ECC
Confidence 57888889999999888876321 11222222 457888888887522 211 244
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecC-CCCC
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVSP-SDMM 269 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVAP-SDMM 269 (327)
| |.++++ .+.++|||.|+= |..|
T Consensus 167 I-~~~n~~-------~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 167 I-NLDTIP-------DVIKLGPDIVIVGGAIT 190 (206)
T ss_pred c-CHHHHH-------HHHHcCCCEEEEeehhc
Confidence 5 556655 346899997775 5555
No 96
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=67.48 E-value=11 Score=34.19 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=55.4
Q ss_pred CceE--ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 149 GCYR--LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 149 Gv~r--~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
..++ ++.+ .+.+.++.+.++|+..|-|.. ..|. ..|+. +.+.++.+|+.+|++ ++.-
T Consensus 137 ~~~~~~~~~~-~l~~~~~~~~~~g~~~i~l~D--------t~G~--~~P~~-v~~li~~l~~~~~~~---------~~~~ 195 (265)
T cd03174 137 DAFGCKTDPE-YVLEVAKALEEAGADEISLKD--------TVGL--ATPEE-VAELVKALREALPDV---------PLGL 195 (265)
T ss_pred eecCCCCCHH-HHHHHHHHHHHcCCCEEEech--------hcCC--cCHHH-HHHHHHHHHHhCCCC---------eEEE
Confidence 4455 6665 588888889999988877532 2332 33332 566789999999872 3455
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
|+|+-. |- =..-++.-.+|||++|--|=.
T Consensus 196 H~Hn~~----gl---------a~an~laA~~aG~~~id~s~~ 224 (265)
T cd03174 196 HTHNTL----GL---------AVANSLAALEAGADRVDGSVN 224 (265)
T ss_pred EeCCCC----Ch---------HHHHHHHHHHcCCCEEEeccc
Confidence 888632 21 122456667899999855543
No 97
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=67.10 E-value=28 Score=30.93 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCCeEEE-eec-CCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec
Q 020319 158 GLVQEVAKARDVGVNSVVL-FPK-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlL-Fgv-i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc 220 (327)
++.+.++.+.+.|...|-| +|. .+...+|..|+...+.--.+.+.|+.+++..+ +.|..++.
T Consensus 68 ~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r 131 (231)
T cd02801 68 TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIR 131 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence 4777778888889999988 443 12235788898888888889999999999887 55666654
No 98
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.98 E-value=27 Score=33.82 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHH
Q 020319 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA 275 (327)
Q Consensus 197 glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~a 275 (327)
|-+.++|+.+|+++|+ ..|+++| + |++ ||+..+++|||+|-=-.| ....
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VEv--------------------~---tle----ea~~A~~~GaDiI~LDn~---~~e~ 215 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIEC--------------------E---SLE----EAKNAMNAGADIVMCDNM---SVEE 215 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEe--------------------C---CHH----HHHHHHHcCCCEEEECCC---CHHH
Confidence 4578899999999994 7777644 2 333 778888999999985444 4566
Q ss_pred HHHHHHH--CCCCCceee
Q 020319 276 IRAALDA--EGFQHVSIM 291 (327)
Q Consensus 276 IR~aLD~--~Gf~~v~IM 291 (327)
|+++... .++.++.|.
T Consensus 216 l~~~v~~~~~~~~~~~ie 233 (273)
T PRK05848 216 IKEVVAYRNANYPHVLLE 233 (273)
T ss_pred HHHHHHHhhccCCCeEEE
Confidence 6666654 555555444
No 99
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=66.98 E-value=11 Score=35.82 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec---ccCCCCCCcceeecC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGIVRE 235 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~-~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc---Lc~YTshGHcGIl~~ 235 (327)
.+.++.+.+.|+..|-+|--+.+. .+...+..--..-..+.++|+..|+.- +.|..-+| -|||
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G--~~v~~~i~~~f~~~~----------- 142 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAG--LRVRGYVSTAFGCPY----------- 142 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeEecCCC-----------
Confidence 567899999999999888544331 122222111111123344555555553 33332222 2444
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
.|.+ +.+.+.+.+-...++|||.|.-.||.= -.|.++|+.+
T Consensus 143 ~~~~----~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 143 EGEV----PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERF 191 (274)
T ss_pred CCCC----CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHC
Confidence 2333 344455555555679999999999864 3466777665
No 100
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=66.85 E-value=8 Score=39.21 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCc-ccccCcCCCCcHHHHHHHHHHHCCCeeEEe--------eecccCCCCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSP-TGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--------DVALDPYSSDG 228 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~-~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit--------DVcLc~YTshG 228 (327)
+-++.++.+.+.|.+-+.+.|... ++|.. .|-.- -.+|++||+.+|++-|++ |++.|- .-+|
T Consensus 156 kTvd~ak~~e~aG~~~ltVHGRtr-~~kg~~~~pad-------~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~-~~tG 226 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTVHGRTR-EQKGLKTGPAD-------WEAIKAVRENVPDIPVIANGNILSLEDVERCL-KYTG 226 (358)
T ss_pred HHHHHHHHHHhCCCcEEEEecccH-HhcCCCCCCcC-------HHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHH-HHhC
Confidence 467777889999999999999854 35543 22222 369999999999988876 666662 3368
Q ss_pred cceeecCCCccccHHHH
Q 020319 229 HDGIVREDGVIMNDETV 245 (327)
Q Consensus 229 HcGIl~~~G~IdND~Tv 245 (327)
=+||+-..|.+.|-+-.
T Consensus 227 ~dGVM~arglL~NPa~F 243 (358)
T KOG2335|consen 227 ADGVMSARGLLYNPALF 243 (358)
T ss_pred CceEEecchhhcCchhh
Confidence 89999767877776543
No 101
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=66.53 E-value=45 Score=30.18 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC--CCeeEEeeecccCCCCCCcceeecC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f--Pdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
..+.+++++++.|...|.+--.+ |+.. +.-+.+.++.+++.. -.+-+|.|+.++ -.|.|
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~----~~~~-------~~~~~~~i~~v~~~~~~~g~~~iie~~~~----g~~~~---- 137 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYV----GSEE-------EREMLEELARVAAEAHKYGLPLIAWMYPR----GPAVK---- 137 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEec----CCch-------HHHHHHHHHHHHHHHHHcCCCEEEEEecc----CCccc----
Confidence 46788999999999988442221 2111 123444555555421 144455577663 22322
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
...+++++++++++| +++|||+|.-+-- +-+..+++..+..
T Consensus 138 --~~~~~~~i~~~~~~a---~~~GaD~Ik~~~~--~~~~~~~~i~~~~ 178 (235)
T cd00958 138 --NEKDPDLIAYAARIG---AELGADIVKTKYT--GDAESFKEVVEGC 178 (235)
T ss_pred --CccCHHHHHHHHHHH---HHHCCCEEEecCC--CCHHHHHHHHhcC
Confidence 124556676665554 4799999998743 3467777777544
No 102
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=66.46 E-value=11 Score=37.11 Aligned_cols=54 Identities=13% Similarity=0.272 Sum_probs=40.8
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCee
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~ 214 (327)
+.++.+ ++.++++.+.+.|++.|.|.+=-++..+ +-.-+.++|+.||+.||++-
T Consensus 101 ~~Ls~e-EI~~~a~~~~~~Gv~~i~lvgGe~p~~~---------~~e~l~eii~~Ik~~~p~i~ 154 (366)
T TIGR02351 101 KKLNEE-EIEREIEAIKKSGFKEILLVTGESEKAA---------GVEYIAEAIKLAREYFSSLA 154 (366)
T ss_pred CcCCHH-HHHHHHHHHHhCCCCEEEEeeCCCCCCC---------CHHHHHHHHHHHHHhCCccc
Confidence 667886 7999999999999999998742122211 12357889999999999764
No 103
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.90 E-value=49 Score=30.89 Aligned_cols=109 Identities=11% Similarity=0.167 Sum_probs=65.0
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcce
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcG 231 (327)
+-++ .+.+.++.+++.|++.+++.|... +...=..---.+.++...+... ++.|++=|+
T Consensus 18 iD~~-~~~~~i~~l~~~Gv~gl~v~GstG--------E~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~----------- 77 (284)
T cd00950 18 VDFD-ALERLIEFQIENGTDGLVVCGTTG--------ESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG----------- 77 (284)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECCCCc--------chhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-----------
Confidence 4454 688999999999999999998532 2221111223344555555443 355543111
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee--cCCCCC----CchHHHHHHHHHHCCCCCceeeehh
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV--SPSDMM----DGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiV--APSDMM----DGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
..+.+...++|-...++|||.| .|-.+. |+-+...|+..+. .+.+|+=|-
T Consensus 78 ----------~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~---~~~pi~lYn 133 (284)
T cd00950 78 ----------SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA---TDLPVILYN 133 (284)
T ss_pred ----------CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc---CCCCEEEEE
Confidence 1133344556777788999932 332222 5777788888775 367898884
No 104
>PRK09234 fbiC FO synthase; Reviewed
Probab=65.29 E-value=53 Score=36.66 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=39.8
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccccCcCCC------CcHHHHHHHHHHHC
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDN------GLVPRTIWLLKDRY 210 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlL-Fgvi~~~~KD~~Gs~A~n~~------glV~rAIr~iK~~f 210 (327)
+.-|.++.+ ++++.++++.++|++.+++ +|.-|+ .+-....+.++.. -.+...++.||++.
T Consensus 97 ~~~~~ls~e-EIl~~a~~~~~~G~~e~l~t~G~~P~-~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~ 164 (843)
T PRK09234 97 LEAAYLSPD-EVLDIARAGAAAGCKEALFTLGDRPE-DRWPEAREWLDERGYDSTLDYVRAMAIRVLEET 164 (843)
T ss_pred CccccCCHH-HHHHHHHHHHHCCCCEEEEecCCCCc-cccccccccccccccccHHHHHHHHHHHHHHhc
Confidence 345778986 7999999999999999766 565342 2211112222222 35777899999874
No 105
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=65.29 E-value=41 Score=33.50 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCCeEEEee----cC--------CCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCC
Q 020319 159 LVQEVAKARDVGVNSVVLFP----KV--------PDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFg----vi--------~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YT 225 (327)
..+-++.+.+.|...|-|-+ .+ .+.-.|+.|..--|.--++.+.|+.||++.+ +..|..=++.+.|.
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~ 231 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYI 231 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhc
Confidence 34444567789999998854 21 3345677776666677788899999999996 67777666665553
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 226 shGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
.....+-...+...+.-.|++...+.+-.+.++|+|.|..|.
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 221111000000112223445445566667889999998874
No 106
>PRK07094 biotin synthase; Provisional
Probab=64.91 E-value=31 Score=32.72 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=36.9
Q ss_pred ceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeE
Q 020319 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (327)
Q Consensus 150 v~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~V 215 (327)
.|+++.+ +++++++.+.+.|++.|.|-+--+.. ++ ..-+.+.++.||+. +++-+
T Consensus 67 r~~ls~e-ei~~~~~~~~~~g~~~i~l~gG~~~~---------~~-~~~l~~l~~~i~~~-~~l~i 120 (323)
T PRK07094 67 RYRLSPE-EILECAKKAYELGYRTIVLQSGEDPY---------YT-DEKIADIIKEIKKE-LDVAI 120 (323)
T ss_pred CcCCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC---------CC-HHHHHHHHHHHHcc-CCceE
Confidence 4566875 69999999999999998875421111 11 12467788899887 66543
No 107
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=64.83 E-value=45 Score=32.16 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=64.4
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcce
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcG 231 (327)
+-.+ .+.+.++.+++.|+..|.+.|.. |+-..=.+-=-.+.++..++... ++-||+=|
T Consensus 26 iD~~-~l~~lv~~li~~Gv~Gi~v~Gst--------GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv------------ 84 (309)
T cd00952 26 VDLD-ETARLVERLIAAGVDGILTMGTF--------GECATLTWEEKQAFVATVVETVAGRVPVFVGA------------ 84 (309)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECccc--------ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe------------
Confidence 3443 57888899999999999999852 33222222222344444444433 35555411
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCCC---CCchHHHHHHHHHHCCCCCceeeehh
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSDM---MDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiV---APSDM---MDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
|...-++++ ++|-..+++|||.| .|.-. -|+-+..-|+..|..+ +++||=|-
T Consensus 85 -----~~~~t~~ai----~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~--~lPv~iYn 142 (309)
T cd00952 85 -----TTLNTRDTI----ARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVP--EMAIAIYA 142 (309)
T ss_pred -----ccCCHHHHH----HHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCC--CCcEEEEc
Confidence 111223444 46777788899943 34211 1677888888877652 57888884
No 108
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=64.68 E-value=43 Score=32.84 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgv---------i~--~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTs 226 (327)
..+-++.+.+.|...|-|-+- -| +.-+|+.|..--|.--++...|++||++.+ ++.|..=+..++|-.
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 444455678899999988651 23 234588887655666788889999999984 677887777665522
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcC-CCeecCC
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAG-ADVVSPS 266 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AG-ADiVAPS 266 (327)
+| ++-|++++ .+-.+.++| +|+|.-|
T Consensus 223 ---------~G-~~~~e~~~----~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 223 ---------GG-LSPDEALE----IAARLAAEGLIDYVNVS 249 (343)
T ss_pred ---------CC-CCHHHHHH----HHHHHHhcCCCCEEEeC
Confidence 22 34456654 456667898 8988765
No 109
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=64.36 E-value=32 Score=33.74 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCCeEEEee----------c-CCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-----CeeEEeeeccc
Q 020319 159 LVQEVAKARDVGVNSVVLFP----------K-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-----DLVIYTDVALD 222 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFg----------v-i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-----dl~VitDVcLc 222 (327)
..+-++.+.+.|...|-|-. - ..+.-.|+.|-.--|---++.+.|++||++++ ++.|..-+..+
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 44445577889999998853 1 12334677776655666778889999999985 78888887765
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 223 ~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
+|.. |-++-++++ +.+-.+.++|+|.|.-|.
T Consensus 226 ~~~~----------~g~~~ee~~----~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 226 EPEE----------PGIRMEDTL----ALVDKLADKGLDYLHISL 256 (353)
T ss_pred cccC----------CCCCHHHHH----HHHHHHHHcCCCEEEecc
Confidence 5421 223334443 455555789999998765
No 110
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.33 E-value=18 Score=35.05 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=52.9
Q ss_pred CCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
.|....+-++-+-++++.+++++|..-|+|=. .++ -.+.++++.++..+|++.|.+
T Consensus 179 ~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn--------------~~~-e~l~~~v~~~~~~~~~~~ieA--------- 234 (273)
T PRK05848 179 IPFTAKIEIECESLEEAKNAMNAGADIVMCDN--------------MSV-EEIKEVVAYRNANYPHVLLEA--------- 234 (273)
T ss_pred CCCCceEEEEeCCHHHHHHHHHcCCCEEEECC--------------CCH-HHHHHHHHHhhccCCCeEEEE---------
Confidence 45322333333458999999999999777511 111 346778888877778876655
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
.|-| |-++++ .+|+.|+|+|+=+.
T Consensus 235 ---------sGgI-t~~ni~-------~ya~~GvD~IsvG~ 258 (273)
T PRK05848 235 ---------SGNI-TLENIN-------AYAKSGVDAISSGS 258 (273)
T ss_pred ---------ECCC-CHHHHH-------HHHHcCCCEEEeCh
Confidence 3666 666555 57899999997654
No 111
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=64.16 E-value=64 Score=30.52 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHc-CCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcceeecC
Q 020319 158 GLVQEVAKARDV-GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 158 ~l~~ev~~~~~l-GI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl~~ 235 (327)
.+.+.++.+++. |++.|+++|.. |+...=..---.+.++...+... .+-||+=|
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~Gst--------GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv---------------- 77 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGST--------GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV---------------- 77 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhCCCCeEEecc----------------
Confidence 588888899999 99999999953 33222222233445555554433 34444411
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee---cCCCC---CCchHHHHHHHHHHCCCCCceeeehh
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVV---SPSDM---MDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiV---APSDM---MDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
|. .+.+...+.|-...++|||.| .|.-. -|+-+...++..+... +.+||=|-
T Consensus 78 -~~----~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~--~lpi~iYn 135 (288)
T cd00954 78 -GS----LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAA--SLPMIIYH 135 (288)
T ss_pred -CC----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCCEEEEe
Confidence 11 123333445666679999986 34221 1677788888877641 46888884
No 112
>PRK01362 putative translaldolase; Provisional
Probab=64.08 E-value=10 Score=35.39 Aligned_cols=47 Identities=38% Similarity=0.588 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCCCceeeehhhh
Q 020319 249 CKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 249 ak~Als~A~AGADiVAPS-----DM-MDG--RV~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
.+||+.-|+|||+.|||= |. -|| .|..|++.++.+|+ ++-||+=|-|
T Consensus 112 ~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~-~tkilaAS~r 166 (214)
T PRK01362 112 ANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGF-DTEIIAASVR 166 (214)
T ss_pred HHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCC-CcEEEEeecC
Confidence 569999999999999992 11 122 36788999999987 6888876544
No 113
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=63.81 E-value=16 Score=40.57 Aligned_cols=140 Identities=26% Similarity=0.381 Sum_probs=82.7
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
|+-..|.++ --+..++++++.|..- .++ ||-.|.. .|. -..--|.+|+++||||-| ..|
T Consensus 710 p~rtKY~L~-YY~nlad~lV~agtHi---L~I-----KDMAG~l--KP~-aa~lLi~alRdk~PdlPi---------HvH 768 (1176)
T KOG0369|consen 710 PSRTKYNLD-YYLNLADKLVKAGTHI---LGI-----KDMAGVL--KPE-AAKLLIGALRDKFPDLPI---------HVH 768 (1176)
T ss_pred cccccccHH-HHHHHHHHHHhccCeE---Eee-----hhhhccc--CHH-HHHHHHHHHHhhCCCCce---------EEe
Confidence 444567775 5788899999999763 232 4444431 111 112357788999999855 335
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCch-----HHHHHHHHHHC----CCCCceeeehhhhh
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGR-----VGAIRAALDAE----GFQHVSIMSYTAKY 297 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA-PSDMMDGR-----V~aIR~aLD~~----Gf~~v~IMSYSAKy 297 (327)
-||- .| +-| .--+.-|+||||+|- --|-|-|. ++|+=..|+.. |+.---|--|++-+
T Consensus 769 tHDt----sG-----agV----AsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYW 835 (1176)
T KOG0369|consen 769 THDT----SG-----AGV----ASMLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYW 835 (1176)
T ss_pred ccCC----cc-----HHH----HHHHHHHHcCCceeeeecccccccccCCchhhhhhhccCCcccCCCchHHHHHHHHHH
Confidence 5542 12 111 234567899999983 34566664 57777777553 22111145677666
Q ss_pred hc--cccchhHHHhhcCCCCCCCcccCC
Q 020319 298 AS--SFYGPFREALDSNPRFGDKKTKLQ 323 (327)
Q Consensus 298 AS--sfYGPFRdAa~Sap~fGDRktYQm 323 (327)
++ -+|.||--+. .-+-||-.-||-
T Consensus 836 e~~R~LYapFe~tt--tmksgn~dVY~h 861 (1176)
T KOG0369|consen 836 EQMRLLYAPFECTT--TMKSGNSDVYQH 861 (1176)
T ss_pred HHHhhhhchhhhcc--cccCCCcchhhc
Confidence 65 5899997643 233356666653
No 114
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=63.57 E-value=78 Score=30.70 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=66.8
Q ss_pred eeEEEeeCCCCcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCccc-----ccCcCCCCcHH---HH
Q 020319 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG-----DEAYNDNGLVP---RT 202 (327)
Q Consensus 131 ~PlFV~eg~~~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~G-----s~A~n~~glV~---rA 202 (327)
.||+|.... + ++ ++.+.++.+.+.|+..|.++..+.....|... ...+.-....+ +.
T Consensus 166 iPV~vKl~p---------~-----~~-~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~ 230 (334)
T PRK07565 166 IPVAVKLSP---------Y-----FS-NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRW 230 (334)
T ss_pred CcEEEEeCC---------C-----ch-hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHH
Confidence 699998642 1 12 35666777889999999999865322222111 01122222233 44
Q ss_pred HHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc------hHH
Q 020319 203 IWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG------RVG 274 (327)
Q Consensus 203 Ir~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS--DMMDG------RV~ 274 (327)
|+.+++.. ++-||. .|-|.|=+ .|+.+-.+|||.|.=. =|.+| -+.
T Consensus 231 v~~~~~~~-~ipIig------------------~GGI~s~~-------Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~ 284 (334)
T PRK07565 231 IAILSGRV-GADLAA------------------TTGVHDAE-------DVIKMLLAGADVVMIASALLRHGPDYIGTILR 284 (334)
T ss_pred HHHHHhhc-CCCEEE------------------ECCCCCHH-------HHHHHHHcCCCceeeehHHhhhCcHHHHHHHH
Confidence 55555544 343433 24455433 3444556899988654 23444 456
Q ss_pred HHHHHHHHCCCCCc
Q 020319 275 AIRAALDAEGFQHV 288 (327)
Q Consensus 275 aIR~aLD~~Gf~~v 288 (327)
.|++.|+..||.++
T Consensus 285 ~L~~~l~~~g~~~i 298 (334)
T PRK07565 285 GLEDWMERHGYESL 298 (334)
T ss_pred HHHHHHHHcCCCCH
Confidence 68888899999664
No 115
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=63.52 E-value=19 Score=32.29 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
-+++++++++.|+..|+|=- +++ .-+.++++.+++.+|.+.|.+ .+|
T Consensus 89 ~~ee~~ea~~~g~d~I~lD~--------------~~~-~~~~~~v~~l~~~~~~v~ie~-----------------SGG- 135 (169)
T PF01729_consen 89 NLEEAEEALEAGADIIMLDN--------------MSP-EDLKEAVEELRELNPRVKIEA-----------------SGG- 135 (169)
T ss_dssp SHHHHHHHHHTT-SEEEEES---------------CH-HHHHHHHHHHHHHTTTSEEEE-----------------ESS-
T ss_pred CHHHHHHHHHhCCCEEEecC--------------cCH-HHHHHHHHHHhhcCCcEEEEE-----------------ECC-
Confidence 37899999999999998821 122 568899999999999865554 123
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
| |.++++ .||+.|+|+++=+
T Consensus 136 I-~~~ni~-------~ya~~gvD~isvg 155 (169)
T PF01729_consen 136 I-TLENIA-------EYAKTGVDVISVG 155 (169)
T ss_dssp S-STTTHH-------HHHHTT-SEEEEC
T ss_pred C-CHHHHH-------HHHhcCCCEEEcC
Confidence 2 344454 4678899998643
No 116
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=63.31 E-value=33 Score=33.12 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=75.1
Q ss_pred ccCCCCCceEec-----chhhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeE
Q 020319 143 PIGAMPGCYRLG-----WRHGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (327)
Q Consensus 143 ~I~SMPGv~r~s-----id~~l~~ev~~~~~lGI~sVlL--Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~V 215 (327)
...-|||=.+|+ +-+..+++++.+.+.|+.+||+ |+-+|- .| ..+-+.- -.+.+.++++|+.++-
T Consensus 9 Hl~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~-~~-~~~p~tv---a~m~~i~~~v~~~~~~--- 80 (257)
T TIGR00259 9 HLLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPF-LK-EVDPETV---AAMAVIAGQLKSDVSI--- 80 (257)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCC-cC-CCCHHHH---HHHHHHHHHHHHhcCC---
Confidence 346678877775 2224677777888999999999 443442 22 1121111 2355677888888731
Q ss_pred EeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHH-HcCCCe----------ecCCCCCCchHHHHHHHHHH
Q 020319 216 YTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQA-RAGADV----------VSPSDMMDGRVGAIRAALDA 282 (327)
Q Consensus 216 itDVcLc~YTshGHcGI--l~~~G~IdND~Tv~~Lak~Als~A-~AGADi----------VAPSDMMDGRV~aIR~aLD~ 282 (327)
| +|| |+. |+.++ ++.| .+|||. +++..+++|+-+.+=+.-++
T Consensus 81 -------p------~GvnvL~n----d~~aa--------l~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~ 135 (257)
T TIGR00259 81 -------P------LGINVLRN----DAVAA--------LAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKL 135 (257)
T ss_pred -------C------eeeeeecC----CCHHH--------HHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHH
Confidence 1 443 332 33333 3333 457775 57888899888876555555
Q ss_pred CCCCCceeeehhhhhhcc
Q 020319 283 EGFQHVSIMSYTAKYASS 300 (327)
Q Consensus 283 ~Gf~~v~IMSYSAKyASs 300 (327)
-| .+|.|++.--+=++.
T Consensus 136 l~-~~v~i~adV~~kh~~ 152 (257)
T TIGR00259 136 LG-SEVKILADIVVKHAV 152 (257)
T ss_pred cC-CCcEEEeceeecccC
Confidence 55 689999987544444
No 117
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=62.77 E-value=57 Score=31.90 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgv-----------i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTs 226 (327)
..+-++.+.+.|...|-|.+- ..+.-+|+.|-.-.|.--++.+.|++||++++ ++.|..=+....|.
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~- 217 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV- 217 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC-
Confidence 455566778899999999771 12345788887666777788899999999995 67776433332221
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
+ |-.+.++++ +.+-.+.++|+|.|.=|-.
T Consensus 218 --------~-~g~~~~e~~----~i~~~Le~~G~d~i~vs~g 246 (353)
T cd02930 218 --------E-GGSTWEEVV----ALAKALEAAGADILNTGIG 246 (353)
T ss_pred --------C-CCCCHHHHH----HHHHHHHHcCCCEEEeCCC
Confidence 1 123445554 3455567899999977643
No 118
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=62.73 E-value=28 Score=34.38 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
-.+|++.+.++|+.-| + +|+-..| +..-++.+|.+| +..+|+|+.
T Consensus 76 ~~~Ea~~L~eaGvDiI------D-------aT~r~rP---~~~~~~~iK~~~-~~l~MAD~s------------------ 120 (283)
T cd04727 76 HFVEAQILEALGVDMI------D-------ESEVLTP---ADEEHHIDKHKF-KVPFVCGAR------------------ 120 (283)
T ss_pred HHHHHHHHHHcCCCEE------e-------ccCCCCc---HHHHHHHHHHHc-CCcEEccCC------------------
Confidence 3889999999998865 1 2222333 678999999999 999999863
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
|++ .|+.-.++|||+|+.-
T Consensus 121 -----tle----Eal~a~~~Gad~I~TT 139 (283)
T cd04727 121 -----NLG----EALRRISEGAAMIRTK 139 (283)
T ss_pred -----CHH----HHHHHHHCCCCEEEec
Confidence 222 6888899999999875
No 119
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=62.50 E-value=29 Score=34.03 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=43.7
Q ss_pred cCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccC
Q 020319 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (327)
Q Consensus 144 I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~ 223 (327)
..+|=-+.+ .+|++++.++.+.|...++|=|-.+ .+|+--+ --.-..++++|++. .|.+.+
T Consensus 33 L~~Mi~vt~----~~l~k~~~el~kkGy~g~llSGGm~-----srg~VPl---~kf~d~lK~lke~~-~l~ina------ 93 (275)
T COG1856 33 LEHMIKVTT----KSLLKRCMELEKKGYEGCLLSGGMD-----SRGKVPL---WKFKDELKALKERT-GLLINA------ 93 (275)
T ss_pred HHHhcccch----HHHHHHHHHHHhcCceeEEEeCCcC-----CCCCccH---HHHHHHHHHHHHhh-CeEEEE------
Confidence 345544444 2589999999999999999987422 2333221 11245788888874 455555
Q ss_pred CCCCCcceeec
Q 020319 224 YSSDGHDGIVR 234 (327)
Q Consensus 224 YTshGHcGIl~ 234 (327)
|-|+++
T Consensus 94 -----HvGfvd 99 (275)
T COG1856 94 -----HVGFVD 99 (275)
T ss_pred -----Eeeecc
Confidence 888886
No 120
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=62.48 E-value=13 Score=34.22 Aligned_cols=44 Identities=39% Similarity=0.579 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCCCceeeehhhh
Q 020319 249 CKQAVSQARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 249 ak~Als~A~AGADiVAPSDMMDGR-----------V~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
.+||..-++|||++|||- =|| |..|++.++..|+ ++-||.=|.|
T Consensus 112 ~~Qa~~Aa~AGA~yvsP~---vgR~~~~g~dg~~~i~~i~~~~~~~~~-~tkil~As~r 166 (211)
T cd00956 112 AAQALLAAKAGATYVSPF---VGRIDDLGGDGMELIREIRTIFDNYGF-DTKILAASIR 166 (211)
T ss_pred HHHHHHHHHcCCCEEEEe---cChHhhcCCCHHHHHHHHHHHHHHcCC-CceEEecccC
Confidence 359999999999999993 455 6788888988887 5566654433
No 121
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=62.30 E-value=1.2e+02 Score=27.30 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCC-CcHHHHHHHHHHHCCCeeEEeee
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYPDLVIYTDV 219 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~-glV~rAIr~iK~~fPdl~VitDV 219 (327)
.++++++.+.|...|++-. +.. . +++ ..+...++.+|+. +++.+++++
T Consensus 78 ~~~v~~a~~aGad~I~~d~--~~~-~--------~p~~~~~~~~i~~~~~~-~~i~vi~~v 126 (221)
T PRK01130 78 LKEVDALAAAGADIIALDA--TLR-P--------RPDGETLAELVKRIKEY-PGQLLMADC 126 (221)
T ss_pred HHHHHHHHHcCCCEEEEeC--CCC-C--------CCCCCCHHHHHHHHHhC-CCCeEEEeC
Confidence 4678999999999555432 211 1 111 3456788888887 788888764
No 122
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=61.83 E-value=71 Score=30.27 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=63.2
Q ss_pred hHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcceeecC
Q 020319 158 GLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 158 ~l~~ev~~~~~-lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl~~ 235 (327)
.+.+.++.+++ .|++.|++.|.. |+...=...--.+.++...+... .+-||+=|
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~Gst--------GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagv---------------- 80 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGST--------GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQV---------------- 80 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc--------cccccCCHHHHHHHHHHHHHHhCCCCCEEecC----------------
Confidence 58888999999 999999999952 33221111222344454444443 34455411
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeec---CCC---CCCchHHHHHHHHHHCCCCCceeeehh
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVS---PSD---MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVA---PSD---MMDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
|...-++++ ++|-...++|||.|. |.- .-||-+...++..+.. +.+||-|-
T Consensus 81 -g~~~t~~ai----~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~---~lPv~iYn 137 (293)
T PRK04147 81 -GSVNTAEAQ----ELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSA---DNPMIVYN 137 (293)
T ss_pred -CCCCHHHHH----HHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC---CCCEEEEe
Confidence 211223443 356666888998653 321 1278888888888875 56999884
No 123
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=61.61 E-value=1.1e+02 Score=28.80 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=63.6
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcce
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcG 231 (327)
+.++ .+.+.++.+++.|++.+++.|... +...=..-=-.+.++.+.+... ++-|++=|+
T Consensus 19 iD~~-~l~~~i~~l~~~Gv~gi~~~Gs~G--------E~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~----------- 78 (292)
T PRK03170 19 VDFA-ALRKLVDYLIANGTDGLVVVGTTG--------ESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG----------- 78 (292)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECCcCC--------ccccCCHHHHHHHHHHHHHHhCCCCcEEeecC-----------
Confidence 4554 688999999999999999998632 2222111222344554444443 344543111
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCCC---CCchHHHHHHHHHHCCCCCceeeehh
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSDM---MDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiV---APSDM---MDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
. .+.+...++|-...++|||.| .|.=- -||-+...++..|.. +.+|+=|-
T Consensus 79 --------~--~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~---~~pv~lYn 134 (292)
T PRK03170 79 --------S--NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT---DLPIILYN 134 (292)
T ss_pred --------C--chHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC---CCCEEEEE
Confidence 1 122333446666678899944 33210 167888888887764 57888884
No 124
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.51 E-value=38 Score=35.42 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcceeecCCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHcGIl~~~G 237 (327)
..+.++.|++.|+..|.+= +.+ ..+-.+.++|+.||+.||+ +.|++ |
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd--~a~-----------g~~~~~~~~i~~ir~~~~~~~~V~a-------------------G 290 (502)
T PRK07107 243 YAERVPALVEAGADVLCID--SSE-----------GYSEWQKRTLDWIREKYGDSVKVGA-------------------G 290 (502)
T ss_pred HHHHHHHHHHhCCCeEeec--Ccc-----------cccHHHHHHHHHHHHhCCCCceEEe-------------------c
Confidence 5677777888887776531 111 1122346788888888874 66654 4
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
.|..-+ +|....+||||.|
T Consensus 291 nV~t~e-------~a~~li~aGAd~I 309 (502)
T PRK07107 291 NVVDRE-------GFRYLAEAGADFV 309 (502)
T ss_pred cccCHH-------HHHHHHHcCCCEE
Confidence 444333 4555567999997
No 125
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=61.49 E-value=67 Score=33.01 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
-.+.++.+++.|+.-+ . ++.. .|.. .+ +...|+.||+++|++.|+.
T Consensus 229 ~~e~a~~L~~agvdvi-v---vD~a----~g~~----~~-vl~~i~~i~~~~p~~~vi~ 274 (486)
T PRK05567 229 NEERAEALVEAGVDVL-V---VDTA----HGHS----EG-VLDRVREIKAKYPDVQIIA 274 (486)
T ss_pred hHHHHHHHHHhCCCEE-E---EECC----CCcc----hh-HHHHHHHHHhhCCCCCEEE
Confidence 4688889999999943 2 2221 1111 23 6678999999999877664
No 126
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=61.27 E-value=53 Score=27.89 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=66.8
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHH-CCCeeEEeeecccCCCCCCcceee---cCC-
Q 020319 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR-YPDLVIYTDVALDPYSSDGHDGIV---RED- 236 (327)
Q Consensus 162 ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~-fPdl~VitDVcLc~YTshGHcGIl---~~~- 236 (327)
.++.+.+.|++-|.+... .+ ..+....-..|.......+.+.+++. +-++.++.+.--..++...=.|+. .+.
T Consensus 71 ~~~~l~~~~ip~v~~~~~-~~-~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 71 IVKLARKAGIPVVLVDRD-IP-DGDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAG 148 (264)
T ss_pred HHHHhhhcCCCEEEeccC-CC-CCcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence 456667777776655432 21 11222333344455556666666654 445666644221112110001110 000
Q ss_pred -----CccccHHHHHHHHHHHHHHHHcC--CC-eecCCCCCCchHHHHHHHHHHCCC---CCceeeehhhhhhccccch
Q 020319 237 -----GVIMNDETVHQLCKQAVSQARAG--AD-VVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYTAKYASSFYGP 304 (327)
Q Consensus 237 -----G~IdND~Tv~~Lak~Als~A~AG--AD-iVAPSDMMDGRV~aIR~aLD~~Gf---~~v~IMSYSAKyASsfYGP 304 (327)
..+..+.+.+...+.....-++| +| +++++|.+.- .+-+++.+.|. .++.|+++-..-.+.+++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~---~~~~~~~~~g~~i~~~i~i~~~d~~~~~~~~~~ 224 (264)
T cd01537 149 PIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAANDDMAL---GALRALREAGLRVPDDISVIGFDGTPEALLAGP 224 (264)
T ss_pred CcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH---HHHHHHHHhCCCCCCCeEEEeecCccHHHhhCC
Confidence 11112222233333444445566 66 7788776532 23457888999 5899999876554444444
No 127
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.13 E-value=17 Score=33.77 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=42.7
Q ss_pred CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 141 ~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+..|..+||++- ..|+..++++|.+.|.|||- .. .|. +.-|+.||.=||++-+|.
T Consensus 95 ~~~i~~iPG~~T-------ptEi~~A~~~Ga~~vK~FPa-~~-----~GG---------~~yikal~~plp~~~l~p 149 (201)
T PRK06015 95 DSDVPLLPGAAT-------PSEVMALREEGYTVLKFFPA-EQ-----AGG---------AAFLKALSSPLAGTFFCP 149 (201)
T ss_pred HcCCCEeCCCCC-------HHHHHHHHHCCCCEEEECCc-hh-----hCC---------HHHHHHHHhhCCCCcEEe
Confidence 468999999943 56899999999999999994 10 111 357999999999877664
No 128
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=60.80 E-value=62 Score=28.27 Aligned_cols=78 Identities=27% Similarity=0.291 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
.+++.++.+.|...|.+-++.+...|. ....+.| -..++.+++.++++-|++ .|-|
T Consensus 114 ~~e~~~a~~~gaD~v~~~~~~~~~~~~----~~~~~~g--~~~~~~~~~~~~~~~v~a------------------~GGI 169 (212)
T PRK00043 114 LEEAAAALAAGADYVGVGPIFPTPTKK----DAKAPQG--LEGLREIRAAVGDIPIVA------------------IGGI 169 (212)
T ss_pred HHHHHHHhHcCCCEEEECCccCCCCCC----CCCCCCC--HHHHHHHHHhcCCCCEEE------------------ECCc
Confidence 567888899999998764443322221 1111112 457888888887655544 2444
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeec-CCCCC
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVS-PSDMM 269 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVA-PSDMM 269 (327)
|.+++. ...++|||.|+ -|..+
T Consensus 170 -~~~~i~-------~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 170 -TPENAP-------EVLEAGADGVAVVSAIT 192 (212)
T ss_pred -CHHHHH-------HHHHcCCCEEEEeHHhh
Confidence 455544 45678999887 34444
No 129
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=60.73 E-value=13 Score=32.59 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceee
Q 020319 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIM 291 (327)
Q Consensus 241 ND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~IM 291 (327)
.|-|.+.+++.|..+ +||+|+=|.||-... ..+.+.|+++|..++.||
T Consensus 37 ~~v~~e~~v~aa~~~---~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vi 87 (134)
T TIGR01501 37 VLSPQEEFIKAAIET---KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLY 87 (134)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEE
Confidence 678899999888655 999999999997655 556678899999777664
No 130
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=60.73 E-value=43 Score=32.79 Aligned_cols=173 Identities=16% Similarity=0.180 Sum_probs=97.3
Q ss_pred CCChhhHhhhccCCCCCC---------------CceeeEEEeeCCC-C---cccCCCCCceEecchhhHHHHHHHHHHcC
Q 020319 110 RKSPAMRASFQETNLSPA---------------NFVYPLFIHEGEE-D---TPIGAMPGCYRLGWRHGLVQEVAKARDVG 170 (327)
Q Consensus 110 R~~~~lR~l~~Et~Ls~~---------------dLI~PlFV~eg~~-~---~~I~SMPGv~r~sid~~l~~ev~~~~~lG 170 (327)
.....+|+++++..|+.= .-..=|-+.++=+ . =.|+..-|-.+...+ +++++++.+.++|
T Consensus 29 ~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~e-ei~~~a~~~~~~G 107 (302)
T TIGR00510 29 TVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHGTATFMILGDICTRRCPFCDVAHGRNPLPPDPE-EPAKLAETIKDMG 107 (302)
T ss_pred chHHHHHHHHHHCCCceeecCCCCCCcccccCCCEEEEEecCcCcCCCCCcCCccCCCCCCCCCHH-HHHHHHHHHHHCC
Confidence 334578889999888741 1222222334322 1 133333233334454 6999999999999
Q ss_pred CCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceee---cCCC---ccccHHH
Q 020319 171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV---REDG---VIMNDET 244 (327)
Q Consensus 171 I~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl---~~~G---~IdND~T 244 (327)
++.|+|=++--+++.| .| ..-+.+.|+.||+..|++.|-. |.+. -.|-+..+ .+.| .--|-+|
T Consensus 108 lkevvLTsv~~ddl~d-~g------~~~l~~li~~I~~~~p~i~Iev---l~~d-~~g~~e~l~~l~~aG~dv~~hnlEt 176 (302)
T TIGR00510 108 LKYVVITSVDRDDLED-GG------ASHLAECIEAIREKLPNIKIET---LVPD-FRGNIAALDILLDAPPDVYNHNLET 176 (302)
T ss_pred CCEEEEEeecCCCccc-cc------HHHHHHHHHHHHhcCCCCEEEE---eCCc-ccCCHHHHHHHHHcCchhhcccccc
Confidence 9999998762122222 11 1248899999999999865433 1110 11212221 1111 1123445
Q ss_pred HHHHHH------------HHHHHH-HcCCCeecCCCCCCch------HHHHHHHHHHCCCCCceeeehh
Q 020319 245 VHQLCK------------QAVSQA-RAGADVVSPSDMMDGR------VGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 245 v~~Lak------------~Als~A-~AGADiVAPSDMMDGR------V~aIR~aLD~~Gf~~v~IMSYS 294 (327)
+++|.+ ..+..| +++-++..=||||=|- +...=+.|.+.|+..+.|--|-
T Consensus 177 ~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl 245 (302)
T TIGR00510 177 VERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYL 245 (302)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeeccc
Confidence 544432 233333 4445788889999885 3333446778899999988875
No 131
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=60.71 E-value=65 Score=30.32 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC--CCeeEEeeecccCCCCCCcceeecC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f--Pdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
.++.+++++++.|...|.+--.+.. .+ +.-+.+-++.+++.. -++.++.-+ |..-.| + +
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g~-~~----------~~~~~~~~~~v~~~~~~~g~pl~vi~----~~~g~~---~-e 154 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVGS-ET----------EAEMLEDLGEVAEECEEWGMPLLAMM----YPRGPG---I-K 154 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecCC-hh----------HHHHHHHHHHHHHHHHHcCCcEEEEE----ecCCCc---c-C
Confidence 3677899999999998877433221 11 122555566666432 122222211 322111 1 2
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
++ .+++.+...+ -.-+++|||+|-.| .-|-+..+|+.....
T Consensus 155 ~~--~~~~~i~~a~---~~a~e~GAD~vKt~--~~~~~~~l~~~~~~~ 195 (267)
T PRK07226 155 NE--YDPEVVAHAA---RVAAELGADIVKTN--YTGDPESFREVVEGC 195 (267)
T ss_pred CC--ccHHHHHHHH---HHHHHHCCCEEeeC--CCCCHHHHHHHHHhC
Confidence 22 1233333333 44458999999888 456678888887643
No 132
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=60.38 E-value=1.3e+02 Score=27.08 Aligned_cols=103 Identities=24% Similarity=0.316 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
..+.++++++++|...|-+-..+. ..|+ +...-+.+-|..+++...++.+.. |+ +.+
T Consensus 70 ~k~~eve~A~~~GAdevdvv~~~g-~~~~-------~~~~~~~~ei~~v~~~~~g~~lkv--------------I~-e~~ 126 (203)
T cd00959 70 VKVAEAREAIADGADEIDMVINIG-ALKS-------GDYEAVYEEIAAVVEACGGAPLKV--------------IL-ETG 126 (203)
T ss_pred HHHHHHHHHHHcCCCEEEEeecHH-HHhC-------CCHHHHHHHHHHHHHhcCCCeEEE--------------EE-ecC
Confidence 588899999999999998854332 1221 112445556777776644332221 12 223
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHHHCCCCCceee
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALDAEGFQHVSIM 291 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD------GRV~aIR~aLD~~Gf~~v~IM 291 (327)
.. +|+.+...++ .-+++|||+|--|-=-- +.|..+++.+. ..++|.
T Consensus 127 ~l-~~~~i~~a~r---ia~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~v~ik 178 (203)
T cd00959 127 LL-TDEEIIKACE---IAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GRVGVK 178 (203)
T ss_pred CC-CHHHHHHHHH---HHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CCceEE
Confidence 33 3554555544 55789999998872212 55666777665 345554
No 133
>PRK08185 hypothetical protein; Provisional
Probab=60.22 E-value=28 Score=33.91 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcceeecCCCc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
.+.++++++.|.++||+=+. . ++.+--+.++.+.++-..+ .+.|-+.+ ||=|-. +++.
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S---~---------l~~eeNi~~t~~vv~~a~~~gv~vE~El--------G~vg~~-e~~~ 139 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGS---L---------LPYEENVALTKEVVELAHKVGVSVEGEL--------GTIGNT-GTSI 139 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCC---C---------CCHHHHHHHHHHHHHHHHHcCCeEEEEE--------eeccCc-cccc
Confidence 56788999999999998542 1 1222334444444432222 45554433 553321 1221
Q ss_pred c-ccHHHHHHHHHHHHHHHHc-CCCeecC-----CCCCCc---------hHHHHHHHH
Q 020319 239 I-MNDETVHQLCKQAVSQARA-GADVVSP-----SDMMDG---------RVGAIRAAL 280 (327)
Q Consensus 239 I-dND~Tv~~Lak~Als~A~A-GADiVAP-----SDMMDG---------RV~aIR~aL 280 (327)
. ..+...-.=.++|..+.+. |+|.+|+ ..+..+ ++..|++++
T Consensus 140 ~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 140 EGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred ccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 1 1111111123467777777 9999999 777654 567777654
No 134
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=59.91 E-value=50 Score=33.11 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL 221 (327)
+.++.++++.+.||..|-+ |.......+ .++|+.|++.+++..++.|+-+
T Consensus 17 ~~~~~~~~~~~~Gv~~ie~------------g~p~~~~~~--~~~i~~l~~~~~~~~ii~D~kl 66 (430)
T PRK07028 17 RAVEIAKEAVAGGADWIEA------------GTPLIKSEG--MNAIRTLRKNFPDHTIVADMKT 66 (430)
T ss_pred HHHHHHHHHHhcCCcEEEe------------CCHHHHHhh--HHHHHHHHHHCCCCEEEEEeee
Confidence 5788888899999988732 111111122 7899999999998888888544
No 135
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=59.89 E-value=15 Score=37.88 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=59.5
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcce
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcG 231 (327)
++.++ .+++.++++.+.|+..|-| ||..|.. +|. -+-+.|++||++++ + |..-|+||-
T Consensus 150 ~~~~~-~~~~~a~~l~~~Gad~I~i--------~Dt~G~l--~P~-~v~~lv~alk~~~~-~---------pi~~H~Hnt 207 (448)
T PRK12331 150 VHTID-YFVKLAKEMQEMGADSICI--------KDMAGIL--TPY-VAYELVKRIKEAVT-V---------PLEVHTHAT 207 (448)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEE--------cCCCCCC--CHH-HHHHHHHHHHHhcC-C---------eEEEEecCC
Confidence 45664 5888888999999987554 4555542 222 25568888998875 3 234588864
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc--h--HHHHHHHHHHCCC
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG--R--VGAIRAALDAEGF 285 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS--DMMDG--R--V~aIR~aLD~~Gf 285 (327)
. | .=..-++.-++||||+|-=| .|--| . +..+=.+|...|+
T Consensus 208 ~----G---------lA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~ 254 (448)
T PRK12331 208 S----G---------IAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGY 254 (448)
T ss_pred C----C---------cHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCC
Confidence 2 2 01124566689999997322 23222 1 2334456666777
No 136
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=59.68 E-value=16 Score=37.93 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=60.1
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcce
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcG 231 (327)
+++++ .+++.++++.+.|+..|-| ||..|-. +|. -+-+-|+.||++++ + |..-|+||-
T Consensus 149 ~~t~e-~~~~~a~~l~~~Gad~I~i--------~Dt~G~l--~P~-~v~~Lv~~lk~~~~-v---------pI~~H~Hnt 206 (467)
T PRK14041 149 VHTLE-YYLEFARELVDMGVDSICI--------KDMAGLL--TPK-RAYELVKALKKKFG-V---------PVEVHSHCT 206 (467)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEE--------CCccCCc--CHH-HHHHHHHHHHHhcC-C---------ceEEEecCC
Confidence 45664 6888899999999987554 5555542 232 25567888898875 2 345688863
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc----hHHHHHHHHHHCCC
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG----RVGAIRAALDAEGF 285 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS--DMMDG----RV~aIR~aLD~~Gf 285 (327)
. | .=...++.-++||||+|=-| .|--| -+..+=.+|...|+
T Consensus 207 ~----G---------lA~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 207 T----G---------LASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred C----C---------cHHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHhcCC
Confidence 2 2 01124566689999997433 23222 12334456666676
No 137
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=59.51 E-value=1.6e+02 Score=28.19 Aligned_cols=122 Identities=11% Similarity=0.154 Sum_probs=69.9
Q ss_pred eeeEEEeeCCCCcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHH
Q 020319 130 VYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (327)
Q Consensus 130 I~PlFV~eg~~~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~ 209 (327)
|+|..|+.=..+..| ..+ .+.+.++.+.+.|++.|.+.|.. |+-..=..-=-.+.++...+.
T Consensus 11 v~~a~vTPf~~dg~i---------D~~-~l~~li~~l~~~Gv~Gi~~~Gst--------GE~~~Lt~eEr~~~~~~~~~~ 72 (303)
T PRK03620 11 LLSFPVTPFDADGSF---------DEA-AYREHLEWLAPYGAAALFAAGGT--------GEFFSLTPDEYSQVVRAAVET 72 (303)
T ss_pred eEEeeeCCCCCCCCc---------CHH-HHHHHHHHHHHcCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHH
Confidence 666666643322222 444 58889999999999999999952 222221112234456655554
Q ss_pred CC-CeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee--cCCCCC----CchHHHHHHHHHH
Q 020319 210 YP-DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV--SPSDMM----DGRVGAIRAALDA 282 (327)
Q Consensus 210 fP-dl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiV--APSDMM----DGRV~aIR~aLD~ 282 (327)
.. .+-||+=| |. .-++|++ .+-..+++|||.| .|--.. +|-+...++..+.
