Query 020323
Match_columns 327
No_of_seqs 175 out of 1217
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zz1_A Histone deacetylase-lik 100.0 3E-84 1E-88 628.7 32.3 305 13-326 59-366 (369)
2 2pqp_A HD7A, histone deacetyla 100.0 4.6E-79 1.6E-83 596.0 29.7 300 13-326 82-410 (421)
3 3q9b_A Acetylpolyamine amidohy 100.0 7.8E-79 2.7E-83 582.9 24.0 264 14-292 47-341 (341)
4 3men_A Acetylpolyamine aminohy 100.0 6.3E-78 2.2E-82 579.7 25.6 263 14-292 67-359 (362)
5 2vqm_A HD4, histone deacetylas 100.0 2E-77 6.8E-82 588.8 27.2 301 13-326 54-381 (413)
6 3max_A HD2, histone deacetylas 100.0 3.5E-76 1.2E-80 569.5 29.7 267 13-295 45-318 (367)
7 3ew8_A HD8, histone deacetylas 100.0 7.4E-76 2.5E-80 569.9 32.1 267 13-295 54-327 (388)
8 4a69_A Histone deacetylase 3,; 100.0 4.2E-76 1.4E-80 571.4 27.1 266 13-294 45-318 (376)
9 1c3p_A Protein (HDLP (histone 100.0 1.9E-75 6.7E-80 568.0 27.5 266 13-295 44-318 (375)
10 4h08_A Putative hydrolase; GDS 80.3 12 0.0004 31.0 9.8 59 191-261 50-108 (200)
11 1ivn_A Thioesterase I; hydrola 66.7 24 0.00082 28.7 8.3 40 213-259 56-96 (190)
12 3hp4_A GDSL-esterase; psychrot 60.3 27 0.00093 28.0 7.4 59 190-260 42-101 (185)
13 4hf7_A Putative acylhydrolase; 56.0 17 0.00058 30.5 5.5 40 190-234 54-94 (209)
14 3bzw_A Putative lipase; protei 54.7 23 0.00079 31.0 6.4 22 218-239 87-109 (274)
15 1vjg_A Putative lipase from th 53.0 15 0.00053 30.6 4.7 47 218-269 87-135 (218)
16 3p94_A GDSL-like lipase; serin 49.6 35 0.0012 27.7 6.3 71 189-269 49-120 (204)
17 3dff_A Teicoplanin pseudoaglyc 49.3 19 0.00066 32.4 5.0 31 203-233 132-162 (273)
18 3dci_A Arylesterase; SGNH_hydr 49.2 69 0.0023 27.0 8.4 43 213-260 94-138 (232)
19 3mil_A Isoamyl acetate-hydroly 48.4 89 0.003 25.8 9.0 71 190-269 47-119 (240)
20 3dfi_A Pseudoaglycone deacetyl 47.6 22 0.00076 31.9 5.1 31 203-233 129-159 (270)
21 3rjt_A Lipolytic protein G-D-S 47.5 15 0.00053 30.1 3.8 55 214-269 78-136 (216)
22 2q0q_A ARYL esterase; SGNH hyd 47.3 51 0.0017 27.0 7.1 36 214-254 77-114 (216)
23 2buf_A Acetylglutamate kinase; 46.5 67 0.0023 29.1 8.3 62 202-275 9-70 (300)
24 1yzf_A Lipase/acylhydrolase; s 44.4 71 0.0024 25.3 7.4 30 215-249 63-93 (195)
25 1g3q_A MIND ATPase, cell divis 43.4 19 0.00066 30.5 3.8 21 127-148 25-45 (237)
26 1es9_A PAF-AH, platelet-activa 43.3 34 0.0012 28.9 5.4 17 215-231 89-106 (232)
27 3q9l_A Septum site-determining 41.9 21 0.0007 30.8 3.9 20 129-149 27-46 (260)
28 1hyq_A MIND, cell division inh 41.9 21 0.0007 31.0 3.9 21 127-148 25-45 (263)
29 3d2m_A Putative acetylglutamat 41.7 40 0.0014 32.3 6.2 61 201-274 25-85 (456)
30 3kjh_A CO dehydrogenase/acetyl 41.5 16 0.00055 31.0 3.0 20 127-148 22-41 (254)
31 2bty_A Acetylglutamate kinase; 38.0 74 0.0025 28.4 7.1 62 202-275 4-65 (282)
32 2xdq_A Light-independent proto 37.7 66 0.0023 30.8 7.1 71 207-292 85-156 (460)
33 1cp2_A CP2, nitrogenase iron p 37.6 25 0.00086 30.5 3.8 25 128-154 24-48 (269)
34 3dc7_A Putative uncharacterize 36.9 34 0.0012 28.7 4.4 52 218-269 81-135 (232)
35 3ea0_A ATPase, para family; al 36.1 32 0.0011 29.2 4.1 26 127-152 27-52 (245)
36 2vpt_A Lipolytic enzyme; ester 35.1 64 0.0022 26.7 5.8 47 201-256 69-116 (215)
37 2ap9_A NAG kinase, acetylgluta 34.9 55 0.0019 29.6 5.7 65 199-275 5-69 (299)
38 2afh_E Nitrogenase iron protei 34.2 33 0.0011 30.3 4.0 24 129-154 26-49 (289)
39 3pg5_A Uncharacterized protein 34.0 26 0.00088 32.6 3.4 23 130-154 27-49 (361)
40 2xj4_A MIPZ; replication, cell 34.0 27 0.00094 31.0 3.4 28 122-150 22-49 (286)
41 2rd5_A Acetylglutamate kinase- 33.7 51 0.0017 29.8 5.3 63 201-275 18-80 (298)
42 1fxw_F Alpha2, platelet-activa 32.1 1.1E+02 0.0038 25.5 7.0 16 216-231 91-107 (229)
43 1wcv_1 SOJ, segregation protei 30.1 35 0.0012 29.6 3.4 20 129-150 31-50 (257)
44 3la6_A Tyrosine-protein kinase 29.8 37 0.0013 30.5 3.6 14 135-148 122-135 (286)
45 1ii7_A MRE11 nuclease; RAD50, 29.0 2.6E+02 0.0089 25.0 9.3 63 201-274 23-85 (333)
46 2waa_A Acetyl esterase, xylan 28.8 1.6E+02 0.0056 26.7 8.0 18 217-234 223-241 (347)
47 3pdi_B Nitrogenase MOFE cofact 28.6 69 0.0023 31.0 5.5 72 206-291 79-154 (458)
48 2q8u_A Exonuclease, putative; 28.4 2.3E+02 0.0078 25.4 8.8 63 201-275 44-107 (336)
49 3end_A Light-independent proto 28.1 46 0.0016 29.6 3.9 28 121-150 57-84 (307)
50 3aek_B Light-independent proto 27.7 1.2E+02 0.0042 29.8 7.2 69 206-291 72-141 (525)
51 1mio_B Nitrogenase molybdenum 27.4 84 0.0029 30.2 5.9 71 206-290 83-157 (458)
52 3fkq_A NTRC-like two-domain pr 27.4 42 0.0015 31.2 3.6 31 121-154 160-190 (373)
53 3bfv_A CAPA1, CAPB2, membrane 27.2 49 0.0017 29.4 3.9 14 135-148 112-125 (271)
54 2hsj_A Putative platelet activ 27.2 80 0.0027 25.8 5.0 17 216-232 82-99 (214)
55 3cio_A ETK, tyrosine-protein k 27.0 48 0.0016 29.9 3.8 14 135-148 134-147 (299)
56 2v5h_A Acetylglutamate kinase; 26.7 91 0.0031 28.6 5.7 61 202-274 32-92 (321)
57 3tho_B Exonuclease, putative; 26.3 2.4E+02 0.0083 26.0 8.8 65 200-275 25-89 (379)
58 3skv_A SSFX3; jelly roll, GDSL 26.2 1.6E+02 0.0055 27.7 7.5 21 213-233 238-259 (385)
59 2ph1_A Nucleotide-binding prot 26.1 47 0.0016 28.9 3.5 21 127-148 41-61 (262)
60 3fwy_A Light-independent proto 25.9 56 0.0019 29.9 4.1 22 127-150 70-91 (314)
61 2wao_A Endoglucanase E; plant 24.9 2.2E+02 0.0074 25.7 8.0 18 217-234 211-229 (341)
62 2xdq_B Light-independent proto 24.8 1.2E+02 0.0041 29.6 6.5 55 209-277 78-133 (511)
63 3jug_A Beta-mannanase; TIM-bar 24.6 3.5E+02 0.012 24.8 9.4 67 203-276 118-186 (345)
64 3u7q_A Nitrogenase molybdenum- 23.4 2.3E+02 0.0079 27.5 8.3 70 206-289 130-201 (492)
65 1mio_A Nitrogenase molybdenum 22.9 1.4E+02 0.0048 29.5 6.6 73 206-292 121-198 (533)
66 3zq6_A Putative arsenical pump 22.6 64 0.0022 29.3 3.8 17 213-229 132-148 (324)
67 4ep4_A Crossover junction endo 22.4 1.1E+02 0.0038 25.5 5.0 33 195-227 39-71 (166)
68 3pdi_A Nitrogenase MOFE cofact 22.1 1.5E+02 0.005 28.9 6.5 72 206-292 109-185 (483)
69 2oze_A ORF delta'; para, walke 22.0 58 0.002 28.7 3.3 18 128-146 60-77 (298)
70 2o14_A Hypothetical protein YX 21.6 1.4E+02 0.0049 27.6 6.1 72 189-269 202-275 (375)
71 3tva_A Xylose isomerase domain 21.4 3.5E+02 0.012 23.1 8.4 64 201-274 98-161 (290)
72 3av0_A DNA double-strand break 21.3 3.2E+02 0.011 25.1 8.5 50 201-258 43-92 (386)
73 3cwq_A Para family chromosome 20.3 62 0.0021 27.2 3.0 25 122-149 18-42 (209)
No 1
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=3e-84 Score=628.70 Aligned_cols=305 Identities=31% Similarity=0.562 Sum_probs=275.6
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccccCCCCcccChhHHHHHHHHHhhHHHHHHHHHhcccCCCC
Q 020323 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPD 92 (327)
Q Consensus 13 ~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aag~~l~a~~~v~~~~~~~~~ 92 (327)
+++.+|++|+.++|++||+++||++|++.+.. ++...++ .+++++++++|+++++++|+++.|++.+++|+.
