RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020319
(327 letters)
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Escherichia coli [TaxId:
562]}
Length = 323
Score = 225 bits (574), Expect = 2e-72
Identities = 99/223 (44%), Positives = 140/223 (62%), Gaps = 6/223 (2%)
Query: 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLV 160
L +RPRR RKSPA+RA F+ET LS + V P+F+ E +D + AMPG R+ +H L
Sbjct: 3 LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LA 61
Query: 161 QEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220
+E+ + + G+ SV+ F + TG +A+ ++GLV R + K P++++ +D
Sbjct: 62 REIERIANAGIRSVMTFGISHHTDE--TGSDAWREDGLVARMSRICKQTVPEMIVMSDTC 119
Query: 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280
Y+S GH G++ E G + ND T+ L KQAV A AGAD ++PS MDG+V AIR AL
Sbjct: 120 FCEYTSHGHCGVLCEHG-VDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL 178
Query: 281 DAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTKLQ 323
DA GF+ +IMSY+ K+ASSFYGPFREA S GD+K+
Sbjct: 179 DAAGFKDTAIMSYSTKFASSFYGPFREAAGSAL-KGDRKSYQM 220
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 329
Score = 225 bits (574), Expect = 2e-72
Identities = 95/221 (42%), Positives = 141/221 (63%), Gaps = 4/221 (1%)
Query: 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGWRHGLVQ 161
R RRNR+ R +E L+ + + P+F+ +G + I +MPG RL L+
Sbjct: 6 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQ-LLI 64
Query: 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221
E + +G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVAL
Sbjct: 65 EAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVAL 124
Query: 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281
DP+++ G +GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL+
Sbjct: 125 DPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALE 184
Query: 282 AEGFQHVSIMSYTAKYASSFYGPFREALDS--NPRFGDKKT 320
+ G +V +M+Y+AKYAS++YGPFR+A+ S N G+K T
Sbjct: 185 SAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKAT 225
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 215 bits (550), Expect = 7e-69
Identities = 111/218 (50%), Positives = 142/218 (65%), Gaps = 5/218 (2%)
Query: 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQE 162
RPRR R++ A+R QE L+ + V+PLF+ G + +MPG +R V+E
Sbjct: 2 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDR-AVEE 60
Query: 163 VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222
+ D+G+ + LF K+ G EAYNDNG++ + I +K P+L I TDVALD
Sbjct: 61 CKELYDLGIQGIDLFGIPEQ--KTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALD 118
Query: 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA 282
P++ GHDG+V +DG+I+NDETV L K AVS A AGAD VSPSDMMDGR+GAIR ALD
Sbjct: 119 PFTPFGHDGLV-KDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDE 177
Query: 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKT 320
V I+SY AKYASSFYGPFR+AL S P+FGDK T
Sbjct: 178 TDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKST 215
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 210 bits (537), Expect = 5e-67
Identities = 83/211 (39%), Positives = 128/211 (60%), Gaps = 4/211 (1%)
Query: 113 PAMRA-SFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAKARDVG 170
P +RA T L+ +N +YP+F+ + +D PI ++PG R G + L + + + G
Sbjct: 4 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR-LEEMLRPLVEEG 62
Query: 171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230
+ V++F K G A ++ I LL+ +P+L++ DV L PY+S GH
Sbjct: 63 LRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHC 122
Query: 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH-VS 289
G++ E+G +E+ +L + A++ A+AG VV+PSDMMDGRV AI+ AL A G + VS
Sbjct: 123 GLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVS 182
Query: 290 IMSYTAKYASSFYGPFREALDSNPRFGDKKT 320
+MSY+AK+AS FYGPFR+A S+P FGD++
Sbjct: 183 VMSYSAKFASCFYGPFRDAAKSSPAFGDRRC 213
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 194 bits (493), Expect = 3e-60
Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 4/229 (1%)
Query: 95 PVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRL 153
+S P +R E L+ ++PLFI + +D T I ++P R+
Sbjct: 7 LETEPTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRI 66
Query: 154 GWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212
G L + G+ SV+LF + K P G A + G V + I +++ +P+
Sbjct: 67 GVNR-LKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPE 125
Query: 213 LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272
L I DV L Y+S GH G++ +DG I + +V +L AV+ A+AGA V+PSDM+DGR
Sbjct: 126 LYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGR 185
Query: 273 VGAIRAALDA-EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKT 320
+ I+ L ++SY AK++ + YGPFR+A S P GD+K
Sbjct: 186 IRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKC 234
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 29.4 bits (65), Expect = 0.66
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 109 NRKSPAMRASFQET 122
+ KS ASFQ T
Sbjct: 1429 STKSWLSAASFQNT 1442
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 29.0 bits (64), Expect = 1.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 108 RNRKSPAMRASFQET 122
R+ MR SF+ET
Sbjct: 1390 RSNTGALMRCSFEET 1404
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 27.3 bits (59), Expect = 2.3
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 237 GVIMNDETVHQLC------KQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF 285
G ND ++ QA + AD V+ + +G AI L+ G+
Sbjct: 175 GDGENDLDAFKVVGYKVAVAQAPKILKENADYVTKKEYGEGGAEAIYHILEKFGY 229
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 26.7 bits (58), Expect = 4.7
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 132 PLFIHE---GEEDTPIGAMPGC----YRLGWRHGLVQEVAKARDVGVN 172
P++I E G+ D P RL + + + ++ D+G +
Sbjct: 387 PMYITENGMGDIDKGDLPKPVALEDHTRLDYIQRHLSVLKQSIDLGAD 434
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator
PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 25.0 bits (54), Expect = 8.6
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 98 PSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTP 143
PSL L+ R R S + L+ + + + E
Sbjct: 2 PSLTLTLLQAREAAMSFFRPSLNQHGLTEQQWRVIRILRQQGEMES 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.400
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,200,626
Number of extensions: 55275
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 13
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)