T Consensus 73 ~~~~~pvi~gv-----------------~~-~t~~~i~----~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 73 TAGRVPVIAGA-----------------GG-GTAQAIE----YAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKS 130 (303)
T ss_pred hCCCCcEEEec-----------------CC-CHHHHHH----HHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 43 35555411 11 1133444 5555578899853 333222 5677777777765
Q ss_pred CCCCCceeeehh
Q 020319 283 EGFQHVSIMSYT 294 (327)
Q Consensus 283 ~Gf~~v~IMSYS 294 (327)
. +++||=|-
T Consensus 131 ~---~lpi~lYn 139 (303)
T PRK03620 131 T---DLGVIVYN 139 (303)
T ss_pred C---CCCEEEEc
Confidence 4 67888885
No 138
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=58.73 E-value=28 Score=36.60 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=60.2
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcc
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHc 230 (327)
.+.++ .+++.++++.+.|+..|-| ||..|-. +|. -+-+-|+.||+++| ++-| .-|+||
T Consensus 151 ~~t~e-~~~~~a~~l~~~Gad~I~I--------kDtaGll--~P~-~~~~LV~~Lk~~~~~~ipI---------~~H~Hn 209 (499)
T PRK12330 151 IHTVE-GFVEQAKRLLDMGADSICI--------KDMAALL--KPQ-PAYDIVKGIKEACGEDTRI---------NLHCHS 209 (499)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEe--------CCCccCC--CHH-HHHHHHHHHHHhCCCCCeE---------EEEeCC
Confidence 45664 5888889999999987654 4544432 222 25567889999996 5443 347776
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec--CCCCCC--ch--HHHHHHHHHHCCC
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS--PSDMMD--GR--VGAIRAALDAEGF 285 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA--PSDMMD--GR--V~aIR~aLD~~Gf 285 (327)
-. |. + ..-++.-++||||+|= =+.|=- |. ...+=.+|...|+
T Consensus 210 t~----Gl----A-----~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~ 257 (499)
T PRK12330 210 TT----GV----T-----LVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGY 257 (499)
T ss_pred CC----Cc----H-----HHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCC
Confidence 32 20 1 1135666899999973 333311 11 2334456767777
No 139
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=58.24 E-value=16 Score=32.51 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCC---------Cc---HHHHHHHHHHHCCCeeEEeeecccCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN---------GL---VPRTIWLLKDRYPDLVIYTDVALDPYS 225 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~---------gl---V~rAIr~iK~~fPdl~VitDVcLc~YT 225 (327)
+|.+.+..+.++||++|-|=|+.+.. .+...|++. |- +.+.|++++++ .|-||-|+.+-. |
T Consensus 5 gi~~kLdyl~~lGv~~I~l~Pi~~~~----~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~--gi~VilD~V~NH-~ 77 (316)
T PF00128_consen 5 GIIDKLDYLKDLGVNAIWLSPIFESP----NGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKR--GIKVILDVVPNH-T 77 (316)
T ss_dssp HHHHTHHHHHHHTESEEEESS-EESS----SSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHT--TCEEEEEEETSE-E
T ss_pred HHHHhhHHHHHcCCCceecccccccc----cccccccceeeeccccccchhhhhhhhhhccccc--cceEEEeeeccc-c
Confidence 68899999999999999998874421 133333332 22 44555555555 799999998753 2
Q ss_pred CCCcce----------------eec--------------------CC--------------CccccHHHHHHHHHHHHHH
Q 020319 226 SDGHDG----------------IVR--------------------ED--------------GVIMNDETVHQLCKQAVSQ 255 (327)
Q Consensus 226 shGHcG----------------Il~--------------------~~--------------G~IdND~Tv~~Lak~Als~ 255 (327)
+.+|.. ... .+ -...|.++.+.+.+...-.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w 157 (316)
T PF00128_consen 78 SDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFW 157 (316)
T ss_dssp ETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccch
Confidence 222221 000 00 0134778888888877777
Q ss_pred HHcCCCee---cCCCCCCchHHHHHHHHHHCC
Q 020319 256 ARAGADVV---SPSDMMDGRVGAIRAALDAEG 284 (327)
Q Consensus 256 A~AGADiV---APSDMMDGRV~aIR~aLD~~G 284 (327)
.+.|+|-+ +-.-|-...+..+++.+.+..
T Consensus 158 ~~~giDGfR~D~~~~~~~~~~~~~~~~~~~~~ 189 (316)
T PF00128_consen 158 IEEGIDGFRLDAAKHIPKEFWKEFRDEVKEEK 189 (316)
T ss_dssp HHTTESEEEETTGGGSSHHHHHHHHHHHHHHH
T ss_pred hhceEeEEEEccccccchhhHHHHhhhhhhhc
Confidence 88888765 344455578888888888753
No 140
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=58.24 E-value=18 Score=33.92 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCeecCC-----C-CCCc--hHHHHHHHHHHCCCCCceeeehhhh
Q 020319 249 CKQAVSQARAGADVVSPS-----D-MMDG--RVGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 249 ak~Als~A~AGADiVAPS-----D-MMDG--RV~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
.+||+.-|+|||+.|||= | -.|| .|..|++.++..|+ ++-||+=|-|
T Consensus 114 ~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~-~tkILaAS~r 168 (220)
T PRK12653 114 AAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAP-QAKVLAASFK 168 (220)
T ss_pred HHHHHHHHhcCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCC-CcEEEEEecC
Confidence 458899999999999993 1 1232 47889999988777 7888876644
No 141
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=58.21 E-value=32 Score=33.23 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=35.5
Q ss_pred ceEecchhhHHHHHHHHHHcCCCeEEEe-ecCCCCCC-C----cccccCcC-CCCcHHHHHHHHHHH
Q 020319 150 CYRLGWRHGLVQEVAKARDVGVNSVVLF-PKVPDALK-S----PTGDEAYN-DNGLVPRTIWLLKDR 209 (327)
Q Consensus 150 v~r~sid~~l~~ev~~~~~lGI~sVlLF-gvi~~~~K-D----~~Gs~A~n-~~glV~rAIr~iK~~ 209 (327)
-|.++.+ +++++++++.+.|++.|+|= |.-|+ .+ + ...+.+++ +-..+.+.++.||+.
T Consensus 32 ~~~l~~e-eI~~~a~~~~~~G~~ei~l~~G~~p~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e 96 (322)
T TIGR03550 32 AALLSPE-EVLEILRKGAAAGCTEALFTFGEKPE-ERYPEAREWLAEMGYDSTLEYLRELCELALEE 96 (322)
T ss_pred cccCCHH-HHHHHHHHHHHCCCCEEEEecCCCcc-ccHHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 4567886 79999999999999987764 54332 11 0 11222332 123456666777755
No 142
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.19 E-value=18 Score=36.12 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccccCcCCCCcHH---HHHHHHHHHCCCeeEEeeec---ccCCCCCCccee
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLVP---RTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~-~KD~~Gs~A~n~~glV~---rAIr~iK~~fPdl~VitDVc---Lc~YTshGHcGI 232 (327)
.+.++.+++.|+..|.+|--+++. .|-..+ ...+-.+. ++|+..|+.- +-|..-++ =|||.
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~---~t~~e~l~~~~~~v~~Ak~~G--l~v~~~is~~fg~p~~------- 191 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNIN---CSIEESLVRYREVALAAKKHS--IPVRGYVSCVVGCPIE------- 191 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcC--CeEEEEEEeeecCCcc-------
Confidence 678889999999999998544331 121111 12223333 5566666553 33322222 25552
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH--CCC--CCceeeehhhhh
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA--EGF--QHVSIMSYTAKY 297 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~--~Gf--~~v~IMSYSAKy 297 (327)
|.+ +.+.|.+.+-...++|||.|.-.|++= -.|.+||+.++. -+| +|..=|+.+.-+
T Consensus 192 ----~r~----~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~l 260 (347)
T PLN02746 192 ----GPV----PPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANIL 260 (347)
T ss_pred ----CCC----CHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHH
Confidence 333 366667777777899999999999864 245566666542 122 444445554433
No 143
>PRK00865 glutamate racemase; Provisional
Probab=58.08 E-value=58 Score=30.60 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=61.6
Q ss_pred HHHHHHHHCCC--eeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC---------
Q 020319 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------- 270 (327)
Q Consensus 202 AIr~iK~~fPd--l~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------- 270 (327)
.++.|++.+|+ ++-++|..-.||- .-..++=.+++.+.+-.+.++|||.|.=..--+
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PYG------------~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr 87 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPYG------------EKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLR 87 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCCC------------CCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHH
Confidence 57888899984 8889999999993 334455555566666777789999884333322
Q ss_pred --------chHHHHHHHHHHCCCCCceeeehhhhhhccccc
Q 020319 271 --------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (327)
Q Consensus 271 --------GRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYG 303 (327)
|-..+++.+....+..+++||+=.+--.|.+|.
T Consensus 88 ~~~~iPvigi~~a~~~a~~~~~~~~igVLaT~~Ti~s~~y~ 128 (261)
T PRK00865 88 ERYDIPVVGIVPAIKPAAALTRNGRIGVLATPGTVKSAAYR 128 (261)
T ss_pred HhCCCCEEeeHHHHHHHHHhcCCCeEEEEECHHHhhchHHH
Confidence 233566666655567889999766655777764
No 144
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=58.07 E-value=6 Score=40.33 Aligned_cols=73 Identities=26% Similarity=0.312 Sum_probs=42.4
Q ss_pred CCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc-cCCCCCCcceeecCCCccccHHHHHHH--HHHHHHHHHcCCC
Q 020319 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL-DPYSSDGHDGIVREDGVIMNDETVHQL--CKQAVSQARAGAD 261 (327)
Q Consensus 185 KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL-c~YTshGHcGIl~~~G~IdND~Tv~~L--ak~Als~A~AGAD 261 (327)
-|.+|.....+-=-.-+||.+||++|||+.|=.-.+= |-.--|| .+- =|| .||.-| -+||-..++|||+
T Consensus 210 FDttgaaGd~Df~atL~AvE~Lr~~fP~m~IE~GMAgE~vLGMHG--~le-Ydg-----~~LAGL~PHqQa~l~~kAGan 281 (466)
T PF09505_consen 210 FDTTGAAGDGDFYATLKAVEALRKKFPNMYIEMGMAGEFVLGMHG--ELE-YDG-----VTLAGLWPHQQAPLAEKAGAN 281 (466)
T ss_pred ccccccCCChhHHHHHHHHHHHHHhCcceeEecccccceeeeccc--cee-ECC-----EeeeccCcccccchHHhcCcc
Confidence 4556665554444567899999999999988543321 0011111 111 122 222222 2477788899999
Q ss_pred eecC
Q 020319 262 VVSP 265 (327)
Q Consensus 262 iVAP 265 (327)
+..|
T Consensus 282 vFGP 285 (466)
T PF09505_consen 282 VFGP 285 (466)
T ss_pred eecc
Confidence 9888
No 145
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=57.97 E-value=1.3e+02 Score=28.12 Aligned_cols=97 Identities=24% Similarity=0.317 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
.-+.|+++++++|...|-+-..+. ..|+ .....+.+-|+.|++...++.+.. |+ +.|
T Consensus 71 ~K~~E~~~Av~~GAdEiDvv~n~g-~l~~-------g~~~~v~~ei~~i~~~~~g~~lKv--------------Il-E~~ 127 (211)
T TIGR00126 71 VKLYETKEAIKYGADEVDMVINIG-ALKD-------GNEEVVYDDIRAVVEACAGVLLKV--------------II-ETG 127 (211)
T ss_pred HHHHHHHHHHHcCCCEEEeecchH-hhhC-------CcHHHHHHHHHHHHHHcCCCeEEE--------------EE-ecC
Confidence 357888999999999987744333 2332 122456667788887643322221 33 456
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHH
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALD 281 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD------GRV~aIR~aLD 281 (327)
.+ +|+ .+.+.+-.-.++|||+|=-|.=-- +-|..+|+.+.
T Consensus 128 ~L-~~~---ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 128 LL-TDE---EIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CC-CHH---HHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc
Confidence 63 343 344555566789999997663222 56667777764
No 146
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=57.96 E-value=20 Score=34.18 Aligned_cols=58 Identities=33% Similarity=0.500 Sum_probs=36.7
Q ss_pred cCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHH
Q 020319 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQL 248 (327)
Q Consensus 169 lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~L 248 (327)
+|.+-|-| +.||.++ |+++..+...++...+..+|. .|-|++-+
T Consensus 152 ~g~~~iYL----------EaGSGa~---~~v~~~v~~~~~~~~~~~Liv------------------GGGIrs~e----- 195 (230)
T PF01884_consen 152 LGMPIIYL----------EAGSGAY---GPVPEEVIAAVKKLSDIPLIV------------------GGGIRSPE----- 195 (230)
T ss_dssp TT-SEEEE----------E--TTSS---S-HHHHHHHHHHHSSSSEEEE------------------ESS--SHH-----
T ss_pred hCCCEEEE----------EeCCCCC---CCccHHHHHHHHhcCCccEEE------------------eCCcCCHH-----
Confidence 56665554 2577777 788667777777777766553 46677654
Q ss_pred HHHHHHHHHcCCCeec
Q 020319 249 CKQAVSQARAGADVVS 264 (327)
Q Consensus 249 ak~Als~A~AGADiVA 264 (327)
||...++||||+|-
T Consensus 196 --~A~~~~~aGAD~IV 209 (230)
T PF01884_consen 196 --QAREMAEAGADTIV 209 (230)
T ss_dssp --HHHHHHCTTSSEEE
T ss_pred --HHHHHHHCCCCEEE
Confidence 67788999999984
No 147
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=57.94 E-value=9.1 Score=37.08 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHH
Q 020319 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280 (327)
Q Consensus 241 ND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aL 280 (327)
+++..+.+.+.|..+.+||||.|=...+=.--...|.+.|
T Consensus 155 t~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l 194 (263)
T TIGR00222 155 DEEAAKKLLEDALALEEAGAQLLVLECVPVELAAKITEAL 194 (263)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHhC
Confidence 5667889999999999999999876655533344444444
No 148
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=57.91 E-value=25 Score=33.26 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=53.0
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcc
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHc 230 (327)
+|...+ .+++.++.+.+.|+..|.| +|..|. ..|.. +.+-++.+|+++|++- ..-|+|+
T Consensus 146 ~~~~~~-~~~~~~~~~~~~g~~~i~l--------~DT~G~--~~P~~-v~~lv~~l~~~~~~~~---------l~~H~Hn 204 (273)
T cd07941 146 YKANPE-YALATLKAAAEAGADWLVL--------CDTNGG--TLPHE-IAEIVKEVRERLPGVP---------LGIHAHN 204 (273)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCEEEE--------ecCCCC--CCHHH-HHHHHHHHHHhCCCCe---------eEEEecC
Confidence 355664 5788889999999987543 344553 23333 6778899999999732 3448886
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
-. | .=..-++.-.+||||+|--|
T Consensus 205 d~----G---------la~An~laA~~aGa~~id~s 227 (273)
T cd07941 205 DS----G---------LAVANSLAAVEAGATQVQGT 227 (273)
T ss_pred CC----C---------cHHHHHHHHHHcCCCEEEEe
Confidence 43 2 11123555568999998543
No 149
>PRK05926 hypothetical protein; Provisional
Probab=57.48 E-value=19 Score=35.98 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=41.2
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEE
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi 216 (327)
+.-|.++.+ ++++.++++ +.|++.|.|-+=..++ + +-.-+.+.++.||++||++-+-
T Consensus 94 ~~~~~ls~e-eI~~~a~~a-~~G~~ei~iv~G~~p~-~---------~~e~~~e~i~~Ik~~~p~i~i~ 150 (370)
T PRK05926 94 PKGWFYTPD-QLVQSIKEN-PSPITETHIVAGCFPS-C---------NLAYYEELFSKIKQNFPDLHIK 150 (370)
T ss_pred cccccCCHH-HHHHHHHHH-hcCCCEEEEEeCcCCC-C---------CHHHHHHHHHHHHHhCCCeeEE
Confidence 455778886 799999999 7999999886421211 1 1134678899999999998654
No 150
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=57.34 E-value=11 Score=36.35 Aligned_cols=105 Identities=21% Similarity=0.314 Sum_probs=62.6
Q ss_pred cCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHcCCCeecC--CCC
Q 020319 193 YNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARAGADVVSP--SDM 268 (327)
Q Consensus 193 ~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGI--l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAP--SDM 268 (327)
+|-++.+.+|.++.|. +++..|+-=+ |-|..|-.-+ |..+| |.--.|+=--..||+.-|+|||++||| +-|
T Consensus 73 ~d~e~mi~eA~~L~~~-~~~~~i~IKI---P~T~eGl~Ai~~L~~eG-I~~NvTLiFS~~QAl~aa~aga~~iSpFvgRi 147 (239)
T COG0176 73 FDAEAMIEEARRLAKL-IDNVGIVIKI---PATWEGLKAIKALEAEG-IKTNVTLIFSAAQALLAAEAGATYISPFVGRI 147 (239)
T ss_pred ccHHHHHHHHHHHHHh-cCcCCeEEEe---CCCHHHHHHHHHHHHCC-CeeeEEEEecHHHHHHHHHhCCeEEEeecchH
Confidence 4445566666554443 4444222222 3344442221 12234 333345555566899999999999999 344
Q ss_pred CC------chHHHHHHHHHHCCCCCceeeehhhhhhcccc
Q 020319 269 MD------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (327)
Q Consensus 269 MD------GRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfY 302 (327)
.| +-|..+|++++..+.....|+.=|++|.-..|
T Consensus 148 ~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas~~~~~~~~ 187 (239)
T COG0176 148 DDWGIDGMLGIAEAREIYDYYKQHGAKTLVASARFPNHVY 187 (239)
T ss_pred HhhccCchHHHHHHHHHHHHhccccceEEEecCccHHHHH
Confidence 43 35888999999998875666666777765444
No 151
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.31 E-value=1.3e+02 Score=28.68 Aligned_cols=107 Identities=11% Similarity=0.125 Sum_probs=64.6
Q ss_pred cchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCCccee
Q 020319 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 154 sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshGHcGI 232 (327)
..+ .+.+.++.+++.|+..|.+.|.. |+..+=..-=-.+.++...+.. .++-||+=|+
T Consensus 19 D~~-~l~~l~~~l~~~Gv~gi~v~Gst--------GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~------------ 77 (289)
T cd00951 19 DED-AYRAHVEWLLSYGAAALFAAGGT--------GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG------------ 77 (289)
T ss_pred CHH-HHHHHHHHHHHcCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC------------
Confidence 444 58888999999999999999952 3322222222344555555544 3455654221
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCee--cCCCCC----CchHHHHHHHHHHCCCCCceeeehh
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVV--SPSDMM----DGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiV--APSDMM----DGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
. .-+++++ .+-...++|||.| .|.-+. +|-+...++..+.. +++||=|-
T Consensus 78 -----~-~t~~~i~----~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~---~~pi~lYn 132 (289)
T cd00951 78 -----Y-GTATAIA----YAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST---DLGVIVYN 132 (289)
T ss_pred -----C-CHHHHHH----HHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEEe
Confidence 1 1134444 5555688899964 233232 57777778777753 68999995
No 152
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=57.29 E-value=1.8e+02 Score=28.20 Aligned_cols=130 Identities=19% Similarity=0.259 Sum_probs=79.9
Q ss_pred CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec
Q 020319 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (327)
Q Consensus 141 ~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc 220 (327)
.++|.-+..+.+ +.. ++.+.++.+.++||+.|++-.=-|+ .-|..+.- +.--...|+.||+.+.+. .-.=++
T Consensus 78 ~~~i~Hltc~d~-n~~-~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~~~~----~~~s~dLv~lik~~~~~~-f~i~~A 149 (291)
T COG0685 78 IEPIPHLTCRDR-NRI-EIISILKGAAALGIRNILALRGDPP-AGDKPGGK----DLYSVDLVELIKKMRGGI-FDIGVA 149 (291)
T ss_pred CccceeecccCC-CHH-HHHHHHHHHHHhCCceEEEecCCCC-CCCCCCcc----ccCHHHHHHHHHHhcCCe-EEEEEE
Confidence 457777777777 654 6999999999999999998643222 12222221 445667999999887763 222235
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeee
Q 020319 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 221 Lc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IMS 292 (327)
+.|+ ||.- .++. ++-+..|. .-.+||||.+=--=+-| -++..+++.+..+|- +++|..
T Consensus 150 ~~Pe---~h~~--s~~~----~~d~~~lk----rKv~aGAd~~iTQ~~fd~e~~~~~~~~~~~~g~-~~pI~~ 208 (291)
T COG0685 150 AYPE---GHPE--SKDV----KEDIKRLK----RKVDAGADFFITQFFFDVEAFERFAERVRAAGI-DIPIIP 208 (291)
T ss_pred eCCC---CCcc--chhh----HHHHHHHH----HHHhcchHHHHHHHccCHHHHHHHHHHHHhcCC-CCCeee
Confidence 5565 3322 1111 22222332 22349999876666666 467889999998886 554443
No 153
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=57.22 E-value=8.9 Score=37.86 Aligned_cols=72 Identities=24% Similarity=0.430 Sum_probs=45.4
Q ss_pred CcccCCCCCce-EecchhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEee
Q 020319 141 DTPIGAMPGCY-RLGWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (327)
Q Consensus 141 ~~~I~SMPGv~-r~sid~~l~~ev~~-~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitD 218 (327)
+...=.|||=- ++-=|.+-++.+.. -.++||+++=.+ ++++ . -=.+-.++|++.-||++|+|
T Consensus 98 ~~~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~--~~E~-e------------qp~~i~~Ll~~~~PDIlViT- 161 (287)
T PF05582_consen 98 KEEYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIH--VPEK-E------------QPEKIYRLLEEYRPDILVIT- 161 (287)
T ss_pred cccccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEE--echH-H------------hhHHHHHHHHHcCCCEEEEe-
Confidence 45666789853 33223334444444 346999987665 3432 1 12345567777779999998
Q ss_pred ecccCCCCCCcceeecCCC
Q 020319 219 VALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 219 VcLc~YTshGHcGIl~~~G 237 (327)
||||++.+.+
T Consensus 162 ---------GHD~~~K~~~ 171 (287)
T PF05582_consen 162 ---------GHDGYLKNKK 171 (287)
T ss_pred ---------CchhhhcCCC
Confidence 9999996543
No 154
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=57.15 E-value=23 Score=32.95 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=53.3
Q ss_pred CCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCC
Q 020319 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (327)
Q Consensus 146 SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YT 225 (327)
+.+...|++.+ .+.+.++++.+.|+..|-| +|..|.. .|+ -+.+-++.+|+++| + +..
T Consensus 129 ~~~~~~~~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~~--~P~-~v~~lv~~l~~~~~-~---------~l~ 186 (259)
T cd07939 129 GAEDASRADPD-FLIEFAEVAQEAGADRLRF--------ADTVGIL--DPF-TTYELIRRLRAATD-L---------PLE 186 (259)
T ss_pred eeccCCCCCHH-HHHHHHHHHHHCCCCEEEe--------CCCCCCC--CHH-HHHHHHHHHHHhcC-C---------eEE
Confidence 33455566764 6888888888888876543 3445532 232 25667788888876 2 335
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 226 shGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
-|+|+-. | -++ .-++.-.++|||+|=-|=.
T Consensus 187 ~H~Hn~~----G----la~-----An~laAi~aG~~~vd~s~~ 216 (259)
T cd07939 187 FHAHNDL----G----LAT-----ANTLAAVRAGATHVSVTVN 216 (259)
T ss_pred EEecCCC----C----hHH-----HHHHHHHHhCCCEEEEecc
Confidence 5888632 2 011 2345556899998855544
No 155
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=57.14 E-value=28 Score=36.59 Aligned_cols=75 Identities=31% Similarity=0.444 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
.+.++-+++.|++-|+| +.+ .|..-| -..-|+.||++||++-||+ |.|
T Consensus 253 K~rl~ll~~aGvdvviL----DSS----qGnS~~-----qiemik~iK~~yP~l~Via-------------------GNV 300 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVIL----DSS----QGNSIY-----QLEMIKYIKETYPDLQIIA-------------------GNV 300 (503)
T ss_pred hHHHHHhhhcCCcEEEE----ecC----CCcchh-----HHHHHHHHHhhCCCceeec-------------------cce
Confidence 56677889999999887 222 444443 3468999999999999986 222
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVG 274 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~ 274 (327)
.| .+||-.+-.||||.+= =.|--|-|=
T Consensus 301 ---VT----~~qa~nLI~aGaDgLr-VGMGsGSiC 327 (503)
T KOG2550|consen 301 ---VT----KEQAANLIAAGADGLR-VGMGSGSIC 327 (503)
T ss_pred ---ee----HHHHHHHHHccCceeE-eccccCcee
Confidence 12 3488889999999863 245445443
No 156
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=57.04 E-value=18 Score=34.76 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=40.6
Q ss_pred ceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeE
Q 020319 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (327)
Q Consensus 150 v~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~V 215 (327)
-|+++.+ +++++++++.+.|++.|.|-|-..+ .-+...+.+.++.||+.+|++-+
T Consensus 69 ~~~ls~e-ei~~~~~~~~~~G~~~i~l~gG~~p----------~~~~~~~~~li~~Ik~~~~~i~~ 123 (340)
T TIGR03699 69 GYVLSVE-EILQKIEELVAYGGTQILLQGGVNP----------DLGLDYYEDLFRAIKARFPHIHI 123 (340)
T ss_pred ccCCCHH-HHHHHHHHHHHcCCcEEEEecCCCC----------CCCHHHHHHHHHHHHHHCCCcCC
Confidence 4578886 7999999999999999988643111 11234567899999999988754
No 157
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=56.93 E-value=95 Score=29.71 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcceeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
.+.+.++.+++.|+..+.+.|.. |+...=..-=-.+.++...+... .+-|++=|
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~Gst--------GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv----------------- 76 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTS--------GEPGSLTLEERKQAIENAIDQIAGRIPFAPGT----------------- 76 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCCCCcEEEEC-----------------
Confidence 58888999999999999999852 32222111112334444333332 34444311
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCCCceeeehh
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVA--------PSDMMDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
|.-.-+++++ .|-..+++|||.|. ||+ ||-+...+...+... +++||-|-
T Consensus 77 ~~~~t~~ai~----~a~~A~~~Gad~v~v~pP~y~~~~~--~~l~~~f~~ia~a~~--~lpv~iYn 134 (294)
T TIGR02313 77 GALNHDETLE----LTKFAEEAGADAAMVIVPYYNKPNQ--EALYDHFAEVADAVP--DFPIIIYN 134 (294)
T ss_pred CcchHHHHHH----HHHHHHHcCCCEEEEcCccCCCCCH--HHHHHHHHHHHHhcc--CCCEEEEe
Confidence 1112344444 33344788999652 455 788888888888741 67899884
No 158
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.63 E-value=40 Score=32.95 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=50.7
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcce
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcG 231 (327)
+..+.-+-++++.++++.|..-|+|=. +++ .-+.++++.+|+..|++.+.+
T Consensus 198 ~I~VEv~tleea~eA~~~GaD~I~LDn--------------~~~-e~l~~av~~~~~~~~~i~leA-------------- 248 (288)
T PRK07428 198 TIEVETETLEQVQEALEYGADIIMLDN--------------MPV-DLMQQAVQLIRQQNPRVKIEA-------------- 248 (288)
T ss_pred EEEEECCCHHHHHHHHHcCCCEEEECC--------------CCH-HHHHHHHHHHHhcCCCeEEEE--------------
Confidence 344432358899999999998877721 112 346789999988777655443
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
-|-| |-+++. .+|++|+|+|+=|.+
T Consensus 249 ----sGGI-t~~ni~-------~ya~tGvD~Isvgsl 273 (288)
T PRK07428 249 ----SGNI-TLETIR-------AVAETGVDYISSSAP 273 (288)
T ss_pred ----ECCC-CHHHHH-------HHHHcCCCEEEEchh
Confidence 2445 455544 568999999987653
No 159
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.59 E-value=22 Score=33.16 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=50.2
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcc
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHc 230 (327)
++++.+ .+++.++.+.+.|+..|-| +|..|. ..|+ -+.+-++.||+++|.+ +..-|+|+
T Consensus 136 ~~~~~~-~~~~~~~~~~~~G~d~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~~---------~l~~H~Hn 194 (263)
T cd07943 136 HMASPE-ELAEQAKLMESYGADCVYV--------TDSAGA--MLPD-DVRERVRALREALDPT---------PVGFHGHN 194 (263)
T ss_pred cCCCHH-HHHHHHHHHHHcCCCEEEE--------cCCCCC--cCHH-HHHHHHHHHHHhCCCc---------eEEEEecC
Confidence 566664 6888888888999886543 445553 2333 3677888999988751 23458886
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAP 265 (327)
-. | .=..-++.-.+||||+|==
T Consensus 195 ~~----G---------lA~AN~laAi~aGa~~vd~ 216 (263)
T cd07943 195 NL----G---------LAVANSLAAVEAGATRIDG 216 (263)
T ss_pred Cc----c---------hHHHHHHHHHHhCCCEEEe
Confidence 32 2 0111344455789998743
No 160
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=56.39 E-value=78 Score=30.00 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=83.2
Q ss_pred CCCCceEecchhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec----
Q 020319 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA---- 220 (327)
Q Consensus 146 SMPGv~r~sid~~l~~ev~~~~~lGI~sVlL-Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc---- 220 (327)
..||+ +++.+ ..++.++.|.+.||..|=+ ||.. ...+..|..++.+.-.+.+..+..| .-..+.++++.-
T Consensus 11 q~~~~-~f~~~-~~~~ia~~L~~~GVd~IEvG~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~ 85 (266)
T cd07944 11 YVNNW-DFGDE-FVKAIYRALAAAGIDYVEIGYRSS--PEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDI 85 (266)
T ss_pred cccCc-cCCHH-HHHHHHHHHHHCCCCEEEeecCCC--CccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCH
Confidence 45666 67775 6888888999999999877 6642 2245667777877655555555443 124577777665
Q ss_pred --ccCCCCCCcceee--c----------------CCC-cc-----c-cHHHHHHHHHHHHHHHHcCCCeecCCCCCC---
Q 020319 221 --LDPYSSDGHDGIV--R----------------EDG-VI-----M-NDETVHQLCKQAVSQARAGADVVSPSDMMD--- 270 (327)
Q Consensus 221 --Lc~YTshGHcGIl--~----------------~~G-~I-----d-ND~Tv~~Lak~Als~A~AGADiVAPSDMMD--- 270 (327)
+.+...+|.+.|- . +.| .| + -..+.+.+.+.+-...++|||.|.=.|+.=
T Consensus 86 ~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~ 165 (266)
T cd07944 86 DLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMY 165 (266)
T ss_pred HHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCC
Confidence 5677778877732 1 112 00 0 113455566666666778999988887653
Q ss_pred -----chHHHHHHHHH
Q 020319 271 -----GRVGAIRAALD 281 (327)
Q Consensus 271 -----GRV~aIR~aLD 281 (327)
-.|.+||+.++
T Consensus 166 P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 166 PEDIKRIISLLRSNLD 181 (266)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 35667777765
No 161
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=55.74 E-value=10 Score=37.47 Aligned_cols=68 Identities=22% Similarity=0.435 Sum_probs=42.9
Q ss_pred CCCCCce-EecchhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeeccc
Q 020319 145 GAMPGCY-RLGWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222 (327)
Q Consensus 145 ~SMPGv~-r~sid~~l~~ev~~-~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc 222 (327)
-.|||=- ++-=|.+-++.+.. -.++||+++=.+ ++++ + --.+-+++|++.-||++|+|
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~--~~E~-e------------qp~~i~~Ll~~~~PDIlViT----- 160 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIH--CKEK-E------------MPEKVLDLIEEVRPDILVIT----- 160 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEE--ecch-h------------chHHHHHHHHHhCCCEEEEe-----
Confidence 3778853 33223334444444 346899986654 3432 1 22456778888889999998
Q ss_pred CCCCCCcceeecCCC
Q 020319 223 PYSSDGHDGIVREDG 237 (327)
Q Consensus 223 ~YTshGHcGIl~~~G 237 (327)
||||++.+.|
T Consensus 161 -----GHD~~~K~~~ 170 (283)
T TIGR02855 161 -----GHDAYSKNKG 170 (283)
T ss_pred -----CchhhhcCCC
Confidence 9999996434
No 162
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=55.47 E-value=45 Score=29.10 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL 221 (327)
...+.++.+.+. ++.+-+ |. +- ..++| .+.|+.+|+.+|++.|+.|.-+
T Consensus 14 ~~~~~~~~l~~~-i~~iei-g~-~~----------~~~~g--~~~i~~i~~~~~~~~i~~~~~v 62 (202)
T cd04726 14 EALELAKKVPDG-VDIIEA-GT-PL----------IKSEG--MEAVRALREAFPDKIIVADLKT 62 (202)
T ss_pred HHHHHHHHhhhc-CCEEEc-CC-HH----------HHHhC--HHHHHHHHHHCCCCEEEEEEEe
Confidence 466777777776 777655 31 11 11334 5789999999999988887543
No 163
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=55.45 E-value=87 Score=30.49 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=63.9
Q ss_pred eeEEEeeCCCCcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCc-----ccccCcCCCCcHHHHHHH
Q 020319 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSP-----TGDEAYNDNGLVPRTIWL 205 (327)
Q Consensus 131 ~PlFV~eg~~~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~-----~Gs~A~n~~glV~rAIr~ 205 (327)
.||+|.-.. . +. ++.+.++.+.+.|+..|.++..+....-|. .....+.-....+.+++.
T Consensus 164 iPv~vKl~p---------~-----~~-~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~ 228 (325)
T cd04739 164 IPVAVKLSP---------F-----FS-ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRW 228 (325)
T ss_pred CCEEEEcCC---------C-----cc-CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHH
Confidence 599998532 1 12 367777888899999999998643211111 001112222334445544
Q ss_pred HHHHCC--CeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc------hHHH
Q 020319 206 LKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG------RVGA 275 (327)
Q Consensus 206 iK~~fP--dl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS--DMMDG------RV~a 275 (327)
+++-.- ++-||. .|-|.|-+ .|+.+-.+|||.|.=. =|.+| -+..
T Consensus 229 v~~v~~~~~ipIig------------------~GGI~s~~-------Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 283 (325)
T cd04739 229 IAILSGRVKASLAA------------------SGGVHDAE-------DVVKYLLAGADVVMTTSALLRHGPDYIGTLLAG 283 (325)
T ss_pred HHHHHcccCCCEEE------------------ECCCCCHH-------HHHHHHHcCCCeeEEehhhhhcCchHHHHHHHH
Confidence 443321 332322 24444432 4555556899987533 23332 3455
Q ss_pred HHHHHHHCCCCCc
Q 020319 276 IRAALDAEGFQHV 288 (327)
Q Consensus 276 IR~aLD~~Gf~~v 288 (327)
|.+.|++.||.++
T Consensus 284 L~~~l~~~g~~~i 296 (325)
T cd04739 284 LEAWMEEHGYESV 296 (325)
T ss_pred HHHHHHHcCCCCH
Confidence 6777888999653
No 164
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=55.35 E-value=30 Score=34.73 Aligned_cols=139 Identities=19% Similarity=0.329 Sum_probs=86.8
Q ss_pred CCCCcccCCCCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEe-----eCCCCcccCCCCC-----ceEecch--hhH
Q 020319 92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIH-----EGEEDTPIGAMPG-----CYRLGWR--HGL 159 (327)
Q Consensus 92 ~g~p~~~~~~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~-----eg~~~~~I~SMPG-----v~r~sid--~~l 159 (327)
.|.=+|-|=+|.- - +=.++|+.+-|.-++- =.|+.-=+. -|+=.+...|=|. -||+... .+.
T Consensus 154 AGADiVAPSdMMD----G-rV~aIR~aLd~~g~~~-v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eA 227 (320)
T cd04823 154 AGADIVAPSDMMD----G-RIGAIREALDAEGFTN-VSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREA 227 (320)
T ss_pred hCCCEEEcccchh----h-HHHHHHHHHHHCCCCC-CceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHH
Confidence 4555666666641 1 2257888887776632 233332111 0111233333332 2343221 247
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec---CC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR---ED 236 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~---~~ 236 (327)
+.|++.-++-|-.-+|+=|- .+.-.-|+.+|++| ++-|.+ |.-.|--..+. +.
T Consensus 228 lre~~~Di~EGAD~lMVKPa-----------------l~YLDIi~~~k~~~-~lPvaa------YqVSGEYaMikaAa~~ 283 (320)
T cd04823 228 LREVALDIAEGADMVMVKPG-----------------MPYLDIIRRVKDEF-GVPTFA------YQVSGEYAMLKAAAQN 283 (320)
T ss_pred HHHHHhhHHhCCCEEEEcCC-----------------chHHHHHHHHHHhc-CCCEEE------EEccHHHHHHHHHHHc
Confidence 77888888899888887543 45567899999999 577766 99999888874 46
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
|.+|.++. +.+.-++..+||||+|
T Consensus 284 G~~d~~~~---~~Esl~~ikRAGAd~I 307 (320)
T cd04823 284 GWLDEDKV---MLESLLAFKRAGADGI 307 (320)
T ss_pred CCCcHHHH---HHHHHHHHHhcCCCEE
Confidence 88886543 3456788999999986
No 165
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=54.91 E-value=85 Score=30.80 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCc-HHHHHHHHHHHCCCeeEEe
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL-VPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~gl-V~rAIr~iK~~fPdl~Vit 217 (327)
.+++.++.+.+.|+..|.+.|.... .+--.|..-. .-++ --+.|+.+|+.+|++-||.
T Consensus 142 ~~~~~~~~l~~~G~~~itvHgRt~~-~qg~sg~~~~-~~~~~~~~~i~~vk~~~~~ipVi~ 200 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQNFIVHARKAW-LSGLSPKENR-EIPPLRYERVYQLKKDFPHLTIEI 200 (318)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchh-hcCCCccccc-cCCchhHHHHHHHHHhCCCCcEEE
Confidence 5788889999999999999997421 1111111100 0112 2357899999988876664
No 166
>PLN02361 alpha-amylase
Probab=54.06 E-value=54 Score=33.41 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCC---------C---cHHHHHHHHHHHCCCeeEEeeecccC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN---------G---LVPRTIWLLKDRYPDLVIYTDVALDP 223 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~---------g---lV~rAIr~iK~~fPdl~VitDVcLc~ 223 (327)
.|.+++..+.++||++|-|-|+.. . .. ...|++. | -+.+.|++++++ .|-||.|+-+-.
T Consensus 30 ~i~~kl~~l~~lG~t~iwl~P~~~-~-~~---~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~--gi~vi~D~V~NH 100 (401)
T PLN02361 30 NLEGKVPDLAKSGFTSAWLPPPSQ-S-LA---PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY--NVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCc-C-CC---CCCCCcccccccCcccCCHHHHHHHHHHHHHc--CCEEEEEEcccc
Confidence 699999999999999999988532 2 12 2334333 2 255666666665 699999998864
No 167
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=54.02 E-value=17 Score=34.15 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCeecCC-----C-CCCc--hHHHHHHHHHHCCCCCceeeehhhh
Q 020319 248 LCKQAVSQARAGADVVSPS-----D-MMDG--RVGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 248 Lak~Als~A~AGADiVAPS-----D-MMDG--RV~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
-..||+.-|+|||+.|||= | =.|| .|..|++.++..|+ ++-||+=|-|
T Consensus 113 s~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~-~tkILaAS~r 168 (220)
T PRK12655 113 SAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAP-ESMVLAASFK 168 (220)
T ss_pred CHHHHHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCC-CcEEEEEecC
Confidence 3559999999999999992 1 1133 36778888988888 6788876644
No 168
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=53.41 E-value=16 Score=38.69 Aligned_cols=39 Identities=31% Similarity=0.742 Sum_probs=28.3
Q ss_pred CCCCCchHHHH-----------------HHHHHHCCCCCceeeehhhhhhccccchhHHHhhc
Q 020319 266 SDMMDGRVGAI-----------------RAALDAEGFQHVSIMSYTAKYASSFYGPFREALDS 311 (327)
Q Consensus 266 SDMMDGRV~aI-----------------R~aLD~~Gf~~v~IMSYSAKyASsfYGPFRdAa~S 311 (327)
-.||||||+.+ .+.|.++|...+-++ .-+|| ||.+++.+
T Consensus 58 pEil~GRVKTLHP~IhgGiLa~r~~~~h~~~l~~~~i~~IDlV------vvNLY-PF~~tv~~ 113 (513)
T PRK00881 58 PEILDGRVKTLHPKIHGGILARRDNPEHVAALEEHGIEPIDLV------VVNLY-PFEETVAK 113 (513)
T ss_pred chhcCCccccCCchhhhhhccCCCCHHHHHHHHHcCCCceeEE------EEeCc-ChHHHhcc
Confidence 46999999754 456888888655544 23577 99998865
No 169
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.81 E-value=1.2e+02 Score=28.71 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHH----HHCCCeeEEeeecccCCCCCCcceee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLK----DRYPDLVIYTDVALDPYSSDGHDGIV 233 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK----~~fPdl~VitDVcLc~YTshGHcGIl 233 (327)
+.++.++.+++.||+.+=+== .++ + ..++|+.|+ ++||+++|-+
T Consensus 28 ~a~~~~~al~~gGi~~iEiT~------~tp---------~-a~~~i~~l~~~~~~~~p~~~vGa---------------- 75 (222)
T PRK07114 28 VAKKVIKACYDGGARVFEFTN------RGD---------F-AHEVFAELVKYAAKELPGMILGV---------------- 75 (222)
T ss_pred HHHHHHHHHHHCCCCEEEEeC------CCC---------c-HHHHHHHHHHHHHhhCCCeEEee----------------
Confidence 588889999999999876511 111 1 124666664 6778887765
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchH-----------------HHHHHHHHHCCCCCceee---e
Q 020319 234 REDGVIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRV-----------------GAIRAALDAEGFQHVSIM---S 292 (327)
Q Consensus 234 ~~~G~IdND~Tv~~Lak~Als~A~AGADi-VAPSDMMDGRV-----------------~aIR~aLD~~Gf~~v~IM---S 292 (327)
|.|.|-++++ ...+|||+. |+|. +=..-+ ..|-+++ +.|++-|=+. +
T Consensus 76 ---GTVl~~e~a~-------~a~~aGA~FiVsP~-~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~-~~Ga~~vKlFPA~~ 143 (222)
T PRK07114 76 ---GSIVDAATAA-------LYIQLGANFIVTPL-FNPDIAKVCNRRKVPYSPGCGSLSEIGYAE-ELGCEIVKLFPGSV 143 (222)
T ss_pred ---EeCcCHHHHH-------HHHHcCCCEEECCC-CCHHHHHHHHHcCCCEeCCCCCHHHHHHHH-HCCCCEEEECcccc
Confidence 7888877665 356899996 4553 333322 3344555 5677544333 3
Q ss_pred hhhhhhccccchhH
Q 020319 293 YTAKYASSFYGPFR 306 (327)
Q Consensus 293 YSAKyASsfYGPFR 306 (327)
+..+|-.++=|||-
T Consensus 144 ~G~~~ikal~~p~p 157 (222)
T PRK07114 144 YGPGFVKAIKGPMP 157 (222)
T ss_pred cCHHHHHHHhccCC
Confidence 45677777777774
No 170
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=52.65 E-value=9 Score=36.79 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
.+-+.++++.++|...|=+ + .|+-... +.--++.|+.+|+. .+.|++.|- .++.
T Consensus 85 ~~~~yl~~~k~lGf~~IEi----S------dGti~l~-~~~r~~~I~~~~~~--Gf~v~~EvG-------------~K~~ 138 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEI----S------DGTIDLP-EEERLRLIRKAKEE--GFKVLSEVG-------------KKDP 138 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE------------SSS----HHHHHHHHHHHCCT--TSEEEEEES--------------SSH
T ss_pred hHHHHHHHHHHcCCCEEEe----c------CCceeCC-HHHHHHHHHHHHHC--CCEEeeccc-------------CCCc
Confidence 4778889999999999876 1 2322221 12335566666654 378888765 3444
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGR 272 (327)
.-+-..|++.+.+++...-+||||.| |++||
T Consensus 139 ~~~~~~~~~~~i~~~~~dLeAGA~~V----iiEar 169 (244)
T PF02679_consen 139 ESDFSLDPEELIEQAKRDLEAGADKV----IIEAR 169 (244)
T ss_dssp HHHTT--CCHHHHHHHHHHHHTECEE----EE--T
T ss_pred hhcccCCHHHHHHHHHHHHHCCCCEE----EEeee
Confidence 44445668899999999999999999 66666
No 171
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=52.58 E-value=91 Score=29.60 Aligned_cols=102 Identities=22% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
.+|.-.++-+ -..+.++.+.+.|+..|-+|--+.+ -..+.++|+..|+.- +.|.. |+| |+.
T Consensus 82 ~~~~~~~p~~-~~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G--~~v~~--~i~-~~~ 142 (275)
T cd07937 82 LVGYRHYPDD-VVELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAG--KHVEG--AIC-YTG 142 (275)
T ss_pred ccCccCCCcH-HHHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCC--CeEEE--EEE-ecC
Confidence 3444444432 3577888999999999988753221 123455666666663 33333 332 111
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHH
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAAL 280 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG--------RV~aIR~aL 280 (327)
. +. .+.+.+.+.+-...++|||.|.=.|++=. .|.++|+.+
T Consensus 143 ~---------~~----~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 143 S---------PV----HTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred C---------CC----CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 1 11 14445555555667889999999998754 355666654
No 172
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.54 E-value=28 Score=33.19 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=53.5
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCccee
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGI 232 (327)
++.+ .+++.++.+.+.|+..|-| +|..|.. .|. -+.+-|+.||+++|++ +..-|+|+-.
T Consensus 146 ~~~~-~~~~~~~~~~~~Ga~~i~l--------~DT~G~~--~P~-~v~~lv~~l~~~~~~~---------~i~~H~Hnd~ 204 (274)
T cd07938 146 VPPE-RVAEVAERLLDLGCDEISL--------GDTIGVA--TPA-QVRRLLEAVLERFPDE---------KLALHFHDTR 204 (274)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCcc--CHH-HHHHHHHHHHHHCCCC---------eEEEEECCCC
Confidence 4554 6888899999999876544 4555542 233 3667889999999973 3455888632
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
=- -+ .-++.-.+||||+|--|=.
T Consensus 205 Gl---A~----------AN~laA~~aGa~~id~t~~ 227 (274)
T cd07938 205 GQ---AL----------ANILAALEAGVRRFDSSVG 227 (274)
T ss_pred Ch---HH----------HHHHHHHHhCCCEEEEecc
Confidence 20 11 1356668999998864443
No 173
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=52.45 E-value=40 Score=34.00 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec---
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR--- 234 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~--- 234 (327)
+.+.|++.-++.|-.-||+=|- .+.-.-|+.+|+.|+ |-+.+ |.-.|--..+.
T Consensus 234 EAlrE~~lD~~EGAD~lMVKPa-----------------l~YLDIi~~vk~~~~-lP~~A------YqVSGEYaMikAAa 289 (330)
T COG0113 234 EALREIELDIEEGADILMVKPA-----------------LPYLDIIRRVKEEFN-LPVAA------YQVSGEYAMIKAAA 289 (330)
T ss_pred HHHHHHHhhHhcCCcEEEEcCC-----------------chHHHHHHHHHHhcC-CCeEE------EecchHHHHHHHHH
Confidence 5788888888899888887543 456678999999997 65555 99999988885
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
++|.||-+..+ -+.=++.-+||||+|
T Consensus 290 ~nGwide~~~v---lEsL~~~kRAGAd~I 315 (330)
T COG0113 290 QNGWIDEEKVV---LESLTSIKRAGADLI 315 (330)
T ss_pred HcCCcchHHHH---HHHHHHHHhcCCCEE
Confidence 57999876443 345678999999986
No 174
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=52.38 E-value=1.9e+02 Score=26.57 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHH-HCCCeeEEeeecccC--CCCCCcceeecC
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKD-RYPDLVIYTDVALDP--YSSDGHDGIVRE 235 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~-~fPdl~VitDVcLc~--YTshGHcGIl~~ 235 (327)
..+.++.+.+.++..+++++. .. ..+..+++.+++ ..| +|+.|...++ ....+.+..+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~-~~--------------~~~~~~~~~~~~~giP--vV~~~~~~~~~~~~~~~~~~~V-- 106 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLV-DP--------------TAAQTVINKAKQKNIP--VIFFNREPEEEDIKSYDKAYYV-- 106 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecC-ch--------------hhHHHHHHHHHHCCCC--EEEeCCCCccccccccccccee--
Confidence 455677889999999999873 11 124567777775 345 5555543221 1111112223
Q ss_pred CCccccHHHHHHHHHHHHHHHHc-------CCC----e--e-cCCCCC--CchHHHHHHHHHHCCCC
Q 020319 236 DGVIMNDETVHQLCKQAVSQARA-------GAD----V--V-SPSDMM--DGRVGAIRAALDAEGFQ 286 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~A-------GAD----i--V-APSDMM--DGRV~aIR~aLD~~Gf~ 286 (327)
..||.+.-+.+++....+... |.+ + + .+.+.. .-|....|++|.++|..
T Consensus 107 --~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~~~~~R~~gf~~~l~~~~~~ 171 (303)
T cd01539 107 --GTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHPDAIARTKYSIETLNDAGIK 171 (303)
T ss_pred --eecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCchhhhhhhhHHHHHHhcCCC
Confidence 247777777777777665422 121 1 2 233333 34788899999999874
No 175
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=52.37 E-value=38 Score=33.97 Aligned_cols=139 Identities=20% Similarity=0.339 Sum_probs=87.6
Q ss_pred CCCCcccCCCCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEe-----eCCCCcccCCCCC-----ceEecch--hhH
Q 020319 92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIH-----EGEEDTPIGAMPG-----CYRLGWR--HGL 159 (327)
Q Consensus 92 ~g~p~~~~~~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~-----eg~~~~~I~SMPG-----v~r~sid--~~l 159 (327)
.|.=+|-|=+|.- - +-.++|+.+-|+-++- =.|+.-=+. -|+=.+...|=|. -||+... .+.
T Consensus 149 AGADiVAPSdMMD----G-rV~aIR~aLd~~g~~~-v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eA 222 (314)
T cd00384 149 AGADIVAPSDMMD----G-RVAAIREALDEAGFSD-VPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREA 222 (314)
T ss_pred cCCCeeecccccc----c-HHHHHHHHHHHCCCCC-CceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHH
Confidence 4555666656632 1 2257888888876632 233332111 0111233444442 2343221 247
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec---CC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR---ED 236 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~---~~ 236 (327)
+.|++.-++-|-.-||+=|- .+.-.-|+.+|++| ++-|.+ |.-.|--..+. ++
T Consensus 223 lre~~~D~~EGAD~lMVKPa-----------------l~YLDIi~~~k~~~-~~Pvaa------YqVSGEYaMikaAa~~ 278 (314)
T cd00384 223 LREVELDIEEGADILMVKPA-----------------LAYLDIIRDVRERF-DLPVAA------YNVSGEYAMIKAAAKN 278 (314)
T ss_pred HHHHHhhHHhCCCEEEEcCC-----------------chHHHHHHHHHHhc-CCCEEE------EEccHHHHHHHHHHHc
Confidence 88888888899888887443 45667899999999 676666 99999888874 47
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
|.+|-+.. +.+.-++..+||||+|
T Consensus 279 G~id~~~~---~~Esl~~~kRAGAd~I 302 (314)
T cd00384 279 GWIDEERV---VLESLTSIKRAGADLI 302 (314)
T ss_pred CCccHHHH---HHHHHHHHHhcCCCEE
Confidence 88886654 3356688999999986
No 176
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=52.33 E-value=23 Score=37.75 Aligned_cols=98 Identities=22% Similarity=0.296 Sum_probs=59.5
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCccee
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGI 232 (327)
++++ .+++.++++.+.|...|.| ||..|.. .|. -+.+-|+.||+++| + |..-|.||-.