T Consensus 59 ~~~~~p~~a~~~~l~~vH~~~Yv~~l~~~~~~---~~~~~l~-~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~---- 130 (369)
T 1zz1_A 59 LTPIAAVAATDADILRAHSAAHLENMKRVSNL---PTGGDTG-DGITMMGNGGLEIARLSAGGAVELTRRVATGEL---- 130 (369)
T ss_dssp SEECCCCCCCHHHHHTTSCHHHHHHHHHHHHS---TTCEECS-SSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSC----
T ss_pred ceEeCCCcCCHHHHHHhccHHHHHHHHHhCcc---ccceecC-CCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 56789999999999999999999999886420 2223333 347899999999999999999999999998863
Q ss_pred CCceeeecCCCCCCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEcccccccccccccccCCCEEEEeeccCCCCC
Q 020323 93 PPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYP 172 (327)
Q Consensus 93 ~~~~fa~~rppGHHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f~~d~~Vl~iSiH~~~~yP 172 (327)
+++||++|||||||++++++|||+|||+||||+++++++|++||+|||||||||||||+|||+||+|+|+|+|++++||
T Consensus 131 -~~afa~~rppGHHA~~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP 209 (369)
T 1zz1_A 131 -SAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFP 209 (369)
T ss_dssp -SEEEECCSSCCTTCCTTCCBTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSS
T ss_pred -cceEEEecCCccCcCCCCCCCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCC
Confidence 4899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred -CCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHH
Q 020323 173 -GTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLA 251 (327)
Q Consensus 173 -~tg~~~e~G~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~ 251 (327)
+||..+|+|.|.|+|+++|||||+|++|++|+.+|+++++|++++|+||+||||||||+|.+||||+|+||+++|.+++
T Consensus 210 ~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~ 289 (369)
T 1zz1_A 210 PDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMA 289 (369)
T ss_dssp TTCCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHH
T ss_pred CCCCcccccCCCCCCceEEeeecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCCCCCCCCCCC--ccccCCccHHHHHHHHHHHHHhC
Q 020323 252 ANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNP--AILYEEPSAKVKQAIERVKHIHS 326 (327)
Q Consensus 252 ~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 326 (327)
+.|++++.++|+||++++|||||++++++++|..++++|+|.+...+|+.+. .....+..+.++++|+++|+.|.
T Consensus 290 ~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 366 (369)
T 1zz1_A 290 RRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLA 366 (369)
T ss_dssp HHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCCCCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGGG
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCCCCCchhHHHhhccccchHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999976421221110 11134668899999999988763
No 2
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=4.6e-79 Score=595.96 Aligned_cols=300 Identities=34% Similarity=0.563 Sum_probs=261.7
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHh------------HHHHhc-------CcccccCCCCcccC-hhHHHHHHHH
Q 020323 13 IELKNFSPASVDDIASVHARAYVSGLEKAM------------DRASQQ-------GIILIEGSGPTYAT-ATTFQESLAA 72 (327)
Q Consensus 13 ~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~------------~~~~~~-------~~~~~~~~~~~~~~-~~~~~~a~~a 72 (327)
+++.++++||.++|++||+++||+.+.... .....+ +...++ .+++++ +.+|++++++
T Consensus 82 ~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D--~Dt~~~~~~s~~aa~~a 159 (421)
T 2pqp_A 82 CECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVD--TDTIWNELHSSNAARWA 159 (421)
T ss_dssp SEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESS--SSCEECTTTHHHHHHHH
T ss_pred CeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhhhhhhcccccccchhhhhhhccccCcCCC--CCcccCCccHHHHHHHH
Confidence 678899999999999999999997542110 000000 111122 356666 5899999999
Q ss_pred HhhHHHHHHHHHhcccCCCCCCceeeecCCCCCCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEccccccccccc
Q 020323 73 AGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTND 152 (327)
Q Consensus 73 ag~~l~a~~~v~~~~~~~~~~~~~fa~~rppGHHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~ 152 (327)
+|+++.|+++|++|+. +++||++|||||||++++++|||+|||+||||++++++++++||+|||||||||||||+
T Consensus 160 aG~~~~a~~~v~~g~~-----~~afa~~rPpGHHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~ 234 (421)
T 2pqp_A 160 AGSVTDLAFKVASREL-----KNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQ 234 (421)
T ss_dssp HHHHHHHHHHHHTTSS-----SEEEECCSSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHH
T ss_pred HhHHHHHHHHHHcCcc-----ccceeeCCCCCCCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHH
Confidence 9999999999999864 58999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEeeccC---CCCCCCCCCCccCCCCCCCceeeccCCC----CCCHHHHHHHHHHHHHHHHHhcCCCEEEE
Q 020323 153 AFYDDPDIFFLSTHQD---GSYPGTGKIDEVGRGDGEGSTLNLPLPG----GSGDTAMRTVFHEVIVPCAQRFKPDLILV 225 (327)
Q Consensus 153 ~f~~d~~Vl~iSiH~~---~~yP~tg~~~e~G~~~g~g~~~nipL~~----g~~d~~y~~~~~~~l~p~~~~f~PdlIvv 225 (327)
+||+||+|+|+|+|++ .+||+||..+|+|.|.|+|+++|||||. +++|++|+.+|+++|.|++++|+||+|||
T Consensus 235 iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvv 314 (421)
T 2pqp_A 235 TFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLV 314 (421)
T ss_dssp HHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEE
T ss_pred HhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999996 3899999999999999999999999975 47999999999999999999999999999
Q ss_pred eccCCCCCCC--CCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCCCCCCCCCCC
Q 020323 226 SAGYDAHVLD--PLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNP 303 (327)
Q Consensus 226 ~aG~D~~~~D--plg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~ 303 (327)
|||||+|.+| |||+|+||+++|.++++.|++++ +||++++|||||++++|++++..++++|+|.+.. ++. +
T Consensus 315 saG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a----~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~--~l~-~ 387 (421)
T 2pqp_A 315 SAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLA----GGAVVLALEGGHDLTAICDASEACVAALLGNRVD--PLS-E 387 (421)
T ss_dssp EECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSG----GGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCC--GGG-C
T ss_pred eCCcccccccccccCCceeCHHHHHHHHHHHHHHc----CCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCC--CCc-c
Confidence 9999999987 99999999999999999988765 7899999999999999999999999999997632 221 1
Q ss_pred ccccCCccHHHHHHHHHHHHHhC
Q 020323 304 AILYEEPSAKVKQAIERVKHIHS 326 (327)
Q Consensus 304 ~~~~~~~~~~~~~~i~~~~~~~~ 326 (327)
......|+..+.+.|++++++|+
T Consensus 388 ~~~~~~p~~~a~~~i~~v~~~~~ 410 (421)
T 2pqp_A 388 EGWKQKPNLNAIRSLEAVIRVHS 410 (421)
T ss_dssp GGGGSCCCHHHHHHHHHHHHHHT
T ss_pred cccccccCHHHHHHHHHHHHHHH
Confidence 12346788899999999999875
No 3
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=7.8e-79 Score=582.94 Aligned_cols=264 Identities=30% Similarity=0.531 Sum_probs=241.8
Q ss_pred eeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhc----------------------------CcccccCCCCcccChhH
Q 020323 14 ELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQ----------------------------GIILIEGSGPTYATATT 65 (327)
Q Consensus 14 ~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 65 (327)
++.+|++|+.++|++||+++||++|++.+.++... +...++ .+|++++++
T Consensus 47 ~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d--~dt~~~~~~ 124 (341)
T 3q9b_A 47 DVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNA--AETAISPGT 124 (341)
T ss_dssp CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHHHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSB--TTCCBCTTH
T ss_pred ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhhhcccccccccccccccccccccccchhcccceeccC--CCCCcChhH
Confidence 57889999999999999999999999875443220 001122 478899999
Q ss_pred HHHHHHHHhhHHHHHHHHHhcccCCCCCCceeeecCCCCCCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEcccc
Q 020323 66 FQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVH 145 (327)
Q Consensus 66 ~~~a~~aag~~l~a~~~v~~~~~~~~~~~~~fa~~rppGHHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvH 145 (327)
|+++++++|+++.|+++|++|+ +++||++|||||||++++++|||+|||+||||++++++ |++||+|||||||
T Consensus 125 ~~aa~~aaG~~l~a~~~v~~g~------~~afal~rppGHHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD~DvH 197 (341)
T 3q9b_A 125 WEAALSSMASAIDGADLIAAGH------KAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFH 197 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------SEEEECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCC------CceEecCCCCCCCCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEecCCC
Confidence 9999999999999999999985 37999999999999999999999999999999999984 7999999999999
Q ss_pred cccccccccccCCCEEEEeeccCC--CCCC-CCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCE
Q 020323 146 HGNGTNDAFYDDPDIFFLSTHQDG--SYPG-TGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDL 222 (327)
Q Consensus 146 hGnGt~~~f~~d~~Vl~iSiH~~~--~yP~-tg~~~e~G~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~Pdl 222 (327)
||||||++||+||+|+|+|+|+++ +||+ ||..+|+|.|.|+++++|||||+|++|++|+.+|++++ |.+++|+||+
T Consensus 198 HGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ 276 (341)
T 3q9b_A 198 HGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEA 276 (341)
T ss_dssp CCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSC
T ss_pred CCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCCCCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCE
Confidence 999999999999999999999985 9999 99999999999999999999999999999999999875 7889999999
Q ss_pred EEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhC
Q 020323 223 ILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLG 292 (327)
Q Consensus 223 Ivv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g 292 (327)
||||||||+|.+||||+|+||+++|.++++.++++ .+|++++|||||++++|++++.+++++|.|
T Consensus 277 ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~-----~~~~v~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 277 IVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAAS-----GVPLLVVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp EEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTT-----SSCEEEEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred EEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHh-----CCCEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999988775 479999999999999999999999998864
No 4
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=6.3e-78 Score=579.74 Aligned_cols=263 Identities=32% Similarity=0.524 Sum_probs=241.6
Q ss_pred eeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhc----C-----------------------cccccCCCCcccChhHH
Q 020323 14 ELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQ----G-----------------------IILIEGSGPTYATATTF 66 (327)
Q Consensus 14 ~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~~~~----~-----------------------~~~~~~~~~~~~~~~~~ 66 (327)
++.+|++|+.++|++||+++||++|++...++... + ...++ .++++++++|
T Consensus 67 ~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d--~Dtpv~~~~~ 144 (362)
T 3men_A 67 PVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLAD--GSCPVGEHTW 144 (362)
T ss_dssp CEECCCCCCSHHHHTTSCHHHHHHHHHHHHHHHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCB--TTCCBCTTHH
T ss_pred eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhhhcccccccccccccccccccccccccccccccccC--CCCccchhHH
Confidence 67899999999999999999999999876443221 0 01122 4789999999
Q ss_pred HHHHHHHhhHHHHHHHHHhcccCCCCCCceeeecCCCCCCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEccccc
Q 020323 67 QESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHH 146 (327)
Q Consensus 67 ~~a~~aag~~l~a~~~v~~~~~~~~~~~~~fa~~rppGHHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHh 146 (327)
+++++++|+++.|++.|++|+ .++||++|||||||++++++|||+|||+||||++++++ .+||+||||||||
T Consensus 145 ~aa~~aaG~~l~aa~~v~~g~------~~afal~rPpGHHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHH 216 (362)
T 3men_A 145 RAAYWSAQSALAAAAAVRDGA------PAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLDTDMHH 216 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC------SEEEECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCC------CceEEeCCCCCCCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEeCcCCC
