Query 020321
Match_columns 327
No_of_seqs 272 out of 1711
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 15:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_J Photosystem II reaction 13.1 2.1E+02 0.0071 19.3 3.4 25 207-231 5-29 (40)
2 2cx6_A Hypothetical protein YH 6.8 2.1E+02 0.007 21.8 1.8 24 173-196 20-43 (90)
3 2bnl_A Modulator protein RSBR; 6.2 1.4E+02 0.0048 25.1 0.6 41 167-208 47-87 (136)
4 2za4_B Barstar; protein-protei 6.0 2.4E+02 0.0084 21.1 1.8 25 173-197 20-44 (90)
5 1ty4_C Egg laying defective EG 4.5 3.5E+02 0.012 19.4 1.6 27 163-189 28-57 (57)
6 3fia_A Intersectin-1; EH 1 dom 2.7 4.8E+02 0.016 21.0 1.1 19 48-70 11-29 (121)
7 3m73_A Tellurite resistance pr 2.7 2.6E+03 0.087 18.7 8.6 31 294-324 42-72 (314)
8 1vr8_A GTP binding regulator; 2.7 4.6E+02 0.016 22.1 1.0 10 40-49 7-16 (142)
9 2lx0_A Membrane fusion protein 2.7 1.1E+03 0.039 14.6 2.6 18 300-317 13-30 (32)
10 2zt9_E Cytochrome B6-F complex 2.4 1.3E+03 0.045 14.5 4.0 22 293-314 5-26 (31)
No 1
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=13.12 E-value=2.1e+02 Score=19.34 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=15.9
Q ss_pred hccccchHHHHHHHHHHHHHHHHHH
Q 020321 207 VDLLHPGLVGLVVLRDVALVGGALY 231 (327)
Q Consensus 207 ~~~lp~wl~~lIi~Rdl~v~~g~~~ 231 (327)
.|.+|.|++..+..--++-+.+.++
T Consensus 5 tGRiPLWlvgtv~G~~vi~~~giFf 29 (40)
T 3arc_J 5 GGRIPLWIVATVAGMGVIVIVGLFF 29 (40)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccEEeeeeehhhhhhheeeEEE
Confidence 3789999988777644433334443
No 2
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=6.80 E-value=2.1e+02 Score=21.77 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.5
Q ss_pred HHHhcCCCCCCcccccchhhHHHH
Q 020321 173 YIARRMKIDSVVGSYLDPLADKIL 196 (327)
Q Consensus 173 ~lARk~n~~S~lG~~LDplADKil 196 (327)
.+|+.++...-+|+=||.+.|-+.
T Consensus 20 ~~~~~~~~p~~fG~NlDAL~D~Lt 43 (90)
T 2cx6_A 20 DFSQTFGLAKDKVRDLDSLWDVLM 43 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHH
T ss_pred HHHHHhCCchhhCCCHHHHHHHHc
Confidence 678999999999999999999764
No 3
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=6.25 E-value=1.4e+02 Score=25.07 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHhHHHHhcCCCCCCcccccchhhHHHHHHHHHHHHHHhc
Q 020321 167 TDWLDGYIARRMKIDSVVGSYLDPLADKILIGCVALAMVHVD 208 (327)
Q Consensus 167 TD~LDG~lARk~n~~S~lG~~LDplADKilv~~~~v~L~~~~ 208 (327)
-|++|=-++.-.+ ...+.+.||.+|+|+.-+.-++.++-.|
T Consensus 47 ~Efv~lils~i~~-~~~~~e~l~~Faer~VqlGwpL~~lT~G 87 (136)
T 2bnl_A 47 KEYIDILLLSVKD-ENAAESQISELALRAVQIGLSMKFLATA 87 (136)
T ss_dssp HHHHHHHHTCSSC-TTTTHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHccc-chhHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 5778888888878 8899999999999987765544444433
No 4
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=5.97 E-value=2.4e+02 Score=21.08 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.9
Q ss_pred HHHhcCCCCCCcccccchhhHHHHH
Q 020321 173 YIARRMKIDSVVGSYLDPLADKILI 197 (327)
Q Consensus 173 ~lARk~n~~S~lG~~LDplADKilv 197 (327)
.+++.++...-+|+=+|.+.|-+.-
T Consensus 20 ~l~~~l~~P~~fG~NlDAL~D~L~~ 44 (90)
T 2za4_B 20 TLKKELALPEYYGENLDALWAALTG 44 (90)