T Consensus 146 ~~~~-~~~~~~~~~~~~Gad~I~i--------~Dt~G~~--~P~-~v~~lv~~lk~~~~-~---------pi~~H~Hnt~ 203 (582)
T TIGR01108 146 HTLE-TYLDLAEELLEMGVDSICI--------KDMAGIL--TPK-AAYELVSALKKRFG-L---------PVHLHSHATT 203 (582)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCCc--CHH-HHHHHHHHHHHhCC-C---------ceEEEecCCC
Confidence 5665 6888899999999987544 4555542 222 26678888898886 2 3456888632
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-CCch-----HHHHHHHHHHCCC
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM-MDGR-----VGAIRAALDAEGF 285 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM-MDGR-----V~aIR~aLD~~Gf 285 (327)
| .=..-++.-++||||+|=-|-- |=|| ...+=.+|...|+
T Consensus 204 ----G---------la~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~ 249 (582)
T TIGR01108 204 ----G---------MAEMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRGTGY 249 (582)
T ss_pred ----C---------cHHHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHhcCC
Confidence 2 0112456678999999843311 1222 2334456666777
No 177
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=52.27 E-value=34 Score=35.02 Aligned_cols=61 Identities=26% Similarity=0.492 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccc-----cCcC-----CCCcHHHHHHHHHHHCCCe-eEEeee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGD-----EAYN-----DNGLVPRTIWLLKDRYPDL-VIYTDV 219 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs-----~A~n-----~~glV~rAIr~iK~~fPdl-~VitDV 219 (327)
.+.+.+++|.++|.+.|+++++ |+--..+... +..| -|..+++.+..|++++|++ +++.|+
T Consensus 262 ~~~~~l~~Ly~lGARk~vV~nl-pPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~ 333 (408)
T PRK15381 262 QQIDDIEKIISGGVNNVLVMGI-PDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYET 333 (408)
T ss_pred HHHHHHHHHHHcCCcEEEEeCC-CCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEh
Confidence 4677889999999999999985 4432333221 1111 3557888899999999985 445553
No 178
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=52.13 E-value=13 Score=37.82 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCCCceeee
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV--APSDMMD-GRV~aIR~aLD~~Gf~~v~IMS 292 (327)
.-|-++|++ |-..+++|||||| |=-||=| --++.|++.|++.|. ++++++
T Consensus 27 t~Dv~atv~----QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~-~iPlVA 79 (359)
T PF04551_consen 27 TRDVEATVA----QIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGS-PIPLVA 79 (359)
T ss_dssp TT-HHHHHH----HHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT--SS-EEE
T ss_pred cccHHHHHH----HHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCC-CCCeee
Confidence 345566665 7788999999997 3333433 457899999999998 589886
No 179
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=52.02 E-value=1e+02 Score=28.72 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
++.+.++.+.+.|+..|-|----|.. + .+..-.+....+.+.++.+|+.+ ++-|+.-+..
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~-~--~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~---------------- 171 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNV-G--GGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSP---------------- 171 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCC-C--CCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCC----------------
Confidence 57778888888899999884222432 1 12223334456778899999886 5555554442
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
.++ .+.+.++|-...++|||.|.-+
T Consensus 172 ~~~----~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 172 YFD----LEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CCC----HHHHHHHHHHHHHcCCCEEEEE
Confidence 112 2234445555678999999854
No 180
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=51.56 E-value=16 Score=32.55 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCeeEEe---eecc-cCCCCCCcceeecCCCccccHHH
Q 020319 202 TIWLLKDRYPDLVIYT---DVAL-DPYSSDGHDGIVREDGVIMNDET 244 (327)
Q Consensus 202 AIr~iK~~fPdl~Vit---DVcL-c~YTshGHcGIl~~~G~IdND~T 244 (327)
-++.|| .+|++.+.+ |||. |||.+|+||| + ++.+++|++
T Consensus 32 I~~rL~-~ge~i~lV~g~DDIC~~cp~~~~~~C~--~-e~~~~r~r~ 74 (135)
T COG3543 32 IAERLK-AGEDIKLVDGPDDICVSCPCKIDNHCG--D-ESSVERDRI 74 (135)
T ss_pred HHHHhh-cCCCeEEEecccchhhcCcCCCCCccc--c-chhHHHHHH
Confidence 334444 468866654 7886 8999999999 3 356666654
No 181
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=50.88 E-value=1.8e+02 Score=25.78 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
..+.++.+.+.++.++++++. ... .....++.+++..| +|..|-. +..+.++.-+ .
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~-~~~--------------~~~~~l~~~~~~ip--vV~~~~~---~~~~~~~~~V----~ 99 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPI-DPK--------------AVIPALNKAAAGIK--LITTDSD---APDSGRYVYI----G 99 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecC-Chh--------------HhHHHHHHHhcCCC--EEEecCC---CCccceeEEE----c
Confidence 455666777788888888764 110 01234455544444 3433432 2223344334 2
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeec---CCCC--CCchHHHHHHHHHHCCC
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVS---PSDM--MDGRVGAIRAALDAEGF 285 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVA---PSDM--MDGRV~aIR~aLD~~Gf 285 (327)
.||.+.-..+++..+..-..|.+++. +... ..-|...++++|.++|.
T Consensus 100 ~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~ 151 (271)
T cd06314 100 TDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKI 151 (271)
T ss_pred cChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCc
Confidence 35655555555444433223666543 2221 23577788888887765
No 182
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=50.42 E-value=18 Score=39.10 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=38.2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCCCceeeeh
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMSY 293 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV--APSDMMD-GRV~aIR~aLD~~Gf~~v~IMSY 293 (327)
.-|-++||+ |...+++|||||| +=-+|=| --++.||+.|.+.|+ ++++++=
T Consensus 41 T~D~~atv~----Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~-~iPLVAD 94 (606)
T PRK00694 41 TTDVDGTVR----QICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGI-SIPLVAD 94 (606)
T ss_pred cccHHHHHH----HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCC-CCCEEee
Confidence 445566666 7888999999998 3333333 347899999999999 6999863
No 183
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=50.10 E-value=35 Score=32.29 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=46.0
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcce
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcG 231 (327)
|++.+ .+++.++++.+.|+..|-| +|..|. .+|+ -+.+-++.||+++++ |+ +..-|+|+-
T Consensus 134 ~~~~~-~~~~~~~~~~~~g~~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~-----~~---~i~~H~Hn~ 193 (266)
T cd07944 134 GYSDE-ELLELLELVNEIKPDVFYI--------VDSFGS--MYPE-DIKRIISLLRSNLDK-----DI---KLGFHAHNN 193 (266)
T ss_pred CCCHH-HHHHHHHHHHhCCCCEEEE--------ecCCCC--CCHH-HHHHHHHHHHHhcCC-----Cc---eEEEEeCCC
Confidence 34443 4666666666666665433 223332 2222 145566666666653 11 234477753
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGR 272 (327)
. | .=..-++.-.+|||++|--|-.-=|+
T Consensus 194 ~----G---------la~AN~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 194 L----Q---------LALANTLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred c----c---------HHHHHHHHHHHcCCCEEEEecccCCC
Confidence 2 1 11123455568999998777655555
No 184
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=49.95 E-value=49 Score=32.62 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=37.7
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCCc
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGH 229 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshGH 229 (327)
++++.+ .+++.++.+.+.|...|-| +|..|. ..|+ -+.+-+++||+++ |++- ..-|+|
T Consensus 139 ~~~~~e-~l~~~a~~~~~~Ga~~i~i--------~DT~G~--~~P~-~v~~~v~~l~~~l~~~i~---------ig~H~H 197 (337)
T PRK08195 139 HMAPPE-KLAEQAKLMESYGAQCVYV--------VDSAGA--LLPE-DVRDRVRALRAALKPDTQ---------VGFHGH 197 (337)
T ss_pred cCCCHH-HHHHHHHHHHhCCCCEEEe--------CCCCCC--CCHH-HHHHHHHHHHHhcCCCCe---------EEEEeC
Confidence 355654 5788888888888876543 334443 2332 3667788888888 5643 345888
Q ss_pred ce
Q 020319 230 DG 231 (327)
Q Consensus 230 cG 231 (327)
+-
T Consensus 198 nn 199 (337)
T PRK08195 198 NN 199 (337)
T ss_pred CC
Confidence 64
No 185
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=49.86 E-value=35 Score=34.22 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=45.9
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcce
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcG 231 (327)
|..++ .+++.++++.+.|+..|-| +|..|..- |. -+.+-++.||+.+|+. +..-|+|+-
T Consensus 193 r~~~~-~l~~~~~~~~~~Gad~I~l--------~DT~G~a~--P~-~v~~lv~~l~~~~~~~---------~i~~H~Hnd 251 (347)
T PLN02746 193 PVPPS-KVAYVAKELYDMGCYEISL--------GDTIGVGT--PG-TVVPMLEAVMAVVPVD---------KLAVHFHDT 251 (347)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEe--------cCCcCCcC--HH-HHHHHHHHHHHhCCCC---------eEEEEECCC
Confidence 34443 4666666666666665433 33344321 22 2556677777777742 234577753
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMM 269 (327)
. | .=..-++.-.+||||+|--|=.-
T Consensus 252 ~----G---------lA~AN~lAA~~aGa~~vd~sv~G 276 (347)
T PLN02746 252 Y----G---------QALANILVSLQMGISTVDSSVAG 276 (347)
T ss_pred C----C---------hHHHHHHHHHHhCCCEEEEeccc
Confidence 2 2 00113566689999998655543
No 186
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=49.77 E-value=16 Score=34.83 Aligned_cols=49 Identities=31% Similarity=0.437 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCCCceeee
Q 020319 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 243 ~Tv~~Lak~Als~A~AGADiVAPSDMMDGR-----------V~aIR~aLD~~Gf~~v~IMS 292 (327)
.-+..|+++....-.+|||++= =|.|||+ |.++|+.++...|-||=.|-
T Consensus 14 ~dfanL~~e~~~~l~~GadwlH-lDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV 73 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLH-LDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMV 73 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEE-EeeecccccCCcccchHHHHHHHhccCCCcceeEEEee
Confidence 3467789999999999999986 4999997 88999999999998888774
No 187
>PRK05481 lipoyl synthase; Provisional
Probab=49.72 E-value=40 Score=32.37 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred ceeeEEEeeCCC-C---cccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHH
Q 020319 129 FVYPLFIHEGEE-D---TPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIW 204 (327)
Q Consensus 129 LI~PlFV~eg~~-~---~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr 204 (327)
-..-|.+++|=. . =.|+.-.| ..++.+ +++++++++.+.|++-|.|-|..-++..| .| .--+.+.++
T Consensus 53 ~~~fi~is~GC~~~C~FC~i~~~r~-~s~~~e-eI~~ea~~l~~~G~kEI~L~gg~~~d~~~-~~------~~~l~~Ll~ 123 (289)
T PRK05481 53 TATFMILGDICTRRCPFCDVATGRP-LPLDPD-EPERVAEAVARMGLKYVVITSVDRDDLPD-GG------AQHFAETIR 123 (289)
T ss_pred eEEEEEecccccCCCCCceeCCCCC-CCCCHH-HHHHHHHHHHHCCCCEEEEEEeeCCCccc-cc------HHHHHHHHH
Confidence 334445666632 1 12333334 236776 79999999999999999998752111111 01 014788999
Q ss_pred HHHHHCCCeeEEeeecccCCC----------CCCcceeecCCCccccHH---------HHHHHHHHHHHHHHc--CCCee
Q 020319 205 LLKDRYPDLVIYTDVALDPYS----------SDGHDGIVREDGVIMNDE---------TVHQLCKQAVSQARA--GADVV 263 (327)
Q Consensus 205 ~iK~~fPdl~VitDVcLc~YT----------shGHcGIl~~~G~IdND~---------Tv~~Lak~Als~A~A--GADiV 263 (327)
.||+.+|++-| +++...+. ..| +-++.. +..-.|+ |.+...+.--...++ |..+
T Consensus 124 ~I~~~~p~irI--~~l~~~~~~~~e~L~~l~~ag-~~i~~~-~~ets~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~- 198 (289)
T PRK05481 124 AIRELNPGTTI--EVLIPDFRGRMDALLTVLDAR-PDVFNH-NLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPT- 198 (289)
T ss_pred HHHhhCCCcEE--EEEccCCCCCHHHHHHHHhcC-cceeec-cccChHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeE-
Confidence 99999998753 33322111 112 222311 0000122 222222222223344 5443
Q ss_pred cCCCCCCch------HHHHHHHHHHCCCCCceeeehhh
Q 020319 264 SPSDMMDGR------VGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 264 APSDMMDGR------V~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
=+|||=|- +...=+.|.+.||..+.|..||.
T Consensus 199 -~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 199 -KSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred -eeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 37888875 22333467788999999999996
No 188
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.51 E-value=27 Score=32.49 Aligned_cols=55 Identities=24% Similarity=0.475 Sum_probs=42.5
Q ss_pred CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 141 ~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+..|..+||+.- ..|+..+.++|...|.|||- . . .|- +.-|+.||.=||++-+|.
T Consensus 99 ~~~i~~iPG~~T-------ptEi~~A~~~Ga~~vKlFPA-~-~----~GG---------~~yikal~~plp~i~~~p 153 (204)
T TIGR01182 99 DHGIPIIPGVAT-------PSEIMLALELGITALKLFPA-E-V----SGG---------VKMLKALAGPFPQVRFCP 153 (204)
T ss_pred HcCCcEECCCCC-------HHHHHHHHHCCCCEEEECCc-h-h----cCC---------HHHHHHHhccCCCCcEEe
Confidence 468999999943 56899999999999999994 1 1 110 357999999999877664
No 189
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=49.34 E-value=1.9e+02 Score=28.40 Aligned_cols=103 Identities=12% Similarity=0.207 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCC---------
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSD--------- 227 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTsh--------- 227 (327)
++.++++++++.|.+.|.+ ++ .+-|+++++.+ |++-++.|.+ .-||..
T Consensus 129 ~~~~~a~~~~~~Gf~~~Ki--Kv-------------------~~~v~avre~~G~~~~l~vDaN-~~w~~~~A~~~~~~l 186 (361)
T cd03322 129 ELLEAVERHLAQGYRAIRV--QL-------------------PKLFEAVREKFGFEFHLLHDVH-HRLTPNQAARFGKDV 186 (361)
T ss_pred HHHHHHHHHHHcCCCeEee--CH-------------------HHHHHHHHhccCCCceEEEECC-CCCCHHHHHHHHHHh
Confidence 5888999999999999886 11 45577777777 4677777776 445432
Q ss_pred Cccee--ecCCCccccHHHHHHHHH----------------HHHHHHH-cCCCeecCCCCCCchHHHHHHHHHH
Q 020319 228 GHDGI--VREDGVIMNDETVHQLCK----------------QAVSQAR-AGADVVSPSDMMDGRVGAIRAALDA 282 (327)
Q Consensus 228 GHcGI--l~~~G~IdND~Tv~~Lak----------------~Als~A~-AGADiVAPSDMMDGRV~aIR~aLD~ 282 (327)
...++ +.|-=..++-+.+..|.+ .+....+ -.+|++-|-=|--|=|...++..+-
T Consensus 187 ~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~ 260 (361)
T cd03322 187 EPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADL 260 (361)
T ss_pred hhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHH
Confidence 11222 211111122233333322 2222333 3599999988887766665555543
No 190
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=49.33 E-value=2.3e+02 Score=26.80 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
.|...+..+.++||+.|++..=-++..-|+....-++ --..-|+.||+.++++.|.+ +. ...||.-.-
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~---~a~~Li~~i~~~~~~f~ig~--a~---~Peghp~~~---- 141 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFN---YASELVEFIRNEFGDFDIGV--AA---YPEKHPEAP---- 141 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCC---CHHHHHHHHHHhcCCeeEEE--Ee---CCCCCCCCC----
Confidence 4788888999999999997643222111101111122 24456688888877654432 22 123443211
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCC
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGF 285 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG-RV~aIR~aLD~~Gf 285 (327)
+.|+-+++|. .-.+||||.+=--=.-|- .+...++.+.+.|.
T Consensus 142 --~~~~~~~~L~----~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi 184 (272)
T TIGR00676 142 --NLEEDIENLK----RKVDAGADYAITQLFFDNDDYYRFVDRCRAAGI 184 (272)
T ss_pred --CHHHHHHHHH----HHHHcCCCeEeeccccCHHHHHHHHHHHHHcCC
Confidence 1234455444 346899997766666664 35567777778876
No 191
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=49.22 E-value=1e+02 Score=33.54 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgv-----------i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTs 226 (327)
..+-++.+.+.|...|-|-+- +.+.-+|+.|..--|---++.+.|++||+.++ |+.|..=+..+.|..
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 344455678899999988432 23445788776555666778899999999995 677776666655532
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
+| .+-++++ +.|-.+.++|+|+|.-|.
T Consensus 633 ---------~g-~~~~~~~----~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 633 ---------GG-NTPDDAV----EIARAFKAAGADLIDVSS 659 (765)
T ss_pred ---------CC-CCHHHHH----HHHHHHHhcCCcEEEeCC
Confidence 12 2334454 344456789999998773
No 192
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=49.02 E-value=1.4e+02 Score=29.09 Aligned_cols=119 Identities=12% Similarity=0.126 Sum_probs=69.2
Q ss_pred chhhHHHHHHHHHHcC--CCeEEEeecCCCCCCCcc-cc---cCcCCCCcHHHHHHHHHHH-------------------
Q 020319 155 WRHGLVQEVAKARDVG--VNSVVLFPKVPDALKSPT-GD---EAYNDNGLVPRTIWLLKDR------------------- 209 (327)
Q Consensus 155 id~~l~~ev~~~~~lG--I~sVlLFgvi~~~~KD~~-Gs---~A~n~~glV~rAIr~iK~~------------------- 209 (327)
-|...++-+.++.+.| +-..+|||. +...|.. .- ++-|+.--.++|+.++|+.
T Consensus 9 ~d~~~l~av~~a~~~g~~~~~~ilvg~--~~~~~~~~~~~ii~~~~~~~aa~~av~lv~~G~aD~lmkG~i~T~~~lrav 86 (271)
T TIGR02709 9 SQPEILQLVKKALKEAEQPLQFIVFDT--NENLDTENLWKYVHCSDEAAVAQEAVSLVATGQAQILLKGIIQTHTLLKEM 86 (271)
T ss_pred CCHHHHHHHHHHHHcCCceeEEEEEcC--cccCCcccCeeEEECCChHHHHHHHHHHHHCCCCCEEEcCCcCcHHHHHHH
Confidence 3556889999999999 567788884 3333332 11 1223333344444443332
Q ss_pred ------CCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 020319 210 ------YPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 210 ------fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
.+.--+++-|++-+.-. |--++--|.-|+-+.|++++++++..-++ ..| .-
T Consensus 87 l~~~~gl~~~~~~S~v~i~~~p~--~~~l~~tD~~vn~~P~~eqk~~I~~nA~~-----------------~ar----~l 143 (271)
T TIGR02709 87 LKSEHQLKNKPILSHVAMVELPA--GKTFLLTDCAMNIAPTQATLIEIVENAKE-----------------VAQ----KL 143 (271)
T ss_pred HHHHcCCCCCCeeEEEEEEEecC--CCEEEEECCCccCCcCHHHHHHHHHHHHH-----------------HHH----Hc
Confidence 23334556665554322 22222235678888999999999766544 222 23
Q ss_pred CC--CCceeeehhhhhh
Q 020319 284 GF--QHVSIMSYTAKYA 298 (327)
Q Consensus 284 Gf--~~v~IMSYSAKyA 298 (327)
|+ -+|+++|||.++.
T Consensus 144 Gie~PkVAlLS~se~~s 160 (271)
T TIGR02709 144 GLHHPKIALLSAAENFN 160 (271)
T ss_pred CCCCCeEEEEecccCCC
Confidence 77 5888888887763
No 193
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=48.46 E-value=28 Score=37.11 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=59.1
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCccee
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGI 232 (327)
++++ .+++.++++.+.|+..|.| ||..|. ..|.- +.+-++.||++++ + +..-|.||-.
T Consensus 151 ~t~~-~~~~~a~~l~~~Gad~I~i--------~Dt~G~--~~P~~-~~~lv~~lk~~~~-~---------pi~~H~Hnt~ 208 (592)
T PRK09282 151 HTIE-KYVELAKELEEMGCDSICI--------KDMAGL--LTPYA-AYELVKALKEEVD-L---------PVQLHSHCTS 208 (592)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEE--------CCcCCC--cCHHH-HHHHHHHHHHhCC-C---------eEEEEEcCCC
Confidence 5665 6889999999999987554 555554 22222 4567788888875 2 3455777632
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeec--CCCCCCc----hHHHHHHHHHHCCC
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVS--PSDMMDG----RVGAIRAALDAEGF 285 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVA--PSDMMDG----RV~aIR~aLD~~Gf 285 (327)
| .-...++.-.+||||+|= =+.|--| -...+=.+|...|+
T Consensus 209 ----G---------la~An~laAv~aGad~vD~ai~g~g~~agn~~~e~vv~~L~~~g~ 254 (592)
T PRK09282 209 ----G---------LAPMTYLKAVEAGVDIIDTAISPLAFGTSQPPTESMVAALKGTPY 254 (592)
T ss_pred ----C---------cHHHHHHHHHHhCCCEEEeeccccCCCcCCHhHHHHHHHHHhCCC
Confidence 2 011245666899999972 2222222 13445557777787
No 194
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=48.01 E-value=72 Score=29.71 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=54.8
Q ss_pred eeEEEeeCCCCcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc----c----ccCcCC---CCcH
Q 020319 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPT----G----DEAYND---NGLV 199 (327)
Q Consensus 131 ~PlFV~eg~~~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~----G----s~A~n~---~glV 199 (327)
.||+|.-... ++.+ ++.+.++.+.+.|+..|.+.+.......|.. + ...+.. ....
T Consensus 163 ~pv~vKl~~~------------~~~~-~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~ 229 (289)
T cd02810 163 IPLLVKLSPY------------FDLE-DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLA 229 (289)
T ss_pred CCEEEEeCCC------------CCHH-HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHH
Confidence 6888875431 1333 5788888899999999999864321111110 0 000100 1123
Q ss_pred HHHHHHHHHHCC-CeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 200 PRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 200 ~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
.+.|+.||+.+| ++-||+ .|-|.+-+. +..+-++|||.|.
T Consensus 230 ~~~v~~i~~~~~~~ipiia------------------~GGI~~~~d-------a~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARLQLDIPIIG------------------VGGIDSGED-------VLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhcCCCCCEEE------------------ECCCCCHHH-------HHHHHHcCccHhe
Confidence 567888888887 554443 366665433 3333457999875
No 195
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=47.64 E-value=22 Score=35.16 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHcCCCeecC--CCCC-----------------Cc--hHHHHHHHHHHCCCCCceeeehh
Q 020319 244 TVHQLCKQAVSQARAGADVVSP--SDMM-----------------DG--RVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 244 Tv~~Lak~Als~A~AGADiVAP--SDMM-----------------DG--RV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
|+=-=..||+.-|+|||++|+| +-|. || .|..|.+.++..|| ++-||+=|
T Consensus 154 TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~-~T~vmaAS 224 (313)
T cd00957 154 TLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGY-KTKVMGAS 224 (313)
T ss_pred eeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCC-CcEEEecc
Confidence 3333456999999999999999 1222 22 37788888999999 68888544
No 196
>PLN02540 methylenetetrahydrofolate reductase
Probab=47.56 E-value=1.8e+02 Score=31.38 Aligned_cols=136 Identities=13% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCCCceEecch----hhHHHHHHHHHHcCCCeEEEeecCCCCCCCc--ccccCcCCCCcHHHHHHHHHHHCCCeeEEeee
Q 020319 146 AMPGCYRLGWR----HGLVQEVAKARDVGVNSVVLFPKVPDALKSP--TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV 219 (327)
Q Consensus 146 SMPGv~r~sid----~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~--~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDV 219 (327)
.++=+.+++.. ..|.+.++.+.++||+.|+...=-|+...|. .....++ -...-|+.||+.+.+. -++
T Consensus 58 Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~---~A~dLV~~Ir~~~gd~---f~I 131 (565)
T PLN02540 58 CVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFA---CALDLVKHIRSKYGDY---FGI 131 (565)
T ss_pred CCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcc---cHHHHHHHHHHhCCCC---ceE
Confidence 34555555442 1377777888999999998874323211111 0011121 2445677888887751 112
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH-HHHHHHHHHCCCCCcee
Q 020319 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRV-GAIRAALDAEGFQHVSI 290 (327)
Q Consensus 220 cLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV-~aIR~aLD~~Gf~~v~I 290 (327)
++--|- .||.-....++ ..|....+...+--..-.+||||.+=--=.-|-.. ....+.+.+.|. +++|
T Consensus 132 gVAGYP-EgHpe~~~~~~-~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi-~vPI 200 (565)
T PLN02540 132 TVAGYP-EAHPDVIGGDG-LATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGI-TCPI 200 (565)
T ss_pred EEeCCC-CCCCccccccc-ccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcCC-CCCE
Confidence 223364 48875442211 11222222222222345678999887776677554 455566667775 3443
No 197
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=47.56 E-value=22 Score=33.99 Aligned_cols=58 Identities=12% Similarity=0.283 Sum_probs=43.5
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
++.+ ++++++.++.+.|-..|=+... .|++|...+++ ..+.++++.||++.||++|-.
T Consensus 23 ~tpe-Eia~~A~~c~~AGAa~vH~H~R-----~~~~G~~s~d~-~~~~e~~~~IR~~~pd~iv~~ 80 (272)
T PF05853_consen 23 ITPE-EIAADAVACYEAGAAIVHIHAR-----DDEDGRPSLDP-ELYAEVVEAIRAACPDLIVQP 80 (272)
T ss_dssp -SHH-HHHHHHHHHHHHTESEEEE-EE------TTTS-EE--H-HHHHHHHHHHHHHSTTSEEEE
T ss_pred CCHH-HHHHHHHHHHHcCCcEEEeecC-----CCCCCCcCCCH-HHHHHHHHHHHHHCCCeEEEe
Confidence 4565 7999999999999999888764 25567766655 578889999999999988863
No 198
>PRK12346 transaldolase A; Provisional
Probab=47.55 E-value=28 Score=34.65 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCeecCC--CCC-----------------C--chHHHHHHHHHHCCCCCceeeehhh
Q 020319 249 CKQAVSQARAGADVVSPS--DMM-----------------D--GRVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 249 ak~Als~A~AGADiVAPS--DMM-----------------D--GRV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
..||+.-|+|||+.|+|= -|. | -.|..|.+.++.+|| ++-||.=|-
T Consensus 160 ~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~-~T~Vm~ASf 226 (316)
T PRK12346 160 FAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRY-ETIVMGASF 226 (316)
T ss_pred HHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCC-CcEEEeccc
Confidence 459999999999999991 121 1 247778888888888 688886553
No 199
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=47.25 E-value=32 Score=36.93 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=75.6
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcce
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcG 231 (327)
.|+++ .+++.++++.+.|+..|.| ||..|-. +|. -+-+-+++||++++ + |..-|+||-
T Consensus 150 ~~t~e-~~~~~ak~l~~~Gad~I~I--------kDtaG~l--~P~-~v~~lv~alk~~~~-i---------pi~~H~Hnt 207 (596)
T PRK14042 150 VHTLD-NFLELGKKLAEMGCDSIAI--------KDMAGLL--TPT-VTVELYAGLKQATG-L---------PVHLHSHST 207 (596)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEe--------CCcccCC--CHH-HHHHHHHHHHhhcC-C---------EEEEEeCCC
Confidence 46675 6899999999999987655 4444432 222 25567888888864 2 344588863
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec--CCCCCCc--h--HHHHHHHHHHCCCC-Cc---eeeehhhhhhc--
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS--PSDMMDG--R--VGAIRAALDAEGFQ-HV---SIMSYTAKYAS-- 299 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVA--PSDMMDG--R--V~aIR~aLD~~Gf~-~v---~IMSYSAKyAS-- 299 (327)
. |- . ...++.-++||||+|= =+.|--| . +..+=.+|...|+. .+ .|+..+..|.-
T Consensus 208 ~----Gl----a-----~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr 274 (596)
T PRK14042 208 S----GL----A-----SICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVR 274 (596)
T ss_pred C----Cc----H-----HHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2 20 1 1134566899999973 3333322 1 23344567777772 23 33554533333
Q ss_pred cccchhHHHhhcCCCCCC--CcccCCC
Q 020319 300 SFYGPFREALDSNPRFGD--KKTKLQR 324 (327)
Q Consensus 300 sfYGPFRdAa~Sap~fGD--RktYQmd 324 (327)
.+|.+| .+.+...| =-.|||+
T Consensus 275 ~~y~~~----~~~~~~~~~~v~~hq~P 297 (596)
T PRK14042 275 KKYSQF----ESEAQNIDPRVQLYQVP 297 (596)
T ss_pred HHHhhc----CCccccCCcceeecCCC
Confidence 357777 34444333 3345665
No 200
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=47.04 E-value=34 Score=35.77 Aligned_cols=94 Identities=20% Similarity=0.271 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
-+++.++++.+.|+..|.| ||..|-. .|. -+.+-|++||+ .+++ |..-|+||-. |
T Consensus 164 y~~~~a~~l~~~Gad~I~I--------kDtaG~l--~P~-~v~~Lv~alk~-~~~~---------pi~~H~Hnt~----G 218 (468)
T PRK12581 164 YYLSLVKELVEMGADSICI--------KDMAGIL--TPK-AAKELVSGIKA-MTNL---------PLIVHTHATS----G 218 (468)
T ss_pred HHHHHHHHHHHcCCCEEEE--------CCCCCCc--CHH-HHHHHHHHHHh-ccCC---------eEEEEeCCCC----c
Confidence 4777788888888887654 4444432 222 24556777776 4443 3445888632 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCCc----hHHHHHHHHHHCCC
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMDG----RVGAIRAALDAEGF 285 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV--APSDMMDG----RV~aIR~aLD~~Gf 285 (327)
.-..-++.-++||||+| |=+.|--| -+..+=.+|+..|+
T Consensus 219 ---------lA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 219 ---------ISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred ---------cHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCC
Confidence 11123566689999997 22333333 12334457777787
No 201
>PLN02808 alpha-galactosidase
Probab=46.94 E-value=2.2e+02 Score=29.17 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccccCcCC----CCcHHHHHHHHHHHCCCeeEEeeecccCCCC-CCcceeecCCCccc
Q 020319 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYND----NGLVPRTIWLLKDRYPDLVIYTDVALDPYSS-DGHDGIVREDGVIM 240 (327)
Q Consensus 166 ~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~----~glV~rAIr~iK~~fPdl~VitDVcLc~YTs-hGHcGIl~~~G~Id 240 (327)
+.++|.+.|.|=--=-...+|+.|.--.|+ +|+ ..-...|+++==...|++|.-- +|= .+|-|-
T Consensus 63 l~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~-~~lad~iH~~GlkfGiy~~~G~--~tC~~~~pGs-------- 131 (386)
T PLN02808 63 LAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGI-KALADYVHSKGLKLGIYSDAGT--LTCSKTMPGS-------- 131 (386)
T ss_pred hHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccH-HHHHHHHHHCCCceEEEecCCc--cccCCCCCcc--------
Confidence 567888888771100011356666654443 443 3344555555456788777421 111 123332
Q ss_pred cHHHHHHHHHHHHHHHHcCCCee------cCCCCCCchHHHHHHHHHHCCC
Q 020319 241 NDETVHQLCKQAVSQARAGADVV------SPSDMMDGRVGAIRAALDAEGF 285 (327)
Q Consensus 241 ND~Tv~~Lak~Als~A~AGADiV------APSDMMDGRV~aIR~aLD~~Gf 285 (327)
......-|-.+|+=|.|.| .|+..+..++.+++++|+..|-
T Consensus 132 ----~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGR 178 (386)
T PLN02808 132 ----LGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGR 178 (386)
T ss_pred ----hHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCC
Confidence 3444555777999999987 4667788999999999999874
No 202
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.80 E-value=37 Score=31.56 Aligned_cols=66 Identities=23% Similarity=0.470 Sum_probs=45.8
Q ss_pred CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe--e
Q 020319 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--D 218 (327)
Q Consensus 141 ~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit--D 218 (327)
+..|..+||+.- ..|+..+.++|..-|.|||- . . .| | ..-|+.||.-||++-++. -
T Consensus 106 ~~~i~~iPG~~T-------ptEi~~a~~~Ga~~vKlFPa-~-~----~g-------g--~~~lk~l~~p~p~~~~~ptGG 163 (212)
T PRK05718 106 EGPIPLIPGVST-------PSELMLGMELGLRTFKFFPA-E-A----SG-------G--VKMLKALAGPFPDVRFCPTGG 163 (212)
T ss_pred HcCCCEeCCCCC-------HHHHHHHHHCCCCEEEEccc-h-h----cc-------C--HHHHHHHhccCCCCeEEEeCC
Confidence 468899999942 45689999999999999994 1 0 11 1 357899999999866553 1
Q ss_pred e---cccCCCCCC
Q 020319 219 V---ALDPYSSDG 228 (327)
Q Consensus 219 V---cLc~YTshG 228 (327)
| .+.+|-..|
T Consensus 164 V~~~ni~~~l~ag 176 (212)
T PRK05718 164 ISPANYRDYLALP 176 (212)
T ss_pred CCHHHHHHHHhCC
Confidence 2 344555555
No 203
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=46.79 E-value=1.4e+02 Score=29.64 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
++..+-+-+.|-=+||..-.+|.+.+-..|-.-.| + ++-|++||+.. ++-||. +++ .|+
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~--~--~~~I~~Ik~~V-~iPVIG--------------i~K-~~~- 76 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMA--D--PKMIKEIMDAV-SIPVMA--------------KVR-IGH- 76 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecC--C--HHHHHHHHHhC-CCCeEE--------------eee-hhH-
Confidence 66777788999999999988887654333322221 2 35699999987 887774 443 233
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeeehhh
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
-+.|....++|||||+=|+-. |=-+..||+. | ++.+|+=.+
T Consensus 77 ---------~~Ea~~L~eaGvDiIDaT~r~rP~~~~~~~iK~~-----~-~~l~MAD~s 120 (283)
T cd04727 77 ---------FVEAQILEALGVDMIDESEVLTPADEEHHIDKHK-----F-KVPFVCGAR 120 (283)
T ss_pred ---------HHHHHHHHHcCCCEEeccCCCCcHHHHHHHHHHH-----c-CCcEEccCC
Confidence 567888999999999644432 3445555543 5 677776443
No 204
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=46.64 E-value=22 Score=39.14 Aligned_cols=50 Identities=22% Similarity=0.342 Sum_probs=37.0
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCCCceeee
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV--APSDMMD-GRV~aIR~aLD~~Gf~~v~IMS 292 (327)
.-|-++||+ |....++|||||| +=-+|=| --++.||+.|.+.|+ ++++++
T Consensus 106 T~D~eatv~----Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~-~iPLVA 158 (733)
T PLN02925 106 TKDVEATVD----QVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY-NIPLVA 158 (733)
T ss_pred cccHHHHHH----HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC-CCCEEE
Confidence 345556655 8888999999998 2223333 447899999999999 589886
No 205
>PLN02743 nicotinamidase
Probab=46.44 E-value=60 Score=30.64 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcH----HHHHHHHHHHC--C--CeeEEeeecccCCCCCCcceeecCC
Q 020319 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV----PRTIWLLKDRY--P--DLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 165 ~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV----~rAIr~iK~~f--P--dl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
.|.++||+.++|.|+..+ .-| .-+..+...-| | +++|++|.|-+ |+...|.+-.-++
T Consensus 145 ~Lr~~gI~~liv~Gv~T~--------------~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at-~d~~~h~~~~~~~ 209 (239)
T PLN02743 145 WVNNNKIKVILVVGICTD--------------ICVLDFVASALSARNHGILPPLEDVVVYSRGCAT-YDLPLHVAKTIKG 209 (239)
T ss_pred HHHHCCCCEEEEEEeCcc--------------hhccChHHHHHHHHHcCCCCCCceEEEeCCcccc-CChhhhhhhhhcc
Confidence 367899999999997443 333 23444444545 2 79999999975 6888898865556
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
|..-..++++.++--. ++..||.||.
T Consensus 210 ~~~~~~~~~~~~~~~~--~~~~~~~v~~ 235 (239)
T PLN02743 210 ALAHPQELMHHMGLYM--AKGRGAKVVS 235 (239)
T ss_pred ccCCCHHHHHHHHHHH--HHhCCcEeee
Confidence 7777777777654332 2355887763
No 206
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=46.31 E-value=40 Score=33.22 Aligned_cols=54 Identities=31% Similarity=0.503 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--h--------HHHHHHHHHHCCC-CCceeeehh
Q 020319 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDG--R--------VGAIRAALDAEGF-QHVSIMSYT 294 (327)
Q Consensus 241 ND~Tv~~Lak~Als~A~AGADiVAPSDMMDG--R--------V~aIR~aLD~~Gf-~~v~IMSYS 294 (327)
=.+.|++|+++|....+.|+.|+--||=--+ | |+++.+.|-++|. .+++|+-=|
T Consensus 137 L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIves 201 (287)
T PF04898_consen 137 LEEALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVES 201 (287)
T ss_dssp HHHHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEec
Confidence 4788999999999999999999998885432 3 8999999999999 899987544
No 207
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=45.92 E-value=24 Score=38.23 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=37.9
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCCCceeee
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV--APSDMMD-GRV~aIR~aLD~~Gf~~v~IMS 292 (327)
.-|-++||+ |....++|||||| +=-+|=| --+..||+.|.+.|+ ++++++
T Consensus 37 T~D~~atv~----Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~-~iPLVA 89 (611)
T PRK02048 37 TMDTEACVA----QAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGY-MVPLVA 89 (611)
T ss_pred cccHHHHHH----HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC-CCCEEE
Confidence 445566666 7788999999997 3334444 347889999999999 699986
No 208
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=45.90 E-value=69 Score=31.20 Aligned_cols=71 Identities=15% Similarity=0.009 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
-++++++++++|..-|+|=.. ++ .-+.++++.+++..|++.|.+ .|-
T Consensus 197 tleea~ea~~~GaDiI~lDn~-~~--------------e~l~~~v~~l~~~~~~~~lea------------------sGG 243 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDKF-TP--------------QQLHHLHERLKFFDHIPTLAA------------------AGG 243 (277)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CH--------------HHHHHHHHHHhccCCCEEEEE------------------ECC
Confidence 488999999999999888432 21 236778888887777765433 243
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD 270 (327)
| |.++++ .||+.|+|+|+=|.+.-
T Consensus 244 I-~~~ni~-------~ya~~GvD~is~gal~~ 267 (277)
T TIGR01334 244 I-NPENIA-------DYIEAGIDLFITSAPYY 267 (277)
T ss_pred C-CHHHHH-------HHHhcCCCEEEeCccee
Confidence 4 344444 57889999998776643
No 209
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.90 E-value=89 Score=30.47 Aligned_cols=65 Identities=26% Similarity=0.370 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHH
Q 020319 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRA 278 (327)
Q Consensus 199 V~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~ 278 (327)
+.++|+.+|+..|+.-|...| + |++ ||...+++|||+|=---|.--.+..+.+
T Consensus 169 i~~av~~~r~~~~~~kIeVEv--------------------~---~le----ea~~a~~agaDiI~LDn~~~e~l~~~v~ 221 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEV--------------------E---SLE----DALKAAKAGADIIMLDNMTPEEIREVIE 221 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEe--------------------C---CHH----HHHHHHHcCcCEEEECCCCHHHHHHHHH
Confidence 888999999988875544322 2 444 6777789999999887787788899999
Q ss_pred HHHHCCCC-Ccee
Q 020319 279 ALDAEGFQ-HVSI 290 (327)
Q Consensus 279 aLD~~Gf~-~v~I 290 (327)
.|++.|+. ++.|
T Consensus 222 ~l~~~~~~~~~~l 234 (278)
T PRK08385 222 ALKREGLRERVKI 234 (278)
T ss_pred HHHhcCcCCCEEE
Confidence 99888874 4433
No 210
>PTZ00411 transaldolase-like protein; Provisional
Probab=45.77 E-value=30 Score=34.61 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCeecCC--CCC-----------------Cc--hHHHHHHHHHHCCCCCceeeehhh
Q 020319 248 LCKQAVSQARAGADVVSPS--DMM-----------------DG--RVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 248 Lak~Als~A~AGADiVAPS--DMM-----------------DG--RV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
-..||+.-|+|||++|||= -|. || .|..|.+.++.+|| ++-||+=|-
T Consensus 170 S~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~-~T~Im~ASf 237 (333)
T PTZ00411 170 SFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGY-KTIVMGASF 237 (333)
T ss_pred CHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCC-CeEEEeccc
Confidence 3569999999999999992 111 11 35578888889998 678886553
No 211
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=45.76 E-value=1.1e+02 Score=25.82 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCCcceeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
+.+++++.+.+.|...+++.+-. -.+ ..+ ++++ +.+-++.+.+.. .++.|+.... -++.
T Consensus 66 ~~~~~a~~a~~~Gad~i~v~~~~--~~~-~~~----~~~~-~~~~~~~i~~~~~~~~pv~iy~~------p~~~------ 125 (201)
T cd00945 66 VKVAEVEEAIDLGADEIDVVINI--GSL-KEG----DWEE-VLEEIAAVVEAADGGLPLKVILE------TRGL------ 125 (201)
T ss_pred HHHHHHHHHHHcCCCEEEEeccH--HHH-hCC----CHHH-HHHHHHHHHHHhcCCceEEEEEE------CCCC------
Confidence 68999999999999999985421 000 001 2333 344566666664 4555554322 1111
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
...+++..+++.+ .++|+|.|--+.-
T Consensus 126 ---~~~~~~~~~~~~~---~~~g~~~iK~~~~ 151 (201)
T cd00945 126 ---KTADEIAKAARIA---AEAGADFIKTSTG 151 (201)
T ss_pred ---CCHHHHHHHHHHH---HHhCCCEEEeCCC
Confidence 1233344344433 5689999987764
No 212
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=45.47 E-value=95 Score=30.97 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=15.3
Q ss_pred CcHHHHHHHHHHHCCCeeEEe
Q 020319 197 GLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 197 glV~rAIr~iK~~fPdl~Vit 217 (327)
-.+...|+.||+.+|...||.
T Consensus 122 ~~~~~~i~~i~~~~p~~~vi~ 142 (321)
T TIGR01306 122 NSVINMIKHIKTHLPDSFVIA 142 (321)
T ss_pred HHHHHHHHHHHHhCCCCEEEE
Confidence 456677888888888776655
No 213
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=45.30 E-value=49 Score=33.36 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec---
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR--- 234 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~--- 234 (327)
+.+.|++.-++.|-.-+|+=|- .+.-.-|+.+|++| ++-|.+ |.-.|--..+.
T Consensus 230 eAlre~~~D~~EGAD~lMVKPa-----------------l~YLDIi~~~k~~~-~lPvaa------YqVSGEYaMikaAa 285 (322)
T PRK13384 230 QALLEALLDEAEGADILMVKPG-----------------TPYLDVLSRLRQET-HLPLAA------YQVGGEYAMIKFAA 285 (322)
T ss_pred HHHHHHHhhHhhCCCEEEEcCC-----------------chHHHHHHHHHhcc-CCCEEE------EEchHHHHHHHHHH
Confidence 4777888888889888887543 45567899999987 666666 99999888874
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
+.|.+|-++. +.+.-++..+||||+|
T Consensus 286 ~~G~~d~~~~---~~Esl~~~kRAGAd~I 311 (322)
T PRK13384 286 LAGALDERAV---VTETLGGLKRAGADLI 311 (322)
T ss_pred HcCCccHHHH---HHHHHHHHHHcCCCEE
Confidence 4688885433 3456788999999987
No 214
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=45.25 E-value=63 Score=31.07 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
.+-+.++++.++|...|=| + .|+-...+ ---.+.|+.+|+. .+.|.+.|-.=- .
T Consensus 72 ~~~~Yl~~~k~lGf~~IEi----S------~G~~~i~~-~~~~rlI~~~~~~--g~~v~~EvG~K~-------------~ 125 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEI----S------DGSMEISL-EERCNLIERAKDN--GFMVLSEVGKKS-------------P 125 (237)
T ss_pred hHHHHHHHHHHcCCCEEEE----c------CCccCCCH-HHHHHHHHHHHhC--CCeEeccccccC-------------C
Confidence 4677888999999999876 1 23333322 2346789999876 466665544311 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGR 272 (327)
.-+-..|.+.+.+++-..-+||||.| |+++|
T Consensus 126 ~~~~~~~~~~~i~~~~~~LeAGA~~V----iiEar 156 (237)
T TIGR03849 126 EKDSELTPDDRIKLINKDLEAGADYV----IIEGR 156 (237)
T ss_pred cccccCCHHHHHHHHHHHHHCCCcEE----EEeeh
Confidence 11114567888999999999999998 55554
No 215
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=45.00 E-value=34 Score=33.45 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHH
Q 020319 198 LVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR 277 (327)
Q Consensus 198 lV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR 277 (327)
-+.+||+.+|+..|+.-|..+| +|++ ||...+++|||+|==--|=--.+..+-
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv-----------------------~tle----qa~ea~~agaDiI~LDn~~~e~l~~av 227 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEA-----------------------DTPK----EAIAALRAQPDVLQLDKFSPQQATEIA 227 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC-----------------------CCHH----HHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 4788999999998876666655 1555 677778999999955444334444444
Q ss_pred HHH
Q 020319 278 AAL 280 (327)
Q Consensus 278 ~aL 280 (327)
+.+
T Consensus 228 ~~~ 230 (284)
T PRK06096 228 QIA 230 (284)
T ss_pred HHh
Confidence 444
No 216
>PLN02417 dihydrodipicolinate synthase
Probab=44.95 E-value=1.5e+02 Score=28.07 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=57.3
Q ss_pred cchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCccee
Q 020319 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 154 sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGI 232 (327)
.++ .+.+.++.+++.|++.|+++|... +...=..-=-.+.++...+... .+-|++-|
T Consensus 20 D~~-~~~~~i~~l~~~Gv~Gi~~~GstG--------E~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv------------- 77 (280)
T PLN02417 20 DLE-AYDSLVNMQIENGAEGLIVGGTTG--------EGQLMSWDEHIMLIGHTVNCFGGKIKVIGNT------------- 77 (280)
T ss_pred CHH-HHHHHHHHHHHcCCCEEEECccCc--------chhhCCHHHHHHHHHHHHHHhCCCCcEEEEC-------------
Confidence 343 588888899999999999999632 2111111112233444344333 24444311
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCC---eecCCCC---CCchHHHHHHHHHHCCCCCceeeehh
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGAD---VVSPSDM---MDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGAD---iVAPSDM---MDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
|...-+++++ .|-...++||| ++.|.-- -+|-+...++..+. . +||=|=
T Consensus 78 ----~~~~t~~~i~----~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~-~----pi~lYn 132 (280)
T PLN02417 78 ----GSNSTREAIH----ATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM-G----PTIIYN 132 (280)
T ss_pred ----CCccHHHHHH----HHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh-C----CEEEEE
Confidence 1112233433 55556789999 4444211 15666666666653 2 888773
No 217
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=44.93 E-value=69 Score=29.92 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=51.4
Q ss_pred CCCcccccCcCCCCcH-----HHHHHHHHHHCCCe-eEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH
Q 020319 184 LKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDL-VIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR 257 (327)
Q Consensus 184 ~KD~~Gs~A~n~~glV-----~rAIr~iK~~fPdl-~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~ 257 (327)
.||+.|+.+. ++. .++++.+|+.+|+. ..-.|| +.+| .++++..++
T Consensus 151 ~~~~h~t~~h---~~~~~~~~~~a~~~~~~~~~~~~~~~idv------------------e~~~-------~~~~~~~~~ 202 (281)
T cd00516 151 IKDNHGTMAH---SIIQAFGELAAVKALRRWLPELFIALIDV------------------EVDT-------LEEALEAAK 202 (281)
T ss_pred CCCCeEecCc---HHHHhcCHHHHHHHHHHhCCCCceEEEEE------------------EeCC-------HHHHHHHHh
Confidence 4677776654 455 38999999999961 111221 1121 336667778
Q ss_pred cC-CCeecCCCCCCch------HHHHHHHHHHCCCCCceeeeh
Q 020319 258 AG-ADVVSPSDMMDGR------VGAIRAALDAEGFQHVSIMSY 293 (327)
Q Consensus 258 AG-ADiVAPSDMMDGR------V~aIR~aLD~~Gf~~v~IMSY 293 (327)
+| +|+|=+-.|-..+ +...|+.||..|+.++-|...
T Consensus 203 ~~~~d~irlDs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 203 AGGADGIRLDSGSPEELDPAVLILKARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred cCCCCEEEeCCCChHHHHHHHHHHHHHHhhhhcCCCceEEEEe
Confidence 88 9999776663332 334566777888877777653
No 218
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.61 E-value=82 Score=30.72 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC--CCeeEEeeecccCCCCCCcceeecCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f--Pdl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
-++++.++++.|...|+|=- .++ --+.+++..+|+.. |++.+.+ .