Confidence 999999999999999999885 37999999999999999999999999999999999876 5899999999999
Q ss_pred ccccccccccCCCEEEEeeccCC--CCCC-CCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEE
Q 020323 147 GNGTNDAFYDDPDIFFLSTHQDG--SYPG-TGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLI 223 (327)
Q Consensus 147 GnGt~~~f~~d~~Vl~iSiH~~~--~yP~-tg~~~e~G~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlI 223 (327)
|||||++||+||+|+|+|+|+++ +||+ ||..+|+|.+.|+|+++|||||+|++|++|+.+|++++ |.+++|+||+|
T Consensus 217 GnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlI 295 (362)
T 3men_A 217 GQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDAL 295 (362)
T ss_dssp CHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSGGGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEE
T ss_pred chhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCCCCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEE
Confidence 99999999999999999999985 8998 99999999999999999999999999999999999875 78999999999
Q ss_pred EEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhC
Q 020323 224 LVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLG 292 (327)
Q Consensus 224 vv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g 292 (327)
|||||||++.+||||+|+||+++|.++++.++++ .+|++++|||||++++|++++.+++++|.+
T Consensus 296 vvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~-----~~~~v~vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 296 VLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGAL-----RLPTVIVQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp EEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTT-----CCCEEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred EEECcccCcCCCCCCCccCCHHHHHHHHHHHHhh-----CCCEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988775 479999999999999999999999999976
No 5
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=2e-77 Score=588.78 Aligned_cols=301 Identities=33% Similarity=0.589 Sum_probs=260.3
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHH------------HHh------cCcccccCCCCcccChhHHHHHHHHHh
Q 020323 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDR------------ASQ------QGIILIEGSGPTYATATTFQESLAAAG 74 (327)
Q Consensus 13 ~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~------------~~~------~~~~~~~~~~~~~~~~~~~~~a~~aag 74 (327)
+++.+|++||.++|++||+++||+.++..... ... .+...++. +..|....++.++++++|
T Consensus 54 ~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-dt~~~~~~s~~aA~laaG 132 (413)
T 2vqm_A 54 CECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDS-DTIWNEVHSAGAARLAVG 132 (413)
T ss_dssp SEEECCCCCCHHHHTTTSCHHHHHHHHSCGGGGCC----HHHHHHHHHEEECTTSCEEECT-TSTHHHHHHHHHHHHHHH
T ss_pred CeEeCCCCCCHHHHHHhCCHHHHHHHhcCchhhhHhhhhhhccchhhhhhccccCCcCccC-CccccchhHHHHHHHHHH
Confidence 57889999999999999999999877532100 000 01112222 233444589999999999
Q ss_pred hHHHHHHHHHhcccCCCCCCceeeecCCCCCCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEccccccccccccc
Q 020323 75 AGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAF 154 (327)
Q Consensus 75 ~~l~a~~~v~~~~~~~~~~~~~fa~~rppGHHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f 154 (327)
+++.|+++|+.|+. +++||++|||||||++++++|||+|||+||||++++++++++||+|||||||||||||++|
T Consensus 133 ~~l~a~~~v~~g~~-----~~afa~vrppGHHA~~~~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF 207 (413)
T 2vqm_A 133 CVVELVFKVATGEL-----KNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAF 207 (413)
T ss_dssp HHHHHHHHHHTTSS-----SEEEECCCSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHHhcCCc-----cceeeecccccccCcCCCCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHH
Confidence 99999999999864 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeeccC---CCCCCCCCCCccCCCCCCCceeeccCCC----CCCHHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 020323 155 YDDPDIFFLSTHQD---GSYPGTGKIDEVGRGDGEGSTLNLPLPG----GSGDTAMRTVFHEVIVPCAQRFKPDLILVSA 227 (327)
Q Consensus 155 ~~d~~Vl~iSiH~~---~~yP~tg~~~e~G~~~g~g~~~nipL~~----g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~a 227 (327)
|+||+|+|+|+|++ ++||+||..+|+|.+.|.|+++|+|||. +++|++|+.+|+++|.|++++|+||+|||||
T Consensus 208 ~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~Pdlivvsa 287 (413)
T 2vqm_A 208 YSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSS 287 (413)
T ss_dssp TTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEE
T ss_pred hcCcccccccchhccCCCCCCCCCCHHHcCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999996 4789999999999999999999999874 5899999999999999999999999999999
Q ss_pred cCCCCCC--CCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCCCCCCCCCCCcc
Q 020323 228 GYDAHVL--DPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAI 305 (327)
Q Consensus 228 G~D~~~~--Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~ 305 (327)
|||+|.+ ||||+|+||+++|.++++++++++ +||++++|||||++++++++|..++++|+|.+.. ++. +..
T Consensus 288 G~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a----~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~--~~p-~~~ 360 (413)
T 2vqm_A 288 GFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLA----GGRIVLALEGGHDLTAICDASEACVSALLGNELD--PLP-EKV 360 (413)
T ss_dssp CCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSG----GGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCC--CCC-HHH
T ss_pred ChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhc----CCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCC--CCC-hhh
Confidence 9999998 669999999999999999887765 6899999999999999999999999999997532 221 222
Q ss_pred ccCCccHHHHHHHHHHHHHhC
Q 020323 306 LYEEPSAKVKQAIERVKHIHS 326 (327)
Q Consensus 306 ~~~~~~~~~~~~i~~~~~~~~ 326 (327)
....|+.+..+.|++++++|+
T Consensus 361 ~~~~p~~~~~~~~~~v~~~~~ 381 (413)
T 2vqm_A 361 LQQRPNANAVRSMEKVMEIHS 381 (413)
T ss_dssp HHCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCChHHHHHHHHHHHHHH
Confidence 345678889999999998764
No 6
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.5e-76 Score=569.52 Aligned_cols=267 Identities=21% Similarity=0.364 Sum_probs=242.2
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHh-----cCcccccCCCCcccChhHHHHHHHHHhhHHHHHHHHHhcc
Q 020323 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQ-----QGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAAS 87 (327)
Q Consensus 13 ~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~aag~~l~a~~~v~~~~ 87 (327)
+++.+|++||.++|++||+++||++|++....... .....++ .++++++++|+++++++|+++.|++.+++++
T Consensus 45 ~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~--~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~ 122 (367)
T 3max_A 45 MEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVG--EDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQ 122 (367)
T ss_dssp SEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGGCHHHHHHTTCS--SSSCCCTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccchhhhHhhhcCCC--CCCCCchHHHHHHHHHHHHHHHHHHHhcccC
Confidence 67889999999999999999999999875321100 0112233 3688999999999999999999999998764
Q ss_pred cCCCCCCceeeecCCCC-CCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEcccccccccccccccCCCEEEEeec
Q 020323 88 KNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTH 166 (327)
Q Consensus 88 ~~~~~~~~~fa~~rppG-HHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f~~d~~Vl~iSiH 166 (327)
.++|++|||| |||++++++|||+|||+||||+++++. .+||+|||||||||||||++||+||+|+|+|+|
T Consensus 123 -------~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H 193 (367)
T 3max_A 123 -------TDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY--HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFH 193 (367)
T ss_dssp -------CSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEE
T ss_pred -------cceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc--CCcEEEEecCCCCCchhhHHhcCCCCEEEEecc
Confidence 5799999999 999999999999999999999999864 489999999999999999999999999999999
Q ss_pred cCC-CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHH
Q 020323 167 QDG-SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTG 245 (327)
Q Consensus 167 ~~~-~yP~tg~~~e~G~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~ 245 (327)
+++ +||+||..+|+|.|.|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||+|+||++
T Consensus 194 ~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~ 273 (367)
T 3max_A 194 KYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVK 273 (367)
T ss_dssp ECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHH
T ss_pred cCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHH
Confidence 997 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCCC
Q 020323 246 TYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 295 (327)
Q Consensus 246 ~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~ 295 (327)
+|.++++.+++ +++|+++++||||++.++++||......++|.+.
T Consensus 274 g~~~~~~~~~~-----~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i 318 (367)
T 3max_A 274 GHAKCVEVVKT-----FNLPLLMLGGGGYTIRNVARCWTYETAVALDCEI 318 (367)
T ss_dssp HHHHHHHHHHT-----TCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHh-----cCCCEEEEeCCCCChhHHHHHHHHHHHHHhhccc
Confidence 99999887765 3689999999999999999999999999999754
No 7
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=7.4e-76 Score=569.89 Aligned_cols=267 Identities=25% Similarity=0.399 Sum_probs=241.7
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHH----hcCcccccCCCCcccChhHHHHHHHHHhhHHHHHHHHHhccc
Q 020323 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRAS----QQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASK 88 (327)
Q Consensus 13 ~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~aag~~l~a~~~v~~~~~ 88 (327)
+++.+|++||.++|++||+++||++|++...... ......+. .++++++++|+++++++|+++.|++++++|+
T Consensus 54 ~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~lg--~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~- 130 (388)
T 3ew8_A 54 MRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLG--YLCPATEGIFDYAAAIGGATITAAQCLIDGM- 130 (388)
T ss_dssp SEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC--------CCSCS--SSSCCCTTHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred CeEeCCCCCCHHHHHhhCCHHHHHHHHHhcccccccchhhhhccCC--CCCCCChhHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 5788999999999999999999999987643210 00111122 2678899999999999999999999999875
Q ss_pred CCCCCCceeeecCCCC-CCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEcccccccccccccccCCCEEEEeecc
Q 020323 89 NRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ 167 (327)
Q Consensus 89 ~~~~~~~~fa~~rppG-HHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f~~d~~Vl~iSiH~ 167 (327)
..+|++|||| |||++++++|||+|||+||||+++++ +.+||+|||||||||||||++||+||+|+|+|+|+
T Consensus 131 ------~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~~--~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~ 202 (388)
T 3ew8_A 131 ------CKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRR--KFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHK 202 (388)
T ss_dssp ------CSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTT--TCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEE
T ss_pred ------CceeeecCCcccceeecCCCCchhhhHHHHHHHHHHh--cCCeEEEEecCCCCChhHHHHhccCCCEEEEecCC
Confidence 3578899999 99999999999999999999999975 46899999999999999999999999999999999
Q ss_pred C--CCCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHH
Q 020323 168 D--GSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTG 245 (327)
Q Consensus 168 ~--~~yP~tg~~~e~G~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~ 245 (327)
+ ++||+||..+|+|.|.|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||+|||||++.+||||+|+||++
T Consensus 203 ~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~ 282 (388)
T 3ew8_A 203 FSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPV 282 (388)
T ss_dssp CCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHH
T ss_pred CCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHH
Confidence 7 49999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCCC
Q 020323 246 TYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 295 (327)
Q Consensus 246 ~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~ 295 (327)
+|.++++.++++ ..|+++++||||++.++++||..+...++|.+.
