Query 020321
Match_columns 327
No_of_seqs 272 out of 1711
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 15:08:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020321.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020321hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 6.7 2.5E+02 0.018 16.7 3.4 23 210-232 2-24 (34)
2 d2al6a2 b.55.1.5 (A:254-363) F 5.3 1.1E+02 0.0079 22.9 1.3 10 165-174 86-95 (110)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.8 6.2E+02 0.045 20.6 5.5 23 148-170 22-44 (248)
4 d2cx6a1 c.9.1.1 (A:1-90) Hypot 3.8 2.1E+02 0.015 20.2 2.0 24 173-196 20-43 (90)
5 d1ay7b_ c.9.1.1 (B:) Barstar ( 2.8 2.9E+02 0.021 19.2 1.8 23 173-195 19-41 (89)
6 d1i6ua_ d.140.1.1 (A:) Ribosom 2.5 2.4E+02 0.018 20.9 1.1 11 187-197 2-12 (129)
7 d2axtk1 f.23.36.1 (K:10-46) Ph 2.2 3.4E+02 0.025 16.3 1.2 15 186-200 7-21 (37)
8 d1an7a_ d.140.1.1 (A:) Ribosom 1.9 3.6E+02 0.026 19.6 1.3 9 189-197 2-10 (136)
9 d2hxva1 c.71.1.2 (A:148-345) R 1.8 2E+02 0.014 22.3 -0.6 16 170-185 11-26 (198)
10 d2gy9h1 d.140.1.1 (H:3-128) Ri 1.6 4.7E+02 0.034 18.9 1.3 10 189-198 2-11 (126)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.73 E-value=2.5e+02 Score=16.66 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=13.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 020321 210 LHPGLVGLVVLRDVALVGGALYQ 232 (327)
Q Consensus 210 lp~wl~~lIi~Rdl~v~~g~~~l 232 (327)
+|.|++..+..--++-+.|.+++
T Consensus 2 iPLWlv~tv~G~~vi~~vG~FfY 24 (34)
T d2axtj1 2 IPLWIVATVAGMGVIVIVGLFFY 24 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEeeehhhhhhHhheeeeee
Confidence 68888877766444444444443
No 2
>d2al6a2 b.55.1.5 (A:254-363) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.33 E-value=1.1e+02 Score=22.92 Aligned_cols=10 Identities=40% Similarity=0.837 Sum_probs=8.1
Q ss_pred HHHHHHhHHH
Q 020321 165 GATDWLDGYI 174 (327)
Q Consensus 165 ~lTD~LDG~l 174 (327)
.+.|.+|||.
T Consensus 86 ~lAdLIdGYC 95 (110)
T d2al6a2 86 NMADLIDGYC 95 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhheE
Confidence 4579999996
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.84 E-value=6.2e+02 Score=20.60 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=16.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Q 020321 148 MITNEMYSSALVALAISGATDWL 170 (327)
Q Consensus 148 ~i~~~~~~~A~~lf~lA~lTD~L 170 (327)
++.++++..+.+++++..+.|++
T Consensus 22 ~~~~~~~~~a~~~~~~~~~~~~v 44 (248)
T d2r6gf1 22 MYAQGEYLFAITTLILSSAGLYI 44 (248)
T ss_dssp HHGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHheEEE
Confidence 34567777777777777777777
No 4
>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=2.1e+02 Score=20.17 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.9
Q ss_pred HHHhcCCCCCCcccccchhhHHHH
Q 020321 173 YIARRMKIDSVVGSYLDPLADKIL 196 (327)
Q Consensus 173 ~lARk~n~~S~lG~~LDplADKil 196 (327)
.+|+.++...-+|+-+|.+.|-+.
T Consensus 20 ~~~~~l~fp~~fG~NlDAl~D~lt 43 (90)
T d2cx6a1 20 DFSQTFGLAKDKVRDLDSLWDVLM 43 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHH
T ss_pred HHHHHcCCcchhCCCHHHHHHHHc
Confidence 468999999999999999999663
No 5
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=2.79 E-value=2.9e+02 Score=19.18 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.3
Q ss_pred HHHhcCCCCCCcccccchhhHHH
Q 020321 173 YIARRMKIDSVVGSYLDPLADKI 195 (327)
Q Consensus 173 ~lARk~n~~S~lG~~LDplADKi 195 (327)
.++++++...-+|.-+|.+.|-+
T Consensus 19 ~~~~~l~~p~~~G~N~DAl~D~l 41 (89)
T d1ay7b_ 19 TLKKELALPEYYGENLDALWDCL 41 (89)
T ss_dssp HHHHHTTCCTTCCSSHHHHHHHH
T ss_pred HHHHHcCCCcccCCCHHHHHHHH
Confidence 57888999999999999999954
No 6
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.54 E-value=2.4e+02 Score=20.94 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=8.4
Q ss_pred ccchhhHHHHH
Q 020321 187 YLDPLADKILI 197 (327)
Q Consensus 187 ~LDplADKilv 197 (327)
..||+||.+.-
T Consensus 2 m~D~iaD~ltr 12 (129)
T d1i6ua_ 2 LMDPLANALNH 12 (129)
T ss_dssp CCCHHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 57999997654
No 7
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.23 E-value=3.4e+02 Score=16.30 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=9.7
Q ss_pred cccchhhHHHHHHHH
Q 020321 186 SYLDPLADKILIGCV 200 (327)
Q Consensus 186 ~~LDplADKilv~~~ 200 (327)
+.+||+.|-+=++.+
T Consensus 7 ~~f~PivdvlPiIPv 21 (37)
T d2axtk1 7 AIFDPLVDVLPVIPV 21 (37)
T ss_dssp GGCHHHHHHGGGHHH
T ss_pred hhhchHHHHhccHHH
Confidence 467888887654433
No 8
>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]}
Probab=1.95 E-value=3.6e+02 Score=19.60 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=6.6
Q ss_pred chhhHHHHH
Q 020321 189 DPLADKILI 197 (327)
Q Consensus 189 DplADKilv 197 (327)
||+||.+.-
T Consensus 2 D~iaD~lt~ 10 (136)
T d1an7a_ 2 DPIADMLTR 10 (136)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 888887654
No 9
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=1.77 E-value=2e+02 Score=22.29 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=12.1
Q ss_pred HhHHHHhcCCCCCCcc
Q 020321 170 LDGYIARRMKIDSVVG 185 (327)
Q Consensus 170 LDG~lARk~n~~S~lG 185 (327)
+||++|..-|...-+.
T Consensus 11 lDG~ia~~~g~~~wit 26 (198)
T d2hxva1 11 LDGKIADHRGDSKWIT 26 (198)
T ss_dssp TTSEEECTTSCCTTSC
T ss_pred CCCCeECCCCCCCcCC
Confidence 7999999988754443
No 10
>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]}
Probab=1.56 E-value=4.7e+02 Score=18.86 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=0.0
Q ss_pred chhhHHHHHH
Q 020321 189 DPLADKILIG 198 (327)
Q Consensus 189 DplADKilv~ 198 (327)
||+||-+.-+
T Consensus 2 D~iaD~l~~I 11 (126)
T d2gy9h1 2 DPIADMLTRI 11 (126)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHh
Done!