T Consensus 191 ~leea~~a~~agaDiI~LDn-~~~--------------e~l~~~v~~l~~~~~~~~~~lea------------------S 237 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDN-MTP--------------EEIREVIEALKREGLRERVKIEV------------------S 237 (278)
T ss_pred CHHHHHHHHHcCcCEEEECC-CCH--------------HHHHHHHHHHHhcCcCCCEEEEE------------------E
Confidence 48899999999999777621 111 25677888888765 4443322 3
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
|-| |.++++ .||+.|+|+|+=|.+
T Consensus 238 GGI-~~~ni~-------~yA~tGvD~Is~gal 261 (278)
T PRK08385 238 GGI-TPENIE-------EYAKLDVDVISLGAL 261 (278)
T ss_pred CCC-CHHHHH-------HHHHcCCCEEEeChh
Confidence 555 677776 477899999987654
No 219
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.30 E-value=60 Score=30.65 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCccccc-----------C-----cCCCCcHHHHHHHHHHHCCCe-eEEeee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-----------A-----YNDNGLVPRTIWLLKDRYPDL-VIYTDV 219 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~-----------A-----~n~~glV~rAIr~iK~~fPdl-~VitDV 219 (327)
.+.+.+++|.++|.+.|+++++ |+--..+.... . .--|..+.+.+..+++++|++ +++.|+
T Consensus 165 ~i~~~v~~L~~~GAr~~~v~~l-pplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 242 (315)
T cd01837 165 NISSAIKRLYDLGARKFVVPGL-GPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADI 242 (315)
T ss_pred HHHHHHHHHHhCCCcEEEecCC-CCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeh
Confidence 4777888999999999999985 54322221110 1 112446777888888888885 455553
No 220
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=44.30 E-value=31 Score=34.26 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCeecC--CCCC-----------------Cc--hHHHHHHHHHHCCCCCceeeehh
Q 020319 247 QLCKQAVSQARAGADVVSP--SDMM-----------------DG--RVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 247 ~Lak~Als~A~AGADiVAP--SDMM-----------------DG--RV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
--..||+.-|+|||+.|+| +-|. || .|..|.+.++.+|| ++-||+=|
T Consensus 157 FS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~-~T~Im~AS 224 (317)
T TIGR00874 157 FSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGY-PTEVMGAS 224 (317)
T ss_pred cCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCC-CcEEEeec
Confidence 3356999999999999999 2222 22 46668888999999 58888544
No 221
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=44.09 E-value=87 Score=30.21 Aligned_cols=100 Identities=11% Similarity=0.083 Sum_probs=53.7
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCC-CCCcccccCcCCCCcHHH---HHHHHHHHCCCeeEEeeecccC
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLVPR---TIWLLKDRYPDLVIYTDVALDP 223 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~-~KD~~Gs~A~n~~glV~r---AIr~iK~~fPdl~VitDVcLc~ 223 (327)
|++.-|.. -..+.++.+++.|++.|.+|--+++. .+...+ .+.+..+.+ +|+..|+.- +...+++
T Consensus 67 ~~v~~~~r--~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~~g----~~v~~~~-- 135 (279)
T cd07947 67 PEVTGWIR--ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALDHG----IKPRCHL-- 135 (279)
T ss_pred CEEEEEec--CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHHCC----CeEEEEE--
Confidence 56666532 35788999999999999998644431 222222 222333333 344444432 2233333
Q ss_pred CCCCCcceeecCCCcccc---HHHHHHHHHHHHHHHHcCCC-eecCCCCCC
Q 020319 224 YSSDGHDGIVREDGVIMN---DETVHQLCKQAVSQARAGAD-VVSPSDMMD 270 (327)
Q Consensus 224 YTshGHcGIl~~~G~IdN---D~Tv~~Lak~Als~A~AGAD-iVAPSDMMD 270 (327)
+ |.+.- |..++.+.+.+-.-.++||| .|.=.|+.=
T Consensus 136 -----------e-d~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG 174 (279)
T cd07947 136 -----------E-DITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLG 174 (279)
T ss_pred -----------E-cccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 1 22222 33334444443334579999 698888765
No 222
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=44.00 E-value=91 Score=28.24 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcC------------CCCcHHHHHHHHHHHCCC-eeEEeee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN------------DNGLVPRTIWLLKDRYPD-LVIYTDV 219 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n------------~~glV~rAIr~iK~~fPd-l~VitDV 219 (327)
.+.+.++++.++|.+.|++.++ |+-...+....... -|..+.+.+..+++++|+ -+++.|+
T Consensus 132 ~~~~~i~~l~~~g~~~i~v~~~-p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 205 (270)
T cd01846 132 NLFQALQRLYAAGARNFLVLNL-PDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDT 205 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC-CCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEh
Confidence 5778888999999999988874 54333333332222 234566777788888887 4445554
No 223
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=43.85 E-value=72 Score=31.23 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
-+++++++++.|..-|+| .. +++ --+.++++.+++..|.+.|-+ .|-
T Consensus 198 tleqa~ea~~agaDiI~L-Dn-------------~~~-e~l~~av~~~~~~~~~~~lea------------------SGG 244 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQL-DK-------------FSP-QQATEIAQIAPSLAPHCTLSL------------------AGG 244 (284)
T ss_pred CHHHHHHHHHcCCCEEEE-CC-------------CCH-HHHHHHHHHhhccCCCeEEEE------------------ECC
Confidence 588999999999988888 11 222 235667877776666544322 243
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVAPSDMM 269 (327)
| |.+++. .||+.|+|+|+=|.+-
T Consensus 245 I-~~~ni~-------~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 245 I-NLNTLK-------NYADCGIRLFITSAPY 267 (284)
T ss_pred C-CHHHHH-------HHHhcCCCEEEECccc
Confidence 4 355554 6788999999877653
No 224
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=43.79 E-value=24 Score=35.26 Aligned_cols=60 Identities=28% Similarity=0.423 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecC---CCccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 195 DNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE---DGVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 195 ~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~---~G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
|.-+.-.-||.+|+..|||-|.+ |.-.|.-.++.. -|.+|-.. ..-+.-..+-+||||||
T Consensus 262 Pg~pyLDIir~~kd~~~dlpi~a------yqVSGEyaMi~aaa~~g~~Dlk~---~vmEsm~~frRAGAdiI 324 (340)
T KOG2794|consen 262 PGLPYLDIIRLLKDKTPDLPIAA------YQVSGEYAMIKAAALAGMFDLKK---VVMESMLGFRRAGADII 324 (340)
T ss_pred CCCcHHHHHHHHHhcCCCCceEE------EEecchHHHHHHHHhcccccHHH---HHHHHHHHHHhcCCcEE
Confidence 34455667888999999988766 888887776642 35666322 23345577899999997
No 225
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=43.68 E-value=69 Score=31.36 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCCeEEE-eec-CCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCC
Q 020319 159 LVQEVAKARDVGVNSVVL-FPK-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlL-Fgv-i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
+.+-++.+.+.|...|-| +|- .+...||..|+...+.-.++.+.+++++++.. +-|.+=+-+ |
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~-~pVsvKiR~------g-------- 143 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVS-IPVTVKHRI------G-------- 143 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC-CceEEEEEe------e--------
Confidence 555666677789998866 554 12235788899888888899999999998752 211110010 1
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
++.+.|.+.+.+.+-...++|+|.|.-.
T Consensus 144 --~~~~~t~~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 144 --IDDQDSYEFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred --eCCCcCHHHHHHHHHHHHHhCCCEEEEc
Confidence 1112345556666666779999999855
No 226
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=43.48 E-value=59 Score=32.79 Aligned_cols=139 Identities=22% Similarity=0.331 Sum_probs=85.8
Q ss_pred CCCCcccCCCCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEee-----CCCCcccCCCCCc-----eEecch--hhH
Q 020319 92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHE-----GEEDTPIGAMPGC-----YRLGWR--HGL 159 (327)
Q Consensus 92 ~g~p~~~~~~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~e-----g~~~~~I~SMPGv-----~r~sid--~~l 159 (327)
.|.=+|-|=+|.- - +-.++|+.+.++-++ +=.|+.-=..- |+=.+...|=|.. ||+... .+.
T Consensus 157 AGaDiVAPSdMMD----G-rV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eA 230 (323)
T PRK09283 157 AGADIVAPSDMMD----G-RVGAIREALDEAGFT-DVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREA 230 (323)
T ss_pred hCCCEEEcccccc----c-HHHHHHHHHHHCCCC-CCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHH
Confidence 3444555556631 1 225778877776663 22333321110 1102334444432 443221 247
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec---CC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR---ED 236 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~---~~ 236 (327)
+.|++.-++-|-.-+|+=|- .+.-.-|+.+|++|+ +-|.+ |.-.|--..+. ++
T Consensus 231 lre~~~D~~EGAD~lMVKPa-----------------l~YLDIi~~~k~~~~-~Pvaa------YqVSGEYaMikaAa~~ 286 (323)
T PRK09283 231 LREVALDIEEGADMVMVKPA-----------------LPYLDIIRRVKDEFN-LPVAA------YQVSGEYAMIKAAAQN 286 (323)
T ss_pred HHHHHhhHHhCCCEEEEcCC-----------------chHHHHHHHHHhcCC-CCEEE------EEccHHHHHHHHHHHc
Confidence 78888888889888887443 456678999999994 76666 99999888774 46
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
|.+|-++. +.+.-++..+||||+|
T Consensus 287 G~~D~~~~---~~Esl~~~kRAGAd~I 310 (323)
T PRK09283 287 GWIDEERV---VLESLLSIKRAGADGI 310 (323)
T ss_pred CCCCHHHH---HHHHHHHHHhcCCCEE
Confidence 88885533 3457789999999986
No 227
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=43.09 E-value=1e+02 Score=31.57 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=25.1
Q ss_pred ccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc
Q 020319 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221 (327)
Q Consensus 188 ~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL 221 (327)
.|.+-+-..| .+.|+.||+.+|+..|.+|.-+
T Consensus 204 vG~~L~~~~G--~~iVk~Lr~~~~~~~I~~DLK~ 235 (391)
T PRK13307 204 AGTPLIKKFG--LEVISKIREVRPDAFIVADLKT 235 (391)
T ss_pred ECHHHHHHhC--HHHHHHHHHhCCCCeEEEEecc
Confidence 4555555556 4789999999999999999876
No 228
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=43.04 E-value=75 Score=31.88 Aligned_cols=104 Identities=26% Similarity=0.408 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcC--CCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN--DNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n--~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
.+.++.+.+.|. |-+++ +---|..| +.+| .|-....--.+|+.. .|+..|||. |+++++|
T Consensus 150 ~~~l~~ll~~g~--ipvi~---pi~~~~~g-~~~nvnaD~~A~~lA~al~a~--kli~ltdv~----------Gv~~~~g 211 (429)
T TIGR01890 150 TEGIRRQLDAGS--IVLLS---PLGHSPTG-ETFNLDMEDVATSVAISLKAD--KLIYFTLSP----------GISDPDG 211 (429)
T ss_pred HHHHHHHHHCCC--eEEEC---CcccCCCC-CEEEeCHHHHHHHHHHHcCCC--EEEEEeCCC----------cccCCCC
Confidence 677888999998 43333 32234444 3444 444444333333321 599999974 5554345
Q ss_pred ccccH---HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeeehh
Q 020319 238 VIMND---ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 238 ~IdND---~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
.+... +.++.|.+. + -.+||=+.|.+..++| ++|-..+-|++..
T Consensus 212 ~~i~~i~~~~~~~l~~~----------~--~~~~~~~kl~~a~~a~-~~gv~~v~i~~g~ 258 (429)
T TIGR01890 212 TLAAELSPQEVESLAER----------L--GSETTRRLLSAAVKAC-RGGVHRSHIVSYA 258 (429)
T ss_pred CCcccCCHHHHHHHHHh----------c--cCCCcHHHHHHHHHHH-HcCCCeEEEECCC
Confidence 43322 223333322 1 1467667777777777 4677788887764
No 229
>PRK06256 biotin synthase; Validated
Probab=42.78 E-value=1e+02 Score=29.55 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=35.3
Q ss_pred eE-ecchhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeE
Q 020319 151 YR-LGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (327)
Q Consensus 151 ~r-~sid~~l~~ev~~~~~lGI~sVlLFgv-i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~V 215 (327)
|+ ++.+ +++++++++.+.|+..+.|..- -.+..+ +---+.+.++.||+. +++-+
T Consensus 88 ~~~~s~e-eI~~~~~~~~~~g~~~~~l~~~g~~p~~~---------~~~~~~e~i~~i~~~-~~i~~ 143 (336)
T PRK06256 88 YAWLDIE-ELIEAAKEAIEEGAGTFCIVASGRGPSGK---------EVDQVVEAVKAIKEE-TDLEI 143 (336)
T ss_pred ecCCCHH-HHHHHHHHHHHCCCCEEEEEecCCCCCch---------HHHHHHHHHHHHHhc-CCCcE
Confidence 55 5875 7999999999999988876531 111101 002467789999887 55543
No 230
>PRK14017 galactonate dehydratase; Provisional
Probab=42.75 E-value=3.4e+02 Score=26.74 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCc-ccc-cCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCCc-----
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSP-TGD-EAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGH----- 229 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~-~Gs-~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshGH----- 229 (327)
+++++++++++.|.+.+.+= +. .|+. .+. ... .--.+-|+++++.+ |++-++.|.+ ..||-..-
T Consensus 127 ~~~~~a~~~~~~Gf~~~KiK--v~--~~~~~~~~~~~~---~~d~~~i~avr~~~g~~~~l~vDaN-~~w~~~~A~~~~~ 198 (382)
T PRK14017 127 DVAEAARARVERGFTAVKMN--GT--EELQYIDSPRKV---DAAVARVAAVREAVGPEIGIGVDFH-GRVHKPMAKVLAK 198 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEc--Cc--CCccccccHHHH---HHHHHHHHHHHHHhCCCCeEEEECC-CCCCHHHHHHHHH
Confidence 58899999999999999883 11 0110 000 000 11256788999999 6899999997 66764311
Q ss_pred ----ce--eecCCCccccHHHHHHHHHH----------------HHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCCC
Q 020319 230 ----DG--IVREDGVIMNDETVHQLCKQ----------------AVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGFQ 286 (327)
Q Consensus 230 ----cG--Il~~~G~IdND~Tv~~Lak~----------------Als~A~-AGADiVAPSDMMDGRV~aIR~aLD~~Gf~ 286 (327)
.| .+.|-=..+|-+.+..|.++ .....+ .++|+|-|-=+.-|=|...++..+-+--.
T Consensus 199 ~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 278 (382)
T PRK14017 199 ELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAY 278 (382)
T ss_pred hhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 12 22111011333444444441 222223 35999999988888777766666555444
Q ss_pred Cceeeehh
Q 020319 287 HVSIMSYT 294 (327)
Q Consensus 287 ~v~IMSYS 294 (327)
++.+|.++
T Consensus 279 gi~~~~h~ 286 (382)
T PRK14017 279 DVALAPHC 286 (382)
T ss_pred CCeEeecC
Confidence 55555443
No 231
>PRK07534 methionine synthase I; Validated
Probab=42.74 E-value=1.5e+02 Score=29.44 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=75.4
Q ss_pred hHHHHHH-HHHHcCCCeEEE--eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC----CeeEEeeecccCCCCCCcc
Q 020319 158 GLVQEVA-KARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP----DLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 158 ~l~~ev~-~~~~lGI~sVlL--Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP----dl~VitDVcLc~YTshGHc 230 (327)
++++++. +-++.|-.-|.- |+.-+..++. .|++ ..-+.+..+|+++.|+..- +.+|..++ .||...-+
T Consensus 45 e~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~-~~~~-~~~~~l~~~av~lAr~a~~~~~~~~~VaGsI--GP~g~~l~- 119 (336)
T PRK07534 45 DNITALHQGFVDAGSDIILTNSFGGTAARLKL-HDAQ-DRVHELNRAAAEIAREVADKAGRKVIVAGSV--GPTGEIME- 119 (336)
T ss_pred HHHHHHHHHHHHhcCCEEEecCcccCHHHHHh-cCcH-HHHHHHHHHHHHHHHHHHHhcCCccEEEEec--CCCccccC-
Confidence 4666666 578899665543 4431111111 1211 1124677888888887752 46787764 46655432
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCC
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEG 284 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~G 284 (327)
..|.++-++-++....|+-.++++|+|++.=--|.+ --+.++.+++.+.|
T Consensus 120 ----~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~ 170 (336)
T PRK07534 120 ----PMGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAG 170 (336)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcC
Confidence 234566677888888999999999999999998888 44556666665543
No 232
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=42.60 E-value=18 Score=34.03 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCC-eeEEeeecccCCCCCCc----ceeecCCCccccHHHHH--------HHHHHHHHHHHcCCCeecC
Q 020319 199 VPRTIWLLKDRYPD-LVIYTDVALDPYSSDGH----DGIVREDGVIMNDETVH--------QLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 199 V~rAIr~iK~~fPd-l~VitDVcLc~YTshGH----cGIl~~~G~IdND~Tv~--------~Lak~Als~A~AGADiVAP 265 (327)
+.+|++.+|+++.+ ..|+. .+..|||.-.| ..++. ..+.+.+.++ .+.+.+-.+.++|+|+|.-
T Consensus 111 ~l~a~~~l~~~~~~~~~v~g-~~~gP~t~a~~l~g~~~~~~--~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i 187 (330)
T cd03465 111 LLEAIRLLKEELGDRVPVIG-AVGGPFTLASLLMGASKFLM--LLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYI 187 (330)
T ss_pred HHHHHHHHHHHhCCCeeeec-cCCCHHHHHHHHHhHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 67789999999985 54444 56788887643 22221 1233333333 3445566677789999987
Q ss_pred CCC
Q 020319 266 SDM 268 (327)
Q Consensus 266 SDM 268 (327)
.|-
T Consensus 188 ~d~ 190 (330)
T cd03465 188 SDP 190 (330)
T ss_pred eCC
Confidence 774
No 233
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=42.37 E-value=1.4e+02 Score=26.03 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccc
Q 020319 161 QEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIM 240 (327)
Q Consensus 161 ~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~Id 240 (327)
+++.++.+.|+..+.+|+......+ | .....+.++.+++. +++-|++ +|-|
T Consensus 117 ~e~~~~~~~~~d~v~~~~~~~~~~~---~------~~~~~~~i~~~~~~-~~~~i~~------------------~GGI- 167 (202)
T cd04726 117 EKRAKLLKLGVDIVILHRGIDAQAA---G------GWWPEDDLKKVKKL-LGVKVAV------------------AGGI- 167 (202)
T ss_pred HHHHHHHHCCCCEEEEcCccccccc---C------CCCCHHHHHHHHhh-cCCCEEE------------------ECCc-
Confidence 3444466677777777653221111 1 11234677777765 3433332 2445
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeec
Q 020319 241 NDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 241 ND~Tv~~Lak~Als~A~AGADiVA 264 (327)
|.+++. ...++|||.|.
T Consensus 168 ~~~~i~-------~~~~~Gad~vv 184 (202)
T cd04726 168 TPDTLP-------EFKKAGADIVI 184 (202)
T ss_pred CHHHHH-------HHHhcCCCEEE
Confidence 345544 44588999664
No 234
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=42.30 E-value=1.7e+02 Score=26.50 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=31.8
Q ss_pred HHH-HHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 159 LVQ-EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 159 l~~-ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
|.. .++.+.+.| .+|.|+|--+ +.+.++.+.|++.||.+.|..
T Consensus 36 l~~~l~~~~~~~~-~~vfllG~~~---------------~v~~~~~~~l~~~yP~l~i~g 79 (177)
T TIGR00696 36 LMEELCQRAGKEK-LPIFLYGGKP---------------DVLQQLKVKLIKEYPKLKIVG 79 (177)
T ss_pred HHHHHHHHHHHcC-CeEEEECCCH---------------HHHHHHHHHHHHHCCCCEEEE
Confidence 554 444566677 6778888411 678899999999999998765
No 235
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.20 E-value=46 Score=31.39 Aligned_cols=54 Identities=30% Similarity=0.517 Sum_probs=43.6
Q ss_pred CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 141 ~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+..|..+||++- ..|+..++++|.+.|.|||. . . . | ..-|+.||.=||++-+|.
T Consensus 110 ~~~i~~iPG~~T-------psEi~~A~~~Ga~~vKlFPA-~-~---------~---G--~~~ikal~~p~p~i~~~p 163 (222)
T PRK07114 110 RRKVPYSPGCGS-------LSEIGYAEELGCEIVKLFPG-S-V---------Y---G--PGFVKAIKGPMPWTKIMP 163 (222)
T ss_pred HcCCCEeCCCCC-------HHHHHHHHHCCCCEEEECcc-c-c---------c---C--HHHHHHHhccCCCCeEEe
Confidence 568999999943 56899999999999999994 1 1 1 3 567999999999977765
No 236
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=42.01 E-value=2.1e+02 Score=30.73 Aligned_cols=133 Identities=19% Similarity=0.180 Sum_probs=74.6
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEE--ee----ecc
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY--TD----VAL 221 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi--tD----VcL 221 (327)
++-.|++.+ +.+..++.+-+.|+.++=..|= +.-|. + .-+-.+.+ ...||.|++..|+.-+. +- |..
T Consensus 19 ~~~tr~~~~-d~l~ia~~ld~~G~~siE~~GG---atf~~-~-~~~~~e~p-~e~lr~l~~~~~~~~lqml~Rg~n~vg~ 91 (593)
T PRK14040 19 LFATRLRLD-DMLPIAAKLDKVGYWSLESWGG---ATFDA-C-IRFLGEDP-WERLRELKKAMPNTPQQMLLRGQNLLGY 91 (593)
T ss_pred ccccccCHH-HHHHHHHHHHHcCCCEEEecCC---cchhh-h-ccccCCCH-HHHHHHHHHhCCCCeEEEEecCcceecc
Confidence 445588885 6999999999999999988431 00110 0 00111122 57899999999985543 21 222
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCCCceeeeh--hhh
Q 020319 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSY--TAK 296 (327)
Q Consensus 222 c~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMM---DGRV~aIR~aLD~~Gf~~v~IMSY--SAK 296 (327)
+.|. |..++...+.| +++|.|+|--.|=+ +....+|+.+-+ +|+...+-++| +.+
T Consensus 92 ~~yp----------------ddvv~~~v~~a---~~~Gid~~rifd~lnd~~~~~~ai~~ak~-~G~~~~~~i~yt~~p~ 151 (593)
T PRK14040 92 RHYA----------------DDVVERFVERA---VKNGMDVFRVFDAMNDPRNLETALKAVRK-VGAHAQGTLSYTTSPV 151 (593)
T ss_pred ccCc----------------HHHHHHHHHHH---HhcCCCEEEEeeeCCcHHHHHHHHHHHHH-cCCeEEEEEEEeeCCc
Confidence 2221 23334333333 46788876554433 455556666653 56654444577 555
Q ss_pred hhccccchhHH
Q 020319 297 YASSFYGPFRE 307 (327)
Q Consensus 297 yASsfYGPFRd 307 (327)
|.-.||--+=+
T Consensus 152 ~~~~~~~~~a~ 162 (593)
T PRK14040 152 HTLQTWVDLAK 162 (593)
T ss_pred cCHHHHHHHHH
Confidence 55555554433
No 237
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.82 E-value=1.9e+02 Score=29.07 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYS 225 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgv-----------i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YT 225 (327)
...+-++.+.+.|...|-|-+- ..+.-+|+.|..--|---++.+.|++||+++ ||..|..=+. +|.
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis--~~~ 222 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFS--QWK 222 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC--ccc
Confidence 3555566788899999988631 2344678888777777788889999999999 5777776555 343
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 226 shGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
.. +. ..+.| .+-+++ .+.+-.+.++|+|+|--|.
T Consensus 223 ~~-~~--~~~~g-~~~~e~----~~~~~~l~~~gvd~i~vs~ 256 (361)
T cd04747 223 QQ-DY--TARLA-DTPDEL----EALLAPLVDAGVDIFHCST 256 (361)
T ss_pred cc-cc--ccCCC-CCHHHH----HHHHHHHHHcCCCEEEecC
Confidence 21 11 11112 233344 3344445678999986544
No 238
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=41.76 E-value=42 Score=32.33 Aligned_cols=63 Identities=29% Similarity=0.405 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHH---------------HHHHHCCCCCceeeehhhhhhcccc
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIR---------------AALDAEGFQHVSIMSYTAKYASSFY 302 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVA-PSDMMDGRV~aIR---------------~aLD~~Gf~~v~IMSYSAKyASsfY 302 (327)
+-|+.=+.|...|..+.++|||+++ |..-|-=-.-.|+ +++...|+++|+++.=-.--.+.||
T Consensus 56 ~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY 134 (230)
T COG1794 56 EWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFY 134 (230)
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCceeEEeeccchHHhHHH
Confidence 3466778999999999999999886 4444432222222 3444569999999976556678887
No 239
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=41.70 E-value=33 Score=35.48 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 198 LVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 198 lV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
-+.++|+.+|+..||++|+.|=|--||+..
T Consensus 176 ~I~~~i~~vk~~~p~~iifVDNCYGEFvE~ 205 (403)
T PF06838_consen 176 EIKEIIKFVKEINPDVIIFVDNCYGEFVET 205 (403)
T ss_dssp HHHHHHHHHHHH-TTSEEEEE-TTTTTTSS
T ss_pred HHHHHHHHHHhhCCCeEEEEeCCcceeccc
Confidence 367899999999999999999999999764
No 240
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=41.65 E-value=1.5e+02 Score=26.99 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=50.8
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC--CeeEEeeecccCCCCCCcc
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP--dl~VitDVcLc~YTshGHc 230 (327)
.|++..+.+.++++.++|+++|=||..-|...+.. -+-...++.+|+.+- +|-|. +..||..
T Consensus 6 ~~~~~~~~~~~~~~~~~G~~~vel~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~gl~ls---~h~p~~~---- 69 (273)
T smart00518 6 VSAAGGLYKAFIEAVDIGARSFQLFLGNPRSWKGV---------RLSEETAEKFKEALKENNIDVS---VHAPYLI---- 69 (273)
T ss_pred EcccCcHhHHHHHHHHcCCCEEEEECCCCCCCCCC---------CCCHHHHHHHHHHHHHcCCCEE---EECCcee----
Confidence 35545688899999999999999997533211111 111223344443332 23322 1234420
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
-+...+ .-.-+++++.|-+..-.-++-||++|.
T Consensus 70 nl~s~d-~~~r~~~~~~l~~~i~~A~~lGa~~vv 102 (273)
T smart00518 70 NLASPD-KEKVEKSIERLIDEIKRCEELGIKALV 102 (273)
T ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 111111 112356777777777667777998665
No 241
>PLN02826 dihydroorotate dehydrogenase
Probab=41.55 E-value=2e+02 Score=29.47 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeec
Q 020319 158 GLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgv 179 (327)
++.+.++.+.+.|+..|+++-.
T Consensus 277 di~~ia~~a~~~G~dGIi~~NT 298 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNT 298 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcc
Confidence 3566666788889999888763
No 242
>PLN02433 uroporphyrinogen decarboxylase
Probab=41.21 E-value=15 Score=35.62 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcceeec--C------CCccccHHHHHHHHH--------HHHHHHHcC
Q 020319 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVR--E------DGVIMNDETVHQLCK--------QAVSQARAG 259 (327)
Q Consensus 197 glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHcGIl~--~------~G~IdND~Tv~~Lak--------~Als~A~AG 259 (327)
..+.+||+.||+++++ +.|+. .|..|||.-++.---+ . .-...|-+-++.|.+ -+..|.+||
T Consensus 114 ~~~leai~~l~~~~~~~v~iig-~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaG 192 (345)
T PLN02433 114 PFVGEALKILRKEVGNEAAVLG-FVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAG 192 (345)
T ss_pred HHHHHHHHHHHHHhCCCCceee-eCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567899999999986 66665 6788999877542100 0 012234444444433 444677799
Q ss_pred CCeecCCCCCCc
Q 020319 260 ADVVSPSDMMDG 271 (327)
Q Consensus 260 ADiVAPSDMMDG 271 (327)
||++.=.|..-|
T Consensus 193 a~~i~i~d~~~~ 204 (345)
T PLN02433 193 AQVVQIFDSWAG 204 (345)
T ss_pred CCEEEEecCccc
Confidence 999866664443
No 243
>PLN02229 alpha-galactosidase
Probab=41.02 E-value=2e+02 Score=30.03 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=70.7
Q ss_pred eEecchhhHHHHHHH------HHHcCCCeEEEeecCCCCCCCcccccCcC----CCCcHHHHHHHHHHHCCCeeEEeeec
Q 020319 151 YRLGWRHGLVQEVAK------ARDVGVNSVVLFPKVPDALKSPTGDEAYN----DNGLVPRTIWLLKDRYPDLVIYTDVA 220 (327)
Q Consensus 151 ~r~sid~~l~~ev~~------~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n----~~glV~rAIr~iK~~fPdl~VitDVc 220 (327)
|...+++.++++..+ +.++|.+-|.|=--=-...+|+.|.--.| |+| +..-...|.++==...|++|..
T Consensus 73 ~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G-~k~ladyiH~~GlKfGIy~d~G 151 (427)
T PLN02229 73 FACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSG-IKLLADYVHSKGLKLGIYSDAG 151 (427)
T ss_pred hCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCc-HHHHHHHHHHCCCceEEeccCC
Confidence 344455555555544 47888888876110001236777765444 445 2334455555545688888765
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec------CCCCCCchHHHHHHHHHHCCC
Q 020319 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS------PSDMMDGRVGAIRAALDAEGF 285 (327)
Q Consensus 221 Lc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA------PSDMMDGRV~aIR~aLD~~Gf 285 (327)
. +|=.|.-|-+ |.-.. -|-.+|+=|.|.|= +..-+..++.++|+||+..|-
T Consensus 152 ~--~TC~~~pGS~---g~e~~---------DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGR 208 (427)
T PLN02229 152 V--FTCQVRPGSL---FHEVD---------DADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGR 208 (427)
T ss_pred C--cccCCCCCCc---cHHHH---------HHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCC
Confidence 3 2323443433 11122 27779999999873 333367889999999999986
No 244
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=40.83 E-value=3.1e+02 Score=26.23 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcC-------CCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcc
Q 020319 159 LVQEVAKARDVG-------VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 159 l~~ev~~~~~lG-------I~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHc 230 (327)
+...++++.+.+ -+-+++||. - + ..+=+...-++.+.+.+| ++-+..-+.-++=...|+.
T Consensus 171 ~~sml~~~l~~~~~~~~~~~~v~L~~g~-R----~-------~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~ 238 (307)
T PLN03116 171 FRGFLRRMFMEDVPAFKFGGLAWLFLGV-A----N-------SDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGK 238 (307)
T ss_pred HHHHHHHHHhhccccccCCCcEEEEEec-C----C-------cccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCc
Confidence 455555555444 245678885 1 1 112355667888888998 5654432222221223444
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCC--eecCCCCCCchHHHHHHHHHHCCC
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGAD--VVSPSDMMDGRVGAIRAALDAEGF 285 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGAD--iVAPSDMMDGRV~aIR~aLD~~Gf 285 (327)
|.+. +.+.+ +.+..+.....+++ +-.|..||+.-..++++.|.+.|.
T Consensus 239 g~v~--~~l~~------~~~~~~~~~~~~~~vYiCGp~~mv~~v~~~L~~~~~~~g~ 287 (307)
T PLN03116 239 MYVQ--DKIEE------YSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKRVAEERGE 287 (307)
T ss_pred cchh--hHHHH------HHHHHHhhhcCCcEEEEeCCHHHHHHHHHHHHHHHHHcCc
Confidence 5442 12222 11111222234554 447999999999999999998885
No 245
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.72 E-value=45 Score=31.72 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=48.8
Q ss_pred ceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCc
Q 020319 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (327)
Q Consensus 150 v~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGH 229 (327)
.+|..++ .+.+.++.+.+.|+..|.| +|..|. ..|+ -+.+-++.||+.+| + +..-|+|
T Consensus 135 a~r~~~~-~l~~~~~~~~~~g~~~i~l--------~Dt~G~--~~P~-~v~~~~~~~~~~~~-~---------~i~~H~H 192 (262)
T cd07948 135 SFRSDLV-DLLRVYRAVDKLGVNRVGI--------ADTVGI--ATPR-QVYELVRTLRGVVS-C---------DIEFHGH 192 (262)
T ss_pred eCCCCHH-HHHHHHHHHHHcCCCEEEE--------CCcCCC--CCHH-HHHHHHHHHHHhcC-C---------eEEEEEC
Confidence 4454554 5777788888888886543 344442 2333 36667888888776 2 2345777
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 230 cGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
+-. | -+ ..-++.-.+||||+|--|-
T Consensus 193 n~~----G----la-----~an~~~a~~aG~~~vd~s~ 217 (262)
T cd07948 193 NDT----G----CA-----IANAYAALEAGATHIDTTV 217 (262)
T ss_pred CCC----C----hH-----HHHHHHHHHhCCCEEEEec
Confidence 532 2 00 1234555689999875543
No 246
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=40.56 E-value=1.3e+02 Score=27.35 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC--CeeEEeeecccCCCCCCcceeecC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP--dl~VitDVcLc~YTshGHcGIl~~ 235 (327)
.+.+.++.+.++|+..|=|++..+.. +.++ ....-++.+|+..- .|-|. .+++.+..=...++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~---------~~~~-~~~~~~~~l~~~~~~~gl~v~---s~~~~~~~~~~~~~~~ 80 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHA---------FAPD-LKAGGIKQIKALAQTYQMPII---GYTPETNGYPYNMMLG 80 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccc---------cccc-cCchHHHHHHHHHHHcCCeEE---EecCcccCcCccccCC
Confidence 37899999999999999998642211 1111 11223444444332 34332 2222111000122221
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
+ .-.-+++++.+.+..-.-++.||.+|
T Consensus 81 ~-~~~r~~~~~~~~~~i~~a~~lGa~~i 107 (275)
T PRK09856 81 D-EHMRRESLDMIKLAMDMAKEMNAGYT 107 (275)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 1 12235677777777777788899984
No 247
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.50 E-value=1e+02 Score=30.44 Aligned_cols=105 Identities=26% Similarity=0.234 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
.+.++.+.+.|+..|-+|-...+ .-.+.++|+.+|+.--++.+ -++ .+|
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e-------------~~~~~~~i~~ak~~G~~v~~--~l~----~a~------------ 139 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTE-------------ADVSEQHIGLARELGMDTVG--FLM----MSH------------ 139 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecch-------------HHHHHHHHHHHHHCCCeEEE--EEE----ecc------------
Confidence 46789999999999887742111 11468899999987433222 111 111
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH---HCCC--CCceeeehhhhh
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD---AEGF--QHVSIMSYTAKY 297 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD---~~Gf--~~v~IMSYSAKy 297 (327)
-.|.+.|++++-...++|||.|.-.|+.= -+|.+||+.|+ .-|| ++..=|+++.-.
T Consensus 140 --~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANsl 208 (337)
T PRK08195 140 --MAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSL 208 (337)
T ss_pred --CCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHH
Confidence 12456677777777889999999888753 56888898883 1244 444446555433
No 248
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=40.32 E-value=1e+02 Score=30.76 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
..|++.|.++|+.-|- +|+-..| ....++.+|.+| +..++||..
T Consensus 86 ~~Ea~~L~~~GvDiID-------------~Te~lrp---ad~~~~~~K~~f-~~~fmad~~------------------- 129 (293)
T PRK04180 86 FVEAQILEALGVDYID-------------ESEVLTP---ADEEYHIDKWDF-TVPFVCGAR------------------- 129 (293)
T ss_pred HHHHHHHHHcCCCEEe-------------ccCCCCc---hHHHHHHHHHHc-CCCEEccCC-------------------
Confidence 7889999999998761 2333333 568899999999 888888753
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
|++ .|+.-.++|||+|..-
T Consensus 130 ----~l~----EAlrai~~GadmI~Tt 148 (293)
T PRK04180 130 ----NLG----EALRRIAEGAAMIRTK 148 (293)
T ss_pred ----CHH----HHHHHHHCCCCeeecc
Confidence 222 6888899999999987
No 249
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.23 E-value=2.8e+02 Score=26.55 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHcCCCeEEE-ee
Q 020319 158 GLVQEVAKARDVGVNSVVL-FP 178 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlL-Fg 178 (327)
..++.+..+.+.|+..+=| ||
T Consensus 27 ~~~~~~~~l~~~Gad~iElGiP 48 (258)
T PRK13111 27 TSLEIIKALVEAGADIIELGIP 48 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCC
Confidence 4677788899999988766 44
No 250
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=40.09 E-value=32 Score=32.79 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcceeecCC----CccccHHHHHHHH--------HHHHHHHHcCCCee
Q 020319 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVRED----GVIMNDETVHQLC--------KQAVSQARAGADVV 263 (327)
Q Consensus 197 glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHcGIl~~~----G~IdND~Tv~~La--------k~Als~A~AGADiV 263 (327)
..+-+||+.+|+++++ ..|+. .+-.|||.-++ ++... ....|-+.++.|. +-+..+.++|||+|
T Consensus 112 ~~v~eai~~l~~~~~~~~pvig-~~~gP~Tla~~--l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i 188 (326)
T cd03307 112 PTVLEAIKILKEKYGEEVPVIG-GMTGPASLASH--LAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADII 188 (326)
T ss_pred HHHHHHHHHHHHHcCCcceeeC-CCCCHHHHHHH--HHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 3467899999999984 55554 34678877654 22100 1223444444433 34556788999999
Q ss_pred cCCCCCCch------------HHHHHHHHHHCCCCCceeeehhhhhhccccchhHH
Q 020319 264 SPSDMMDGR------------VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (327)
Q Consensus 264 APSDMMDGR------------V~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPFRd 307 (327)
.-+|..=+. .-.+|+.+|...- ..++-|..+..+.++-=+++
T Consensus 189 ~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~--~~~ilh~cG~~~~~l~~~~~ 242 (326)
T cd03307 189 TIADPTASPELISPEFYEEFALPYHKKIVKELHG--CPTILHICGNTTPILEYIAQ 242 (326)
T ss_pred EecCCCccccccCHHHHHHHHHHHHHHHHHHHhc--CCcEEEECCCChhHHHHHHH
Confidence 777755333 4566777766522 34444555655444443333
No 251
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=40.07 E-value=47 Score=33.46 Aligned_cols=138 Identities=20% Similarity=0.346 Sum_probs=81.8
Q ss_pred CCCcccCCCCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-----CcccCCCCC-----ceEecc--hhhHH
Q 020319 93 GTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-----DTPIGAMPG-----CYRLGW--RHGLV 160 (327)
Q Consensus 93 g~p~~~~~~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-----~~~I~SMPG-----v~r~si--d~~l~ 160 (327)
|.=+|-|-+|.- - +-.++|+.+.++-. .+=.|+.-=+.--.. .+...|=|. -||+.. ..+.+
T Consensus 160 GADiVAPSdMMD----G-rV~aIR~aLd~~g~-~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAl 233 (324)
T PF00490_consen 160 GADIVAPSDMMD----G-RVGAIREALDEAGF-SDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREAL 233 (324)
T ss_dssp T-SEEEE-S--T----T-HHHHHHHHHHHTTC-TTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHH
T ss_pred CCCeeccccccC----C-HHHHHHHHHHhCCC-CCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHH
Confidence 434555555531 1 23578888888754 345565554432111 123333332 234322 12577
Q ss_pred HHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec---CCC
Q 020319 161 QEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR---EDG 237 (327)
Q Consensus 161 ~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~---~~G 237 (327)
.|++.-++-|-.-+|+=|- .+.-.-|+.+|++| ++-|.+ |.-.|--..+. ++|
T Consensus 234 re~~~D~~EGAD~lMVKPa-----------------l~YLDIi~~~k~~~-~~P~~a------YqVSGEYaMikaAa~~G 289 (324)
T PF00490_consen 234 REAELDIEEGADILMVKPA-----------------LPYLDIIRRVKERF-DLPVAA------YQVSGEYAMIKAAAQNG 289 (324)
T ss_dssp HHHHHHHHTT-SEEEEESS-----------------GGGHHHHHHHHHHC-TS-EEE------EETHHHHHHHHHHHHTT
T ss_pred HHhhhhHhhCCCEEEeecc-----------------hhHHHHHHHHHHhc-CCCEEE------EEehHHHHHHHHHHHCC
Confidence 8888888999999998654 34566899999999 666666 99999888875 478
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
.+|-++. +.+.-++.-+||||+|
T Consensus 290 ~~d~~~~---~~Esl~~~kRAGAd~I 312 (324)
T PF00490_consen 290 WIDEKRV---VLESLLSIKRAGADII 312 (324)
T ss_dssp SS-HHHH---HHHHHHHHHHHT-SEE
T ss_pred CcchhhH---HHHHHHHHHHcCCCEE
Confidence 8885543 3356678999999986
No 252
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=40.04 E-value=55 Score=31.39 Aligned_cols=91 Identities=9% Similarity=-0.010 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccccCcCCCCc---HHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGL---VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~-~KD~~Gs~A~n~~gl---V~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
.+.++.+.+.|++.|-+|--+++. .+...+ .+.+.. +.+.|+..|+.--++.+..--.-|+|..
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~---~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~--------- 144 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR---KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRD--------- 144 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcC---------
Confidence 567888999999999998643331 122212 223333 3334555555543332222214456621
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD 270 (327)
+.+.+.+.+-...++|||.|.=.|+.=
T Consensus 145 --------~~~~~~~~~~~~~~~G~~~i~l~DT~G 171 (280)
T cd07945 145 --------SPDYVFQLVDFLSDLPIKRIMLPDTLG 171 (280)
T ss_pred --------CHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 124666666667889999999988764
No 253
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=39.90 E-value=45 Score=30.88 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCC-CcHHHHHHHHHHHCCCeeEEeeeccc
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYPDLVIYTDVALD 222 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~-glV~rAIr~iK~~fPdl~VitDVcLc 222 (327)
.|.++++++.+.|+..+=+ -+. | | .|.|| +.=.+.|+.||+..|++.+ ||-|=
T Consensus 20 ~l~~~~~~l~~~~~~~~H~-Dim-----D--g--~fvpn~~~G~~~v~~lr~~~~~~~l--DvHLm 73 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHV-DVM-----D--G--HFVPNLSFGPPVVKSLRKHLPNTFL--DCHLM 73 (228)
T ss_pred HHHHHHHHHHHcCCCEEEE-ecc-----c--C--ccCCCcCcCHHHHHHHHhcCCCCCE--EEEEC
Confidence 3889999999999987544 221 2 1 24454 4446899999998888776 76663
No 254
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=39.86 E-value=2.3e+02 Score=26.66 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeec
Q 020319 158 GLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgv 179 (327)
++.+.++.+.+.|+..|.+|..
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt 188 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINT 188 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECC
Confidence 4677788899999999999864
No 255
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=39.32 E-value=1.5e+02 Score=29.31 Aligned_cols=94 Identities=17% Similarity=0.311 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgv-----------i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
..+-++.+.+.|...|-|-+- ..+.-.|+.|-.-.|---++.+.|+.||++. +..|..=+..++|..
T Consensus 144 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~- 221 (337)
T PRK13523 144 FKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHP- 221 (337)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCC-
Confidence 344455677899999988532 1234567767554455567778899999986 444444444444421
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
+| + |++...+.+-.+.++|+|.|.=|.
T Consensus 222 --------~G-~----~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 222 --------GG-L----TVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred --------CC-C----CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 12 2 344445566667789999987654
No 256
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=39.21 E-value=41 Score=34.27 Aligned_cols=50 Identities=28% Similarity=0.420 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHcCCCeecC--CCCCC------c-------------hHHHHHHHHHHCCCCCceeeehh
Q 020319 244 TVHQLCKQAVSQARAGADVVSP--SDMMD------G-------------RVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 244 Tv~~Lak~Als~A~AGADiVAP--SDMMD------G-------------RV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
|+=--..||+.-|+|||++|+| +-|.| | -|..|.+.++.+|| ++-||.=|
T Consensus 160 TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~-~T~Im~AS 230 (391)
T PRK12309 160 TLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGY-KTEVMGAS 230 (391)
T ss_pred eeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCC-CcEEEecc
Confidence 3333456999999999999999 23333 1 37778888888888 67888654
No 257
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=39.05 E-value=2.9e+02 Score=26.26 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcceeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
.+.+.++.+++.|+..+.++|...+ -..=..-=-.+.++..++... ++-|++=|
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~GstGE--------~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv----------------- 81 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGE--------FFSLTPAEYEQVVEIAVSTAKGKVPVYTGV----------------- 81 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcC--------cccCCHHHHHHHHHHHHHHhCCCCcEEEec-----------------
Confidence 5888899999999999999996322 111111112334444444332 34454311
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCee---cCCCC---CCchHHHHHHHHHHCCCCCceeeehh
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVV---SPSDM---MDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiV---APSDM---MDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
|. .-+++++ +|-...++|||.| .|.-. -+|-+...++..+.. +++||=|-
T Consensus 82 ~~-~t~~ai~----~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~---~~pvilYn 137 (296)
T TIGR03249 82 GG-NTSDAIE----IARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCEST---DLGVIVYQ 137 (296)
T ss_pred Cc-cHHHHHH----HHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcc---CCCEEEEe
Confidence 11 1234443 5556678899963 34321 167777777777754 57888885
No 258
>PLN02489 homocysteine S-methyltransferase
Probab=39.04 E-value=2.1e+02 Score=28.25 Aligned_cols=149 Identities=14% Similarity=0.225 Sum_probs=87.0
Q ss_pred hHHHHHH-HHHHcCCCeEEE---eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC---------------------CC
Q 020319 158 GLVQEVA-KARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---------------------PD 212 (327)
Q Consensus 158 ~l~~ev~-~~~~lGI~sVlL---Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f---------------------Pd 212 (327)
++++++. +-++.|-. |+. |+.-+...++ .|-+...-+.+..+|+++.|++. .+
T Consensus 55 e~V~~vH~~yl~AGAd-vI~TnTy~a~~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 132 (335)
T PLN02489 55 HLIRKVHLDYLEAGAD-IIITASYQATIQGFES-RGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRP 132 (335)
T ss_pred HHHHHHHHHHHHhCCC-EEEecccccCHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCC
Confidence 4666666 57889987 443 4431111111 11100011347788888877653 25
Q ss_pred eeEEeeecccCCCCCCcceeecC--CC-ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCc
Q 020319 213 LVIYTDVALDPYSSDGHDGIVRE--DG-VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHV 288 (327)
Q Consensus 213 l~VitDVcLc~YTshGHcGIl~~--~G-~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v 288 (327)
.+|..+| -||-..=+.|--.. -| .+.-++-.+....|+-.++++|+|+|+=--|.+ --+.+|.+++.+.+-..-
T Consensus 133 ~~VaGsi--GP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p 210 (335)
T PLN02489 133 ILVAASI--GSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIP 210 (335)
T ss_pred cEEEEEc--CCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCe
Confidence 7788875 35554333322110 01 256677777788899899999999999999988 346677888877754445
Q ss_pred eeeehhhhhhcc-ccc-hhHHHhh
Q 020319 289 SIMSYTAKYASS-FYG-PFREALD 310 (327)
Q Consensus 289 ~IMSYSAKyASs-fYG-PFRdAa~ 310 (327)
.++|.+.+=-.. ..| |+.+++.
T Consensus 211 ~~iS~t~~~~~~l~~G~~~~~~~~ 234 (335)
T PLN02489 211 AWISFNSKDGVNVVSGDSLLECAS 234 (335)
T ss_pred EEEEEEeCCCCccCCCCcHHHHHH
Confidence 567777543221 223 4555553
No 259
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=38.94 E-value=1.6e+02 Score=27.40 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC--CeeEEeeecccCCCCCCcceeecCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP--dl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
++.+++++++.|+..|.+=-.+ |+ .++.-.+ +-++.|++... ++.++.+ .|....|.|-+
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~--------g~--~~~~~~~-~~~~~i~~~~~~~g~~liv~----~~~~Gvh~~~~--- 153 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNV--------GS--DTEWEQI-RDLGMIAEICDDWGVPLLAM----MYPRGPHIDDR--- 153 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEec--------CC--chHHHHH-HHHHHHHHHHHHcCCCEEEE----EeccCcccccc---
Confidence 5678999999999988774321 11 1111233 34555554321 2223322 23334454432
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
.++++..+++ ..+++|||+|.-+ .-|-+..+|+.....
T Consensus 154 ----~~~~~~~~~~---~a~~~GADyikt~--~~~~~~~l~~~~~~~ 191 (258)
T TIGR01949 154 ----DPELVAHAAR---LGAELGADIVKTP--YTGDIDSFRDVVKGC 191 (258)
T ss_pred ----cHHHHHHHHH---HHHHHCCCEEecc--CCCCHHHHHHHHHhC
Confidence 2344444443 4457999999987 345677888877643
No 260
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=38.73 E-value=1e+02 Score=29.62 Aligned_cols=66 Identities=26% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEE---eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCC
Q 020319 160 VQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlL---Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
.+++.++.+.|...|+| |+. -+.++++.+++.+|++.+++ -
T Consensus 193 ~eea~~A~~~gaD~I~ld~~~p~------------------~l~~~~~~~~~~~~~i~i~A------------------s 236 (272)
T cd01573 193 LEEALAAAEAGADILQLDKFSPE------------------ELAELVPKLRSLAPPVLLAA------------------A 236 (272)
T ss_pred HHHHHHHHHcCCCEEEECCCCHH------------------HHHHHHHHHhccCCCceEEE------------------E
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMM 269 (327)
|-| |-+++. .++++|+|.|+=|.+.
T Consensus 237 GGI-~~~ni~-------~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 237 GGI-NIENAA-------AYAAAGADILVTSAPY 261 (272)
T ss_pred CCC-CHHHHH-------HHHHcCCcEEEEChhh
No 261
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=38.68 E-value=5.1 Score=36.57 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEE----------eeecccCCCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY----------TDVALDPYSSD 227 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi----------tDVcLc~YTsh 227 (327)
++.+.++++.++|++-|+- +...+ ....... ..-.+.+|.|..-+.=.|++=. .|+.+..=...
T Consensus 113 ~i~~v~~~~~~~gl~vIlE-~~l~~----~~~~~~~-~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~ 186 (236)
T PF01791_consen 113 EIAAVVEECHKYGLKVILE-PYLRG----EEVADEK-KPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVE 186 (236)
T ss_dssp HHHHHHHHHHTSEEEEEEE-ECECH----HHBSSTT-HHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEE-EecCc----hhhcccc-cHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHH
Confidence 4555666677888876665 65221 1111111 2234556666665544444333 12222111122
Q ss_pred -----CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 228 -----GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 228 -----GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
|++||+--.|. |.+++.+-.++|+..-++|||.+.
T Consensus 187 ~~~~p~~~~Vk~sGGi--~~~~~~~~l~~a~~~i~aGa~~~G 226 (236)
T PF01791_consen 187 AAPVPGKVGVKASGGI--DAEDFLRTLEDALEFIEAGADRIG 226 (236)
T ss_dssp THSSTTTSEEEEESSS--SHHHHHHSHHHHHHHHHTTHSEEE
T ss_pred hcCCCcceEEEEeCCC--ChHHHHHHHHHHHHHHHcCChhHH
Confidence 88888865554 899999999999999999999854
No 262
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=38.42 E-value=2.7e+02 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVP 181 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~ 181 (327)
++.+.++.+.+.|+..|.+++.+.
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~ 249 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTL 249 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCcc
Confidence 477888888999999999998643
No 263
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=38.40 E-value=1.1e+02 Score=30.55 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
..|++.|.++|+.-| | .|+-..| ....++.+|.+| +..++||.
T Consensus 79 ~~Ea~~L~~~GvDiI-----------D--eTe~lrP---ade~~~~~K~~f-~vpfmad~-------------------- 121 (287)
T TIGR00343 79 FVEAQILEALGVDYI-----------D--ESEVLTP---ADWTFHIDKKKF-KVPFVCGA-------------------- 121 (287)
T ss_pred HHHHHHHHHcCCCEE-----------E--ccCCCCc---HHHHHHHHHHHc-CCCEEccC--------------------
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecC
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAP 265 (327)
.|++ .|+.-.++|||+|..
T Consensus 122 ---~~l~----EAlrai~~GadmI~T 140 (287)
T TIGR00343 122 ---RDLG----EALRRINEGAAMIRT 140 (287)
T ss_pred ---CCHH----HHHHHHHCCCCEEec
No 264
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=38.39 E-value=21 Score=34.18 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcce----------eecCCCccccHHHHHHH--------HHHHHHHHH
Q 020319 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDG----------IVREDGVIMNDETVHQL--------CKQAVSQAR 257 (327)
Q Consensus 197 glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHcG----------Il~~~G~IdND~Tv~~L--------ak~Als~A~ 257 (327)
..+-+||+.||+++++ ..|+ =.+..|||.-++-- ++. ..+.|-+-++.+ .+.+..+.+
T Consensus 112 ~~~leai~~l~~~~~~~~~i~-g~v~gP~Tla~~l~~~~~~~~~~~~~~--~l~~~Pe~v~~~l~~it~~~~~~~~~~ie 188 (335)
T cd00717 112 SYVYEAIKLTRKELPGEVPLI-GFAGAPWTLASYMIEGGGSKDFAKAKK--MMYTDPEAFHALLDKLTDATIEYLKAQIE 188 (335)
T ss_pred HHHHHHHHHHHHHcCCCceEE-eecCCHHHHHHHHHCCCCCccHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999999986 4444 34788998776421 111 122333444333 334455667
Q ss_pred cCCCeecCCCC
Q 020319 258 AGADVVSPSDM 268 (327)
Q Consensus 258 AGADiVAPSDM 268 (327)
||||+|.-.|.
T Consensus 189 aGad~i~i~d~ 199 (335)
T cd00717 189 AGAQAVQIFDS 199 (335)
T ss_pred hCCCEEEEeCc
Confidence 89998875543
No 265
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=38.23 E-value=76 Score=22.20 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=26.0
Q ss_pred eeeEEEeeCC-C--CcccCCCCCceEecch-hhHHHHHHHHHH
Q 020319 130 VYPLFIHEGE-E--DTPIGAMPGCYRLGWR-HGLVQEVAKARD 168 (327)
Q Consensus 130 I~PlFV~eg~-~--~~~I~SMPGv~r~sid-~~l~~ev~~~~~ 168 (327)
.||+.|+..+ + -..++.+||+.-.+-+ +++++.+++++.