T Consensus 283 g~~~~~~~l~~~-----~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l 327 (388)
T 3ew8_A 283 GIGKCLKYILQW-----QLATLILGGGGYNLANTARCWTYLTGVILGKTL 327 (388)
T ss_dssp HHHHHHHHHHTT-----CCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhc-----CCCEEEEECCCCChhHHHHHHHHHHHHHcCCCC
Confidence 999999888754 479999999999999999999999999999763
No 8
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.2e-76 Score=571.39 Aligned_cols=266 Identities=23% Similarity=0.349 Sum_probs=240.5
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHH-----hcCcccccCCCCcccChhHHHHHHHHHhhHHHHHHHHHhcc
Q 020323 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRAS-----QQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAAS 87 (327)
Q Consensus 13 ~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~aag~~l~a~~~v~~~~ 87 (327)
+++.+|++||.++|++||+++||++|++...... +.+...++. ++++++++|+++++++|+++.|+++|+.|+
T Consensus 45 ~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~--Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~ 122 (376)
T 4a69_A 45 MIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGD--DCPVFPGLFEFCSRYTGASLQGATQLNNKI 122 (376)
T ss_dssp SEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGGHHHHHHHTCSS--SSCCCTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhhhhhhceeccCC--CCCcchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6788999999999999999999999987532110 001122332 678899999999999999999999999875
Q ss_pred cCCCCCCceeeecCCCC-CCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEcccccccccccccccCCCEEEEeec
Q 020323 88 KNRPDPPLGFALIRPPG-HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTH 166 (327)
Q Consensus 88 ~~~~~~~~~fa~~rppG-HHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f~~d~~Vl~iSiH 166 (327)
..+|+++||| |||++++++|||+|||+||||++++++ .+||+|||||||||||||++||+||+|+|+|+|
T Consensus 123 -------~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H 193 (376)
T 4a69_A 123 -------CDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKY--HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFH 193 (376)
T ss_dssp -------CSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEE
T ss_pred -------cceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHh--CCcEEEEeccCCCCcchhhHhcCCCCEEEEecc
Confidence 3466777776 999999999999999999999999875 389999999999999999999999999999999
Q ss_pred cCC--CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCH
Q 020323 167 QDG--SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTT 244 (327)
Q Consensus 167 ~~~--~yP~tg~~~e~G~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~ 244 (327)
+++ +||+||..+|+|.|.|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||+|+||+
T Consensus 194 ~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~ 273 (376)
T 4a69_A 194 KYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSI 273 (376)
T ss_dssp ECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCH
T ss_pred cCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCH
Confidence 987 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCC
Q 020323 245 GTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP 294 (327)
Q Consensus 245 ~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~ 294 (327)
++|.++++.++++ ++|+++++||||+++++++||......++|.+
T Consensus 274 ~g~~~~~~~l~~~-----~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~ 318 (376)
T 4a69_A 274 RGHGECVEYVKSF-----NIPLLVLGGGGYTVRNVARCWTYETSLLVEEA 318 (376)
T ss_dssp HHHHHHHHHHHTT-----CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHc-----CCCEEEEECCCCChhHHHHHHHHHHHHhcCCC
Confidence 9999999877654 68999999999999999999999999999975
No 9
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=1.9e-75 Score=567.99 Aligned_cols=266 Identities=26% Similarity=0.453 Sum_probs=240.2
Q ss_pred eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHH----HhcCcccccCCCCcccChhHHHHHHHHHhhHHHHHHHHHhccc
Q 020323 13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRA----SQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASK 88 (327)
Q Consensus 13 ~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~aag~~l~a~~~v~~~~~ 88 (327)
+++.+|++||.++|++||+++||++|++..... .......+ ++.++++++++|+++++++|+++.|++.+++|+
T Consensus 44 ~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~l-~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~- 121 (375)
T 1c3p_A 44 KELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKGAREKYNI-GGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN- 121 (375)
T ss_dssp GGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTTHHHHHCC-SSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCChHHhhcccc-CCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC-
Confidence 467889999999999999999999998864321 00011112 134788999999999999999999999999762
Q ss_pred CCCCCCceeeecCCCC--CCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEcccccccccccccccCCCEEEEeec
Q 020323 89 NRPDPPLGFALIRPPG--HHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTH 166 (327)
Q Consensus 89 ~~~~~~~~fa~~rppG--HHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f~~d~~Vl~iSiH 166 (327)
+++|||| |||++++++|||+|||+||||++++++ +.+||+|||||||||||||++||+||+|+|+|+|
T Consensus 122 ---------~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~-g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH 191 (375)
T 1c3p_A 122 ---------VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-GFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLH 191 (375)
T ss_dssp ---------EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-TCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEE
T ss_pred ---------ceeecCcccceeeeccCCCceeecHHHHHHHHHHHh-CCCeEEEEecCCCCCHHHHHHhccCCCEEEEecc
Confidence 3467887 999999999999999999999999875 6799999999999999999999999999999999
Q ss_pred cCCC--CCCCCCCCccC-CCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccC
Q 020323 167 QDGS--YPGTGKIDEVG-RGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFT 243 (327)
Q Consensus 167 ~~~~--yP~tg~~~e~G-~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls 243 (327)
+++. ||+||..+|+| .|.|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||
T Consensus 192 ~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt 271 (375)
T 1c3p_A 192 QSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLS 271 (375)
T ss_dssp ECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBC
T ss_pred cCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccC
Confidence 9874 69999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCCC
Q 020323 244 TGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPS 295 (327)
Q Consensus 244 ~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~ 295 (327)
+++|.++++.+++++ .|++++|||||++.+++++|..+++.|+|.+.
T Consensus 272 ~~g~~~~~~~l~~~a-----~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~ 318 (375)
T 1c3p_A 272 NVAFLKAFNIVREVF-----GEGVYLGGGGYHPYALARAWTLIWCELSGREV 318 (375)
T ss_dssp HHHHHHHHHHHHHHH-----CSCEEECCCCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhc-----cceEEEECCCCChHHHHHHHHHHHHHHcCCCC
Confidence 999999999999987 36999999999999999999999999999763
No 10
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=80.29 E-value=12 Score=31.04 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=34.0
Q ss_pred eccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHh
Q 020323 191 NLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDL 261 (327)
Q Consensus 191 nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~ 261 (327)
|.....+++...+...+++ .+...+||+|++..|.. | +..+.+.|..-.+.+.+..++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~ 108 (200)
T 4h08_A 50 RLSNSKSVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKY 108 (200)
T ss_dssp EEEESCCTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhh
Confidence 4444445555555555543 44678999999999973 2 2356676654433333333333
No 11
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=66.74 E-value=24 Score=28.70 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=23.7
Q ss_pred HHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 020323 213 PCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAK 259 (327)
Q Consensus 213 p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~ 259 (327)
..+..++||+||+..|. |... ..+.+.|..-.+.+.+.++
T Consensus 56 ~~~~~~~pd~Vii~~G~ND~~~-------~~~~~~~~~~l~~li~~~~ 96 (190)
T 1ivn_A 56 ALLKQHQPRWVLVELGGNDGLR-------GFQPQQTEQTLRQILQDVK 96 (190)
T ss_dssp HHHHHHCCSEEEEECCTTTTSS-------SCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEeecccccc-------CCCHHHHHHHHHHHHHHHH
Confidence 34556799999999997 4432 3455665443333333333
No 12
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=60.28 E-value=27 Score=28.02 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=31.6
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHH
Q 020323 190 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKD 260 (327)
Q Consensus 190 ~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~ 260 (327)
+|...+..+ -...+..++. .+..++||+|++..|. |... ..+.+.|..-.+.+.+.+++
T Consensus 42 ~n~g~~G~~-~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~ 101 (185)
T 3hp4_A 42 INASISGET-SGGALRRLDA----LLEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQA 101 (185)
T ss_dssp EECCCTTCC-HHHHHHHHHH----HHHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHH
T ss_pred EECCcCCcc-HHHHHHHHHH----HHhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHH
Confidence 344443333 2344444443 4456899999999997 5533 23455555443333333333
No 13
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=55.98 E-value=17 Score=30.50 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=23.9
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccC-CCCCC
Q 020323 190 LNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVL 234 (327)
Q Consensus 190 ~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~-D~~~~ 234 (327)
+|..+...++ ...+.-|++. +..++||+||+..|. |...+
T Consensus 54 iN~Gi~G~tt-~~~l~r~~~~----v~~~~Pd~vvi~~G~ND~~~~ 94 (209)
T 4hf7_A 54 IGRGISGQTS-YQFLLRFRED----VINLSPALVVINAGTNDVAEN 94 (209)
T ss_dssp EEEECTTCCH-HHHHHHHHHH----TGGGCCSEEEECCCHHHHTTS
T ss_pred EEeccCcccH-HHHHHHHHHH----HHhcCCCEEEEEeCCCcCccc
Confidence 4554443333 3444444443 335799999999998 66543
No 14
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=54.66 E-value=23 Score=31.05 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=18.1
Q ss_pred cCCCEEEEeccC-CCCCCCCCCC
Q 020323 218 FKPDLILVSAGY-DAHVLDPLAS 239 (327)
Q Consensus 218 f~PdlIvv~aG~-D~~~~Dplg~ 239 (327)
.+||+|+|..|. |.....|.+.