T ss_dssp HHHHHTTCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHhCCCcccCCCHHHHHHHhcC
Confidence 6789999999999999999997654
No 5
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=4.46 E-value=3.5e+02 Score=19.38 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=10.8
Q ss_pred HHHHHHHHhHHHH---hcCCCCCCcccccc
Q 020321 163 ISGATDWLDGYIA---RRMKIDSVVGSYLD 189 (327)
Q Consensus 163 lA~lTD~LDG~lA---Rk~n~~S~lG~~LD 189 (327)
++..+|-+|-.+- |+--..|-+|+++|
T Consensus 28 L~~MCDdFDaeMMSys~~~tsrSLl~r~~d 57 (57)
T 1ty4_C 28 LAAMCDDFDAQMMSYSAHASDRSLFHRLLD 57 (57)
T ss_dssp HHHHHHHHHHHHGGGSCCC-----------
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHhcC
Confidence 4567899998763 44334456777766
No 6
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=2.74 E-value=4.8e+02 Score=20.96 Aligned_cols=19 Identities=21% Similarity=0.681 Sum_probs=10.3
Q ss_pred CCccccCCCCceeecCCCccccc
Q 020321 48 FSKWIAPFQGPLFLSSPPWKLSQ 70 (327)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~ 70 (327)
......|++|. +++|.+++
T Consensus 11 ~~~~~~~~~g~----~~~W~it~ 29 (121)
T 3fia_A 11 VAQFPTPFGGS----LDTWAITV 29 (121)
T ss_dssp -----CTTSCC----TTTSCCCH
T ss_pred HHhccccccCC----CCCCCCCH
Confidence 34455788884 57998753
No 7
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=2.72 E-value=2.6e+03 Score=18.66 Aligned_cols=31 Identities=6% Similarity=0.050 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhhhh
Q 020321 294 TYLSLLVASTTVASTAAYGVQYMRKKSTLMS 324 (327)
Q Consensus 294 ~~L~wl~~~lTv~S~v~Y~~~Y~~~~~~~~~ 324 (327)
..+.++..++-+.-.+.|..++++......+
T Consensus 42 ~~l~~l~~~l~~~l~~~~~~r~~~~p~~~~~ 72 (314)
T 3m73_A 42 DVLGIVASAVWILFILMYAYKLRYYFEEVRA 72 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444444455556778888766554433
No 8
>1vr8_A GTP binding regulator; TM1622, structural genomics, joint CE structural genomics, JCSG, protein structure initiative, PS signaling protein; 1.75A {Thermotoga maritima} SCOP: d.312.1.1
Probab=2.69 E-value=4.6e+02 Score=22.08 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=6.8
Q ss_pred cccCCCCCCC
Q 020321 40 THLSHRPPFS 49 (327)
Q Consensus 40 ~~~~~~~~~~ 49 (327)
.||||+||.|
T Consensus 7 ~~~~~vpP~s 16 (142)
T 1vr8_A 7 HHHHHHPPEA 16 (142)
T ss_dssp CSSCSSCCTT
T ss_pred ccccCCCCcc
Confidence 3677777776
No 9
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=2.68 E-value=1.1e+03 Score=14.56 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=8.1
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 020321 300 VASTTVASTAAYGVQYMR 317 (327)
Q Consensus 300 ~~~lTv~S~v~Y~~~Y~~ 317 (327)
++.+|....--+..+|+.
T Consensus 13 valltflafgfwlfkylq 30 (32)
T 2lx0_A 13 VALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444443334455554
No 10
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=2.44 E-value=1.3e+03 Score=14.52 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 020321 293 ITYLSLLVASTTVASTAAYGVQ 314 (327)
Q Consensus 293 ~~~L~wl~~~lTv~S~v~Y~~~ 314 (327)
..|..++...+.++++...|.+
T Consensus 5 i~y~~~l~~~~~iA~GL~fGLr 26 (31)
T 2zt9_E 5 VAYIGFLALFTGIAAGLLFGLR 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777887666654
Done!