T Consensus 1 ~Y~~~i~~~~~~~y~~~~pdlpg~~t~G~t~eea~~~~~eal~ 43 (48)
T PF03681_consen 1 KYPAIIEKDEDGGYVAYFPDLPGCFTQGDTLEEALENAKEALE 43 (48)
T ss_dssp EEEEEEEE-TSSSEEEEETTCCTCEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCeEEEEeCCccChhhcCCCHHHHHHHHHHHHH
Confidence 5899999733 3 3688999999988521 135555655554
No 266
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.17 E-value=1.1e+02 Score=30.23 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
-+++++++++.|..-|+|=- +++ .-+.++++.+|+.+|++.+.+ .|-
T Consensus 208 tl~ea~eal~~gaDiI~LDn--------------m~~-e~vk~av~~~~~~~~~v~iea------------------SGG 254 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDN--------------FPV-WQTQEAVQRRDARAPTVLLES------------------SGG 254 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCC--------------CCH-HHHHHHHHHHhccCCCEEEEE------------------ECC
Confidence 46799999999998888821 111 246788888888888765543 243
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
| |-++++ .||+.|+|+|+=+.+
T Consensus 255 I-~~~ni~-------~yA~tGvD~Is~gal 276 (289)
T PRK07896 255 L-TLDTAA-------AYAETGVDYLAVGAL 276 (289)
T ss_pred C-CHHHHH-------HHHhcCCCEEEeChh
Confidence 4 345554 588999999986643
No 267
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=37.97 E-value=67 Score=30.48 Aligned_cols=83 Identities=22% Similarity=0.207 Sum_probs=45.7
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcc
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHc 230 (327)
.++..+ .+.+.++++.+.|+..|-| +|..|..- |+ -+.+-++.+|+++| + +.--|+|+
T Consensus 144 ~~~~~~-~~~~~~~~~~~~Ga~~i~l--------~DT~G~~~--P~-~v~~lv~~l~~~~~-~---------~l~~H~Hn 201 (275)
T cd07937 144 PVHTLE-YYVKLAKELEDMGADSICI--------KDMAGLLT--PY-AAYELVKALKKEVG-L---------PIHLHTHD 201 (275)
T ss_pred CCCCHH-HHHHHHHHHHHcCCCEEEE--------cCCCCCCC--HH-HHHHHHHHHHHhCC-C---------eEEEEecC
Confidence 355553 4666677777777665433 33344321 22 25566777777766 1 23347775
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
-. | .=..-++.-.+|||++|-=|=.
T Consensus 202 d~----G---------lA~aN~laA~~aGa~~vd~sv~ 226 (275)
T cd07937 202 TS----G---------LAVATYLAAAEAGVDIVDTAIS 226 (275)
T ss_pred CC----C---------hHHHHHHHHHHhCCCEEEEecc
Confidence 32 2 1112355567899999864433
No 268
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=37.79 E-value=1.2e+02 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=27.1
Q ss_pred ccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc
Q 020319 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221 (327)
Q Consensus 188 ~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL 221 (327)
.|.+-+-..| .+.|+.||+.||+.-|+.|+=|
T Consensus 34 VG~~L~~~~G--~~~i~~lk~~~~~~~IflDlKl 65 (218)
T PRK13305 34 AGTILCLNEG--LGAVKALREQCPDKIIVADWKV 65 (218)
T ss_pred ECHHHHHHhC--HHHHHHHHHhCCCCEEEEEeec
Confidence 5777777778 4899999999999999999876
No 269
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.56 E-value=2.2e+02 Score=28.19 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHcCCCeE---EEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec
Q 020319 158 GLVQEVAKARDVGVNSV---VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sV---lLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~ 234 (327)
.+.+.++.+.+.|+..| ++||. |....+ -+.+.++.+.+.-|+-+-+-...+-|-|--.+-
T Consensus 144 ~~~~ai~~~~~~G~~~v~~dli~Gl-pgqt~~-----------~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~---- 207 (378)
T PRK05660 144 EAKRAAKLAQGLGLRSFNLDLMHGL-PDQSLE-----------EALDDLRQAIALNPPHLSWYQLTIEPNTLFGSR---- 207 (378)
T ss_pred HHHHHHHHHHHcCCCeEEEEeecCC-CCCCHH-----------HHHHHHHHHHhcCCCeEEeeccEeccCCccccc----
Confidence 46677788889999644 78994 643222 267788888887788777766666665554441
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeeehhhh
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
.....+.|+..+ +-..+.+.|.++||....|=.|+-+
T Consensus 208 ~~~~~~~~~~~~-------------------------~~~~~~~~L~~~Gy~~yei~~fa~~ 244 (378)
T PRK05660 208 PPVLPDDDALWD-------------------------IFEQGHQLLTAAGYQQYETSAYAKP 244 (378)
T ss_pred CCCCcCHHHHHH-------------------------HHHHHHHHHHHcCCcEeecccccCC
Confidence 111112122111 3445678888899988888888753
No 270
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=37.43 E-value=2.4e+02 Score=27.54 Aligned_cols=103 Identities=18% Similarity=0.326 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCC------CCCCcc-----cccCcCCCC-cHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPD------ALKSPT-----GDEAYNDNG-LVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~------~~KD~~-----Gs~A~n~~g-lV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
.++++.+.+.|+..|.+-|.=.. ..+... +.. +.+-| +...+|+.+++..+++-||+
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~-~~~~g~~t~~~l~~~~~~~~~ipIia---------- 260 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEY-FADWGIPTAASLLEVRSALPDLPLIA---------- 260 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccc-cccccccHHHHHHHHHHHcCCCcEEE----------
Confidence 57888899999999999773000 011111 111 11112 34567777777765555555
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-----CCCch----------HHHHHHHHHHCCCCCc
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-----MMDGR----------VGAIRAALDAEGFQHV 288 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSD-----MMDGR----------V~aIR~aLD~~Gf~~v 288 (327)
+|-|.|-.-+. ..-.+|||.|.=+. +++|. ...+|..|...|++++
T Consensus 261 --------sGGIr~~~dv~-------kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~~~m~~~G~~si 321 (326)
T cd02811 261 --------SGGIRNGLDIA-------KALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRTAMFLTGAKNL 321 (326)
T ss_pred --------ECCCCCHHHHH-------HHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 25555544332 22225999987665 33342 4455667777777654
No 271
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=37.31 E-value=1.5e+02 Score=34.52 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=77.2
Q ss_pred hhHHHHHH-HHHHcCCCeEEE--eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC--------CeeEEeeecccCCC
Q 020319 157 HGLVQEVA-KARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--------DLVIYTDVALDPYS 225 (327)
Q Consensus 157 ~~l~~ev~-~~~~lGI~sVlL--Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP--------dl~VitDVcLc~YT 225 (327)
.++++++. .-++.|-.-|.- |+.-+..+++ .|-+ ..-..+..+|+++.|+... ...|..+ +.||+
T Consensus 49 Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~~-yg~~-~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGs--IGP~g 124 (1178)
T TIGR02082 49 PEVIATIHRAYFEAGADIIETNTFNSTTISQAD-YDLE-DLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGS--MGPTN 124 (1178)
T ss_pred HHHHHHHHHHHHHHhchheecCCccCCHHHHhh-CCHH-HHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEE--eCCCC
Confidence 45777777 467888663222 6642222222 1111 1112455577777775542 3677776 45777
Q ss_pred CCCccee-ecCC--CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-----HHHHHHHHHHCCCCCceeee
Q 020319 226 SDGHDGI-VRED--GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-----VGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 226 shGHcGI-l~~~--G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGR-----V~aIR~aLD~~Gf~~v~IMS 292 (327)
..-..|- .... +.+.-|+-.+...+|+-.++++|+|++.---|.|-. +.++|+.+.+.|- +++||-
T Consensus 125 ~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~-~lPv~v 198 (1178)
T TIGR02082 125 KTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGR-ELPIMI 198 (1178)
T ss_pred CCccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCC-CCeEEE
Confidence 5322220 0001 135668888999999999999999999999999943 4455555544443 566663
No 272
>PRK12383 putative mutase; Provisional
Probab=36.87 E-value=65 Score=33.14 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=51.4
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCccccc---CcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCc
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~---A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGH 229 (327)
|+++.. ......+.+.|++.+.+ |.+.+-..-..++. +.+.+..+.+++.++|+.+++++..==+.+| ..||
T Consensus 228 y~~~p~-~~v~~~l~~~G~~v~~V-GKi~Di~s~~G~t~~~~~~~t~~~~~~~l~aL~~~~~dlvfvnl~~~D---~~GH 302 (406)
T PRK12383 228 YGVDPK-VQVPQKLYEAGVPVVLV-GKVADIVNNPYGVSWQNLVDTQRVMDITLDEFNTHPTAFICTNIQETD---LAGH 302 (406)
T ss_pred CCCCCc-chhhhHHHHcCCCEEEE-EEhHHeeccCCcccccccCCHHHHHHHHHHHHhcCCCCEEEEeccCCc---cccc
Confidence 355543 44555688899998888 65443222233444 4566789999999999887887776555555 4599
Q ss_pred ceee
Q 020319 230 DGIV 233 (327)
Q Consensus 230 cGIl 233 (327)
.+-+
T Consensus 303 ~~d~ 306 (406)
T PRK12383 303 AEDV 306 (406)
T ss_pred cCCH
Confidence 8866
No 273
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=36.80 E-value=78 Score=30.59 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHH--HHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLK--DRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK--~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
++.++++++.|..+||+=+. .+ +.+-.+.++.+..+ ..+ .+-|-..+ ||.|- .+|+
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s---~l---------~~~eni~~t~~v~~~a~~~-gv~Ve~El--------G~~gg-~ed~ 144 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGS---HL---------PFEENLALTKKVVEIAHAK-GVSVEAEL--------GTLGG-IEDG 144 (282)
T ss_pred HHHHHHHHHcCCCEEEECCC---CC---------CHHHHHHHHHHHHHHHHHc-CCEEEEee--------CCCcC-cccc
Confidence 56788899999999999653 11 11222333333332 222 34333333 55442 2333
Q ss_pred ccccHHHHHHHHHHHHHHHH-cCCCeecCC----C-CCC-------chHHHHHHHH
Q 020319 238 VIMNDETVHQLCKQAVSQAR-AGADVVSPS----D-MMD-------GRVGAIRAAL 280 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~-AGADiVAPS----D-MMD-------GRV~aIR~aL 280 (327)
.+.++.+... .++|..+.+ .|+|.+|.| = +-. -++..|++.+
T Consensus 145 ~~g~~~~~t~-~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~ 199 (282)
T TIGR01859 145 VDEKEAELAD-PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT 199 (282)
T ss_pred ccccccccCC-HHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh
Confidence 3332222221 234555554 799999987 1 222 3666677665
No 274
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=36.70 E-value=2.6e+02 Score=26.68 Aligned_cols=82 Identities=21% Similarity=0.142 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCC-CCC------------cccccCcCCCCc---HHHHHHHHHHHCC-CeeEEeeec
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDA-LKS------------PTGDEAYNDNGL---VPRTIWLLKDRYP-DLVIYTDVA 220 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~-~KD------------~~Gs~A~n~~gl---V~rAIr~iK~~fP-dl~VitDVc 220 (327)
.+.+.++.+.+.|+..|.+|-.+..- .-| .++...+.-... .-+.|+.+++.++ ++-||.
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig--- 257 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISG--- 257 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEE---
Confidence 36777888999999999987533210 001 112233332222 3577888888773 555544
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 221 Lc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
+|-|.+=+ .|+.+-.||||.|-
T Consensus 258 ---------------~GGI~~~~-------da~~~l~aGA~~V~ 279 (299)
T cd02940 258 ---------------IGGIESWE-------DAAEFLLLGASVVQ 279 (299)
T ss_pred ---------------ECCCCCHH-------HHHHHHHcCCChhe
Confidence 35555433 45556679999875
No 275
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.11 E-value=3.8e+02 Score=25.37 Aligned_cols=102 Identities=9% Similarity=-0.005 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
.+.+.++.+++.||+.|.+.|..- +-..=...=-.+.++...+.... ||+-| |
T Consensus 21 ~~~~li~~l~~~Gv~Gl~~~GstG--------E~~~Lt~eEr~~l~~~~~~~~~~--vi~gv-----------------g 73 (279)
T cd00953 21 KFKKHCENLISKGIDYVFVAGTTG--------LGPSLSFQEKLELLKAYSDITDK--VIFQV-----------------G 73 (279)
T ss_pred HHHHHHHHHHHcCCcEEEEcccCC--------CcccCCHHHHHHHHHHHHHHcCC--EEEEe-----------------C
Confidence 588888999999999999999632 22211111122333333333222 23211 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee---cCCCCC----CchHHHHHHHHHHCCCCCceeeehhh
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVV---SPSDMM----DGRVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiV---APSDMM----DGRV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
. .+.+...+.|-..+++|||.| .|.-.. +|-+...++..+ +++||=|=.
T Consensus 74 ~----~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~-----~lpv~iYn~ 129 (279)
T cd00953 74 S----LNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS-----PYPTFIYNY 129 (279)
T ss_pred c----CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh-----cCCEEEEeC
Confidence 1 122333446666788999954 354222 467777777776 679998853
No 276
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=35.88 E-value=92 Score=31.10 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHcCCCeE---EEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec
Q 020319 158 GLVQEVAKARDVGVNSV---VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sV---lLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~ 234 (327)
++.+.++.+.+.|++.| ++||. |....+ -+.+.++.+.+--|+-+-+.-..+-|-|.-.+- +
T Consensus 152 ~~~~ai~~l~~~G~~~v~~dlI~Gl-Pgqt~e-----------~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~--~- 216 (400)
T PRK07379 152 DIFAAVDLIHQAGIENFSLDLISGL-PHQTLE-----------DWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQ--Y- 216 (400)
T ss_pred HHHHHHHHHHHcCCCeEEEEeecCC-CCCCHH-----------HHHHHHHHHHcCCCCEEEEecceecCCchhHHH--h-
Confidence 36677778889998854 67884 642111 255677777777677555554444444433221 1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCC-CCCCchHHHHHHHHHHCCCCCceeeehh
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPS-DMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS-DMMDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
..|.. - -|+ |..--+...+++.|.++||.+..|-.||
T Consensus 217 ~~g~~----------------------~-~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa 254 (400)
T PRK07379 217 QPGKA----------------------P-LPSDETTAAMYRLAQEILTQAGYEHYEISNYA 254 (400)
T ss_pred hcCCC----------------------C-CCCHHHHHHHHHHHHHHHHHcCCceeeeeheE
Confidence 11211 1 111 1112234567888999999999998887
No 277
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=35.83 E-value=93 Score=29.50 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=67.2
Q ss_pred cccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCC-----cHHHHHHHHHHHCCCeeEE
Q 020319 142 TPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG-----LVPRTIWLLKDRYPDLVIY 216 (327)
Q Consensus 142 ~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~g-----lV~rAIr~iK~~fPdl~Vi 216 (327)
++| .|||+|=... .+-+.+.|+..+.+=+-... ....+.+.+ -+...++.|.+..|.+.|+
T Consensus 12 ~~i-~~~~ayD~~s-------A~i~e~aG~dai~v~~s~~a------~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pvi 77 (240)
T cd06556 12 ERF-ATLTAYDYSM-------AKQFADAGLNVMLVGDSQGM------TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIV 77 (240)
T ss_pred CeE-EEecCCCHHH-------HHHHHHcCCCEEEEChHHHH------HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEE
Confidence 444 3788854332 22333459998887331000 011122212 2456778888888888999
Q ss_pred eeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--CCchHHHHHHHHHHCCCCCceeeehh
Q 020319 217 TDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--MDGRVGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 217 tDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM--MDGRV~aIR~aLD~~Gf~~v~IMSYS 294 (327)
+|.= .|.-.+ .+...+.+-.+.+|||+.|--.|- |-.+|.+||+ +| +.||+..
T Consensus 78 aD~~---------------~G~g~~---~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~----a~---i~ViaRt 132 (240)
T cd06556 78 ADLP---------------FGAYGA---PTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTA----AA---VPVIAHT 132 (240)
T ss_pred EeCC---------------CCCCcC---HHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHH----cC---CeEEEEe
Confidence 9863 233222 233455667777899999988885 2234444443 34 5888886
Q ss_pred hhhh
Q 020319 295 AKYA 298 (327)
Q Consensus 295 AKyA 298 (327)
-=+.
T Consensus 133 d~~p 136 (240)
T cd06556 133 GLTP 136 (240)
T ss_pred CCch
Confidence 5443
No 278
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=35.80 E-value=73 Score=29.65 Aligned_cols=89 Identities=25% Similarity=0.385 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~ 238 (327)
|.-.++++.++||+++++=-. .|..| -++..+++.. =++++.| | |-|.-. .|.
T Consensus 16 le~a~erA~elgik~~vVAS~--------tG~tA-------~k~lemveg~-lkvVvVt------h----h~Gf~e-~g~ 68 (186)
T COG1751 16 LEIAVERAKELGIKHIVVASS--------TGYTA-------LKALEMVEGD-LKVVVVT------H----HAGFEE-KGT 68 (186)
T ss_pred HHHHHHHHHhcCcceEEEEec--------ccHHH-------HHHHHhcccC-ceEEEEE------e----eccccc-CCc
Confidence 455667899999999887432 23222 1233333322 2355555 3 888874 566
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHH
Q 020319 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280 (327)
Q Consensus 239 IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aL 280 (327)
..-|+-++-. +-+-||+|+.-|-|..|-=..|++.|
T Consensus 69 ~e~~~E~~~~------L~erGa~v~~~sHalSg~eRsis~kf 104 (186)
T COG1751 69 QEMDEEVRKE------LKERGAKVLTQSHALSGVERSISRKF 104 (186)
T ss_pred eecCHHHHHH------HHHcCceeeeehhhhhcchhhhhhhc
Confidence 6666655543 34789999999999998655555544
No 279
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=35.75 E-value=2e+02 Score=28.05 Aligned_cols=125 Identities=22% Similarity=0.284 Sum_probs=76.1
Q ss_pred CCCChhhHhhhccCCCCCCCceeeEEEeeCCC---------CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeec
Q 020319 109 NRKSPAMRASFQETNLSPANFVYPLFIHEGEE---------DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 109 lR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~---------~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgv 179 (327)
-++++.+|+++++ ++||+| ||-. .++.+ ...-+.| +.+.+-+.....=..|-|+|-
T Consensus 52 a~~d~e~~~~i~~-----A~li~p----DG~gvV~~ar~~~g~~~~----~rv~G~D--l~~~Ll~~a~~~~~~vfllGg 116 (253)
T COG1922 52 ARKDPEFREILNQ-----ADLILP----DGIGVVRAARRLLGQPLP----ERVAGTD--LVEALLKRAAEEGKRVFLLGG 116 (253)
T ss_pred hccCHHHHHHHhh-----cCEEcc----CchhHHHHHHHHhCccCc----ccCChHH--HHHHHHHHhCccCceEEEecC
Confidence 4688889988776 466665 3431 12222 1122443 666666655555567888884
Q ss_pred CCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC
Q 020319 180 VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG 259 (327)
Q Consensus 180 i~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AG 259 (327)
. .|.+.+|...++++||.+.|.. + | ||+.+-++- +. ..-.-++.|
T Consensus 117 -k--------------p~V~~~a~~~l~~~~p~l~ivg------~----h------~GYf~~~e~-~~---i~~~I~~s~ 161 (253)
T COG1922 117 -K--------------PGVAEQAAAKLRAKYPGLKIVG------S----H------DGYFDPEEE-EA---IVERIAASG 161 (253)
T ss_pred -C--------------HHHHHHHHHHHHHHCCCceEEE------e----c------CCCCChhhH-HH---HHHHHHhcC
Confidence 1 1789999999999999877654 1 3 355554444 43 333457889
Q ss_pred CCeecCCCCCCchHHHHHHHHHHC
Q 020319 260 ADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 260 ADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
+|||-=-==+-.+-.-|++-.+..
T Consensus 162 pdil~VgmG~P~QE~wi~~~~~~~ 185 (253)
T COG1922 162 PDILLVGMGVPRQEIWIARNRQQL 185 (253)
T ss_pred CCEEEEeCCCchhHHHHHHhHHhc
Confidence 999854433445555666555443
No 280
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=35.75 E-value=1.4e+02 Score=28.18 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCc--------ccccCcCCCCc---HHHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSP--------TGDEAYNDNGL---VPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~--------~Gs~A~n~~gl---V~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
+..+.++.+.+.|+..|.+.+.+..-..|. .....+..... ..+.++.||+..+ +-||+
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-ipvi~--------- 239 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD-IPIIG--------- 239 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC-CCEEE---------
Confidence 467777888999999999875332100110 11112221111 2356666776542 33332
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc-----hHHHHHHHHHHCCCCCc
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG-----RVGAIRAALDAEGFQHV 288 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS--DMMDG-----RV~aIR~aLD~~Gf~~v 288 (327)
.|.|.+-+..+ ..-++|||.|.=. -+-|| -...+++.|++.||.++
T Consensus 240 ---------~GGI~s~~da~-------~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~~~ 292 (300)
T TIGR01037 240 ---------VGGITSFEDAL-------EFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFTSI 292 (300)
T ss_pred ---------ECCCCCHHHHH-------HHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCCCCH
Confidence 46676665544 3335899976422 23344 34566777779999765
No 281
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.71 E-value=1e+02 Score=28.59 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-CCCC-CC----Cc-----------ccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec
Q 020319 158 GLVQEVAKARDVGVNSVVLFPK-VPDA-LK----SP-----------TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgv-i~~~-~K----D~-----------~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc 220 (327)
++.+.++.+.++|++.++++-- .|.+ .+ .. +|. .+. --+.+.|+.+|+..++..
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~-~~~--~~~~~~i~~lr~~~~~~~------ 187 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGV-PLP--VSVERNIKRVRNLVGNKY------ 187 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCC-Cch--HHHHHHHHHHHHhcCCCC------
Confidence 3556666788889988887642 1110 00 00 111 111 124556777777666532
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee-cCCCCC
Q 020319 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV-SPSDMM 269 (327)
Q Consensus 221 Lc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiV-APSDMM 269 (327)
|+- +|-|.|-++++.+ +++|||.+ .=|..|
T Consensus 188 -----------i~v-~gGI~~~e~i~~~-------~~~gaD~vvvGSai~ 218 (244)
T PRK13125 188 -----------LVV-GFGLDSPEDARDA-------LSAGADGVVVGTAFI 218 (244)
T ss_pred -----------EEE-eCCcCCHHHHHHH-------HHcCCCEEEECHHHH
Confidence 332 4667777777643 46899844 345554
No 282
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=35.70 E-value=58 Score=31.74 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHH
Q 020319 198 LVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR 277 (327)
Q Consensus 198 lV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR 277 (327)
-+.++|+.+|+..|+.-|..+| + |++ ||...+++|||+|==-.|=--.+..+-
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv--------------------~---tle----ea~ea~~~GaDiI~lDn~~~e~l~~~v 226 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEA--------------------D---TIE----QALTVLQASPDILQLDKFTPQQLHHLH 226 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC--------------------C---CHH----HHHHHHHcCcCEEEECCCCHHHHHHHH
Confidence 4888999999999887666665 1 444 777788999999944433333444444
Q ss_pred HHH
Q 020319 278 AAL 280 (327)
Q Consensus 278 ~aL 280 (327)
+.|
T Consensus 227 ~~l 229 (277)
T TIGR01334 227 ERL 229 (277)
T ss_pred HHH
Confidence 444
No 283
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=35.39 E-value=2.4e+02 Score=28.16 Aligned_cols=71 Identities=24% Similarity=0.312 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHCC-C--eeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc---CCCeecCCCCCC
Q 020319 197 GLVPRTIWLLKDRYP-D--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA---GADVVSPSDMMD 270 (327)
Q Consensus 197 glV~rAIr~iK~~fP-d--l~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~A---GADiVAPSDMMD 270 (327)
|-+..|++.+|+.+| + +.|-+|+ .+ . ..++|+..+++ |+|+|=--.|-.
T Consensus 184 g~~~~A~~~~~~~~p~~~~i~vevdt-------------------~~--~----~~~~Al~~~~~~~~~~d~I~LDn~~~ 238 (343)
T PRK08662 184 GDQVEAWKAFDEVVPPDVPRIALVDT-------------------FK--D----EREEALRAAEALGDRLDGVRLDTPSS 238 (343)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEe-------------------CC--c----cHHHHHHHHHHhCCcCCEEEcCCCCC
Confidence 346778999999998 3 2232221 10 1 22356666667 899986544432
Q ss_pred --chHH----HHHHHHHHCCCCCceeee
Q 020319 271 --GRVG----AIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 271 --GRV~----aIR~aLD~~Gf~~v~IMS 292 (327)
|.+. .+|++||+.|+.++-|.+
T Consensus 239 ~~g~l~~~v~~vr~~ld~~g~~~v~Iea 266 (343)
T PRK08662 239 RRGNFRKIVREVRWTLDIRGYEHVKIFV 266 (343)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 5433 489999999987775553
No 284
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=35.33 E-value=20 Score=30.61 Aligned_cols=45 Identities=18% Similarity=0.495 Sum_probs=37.2
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeeehhhhhhccccchhH
Q 020319 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFR 306 (327)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYSAKyASsfYGPFR 306 (327)
+|=|..+..|+++.|-+.|.++|| ...-.+.-+...|..||..++
T Consensus 7 iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~ 53 (134)
T PRK00668 7 IIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHK 53 (134)
T ss_pred EECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhc
Confidence 466777888999999999999999 566667778888999997654
No 285
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=34.88 E-value=4.7e+02 Score=26.06 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCC--Ccccc-cCcCCCCcHHHHHHHH----HHHCCCeeEEe---eecccCCC--
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALK--SPTGD-EAYNDNGLVPRTIWLL----KDRYPDLVIYT---DVALDPYS-- 225 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~K--D~~Gs-~A~n~~glV~rAIr~i----K~~fPdl~Vit---DVcLc~YT-- 225 (327)
-+.+.+.+++++|...|.|=-+ + ... .+.|+ .....++ +.+.|+.| |+++|+++||. +--|. +.
T Consensus 148 il~~rl~~l~~kGfDGvfLD~l-D-sy~~~~~~~~~~~~~~~~-m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~-~~~g 223 (315)
T TIGR01370 148 IAFSYLDRVIAQGFDGVYLDLI-D-AFEYWAENGDNRPGAAAE-MIAFVCEIAAYARAQNPQFVIIPQNGEELLR-DDHG 223 (315)
T ss_pred HHHHHHHHHHHcCCCeEeeccc-h-hhhhhcccCCcchhhHHH-HHHHHHHHHHHHHHHCCCEEEEecCchhhhh-cccc
Confidence 3677788999999999776332 2 111 01111 0111122 23356666 99999998872 22221 21
Q ss_pred -CCC-cceeecC------CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHCCC
Q 020319 226 -SDG-HDGIVRE------DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAEGF 285 (327)
Q Consensus 226 -shG-HcGIl~~------~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~~Gf 285 (327)
-++ =+||.-| .+.+...++ +.+.++....-++|-.|++-.=.=+ .++..+.+...++||
T Consensus 224 ~~~~~idgV~~Eslf~~~~~~~~e~dr-~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf 298 (315)
T TIGR01370 224 GLAATVSGWAVEELFYYAANRPTEAER-QRRLLALYRLWQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAGL 298 (315)
T ss_pred chhhhceEEEecceEEcCCCCCCHHHH-HHHHHHHHHHHHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcCC
Confidence 111 2444433 234443344 4444555555566998887654444 367888888899999
No 286
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.82 E-value=1.8e+02 Score=28.83 Aligned_cols=106 Identities=26% Similarity=0.282 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
.+.++.+.+.|+..|-+|-...+ + -.+.+.|+.+|+.-.++.+ ++ -.+|
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e---------~----d~~~~~i~~ak~~G~~v~~----~l--~~s~------------ 138 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTE---------A----DVSEQHIGMARELGMDTVG----FL--MMSH------------ 138 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccch---------H----HHHHHHHHHHHHcCCeEEE----EE--Eccc------------
Confidence 46789999999999888743111 1 1477899999987543221 11 1222
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH---CCC--CCceeeehhhhhh
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA---EGF--QHVSIMSYTAKYA 298 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~---~Gf--~~v~IMSYSAKyA 298 (327)
-.|.+.|++++-...++|||+|.=.|+.= -+|.++|+.|+. -|| ++..=|+++.-.+
T Consensus 139 --~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANsla 208 (333)
T TIGR03217 139 --MTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIA 208 (333)
T ss_pred --CCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHH
Confidence 12456788888888899999999888753 468888888862 244 4444466554443
No 287
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=34.67 E-value=2.5e+02 Score=29.95 Aligned_cols=127 Identities=16% Similarity=0.126 Sum_probs=80.8
Q ss_pred hHHHHHH-HHHHcCCCeEEE--eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCCcceee
Q 020319 158 GLVQEVA-KARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIV 233 (327)
Q Consensus 158 ~l~~ev~-~~~~lGI~sVlL--Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshGHcGIl 233 (327)
++++++. .-++.|-.-+.- |+.-+...+. .|-+ ..-..+..+|+++.++.. .+..|..++ -||...|
T Consensus 43 e~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~-~g~~-~~~~~l~~~av~lAr~a~~~~~~Vagsi--GP~g~~~----- 113 (612)
T PRK08645 43 ELILRIHREYIEAGADVIQTNTFGANRIKLKR-YGLE-DKVKEINRAAVRLAREAAGDDVYVAGTI--GPIGGRG----- 113 (612)
T ss_pred HHHHHHHHHHHHhCCCEEecCcccccHHHHHh-cCch-HHHHHHHHHHHHHHHHHhcCCCeEEEeC--CCCCCCC-----
Confidence 4666666 578899773332 5542222221 2221 223467788888888876 346777764 4676642
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeeehhh
Q 020319 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 234 ~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
..|.++.++-.+...+|+-.++++|+|+++=--|.+ --+.++.+++.+.+- -=.++|.+.
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~-~p~~~Sf~~ 174 (612)
T PRK08645 114 -PLGDISLEEIRREFREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKTD-LPIIAQVAF 174 (612)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCC-CcEEEEEEE
Confidence 234466788888899999999999999999998888 345567777766541 122455554
No 288
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=34.47 E-value=2.3e+02 Score=27.50 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCC-----cccccCcCCCC---cHHHHHHHHHHHCC-CeeEEeeecccCCCCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKS-----PTGDEAYNDNG---LVPRTIWLLKDRYP-DLVIYTDVALDPYSSDG 228 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD-----~~Gs~A~n~~g---lV~rAIr~iK~~fP-dl~VitDVcLc~YTshG 228 (327)
++.+.++.+.+.|+..|.++..+.....+ ..+...+.-.. ...+.|+.+|+..+ ++-|+.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~----------- 285 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIG----------- 285 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEE-----------
Confidence 57778888899999999999854321100 01111222111 23577888888765 444443
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 020319 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 229 HcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAP 265 (327)
.|-|.+-+ +|..+-.+|||.|.=
T Consensus 286 -------~GGI~t~~-------da~e~l~aGAd~V~v 308 (327)
T cd04738 286 -------VGGISSGE-------DAYEKIRAGASLVQL 308 (327)
T ss_pred -------ECCCCCHH-------HHHHHHHcCCCHHhc
Confidence 24454433 444555689998753
No 289
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=34.18 E-value=3.9e+02 Score=24.94 Aligned_cols=114 Identities=19% Similarity=0.241 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCCeEEEe-ecCCCCCCCcccccC-cCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCCcceeec
Q 020319 158 GLVQEVAKARDVGVNSVVLF-PKVPDALKSPTGDEA-YNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIVR 234 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLF-gvi~~~~KD~~Gs~A-~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshGHcGIl~ 234 (327)
.|.+.+..+.++||+.|++. |- ++ +....-++ -..+.--...|+.+|+.+ +++.|.. --|- -||-..-
T Consensus 74 ~l~~~L~~~~~~Gi~~iL~l~GD-~~--~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igv----a~yP-e~hp~~~- 144 (274)
T cd00537 74 ELQSILLGAHALGIRNILALRGD-PP--KGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGV----AAYP-EGHPEAP- 144 (274)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCC-CC--CCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCcccc----ccCC-CcCCCCC-
Confidence 58888889999999999998 42 22 21110011 122333556777777765 2221111 1122 4443322
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCcee
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSI 290 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~I 290 (327)
+-++-++.|.+ -.+||||.+=--=.-| ..+....+.+.++|. +++|
T Consensus 145 -----~~~~~~~~L~~----Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi-~vPI 191 (274)
T cd00537 145 -----SLEEDIKRLKR----KVDAGADFIITQLFFDNDAFLRFVDRCRAAGI-TVPI 191 (274)
T ss_pred -----CHHHHHHHHHH----HHHCCCCEEeecccccHHHHHHHHHHHHHcCC-CCCE
Confidence 12334444433 4567999988777778 677788888888886 3443
No 290
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=34.08 E-value=26 Score=33.64 Aligned_cols=69 Identities=28% Similarity=0.316 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcc---e-------eecCCCccccHHHHHHHH--------HHHHHHHH
Q 020319 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHD---G-------IVREDGVIMNDETVHQLC--------KQAVSQAR 257 (327)
Q Consensus 197 glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHc---G-------Il~~~G~IdND~Tv~~La--------k~Als~A~ 257 (327)
..+.+||+.||+++++ +-|+. .|..|||.-++- | ++. ..+.|-+-++.+. +.+..+.+
T Consensus 115 ~~~leai~~l~~~~~~~~pi~g-~~~gP~Tla~~l~~g~~~~~~~~~~~--~~~~~Pe~v~~ll~~~t~~~~~~~~~~~e 191 (338)
T TIGR01464 115 PYVYEAIKLLREELPGEVPLIG-FAGAPWTLASYMIEGGGSKDFAKAKR--FMYQEPEVLHALLNKLTDATIEYLVEQVK 191 (338)
T ss_pred HHHHHHHHHHHHHcCCCCceEE-eCCchHHHHHHHHcCCCCccHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999975 54443 478899877642 1 111 1233444444433 34445667
Q ss_pred cCCCeecCCCC
Q 020319 258 AGADVVSPSDM 268 (327)
Q Consensus 258 AGADiVAPSDM 268 (327)
+|||++.-.|.
T Consensus 192 aGad~i~i~d~ 202 (338)
T TIGR01464 192 AGAQAVQIFDS 202 (338)
T ss_pred cCCCEEEEECC
Confidence 89998875543
No 291
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=33.96 E-value=2.9e+02 Score=28.08 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHH
Q 020319 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280 (327)
Q Consensus 241 ND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aL 280 (327)
.++..++|.+.|..+.+|||+.|=.-.+-+--...|-+.|
T Consensus 177 ~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~la~~It~~l 216 (332)
T PLN02424 177 TAESAVKVVETALALQEAGCFAVVLECVPAPVAAAITSAL 216 (332)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHHHhC
Confidence 5567889999999999999999877776666556666555
No 292
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=33.93 E-value=65 Score=30.84 Aligned_cols=107 Identities=14% Similarity=0.204 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcc----eeecCCCccccHHHHH--------HHHHHHHHHHHcCCCee
Q 020319 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHD----GIVREDGVIMNDETVH--------QLCKQAVSQARAGADVV 263 (327)
Q Consensus 197 glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHc----GIl~~~G~IdND~Tv~--------~Lak~Als~A~AGADiV 263 (327)
..+-.||+.+|+++++ ..|+.- +..|||.-+|= .++. ..+.|.+.++ .+.+.+..+.++|||+|
T Consensus 121 ~~~l~ai~~l~~~~~~~~pv~g~-v~GP~Tla~~l~g~~~~~~--~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I 197 (340)
T TIGR01463 121 PVVLEAIKILRERYGDTHPIIGP-MGGPFTLAQLMIGVSEFLS--WISTDPDYAKAVLELALDFVIAYAKAMVEAGADVI 197 (340)
T ss_pred hhHHHHHHHHHHHcCCceeeeCC-CCcHHHHHHHHHCHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 3567899999999975 555554 57888866531 1111 2344555553 44556667889999987
Q ss_pred cCCC------CCCch------HHHHHHHHHHCC-CCCceeeehhhhhhccccchhHH
Q 020319 264 SPSD------MMDGR------VGAIRAALDAEG-FQHVSIMSYTAKYASSFYGPFRE 307 (327)
Q Consensus 264 APSD------MMDGR------V~aIR~aLD~~G-f~~v~IMSYSAKyASsfYGPFRd 307 (327)
.=.| ++.-. +-.+++.++.-. +....|+ |.....+.++.-|++
T Consensus 198 ~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~il-H~CG~~~~~~~~l~~ 253 (340)
T TIGR01463 198 AIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVL-HICGFTQPILRDIAN 253 (340)
T ss_pred EecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEE-EECCCchhhHHHHHH
Confidence 4444 44332 456677777621 2233343 444444444443443
No 293
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.79 E-value=2.6e+02 Score=27.02 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=42.5
Q ss_pred eeEEEeeCCCCcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCc---CCCCcHHHHHHHHH
Q 020319 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAY---NDNGLVPRTIWLLK 207 (327)
Q Consensus 131 ~PlFV~eg~~~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~---n~~glV~rAIr~iK 207 (327)
.||+|.-|.. .+++ ++...++.+.+.|.+.|+|-= +|...| ..|-+=-++|..+|
T Consensus 123 kPVilk~G~~------------~t~~-e~~~A~e~i~~~Gn~~i~L~e---------Rg~~~Y~~~~~n~~dl~ai~~lk 180 (250)
T PRK13397 123 KPILFKRGLM------------ATIE-EYLGALSYLQDTGKSNIILCE---------RGVRGYDVETRNMLDIMAVPIIQ 180 (250)
T ss_pred CeEEEeCCCC------------CCHH-HHHHHHHHHHHcCCCeEEEEc---------cccCCCCCccccccCHHHHHHHH
Confidence 4888876531 1233 577788888899998887741 122223 22344459999999
Q ss_pred HHCCCeeEEee
Q 020319 208 DRYPDLVIYTD 218 (327)
Q Consensus 208 ~~fPdl~VitD 218 (327)
+.| .+-|+.|
T Consensus 181 ~~~-~lPVivd 190 (250)
T PRK13397 181 QKT-DLPIIVD 190 (250)
T ss_pred HHh-CCCeEEC
Confidence 987 6777776
No 294
>PRK10200 putative racemase; Provisional
Probab=33.73 E-value=91 Score=28.93 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCeec-CCCC---------------CCchHHHHHHHHHHCCCCCceeeehhhhhhccccchh
Q 020319 242 DETVHQLCKQAVSQARAGADVVS-PSDM---------------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (327)
Q Consensus 242 D~Tv~~Lak~Als~A~AGADiVA-PSDM---------------MDGRV~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPF 305 (327)
+.-.+.|++.+-.+.++|||+|+ |+-- +=|.+.++.+++.+.|..+|+||+=.+-..|.||.-.
T Consensus 58 ~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~~~VglLaT~~Ti~s~~Y~~~ 137 (230)
T PRK10200 58 DKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGMTRVALLGTRYTMEQDFYRGR 137 (230)
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCCCeEEEeccHHHHHHhHHHHH
Confidence 45778999999999999999875 2211 1145667777777889999999999999999999755
No 295
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=33.59 E-value=3.4e+02 Score=27.17 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCC-CC------------cccccCcCCCCcH---HHHHHHHHHHCC--CeeEEeeec
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDAL-KS------------PTGDEAYNDNGLV---PRTIWLLKDRYP--DLVIYTDVA 220 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~-KD------------~~Gs~A~n~~glV---~rAIr~iK~~fP--dl~VitDVc 220 (327)
+.+.++.+.+.|+..|.+|-.+..-. -| .++...+.-..+- -+.|+.+++..+ ++-||.
T Consensus 182 ~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig--- 258 (420)
T PRK08318 182 IREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISG--- 258 (420)
T ss_pred HHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEe---
Confidence 55666778899999999876543200 00 1233344433332 466666766652 555554
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec--CCCCCCc------hHHHHHHHHHHCCCCCce
Q 020319 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS--PSDMMDG------RVGAIRAALDAEGFQHVS 289 (327)
Q Consensus 221 Lc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA--PSDMMDG------RV~aIR~aLD~~Gf~~v~ 289 (327)
.|-|.+= +.|+.+-+||||.|- =.-|.+| -+..+++.|++.||..+.
T Consensus 259 ---------------~GGI~s~-------~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~si~ 313 (420)
T PRK08318 259 ---------------IGGIETW-------RDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFASLE 313 (420)
T ss_pred ---------------ecCcCCH-------HHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcchHH
Confidence 2445443 345566679999874 2223323 244456667888885443
No 296
>PRK05337 beta-hexosaminidase; Provisional
Probab=33.48 E-value=2.7e+02 Score=27.61 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCCeEEE----eecCCCCCCCcccccCcCCCCcHHHHHH-HHHHHCC-CeeEEee
Q 020319 160 VQEVAKARDVGVNSVVL----FPKVPDALKSPTGDEAYNDNGLVPRTIW-LLKDRYP-DLVIYTD 218 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlL----Fgvi~~~~KD~~Gs~A~n~~glV~rAIr-~iK~~fP-dl~VitD 218 (327)
+.-.+.+++.|+.+||. |+.|+. .|-+.=...|. .||++.. +=+|+||
T Consensus 196 l~PF~~ai~~g~~~vM~aHv~y~~id~-----------~Pa~~S~~~l~~lLR~elGF~G~ViSD 249 (337)
T PRK05337 196 MAPFRALIAAGLDAVMPAHVIYPQVDP-----------RPAGFSRYWLQDILRQELGFDGVIFSD 249 (337)
T ss_pred HHHHHHHHhcCCCEEEeCceeccCCCC-----------CCCcCCHHHHHHHHHHhcCCCEEEEec
Confidence 34456688999999997 554321 13344445564 6787753 6678887
No 297
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.25 E-value=3e+02 Score=24.25 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+..++-+..+..=.+|.|+|--+ +.+.++.+.|++.||++.|..
T Consensus 34 l~~~ll~~~~~~~~~v~llG~~~---------------~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 34 LMPALLELAAQKGLRVFLLGAKP---------------EVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred HHHHHHHHHHHcCCeEEEECCCH---------------HHHHHHHHHHHHHCCCcEEEE
Confidence 66555554443336777778411 568889999999999998875
No 298
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=33.21 E-value=49 Score=25.69 Aligned_cols=50 Identities=18% Similarity=0.364 Sum_probs=37.7
Q ss_pred ceeeEEEeeCC-C--CcccCCCCCceEe--cchhhHHHHHHHHHHcCCCeEEEeec
Q 020319 129 FVYPLFIHEGE-E--DTPIGAMPGCYRL--GWRHGLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 129 LI~PlFV~eg~-~--~~~I~SMPGv~r~--sid~~l~~ev~~~~~lGI~sVlLFgv 179 (327)
..||++|+-.+ + ...++.+|||+-. ++. ++++.+++++++.|.+.+-.+.
T Consensus 2 ~~y~~~i~~~~dg~y~~~~Pdlpgc~s~G~T~e-ea~~n~~eai~l~~e~~~~~~~ 56 (73)
T COG1598 2 MRYPALIEKDEDGGYVASVPDLPGCHSQGETLE-EALQNAKEAIELHLEALLEEGE 56 (73)
T ss_pred ceeEEEEEEcCCCCEEEEeCCCCCccccCCCHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 46899998543 2 4799999999987 453 5888888999988887554443
No 299
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=33.17 E-value=2e+02 Score=26.80 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
.+.++.+.+.|+..|-+|-.+.+ . -.+.++++.+|+.--+ |..-+. +. +..
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~----~---------~~~~~~i~~ak~~G~~--v~~~~~-~~-------------~~~ 138 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTE----A---------DVSEQHIGAARKLGMD--VVGFLM-MS-------------HMA 138 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhh----H---------HHHHHHHHHHHHCCCe--EEEEEE-ec-------------cCC
Confidence 46688899999999888753221 1 1467788888876332 222111 11 111
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH--CCC--CCceeeehhhhh
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA--EGF--QHVSIMSYTAKY 297 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD~--~Gf--~~v~IMSYSAKy 297 (327)
|.+.+.+.+-...++|||.|.=.|+.= -.|..||+.++. -|| ++..=|+++.=.
T Consensus 139 ----~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~l 204 (263)
T cd07943 139 ----SPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSL 204 (263)
T ss_pred ----CHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHH
Confidence 224455555556789999999998764 235667766543 233 344445555433
No 300
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=33.16 E-value=2.7e+02 Score=25.10 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCC-cHHHHHHHHHHHCCCeeEEee
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG-LVPRTIWLLKDRYPDLVIYTD 218 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~g-lV~rAIr~iK~~fPdl~VitD 218 (327)
.++++.+++.|...|++-. +. .. +|++ .+..-++.+|+.+ ++.++.+
T Consensus 82 ~~~~~~a~~aGad~I~~~~--~~-~~--------~p~~~~~~~~i~~~~~~g-~~~iiv~ 129 (219)
T cd04729 82 IEEVDALAAAGADIIALDA--TD-RP--------RPDGETLAELIKRIHEEY-NCLLMAD 129 (219)
T ss_pred HHHHHHHHHcCCCEEEEeC--CC-CC--------CCCCcCHHHHHHHHHHHh-CCeEEEE
Confidence 4688999999999655532 21 11 2332 6677888899888 7777764
No 301
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=33.09 E-value=3.1e+02 Score=24.00 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe-eecccCCCCCCcceeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit-DVcLc~YTshGHcGIl~~~ 236 (327)
...+.++.+++.|+..|++++. ++ +. ....++.++++ .+-|++ |.- +.........+
T Consensus 43 ~q~~~i~~~i~~~~d~Iiv~~~-~~-------------~~-~~~~l~~~~~~--gIpvv~~d~~--~~~~~~~~~~v--- 100 (257)
T PF13407_consen 43 EQIEQIEQAISQGVDGIIVSPV-DP-------------DS-LAPFLEKAKAA--GIPVVTVDSD--EAPDSPRAAYV--- 100 (257)
T ss_dssp HHHHHHHHHHHTTESEEEEESS-ST-------------TT-THHHHHHHHHT--TSEEEEESST--HHTTSTSSEEE---
T ss_pred HHHHHHHHHHHhcCCEEEecCC-CH-------------HH-HHHHHHHHhhc--CceEEEEecc--ccccccceeee---
Confidence 4678888999999999999985 22 12 23566777766 344443 222 01112222223
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-----CchHHHHHHHHHHCCCCCceeee
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-----DGRVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMM-----DGRV~aIR~aLD~~Gf~~v~IMS 292 (327)
..||.+.-..++++.+.....+..++--+.-. --|+..++++|.++ .++-++.
T Consensus 101 -~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~--~~~~~~~ 158 (257)
T PF13407_consen 101 -GTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEY--PGVEIVD 158 (257)
T ss_dssp -EE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHC--TTEEEEE
T ss_pred -eccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhc--ceeeeee
Confidence 24788888889999998888776776332222 24888899999883 3666665
No 302
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=33.02 E-value=44 Score=26.13 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=25.8
Q ss_pred ccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 188 ~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+|+.-|++...+-.++..+++++|+++|++
T Consensus 9 ~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvh 38 (71)
T PF10686_consen 9 TGGRDWTDHELIWAALDKVHARHPDMVLVH 38 (71)
T ss_pred EECCccccHHHHHHHHHHHHHhCCCEEEEE
Confidence 456668888999999999999999998875
No 303
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=32.93 E-value=1.9e+02 Score=24.37 Aligned_cols=91 Identities=24% Similarity=0.279 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHH---HCC-CeeEEeeecccCCCCCCcceee
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKD---RYP-DLVIYTDVALDPYSSDGHDGIV 233 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~---~fP-dl~VitDVcLc~YTshGHcGIl 233 (327)
.+.+.++++.+.|+..|-|- . ||... ....+.++.|++ .+. .+++-.+ ++-+-..|-+|+.
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr-~-----~~~~~-------~~~~~~~~~i~~~~~~~~~~l~~~~~--~~~a~~~g~~~vh 77 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLR-E-----KDLSA-------RELLELARALRELCRKYGVPLIINDR--VDLALAVGADGVH 77 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEe-C-----CCCCH-------HHHHHHHHHHHHHHHHhCCeEEEeCh--HHHHHHcCCCEEe
Confidence 47899999999999887553 1 22211 122234444443 332 2433222 3334456777776
Q ss_pred cCCCccccHHHHHHH-------------HHHHHHHHHcCCCeec
Q 020319 234 REDGVIMNDETVHQL-------------CKQAVSQARAGADVVS 264 (327)
Q Consensus 234 ~~~G~IdND~Tv~~L-------------ak~Als~A~AGADiVA 264 (327)
-+... .....+..+ .+.+....++|+|.|.
T Consensus 78 ~~~~~-~~~~~~~~~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~ 120 (196)
T cd00564 78 LGQDD-LPVAEARALLGPDLIIGVSTHSLEEALRAEELGADYVG 120 (196)
T ss_pred cCccc-CCHHHHHHHcCCCCEEEeeCCCHHHHHHHhhcCCCEEE
Confidence 43221 122333322 2466677788999985
No 304
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.89 E-value=2.1e+02 Score=29.23 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=29.1
Q ss_pred ccCCCCCceEe-cchhhHHHHHHHHHHcCCCeEEEeec
Q 020319 143 PIGAMPGCYRL-GWRHGLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 143 ~I~SMPGv~r~-sid~~l~~ev~~~~~lGI~sVlLFgv 179 (327)
.|+.+-|-+|. +++ .+++|++.+.+.|++.|.|.+.
T Consensus 172 ~ip~~rG~~rsr~~e-~Iv~Ei~~l~~~G~kei~l~~~ 208 (449)
T PRK14332 172 VVPYTRGRERSRDPK-SIVREIQDLQEKGIRQVTLLGQ 208 (449)
T ss_pred CcccccCCcccCCHH-HHHHHHHHHHHCCCeEEEEecc
Confidence 45556666664 775 7999999999999999999874
No 305
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.86 E-value=76 Score=26.28 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCCCceeeeh
Q 020319 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMSY 293 (327)
Q Consensus 243 ~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV---~aIR~aLD~~Gf~~v~IMSY 293 (327)
-+.+.+.+.+. +-+||+|+=|-+|.-.. ..+.+.|.+.|+.++.||.=
T Consensus 37 vp~e~~~~~a~---~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 37 QTPEEIVEAAI---QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 34455555554 66999999999988555 44555777889988887754
No 306
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=32.82 E-value=29 Score=33.57 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcc----------eeecCCCccccHHHHHHHH--------HHHHHHHH
Q 020319 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHD----------GIVREDGVIMNDETVHQLC--------KQAVSQAR 257 (327)
Q Consensus 197 glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHc----------GIl~~~G~IdND~Tv~~La--------k~Als~A~ 257 (327)
-.+-+||+.+|+++++ +.|+. .|..|+|.-++- -++. -.+.|-+-++.|. +.+..+.+
T Consensus 121 ~~~leai~~l~~~~~~~~~vig-~v~gP~Tla~~l~~~~~~~~~~~~~~--~~~~~Pe~v~~ll~~~t~~~~~~~~~~~e 197 (346)
T PRK00115 121 PYVLEAVRLLRRELGGEVPLIG-FAGAPWTLATYMVEGGGSKDYAKTKA--MMYAEPELLHALLDKLADATIAYLNAQIE 197 (346)
T ss_pred HHHHHHHHHHHHHhCCCceEEe-eCCcHHHHHHHHHcCCCCccHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999985 66665 578899887642 1111 1233444444433 34456777
Q ss_pred cCCCeecCCC
Q 020319 258 AGADVVSPSD 267 (327)
Q Consensus 258 AGADiVAPSD 267 (327)
||||+|.-.|
T Consensus 198 aGad~i~i~d 207 (346)
T PRK00115 198 AGAQAVQIFD 207 (346)
T ss_pred cCCCEEEEec
Confidence 9999886443
No 307
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.70 E-value=3.9e+02 Score=26.83 Aligned_cols=111 Identities=18% Similarity=0.141 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEeeecccCCCCCC--------
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDG-------- 228 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitDVcLc~YTshG-------- 228 (327)
++.++++++++.|.+++.+= +.. +| .+ --.+.|+++++.+ |++-++.|.. +.||...