T Consensus 87 ~~pd~V~I~~G~ND~~~~~~~~~ 109 (274)
T 3bzw_A 87 GEVDAILVFMGTNDYNSSVPIGE 109 (274)
T ss_dssp TTCCEEEEECCHHHHHTTCCCCC
T ss_pred CCCCEEEEEEecccCcccCCCcc
Confidence 799999999999 7777666654
No 15
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=52.99 E-value=15 Score=30.64 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=25.5
Q ss_pred cCCCEEEEeccC-CCCC-CCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 020323 218 FKPDLILVSAGY-DAHV-LDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFF 269 (327)
Q Consensus 218 f~PdlIvv~aG~-D~~~-~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~v 269 (327)
.+||+|+++.|. |... .+ ....+.+.|..-.+.+.+..++. .+++++
T Consensus 87 ~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~~l~~li~~l~~~--~~iil~ 135 (218)
T 1vjg_A 87 EYNSLVVFSFGLNDTTLENG---KPRVSIAETIKNTREILTQAKKL--YPVLMI 135 (218)
T ss_dssp TSEEEEEEECCHHHHCEETT---EESSCHHHHHHHHHHHHHHHHHH--SCEEEE
T ss_pred CCCCEEEEEecCCcchhhcc---cccCCHHHHHHHHHHHHHHHHHh--CcEEEE
Confidence 599999999998 5541 11 12345565543333333333333 466655
No 16
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=49.59 E-value=35 Score=27.73 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=36.1
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEE
Q 020323 189 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCV 267 (327)
Q Consensus 189 ~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v 267 (327)
.+|..++..+. ..++..+++ .+..++||+|++..|. |...... ..+.+.|..-.+.+.+.+++ .+.+++
T Consensus 49 v~n~g~~G~~~-~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~~~----~~~~~~~~~~~~~~i~~~~~-~~~~vi 118 (204)
T 3p94_A 49 FVDRGISGQTT-SEMLVRFRQ----DVINLKPKAVVILAGINDIAHNNG----VIALENVFGNLVSMAELAKA-NHIKVI 118 (204)
T ss_dssp EEEEECTTCCH-HHHHHHHHH----HTGGGCEEEEEEECCHHHHTTTTS----CCCHHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred eEEcccCcccH-HHHHHHHHH----HHHhCCCCEEEEEeecCccccccC----CCCHHHHHHHHHHHHHHHHh-CCCeEE
Confidence 34555544433 334443332 3445899999999998 5554321 24566665433333333333 233444
Q ss_pred EE
Q 020323 268 FF 269 (327)
Q Consensus 268 ~v 269 (327)
++
T Consensus 119 l~ 120 (204)
T 3p94_A 119 FC 120 (204)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 17
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=49.28 E-value=19 Score=32.41 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCCCCC
Q 020323 203 MRTVFHEVIVPCAQRFKPDLILVSAGYDAHV 233 (327)
Q Consensus 203 y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~ 233 (327)
+...+.+.|..++++++||+||.-.|.|.|.
T Consensus 132 ~~~~l~~~l~~~ir~~~PdvV~t~~~~d~Hp 162 (273)
T 3dff_A 132 LVGEVADDIRSIIDEFDPTLVVTCAAIGEHP 162 (273)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCCCCCCh
Confidence 4556666677899999999999988888765
No 18
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=49.22 E-value=69 Score=26.97 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=26.0
Q ss_pred HHHHhcCC-CEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHH
Q 020323 213 PCAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKD 260 (327)
Q Consensus 213 p~~~~f~P-dlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~ 260 (327)
..+..++| |+|||..|. |... ....+.+.|..-.+.+.+.+++
T Consensus 94 ~~l~~~~p~d~VvI~~GtND~~~-----~~~~~~~~~~~~l~~li~~ir~ 138 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTNDIKP-----VHGGRAEAAVSGMRRLAQIVET 138 (232)
T ss_dssp HHHHHHCSCSEEEEECCTTTTSG-----GGTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCEEEEEeccCCCcc-----ccCCCHHHHHHHHHHHHHHHHH
Confidence 34567899 999999997 4433 2234666665444444434444
No 19
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=48.43 E-value=89 Score=25.82 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=36.0
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHh-cCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEE
Q 020323 190 LNLPLPGGSGDTAMRTVFHEVIVPCAQR-FKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCV 267 (327)
Q Consensus 190 ~nipL~~g~~d~~y~~~~~~~l~p~~~~-f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v 267 (327)
+|..+...+ -...+..++. .+.. .+||+|++..|. |.... +.-..+.+.|..-.+.+.+.+++. +.+++
T Consensus 47 ~n~g~~G~~-~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~---~~~~~~~~~~~~~l~~~i~~~~~~-~~~vi 117 (240)
T 3mil_A 47 LQRGFKGYT-SRWALKILPE----ILKHESNIVMATIFLGANDACSA---GPQSVPLPEFIDNIRQMVSLMKSY-HIRPI 117 (240)
T ss_dssp EEEECTTCC-HHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSS---STTCCCHHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred EecCcCccc-HHHHHHHHHH----HhcccCCCCEEEEEeecCcCCcc---CCCCCCHHHHHHHHHHHHHHHHHc-CCeEE
Confidence 344443333 2344444443 3444 699999999998 55432 123456666654333333333332 33444
Q ss_pred EE
Q 020323 268 FF 269 (327)
Q Consensus 268 ~v 269 (327)
++
T Consensus 118 l~ 119 (240)
T 3mil_A 118 II 119 (240)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 20
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=47.58 E-value=22 Score=31.88 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCCCCC
Q 020323 203 MRTVFHEVIVPCAQRFKPDLILVSAGYDAHV 233 (327)
Q Consensus 203 y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~ 233 (327)
+...+.+.|..++++++||+|+.-.|.|.|.
T Consensus 129 ~~~~~~~~l~~~ir~~~PdvV~t~~~~d~Hp 159 (270)
T 3dfi_A 129 LVAAIREDIESMIAECDPTLVLTCVAIGKHP 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEeCCCCCCCh
Confidence 4455666677899999999999988888765
No 21
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=47.47 E-value=15 Score=30.06 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=30.3
Q ss_pred HHHhcCCCEEEEeccC-CCCCCCCCC---CcccCHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 020323 214 CAQRFKPDLILVSAGY-DAHVLDPLA---SLQFTTGTYYMLAANIKQLAKDLCGSRCVFF 269 (327)
Q Consensus 214 ~~~~f~PdlIvv~aG~-D~~~~Dplg---~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~v 269 (327)
.+...+||+|++..|. |.....+-+ ....+.+.|..-.+.+.+.+++. +.+++++
T Consensus 78 ~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~vil~ 136 (216)
T 3rjt_A 78 DVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPR-VREMFLL 136 (216)
T ss_dssp HTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGG-SSEEEEE
T ss_pred HHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhc-CCeEEEE
Confidence 3456799999999998 554321111 12455666655444444444443 3344444
No 22
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=47.33 E-value=51 Score=27.01 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=22.5
Q ss_pred HHHhcCC-CEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHH
Q 020323 214 CAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANI 254 (327)
Q Consensus 214 ~~~~f~P-dlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l 254 (327)
.+..++| |+|++..|. |... ....+.+.|..-.+.+
T Consensus 77 ~l~~~~p~d~vvi~~G~ND~~~-----~~~~~~~~~~~~l~~l 114 (216)
T 2q0q_A 77 CLATHLPLDLVIIMLGTNDTKA-----YFRRTPLDIALGMSVL 114 (216)
T ss_dssp HHHHHCSCSEEEEECCTGGGSG-----GGCCCHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEEEecCcccch-----hcCCCHHHHHHHHHHH
Confidence 4566788 999999998 5432 1345666665433333
No 23
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=46.50 E-value=67 Score=29.05 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 020323 202 AMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 275 (327)
Q Consensus 202 ~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~ 275 (327)
.+...|.+.+ |.+++|+-..||+-.|-.+..++ +....+.+.+..+... +.++++|-+||-.
T Consensus 9 ~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~---------~~~~~~~~~i~~l~~~--G~~vVlVhGgG~~ 70 (300)
T 2buf_A 9 QVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESE---------ELKAGFARDVVLMKAV--GINPVVVHGGGPQ 70 (300)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSS---------HHHHHHHHHHHHHHHT--TCEEEEEECCCHH
T ss_pred HHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCc---------hHHHHHHHHHHHHHHC--CCeEEEEECCcHH
Confidence 5677788765 89999999999999998887643 2455566666655432 3467888888653
No 24
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=44.43 E-value=71 Score=25.34 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred HHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHH
Q 020323 215 AQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYM 249 (327)
Q Consensus 215 ~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~ 249 (327)
+...+||+||++.|. |... ....+.+.|..
T Consensus 63 ~~~~~pd~vvi~~G~ND~~~-----~~~~~~~~~~~ 93 (195)
T 1yzf_A 63 VLIEKPDEVVIFFGANDASL-----DRNITVATFRE 93 (195)
T ss_dssp TGGGCCSEEEEECCTTTTCT-----TSCCCHHHHHH
T ss_pred hhhcCCCEEEEEeeccccCc-----cCCCCHHHHHH
Confidence 355899999999997 4331 12456666644
No 25
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=43.36 E-value=19 Score=30.54 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=15.4
Q ss_pred HHHHHcCCCeEEEEEccccccc
Q 020323 127 YAQRAHGLKRVFIIDFDVHHGN 148 (327)
Q Consensus 127 ~l~~~~~~~RV~iiD~DvHhGn 148 (327)
+.+.+.| +||++||+|..+|+
T Consensus 25 ~~la~~g-~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 25 VALGDRG-RKVLAVDGDLTMAN 45 (237)
T ss_dssp HHHHHTT-CCEEEEECCTTSCC
T ss_pred HHHHhcC-CeEEEEeCCCCCCC
Confidence 3333444 69999999998776
No 26
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=43.34 E-value=34 Score=28.87 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=13.7
Q ss_pred HHhcCCCEEEEeccC-CC
Q 020323 215 AQRFKPDLILVSAGY-DA 231 (327)
Q Consensus 215 ~~~f~PdlIvv~aG~-D~ 231 (327)
+...+||+||+..|. |.
T Consensus 89 l~~~~pd~vvi~~G~ND~ 106 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNH 106 (232)
T ss_dssp TTTCCCSEEEEECCTTCT
T ss_pred cccCCCCEEEEEeecCCC
Confidence 345799999999998 44
No 27
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=41.92 E-value=21 Score=30.76 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.0
Q ss_pred HHHcCCCeEEEEEcccccccc
Q 020323 129 QRAHGLKRVFIIDFDVHHGNG 149 (327)
Q Consensus 129 ~~~~~~~RV~iiD~DvHhGnG 149 (327)
+.+.| +||++||+|..+++=
T Consensus 27 la~~g-~~VlliD~D~~~~~~ 46 (260)
T 3q9l_A 27 LAQKG-KKTVVIDFAIGLRNL 46 (260)
T ss_dssp HHHTT-CCEEEEECCCSSCCH
T ss_pred HHhCC-CcEEEEECCCCCCCh
Confidence 33444 599999999987773
No 28
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=41.89 E-value=21 Score=31.00 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=15.5
Q ss_pred HHHHHcCCCeEEEEEccccccc
Q 020323 127 YAQRAHGLKRVFIIDFDVHHGN 148 (327)
Q Consensus 127 ~l~~~~~~~RV~iiD~DvHhGn 148 (327)
+++.+.| +||++||+|..+|+
T Consensus 25 ~~la~~g-~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 25 VALAQLG-HDVTIVDADITMAN 45 (263)
T ss_dssp HHHHHTT-CCEEEEECCCSSSS
T ss_pred HHHHhCC-CcEEEEECCCCCCC
Confidence 3334444 69999999998876
No 29
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=41.66 E-value=40 Score=32.33 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCC
Q 020323 201 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGY 274 (327)
Q Consensus 201 ~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY 274 (327)
..+...|.+.+ |.+++|+-..|||-.|-.+..++ ....+.+.|..+... +.++++|-+||-
T Consensus 25 ~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~----------~~~~~~~~i~~l~~~--g~~vvlVhggg~ 85 (456)
T 3d2m_A 25 DSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGG----------TLNKLAADIGLLSQL--GIRLVLIHGAYH 85 (456)
T ss_dssp CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTST----------HHHHHHHHHHHHHHT--TCEEEEEECCHH
T ss_pred hHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCc----------hHHHHHHHHHHHHHC--CCeEEEEeCCcH
Confidence 35777888874 89999999999999998876532 244556666555432 346888888874
No 30
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=41.48 E-value=16 Score=31.04 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=14.3
Q ss_pred HHHHHcCCCeEEEEEccccccc
Q 020323 127 YAQRAHGLKRVFIIDFDVHHGN 148 (327)
Q Consensus 127 ~l~~~~~~~RV~iiD~DvHhGn 148 (327)
+.+.+.| +||++||+|.. |+
T Consensus 22 ~~la~~g-~~VlliD~D~~-~~ 41 (254)
T 3kjh_A 22 KIMASDY-DKIYAVDGDPD-SC 41 (254)
T ss_dssp HHHTTTC-SCEEEEEECTT-SC
T ss_pred HHHHHCC-CeEEEEeCCCC-cC
Confidence 3334445 79999999995 55
No 31
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=38.03 E-value=74 Score=28.35 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 020323 202 AMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 275 (327)
Q Consensus 202 ~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~ 275 (327)
.+...|++.+ |.+++|+-..||+-.|-.+..+ .+.+..+.+.+..+... +.++++|-+||-.
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vVlVhGgG~~ 65 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQ---------ENAKKAFIQDIILLKYT--GIKPIIVHGGGPA 65 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHS---------HHHHHHHHHHHHHHHHT--TCEEEEEECCSHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCC---------hhHHHHHHHHHHHHHHC--CCcEEEEECCcHH
Confidence 4566777764 8999999999999998766543 23456666666665432 3467888888754
No 32
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=37.74 E-value=66 Score=30.85 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHH
Q 020323 207 FHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVAD 285 (327)
Q Consensus 207 ~~~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~ 285 (327)
|.+.|..+.++|+|++|+|...+ -...+|. +..+.+.+. .++ +.|++.+--.||... ..++...
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdD----------i~~v~~~~~---~~~-~ipVi~v~~~Gf~~~-~~~G~~~ 149 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMD----------LEGLAPKLE---AEI-GIPIVVARANGLDYA-FTQGEDT 149 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCC----------HHHHHHHHH---HHH-SSCEEEEECCTTTCC-TTHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhC----------HHHHHHHHh---hcc-CCcEEEEecCCcccc-HHHHHHH
Confidence 45666778889999987776654 6666664 444433332 222 578999988898743 4456666
Q ss_pred HHHHHhC
Q 020323 286 SFRAFLG 292 (327)
Q Consensus 286 ~~~~l~g 292 (327)
.+.++..
T Consensus 150 a~~al~~ 156 (460)
T 2xdq_A 150 VLAAMAA 156 (460)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666654
No 33
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=37.60 E-value=25 Score=30.52 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=16.5
Q ss_pred HHHHcCCCeEEEEEccccccccccccc
Q 020323 128 AQRAHGLKRVFIIDFDVHHGNGTNDAF 154 (327)
Q Consensus 128 l~~~~~~~RV~iiD~DvHhGnGt~~~f 154 (327)
++.+.| +||++||+|. +++.+...+
T Consensus 24 ~la~~G-~~VlliD~D~-q~~~~~~~~ 48 (269)
T 1cp2_A 24 GLHAMG-KTIMVVGCDP-KADSTRLLL 48 (269)
T ss_dssp HHHTTT-CCEEEEEECT-TSCSSHHHH
T ss_pred HHHHCC-CcEEEEcCCC-CCCHHHHhc
Confidence 333444 5999999996 455665554
No 34
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=36.91 E-value=34 Score=28.70 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=28.6
Q ss_pred cCCCEEEEeccC-CCCCCCCCCCcc-cCH-HHHHHHHHHHHHHHHHhcCCcEEEE
Q 020323 218 FKPDLILVSAGY-DAHVLDPLASLQ-FTT-GTYYMLAANIKQLAKDLCGSRCVFF 269 (327)
Q Consensus 218 f~PdlIvv~aG~-D~~~~Dplg~~~-ls~-~~~~~~~~~l~~~a~~~~~g~~v~v 269 (327)
.+||+|++..|. |...+-|.+.+. .+. .....+.+.+..+-...-+.+++++
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~ 135 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFI 135 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 499999999998 766655655543 122 2223344444444333223456554
No 35
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=36.07 E-value=32 Score=29.20 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=17.4
Q ss_pred HHHHHcCCCeEEEEEccccccccccc
Q 020323 127 YAQRAHGLKRVFIIDFDVHHGNGTND 152 (327)
Q Consensus 127 ~l~~~~~~~RV~iiD~DvHhGnGt~~ 152 (327)
+.+.+..-+||++||+|..+|+=+..
T Consensus 27 ~~la~~~g~~VlliD~D~~~~~l~~~ 52 (245)
T 3ea0_A 27 FALSQEPDIHVLAVDISLPFGDLDMY 52 (245)
T ss_dssp HHHTTSTTCCEEEEECCTTTCCGGGG
T ss_pred HHHHhCcCCCEEEEECCCCCCCHHHH
Confidence 33444312699999999988875433
No 36
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=35.06 E-value=64 Score=26.75 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHH
Q 020323 201 TAMRTVFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQ 256 (327)
Q Consensus 201 ~~y~~~~~~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~ 256 (327)
..++..++. .+...+||+|++..|. |...+. ..+.+.|..+.+.+++
T Consensus 69 ~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~~~~-----~~~~~~l~~li~~i~~ 116 (215)
T 2vpt_A 69 PQIASNINN----WLNTHNPDVVFLWIGGNDLLLNG-----NLNATGLSNLIDQIFT 116 (215)
T ss_dssp HHHHHHHHH----HHHHHCCSEEEEECCHHHHHHHC-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HhhccCCCEEEEEccccccCCCC-----ChhHHHHHHHHHHHHH
Confidence 344444443 3446799999999998 554322 2345667666666554
No 37
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=34.94 E-value=55 Score=29.55 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 020323 199 GDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 275 (327)
Q Consensus 199 ~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~ 275 (327)
....+...|.+.+ |.+++|+-..||+-.|-.+..+ .+....+.+.+..+... +.++++|-+||-.
T Consensus 5 ~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vViVhGgG~~ 69 (299)
T 2ap9_A 5 PTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTD---------DTLRRAFAADMAFLRNC--GIHPVVVHGGGPQ 69 (299)
T ss_dssp CHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHS---------HHHHHHHHHHHHHHHTT--TCEEEEEECCSHH
T ss_pred ChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCC---------chHHHHHHHHHHHHHHC--CCcEEEEECCcHH
Confidence 3567778888875 8999999999999988766543 23444556666555421 3467888888754
No 38
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=34.18 E-value=33 Score=30.30 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=16.0
Q ss_pred HHHcCCCeEEEEEccccccccccccc
Q 020323 129 QRAHGLKRVFIIDFDVHHGNGTNDAF 154 (327)
Q Consensus 129 ~~~~~~~RV~iiD~DvHhGnGt~~~f 154 (327)
+.+.| +||++||+|.. ++.+...+
T Consensus 26 La~~G-~rVlliD~D~q-~~~~~~~~ 49 (289)
T 2afh_E 26 LAEMG-KKVMIVGCDPK-ADSTRLIL 49 (289)
T ss_dssp HHHTT-CCEEEEEECSS-SCSSHHHH
T ss_pred HHHCC-CeEEEEecCCC-CCHHHHhc
Confidence 33344 59999999975 55555544
No 39
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=34.03 E-value=26 Score=32.61 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=16.9
Q ss_pred HHcCCCeEEEEEccccccccccccc
Q 020323 130 RAHGLKRVFIIDFDVHHGNGTNDAF 154 (327)
Q Consensus 130 ~~~~~~RV~iiD~DvHhGnGt~~~f 154 (327)
.+.| +||++||+|.. ++.+..++
T Consensus 27 A~~G-~rVLlID~D~q-~~~~~~l~ 49 (361)
T 3pg5_A 27 ALQG-KRVLYVDCDPQ-CNATQLML 49 (361)
T ss_dssp HHTT-CCEEEEECCTT-CTTHHHHS
T ss_pred HhCC-CcEEEEEcCCC-CChhhhhc
Confidence 3344 69999999977 77776654
No 40
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=34.03 E-value=27 Score=31.01 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCCeEEEEEccccccccc
Q 020323 122 AIAARYAQRAHGLKRVFIIDFDVHHGNGT 150 (327)
Q Consensus 122 Aiaa~~l~~~~~~~RV~iiD~DvHhGnGt 150 (327)
|+.+.+++.+.| +||++||+|..+|+-+
T Consensus 22 a~nLA~~La~~G-~~VlliD~D~~q~~l~ 49 (286)
T 2xj4_A 22 AVHLVTALLYGG-AKVAVIDLDLRQRTSA 49 (286)
T ss_dssp HHHHHHHHHHTT-CCEEEEECCTTTCHHH
T ss_pred HHHHHHHHHHCC-CcEEEEECCCCCCCHH
Confidence 333333334444 5999999999777643
No 41
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=33.72 E-value=51 Score=29.81 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 020323 201 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 275 (327)
Q Consensus 201 ~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~ 275 (327)
..+...|.+.+ |.+++|+-..||+-.|--+..+ .+....+.+.+..+... +.++++|.+||-.