T Consensus 163 ~~~~~a~~~~~~Gf~~~Kik--vg~--~~------~~---~di~~v~avRe~~G~~~~l~vDaN-~~w~~~~A~~~~~~l 228 (385)
T cd03326 163 RLRDEMRRYLDRGYTVVKIK--IGG--AP------LD---EDLRRIEAALDVLGDGARLAVDAN-GRFDLETAIAYAKAL 228 (385)
T ss_pred HHHHHHHHHHHCCCCEEEEe--CCC--CC------HH---HHHHHHHHHHHhcCCCCeEEEECC-CCCCHHHHHHHHHHh
Confidence 47889999999999999882 110 00 00 1156788899988 7899999986 6665431
Q ss_pred -ccee--ecCCCccccHHHHHHHHH----------------HHHHHHHcCC-----CeecCCCCCCchHHHHHHHHHH
Q 020319 229 -HDGI--VREDGVIMNDETVHQLCK----------------QAVSQARAGA-----DVVSPSDMMDGRVGAIRAALDA 282 (327)
Q Consensus 229 -HcGI--l~~~G~IdND~Tv~~Lak----------------~Als~A~AGA-----DiVAPSDMMDGRV~aIR~aLD~ 282 (327)
.-++ +.|-=..+|-+.+..|.+ ......+.|| |+|-|-=|--|=|...++..+-
T Consensus 229 ~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~l 306 (385)
T cd03326 229 APYGLRWYEEPGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDV 306 (385)
T ss_pred hCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHH
Confidence 1122 322111244455555554 3333445554 9999988877766665555544
No 308
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=32.58 E-value=54 Score=34.46 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=50.1
Q ss_pred CcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC-CCeeEEee
Q 020319 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTD 218 (327)
Q Consensus 141 ~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlL-Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f-Pdl~VitD 218 (327)
.+.|+.+|-.|.| ++-+.+..+++.|-+.|.| ||- .-++|. ..-.+.|++.+ .+..|++|
T Consensus 24 ~~~~~~lp~~~~f----Ei~ktv~~Ir~~~~kRVALQfPD--~LL~~S------------~~I~~ile~~~~~k~~VLaD 85 (453)
T KOG2648|consen 24 PEALKLLPSNYNF----EIHKTVWFIRSLGAKRVALQFPD--GLLMYS------------CKISDILESFTGAKTFVLGD 85 (453)
T ss_pred chhhcccchhcch----hhhhHHHHHHhCCceEEEEeCCh--HHhhHH------------HHHHHHHHHhccccEEEEec
Confidence 5788888888854 3667788889999999999 773 334543 23445666666 48999999
Q ss_pred e-----cccCCCC
Q 020319 219 V-----ALDPYSS 226 (327)
Q Consensus 219 V-----cLc~YTs 226 (327)
| |+|+||.
T Consensus 86 ttYGsCCVDevaA 98 (453)
T KOG2648|consen 86 TTYGSCCVDEVAA 98 (453)
T ss_pred CcccccccchHHH
Confidence 8 8888885
No 309
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=32.39 E-value=1.4e+02 Score=30.42 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCc---------------------HHHHHHHHHHHCCCeeEE
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL---------------------VPRTIWLLKDRYPDLVIY 216 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~gl---------------------V~rAIr~iK~~fPdl~Vi 216 (327)
.|.+.+.-+.++|+++|-|=|+... .+...+..|++.-. +.+.|.+++++ .|-||
T Consensus 23 ~I~~kldyl~~LGvtaIwl~P~~~~--~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~--Gi~vi 98 (479)
T PRK09441 23 RLAERAPELAEAGITAVWLPPAYKG--TSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHEN--GIKVY 98 (479)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCccC--CCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHC--CCEEE
Confidence 6899999999999999999886432 22122233333222 55666666666 79999
Q ss_pred eeecccCC
Q 020319 217 TDVALDPY 224 (327)
Q Consensus 217 tDVcLc~Y 224 (327)
.|+.+-+-
T Consensus 99 ~D~V~NH~ 106 (479)
T PRK09441 99 ADVVLNHK 106 (479)
T ss_pred EEECcccc
Confidence 99987653
No 310
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=32.23 E-value=86 Score=28.51 Aligned_cols=68 Identities=26% Similarity=0.280 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHH
Q 020319 198 LVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAI 276 (327)
Q Consensus 198 lV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMM-DGRV~aI 276 (327)
.+.+.|+.||+.+ ..|+.|.=+ -|--.|+...++.....+++|||+|-=...| +..+.+.
T Consensus 43 ~l~~~i~~l~~~~--~~I~~D~K~-----------------~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~G~~tl~~~ 103 (226)
T PF00215_consen 43 ALPEIIEELKERG--KPIFLDLKL-----------------GDIGNTVARYAEAGFAAFELGADAVTVHPFAGDDTLEAA 103 (226)
T ss_dssp HHHHHHHHHHHTT--SEEEEEEEE------------------SSHHHHHHHHHSCHHHHTTTESEEEEEGTTHHHHHHHH
T ss_pred hHHHHHHHHHHhc--CCEeeeeee-----------------cccchHHHHHHHHhhhhhcCCCcEEEEeccCCHHHHHHH
Confidence 7889999999998 899998754 2567888888877667899999998766665 3555666
Q ss_pred HHHHHHCC
Q 020319 277 RAALDAEG 284 (327)
Q Consensus 277 R~aLD~~G 284 (327)
.++..+.|
T Consensus 104 ~~~a~~~~ 111 (226)
T PF00215_consen 104 VKAAKKHG 111 (226)
T ss_dssp HHHHHHTT
T ss_pred HHHHhccC
Confidence 66666665
No 311
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=32.18 E-value=49 Score=31.49 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC-----CCCCC--------------c--hHHHHHHHHHHCCCCCceeeehhhh
Q 020319 243 ETVHQLCKQAVSQARAGADVVSP-----SDMMD--------------G--RVGAIRAALDAEGFQHVSIMSYTAK 296 (327)
Q Consensus 243 ~Tv~~Lak~Als~A~AGADiVAP-----SDMMD--------------G--RV~aIR~aLD~~Gf~~v~IMSYSAK 296 (327)
.|+=--.+||+.-|+|||++||| .|..| | .|..|++.+++.|+ ++-||.=|.|
T Consensus 144 ~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~-~tkiL~AS~r 217 (252)
T cd00439 144 VTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFK-KQRVLWASFS 217 (252)
T ss_pred eeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCC-CCeEEEEeeC
Confidence 34444456999999999999999 23333 2 24467777777776 6777765543
No 312
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=32.00 E-value=1.8e+02 Score=30.26 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCC----cccccCcCCC-CcHHHHHHHHHHHC-CCeeEEeeecccCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKS----PTGDEAYNDN-GLVPRTIWLLKDRY-PDLVIYTDVALDPY 224 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD----~~Gs~A~n~~-glV~rAIr~iK~~f-Pdl~VitDVcLc~Y 224 (327)
++.+.+..+.++||++|-|=|+.+...+| ...-.+.+|. |-...--++|++.. -.|-||.|+.+..-
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 68889999999999999998875432211 1111122333 33344444444443 27999999998753
No 313
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=31.97 E-value=2.8e+02 Score=27.08 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY 210 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f 210 (327)
+.++.++.+.+.|+..|.+.|...+. --.|... -..|+.||++.
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~--~~~G~a~-------~~~i~~ik~~~ 193 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRAC--LFNGEAE-------YDSIRAVKQKV 193 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcccc--ccCCCcC-------hHHHHHHHHhc
Confidence 36777788899999999999863111 1123222 25888899875
No 314
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=31.84 E-value=82 Score=28.77 Aligned_cols=48 Identities=25% Similarity=0.576 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccC
Q 020319 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (327)
Q Consensus 158 ~l~~ev~~~~~lGI--~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~ 223 (327)
.+.+.++.+.+.|+ +.|.+..+|.. +++|+.|.++||++-|+| .|+|+
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~~ias-----------------~~Gl~~l~~~~P~v~I~t-a~iD~ 185 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVSVIAS-----------------PEGLERLLKAFPDVRIYT-AAIDP 185 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEEEEEE-----------------HHHHHHHHHHSTTSEEEE-EEEES
T ss_pred hHHHHHHHHHHcCCCcceEEEEEEEec-----------------HHHHHHHHHhCCCeEEEE-EEEcc
Confidence 48899999999998 68888777542 469999999999999887 45554
No 315
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=31.79 E-value=69 Score=28.99 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcceee
Q 020319 197 GLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIV 233 (327)
Q Consensus 197 glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl 233 (327)
-....++..++++|| +-+|.+-|-+||=|-|=|..++
T Consensus 102 ~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~v 139 (196)
T PF01076_consen 102 RWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVV 139 (196)
T ss_pred HHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEe
Confidence 467788899999999 7889999999999999999998
No 316
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=31.54 E-value=1.6e+02 Score=31.12 Aligned_cols=20 Identities=25% Similarity=0.119 Sum_probs=13.6
Q ss_pred HHHHHHcCCCeecCCCCCCc
Q 020319 252 AVSQARAGADVVSPSDMMDG 271 (327)
Q Consensus 252 Als~A~AGADiVAPSDMMDG 271 (327)
++.-.+||||.|-=|-.-=|
T Consensus 304 slaAi~aGa~~Vd~Tv~GiG 323 (503)
T PLN03228 304 TIAGICAGARQVEVTINGIG 323 (503)
T ss_pred HHHHHHhCCCEEEEeccccc
Confidence 55556999999976544333
No 317
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=31.48 E-value=71 Score=30.38 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCC-CCCCcccccCcCCCCcHHH---HHHHHHHHCCCeeEEeeecccCCCCCCcceeec
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPD-ALKSPTGDEAYNDNGLVPR---TIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~-~~KD~~Gs~A~n~~glV~r---AIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~ 234 (327)
-.+.++.+.+.|++.|-+|--+++ ..+-..+ .+.+-.+.+ +|+..|+.- +. ||++.-++.+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~---~~~~e~~~~~~~~i~~a~~~G--~~----v~~~~eda~r------ 137 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHG---KSITEIIESAVEVIEFVKSKG--IE----VRFSSEDSFR------ 137 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHCC--Ce----EEEEEEeeCC------
Confidence 366789999999999988643332 1121112 112222333 344444432 21 2222221111
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD 281 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aLD 281 (327)
.+.+.|. +.+-...++|||.|.=.||+= -.|..||+.++
T Consensus 138 -----~~~~~l~---~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~ 184 (262)
T cd07948 138 -----SDLVDLL---RVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS 184 (262)
T ss_pred -----CCHHHHH---HHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC
Confidence 1133344 444444678999999988764 45677777653
No 318
>PRK12999 pyruvate carboxylase; Reviewed
Probab=31.40 E-value=1.3e+02 Score=34.67 Aligned_cols=134 Identities=22% Similarity=0.314 Sum_probs=69.6
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCccee
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGI 232 (327)
|.++ -+++.++++.+.|...|-| ||..|- ..|. -+-+.|++||+++ ++ |..-|+||-.
T Consensus 688 ~~~~-~~~~~a~~l~~~Ga~~i~i--------kDt~G~--l~P~-~~~~lv~~lk~~~-~i---------pi~~H~Hnt~ 745 (1146)
T PRK12999 688 YDLD-YYVDLAKELEKAGAHILAI--------KDMAGL--LKPA-AAYELVSALKEEV-DL---------PIHLHTHDTS 745 (1146)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEE--------CCccCC--CCHH-HHHHHHHHHHHHc-CC---------eEEEEeCCCC
Confidence 3443 4666777777777765443 344443 1221 2445677777776 32 2344777632
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCch-----HHHHHHHHHHCCCC-C--c-eeeehhhhhh--c
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDGR-----VGAIRAALDAEGFQ-H--V-SIMSYTAKYA--S 299 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS--DMMDGR-----V~aIR~aLD~~Gf~-~--v-~IMSYSAKyA--S 299 (327)
| .-...++.-++||||+|--+ .| =|+ ...+=.+|...|+. . . .|+..+..+. -
T Consensus 746 ----G---------la~an~laA~~aGad~vD~av~gl-g~~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r 811 (1146)
T PRK12999 746 ----G---------NGLATYLAAAEAGVDIVDVAVASM-SGLTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVR 811 (1146)
T ss_pred ----c---------hHHHHHHHHHHhCCCEEEecchhh-cCCcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHH
Confidence 2 11124677789999998433 22 233 34455566666762 1 1 3344443222 2
Q ss_pred cccchhHHHhhcCCCCCCCcccCCC
Q 020319 300 SFYGPFREALDSNPRFGDKKTKLQR 324 (327)
Q Consensus 300 sfYGPFRdAa~Sap~fGDRktYQmd 324 (327)
.+|.||-.-. -++. .+=-.|||+
T Consensus 812 ~~y~~~~~~~-~~~~-~~v~~~~~P 834 (1146)
T PRK12999 812 PYYAPFESGL-KSPT-TEVYLHEMP 834 (1146)
T ss_pred hHhhccCCCC-CCCC-cCeEEecCC
Confidence 6898884222 1111 235566776
No 319
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=31.32 E-value=1.3e+02 Score=32.48 Aligned_cols=91 Identities=18% Similarity=0.408 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHcCCCeEEEe-ecCCCCCCCcccccCcC-CC-C--cHHHHHHHHHHHCCCeeEEeeecccCCCCCCccee
Q 020319 158 GLVQEVAKARDVGVNSVVLF-PKVPDALKSPTGDEAYN-DN-G--LVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLF-gvi~~~~KD~~Gs~A~n-~~-g--lV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGI 232 (327)
.+-+.++.+.++||+.|+-. |- |+ .|++-|. .+ | .--.-||-||++|.|-.= +|.--|- .|||-.
T Consensus 93 ~Id~aLe~a~~~GirNILALRGD-pP-----~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~---IgVAgYP-Eghpe~ 162 (590)
T KOG0564|consen 93 MIDKALEQAKALGIRNILALRGD-PP-----IGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFC---IGVAGYP-EGHPEA 162 (590)
T ss_pred HHHHHHHHHHHhCchhhhhhcCC-CC-----CCccccccccCCchhHHHHHHHHHHHhCCeEE---EEeccCC-CCCcCC
Confidence 36677889999999998754 42 33 2322222 11 2 233467888999998543 3455575 899985
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
-..| -++.|+.|-+ -.+||||.|---
T Consensus 163 ~~~~----~~~Dl~yLk~----KvdaGaDFIiTQ 188 (590)
T KOG0564|consen 163 PSHD----YLADLPYLKE----KVDAGADFIITQ 188 (590)
T ss_pred cccc----hhhhhHHHHH----hhcccchhhhhh
Confidence 5322 3455666544 357999988554
No 320
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=31.25 E-value=3e+02 Score=27.75 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=52.8
Q ss_pred HcCCCeEEEeecCCCCCCCcccccCcCCCCc----HHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc-ccH
Q 020319 168 DVGVNSVVLFPKVPDALKSPTGDEAYNDNGL----VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI-MND 242 (327)
Q Consensus 168 ~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~gl----V~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I-dND 242 (327)
++|+.-+.+....+. .. +. ..||-. +....+.+|+.--|+.|+.|=--| -+++++++|.+ ..|
T Consensus 186 ~lg~~vv~~~~~~d~-~F---p~--~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD~D------R~~ivd~~G~~l~~d 253 (445)
T PRK09542 186 GLPITLLPLYFELDG-TF---PN--HEANPLDPANLVDLQAFVRETGADIGLAFDGDAD------RCFVVDERGQPVSPS 253 (445)
T ss_pred hCCCEEEEEecCcCC-CC---CC--CCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCc------eEEEECCCCCCccHH
Confidence 678877766553221 11 11 233322 445566667666789999874433 34788888755 568
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 020319 243 ETVHQLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 243 ~Tv~~Lak~Als~A~AGADiVAP 265 (327)
.++..+++.-+.. ..|+.||.|
T Consensus 254 ~~~~l~~~~~l~~-~~~~~vv~~ 275 (445)
T PRK09542 254 AVTALVAARELAR-EPGATIIHN 275 (445)
T ss_pred HHHHHHHHHHHHH-CCCCeEEEe
Confidence 8888888777764 456777766
No 321
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=31.20 E-value=2.1e+02 Score=30.07 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCC---------Cc---HHHHHHHHHHHCCCeeEEeeecccCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN---------GL---VPRTIWLLKDRYPDLVIYTDVALDPYS 225 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~---------gl---V~rAIr~iK~~fPdl~VitDVcLc~YT 225 (327)
++.+.+..+.++||++|-|-|+-+-.....-| |++- |- +.+-|.++.++ .|-||-||-+-...
T Consensus 112 gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~G---Y~~~~~~~~~~~~G~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~ 186 (542)
T TIGR02402 112 AAIEKLPYLADLGITAIELMPVAQFPGTRGWG---YDGVLPYAPHNAYGGPDDLKALVDAAHGL--GLGVILDVVYNHFG 186 (542)
T ss_pred HHHHhhHHHHHcCCCEEEeCccccCCCCCCCC---CCccCccccccccCCHHHHHHHHHHHHHC--CCEEEEEEccCCCC
Confidence 68888999999999999999963211111112 2222 11 44445555444 79999999886532
Q ss_pred CCC--------------cceeecCCCccccH---HHHHHHHHHHHHHHH-cCCCee---cCCCCCCc----hHHHHHHHH
Q 020319 226 SDG--------------HDGIVREDGVIMND---ETVHQLCKQAVSQAR-AGADVV---SPSDMMDG----RVGAIRAAL 280 (327)
Q Consensus 226 shG--------------HcGIl~~~G~IdND---~Tv~~Lak~Als~A~-AGADiV---APSDMMDG----RV~aIR~aL 280 (327)
..| |++--+ +=..+|. +..+.+...+.-..+ -|.|=+ +-..|.|. -...+|+.|
T Consensus 187 ~~~~~~~~~~~y~~~~~~~~wg~-~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~ 265 (542)
T TIGR02402 187 PEGNYLPRYAPYFTDRYSTPWGA-AINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREV 265 (542)
T ss_pred CccccccccCccccCCCCCCCCC-ccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHH
Confidence 211 111000 0012333 677778887877775 477643 44455553 467888888
Q ss_pred HHCC
Q 020319 281 DAEG 284 (327)
Q Consensus 281 D~~G 284 (327)
.+..
T Consensus 266 ~~~~ 269 (542)
T TIGR02402 266 HELA 269 (542)
T ss_pred HHHC
Confidence 7653
No 322
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.13 E-value=1.1e+02 Score=25.44 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecc
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcL 221 (327)
.+.+.++++.++|+++|++++- ..-.++++..++. ++-|+..=|+
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g-----------------~~~~~~~~~a~~~--gi~vigp~C~ 111 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG-----------------AESEELIEAAREA--GIRVIGPNCL 111 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT-----------------S--HHHHHHHHHT--T-EEEESS-H
T ss_pred HHHHHHHHHHHcCCCEEEEEcc-----------------hHHHHHHHHHHHc--CCEEEeCCcc
Confidence 4788999999999999999873 3345677777774 5666655553
No 323
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=31.08 E-value=76 Score=30.93 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
.+.++++++.|+++||+=+. + .+ +++|=-..+.+..+-..+ ++.|-..+ ||-|= .+++.+
T Consensus 89 ~~~i~~ai~~GftSVm~d~S---~-l~------~eEni~~t~~v~~~a~~~-gv~vE~El--------G~i~g-~ed~~~ 148 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGS---H-LP------VEENLKLAKEVVEKAHAK-GISVEAEV--------GTIGG-EEDGII 148 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCC---C-CC------HHHHHHHHHHHHHHHHHc-CCEEEEec--------CcccC-cCcccc
Confidence 45778999999999998442 1 11 222212222222222332 45443332 22210 022222
Q ss_pred ccH--HHHHHHHHHHHHHHHcCCCeecCC--CC---CCc--------hHHHHHHHH
Q 020319 240 MND--ETVHQLCKQAVSQARAGADVVSPS--DM---MDG--------RVGAIRAAL 280 (327)
Q Consensus 240 dND--~Tv~~Lak~Als~A~AGADiVAPS--DM---MDG--------RV~aIR~aL 280 (327)
... -+.+ +|..+.+.|+|.+|.| -+ ..+ ++..|++++
T Consensus 149 g~s~~t~pe----ea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~ 200 (293)
T PRK07315 149 GKGELAPIE----DAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV 200 (293)
T ss_pred CccCCCCHH----HHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc
Confidence 211 2333 5556668999999999 55 544 567777766
No 324
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.95 E-value=3.8e+02 Score=27.37 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=33.3
Q ss_pred EEEeeCCC-C---cccCCCCCceE-ecchhhHHHHHHHHHHcCCCeEEEeec
Q 020319 133 LFIHEGEE-D---TPIGAMPGCYR-LGWRHGLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 133 lFV~eg~~-~---~~I~SMPGv~r-~sid~~l~~ev~~~~~lGI~sVlLFgv 179 (327)
|-|.+|=. . =.|+.+-|-+| .+++ .+++|++.+++.|++.|.|.+.
T Consensus 153 l~isrGC~~~CsFC~ip~~rG~~rsr~~e-~Vv~Ei~~l~~~G~~ei~l~~~ 203 (445)
T PRK14340 153 VPVMRGCNNMCAFCVVPFTRGRERSHPFA-SVLDEVRALAEAGYREITLLGQ 203 (445)
T ss_pred EEeccCCCCCCCCCCcccccCCCcCCCHH-HHHHHHHHHHHCCCeEEEEeec
Confidence 55666632 1 24555556555 4775 6999999999999999999885
No 325
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.94 E-value=3.2e+02 Score=25.66 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlL-Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~ 236 (327)
+..+.++.+.+.|...|-| |+- |.. + ..|.+-.+.-..+.+-++.+|+.. ++-|+.-+-.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~c-P~~-~-~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~--------------- 163 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISC-PNV-K-GGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTP--------------- 163 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC-CCC-C-CCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCC---------------
Confidence 5778888888899999977 663 432 2 123333344467888899999876 5555544321
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 237 GVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 237 G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
+-+ .+.+.|-...++|||.|.-+
T Consensus 164 ---~~~----~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 164 ---NVT----DIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred ---Cch----hHHHHHHHHHHcCCCEEEEE
Confidence 011 23334455568999977543
No 326
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=30.94 E-value=28 Score=33.18 Aligned_cols=70 Identities=27% Similarity=0.328 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcc-e---eecCCCccccHHHHHHH--------HHHHHHHHHcCCCee
Q 020319 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHD-G---IVREDGVIMNDETVHQL--------CKQAVSQARAGADVV 263 (327)
Q Consensus 197 glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHc-G---Il~~~G~IdND~Tv~~L--------ak~Als~A~AGADiV 263 (327)
..+-+||+.++++.++ ..|+.- |..|||.-+|- | ++. ....|-+.++.| .+.+..+.+||||+|
T Consensus 121 ~~~leai~~l~~~~~~~~pv~g~-v~gP~Tla~~l~g~~~~~~--~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I 197 (339)
T PRK06252 121 PTVLEAIKILKEKVGEEVPIIAG-LTGPISLASSLMGPKNFLK--WLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVI 197 (339)
T ss_pred hHHHHHHHHHHHHcCCcCceeCc-cCChHHHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 3566899999999984 555543 67888876541 1 111 122344444443 335556788999998
Q ss_pred cCCCCC
Q 020319 264 SPSDMM 269 (327)
Q Consensus 264 APSDMM 269 (327)
.=.|-.
T Consensus 198 ~i~d~~ 203 (339)
T PRK06252 198 CIADPS 203 (339)
T ss_pred EeCCCC
Confidence 777654
No 327
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=30.82 E-value=1.4e+02 Score=28.74 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=40.0
Q ss_pred CCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
+|++.++..++ .+.+++++...+++|++=++ . .+.|.. ..+.+.+++ |+.+.+++ ++++|.|=+.+.+..
T Consensus 166 ~~~~~~~~~~d--~~~le~~i~~~~~aii~e~~-~----~~~G~~-~~~~~~l~~-l~~l~~~~-gi~lI~DEv~~g~g~ 235 (401)
T PRK00854 166 TPGFRVVPFGD--AEALEAAITPNTVAFLVEPI-Q----GEAGVI-IPPAGYFTR-VRELCTAN-NVTLILDEIQTGLGR 235 (401)
T ss_pred CCCeEEeCCCC--HHHHHHHhCCCeEEEEEccc-c----CCCCCc-CCCHHHHHH-HHHHHHHc-CCEEEEechhhCCCC
Confidence 56776665432 56677777656666665332 1 123322 223344554 44444444 799999988765544
Q ss_pred CC
Q 020319 227 DG 228 (327)
Q Consensus 227 hG 228 (327)
.|
T Consensus 236 ~g 237 (401)
T PRK00854 236 TG 237 (401)
T ss_pred Cc
Confidence 44
No 328
>PLN03156 GDSL esterase/lipase; Provisional
Probab=30.80 E-value=1.5e+02 Score=29.32 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcc----------c-ccCc-----CCCCcHHHHHHHHHHHCCCe-eEEeee
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPT----------G-DEAY-----NDNGLVPRTIWLLKDRYPDL-VIYTDV 219 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~----------G-s~A~-----n~~glV~rAIr~iK~~fPdl-~VitDV 219 (327)
+.+.++++.++|.+.|+++++ |+--..+. + .+.+ .-|..+.+.+..+++++|++ +++.|+
T Consensus 197 ~~~~i~~Ly~~GAR~~~V~~l-pplGc~P~~~~~~~~~~~~C~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~ 273 (351)
T PLN03156 197 AENFVKKLYRLGARKISLGGL-PPMGCLPLERTTNLMGGSECVEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNP 273 (351)
T ss_pred HHHHHHHHHHcCCCEEEecCC-CccccCHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeh
Confidence 346789999999999999985 44322221 1 0001 12335667788888899985 445554
No 329
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=30.66 E-value=3.1e+02 Score=27.03 Aligned_cols=51 Identities=10% Similarity=0.189 Sum_probs=33.7
Q ss_pred CCCceEecchhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC
Q 020319 147 MPGCYRLGWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY 210 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev-~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f 210 (327)
+|....++.+ .++++ +++.++|.+.++|.. ++. ....|...+....|++.-
T Consensus 6 ~p~~i~fG~g--~l~~l~~~l~~~g~~r~lvvt--~~~---------~~~~g~~~~v~~~L~~~~ 57 (379)
T TIGR02638 6 LNETSYFGAG--AIEDIVDEVKRRGFKKALVVT--DKD---------LIKFGVADKVTDLLDEAG 57 (379)
T ss_pred CCCeEEECcC--HHHHHHHHHHhcCCCEEEEEc--Ccc---------hhhccchHHHHHHHHHCC
Confidence 5777778864 45555 467778999888853 221 223478888888888653
No 330
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=30.61 E-value=2.4e+02 Score=27.77 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
.+.++.+.+.|+..+.+.|.... .+ -.|. .--..|+.+|+.++++-||.
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~-~~-y~~~-------ad~~~I~~vk~~~~~ipvi~ 203 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRA-QG-YLGP-------ADWDYIKELKEAVPSIPVIA 203 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHH-hc-CCCc-------cCHHHHHHHHHhCCCCeEEe
Confidence 45556678889999999997432 11 1122 33469999999999876665
No 331
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=30.30 E-value=1.5e+02 Score=26.99 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~Y 224 (327)
+...++.+.+.|.++|.+--.+.. +.+++.|.++||++-|+| .++|+-
T Consensus 138 l~~ai~~L~~~G~~~I~v~~ll~~-----------------~~gl~~l~~~~p~v~i~~-~~id~~ 185 (207)
T TIGR01091 138 MIAALDLLKKRGAKKIKVLSIVAA-----------------PEGIEAVEKAHPDVDIYT-AAIDEK 185 (207)
T ss_pred HHHHHHHHHHcCCCEEEEEEEecC-----------------HHHHHHHHHHCCCCEEEE-EEECCC
Confidence 778888999999999777654321 358899999999988886 566663
No 332
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=29.66 E-value=2.7e+02 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=19.5
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEee
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFP 178 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFg 178 (327)
++.+ .+.+.++++.++|+..|.++|
T Consensus 37 l~~e-~~~~ii~~~~~~g~~~v~~~G 61 (358)
T TIGR02109 37 LTTE-EWTDVLTQAAELGVLQLHFSG 61 (358)
T ss_pred CCHH-HHHHHHHHHHhcCCcEEEEeC
Confidence 5564 577778888899999988876
No 333
>PLN02389 biotin synthase
Probab=29.32 E-value=1.4e+02 Score=30.13 Aligned_cols=57 Identities=7% Similarity=0.122 Sum_probs=35.0
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP 211 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP 211 (327)
+.-+.++.+ ++++.++++.+.|++.|.+ + . ..++..+... +-.-+.++|+.||+..+
T Consensus 111 ~~~~~Ls~E-eIl~~a~~~~~~G~~~~~i-v--t-s~rg~~~e~~--~~e~i~eiir~ik~~~l 167 (379)
T PLN02389 111 KAQKLMSKD-DVLEAAKRAKEAGSTRFCM-G--A-AWRDTVGRKT--NFNQILEYVKEIRGMGM 167 (379)
T ss_pred cccccCCHH-HHHHHHHHHHHcCCCEEEE-E--e-cccCCCCChh--HHHHHHHHHHHHhcCCc
Confidence 334457886 7999999999999999776 1 1 1122111100 01457778888886433
No 334
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.23 E-value=1.5e+02 Score=30.33 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=45.9
Q ss_pred eeEEEeeCCC-C---cccCCCCCceEe-cchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCC-------c
Q 020319 131 YPLFIHEGEE-D---TPIGAMPGCYRL-GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG-------L 198 (327)
Q Consensus 131 ~PlFV~eg~~-~---~~I~SMPGv~r~-sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~g-------l 198 (327)
..|-|.+|=. . =.++..-|-+|. +++ .+++|++.+++.|++-|.|.+. + .++..++.++ -
T Consensus 170 a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e-~Vv~Ei~~l~~~g~~eI~l~~~--~-----~~~y~~d~~~~~~~~~~~ 241 (467)
T PRK14329 170 AFVSIMRGCDNMCTFCVVPFTRGRERSRDPE-SILNEVRDLFAKGYKEVTLLGQ--N-----VDSYLWYGGGLKKDEAVN 241 (467)
T ss_pred EEEEeccCcccCCCCCccccccCCcccCCHH-HHHHHHHHHHHCCCeEEEEEee--c-----ccccccccCCcccccccc
Confidence 3455556632 1 245566676665 775 7999999999999999998874 1 1111122112 3
Q ss_pred HHHHHHHHHHHCCC
Q 020319 199 VPRTIWLLKDRYPD 212 (327)
Q Consensus 199 V~rAIr~iK~~fPd 212 (327)
+.+-++.|++..++
T Consensus 242 l~~Ll~~l~~~~~~ 255 (467)
T PRK14329 242 FAQLLEMVAEAVPD 255 (467)
T ss_pred HHHHHHHHHhcCCC
Confidence 66677777766554
No 335
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=29.09 E-value=82 Score=36.38 Aligned_cols=134 Identities=21% Similarity=0.246 Sum_probs=74.3
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCccee
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGI 232 (327)
|+++ -+++.++++.+.|+..|.| ||..|.. .|. -+.+-|+.||+++ ++ |..-|.||-.
T Consensus 686 ~~l~-y~~~~ak~l~~~Gad~I~i--------kDt~Gll--~P~-~~~~Lv~~lk~~~-~~---------pi~~H~Hdt~ 743 (1143)
T TIGR01235 686 YDLK-YYTNLAVELEKAGAHILGI--------KDMAGLL--KPA-AAKLLIKALREKT-DL---------PIHFHTHDTS 743 (1143)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEE--------CCCcCCc--CHH-HHHHHHHHHHHhc-CC---------eEEEEECCCC
Confidence 3443 4677888888888876543 5555542 222 2556778888876 33 3445777632
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCCch----HHHHHHHHHHCCCC-Cc---eeeehhhhhhc---
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVV--SPSDMMDGR----VGAIRAALDAEGFQ-HV---SIMSYTAKYAS--- 299 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiV--APSDMMDGR----V~aIR~aLD~~Gf~-~v---~IMSYSAKyAS--- 299 (327)
= --+- ..+.-++||||+| |=+.|--|. +..+=.+|...|+. .+ .|...+ .|..
T Consensus 744 G---la~a----------n~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is-~~~~~vr 809 (1143)
T TIGR01235 744 G---IAVA----------SMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDPGLNVAWIRELS-AYWEAVR 809 (1143)
T ss_pred C---cHHH----------HHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHH-HHHHHHH
Confidence 1 0111 3455689999998 334442222 45666678777762 22 333334 4555
Q ss_pred cccchhHHHhhcCCCCCCCcccCCC
Q 020319 300 SFYGPFREALDSNPRFGDKKTKLQR 324 (327)
Q Consensus 300 sfYGPFRdAa~Sap~fGDRktYQmd 324 (327)
.+|.||-.-. .+|. .+=-.|||+
T Consensus 810 ~~y~~~~~~~-~~~~-~~v~~~~~P 832 (1143)
T TIGR01235 810 NLYAAFESDL-KGPA-SEVYLHEMP 832 (1143)
T ss_pred HHhhcCCCCC-cCCC-cCeEEecCC
Confidence 5899984222 1221 244456665
No 336
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=28.88 E-value=86 Score=28.64 Aligned_cols=104 Identities=22% Similarity=0.271 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC--CeeEEeeecccCCCCCCcceeecCCC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP--dl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
+.++++++++|...|-+-..+.. .+ ++. ..-+.+-|+.+++..- .|-||.- + | +. +.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~-~~----~~~---~~~~~~~i~~v~~~~~~~gl~vIlE-~---~--------l~-~~ 137 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGA-LG----SGN---EDEVIEEIAAVVEECHKYGLKVILE-P---Y--------LR-GE 137 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHH-HH----TTH---HHHHHHHHHHHHHHHHTSEEEEEEE-E---C--------EC-HH
T ss_pred HHHHHHHHHcCCceeeeeccccc-cc----ccc---HHHHHHHHHHHHHHHhcCCcEEEEE-E---e--------cC-ch
Confidence 78999999999999877433211 11 111 2445566666666542 2444443 2 1 21 12
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCC-----CCCchHHHHHHHHHHCC
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSD-----MMDGRVGAIRAALDAEG 284 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSD-----MMDGRV~aIR~aLD~~G 284 (327)
.+.++...+.+.+.+-.-+++|||+|=-|- -=.+-+..+|+......
T Consensus 138 ~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 138 EVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp HBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHS
T ss_pred hhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcC
Confidence 344444555666666666889999994432 22245777888887554
No 337
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=28.75 E-value=1.6e+02 Score=33.32 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=53.5
Q ss_pred cccccCcCCCCc-----HHHHHHHHHHHCCCeeEEeeecccCCCCCCc--ceeec-----------CCCccc--------
Q 020319 187 PTGDEAYNDNGL-----VPRTIWLLKDRYPDLVIYTDVALDPYSSDGH--DGIVR-----------EDGVIM-------- 240 (327)
Q Consensus 187 ~~Gs~A~n~~gl-----V~rAIr~iK~~fPdl~VitDVcLc~YTshGH--cGIl~-----------~~G~Id-------- 240 (327)
+.||.|.||+|. ..+.|+++.++ .|-||-||..-+-...|. ..+++ .+|.+.
T Consensus 389 PegSYatdp~g~~Ri~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~ 466 (898)
T TIGR02103 389 PEGSYATDPEGPARIKEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNT 466 (898)
T ss_pred cChhhccCCCCchHHHHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCC
Confidence 446677788875 22333333332 699999998765333221 01111 123222
Q ss_pred ---cHHHHHHHHHHHHHHH-HcCCCee---cCCCCCCchHHHHHHHHHHC
Q 020319 241 ---NDETVHQLCKQAVSQA-RAGADVV---SPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 241 ---ND~Tv~~Lak~Als~A-~AGADiV---APSDMMDGRV~aIR~aLD~~ 283 (327)
|...-+.+.....-.+ +-|.|=+ +-..|....+..+|++|++.
T Consensus 467 a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i 516 (898)
T TIGR02103 467 ATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKAL 516 (898)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHh
Confidence 3444444555555545 5787743 34566667889999998885
No 338
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=28.74 E-value=71 Score=30.27 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=51.3
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCc---HHHHHHHHHHHCCCeeEEeeecccCCCCCCc
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL---VPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~gl---V~rAIr~iK~~fPdl~VitDVcLc~YTshGH 229 (327)
++.+ ++++.+++.++.|-.-|-+=+. .. .-|..-.+++-- +..+|+.+++.+ ++.| ++|+|....-
T Consensus 20 ~~~~-~~~~~a~~~~~~GA~iIDIG~~-st----~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~pl----siDT~~~~vi 88 (257)
T TIGR01496 20 LSVD-KAVAHAERMLEEGADIIDVGGE-ST----RPGADRVSPEEELNRVVPVIKALRDQP-DVPI----SVDTYRAEVA 88 (257)
T ss_pred CCHH-HHHHHHHHHHHCCCCEEEECCC-CC----CCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE----EEeCCCHHHH
Confidence 4665 6999999999999988877222 11 112222222222 666777777765 4544 4555543221
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 230 cGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
---+...=.+-||-|.+..-++.-..++.||.+|.
T Consensus 89 ~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 89 RAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEE
Confidence 11111101222332222211222235577999988
No 339
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=28.63 E-value=1.2e+02 Score=28.94 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=24.6
Q ss_pred CCCceEecchhhHHHHHHHHHHcCCCeEEEee
Q 020319 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP 178 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~~~~lGI~sVlLFg 178 (327)
|.|+-..+.. +.++.++.+.++|..++++.|
T Consensus 73 i~gv~~~~t~-~ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 73 APGTGALNHD-ETLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred EEECCcchHH-HHHHHHHHHHHcCCCEEEEcC
Confidence 4555555664 588999999999999999976
No 340
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=28.55 E-value=1.7e+02 Score=28.18 Aligned_cols=117 Identities=12% Similarity=0.220 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCC--------c
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG--------H 229 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshG--------H 229 (327)
+++++++++++.|.+++.+- +.. + .-.+-++++++.+|++-++.|.+ +.||... +
T Consensus 135 ~~~~~a~~~~~~Gf~~~KiK--v~~-----------~---~d~~~v~~vr~~~~~~~l~vDaN-~~~~~~~a~~~~~l~~ 197 (324)
T TIGR01928 135 QMLKQIESLKATGYKRIKLK--ITP-----------Q---IMHQLVKLRRLRFPQIPLVIDAN-ESYDLQDFPRLKELDR 197 (324)
T ss_pred HHHHHHHHHHHcCCcEEEEE--eCC-----------c---hhHHHHHHHHHhCCCCcEEEECC-CCCCHHHHHHHHHHhh
Confidence 58899999999999998874 221 0 01367899999999999999997 6677643 1
Q ss_pred ceeec-CCCc-cccHHHHHHHHH-----------------HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCcee
Q 020319 230 DGIVR-EDGV-IMNDETVHQLCK-----------------QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSI 290 (327)
Q Consensus 230 cGIl~-~~G~-IdND~Tv~~Lak-----------------~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~I 290 (327)
.++.. |+=. .+|-+.+..|.+ ..-...+.++|++-|-=|--|=|...|+..+.+--.++.+
T Consensus 198 ~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~ 277 (324)
T TIGR01928 198 YQLLYIEEPFKIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKV 277 (324)
T ss_pred CCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeE
Confidence 12210 1110 122233444433 2233345569999998888898887777665543334444
Q ss_pred e
Q 020319 291 M 291 (327)
Q Consensus 291 M 291 (327)
|
T Consensus 278 ~ 278 (324)
T TIGR01928 278 W 278 (324)
T ss_pred E
Confidence 4
No 341
>PRK12568 glycogen branching enzyme; Provisional
Probab=28.20 E-value=5.9e+02 Score=28.39 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=64.7
Q ss_pred hHHHH-HHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCC---------c---HHHHHHHHHHHCCCeeEEeeecccCC
Q 020319 158 GLVQE-VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG---------L---VPRTIWLLKDRYPDLVIYTDVALDPY 224 (327)
Q Consensus 158 ~l~~e-v~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~g---------l---V~rAIr~iK~~fPdl~VitDVcLc~Y 224 (327)
++.++ +.-+.++|+++|-|-|+.. . ...++..|++.| - ..+-|.++.++ .|-||-|+-.-.+
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e-~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~ 344 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITE-H--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRA--GIGVILDWVSAHF 344 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccc-C--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHC--CCEEEEEeccccC
Confidence 56666 5789999999999999632 1 112334444333 2 23333333333 6999999998877
Q ss_pred CCCCcc-----e--eec-C---CC----------ccccHHHHHHHHHHHHHHHH-cCCCee---cCCCC
Q 020319 225 SSDGHD-----G--IVR-E---DG----------VIMNDETVHQLCKQAVSQAR-AGADVV---SPSDM 268 (327)
Q Consensus 225 TshGHc-----G--Il~-~---~G----------~IdND~Tv~~Lak~Als~A~-AGADiV---APSDM 268 (327)
...+|. | +.. . .| ...|.+..+.|...++-..+ -|.|=+ |-+.|
T Consensus 345 ~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~m 413 (730)
T PRK12568 345 PDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASM 413 (730)
T ss_pred CccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHh
Confidence 765551 1 110 0 01 23577888889999998885 477643 44455
No 342
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=28.20 E-value=3.3e+02 Score=26.68 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe--eec----ccCCCCCCcce
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--DVA----LDPYSSDGHDG 231 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit--DVc----Lc~YTshGHcG 231 (327)
.+++.++.+.+.|+..+.+-+.... .+-..|.....-...--..|+.+|+.++++-||. ||. ...+- .|-+|
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~Rt~~-~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l-~~aDg 229 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHARKAW-LKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL-QHVDG 229 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCchh-hcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH-hcCCE
Confidence 4788888999999999998764210 1101111000000112357888999888766665 221 00000 14566
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
+.-..|-+.|...+..+ ..+-. |... |..-.+.++..+++.++..
T Consensus 230 VmIGRa~l~nP~~~~~~----~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~ 274 (333)
T PRK11815 230 VMIGRAAYHNPYLLAEV----DRELF-GEPA--PPLSRSEVLEAMLPYIERH 274 (333)
T ss_pred EEEcHHHHhCCHHHHHH----HHHhc-CCCC--CCCCHHHHHHHHHHHHHHH
Confidence 66434556666555433 12112 4432 2122345555555555553
No 343
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.09 E-value=3.9e+02 Score=23.47 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
++..++-+..+..=.+|.|+|- . ++.+.++...|++.||++-|..
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~-~--------------~~~~~~~~~~l~~~yP~l~ivg 79 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGG-S--------------EEVLEKAAANLRRRYPGLRIVG 79 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeC-C--------------HHHHHHHHHHHHHHCCCeEEEE
Confidence 3565555544444447778884 1 1578899999999999988764
No 344
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=28.05 E-value=93 Score=30.99 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=47.5
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
+..+|...+ .+++.++.+.+.|+..|.|- |..|. ..|+ -+.+.|+.+++.+ ++ +..-|
T Consensus 137 ed~~r~~~~-~l~~~~~~~~~~Ga~~I~l~--------DT~G~--~~P~-~v~~lv~~l~~~~-~~---------~l~~H 194 (378)
T PRK11858 137 EDASRTDLD-FLIEFAKAAEEAGADRVRFC--------DTVGI--LDPF-TMYELVKELVEAV-DI---------PIEVH 194 (378)
T ss_pred ccCCCCCHH-HHHHHHHHHHhCCCCEEEEe--------ccCCC--CCHH-HHHHHHHHHHHhc-CC---------eEEEE
Confidence 344455554 57777777777777765441 33332 2222 2445667777665 21 34567
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMM 269 (327)
+|+-. |- + ..-++.-.+|||++|--|=.-
T Consensus 195 ~Hnd~----Gl----A-----~AN~laAv~aGa~~vd~tv~G 223 (378)
T PRK11858 195 CHNDF----GM----A-----TANALAGIEAGAKQVHTTVNG 223 (378)
T ss_pred ecCCc----CH----H-----HHHHHHHHHcCCCEEEEeecc
Confidence 77532 20 1 112455568999998665443
No 345
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.01 E-value=6.5e+02 Score=25.49 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeec
Q 020319 158 GLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgv 179 (327)
...+.++.+.+.|+..|.+++.
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgr 163 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGT 163 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEecc
Confidence 3788888999999999999986
No 346
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=27.99 E-value=2.2e+02 Score=29.98 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCC---------C---cHHHHHHHHHHHCCCeeEEeeecccCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN---------G---LVPRTIWLLKDRYPDLVIYTDVALDPY 224 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~---------g---lV~rAIr~iK~~fPdl~VitDVcLc~Y 224 (327)
++.+.+..+.++||++|-|=|+.+.. ....| |+.. | -+.+.|++++++ .|-||.|+-+.+-
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~~-~~~~g---Y~~~d~~~id~~~Gt~~d~~~lv~~~h~~--gi~vilD~V~NH~ 106 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVSP-QVDNG---YDVANYTAIDPTYGTLDDFDELVAQAKSR--GIRIILDMVFNHT 106 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCCC-CCCCC---CCcccCCCcCcccCCHHHHHHHHHHHHHC--CCEEEEEECCCCc
Confidence 68889999999999999998864221 11112 2221 2 244555555555 7999999988643
No 347
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=27.99 E-value=2.3e+02 Score=24.61 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=14.8
Q ss_pred cCCCCcHHHHHHHHHH-HCC
Q 020319 193 YNDNGLVPRTIWLLKD-RYP 211 (327)
Q Consensus 193 ~n~~glV~rAIr~iK~-~fP 211 (327)
||+...+.++|+.|.+ .+|
T Consensus 10 yNe~~~l~~~L~sl~~q~~~ 29 (232)
T cd06437 10 FNEKYVVERLIEAACALDYP 29 (232)
T ss_pred CCcHHHHHHHHHHHHhcCCC
Confidence 7777888899988875 455
No 348
>PRK12376 putative translaldolase; Provisional
Probab=27.96 E-value=66 Score=30.67 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=61.4
Q ss_pred cCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCC-CCcce-----eecCCCccccHHHHHHHHHHHH--HHHHc--CCCe
Q 020319 193 YNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS-DGHDG-----IVREDGVIMNDETVHQLCKQAV--SQARA--GADV 262 (327)
Q Consensus 193 ~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTs-hGHcG-----Il~~~G~IdND~Tv~~Lak~Al--s~A~A--GADi 262 (327)
.+.++.+.+|.++ .+..|+++|= -|-|. .|-.| .|...| |.--.|+=--..||+ ..|.+ ||++
T Consensus 68 ~d~~~mv~eA~~l-~~~~~nv~VK-----IP~T~~~G~~gl~Ai~~L~~~G-I~vn~T~vfs~~Qa~~a~~A~ag~ga~y 140 (236)
T PRK12376 68 DDLETMEKEAEKI-ASLGENVYVK-----IPITNTKGESTIPLIKKLSADG-VKLNVTAIFTIEQVKEVVDALTPGVPAI 140 (236)
T ss_pred CCHHHHHHHHHHH-HHhCCCeEEE-----ECCcCccchhHHHHHHHHHHCC-CeEEEeeecCHHHHHHHHHHhcCCCCeE
Confidence 4567888888775 5567987662 36774 56445 333344 333455555567887 44444 5999
Q ss_pred ecCC------CCCCc--hHHHHHHHHHHCCCCCceeeehhhhh
Q 020319 263 VSPS------DMMDG--RVGAIRAALDAEGFQHVSIMSYTAKY 297 (327)
Q Consensus 263 VAPS------DMMDG--RV~aIR~aLD~~Gf~~v~IMSYSAKy 297 (327)
|||= --.|| .|..|++.++.. .++-||+=|.|=
T Consensus 141 ispfvgR~dd~g~D~~~~i~~i~~i~~~~--~~tkILaASiR~ 181 (236)
T PRK12376 141 VSVFAGRIADTGVDPVPLMKEALAICHSK--PGVELLWASPRE 181 (236)
T ss_pred EEEecchhhhcCCCcHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 9992 22354 567889999763 589999766553
No 349
>PLN02757 sirohydrochlorine ferrochelatase
Probab=27.90 E-value=4.3e+02 Score=23.38 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEE
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi 216 (327)
.|.+.++++.+.|++.|+++|..=- .|.-. +.=+++.+..+++++|++-|.