T Consensus 18 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~---------~~~~~~~~~~i~~l~~~--G~~vViVhGgG~~ 80 (298)
T 2rd5_A 18 DYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTS---------PELKSSVVSDLVLLACV--GLRPILVHGGGPD 80 (298)
T ss_dssp CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHC---------HHHHHHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred HHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCC---------hhHHHHHHHHHHHHHHC--CCCEEEEECCcHH
Confidence 35777888765 8999999999999998766543 23445666666655432 3467888888653
No 42
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=32.09 E-value=1.1e+02 Score=25.50 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=13.3
Q ss_pred HhcCCCEEEEeccC-CC
Q 020323 216 QRFKPDLILVSAGY-DA 231 (327)
Q Consensus 216 ~~f~PdlIvv~aG~-D~ 231 (327)
..++||+|+|..|. |.
T Consensus 91 ~~~~pd~vvi~~G~ND~ 107 (229)
T 1fxw_F 91 ENIKPKVIVVWVGTNNH 107 (229)
T ss_dssp SSCCCSEEEEECCTTCT
T ss_pred ccCCCCEEEEEEecCCC
Confidence 45799999999998 44
No 43
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=30.07 E-value=35 Score=29.61 Aligned_cols=20 Identities=45% Similarity=0.755 Sum_probs=14.0
Q ss_pred HHHcCCCeEEEEEccccccccc
Q 020323 129 QRAHGLKRVFIIDFDVHHGNGT 150 (327)
Q Consensus 129 ~~~~~~~RV~iiD~DvHhGnGt 150 (327)
+.+.| +||++||+|. +|+-+
T Consensus 31 la~~g-~~VlliD~D~-~~~~~ 50 (257)
T 1wcv_1 31 LARLG-KRVLLVDLDP-QGNAT 50 (257)
T ss_dssp HHHTT-CCEEEEECCT-TCHHH
T ss_pred HHHCC-CCEEEEECCC-CcCHH
Confidence 33344 6999999998 46643
No 44
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=29.80 E-value=37 Score=30.54 Aligned_cols=14 Identities=50% Similarity=0.873 Sum_probs=12.3
Q ss_pred CeEEEEEccccccc
Q 020323 135 KRVFIIDFDVHHGN 148 (327)
Q Consensus 135 ~RV~iiD~DvHhGn 148 (327)
+||++||.|...++
T Consensus 122 ~rVLLID~D~~~~~ 135 (286)
T 3la6_A 122 KRVLLIDCDMRKGY 135 (286)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEeccCCCCC
Confidence 69999999998764
No 45
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=29.01 E-value=2.6e+02 Score=25.04 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCC
Q 020323 201 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGY 274 (327)
Q Consensus 201 ~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY 274 (327)
+++..+|++++ ..+.+.+||+||++ | |... .-.-+.+.+..+.+.+.++.. .+.|++++ -|--
T Consensus 23 ~~~~~~~~~~~-~~~~~~~~D~vl~~-G-Dl~d-----~~~~~~~~~~~~~~~l~~l~~--~~~~v~~v-~GNH 85 (333)
T 1ii7_A 23 EEFAEAFKNAL-EIAVQENVDFILIA-G-DLFH-----SSRPSPGTLKKAIALLQIPKE--HSIPVFAI-EGNH 85 (333)
T ss_dssp HHHHHHHHHHH-HHHHHTTCSEEEEE-S-CSBS-----SSSCCHHHHHHHHHHHHHHHT--TTCCEEEE-CCTT
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEEC-C-CcCC-----CCCCCHHHHHHHHHHHHHHHH--CCCcEEEe-CCcC
Confidence 35566777765 46778899987764 4 3321 112244555555555555542 13455544 4443
No 46
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=28.80 E-value=1.6e+02 Score=26.71 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=14.7
Q ss_pred hcCCCEEEEeccC-CCCCC
Q 020323 217 RFKPDLILVSAGY-DAHVL 234 (327)
Q Consensus 217 ~f~PdlIvv~aG~-D~~~~ 234 (327)
.++||+|||..|. |....
T Consensus 223 ~~~Pd~VvI~lG~ND~~~~ 241 (347)
T 2waa_A 223 RYQPDLIISAIGTNDFSPG 241 (347)
T ss_dssp GCCCSEEEECCCHHHHSSS
T ss_pred cCCCCEEEEEccccCCCCC
Confidence 5799999999998 66443
No 47
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=28.60 E-value=69 Score=31.01 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHh---cCCcEEEEeCCCCCchhHHH
Q 020323 206 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDL---CGSRCVFFLEGGYNLNSLSY 281 (327)
Q Consensus 206 ~~~~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~---~~g~~v~vleGGY~~~~l~~ 281 (327)
-+.+.|..+.++|+|++|+|...+ -...+|. +..+.+. +..++ .+.|++.+--.||... -..
T Consensus 79 ~L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdD----------i~~v~~~---~~~~~~~~~~~pVi~v~tpgf~gs-~~~ 144 (458)
T 3pdi_B 79 NVVEALKTICERQNPSVIGLLTTGLSETQGCD----------LHTALHE---FRTQYEEYKDVPIVPVNTPDFSGC-FES 144 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECHHHHTTCTT----------HHHHHHH---TTTSCCSCSCSCEEEECCCTTSSC-HHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcCC----------HHHHHHH---HHHhccccCCCeEEEeeCCCcCCc-hhH
Confidence 344555567788999988877665 5556663 3333322 22221 2457888888999753 344
Q ss_pred HHHHHHHHHh
Q 020323 282 SVADSFRAFL 291 (327)
Q Consensus 282 ~~~~~~~~l~ 291 (327)
++...+++++
T Consensus 145 G~~~a~~al~ 154 (458)
T 3pdi_B 145 GFAAAVKAIV 154 (458)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 48
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=28.45 E-value=2.3e+02 Score=25.39 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccCC-CCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 020323 201 TAMRTVFHEVIVPCAQRFKPDLILVSAGYD-AHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 275 (327)
Q Consensus 201 ~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D-~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~ 275 (327)
++...+|++++ ..+++.+||+||+ +| | ... .-..+.+.+..+.+.+.++... .|++ +.-|--+
T Consensus 44 ~~~~~~l~~lv-~~~~~~~~D~vli-aG-D~l~d-----~~~~~~~~~~~~~~~l~~L~~~---~pv~-~i~GNHD 107 (336)
T 2q8u_A 44 EELKKALDKVV-EEAEKREVDLILL-TG-DLLHS-----RNNPSVVALHDLLDYLKRMMRT---APVV-VLPGNHD 107 (336)
T ss_dssp HHHHHHHHHHH-HHHHHHTCSEEEE-ES-CSBSC-----SSCCCHHHHHHHHHHHHHHHHH---SCEE-ECCC---
T ss_pred HHHHHHHHHHH-HHHHHhCCCEEEE-CC-ccccC-----CCCCCHHHHHHHHHHHHHHHhc---CCEE-EECCCCC
Confidence 45566777765 4677789997776 44 3 221 1223445555555666666532 3544 4455443
No 49
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=28.07 E-value=46 Score=29.60 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEEccccccccc
Q 020323 121 VAIAARYAQRAHGLKRVFIIDFDVHHGNGT 150 (327)
Q Consensus 121 vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt 150 (327)
+|+.+.+++.+.| +||++||+|. +|+-+
T Consensus 57 ~a~nLA~~La~~G-~~VlliD~D~-~~~~~ 84 (307)
T 3end_A 57 TSSNLSAAFSILG-KRVLQIGCDP-KHDST 84 (307)
T ss_dssp HHHHHHHHHHHTT-CCEEEEEESS-SCCTT
T ss_pred HHHHHHHHHHHCC-CeEEEEeCCC-CCCHH
Confidence 3333333344444 5999999998 46554
No 50
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=27.69 E-value=1.2e+02 Score=29.77 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc-CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHH
Q 020323 206 VFHEVIVPCAQRFKPDLILVSAG-YDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVA 284 (327)
Q Consensus 206 ~~~~~l~p~~~~f~PdlIvv~aG-~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~ 284 (327)
.|.+.|..+.+.|+|++|+|... .-...+|. +..+.+.+. . +.|++.+--.||..... .+..
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdD----------i~~v~~~~~----~--~~pVi~v~tpgf~g~~~-~G~~ 134 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDD----------PNGISRALN----L--PVPVVPLELPSYSRKEN-YGAD 134 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCC----------HHHHHHHHT----C--SSCEEECCCCTTTCCHH-HHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhccc----------HHHHHHHhc----C--CCCEEEEECCCcCCchh-HHHH
Confidence 44555666778899997776665 57777885 433333322 1 46888888888875422 2344
Q ss_pred HHHHHHh
Q 020323 285 DSFRAFL 291 (327)
Q Consensus 285 ~~~~~l~ 291 (327)
..+.+++
T Consensus 135 ~al~alv 141 (525)
T 3aek_B 135 ETFRALV 141 (525)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 51
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.37 E-value=84 Score=30.23 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHh---cCCcEEEEeCCCCCchhHHH
Q 020323 206 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDL---CGSRCVFFLEGGYNLNSLSY 281 (327)
Q Consensus 206 ~~~~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~---~~g~~v~vleGGY~~~~l~~ 281 (327)
-|.+.|..+.+.|+|++|+|...+ -...+|. +..+.+. +-.+. .+.|++.+--.||.. +-..