T Consensus 59 sl~eal~~l~~~g~~~vvVvP~FL~-----~G~H~---~~DIp~~v~~~~~~~p~~~i~ 109 (154)
T PLN02757 59 SIKDAFGRCVEQGASRVIVSPFFLS-----PGRHW---QEDIPALTAEAAKEHPGVKYL 109 (154)
T ss_pred CHHHHHHHHHHCCCCEEEEEEhhhc-----CCcch---HhHHHHHHHHHHHHCCCcEEE
Confidence 3667778888899999999887321 22222 123688999999999997665
No 350
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=27.85 E-value=4.2e+02 Score=23.33 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCC-CcHHHHHHHHHHHCC
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYP 211 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~-glV~rAIr~iK~~fP 211 (327)
|+++..... .+.++++.+.+.|++.|=| + .+| |. +.++ ....+.++.||+.++
T Consensus 8 ~s~~~~~~~-~~~~~~~~~~~~G~~~i~l-~-----~~d--~~--~~~~~~~~~~~~~~i~~~~~ 61 (220)
T PRK05581 8 PSILSADFA-RLGEEVKAVEAAGADWIHV-D-----VMD--GH--FVPNLTIGPPVVEAIRKVTK 61 (220)
T ss_pred cchhcCCHH-HHHHHHHHHHHcCCCEEEE-e-----Ccc--CC--cCCCcCcCHHHHHHHHhcCC
Confidence 556665554 5889999999999998776 3 233 21 2222 134678999998765
No 351
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=27.82 E-value=93 Score=28.68 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=40.7
Q ss_pred CCCcHHHHHHHHHHH---CCCeeEEeeecccCCCCCC-cceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 020319 195 DNGLVPRTIWLLKDR---YPDLVIYTDVALDPYSSDG-HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 195 ~~glV~rAIr~iK~~---fPdl~VitDVcLc~YTshG-HcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAP 265 (327)
.+.-+.+.++.++++ -.||+|.-..++.+|.... +..+........++++++.|.+.|-.+ |..||.|
T Consensus 25 ~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~---~i~ii~g 96 (287)
T cd07568 25 KEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEY---NMVLILP 96 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHC---CEEEEEE
Confidence 334455666666643 4688888888888875321 112221111233567888888887655 8888875
No 352
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=27.55 E-value=4.3e+02 Score=26.32 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=33.9
Q ss_pred CCCceEecchhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC
Q 020319 147 MPGCYRLGWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY 210 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev-~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f 210 (327)
+|....++.+ .++++ +++.++|.+.++|.. +.. ....|.+.+....|+++-
T Consensus 8 ~p~~i~~G~g--~~~~l~~~~~~~g~~~~livt--~~~---------~~~~g~~~~v~~~L~~~~ 59 (383)
T PRK09860 8 IPSVNVIGAD--SLTDAMNMMADYGFTRTLIVT--DNM---------LTKLGMAGDVQKALEERN 59 (383)
T ss_pred cCCeEEECcC--HHHHHHHHHHhcCCCEEEEEc--Ccc---------hhhCccHHHHHHHHHHcC
Confidence 4666677864 45555 457788999988854 111 233588888888888763
No 353
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=27.50 E-value=94 Score=30.71 Aligned_cols=98 Identities=23% Similarity=0.274 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccccCcCCCCc---HHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGL---VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~-~KD~~Gs~A~n~~gl---V~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
.+.++.+.+.|+..|-+|--+.+. .+...+ .+.+-. +.++|+..|+..-+ |+++. +
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~i~~ak~~g~~------v~~~~-----------e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLR---KDRAWVLERLARLVSFARDRGLF------VSVGG-----------E 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhC---cCHHHHHHHHHHHHHHHHhCCCE------EEEee-----------c
Confidence 566788999999999998644321 111111 111222 34566666665322 22211 1
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
|..--+.+-+..+++ ...++|||.|.-.|+.= -.|..+|+.+
T Consensus 135 d~~r~~~~~l~~~~~---~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 135 DASRADPDFLVELAE---VAAEAGADRFRFADTVGILDPFSTYELVRALRQAV 184 (365)
T ss_pred CCCCCCHHHHHHHHH---HHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhc
Confidence 222223444444444 44678999999999764 2455666654
No 354
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=27.50 E-value=2.9e+02 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=19.0
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEee
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFP 178 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFg 178 (327)
++.+ ++.+.++++.++|+..|.++|
T Consensus 46 ~~~e-~~~~ii~~~~~~g~~~v~~~G 70 (378)
T PRK05301 46 LSTE-EWIRVLREARALGALQLHFSG 70 (378)
T ss_pred CCHH-HHHHHHHHHHHcCCcEEEEEC
Confidence 4554 577778888889998888876
No 355
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=27.42 E-value=4e+02 Score=26.71 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=37.0
Q ss_pred CCCCceEecchhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCee
Q 020319 146 AMPGCYRLGWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (327)
Q Consensus 146 SMPGv~r~sid~~l~~ev-~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~ 214 (327)
.+|....++.+ .++++ +++.++|.+.+++.+ +.. ....|++.+.+..|+++--+..
T Consensus 25 ~~P~~i~fG~g--~~~~l~~~~~~~g~~~~lvv~--~~~---------~~~~g~~~~v~~~L~~~gi~~~ 81 (395)
T PRK15454 25 SVPPVTLCGPG--AVSSCGQQAQTRGLKHLFVMA--DSF---------LHQAGMTAGLTRSLAVKGIAMT 81 (395)
T ss_pred ecCCeEEECcC--HHHHHHHHHHhcCCCEEEEEc--Ccc---------hhhCccHHHHHHHHHHcCCeEE
Confidence 35777888864 45555 456678999888864 222 2235899998888987643333
No 356
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=27.41 E-value=1.6e+02 Score=34.10 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCceeeEEEeeCCCCcccC-CCCCceEecchhhHHHHHHHHHHcCCCeEEEeecC
Q 020319 127 ANFVYPLFIHEGEEDTPIG-AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV 180 (327)
Q Consensus 127 ~dLI~PlFV~eg~~~~~I~-SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi 180 (327)
+-.||=+.|.+=.....++ .+.+ .+=... .+.+++..+.+|||++|-|-|+.
T Consensus 451 d~vIYElHVrdFt~d~~~~~~~~~-~~Gtf~-gl~ekLdYLkeLGVT~I~LmPv~ 503 (1111)
T TIGR02102 451 DAIIYEAHVRDFTSDPAIAGDLTA-QFGTFA-AFVEKLDYLQDLGVTHIQLLPVL 503 (1111)
T ss_pred ceEEEEEechhhCcCCCCCccccc-CCcCHH-HHHHhHHHHHHcCCCEEEEcCcc
Confidence 3467878777533221111 1100 112343 68899999999999999998864
No 357
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=27.39 E-value=4.2e+02 Score=25.77 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCceEecchhhHHHHHH-HHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCee
Q 020319 148 PGCYRLGWRHGLVQEVA-KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~-~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~ 214 (327)
|..+.++-+ .++++. ++.++|.+.++|.. +.. .++ .+...+.+..|++..-+..
T Consensus 1 P~~i~~G~g--~l~~l~~~l~~~~~~~~lvv~--~~~--------~~~-~~~~~~v~~~L~~~~~~~~ 55 (370)
T cd08551 1 PTRIIFGAG--AIEKLGEEIKNLGGRKALIVT--DPG--------LVK-TGVLDKVIDSLKEAGIEVV 55 (370)
T ss_pred CCeEEECcC--HHHHHHHHHHHcCCCeEEEEe--Ccc--------hhh-CccHHHHHHHHHHcCCeEE
Confidence 455667753 455554 56678998888764 111 123 5788888888887644433
No 358
>PRK05269 transaldolase B; Provisional
Probab=27.35 E-value=90 Score=30.98 Aligned_cols=44 Identities=27% Similarity=0.378 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCeecCC--CCC-----------------Cc--hHHHHHHHHHHCCCCCceeee
Q 020319 248 LCKQAVSQARAGADVVSPS--DMM-----------------DG--RVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 248 Lak~Als~A~AGADiVAPS--DMM-----------------DG--RV~aIR~aLD~~Gf~~v~IMS 292 (327)
-..||+.-|+|||++|+|= -|. || .|..|.+.++..|| ++-||+
T Consensus 160 s~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~-~t~im~ 224 (318)
T PRK05269 160 SFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGY-KTVVMG 224 (318)
T ss_pred CHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCC-CceEEe
Confidence 3459999999999999992 111 22 26778888888888 567886
No 359
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=27.25 E-value=1.1e+02 Score=27.66 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=32.6
Q ss_pred HHHHcCCCeEEEeecCCCCCCCcccccCcCCC--CcHHHHHHHHHHHCCC--eeEEe
Q 020319 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDN--GLVPRTIWLLKDRYPD--LVIYT 217 (327)
Q Consensus 165 ~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~--glV~rAIr~iK~~fPd--l~Vit 217 (327)
.+.+.||++|++ + ||++=+.-+..+ ..+.+.++.+|+.|+. ++|..
T Consensus 35 ~Lk~~Gik~li~-----D--kDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvS 84 (168)
T PF09419_consen 35 HLKKKGIKALIF-----D--KDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVS 84 (168)
T ss_pred hhhhcCceEEEE-----c--CCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 588999999876 1 565544433322 5688899999999986 76665
No 360
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=27.17 E-value=1.2e+02 Score=30.94 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC--CeeEEee-----ecccCCCCCCcc
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTD-----VALDPYSSDGHD 230 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP--dl~VitD-----VcLc~YTshGHc 230 (327)
.+++.|++..+.| ..+|||+-. . |-.|+.+..|.+.-- +.-|+.| +|+.-|-.
T Consensus 204 ~f~~~v~~~l~~G--G~vlipafa-~-------------graQEll~~L~~~~~~~~~pi~~d~~~a~~~~~~~~~---- 263 (427)
T COG1236 204 RFIESVKAALERG--GTVLIPAFA-L-------------GRAQELLLILRELGFAGDYPIYVDGPIARVALAYAKY---- 263 (427)
T ss_pred HHHHHHHHHHhCC--CEEEEeccc-c-------------cHHHHHHHHHHHHhccCCCCeEeccHHHHHHHHHHHh----
Confidence 4778888899998 566888622 1 678888888876542 3444443 22222211
Q ss_pred eeecCCCccccHHHHHHHH-----------HHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeeehhh
Q 020319 231 GIVREDGVIMNDETVHQLC-----------KQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~~La-----------k~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
.+.++++.-.+... .+.....+.++.|++.++|.+ |++..+=+.+...--..+.+..|.+
T Consensus 264 -----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~ 335 (427)
T COG1236 264 -----PIGLDLPDLLKVAESRFRFVESRRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQA 335 (427)
T ss_pred -----chhccChHHHHHHHhhcccccchhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEEccccc
Confidence 12233333333322 267788999999999999998 4555555555444446777777764
No 361
>COG3868 Uncharacterized conserved protein [Function unknown]
Probab=27.15 E-value=1.8e+02 Score=29.34 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
+.++.++.++|++.+.++.+ .. -+....+|-+ -....|+.+++.+||.-.+. ..|-=
T Consensus 92 ~~~~aeL~akG~~g~~ldtl-gS--~e~~apdA~~---~~~~~~~~l~~~wp~e~lid-----------------~Rgf~ 148 (306)
T COG3868 92 LAKRAELKAKGYKGLCLDTL-GS--LELFAPDAAD---APKSLIRQLYANWPDESLID-----------------NRGFE 148 (306)
T ss_pred HHHHHHHHhcCeeEEEEecc-ch--hhhhchhhHh---hHHHHHhhhhcCCCcceeee-----------------ccccc
Confidence 34448999999999999986 32 3333333333 56778999999999865442 22444
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCC------CCchHHHHHHHHHHCCC
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSPSDM------MDGRVGAIRAALDAEGF 285 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAPSDM------MDGRV~aIR~aLD~~Gf 285 (327)
-++.-.++|.+....-...|+|-++|+-- -+|.++.+| .||.+++
T Consensus 149 ~~~~l~~ll~~~l~~~~~~g~d~~~~d~~ev~~~D~~~ll~~~~-~l~~~~~ 199 (306)
T COG3868 149 WLPYLPELLGKVLKLGLVKGFDAVAPDNREVYDADRAGLLAILD-RLDSQYR 199 (306)
T ss_pred cchhhHHHHHHHhhhhhhcchhccCCchhhhhhhhhHHHHHHHH-hhhhccC
Confidence 56777888999999999999999999621 345555554 4555553
No 362
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=27.10 E-value=1e+02 Score=30.65 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCeEEEeecCCC-CCCCcccccCcCCCCcH---HHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPD-ALKSPTGDEAYNDNGLV---PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~-~~KD~~Gs~A~n~~glV---~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~ 235 (327)
.+.++.+.+.|++.|-+|--+.+ ..+...+ .+.+..+ .++|+.+|+.--+ |.. + |+
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~---~s~~~~l~~~~~~v~~a~~~G~~--v~~--~-~e------------ 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLK---KTREEVLERMVEAVEYAKDHGLY--VSF--S-AE------------ 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHCCCe--EEE--E-ec------------
Confidence 55688888999999998864333 1122222 1223333 3455555554322 211 1 12
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHH
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAAL 280 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG--------RV~aIR~aL 280 (327)
|+.--+.+-+..+++ ...++|||.|.-.|++=. .|.++|+.+
T Consensus 138 d~~r~~~~~l~~~~~---~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 138 DASRTDLDFLIEFAK---AAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV 187 (378)
T ss_pred cCCCCCHHHHHHHHH---HHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 222233444444444 446799999999998731 355666654
No 363
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.08 E-value=71 Score=28.66 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=63.8
Q ss_pred CCCChhhHhhhccCCCCCCCceeeEEEeeCC----------CCcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEe-
Q 020319 109 NRKSPAMRASFQETNLSPANFVYPLFIHEGE----------EDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLF- 177 (327)
Q Consensus 109 lR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~----------~~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLF- 177 (327)
.|....+++++++.-...-+ .++|.+..+ +..-|+|+-|-|+ ..+.+.++.+.++|+..+++.
T Consensus 26 d~gakvia~~l~d~GfeVi~--~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~----~l~~~lve~lre~G~~~i~v~~ 99 (143)
T COG2185 26 DRGAKVIARALADAGFEVIN--LGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHL----TLVPGLVEALREAGVEDILVVV 99 (143)
T ss_pred ccchHHHHHHHHhCCceEEe--cCCcCCHHHHHHHHHhcCCCEEEEEeccchHH----HHHHHHHHHHHHhCCcceEEee
Confidence 46677888888885433221 244544322 1234566666554 236677778999999999954
Q ss_pred -ecCCCC----CCCcccccCcCCCCcHHHHHHHHHHHCCC
Q 020319 178 -PKVPDA----LKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (327)
Q Consensus 178 -gvi~~~----~KD~~Gs~A~n~~glV~rAIr~iK~~fPd 212 (327)
|+||+. +|+-.-.+-|.|.-.+..++..+++..+.
T Consensus 100 GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 100 GGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred cCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence 567775 34334455688999999999999887643
No 364
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=27.08 E-value=4.1e+02 Score=27.10 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=75.2
Q ss_pred eeEEEeeCCCCcccCCCCCceEecchhhHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccccCcCCCCcHHHHHHHHH
Q 020319 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLK 207 (327)
Q Consensus 131 ~PlFV~eg~~~~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlL---Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK 207 (327)
-|+||.-.++. |.+| .+.+++++....++|+. ||...+ -++|+.|-
T Consensus 97 ~PVFvDid~~T-----------~nid---~~~ie~aIt~~tKAIipVhl~G~~~d-----------------m~~i~~la 145 (374)
T COG0399 97 KPVFVDIDPDT-----------LNID---PDLIEAAITPRTKAIIPVHLAGQPCD-----------------MDAIMALA 145 (374)
T ss_pred eEEEEecCCcc-----------cCCC---HHHHHHHcccCCeEEEEehhccCCCC-----------------HHHHHHHH
Confidence 48998743321 1244 56677777777888764 665221 35888888
Q ss_pred HHCCCeeEEeeec---ccCCC-----CCCcceeec----------CCC-ccccHHHHHHHHHHHHHHHHcC-------CC
Q 020319 208 DRYPDLVIYTDVA---LDPYS-----SDGHDGIVR----------EDG-VIMNDETVHQLCKQAVSQARAG-------AD 261 (327)
Q Consensus 208 ~~fPdl~VitDVc---Lc~YT-----shGHcGIl~----------~~G-~IdND~Tv~~Lak~Als~A~AG-------AD 261 (327)
+++ +|.||-|-| =+.|- +-||+|++. |+| .+-||+.+...++.--.|.+.. ..
T Consensus 146 ~~~-~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~ 224 (374)
T COG0399 146 KRH-GLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHE 224 (374)
T ss_pred HHc-CCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceee
Confidence 886 799999988 34443 668888873 334 5679988888888888887764 33
Q ss_pred eecCCCCCCchHHHHH
Q 020319 262 VVSPSDMMDGRVGAIR 277 (327)
Q Consensus 262 iVAPSDMMDGRV~aIR 277 (327)
.++=..=|+.-=.||.
T Consensus 225 ~~G~N~rm~~iqAAig 240 (374)
T COG0399 225 ELGYNYRLTEIQAAIG 240 (374)
T ss_pred ecccccCHHHHHHHHH
Confidence 3555555555444443
No 365
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=27.03 E-value=4e+02 Score=26.05 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=34.2
Q ss_pred CCCceEecchhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEE
Q 020319 147 MPGCYRLGWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~-~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi 216 (327)
+|....++.+ .++++.+ +.++| +.++|.. ++ ..+...|.+.+....|++.--+..++
T Consensus 3 ~p~~i~~G~g--~l~~l~~~~~~~g-~r~lvVt--~~--------~~~~~~g~~~~v~~~L~~~g~~~~~~ 60 (357)
T cd08181 3 MPTKVYFGEN--CVEKHGEELAALG-KRALIVT--GK--------SSAKKNGSLDDVTKALEELGIEYEIF 60 (357)
T ss_pred CCCeEEECCC--HHHHHHHHHHHcC-CEEEEEe--CC--------chHhhcCcHHHHHHHHHHcCCeEEEe
Confidence 5777788863 5666654 55678 6665532 11 12344588888888888764344333
No 366
>KOG0133 consensus Deoxyribodipyrimidine photolyase/cryptochrome [Replication, recombination and repair; Signal transduction mechanisms]
Probab=26.99 E-value=65 Score=34.44 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=47.9
Q ss_pred CCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCCCcccCCCCCceEecchhhHHHHHH-HHHHcCCCeEEEeec
Q 020319 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVA-KARDVGVNSVVLFPK 179 (327)
Q Consensus 104 ~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~~~~I~SMPGv~r~sid~~l~~ev~-~~~~lGI~sVlLFgv 179 (327)
|+.-|+--||++-+ .+--++.++|+||.+.+.... +++|..|+..=.+-++.++ .|.++|++-+++=|.
T Consensus 12 r~~lR~~dnpal~~-----a~~~~~~~~~v~i~d~~~~~~--~~~g~~~~~~l~qsL~~ld~sl~~l~~~L~v~~~~ 81 (531)
T KOG0133|consen 12 RKGLRLHDNPALLA-----AAAGKEPVRPVFILDPEEAGS--SNVGRNRWRFLLQSLEDLDQSLRELNSRLFVFRGH 81 (531)
T ss_pred ccCcccccChhhHH-----HhccCCCceeEEEeCHhHhhc--cccchhHHHHHHHHHHHHHHHHHHhCCceEEEeCC
Confidence 66778888888742 233455999999998764222 8999998754334455555 579999987776554
No 367
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=26.91 E-value=36 Score=29.35 Aligned_cols=45 Identities=18% Similarity=0.453 Sum_probs=35.8
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeeehhhhhhccccchhH
Q 020319 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFR 306 (327)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYSAKyASsfYGPFR 306 (327)
+|=|..+..|.+|.|-+.|.++|| ...-.+.-+-..|..||.-++
T Consensus 8 lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~ 54 (134)
T PRK14540 8 ALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHK 54 (134)
T ss_pred EECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhC
Confidence 466777788999999999999999 455556777888888886543
No 368
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=26.86 E-value=2.4e+02 Score=33.22 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=77.3
Q ss_pred hHHHHHH-HHHHcCCCeEEE--eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC---------CeeEEeeecccCCC
Q 020319 158 GLVQEVA-KARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP---------DLVIYTDVALDPYS 225 (327)
Q Consensus 158 ~l~~ev~-~~~~lGI~sVlL--Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP---------dl~VitDVcLc~YT 225 (327)
++++++. .-++.|-.-|.- |+-....+++ .|-+ ..-.-+..+|+++.|+... ...|..+ +.||+
T Consensus 65 e~I~~IH~~Yl~AGADII~TNTF~a~~~~L~~-ygl~-~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGS--IGP~g 140 (1229)
T PRK09490 65 DVIEAIHRAYLEAGADIIETNTFNATTIAQAD-YGME-SLVYELNFAAARLAREAADEWTAKTPDKPRFVAGV--LGPTN 140 (1229)
T ss_pred HHHHHHHHHHHHHhCceeecCCCCCCHHHHhh-CChH-HHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEe--cCCCC
Confidence 4666676 467888663222 6542222222 1211 0012455667777765431 3667776 45777
Q ss_pred CCCcce--eec-CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-----hHHHHHHHHHHCCCCCceee
Q 020319 226 SDGHDG--IVR-EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-----RVGAIRAALDAEGFQHVSIM 291 (327)
Q Consensus 226 shGHcG--Il~-~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG-----RV~aIR~aLD~~Gf~~v~IM 291 (327)
.....+ +-+ .-+.+.-|+-.+...+|+-.++++|+|++.---|.|- =+.++|+.+++.|- +++||
T Consensus 141 ~~~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~-~lPv~ 213 (1229)
T PRK09490 141 RTASISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGV-RLPVM 213 (1229)
T ss_pred cccccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCC-CCeEE
Confidence 544321 111 0134677888999999999999999999999999993 45556666655554 45554
No 369
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=26.82 E-value=2.4e+02 Score=30.86 Aligned_cols=76 Identities=17% Similarity=0.318 Sum_probs=52.6
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcH--------HHHHHHHHHHC--CCeeEEeeec
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV--------PRTIWLLKDRY--PDLVIYTDVA 220 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV--------~rAIr~iK~~f--Pdl~VitDVc 220 (327)
+-++-.+...+.+..++++||++|=|-|+ .+. --.+|-.|++-|+. +...+.+-++. =.|.||-|+-
T Consensus 159 ~~~~~~e~a~~llpYl~elG~T~IELMPv-~e~--p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V 235 (628)
T COG0296 159 RFLGYFELAIELLPYLKELGITHIELMPV-AEH--PGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWV 235 (628)
T ss_pred CCcCHHHHHHHHhHHHHHhCCCEEEEccc-ccC--CCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 34465555666677899999999999996 333 33577777776653 23333333322 2799999999
Q ss_pred ccCCCCCCc
Q 020319 221 LDPYSSDGH 229 (327)
Q Consensus 221 Lc~YTshGH 229 (327)
--.|...||
T Consensus 236 ~~HF~~d~~ 244 (628)
T COG0296 236 PNHFPPDGN 244 (628)
T ss_pred CCcCCCCcc
Confidence 888888887
No 370
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=26.76 E-value=80 Score=30.42 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=51.2
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcce
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcG 231 (327)
|.+.+ .+++.++++.+.|+..|-| +|..|.. +|. -+-+-++.||+++|++ +..-|+|+-
T Consensus 151 ~~~~~-~~~~~~~~~~~~G~d~i~l--------~DT~G~~--~P~-~v~~lv~~l~~~~~~~---------~i~~H~Hn~ 209 (287)
T PRK05692 151 EVPPE-AVADVAERLFALGCYEISL--------GDTIGVG--TPG-QVRAVLEAVLAEFPAE---------RLAGHFHDT 209 (287)
T ss_pred CCCHH-HHHHHHHHHHHcCCcEEEe--------ccccCcc--CHH-HHHHHHHHHHHhCCCC---------eEEEEecCC
Confidence 45664 6888888999999886543 4445543 333 2556788999998864 234477763
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
. |. . ..-++.-.+||||+|--|
T Consensus 210 ~----Gl-----a----~AN~laA~~aG~~~id~s 231 (287)
T PRK05692 210 Y----GQ-----A----LANIYASLEEGITVFDAS 231 (287)
T ss_pred C----Cc-----H----HHHHHHHHHhCCCEEEEE
Confidence 2 20 0 113466679999998433
No 371
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=26.76 E-value=59 Score=32.97 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 200 PRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 200 ~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
.|++...|+.||++++|.-||=|+-|.
T Consensus 80 arqL~QaK~~FPNvyLiVGvc~De~Th 106 (348)
T KOG2804|consen 80 ARQLEQAKKLFPNVYLIVGVCSDELTH 106 (348)
T ss_pred HHHHHHHHHhCCCeEEEEeecCchhhh
Confidence 478999999999999999999999763
No 372
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.53 E-value=2e+02 Score=27.55 Aligned_cols=65 Identities=25% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCcc
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~I 239 (327)
++++.++.+.|..-|+|=+.-+ .-+.++++.+|+. |++.|.+ ..|
T Consensus 191 ~eea~~A~~~gaD~I~ld~~~~---------------e~l~~~v~~i~~~-~~i~i~a-----------------sGG-- 235 (269)
T cd01568 191 LEEAEEALEAGADIIMLDNMSP---------------EELKEAVKLLKGL-PRVLLEA-----------------SGG-- 235 (269)
T ss_pred HHHHHHHHHcCCCEEEECCCCH---------------HHHHHHHHHhccC-CCeEEEE-----------------ECC--
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 240 MNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 240 dND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
-|-++++ .++++|||.|+-|
T Consensus 236 It~~ni~-------~~a~~Gad~Isvg 255 (269)
T cd01568 236 ITLENIR-------AYAETGVDVISTG 255 (269)
T ss_pred CCHHHHH-------HHHHcCCCEEEEc
No 373
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=26.48 E-value=5.9e+02 Score=24.53 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCC-eeEEeeecccCCCCCCcceeecCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVRED 236 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPd-l~VitDVcLc~YTshGHcGIl~~~ 236 (327)
+|.+.+..+.++||+.|++..=-++. .......+-..-..--..|+.||+.+++ ..|.+ +. .-.||.
T Consensus 75 ~l~~~L~~~~~~Gi~niLal~GD~p~-~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igv--a~---~Pe~Hp------ 142 (281)
T TIGR00677 75 MIDDALERAYSNGIQNILALRGDPPH-IGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGV--AG---YPEGHP------ 142 (281)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEE--EE---CCCCCC------
Confidence 47777888899999999887532221 1111111111111245566777776553 32211 11 111222
Q ss_pred CccccHHH-HHHHHHHHHHHHHcCCCeecCCCCCCchH-HHHHHHHHHCCCCCceee
Q 020319 237 GVIMNDET-VHQLCKQAVSQARAGADVVSPSDMMDGRV-GAIRAALDAEGFQHVSIM 291 (327)
Q Consensus 237 G~IdND~T-v~~Lak~Als~A~AGADiVAPSDMMDGRV-~aIR~aLD~~Gf~~v~IM 291 (327)
.+.|.+. ++.|.+ -.+||||.+=--=..|-.. ....+.+.++|. +++|+
T Consensus 143 -~~~~~~~d~~~L~~----Ki~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi-~~PIi 193 (281)
T TIGR00677 143 -EAESVELDLKYLKE----KVDAGADFIITQLFYDVDNFLKFVNDCRAIGI-DCPIV 193 (281)
T ss_pred -CCCCHHHHHHHHHH----HHHcCCCEeeccceecHHHHHHHHHHHHHcCC-CCCEE
Confidence 2233332 555543 2349999887777778665 677777888886 45543
No 374
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.47 E-value=2e+02 Score=29.03 Aligned_cols=79 Identities=14% Similarity=-0.056 Sum_probs=48.5
Q ss_pred CCCCcccCCCCCCCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCCCcccCCCCCceEecc-hhhHHHHHHHHHHcC
Q 020319 92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGW-RHGLVQEVAKARDVG 170 (327)
Q Consensus 92 ~g~p~~~~~~~~~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~~~~I~SMPGv~r~si-d~~l~~ev~~~~~lG 170 (327)
.|-.++-++ +|=.|+.=|++|-...+.. .....-|+||||.+...-.. |-.|+.. -+.|.+.-++|.++|
T Consensus 21 ~~~~vL~WF---RrDLRl~DN~aL~~A~~~a-~~~~~~vl~vyi~dp~~~~~-----~~~r~~Fl~esL~~L~~~L~~~g 91 (454)
T TIGR00591 21 SSGVVVYWM---SRDQRVQDNWALIAAQTLA-LKKKLPLHVCFCLVDFFLAA-----TRRHYFFMLGGLDEVANECERLI 91 (454)
T ss_pred CCCeEEEEe---cCchhccCCHHHHHHHHHH-HHcCCCEEEEEEeCCCcccc-----cHHHHHHHHHHHHHHHHHHHHcC
Confidence 343466666 6788899999997665421 11123599999998643221 4333322 123334444788999
Q ss_pred CCeEEEeec
Q 020319 171 VNSVVLFPK 179 (327)
Q Consensus 171 I~sVlLFgv 179 (327)
++-+++.|.
T Consensus 92 ~~L~v~~g~ 100 (454)
T TIGR00591 92 IPFHLLDGP 100 (454)
T ss_pred CceEEeecC
Confidence 999999874
No 375
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.43 E-value=1.4e+02 Score=20.88 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCee--cCCCC-----------CCchHHHHHHHHHHCCCC
Q 020319 246 HQLCKQAVSQARAGADVV--SPSDM-----------MDGRVGAIRAALDAEGFQ 286 (327)
Q Consensus 246 ~~Lak~Als~A~AGADiV--APSDM-----------MDGRV~aIR~aLD~~Gf~ 286 (327)
-.|++++-..+++|+.|+ -.+.. +|+ ...+++.|.++||+
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-~~~~~~~L~~~G~~ 63 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-IEKAIEVLQERGVE 63 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-HHHHHHHHHHCCce
Confidence 357778888899999884 22221 344 78999999999993
No 376
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.86 E-value=2.3e+02 Score=26.76 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCc-----------ccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSP-----------TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~-----------~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTs 226 (327)
++.+.++.+.+.|+..|.++..+..-..|. .|-....-.-...+.++.||+.+ ++-||+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~--------- 239 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-DIPIIG--------- 239 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-CCCEEE---------
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCc
Q 020319 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288 (327)
Q Consensus 227 hGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v 288 (327)
.|.|.+-+..+.+.+.-....+-|=-.++--+.+.--...+.+.|+++||+++
T Consensus 240 ---------~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~~~i 292 (301)
T PRK07259 240 ---------MGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGIKSI 292 (301)
T ss_pred ---------ECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCCCCH
No 377
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.53 E-value=4.4e+02 Score=25.30 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP 211 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP 211 (327)
+.+.++.+.+.|+..|.+.+.... ..+. .+.--..++.||+..+
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~--------~~~~-~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRA--------QGYS-GEANWDIIARVKQAVR 192 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEccccc--------ccCC-CchhHHHHHHHHHcCC
Confidence 567777888999999999885221 1121 1234578999999875
No 378
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=25.47 E-value=2.7e+02 Score=29.64 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=59.6
Q ss_pred cchhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccccCcCCCC------------cHHHHHHHHHHHCCCeeEEeeec
Q 020319 154 GWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG------------LVPRTIWLLKDRYPDLVIYTDVA 220 (327)
Q Consensus 154 sid~~l~~ev-~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~g------------lV~rAIr~iK~~fPdl~VitDVc 220 (327)
+.. ++.+.+ ..+.+|||++|-|-|+-.... .++-.|++.+ =+.+-|.++.++ .|-||-||-
T Consensus 154 ~~~-~i~~~l~dyl~~LGvt~i~L~Pi~e~~~---~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~--Gi~VilD~V 227 (613)
T TIGR01515 154 SYR-ELADQLIPYVKELGFTHIELLPVAEHPF---DGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQA--GIGVILDWV 227 (613)
T ss_pred CHH-HHHHHHHHHHHHcCCCEEEECCcccCCC---CCCCCCCcccCcccccccCCHHHHHHHHHHHHHC--CCEEEEEec
Confidence 343 577885 889999999999998632111 1223343332 133444444444 799999998
Q ss_pred ccCCCCCCcc-----e--eec----------CCC----ccccHHHHHHHHHHHHHHHHc-CCCe
Q 020319 221 LDPYSSDGHD-----G--IVR----------EDG----VIMNDETVHQLCKQAVSQARA-GADV 262 (327)
Q Consensus 221 Lc~YTshGHc-----G--Il~----------~~G----~IdND~Tv~~Lak~Als~A~A-GADi 262 (327)
+-.....++. | +.. .-| ...|.+..+.|...+.-..+- |.|=
T Consensus 228 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG 291 (613)
T TIGR01515 228 PGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDG 291 (613)
T ss_pred ccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcE
Confidence 7544322211 0 000 001 125678888888888877764 6653
No 379
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=25.33 E-value=4.2e+02 Score=25.77 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=65.5
Q ss_pred ccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeeccc
Q 020319 143 PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222 (327)
Q Consensus 143 ~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc 222 (327)
+|+-|....+ +-. .|.+.+..+.++||+.|+...=-++ ++......| -...|+.||+. .++.|. |+..
T Consensus 85 ~i~Hltcr~~-n~~-~l~~~L~~~~~~GI~niLaLrGD~p--~~~~~~~~~-----a~dLv~li~~~-~~~~i~--va~y 152 (296)
T PRK09432 85 AAPHLTCIDA-TPD-ELRTIAKDYWNNGIRHIVALRGDLP--PGSGKPEMY-----ASDLVTLLKSV-ADFDIS--VAAY 152 (296)
T ss_pred eeeecccCCC-CHH-HHHHHHHHHHHCCCCEEEEeCCCCC--CCCCCCCcC-----HHHHHHHHHHh-CCCccc--eeeC
Confidence 3444444433 332 5788888999999999999753222 322111111 23566677754 443332 2332
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCC
Q 020319 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGF 285 (327)
Q Consensus 223 ~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD~~Gf 285 (327)
| -||...- +-+..++.|- .-.+||||.+=--=..| ..+....+.+.+.|.
T Consensus 153 P---eghp~~~------~~~~dl~~Lk----~K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi 203 (296)
T PRK09432 153 P---EVHPEAK------SAQADLINLK----RKVDAGANRAITQFFFDVESYLRFRDRCVSAGI 203 (296)
T ss_pred C---CCCCCCC------CHHHHHHHHH----HHHHcCCCeeecccccchHHHHHHHHHHHHcCC
Confidence 2 5554422 1234444433 34579998766665666 345577788888885
No 380
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=25.00 E-value=51 Score=29.94 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCC
Q 020319 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (327)
Q Consensus 157 ~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshG 228 (327)
..|.+++.++++.|+.-|+.=|- .|-+ -....++-.||+.+|+|-++ |+=||..+|
T Consensus 29 ~~L~~~i~~lie~G~~~fi~Gga--------lG~D-----~waae~vl~LK~~yp~ikL~---~v~Pf~~q~ 84 (177)
T PF06908_consen 29 KALKKQIIELIEEGVRWFITGGA--------LGVD-----LWAAEVVLELKKEYPEIKLA---LVLPFENQG 84 (177)
T ss_dssp HHHHHHHHHHHTTT--EEEE-----------TTHH-----HHHHHHHHTTTTT-TT-EEE---EEESSB-TT
T ss_pred HHHHHHHHHHHHCCCCEEEECCc--------ccHH-----HHHHHHHHHHHhhhhheEEE---EEEcccchh
Confidence 35788899999999998766332 3433 34677899999999997774 566886654
No 381
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=24.93 E-value=3.8e+02 Score=25.11 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
++.+.++-+.+.|.. |-+ ..+| |.+.|--...|+.+++..+ |.+||-- -|
T Consensus 137 ~i~~a~~~~~~agad----fIK------TsTG---~~~~gat~~~v~~m~~~~~----------------~~~~IKa-sG 186 (221)
T PRK00507 137 EKVKACEIAKEAGAD----FVK------TSTG---FSTGGATVEDVKLMRETVG----------------PRVGVKA-SG 186 (221)
T ss_pred HHHHHHHHHHHhCCC----EEE------cCCC---CCCCCCCHHHHHHHHHHhC----------------CCceEEe-eC
Confidence 466667778899988 432 2234 3356788899999998753 6788874 46
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSD 267 (327)
-|.+ .++|+.+-+|||+-|.-|.
T Consensus 187 GIrt-------~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 187 GIRT-------LEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CcCC-------HHHHHHHHHcCcceEccCc
Confidence 6765 3488889999999998773
No 382
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=24.88 E-value=2.1e+02 Score=27.00 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHHHHHHHCCC--eeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHH-HcCCCeec-CCCCCC-------
Q 020319 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA-RAGADVVS-PSDMMD------- 270 (327)
Q Consensus 202 AIr~iK~~fPd--l~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A-~AGADiVA-PSDMMD------- 270 (327)
..+.|++.+|+ ++-.+|-.--|| |.=.-++=.+.+.+.+-.+. ++|||+|. |.--..
T Consensus 13 v~~~l~~~~p~~~~iy~~D~~~~PY------------G~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~~~~~l 80 (251)
T TIGR00067 13 VLKEIRKQLPKEHYIYVGDTKRFPY------------GEKSPEFILEYVLELLTFLKERHNIKLLVVACNTASALALEDL 80 (251)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHH
Confidence 56888899984 888999999999 33344555666667777777 88998764 222111
Q ss_pred ---------chH-HHHHHHHHHCCCCCceeeehhhhhhccccchh
Q 020319 271 ---------GRV-GAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (327)
Q Consensus 271 ---------GRV-~aIR~aLD~~Gf~~v~IMSYSAKyASsfYGPF 305 (327)
|.| -+++.+....+-.+|+||+=.+-..|.+|--.
T Consensus 81 ~~~~~iPii~iie~~v~~a~~~~~~~~IgvLAT~~Ti~s~~y~~~ 125 (251)
T TIGR00067 81 QRNFDFPVVGVIEPAIKAAIRLTANGRVLVIATNATIKSNAYHEA 125 (251)
T ss_pred HHHCCCCEEeecHHHHHHHHHhCCCCeEEEEeCHHHHhhhHHHHH
Confidence 222 34444444333358999998888889888543
No 383
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=24.84 E-value=3.8e+02 Score=21.98 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=32.2
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec
Q 020319 163 VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (327)
Q Consensus 163 v~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc 220 (327)
+..+.+.|...|.|-+.-+. . -....+.++.+|+.+|++.|+..+-
T Consensus 77 a~~~~~~g~d~v~l~~~~~~-~-----------~~~~~~~~~~i~~~~~~~~v~~~~~ 122 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGY-L-----------AREDLELIRELREAVPDVKVVVKLS 122 (200)
T ss_pred HHHHHHcCCCEEEEeccCCc-H-----------HHHHHHHHHHHHHhcCCceEEEEEC
Confidence 56788889988877543111 0 2346778899999998888888764
No 384
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=24.76 E-value=1.8e+02 Score=24.77 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=38.7
Q ss_pred HHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeec
Q 020319 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (327)
Q Consensus 165 ~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~ 234 (327)
.|.+.|++.++|-|+-.+ -....-|+.+.+.-| ++.|+.|-|- .++...|...+.
T Consensus 93 ~L~~~gi~~viv~G~~td-------------~CV~~Ta~~a~~~g~-~v~vi~Da~~-s~~~~~~~~~~~ 147 (155)
T cd01014 93 WLREAGIDHLVICGAMTE-------------MCVDTTVRSAFDLGY-DVTVVADACA-TFDLPDHGGVLS 147 (155)
T ss_pred HHHHCCCCEEEEEeeccc-------------hhHHHHHHHHHHCCC-cEEEeccccc-CCCcccCCceeC
Confidence 356899999999997221 245555655555555 8999999884 567777877764
No 385
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=24.74 E-value=4.4e+02 Score=25.79 Aligned_cols=80 Identities=10% Similarity=0.216 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe--eec----ccC-CCCCCcc
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--DVA----LDP-YSSDGHD 230 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit--DVc----Lc~-YTshGHc 230 (327)
+.++.++.+.+.|+..+.+.|.... ..|.....=-..|+.||+.. ++-||. ||. ... ....|=|
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~--------~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKE--------DGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCc--------cCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 3667777888999999999886321 12221111136899999876 333433 331 000 1124556
Q ss_pred eeecCCCccccHHHHH
Q 020319 231 GIVREDGVIMNDETVH 246 (327)
Q Consensus 231 GIl~~~G~IdND~Tv~ 246 (327)
|+.-..|-+-|..-..
T Consensus 220 gVmiGRg~l~nP~lf~ 235 (312)
T PRK10550 220 AVMIGRGALNIPNLSR 235 (312)
T ss_pred EEEEcHHhHhCcHHHH
Confidence 6664445566654443
No 386
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=24.59 E-value=51 Score=33.67 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=34.4
Q ss_pred EeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCC-C---ccccHHHHHHHHHH
Q 020319 176 LFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED-G---VIMNDETVHQLCKQ 251 (327)
Q Consensus 176 LFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~-G---~IdND~Tv~~Lak~ 251 (327)
..|+ |++.|+...--+.. +..++. |+.|||-=++.++ | -++||+
T Consensus 2 ~IGv-pkEik~~E~RValt-----P~~V~~------------------l~~~GheVlVe~gAG~gsg~~D~~-------- 49 (371)
T COG0686 2 RIGV-PKEIKNNENRVALT-----PASVRE------------------LVNHGHEVLVETGAGAGSGFDDDD-------- 49 (371)
T ss_pred cccc-cccccCCcceeccC-----hHhHHH------------------HHhCCcEEEEecCCcCCCCCChHH--------
Confidence 3453 66778765555444 334443 6778999998431 1 466664
Q ss_pred HHHHHHcCCCeec
Q 020319 252 AVSQARAGADVVS 264 (327)
Q Consensus 252 Als~A~AGADiVA 264 (327)
|.+|||+||+
T Consensus 50 ---Y~~aGA~Iv~ 59 (371)
T COG0686 50 ---YEAAGAKIVA 59 (371)
T ss_pred ---HHHcCCEEec
Confidence 7789999994
No 387
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=24.58 E-value=1.9e+02 Score=26.46 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCC
Q 020319 243 ETVHQLCKQAVSQARAGADVVSPSDMM 269 (327)
Q Consensus 243 ~Tv~~Lak~Als~A~AGADiVAPSDMM 269 (327)
.|++.|-++--.+-+.|-.+|.-++||
T Consensus 198 ~t~~aL~~ii~~lk~~Gy~fvtl~el~ 224 (224)
T TIGR02884 198 DNAEALDKIIKDLKEQGYTFKSLDDLM 224 (224)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEhHHcC
Confidence 366777766667777888888887777
No 388
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=24.54 E-value=90 Score=29.60 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHcCCCeecC
Q 020319 244 TVHQLCKQAVSQARAGADVVSP 265 (327)
Q Consensus 244 Tv~~Lak~Als~A~AGADiVAP 265 (327)
+.+...+.|..+.++|||||==
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDI 42 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDV 42 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE
Confidence 3466778899999999999843
No 389
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=24.51 E-value=2.2e+02 Score=26.02 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccC
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~ 223 (327)
+...++.+.+.|.++|.+.-.+.. +.+++.|.++||++-|+|- |+|+
T Consensus 140 l~~ai~~L~~~G~~~I~~~~ll~~-----------------~~gl~~l~~~~p~v~i~~~-~iD~ 186 (209)
T PRK00129 140 AIAAIDLLKKRGAKNIKVLCLVAA-----------------PEGIKALEEAHPDVEIYTA-AIDE 186 (209)
T ss_pred HHHHHHHHHHcCCCEEEEEEEecC-----------------HHHHHHHHHHCCCcEEEEE-eecC
Confidence 778888999999999888765321 4589999999999888882 5554
No 390
>PRK15447 putative protease; Provisional
Probab=24.48 E-value=1.7e+02 Score=28.22 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=59.0
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC-Ccce
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD-GHDG 231 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh-GHcG 231 (327)
++.+ ++.+.++.+.+.|.+-++-.|.|.. ++.. .. .+..+.+.-++.+++.|.-.-.+--. |.-=
T Consensus 45 f~~~-~l~e~v~~~~~~gkkvyva~p~i~~--~~~e----------~~-~l~~~l~~~~~~v~v~d~g~l~~~~e~~~~l 110 (301)
T PRK15447 45 LKVG-DWLELAERLAAAGKEVVLSTLALVE--APSE----------LK-ELRRLVENGEFLVEANDLGAVRLLAERGLPF 110 (301)
T ss_pred CCHH-HHHHHHHHHHHcCCEEEEEeccccc--CHHH----------HH-HHHHHHhcCCCEEEEeCHHHHHHHHhcCCCE
Confidence 5664 6999999999999887776776531 1110 01 11112222234444444432221111 1111
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCC-eecCCCCCCchHHHHHHHHHH
Q 020319 232 IVREDGVIMNDETVHQLCKQAVSQARAGAD-VVSPSDMMDGRVGAIRAALDA 282 (327)
Q Consensus 232 Il~~~G~IdND~Tv~~Lak~Als~A~AGAD-iVAPSDMMDGRV~aIR~aLD~ 282 (327)
+.+-.=.|-|..|++.+. +.|++ ++.|-++=--.|..|++.+.+
T Consensus 111 ~~d~~lni~N~~a~~~l~-------~~G~~rv~ls~ELsl~eI~~i~~~~~~ 155 (301)
T PRK15447 111 VAGPALNCYNAATLALLA-------RLGATRWCMPVELSRDWLANLLAQCPE 155 (301)
T ss_pred EEecccccCCHHHHHHHH-------HcCCcEEEECCcCCHHHHHHHHHhccc
Confidence 111112467888888664 45887 556666666889998877643
No 391
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=24.47 E-value=1.1e+02 Score=30.36 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlL---Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
+|...+ .+++.++.+.+.|+..|-| +|...+ .-+.+.|+.|+++++ .+..-|
T Consensus 136 ~r~~~~-~l~~~~~~~~~~g~~~i~l~DT~G~~~P--------------~~v~~li~~l~~~~~----------~~l~~H 190 (363)
T TIGR02090 136 TRTDID-FLIKVFKRAEEAGADRINIADTVGVLTP--------------QKMEELIKKLKENVK----------LPISVH 190 (363)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCEEEEeCCCCccCH--------------HHHHHHHHHHhcccC----------ceEEEE
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiV 263 (327)
+|+ ++-.=..-++.-.+|||++|
T Consensus 191 ~Hn-------------d~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 191 CHN-------------DFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred ecC-------------CCChHHHHHHHHHHCCCCEE
No 392
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.44 E-value=6.6e+02 Score=25.55 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=29.0
Q ss_pred ccCCCCCceEe-cchhhHHHHHHHHHHcCCCeEEEeec
Q 020319 143 PIGAMPGCYRL-GWRHGLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 143 ~I~SMPGv~r~-sid~~l~~ev~~~~~lGI~sVlLFgv 179 (327)
.|+.+-|-+|. +++ .+++|++.+++.|++.|.|.+.
T Consensus 166 ~ip~~rG~~rsr~~e-~Iv~Ei~~l~~~G~~eI~l~~~ 202 (446)
T PRK14337 166 IVPYTRGRQKSRSSA-AVLDECRALVDRGAREITLLGQ 202 (446)
T ss_pred CcccCCCCCeeCCHH-HHHHHHHHHHHCCCeEEEEEec
Confidence 45566676664 675 6999999999999999999874
No 393
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=24.43 E-value=3.7e+02 Score=26.26 Aligned_cols=88 Identities=23% Similarity=0.250 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCCeEEE-eecCCC--CCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEeeecccCCCCCCcceeec
Q 020319 159 LVQEVAKARDVGVNSVVL-FPKVPD--ALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVR 234 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlL-Fgvi~~--~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~VitDVcLc~YTshGHcGIl~ 234 (327)
+.+-++.+.+.|...|=| +|. |. -.|-..|+.-.+.--++.+.++++|+++| ++-|..=+-+ |
T Consensus 77 ~~~aA~~~~~~g~d~IdiN~GC-P~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~------g------ 143 (312)
T PRK10550 77 LAENAARAVELGSWGVDLNCGC-PSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL------G------ 143 (312)
T ss_pred HHHHHHHHHHcCCCEEEEeCCC-CchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC------C------
Confidence 556666788899998888 464 32 12333444455666788999999999987 5666554443 1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 235 ~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
.-++++++ +.|-...++|+|.|.=+
T Consensus 144 ---~~~~~~~~----~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 144 ---WDSGERKF----EIADAVQQAGATELVVH 168 (312)
T ss_pred ---CCCchHHH----HHHHHHHhcCCCEEEEC
Confidence 11234443 34555678999998765
No 394
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=24.39 E-value=59 Score=28.07 Aligned_cols=72 Identities=29% Similarity=0.419 Sum_probs=46.3
Q ss_pred eeEEEeeCCCC--------cccCCCCCceEec-c--h-------hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccC
Q 020319 131 YPLFIHEGEED--------TPIGAMPGCYRLG-W--R-------HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA 192 (327)
Q Consensus 131 ~PlFV~eg~~~--------~~I~SMPGv~r~s-i--d-------~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A 192 (327)
.||+|+||..+ .+-=++|||+-+. + + ..|..+++.+...|-+-++.|-- + .|.
T Consensus 11 ~pi~ItEG~kKA~al~s~G~~aIalpGV~~~~~~~~~~~~~~~~~~L~p~L~~~~~~gr~v~iaFD~-D--~~~------ 81 (130)
T PF12965_consen 11 IPIWITEGAKKAGALLSQGYPAIALPGVNNGYRWPKDEGDKIGKRRLIPELAKLAKPGREVYIAFDA-D--TKP------ 81 (130)
T ss_pred ccEEEEechHHHHHHHcCCceEEEeCceeccccccccccccccchhcchhHHHhccCCceEEEEecC-C--Ccc------
Confidence 59999999732 2334788887653 1 1 13667777777778777777864 2 222
Q ss_pred cCCCCcHHHHHHHHHHHCCC
Q 020319 193 YNDNGLVPRTIWLLKDRYPD 212 (327)
Q Consensus 193 ~n~~glV~rAIr~iK~~fPd 212 (327)
.-+--|.+|++.+.+.+-+
T Consensus 82 -~Tn~~V~~a~~~l~~~L~~ 100 (130)
T PF12965_consen 82 -KTNKNVRRAIKRLGKLLKE 100 (130)
T ss_pred -chhHHHHHHHHHHHHHHHH
Confidence 1235688888888776644
No 395
>PLN02960 alpha-amylase
Probab=24.05 E-value=7.3e+02 Score=28.55 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=62.0
Q ss_pred hHHHH-HHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCc------------HHHHHHHHHHHCCCeeEEeeecccCC
Q 020319 158 GLVQE-VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPY 224 (327)
Q Consensus 158 ~l~~e-v~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~gl------------V~rAIr~iK~~fPdl~VitDVcLc~Y 224 (327)
++.++ +.-+.++||++|-|-|+.. ..+ .++-.|+..+. +.+-|.++.++ .|-||-||-.-.+
T Consensus 417 ~~~e~~LdYLk~LGvt~IeLmPv~e--~~~-~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~--GI~VILDvV~NH~ 491 (897)
T PLN02960 417 EFTQKVLPHVKKAGYNAIQLIGVQE--HKD-YSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGL--GLLVFLDIVHSYA 491 (897)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccc--CCC-CCCCCCCcccCCCcccccCCHHHHHHHHHHHHHC--CCEEEEEeccccc
Confidence 57655 7889999999999999732 222 33344544433 34444444443 7999999966554
Q ss_pred CCCCcceee--c--------C--C------C----ccccHHHHHHHHHHHHHHHHc-CCC---eecCCCCC
Q 020319 225 SSDGHDGIV--R--------E--D------G----VIMNDETVHQLCKQAVSQARA-GAD---VVSPSDMM 269 (327)
Q Consensus 225 TshGHcGIl--~--------~--~------G----~IdND~Tv~~Lak~Als~A~A-GAD---iVAPSDMM 269 (327)
....+.|+. + . . | ..+|.+....|...+.-..+. |.| +=|=+.|+
T Consensus 492 ~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMl 562 (897)
T PLN02960 492 AADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSML 562 (897)
T ss_pred CCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceee
Confidence 433111110 0 0 0 1 235677778888877777654 444 33445554
No 396
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=23.97 E-value=5.6e+02 Score=25.13 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCeEEEeec
Q 020319 160 VQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgv 179 (327)
.+.++.+.+.|+..|.++|.
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~ 212 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGA 212 (333)
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 57788899999999999985
No 397
>PRK11890 phosphate acetyltransferase; Provisional
Probab=23.90 E-value=2e+02 Score=28.69 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCC--------CcccccCcCCC---CcHHHHHHHHH-----------------
Q 020319 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALK--------SPTGDEAYNDN---GLVPRTIWLLK----------------- 207 (327)
Q Consensus 156 d~~l~~ev~~~~~lGI~sVlLFgvi~~~~K--------D~~Gs~A~n~~---glV~rAIr~iK----------------- 207 (327)
|...++-+.++.+.||-..+|+|. .++-+ |..+-+-.|++ -...+|+.++|
T Consensus 32 D~~vl~Aa~~a~~~gl~~piLvG~-~~~I~~~a~~~g~dl~~~eII~~~~~~~~a~~av~mV~~G~AD~lmkG~i~Tt~~ 110 (312)
T PRK11890 32 DESSLRGAVEAAQLGLITPILVGP-RARIEAVAAECGLDLSGYEIVDAPHSHAAAAKAVELVREGEAEALMKGSLHTDEL 110 (312)
T ss_pred CHHHHHHHHHHHHcCCEEEEEECC-HHHHHHHHHHcCCCcCCCEEECCCChHHHHHHHHHHHHcCCCCEEecCCcccHHH
Confidence 456788888899999888888884 11111 11221112221 12233333333
Q ss_pred -----HH---CCCeeEEeeecccCCCCCCcceee-cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHH
Q 020319 208 -----DR---YPDLVIYTDVALDPYSSDGHDGIV-REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRA 278 (327)
Q Consensus 208 -----~~---fPdl~VitDVcLc~YTshGHcGIl-~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~ 278 (327)
++ .|.--+++-|.+.+.... | +++ --|.-|.-+.|++++++++..-++.
T Consensus 111 lra~l~~~~gl~~~~~lS~v~i~~~p~~-~-~~l~~tD~~vn~~P~~eq~a~I~~~a~~~-------------------- 168 (312)
T PRK11890 111 MSAVVARDTGLRTERRISHVFVMDVPGY-P-KPLIITDAAVNIAPTLEDKADIVQNAIDL-------------------- 168 (312)
T ss_pred HHHHHhHhcCCCCCCeEEEEEEEEecCC-C-cEEEEecCeecCCcCHHHHHHHHHHHHHH--------------------
Confidence 11 244445666666544222 2 333 2467888899999999997765542
Q ss_pred HHHHCCC--CCceeeehhhhh
Q 020319 279 ALDAEGF--QHVSIMSYTAKY 297 (327)
Q Consensus 279 aLD~~Gf--~~v~IMSYSAKy 297 (327)
...-|+ -+|+++|||.|-
T Consensus 169 -a~~lG~~~PkVA~LS~se~~ 188 (312)
T PRK11890 169 -AHALGFDEPRVAILSAVETV 188 (312)
T ss_pred -HHHhCCCCCeEEEEeeecCC
Confidence 123366 488888888664
No 398
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=23.81 E-value=1.1e+02 Score=28.25 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCC
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~Y 224 (327)
...-++.+.++|+++|. ||-|. +|...+..+.....+++.+++--|+ --+-.|-++-|
T Consensus 103 ~~~~l~~a~~~g~~SiA-fPais------tGv~G~p~~~aa~i~~~~v~~~~~~-~~~~~v~~v~~ 160 (179)
T COG2110 103 YRAALRLAKEAGVRSVA-FPAIS------TGVYGFPLEEAARIAVEAVKDFLPE-ASIETVIFVVY 160 (179)
T ss_pred HHHHHHHHHHcCCceee-ccccc------CcccCCCHHHHHHHHHHHHHHhccc-ccccEEEEEec
Confidence 45667788899999986 56554 7999999999999999999998875 22334444444
No 399
>PLN02371 phosphoglucosamine mutase family protein
Probab=23.66 E-value=7.2e+02 Score=26.41 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCc-cccHHHHHHHHHHHHHHHHcCCCeecCC---CCCC
Q 020319 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV-IMNDETVHQLCKQAVSQARAGADVVSPS---DMMD 270 (327)
Q Consensus 199 V~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~-IdND~Tv~~Lak~Als~A~AGADiVAPS---DMMD 270 (327)
+...++.+|+.--|+.|++|=-- =-+|+++++|. |..|..+-.|++.-+.. .-|..||.|. .|+|
T Consensus 315 l~~l~~~v~~~~aDlGia~DgDa------DR~~vvD~~G~~i~gd~l~aLla~~ll~~-~~g~~VV~~v~sS~~l~ 383 (583)
T PLN02371 315 MSATTQAVLANKADLGIIFDTDV------DRSAVVDSSGREINRNRLIALMSAIVLEE-HPGTTIVTDSVTSDGLT 383 (583)
T ss_pred HHHHHHHHHhcCCCEEEEECCCc------cceeEECCCCEEECHHHHHHHHHHHHHHh-CCCCEEEEecccchhHH
Confidence 45566667766678999987433 36789988775 56777888888777663 5688899994 5555
No 400
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=23.39 E-value=98 Score=30.22 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=25.0
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCC
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPD 182 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~ 182 (327)
||+- ..+.+.++++.+.|+..+++||.-|-
T Consensus 100 ry~~-P~i~~~l~~l~~~G~~~iv~lPL~Pq 129 (322)
T TIGR00109 100 RYGE-PFTEEAVKELLKDGVERAVVLPLYPH 129 (322)
T ss_pred ccCC-CCHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 6664 46888899999999999999998663
No 401
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.32 E-value=64 Score=33.58 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCCCCceeeehh
Q 020319 273 VGAIRAALDAEGFQHVSIMSYT 294 (327)
Q Consensus 273 V~aIR~aLD~~Gf~~v~IMSYS 294 (327)
+.-+|++|+.+||.||.+.|-.
T Consensus 90 i~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 90 IELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred HHHHHHHHHHcCCCCCcEEEee
Confidence 5679999999999999999887
No 402
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=23.27 E-value=79 Score=28.80 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHcCCCee
Q 020319 245 VHQLCKQAVSQARAGADVV 263 (327)
Q Consensus 245 v~~Lak~Als~A~AGADiV 263 (327)
.+...+.|..+.++|||||
T Consensus 18 ~~~a~~~a~~~~~~GAdiI 36 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADII 36 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHhcCCEE
Confidence 3455566999999999998
No 403
>PHA03386 P10 fibrous body protein; Provisional
Probab=23.24 E-value=85 Score=26.63 Aligned_cols=35 Identities=34% Similarity=0.762 Sum_probs=18.5
Q ss_pred hhhccC-CCCCCCCCCCCCCCCCC-CcccCCCCCCCCCcCC
Q 020319 72 AVVAGN-IPEAPPVPPKPAAPAGT-PVVPSLPLSRRPRRNR 110 (327)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~~~g~-p~~~~~~~~~R~RRlR 110 (327)
.+..|. .|+ +|.|+.|..+.-. |..+. .+|.||.|
T Consensus 57 ~iLn~d~iPd-~P~p~~p~~~~~~~~~~~~---~~~~rrs~ 93 (94)
T PHA03386 57 SILTGDEVPD-PPDPPLPLLPEPEFELDSD---IPRGRRSR 93 (94)
T ss_pred HhcCcccCCC-CCCCCCCCCcccccccccc---chhccccc
Confidence 456666 777 5666666555422 33322 24555554
No 404
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.11 E-value=5.9e+02 Score=25.03 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=34.9
Q ss_pred CCCceEecchhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCe
Q 020319 147 MPGCYRLGWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDL 213 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~~-~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl 213 (327)
+|..+.++.+ .++++.+ +.++|.+.++|.. ... ....|.+.+....+++..-+.
T Consensus 3 ~p~~i~~G~g--~l~~l~~~l~~~~~~~~livt--~~~---------~~~~~~~~~v~~~L~~~~~~~ 57 (376)
T cd08193 3 TPPRIVFGAG--SLARLGELLAALGAKRVLVVT--DPG---------ILKAGLIDPLLASLEAAGIEV 57 (376)
T ss_pred CCCeEEECcC--HHHHHHHHHHHcCCCeEEEEc--Ccc---------hhhCccHHHHHHHHHHcCCeE
Confidence 5777788864 5666654 5667888888753 111 223577888778888764443
No 405
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.10 E-value=3.3e+02 Score=25.32 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHcCCCeEEE
Q 020319 158 GLVQEVAKARDVGVNSVVL 176 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlL 176 (327)
.+.++++.+.+.|+..+=|
T Consensus 15 ~~~~~~~~l~~~Gad~iel 33 (242)
T cd04724 15 TTLEILKALVEAGADIIEL 33 (242)
T ss_pred HHHHHHHHHHHCCCCEEEE
Confidence 4788899999999988765
No 406
>PRK14706 glycogen branching enzyme; Provisional
Probab=22.99 E-value=2.6e+02 Score=30.21 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=64.3
Q ss_pred ecchhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCc------------HHHHHHHHHHHCCCeeEEeee
Q 020319 153 LGWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDV 219 (327)
Q Consensus 153 ~sid~~l~~ev-~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~gl------------V~rAIr~iK~~fPdl~VitDV 219 (327)
.+.. ++.+++ .-+.++|+++|-|-|+.. . ...++-.|++.+. +.+-|+++.++ .|-||-||
T Consensus 164 ~ty~-~~~~~l~~ylk~lG~t~velmPv~e-~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~--gi~VilD~ 237 (639)
T PRK14706 164 LNYR-ELAHRLGEYVTYMGYTHVELLGVME-H--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGL--GIGVILDW 237 (639)
T ss_pred cCHH-HHHHHHHHHHHHcCCCEEEccchhc-C--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHC--CCEEEEEe
Confidence 4554 577776 569999999999999632 1 1234555554442 33333333333 69999999
Q ss_pred cccCCCCCCcceeec------------CC------C----ccccHHHHHHHHHHHHHHH-HcCCC---eecCCCC
Q 020319 220 ALDPYSSDGHDGIVR------------ED------G----VIMNDETVHQLCKQAVSQA-RAGAD---VVSPSDM 268 (327)
Q Consensus 220 cLc~YTshGHcGIl~------------~~------G----~IdND~Tv~~Lak~Als~A-~AGAD---iVAPSDM 268 (327)
-.-.+...++ |+.. .. | ...|.+..+.|...+.-.. +-|.| +=|-+.|
T Consensus 238 v~nH~~~~~~-~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ 311 (639)
T PRK14706 238 VPGHFPTDES-GLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASM 311 (639)
T ss_pred cccccCcchh-hhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehhe
Confidence 8866433211 1110 00 1 1247788888888887776 46665 3455666
No 407
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=22.95 E-value=41 Score=33.13 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.1
Q ss_pred eecCCCCCCchHHHHHHHHHHCCCC
Q 020319 262 VVSPSDMMDGRVGAIRAALDAEGFQ 286 (327)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf~ 286 (327)
+-+|..+-.|.+.+||++|+++|..
T Consensus 198 ~~~p~p~~~~~~~ai~~AL~~Agl~ 222 (342)
T PRK14691 198 MTSGAEDGDGAYRAMKIALRQAGIT 222 (342)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3447778889999999999999983
No 408
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=22.92 E-value=1.8e+02 Score=29.26 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEE---eeecccCCCCCCcceeec-
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY---TDVALDPYSSDGHDGIVR- 234 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi---tDVcLc~YTshGHcGIl~- 234 (327)
=.+.++...++|++.|.|=.|--+++.|. |. +..-..|++||+..|+..|= -|.+ |-.+.|+
T Consensus 102 P~rvAeaV~~mgLkyVViTsVdRDDL~DG-GA------~hfa~~i~~Ire~~P~t~iEvL~PDF~-------G~~~al~~ 167 (306)
T COG0320 102 PERVAEAVKDMGLKYVVITSVDRDDLPDG-GA------QHFAECIRAIRELNPQTTIEVLTPDFR-------GNDDALEI 167 (306)
T ss_pred HHHHHHHHHHhCCCeEEEEeecccccccc-ch------HHHHHHHHHHHhhCCCceEEEeCcccc-------CCHHHHHH
Confidence 44555567789999999999844455553 22 35678999999999986553 3332 2233221
Q ss_pred --CCC-cc--ccHHHHHHHHH---------HHHH----HHHcCCCeecCCCCCCc---hHHHHHHHHHHCCCCCceeee
Q 020319 235 --EDG-VI--MNDETVHQLCK---------QAVS----QARAGADVVSPSDMMDG---RVGAIRAALDAEGFQHVSIMS 292 (327)
Q Consensus 235 --~~G-~I--dND~Tv~~Lak---------~Als----~A~AGADiVAPSDMMDG---RV~aIR~aLD~~Gf~~v~IMS 292 (327)
+.+ .| -|=|||.+|-+ ++|. ..+.+-|++-=|.+|=| ....|++.|++--=.+|-||-
T Consensus 168 v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilT 246 (306)
T COG0320 168 VADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILT 246 (306)
T ss_pred HHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEE
Confidence 111 12 37788888764 3332 34578899999999987 566777777665444455543
No 409
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=22.89 E-value=2.9e+02 Score=28.93 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCccccc-----CcCCC-Cc---HHHHHHHHHHHCCCeeEEeeecccCC
Q 020319 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-----AYNDN-GL---VPRTIWLLKDRYPDLVIYTDVALDPY 224 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~-----A~n~~-gl---V~rAIr~iK~~fPdl~VitDVcLc~Y 224 (327)
++.+.+..+.++||++|.|=|+.+....+ .|-. ..+|. |- +.+.|++++++ .|-||-|+.+..-
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~--gi~vilD~v~NH~ 100 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINPLFGTMADFEELVSEAKKR--NIKIMLDMVFNHT 100 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCcccCCHHHHHHHHHHHHHC--CCEEEEEECcccc
Confidence 68888999999999999998864322111 1211 11111 22 44445555544 7999999988654
No 410
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.88 E-value=2.4e+02 Score=26.19 Aligned_cols=43 Identities=19% Similarity=0.463 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeee
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV 219 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDV 219 (327)
++.++++.++|+..|++ |++++| +..++.+-++|+++++.-|+
T Consensus 85 ~edv~~l~~~G~~~viv------------Gtaa~~-----~~~l~~~~~~~g~ivvslD~ 127 (228)
T PRK04128 85 YESIKDAYEIGVENVII------------GTKAFD-----LEFLEKVTSEFEGITVSLDV 127 (228)
T ss_pred HHHHHHHHHCCCCEEEE------------CchhcC-----HHHHHHHHHHcCCEEEEEEc
Confidence 56677777777777654 444553 23455555666776655555
No 411
>PRK01060 endonuclease IV; Provisional
Probab=22.76 E-value=4.1e+02 Score=24.30 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeec
Q 020319 158 GLVQEVAKARDVGVNSVVLFPK 179 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlLFgv 179 (327)
++.+.++.+.++|+.+|=||..
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~ 34 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTG 34 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECC
Confidence 4788899999999999999975
No 412
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=22.61 E-value=2.2e+02 Score=27.50 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHH------HHcCCCeecCCCCCCchHHHHHHHHHHCCCCCceeeeh
Q 020319 241 NDETVHQLCKQAVSQ------ARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY 293 (327)
Q Consensus 241 ND~Tv~~Lak~Als~------A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~IMSY 293 (327)
.+.+++.+.++.... .+--..++.++-+.+|-+..||+.|...|++-+.+..+
T Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~ 188 (399)
T cd00316 130 YDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDG 188 (399)
T ss_pred HHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCC
Confidence 366777777776532 11125677887777788999999999999988788766
No 413
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=22.52 E-value=3.2e+02 Score=28.05 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=41.5
Q ss_pred CCCCcCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceE--ecchhhHHHHHHHHHHcCCCeEEEee
Q 020319 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYR--LGWRHGLVQEVAKARDVGVNSVVLFP 178 (327)
Q Consensus 104 ~R~RRlR~~~~lR~l~~Et~Ls~~dLI~PlFV~eg~~-~~~I~SMPGv~r--~sid~~l~~ev~~~~~lGI~sVlLFg 178 (327)
+|=-|+.=|++|....+.. ++-|+||||.|... ..+- -|..| +-++ .|.+.=+.+.++|++=+++.|
T Consensus 9 RrDLRl~DN~aL~~A~~~~----~~~vlpvyv~dp~~~~~~~---~~~~r~~Fl~e-sL~~L~~~L~~~g~~L~v~~g 78 (472)
T PRK10674 9 RNDLRLHDNLALAAACRDP----SARVLALFIATPAQWAAHD---MAPRQAAFINA-QLNALQIALAEKGIPLLFHEV 78 (472)
T ss_pred CCCCCcchHHHHHHHHhCC----CCCEEEEEEECchhhccCC---CCHHHHHHHHH-HHHHHHHHHHHcCCceEEEec
Confidence 5667888888887665432 23599999998642 1111 13333 3332 233333478999999988864
No 414
>PTZ00413 lipoate synthase; Provisional
Probab=22.51 E-value=1.8e+02 Score=30.21 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=38.3
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEe
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~Vit 217 (327)
+..+ ++.+.++.+.++|++.+++=-+--++++|. .-..+.++|++||+..|++.|-+
T Consensus 177 lD~e-Ep~~vA~av~~~Gl~~~VVTSv~RDDL~D~-------ga~~~a~~I~~Ir~~~p~~~Iev 233 (398)
T PTZ00413 177 LDPN-EPEKVAKAVAEMGVDYIVMTMVDRDDLPDG-------GASHVARCVELIKESNPELLLEA 233 (398)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEEEEEcCCCCChh-------hHHHHHHHHHHHHccCCCCeEEE
Confidence 4554 588888889999998766544311222321 11468899999999889877543
No 415
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=22.47 E-value=7.9e+02 Score=24.59 Aligned_cols=131 Identities=17% Similarity=0.260 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCCCCCCccc------c---cC----------cCCCCc---HHHHHHHHHHHC-CCe
Q 020319 158 GLVQEVAKARDVGVNSVVL-FPKVPDALKSPTG------D---EA----------YNDNGL---VPRTIWLLKDRY-PDL 213 (327)
Q Consensus 158 ~l~~ev~~~~~lGI~sVlL-Fgvi~~~~KD~~G------s---~A----------~n~~gl---V~rAIr~iK~~f-Pdl 213 (327)
+++++++++++.|.++|.+ +|. +. .++..+ . -+ ++.... ..+-|+++++++ |++
T Consensus 130 ~~~~~a~~~~~~Gf~~~KiKvg~-~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~ 207 (404)
T PRK15072 130 ELLDDVARHLELGYKAIRVQCGV-PG-LKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDL 207 (404)
T ss_pred HHHHHHHHHHHcCCCEEEEecCC-CC-cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCc
Confidence 5788999999999999998 332 21 111110 0 01 111111 146799999999 689
Q ss_pred eEEeeecccCCCCC---------Cccee--ecCCCccccHHHHHHHHH----------------HHHHHHHcC-CCeecC
Q 020319 214 VIYTDVALDPYSSD---------GHDGI--VREDGVIMNDETVHQLCK----------------QAVSQARAG-ADVVSP 265 (327)
Q Consensus 214 ~VitDVcLc~YTsh---------GHcGI--l~~~G~IdND~Tv~~Lak----------------~Als~A~AG-ADiVAP 265 (327)
-++.|.+ ..||-. -..++ +.+-=..++.+.+..|.+ ....+.++| +|+|-|
T Consensus 208 ~l~vDaN-~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 208 HLLHDVH-HRLTPIEAARLGKSLEPYRLFWLEDPTPAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred eEEEECC-CCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEec
Confidence 9999986 556532 11232 221111234455555544 223344454 799999
Q ss_pred CCCCCchHHHHHHHHHHCCCCCceee
Q 020319 266 SDMMDGRVGAIRAALDAEGFQHVSIM 291 (327)
Q Consensus 266 SDMMDGRV~aIR~aLD~~Gf~~v~IM 291 (327)
--+--|=|...++..+-+--..+.+|
T Consensus 287 d~~~~GGit~~~kia~lA~~~gi~~~ 312 (404)
T PRK15072 287 TVTHAGGITHLRRIADFAALYQVRTG 312 (404)
T ss_pred CccccCcHHHHHHHHHHHHHcCCcee
Confidence 88888867666665554433333333
No 416
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.45 E-value=3.2e+02 Score=26.95 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHH
Q 020319 197 GLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAI 276 (327)
Q Consensus 197 glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aI 276 (327)
|-+.+||+.+|++.|+.-|...| +|++ ||...+++|||+|=--.|- ...+
T Consensus 184 G~i~~ai~~~r~~~~~~kIeVEv-----------------------~tl~----ea~eal~~gaDiI~LDnm~---~e~v 233 (289)
T PRK07896 184 GSVVAALRAVRAAAPDLPCEVEV-----------------------DSLE----QLDEVLAEGAELVLLDNFP---VWQT 233 (289)
T ss_pred CcHHHHHHHHHHhCCCCCEEEEc-----------------------CCHH----HHHHHHHcCCCEEEeCCCC---HHHH
Confidence 46888999999998875555433 2454 5555689999999665554 6666
Q ss_pred HHHHHH
Q 020319 277 RAALDA 282 (327)
Q Consensus 277 R~aLD~ 282 (327)
|+++..
T Consensus 234 k~av~~ 239 (289)
T PRK07896 234 QEAVQR 239 (289)
T ss_pred HHHHHH
Confidence 666644
No 417
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=22.34 E-value=2.2e+02 Score=27.52 Aligned_cols=121 Identities=19% Similarity=0.243 Sum_probs=70.3
Q ss_pred hHHHHHH-HHHHcCCCeEEE--eecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCC-----eeEEeeecccCCCCCCc
Q 020319 158 GLVQEVA-KARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-----LVIYTDVALDPYSSDGH 229 (327)
Q Consensus 158 ~l~~ev~-~~~~lGI~sVlL--Fgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPd-----l~VitDVcLc~YTshGH 229 (327)
++++++. +-++.|-.-|.- |+.-+..++. .|-+...-+.+..+|+++.|+...+ ..|..++ -||...=+
T Consensus 46 e~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsi--GP~g~~l~ 122 (304)
T PRK09485 46 ELIYQVHLDYFRAGADCAITASYQATFQGFAA-RGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSV--GPYGAYLA 122 (304)
T ss_pred HHHHHHHHHHHHhCCCEEEeeccccCHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEec--CCcccccC
Confidence 4556665 467889876443 5532222221 1211111246788888888877643 7787765 34432211
Q ss_pred ceee-cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHH
Q 020319 230 DGIV-REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALD 281 (327)
Q Consensus 230 cGIl-~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~aIR~aLD 281 (327)
.|-- ..+..++.|+-.+...+|+-.+.++|+|++.=--|.+ --+.++.+++.
T Consensus 123 ~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~ 176 (304)
T PRK09485 123 DGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLK 176 (304)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHH
Confidence 1100 0011266778888889999999999999999888877 22334444444
No 418
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=22.12 E-value=3.1e+02 Score=29.07 Aligned_cols=180 Identities=18% Similarity=0.230 Sum_probs=93.6
Q ss_pred ceeeEEEeeCC--CCcccCCCCCceEecch-------hhHHHHHHHHHHcCCCeEEEeecCCCCC---CCcc--cccCcC
Q 020319 129 FVYPLFIHEGE--EDTPIGAMPGCYRLGWR-------HGLVQEVAKARDVGVNSVVLFPKVPDAL---KSPT--GDEAYN 194 (327)
Q Consensus 129 LI~PlFV~eg~--~~~~I~SMPGv~r~sid-------~~l~~ev~~~~~lGI~sVlLFgvi~~~~---KD~~--Gs~A~n 194 (327)
.||=|.|.+=. ....+. .+|-|. ++- .++.+.+.-+.+|||++|-|-|+..-.. ++.. ..-.|+
T Consensus 129 vIYElhv~~ft~~~~~~~~-~~G~f~-~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~ 206 (605)
T TIGR02104 129 IIYELHIRDFSIHENSGVK-NKGKYL-GLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYD 206 (605)
T ss_pred EEEEEecchhccCCCCCcC-CCCcee-eeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCC
Confidence 58888886422 122232 266664 221 1355678899999999999988643211 1111 112233
Q ss_pred CC--------------Cc---HHHHHHHHHHHC-CCeeEEeeecccCCCCCC----------------cceeecC-CC--
Q 020319 195 DN--------------GL---VPRTIWLLKDRY-PDLVIYTDVALDPYSSDG----------------HDGIVRE-DG-- 237 (327)
Q Consensus 195 ~~--------------gl---V~rAIr~iK~~f-Pdl~VitDVcLc~YTshG----------------HcGIl~~-~G-- 237 (327)
+- .+ +..--.+|++.+ -.|-||-||.+-.....+ ++|-... .|
T Consensus 207 ~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~ 286 (605)
T TIGR02104 207 PLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVG 286 (605)
T ss_pred CccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCccc
Confidence 22 11 122223333333 269999999885432111 1111110 01
Q ss_pred ---ccccHHHHHHHHHHHHHHHH-cCCCee---cCCCCCCchHHHHHHHHHHCCCCCceeeehh------------h---
Q 020319 238 ---VIMNDETVHQLCKQAVSQAR-AGADVV---SPSDMMDGRVGAIRAALDAEGFQHVSIMSYT------------A--- 295 (327)
Q Consensus 238 ---~IdND~Tv~~Lak~Als~A~-AGADiV---APSDMMDGRV~aIR~aLD~~Gf~~v~IMSYS------------A--- 295 (327)
.-.|.+..+.|...+.-..+ -|.|=+ +-+.|-...+..||++|++.. .++-|++=. .
T Consensus 287 ~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~-p~~~ligE~w~~~~~~~~~~~~~~~ 365 (605)
T TIGR02104 287 NDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKID-PNILLYGEGWDLGTPLPPEQKATKA 365 (605)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhC-CCeEEEEccCCCCCCcchhhhhhhh
Confidence 11255666667766666665 587633 224444456788999887752 344443221 0
Q ss_pred ---h--hhccccchhHHHhhc
Q 020319 296 ---K--YASSFYGPFREALDS 311 (327)
Q Consensus 296 ---K--yASsfYGPFRdAa~S 311 (327)
+ .-+.|-.+||+|+..
T Consensus 366 ~~~~~~~~~~~n~~~rd~i~~ 386 (605)
T TIGR02104 366 NAYQMPGIAFFNDEFRDALKG 386 (605)
T ss_pred ccCCCCceEEECCcchhhhcC
Confidence 1 124567799999963
No 419
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=22.05 E-value=2.2e+02 Score=27.55 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeec
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVc 220 (327)
.++++++|.+.|..=|.+=. +.--.|+|.+..-|+. .++|+.+.|+|..
T Consensus 87 tlkeVd~L~~~Ga~IIA~Da-----------T~R~RP~~~~~~~i~~--~k~~~~l~MAD~S 135 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDA-----------TDRPRPDGDLEELIAR--IKYPGQLAMADCS 135 (229)
T ss_pred cHHHHHHHHHCCCcEEEeec-----------ccCCCCcchHHHHHHH--hhcCCcEEEeccC
Confidence 58999999999998666533 1224577778888887 6789999999963
No 420
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.92 E-value=1.3e+02 Score=27.11 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHH---HHHHHHHHHCCCeeEEe-eecccCCCCCCcceeecC
Q 020319 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP---RTIWLLKDRYPDLVIYT-DVALDPYSSDGHDGIVRE 235 (327)
Q Consensus 160 ~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~---rAIr~iK~~fPdl~Vit-DVcLc~YTshGHcGIl~~ 235 (327)
.+.++.+.+.|+..|.+|--..+ ..+..- ...+.++-+. ++|+.+|+.-=++.+.. |+.-|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~-~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------- 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE-THSRKN-LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------- 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH-HHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-------------
Confidence 56788899999999998864221 000000 0122233444 44555555422222222 22222
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 020319 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (327)
Q Consensus 236 ~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDM 268 (327)
..|.+- +.+.+-...++|+|.|.=.|+
T Consensus 142 ---~~~~~~---l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 142 ---KTDPEY---VLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred ---CCCHHH---HHHHHHHHHHcCCCEEEechh
Confidence 234444 445555557899999987665
No 421
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=21.69 E-value=1.7e+02 Score=26.98 Aligned_cols=49 Identities=27% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 020319 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (327)
Q Consensus 199 V~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVA 264 (327)
+.+.|+.+| +--|++|.. =|-|.=.+ ... + +...+.|-...+||||+|-
T Consensus 173 i~~~i~~~r-~~~D~vIv~----------~HwG~e~~-~~p-~----~~q~~~a~~lidaGaDiIi 221 (250)
T PF09587_consen 173 IKEDIREAR-KKADVVIVS----------LHWGIEYE-NYP-T----PEQRELARALIDAGADIII 221 (250)
T ss_pred HHHHHHHHh-cCCCEEEEE----------eccCCCCC-CCC-C----HHHHHHHHHHHHcCCCEEE
Confidence 566677777 335666554 15554321 122 2 2333466677889999983
No 422
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=21.65 E-value=2e+02 Score=27.83 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCCCchHHHHH
Q 020319 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMMDGRVGAIR 277 (327)
Q Consensus 199 V~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~-AGADiVAPSDMMDGRV~aIR 277 (327)
+...++.+.+..+.-.|++|. ||.+. ..|.+...+.+...-+ +||+.|=-.|= +-.+..||
T Consensus 63 m~~h~~~V~r~~~~p~vvaD~---pfg~y--------------~~~~~~av~~a~r~~~~aGa~aVkiEdg-~~~~~~I~ 124 (264)
T PRK00311 63 MIYHTKAVARGAPRALVVADM---PFGSY--------------QASPEQALRNAGRLMKEAGAHAVKLEGG-EEVAETIK 124 (264)
T ss_pred HHHHHHHHHhcCCCCcEEEeC---CCCCc--------------cCCHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHH
Confidence 345667777777776788999 66211 1223333344454445 99999988763 12445555
Q ss_pred HHHHHCCC---CCceeeehhh
Q 020319 278 AALDAEGF---QHVSIMSYTA 295 (327)
Q Consensus 278 ~aLD~~Gf---~~v~IMSYSA 295 (327)
.+- ++|. -|+.++.=+.
T Consensus 125 al~-~agIpV~gHiGL~pq~~ 144 (264)
T PRK00311 125 RLV-ERGIPVMGHLGLTPQSV 144 (264)
T ss_pred HHH-HCCCCEeeeecccceee
Confidence 444 5563 3444554444
No 423
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=21.54 E-value=3.1e+02 Score=27.55 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccc--cHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHH
Q 020319 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIM--NDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGA 275 (327)
Q Consensus 199 V~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~Id--ND~Tv~~Lak~Als~A~AGADiVAPSDMMD-GRV~a 275 (327)
+.-+|+.+-++-+.+-+++ |-..|- .+|.++++- ++.+.+....+|..+.++||.||.=..=.+ --|.+
T Consensus 220 ~~a~i~~l~~~~~~~piiv------YPNSGe--~~d~~~k~w~~p~~~~~~~~~~a~~w~~~GA~iiGGCCrt~p~~I~e 291 (300)
T COG2040 220 IPAAIEELSKLLTGKPIIV------YPNSGE--QYDPAGKTWHGPALSADSYSTLAKSWVEAGARIIGGCCRTGPAHIAE 291 (300)
T ss_pred hHHHHHHHHhcCCCCceEE------cCCccc--ccCcCCCcCCCCCCchhHHHHHHHHHHhcccceeeeccCCChHHHHH
Confidence 4557777755566655555 444221 122222332 577888888889999999999986322221 23888
Q ss_pred HHHHHHHC
Q 020319 276 IRAALDAE 283 (327)
Q Consensus 276 IR~aLD~~ 283 (327)
|+++|++.
T Consensus 292 i~~~~~~~ 299 (300)
T COG2040 292 IAKALKKA 299 (300)
T ss_pred HHHHHhcc
Confidence 99988753
No 424
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=21.52 E-value=4.5e+02 Score=26.28 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=31.3
Q ss_pred EecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHH
Q 020319 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (327)
Q Consensus 152 r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~ 209 (327)
.++.+ ++.+.++.+.+.|++.|.|.|= .+ -..++ +.+.|+.+|+.
T Consensus 89 ~ls~e-ei~~~i~~~~~~Gv~~I~~tGG-EP---------llr~d--l~eli~~l~~~ 133 (373)
T PLN02951 89 LLSQD-EIVRLAGLFVAAGVDKIRLTGG-EP---------TLRKD--IEDICLQLSSL 133 (373)
T ss_pred cCCHH-HHHHHHHHHHHCCCCEEEEECC-CC---------cchhh--HHHHHHHHHhc
Confidence 46775 6888888899999999998873 11 12333 55677777764
No 425
>PRK15108 biotin synthase; Provisional
Probab=21.48 E-value=6.8e+02 Score=24.74 Aligned_cols=95 Identities=17% Similarity=0.304 Sum_probs=57.9
Q ss_pred ecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCccee
Q 020319 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (327)
Q Consensus 153 ~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGI 232 (327)
++.+ ++++.++++.+.|++.|.+ +. . ..++. ..+--.+.+.|+.||+.. + .+|++
T Consensus 76 ls~e-EI~~~a~~~~~~G~~~i~i-~~-~--g~~p~----~~~~e~i~~~i~~ik~~~--i----~v~~s---------- 130 (345)
T PRK15108 76 MEVE-QVLESARKAKAAGSTRFCM-GA-A--WKNPH----ERDMPYLEQMVQGVKAMG--L----ETCMT---------- 130 (345)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEE-Ee-c--CCCCC----cchHHHHHHHHHHHHhCC--C----EEEEe----------
Confidence 6775 7999999999999999855 31 1 01110 111135888999999642 2 12221
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCC---------------eecCCCCCCchHHHHHHHHHHCCC
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGAD---------------VVSPSDMMDGRVGAIRAALDAEGF 285 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGAD---------------iVAPSDMMDGRV~aIR~aLD~~Gf 285 (327)
.|.++ .+.++.| .+||+| |. +.+-.+-|+..|+.+. +.|+
T Consensus 131 ---~G~ls-~e~l~~L-------keAGld~~n~~leT~p~~f~~I~-~~~~~~~rl~~i~~a~-~~G~ 185 (345)
T PRK15108 131 ---LGTLS-ESQAQRL-------ANAGLDYYNHNLDTSPEFYGNII-TTRTYQERLDTLEKVR-DAGI 185 (345)
T ss_pred ---CCcCC-HHHHHHH-------HHcCCCEEeeccccChHhcCCCC-CCCCHHHHHHHHHHHH-HcCC
Confidence 23333 6666654 456666 43 4556778888888885 5677
No 426
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.47 E-value=55 Score=32.19 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=25.3
Q ss_pred HHHHHHHcCCCeecCC--------------CCCCc---hHHHHHHHHHHCCCCCceeeehhh
Q 020319 251 QAVSQARAGADVVSPS--------------DMMDG---RVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 251 ~Als~A~AGADiVAPS--------------DMMDG---RV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
||...++||||||.+- .-+|- +|.+|.++-.+.. .++.+|.|-.
T Consensus 162 ~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~-~dii~l~hGG 222 (268)
T PF09370_consen 162 QARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVN-PDIIVLCHGG 222 (268)
T ss_dssp HHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC--TT-EEEEECT
T ss_pred HHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 8889999999999863 12232 3344444443332 5888888763
No 427
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=21.46 E-value=4e+02 Score=30.20 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=46.6
Q ss_pred cchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccC-----cCCC----CcHHHHHHHHHHHCCCeeEEeeecccCC
Q 020319 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA-----YNDN----GLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (327)
Q Consensus 154 sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A-----~n~~----glV~rAIr~iK~~fPdl~VitDVcLc~Y 224 (327)
+++ ++.+.+.-+.++||++|.|=|+.....-+..|-.- .|++ .-..+-+++++++ .|.||-|+.+...
T Consensus 14 tf~-~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~--Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 14 TFD-DAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARAR--GLGLIVDIVPNHM 90 (825)
T ss_pred CHH-HHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHC--CCEEEEEeccccc
Confidence 344 58999999999999999998864321111122211 1221 1245555556555 7999999999988
Q ss_pred CCCC
Q 020319 225 SSDG 228 (327)
Q Consensus 225 TshG 228 (327)
..+|
T Consensus 91 a~~~ 94 (825)
T TIGR02401 91 AVHL 94 (825)
T ss_pred cccc
Confidence 8764
No 428
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=21.27 E-value=3.1e+02 Score=22.58 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEee------ecccCCCCCCccee
Q 020319 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD------VALDPYSSDGHDGI 232 (327)
Q Consensus 159 l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitD------VcLc~YTshGHcGI 232 (327)
+...+++++.- ...+|+.|+= .|-.--+ ......-.++.+.+..+.=|. |+|| +|.=++.+.||.
T Consensus 12 ~~~~L~~~~~~---~~~V~~qV~l--~~~l~~~-~~~~~~~~~~~~~~~~~~vDF-vv~d~~~~~p~~vIEld~~~h~-- 82 (126)
T PF10881_consen 12 FYKALEEALPD---DYRVFPQVRL--SDLLRPE-GPSRRERKEAFNRINQKHVDF-VVCDKRDGRPVAVIELDGSSHD-- 82 (126)
T ss_pred HHHHHHHHhCc---CcEEEeCccH--HHhhCcc-CCCchhHHHHHHHhcCCCccE-EEEECCCCcEEEEEEecCcccc--
Confidence 34444444443 4678887652 3322211 111223344555555444453 4455 566677777887
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 020319 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (327)
Q Consensus 233 l~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~ 283 (327)
..+...+|+-.+.++ ++||--++==+.=-.-.+..||+.|+++
T Consensus 83 --~~~~~~rD~~k~~~l------~~agiplir~~~~~~~~~~~l~~~l~~~ 125 (126)
T PF10881_consen 83 --QEKRQERDEFKDRVL------KKAGIPLIRISPKDSYSVEELRRDLREA 125 (126)
T ss_pred --chhhHHHHHHHHHHH------HHCCCCEEEEeCCCCCCHHHHHHHHHHh
Confidence 234556666666544 4578776644333334578888888764
No 429
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=21.22 E-value=51 Score=28.01 Aligned_cols=45 Identities=18% Similarity=0.518 Sum_probs=34.9
Q ss_pred eecCCCCCCchHHHHHHHHHHCCCC--CceeeehhhhhhccccchhH
Q 020319 262 VVSPSDMMDGRVGAIRAALDAEGFQ--HVSIMSYTAKYASSFYGPFR 306 (327)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf~--~v~IMSYSAKyASsfYGPFR 306 (327)
+|=|..+..|.++.|-+.|.++||. ..-.+--+..-|..||.-++
T Consensus 6 lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~ 52 (130)
T cd04413 6 IIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHK 52 (130)
T ss_pred EECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhc
Confidence 4667778789999999999999994 44556667777888887554
No 430
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=21.19 E-value=69 Score=30.38 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHcCCCeec----CCCCCCchHHHHHHH
Q 020319 243 ETVHQLCKQAVSQARAGADVVS----PSDMMDGRVGAIRAA 279 (327)
Q Consensus 243 ~Tv~~Lak~Als~A~AGADiVA----PSDMMDGRV~aIR~a 279 (327)
.+.+.+.++|..+.++|||||- |. ..|. ...++..
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~~-~~~~-~ee~~r~ 61 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDYG-GLDG-VSAMKWL 61 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCH-HHHHHHH
Confidence 4556777899999999999983 43 4443 4455555
No 431
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=21.16 E-value=1.7e+02 Score=30.51 Aligned_cols=56 Identities=14% Similarity=0.325 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCeEEEeecCCCCC-C------------Cc---------ccccCcCCCCcHHHHHHHHHHHCCCeeEE
Q 020319 161 QEVAKARDVGVNSVVLFPKVPDAL-K------------SP---------TGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (327)
Q Consensus 161 ~ev~~~~~lGI~sVlLFgvi~~~~-K------------D~---------~Gs~A~n~~glV~rAIr~iK~~fPdl~Vi 216 (327)
...++...+|++.|.++|.|.=.. + +. .+|.--.++.++-.++++||+.+|++.+|
T Consensus 187 ~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~GEeei~l~~~~~l~~~~~~~llI 264 (419)
T COG1519 187 EDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTHEGEEEIILDAHQALKKQFPNLLLI 264 (419)
T ss_pred HHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCCCceEEEecCCCchHHHHHHHHHHHHhhCCCceEE
Confidence 345678889999988888642110 1 11 12223357788999999999999986665
No 432
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=21.06 E-value=4.7e+02 Score=26.74 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=28.8
Q ss_pred HHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee-----cCCCC
Q 020319 203 IWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV-----SPSDM 268 (327)
Q Consensus 203 Ir~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiV-----APSDM 268 (327)
++.+|+++|+..||+-+. |..|.+...+.|-...++|||.+ +|..|
T Consensus 104 i~~~k~~~~~~pvIaSi~--------------------~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~ 154 (385)
T PLN02495 104 FKQLKEEYPDRILIASIM--------------------EEYNKDAWEEIIERVEETGVDALEINFSCPHGM 154 (385)
T ss_pred HHHHHhhCCCCcEEEEcc--------------------CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 566778889988887543 22223344445545567899976 56654
No 433
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=21.06 E-value=53 Score=27.74 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=34.3
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeeehhhhhhccccchh
Q 020319 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPF 305 (327)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYSAKyASsfYGPF 305 (327)
||=|..+..|.++.|-+.|.++|| ..+--+.-+...+..||..+
T Consensus 6 iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~ 51 (135)
T smart00562 6 IIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEH 51 (135)
T ss_pred EECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHh
Confidence 456777778999999999999999 45566677777777777654
No 434
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=20.98 E-value=45 Score=28.26 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=34.1
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--CCceeeehhhhhhccccchh
Q 020319 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPF 305 (327)
Q Consensus 262 iVAPSDMMDGRV~aIR~aLD~~Gf--~~v~IMSYSAKyASsfYGPF 305 (327)
+|=|..+-.|.++.|=+.|.++|| ...-.+.-+..-|..||.-+
T Consensus 6 iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~ 51 (133)
T cd00595 6 LIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEH 51 (133)
T ss_pred EECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHh
Confidence 456777778999999999999999 45555666777777888654
No 435
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=20.98 E-value=2.8e+02 Score=25.54 Aligned_cols=53 Identities=28% Similarity=0.463 Sum_probs=37.7
Q ss_pred cccCCCCCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCC-CeeEEe
Q 020319 142 TPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYT 217 (327)
Q Consensus 142 ~~I~SMPGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fP-dl~Vit 217 (327)
..+.-+||++ -.+|+.++.++|..-|.+||. +.=| ...|+.+|+.+| ++-+++
T Consensus 103 ~~~~~~~G~~-------t~~E~~~A~~~Gad~vk~Fpa--------------~~~G--~~~l~~l~~~~~~~ipvva 156 (206)
T PRK09140 103 LGMVVMPGVA-------TPTEAFAALRAGAQALKLFPA--------------SQLG--PAGIKALRAVLPPDVPVFA 156 (206)
T ss_pred CCCcEEcccC-------CHHHHHHHHHcCCCEEEECCC--------------CCCC--HHHHHHHHhhcCCCCeEEE
Confidence 4556667742 247789999999999999982 1113 667999999997 555543
No 436
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=20.84 E-value=90 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=25.9
Q ss_pred eEecchhhHHHHHHHHHHcCCCeEEEeecCCCC
Q 020319 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA 183 (327)
Q Consensus 151 ~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~ 183 (327)
+||+- ..+.+.++++.+.|++.+++||.-|-.
T Consensus 94 mry~~-P~i~~~l~~l~~~g~~~iivlPl~P~~ 125 (159)
T cd03411 94 MRYGP-PSIEEALEELKADGVDRIVVLPLYPQY 125 (159)
T ss_pred HhcCC-CCHHHHHHHHHHcCCCEEEEEECCccc
Confidence 46663 468888999999999999999986643
No 437
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=20.73 E-value=2.9e+02 Score=26.35 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHc-CCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccC
Q 020319 158 GLVQEVAKARDV-GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (327)
Q Consensus 158 ~l~~ev~~~~~l-GI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~ 223 (327)
.++..++.+.+. |-+.|.++-.|.. ++.|+.+.++|||+-|+| .++||
T Consensus 139 s~i~ai~~L~~~G~~~~I~~v~~vAa-----------------peGi~~v~~~~p~v~I~t-a~iD~ 187 (210)
T COG0035 139 SAIAAIDLLKKRGGPKNIKVVSLVAA-----------------PEGIKAVEKAHPDVEIYT-AAIDE 187 (210)
T ss_pred hHHHHHHHHHHhCCCceEEEEEEEec-----------------HHHHHHHHHhCCCCeEEE-EEecc
Confidence 478889999999 8888888887642 568999999999999988 56666
No 438
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.65 E-value=1.9e+02 Score=28.66 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=49.5
Q ss_pred CCceEecchhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCC
Q 020319 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (327)
Q Consensus 148 PGv~r~sid~~l~~ev~~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTsh 227 (327)
+..+|...+ .+++.++.+.+.|...|-| +|..|. ..|+ -+.+-|+.||+.++ + +..-|
T Consensus 134 ed~~r~~~~-~l~~~~~~~~~~Ga~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~-------v---~l~~H 191 (365)
T TIGR02660 134 EDASRADPD-FLVELAEVAAEAGADRFRF--------ADTVGI--LDPF-STYELVRALRQAVD-------L---PLEMH 191 (365)
T ss_pred cCCCCCCHH-HHHHHHHHHHHcCcCEEEE--------cccCCC--CCHH-HHHHHHHHHHHhcC-------C---eEEEE
Confidence 344566654 5777777778888765432 344452 2232 34456677777652 1 34557
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc
Q 020319 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG 271 (327)
Q Consensus 228 GHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMDG 271 (327)
+|+-. | .=..-++.-.+||||.|--|=.-=|
T Consensus 192 ~HNd~----G---------lA~ANalaA~~aGa~~vd~tl~GiG 222 (365)
T TIGR02660 192 AHNDL----G---------MATANTLAAVRAGATHVNTTVNGLG 222 (365)
T ss_pred ecCCC----C---------hHHHHHHHHHHhCCCEEEEEeeccc
Confidence 77532 2 1112455667899998865544333
No 439
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=20.52 E-value=1.2e+02 Score=27.43 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=45.4
Q ss_pred CCCCcHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 020319 194 NDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (327)
Q Consensus 194 n~~glV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G~IdND~Tv~~Lak~Als~A~AGADiVAPS 266 (327)
|.+.-+.+.++.|+++-.||+|.-..+|..|....+.-+.+-.....++++++.|.+.|-.+ |..|+..+
T Consensus 13 d~~~N~~~~~~~i~~a~adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~---~i~ii~G~ 82 (259)
T cd07577 13 EVEKNLKKVESLIKGVEADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELARET---GAYIVAGL 82 (259)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHh---CcEEEecc
Confidence 44556778888888776899999999998887533221211000112467888888887655 77777653
No 440
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=20.38 E-value=1.4e+02 Score=31.33 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=54.1
Q ss_pred HHHHHHHcCCCeEEEeecCCCC-CCCcccccCcCCCC---cHHHHHHHHHHHCCCeeEEeeecccCCCCCCcceeecCCC
Q 020319 162 EVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (327)
Q Consensus 162 ev~~~~~lGI~sVlLFgvi~~~-~KD~~Gs~A~n~~g---lV~rAIr~iK~~fPdl~VitDVcLc~YTshGHcGIl~~~G 237 (327)
.++.+.+.|+..|-+|-...+. .++..+. +.+. .+.++|+.+|+.-.++.+-+ ..|. |+
T Consensus 90 ~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~---s~~e~l~~~~~~v~~ak~~G~~v~~~~----e~~~----------Da 152 (524)
T PRK12344 90 NLQALLDAGTPVVTIFGKSWDLHVTEALRT---TLEENLAMIRDSVAYLKAHGREVIFDA----EHFF----------DG 152 (524)
T ss_pred HHHHHHhCCCCEEEEEECCCHHHHHHHcCC---CHHHHHHHHHHHHHHHHHcCCeEEEcc----cccc----------cc
Confidence 4567888999999998543321 1222221 1122 34456666666643322111 1111 11
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHH
Q 020319 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAAL 280 (327)
Q Consensus 238 ~IdND~Tv~~Lak~Als~A~AGADiVAPSDMMD--------GRV~aIR~aL 280 (327)
.- .+.+.|.+.+-...++|||.|.-.|+.- -.|..+|+.+
T Consensus 153 ~r---~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 153 YK---ANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred cc---CCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 11 1355555566566799999999998853 2466666665
No 441
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=20.29 E-value=1e+02 Score=24.85 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=20.6
Q ss_pred cCCCeecCCCCCC-chHHHHHHHHHHCCCCCceeeehhh
Q 020319 258 AGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTA 295 (327)
Q Consensus 258 AGADiVAPSDMMD-GRV~aIR~aLD~~Gf~~v~IMSYSA 295 (327)
-++=|||+|.||+ |++..+=+.|-.+--+-+-+..|.+
T Consensus 80 ~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~ 118 (126)
T PF10996_consen 80 GPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQA 118 (126)
T ss_dssp SSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCC
Confidence 4678899999997 5544444333222123345555554
No 442
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=20.23 E-value=6.5e+02 Score=24.76 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCCceEecchhhHHHHHH-HHHHcCCCeEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHC
Q 020319 147 MPGCYRLGWRHGLVQEVA-KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY 210 (327)
Q Consensus 147 MPGv~r~sid~~l~~ev~-~~~~lGI~sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~f 210 (327)
+|..+.++.+ .++++. ++.++| +.++|.- +.. .+...|.+.+....|++.-
T Consensus 3 ~p~~i~fG~g--~l~~l~~~~~~~g-~r~livt--~~~--------~~~~~g~~~~v~~~L~~~~ 54 (380)
T cd08185 3 QPTKIVFGAG--KLNELGEEALKPG-KKALIVT--GNG--------SSKKTGYLDRVIELLKQAG 54 (380)
T ss_pred CCCeEEECcC--HHHHHHHHHHhcC-CeEEEEe--CCC--------chhhccHHHHHHHHHHHcC
Confidence 6788888853 455555 455567 7777753 111 1234588888888888753
No 443
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=20.21 E-value=3.6e+02 Score=24.29 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=51.9
Q ss_pred HHcCCC-eEEEeecCCCCCCCcccccCcCCCCcHHHHHHHHHHHCCCee-EEeeecccCCCCCCcceeecCCCccccHHH
Q 020319 167 RDVGVN-SVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV-IYTDVALDPYSSDGHDGIVREDGVIMNDET 244 (327)
Q Consensus 167 ~~lGI~-sVlLFgvi~~~~KD~~Gs~A~n~~glV~rAIr~iK~~fPdl~-VitDVcLc~YTshGHcGIl~~~G~IdND~T 244 (327)
..+|+. .+++|- .+..-.|+ +.+|++.+|+.+|+.. |..+ ++|.
T Consensus 45 hR~gl~d~ili~~----nHi~~~g~--------i~~av~~~~~~~~~~~~I~VE--------------------v~~~-- 90 (169)
T PF01729_consen 45 HRLGLSDMILIKD----NHIAFFGG--------IEEAVKAARQAAPEKKKIEVE--------------------VENL-- 90 (169)
T ss_dssp HHSSTTSSEEE-H----HHHHHHSS--------HHHHHHHHHHHSTTTSEEEEE--------------------ESSH--
T ss_pred EECCCCCcEEehH----HHHHHhCC--------HHHHHHHHHHhCCCCceEEEE--------------------cCCH--
Confidence 456666 455543 23434443 8899999999998765 4432 2332
Q ss_pred HHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCCCcee
Q 020319 245 VHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSI 290 (327)
Q Consensus 245 v~~Lak~Als~A~AGADiVAPSDMMDGRV~aIR~aLD~~Gf~~v~I 290 (327)
+|+...+++|+|+|==--|--..+..+.+.|++.+. ++-|
T Consensus 91 -----ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~-~v~i 130 (169)
T PF01729_consen 91 -----EEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNP-RVKI 130 (169)
T ss_dssp -----HHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTT-TSEE
T ss_pred -----HHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCC-cEEE
Confidence 266667789999996666655777777777766554 3444
Done!