T Consensus 83 ~L~~aI~~~~~~~~P~~I~V~tTC~~e~IGdD----------i~~v~~~---~~~~~~~~~~~pvi~v~tpgf~g-s~~~ 148 (458)
T 1mio_B 83 NIKTAVKNIFSLYNPDIIAVHTTCLSETLGDD----------LPTYISQ---MEDAGSIPEGKLVIHTNTPSYVG-SHVT 148 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECHHHHHHTCC----------HHHHHHH---HHHTTCSCTTCEEEEECCCTTSS-CHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHHhcC----------HHHHHHH---HHHhcCCCCCCeEEEEECCCCcc-cHHH
Confidence 445556667889999988777654 4445553 3333222 22221 034677777777764 2334
Q ss_pred HHHHHHHHH
Q 020323 282 SVADSFRAF 290 (327)
Q Consensus 282 ~~~~~~~~l 290 (327)
++...++++
T Consensus 149 G~~~a~~al 157 (458)
T 1mio_B 149 GFANMVQGI 157 (458)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 52
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=27.36 E-value=42 Score=31.17 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCCeEEEEEccccccccccccc
Q 020323 121 VAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAF 154 (327)
Q Consensus 121 vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f 154 (327)
+|+...+++.+.| +||++||+| .+|+ ....|
T Consensus 160 ~a~nLA~~La~~g-~rVlliD~D-~~~~-l~~~l 190 (373)
T 3fkq_A 160 VAAACAIAHANMG-KKVFYLNIE-QCGT-TDVFF 190 (373)
T ss_dssp HHHHHHHHHHHHT-CCEEEEECC-TTCC-HHHHC
T ss_pred HHHHHHHHHHhCC-CCEEEEECC-CCCC-HHHHc
Confidence 3333333333334 699999999 6664 33344
No 53
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=27.16 E-value=49 Score=29.38 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=12.1
Q ss_pred CeEEEEEccccccc
Q 020323 135 KRVFIIDFDVHHGN 148 (327)
Q Consensus 135 ~RV~iiD~DvHhGn 148 (327)
+||++||.|...++
T Consensus 112 ~rVLLID~D~~~~~ 125 (271)
T 3bfv_A 112 YKTLIVDGDMRKPT 125 (271)
T ss_dssp CCEEEEECCSSSCC
T ss_pred CeEEEEeCCCCCcc
Confidence 69999999998764
No 54
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=27.16 E-value=80 Score=25.76 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=13.7
Q ss_pred HhcCCCEEEEeccC-CCC
Q 020323 216 QRFKPDLILVSAGY-DAH 232 (327)
Q Consensus 216 ~~f~PdlIvv~aG~-D~~ 232 (327)
..++||+|++..|. |..
T Consensus 82 ~~~~pd~vvi~~G~ND~~ 99 (214)
T 2hsj_A 82 YGGAVDKIFLLIGTNDIG 99 (214)
T ss_dssp CCSCCCEEEEECCHHHHH
T ss_pred HhcCCCEEEEEEecCcCC
Confidence 45799999999998 544
No 55
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=26.98 E-value=48 Score=29.90 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=12.4
Q ss_pred CeEEEEEccccccc
Q 020323 135 KRVFIIDFDVHHGN 148 (327)
Q Consensus 135 ~RV~iiD~DvHhGn 148 (327)
+||++||.|..+++
T Consensus 134 ~rVLLID~D~r~~~ 147 (299)
T 3cio_A 134 QKVLFIDADLRRGY 147 (299)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CcEEEEECCCCCcc
Confidence 69999999998776
No 56
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=26.75 E-value=91 Score=28.60 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCC
Q 020323 202 AMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGY 274 (327)
Q Consensus 202 ~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY 274 (327)
.+...|.+.+ |.+++|+-..||+-.|--+..+ .+....+.+.|..+... +.++++|-+||-
T Consensus 32 ~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~---------~~~~~~l~~~i~~l~~~--G~~vVlVhGgG~ 92 (321)
T 2v5h_A 32 DRVRILSEAL-PYLQQFAGRTVVVKYGGAAMKQ---------EELKEAVMRDIVFLACV--GMRPVVVHGGGP 92 (321)
T ss_dssp CHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHS---------HHHHHHHHHHHHHHHHT--TCEEEEEECCHH
T ss_pred hHHHHHHHHH-HHHHHhCCCeEEEEECchhhCC---------chHHHHHHHHHHHHHHC--CCEEEEEECCHH
Confidence 5667787764 8999999999999999766543 23445556666555432 346788888864
No 57
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=26.35 E-value=2.4e+02 Score=26.00 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 020323 200 DTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYN 275 (327)
Q Consensus 200 d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~ 275 (327)
..+...+|+.++ ..+.+.+||+||+ +| |... -+-..+.+.+..+.+.+..+... .+++ ++.|--+
T Consensus 25 ~~~~~~~l~~l~-~~~~~~~~D~vli-aG-Dl~h----d~~~~~~~~~~~~~~~l~~l~~~---~~v~-~i~GNHD 89 (379)
T 3tho_B 25 REELKKALDKVV-EEAEKREVDLILL-TG-DLLH----SRNNPSVVALHDLLDYLKRMMRT---APVV-VLPGNQD 89 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCSEEEE-CS-CCBS----CSSSCCHHHHHHHHHHHHHHHHH---SCEE-ECCCTTS
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEE-CC-Cccc----cCCCCCHHHHHHHHHHHHHHHhC---CCEE-EEcCCCc
Confidence 345667777655 5778889999888 33 3321 22344566777777777777543 3544 4555433
No 58
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=26.22 E-value=1.6e+02 Score=27.67 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.2
Q ss_pred HHHHhcCCCEEEEeccC-CCCC
Q 020323 213 PCAQRFKPDLILVSAGY-DAHV 233 (327)
Q Consensus 213 p~~~~f~PdlIvv~aG~-D~~~ 233 (327)
..+.+.+||+|||..|. |...
T Consensus 238 ~~l~~~~pdlVvI~lGtND~~~ 259 (385)
T 3skv_A 238 RLIRDLPADLISLRVGTSNFMD 259 (385)
T ss_dssp HHHHHSCCSEEEEEESHHHHTT
T ss_pred HHHhccCCCEEEEEeeccCCCC
Confidence 34567899999999998 5543
No 59
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=26.07 E-value=47 Score=28.92 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=14.8
Q ss_pred HHHHHcCCCeEEEEEccccccc
Q 020323 127 YAQRAHGLKRVFIIDFDVHHGN 148 (327)
Q Consensus 127 ~l~~~~~~~RV~iiD~DvHhGn 148 (327)
+++.+.| +||++||+|...++
T Consensus 41 ~~la~~G-~~VlliD~D~~~~~ 61 (262)
T 2ph1_A 41 VHYARQG-KKVGILDADFLGPS 61 (262)
T ss_dssp HHHHHTT-CCEEEEECCSSCCH
T ss_pred HHHHHCC-CeEEEEeCCCCCCC
Confidence 3334444 59999999997654
No 60
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=25.89 E-value=56 Score=29.89 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=14.6
Q ss_pred HHHHHcCCCeEEEEEccccccccc
Q 020323 127 YAQRAHGLKRVFIIDFDVHHGNGT 150 (327)
Q Consensus 127 ~l~~~~~~~RV~iiD~DvHhGnGt 150 (327)
.++.+.| +||++||+|.. ||-+
T Consensus 70 ~aLA~~G-kkVllID~Dpq-~~s~ 91 (314)
T 3fwy_A 70 AAFSILG-KRVLQIGCDPK-HDST 91 (314)
T ss_dssp HHHHHTT-CCEEEEEESSS-CCTT
T ss_pred HHHHHCC-CeEEEEecCCC-Cccc
Confidence 3344455 69999999973 4433
No 61
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=24.92 E-value=2.2e+02 Score=25.69 Aligned_cols=18 Identities=17% Similarity=0.536 Sum_probs=14.9
Q ss_pred hcCCCEEEEeccC-CCCCC
Q 020323 217 RFKPDLILVSAGY-DAHVL 234 (327)
Q Consensus 217 ~f~PdlIvv~aG~-D~~~~ 234 (327)
.++||+|+|..|. |....
T Consensus 211 ~~~PdlVvI~lGtND~~~~ 229 (341)
T 2wao_A 211 KYVPQVVVINLGTNDFSTS 229 (341)
T ss_dssp GCCCSEEEEECCHHHHSSS
T ss_pred CCCCCEEEEeCccccCCCC
Confidence 6899999999998 66544
No 62
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=24.80 E-value=1.2e+02 Score=29.59 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCch
Q 020323 209 EVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLN 277 (327)
Q Consensus 209 ~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~ 277 (327)
+.|..+.++|+|++|+|...+ -...+|. +..+.+.+.. + .+.|++.+--.||...
T Consensus 78 ~~I~~~~~~~~P~~I~V~tTC~~e~IGdD----------i~~v~~~~~~---~-~g~pVi~v~tpgf~g~ 133 (511)
T 2xdq_B 78 DNIIRKDTEEHPDLIVLTPTCTSSILQED----------LQNFVRRASL---S-TTADVLLADVNHYRVN 133 (511)
T ss_dssp HHHHHHHHHHCCSEEEEECCHHHHTTCCC----------HHHHHHHHHH---H-CSSEEEECCCCTTTCC
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHhccC----------HHHHHHHhhh---c-cCCCEEEeeCCCcccc
Confidence 344456788999998888776 7777774 4444443332 2 2568888888899754
No 63
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=24.64 E-value=3.5e+02 Score=24.84 Aligned_cols=67 Identities=4% Similarity=0.019 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhcC--CCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCc
Q 020323 203 MRTVFHEVIVPCAQRFK--PDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNL 276 (327)
Q Consensus 203 y~~~~~~~l~p~~~~f~--PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~ 276 (327)
+...+.+.+..++++|+ |+.|++..+ .+|.+ ..+...|....+.+....++....++++|-+-+|+.
T Consensus 118 ~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~--~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 118 DLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYG--SWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCC--SSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCC--CCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 34444455555667773 456666655 67766 344555554444444444444333455555556653
No 64
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=23.43 E-value=2.3e+02 Score=27.52 Aligned_cols=70 Identities=16% Similarity=-0.003 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcC-CCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHH
Q 020323 206 VFHEVIVPCAQRFK-PDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSV 283 (327)
Q Consensus 206 ~~~~~l~p~~~~f~-PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~ 283 (327)
-|.+.|..+.++|+ |++|+|...+ -...+|. +..+.+.+. .+. +.|++.+--.||...+-..+.
T Consensus 130 kL~~~I~~~~~~~~~P~~I~V~tTC~~e~IGdD----------l~~v~~~~~---~~~-~~pVi~v~tpgf~g~s~~~G~ 195 (492)
T 3u7q_A 130 KLAKLIDEVETLFPLNKGISVQSECPIGLIGDD----------IESVSKVKG---AEL-SKTIVPVRCEGFRGVSQSLGH 195 (492)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEECTHHHHTTCC----------HHHHHHHHH---HHH-TCCEEEECCCTTSSSSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCcHHHHHhcC----------HHHHHHHHH---Hhh-CCcEEEecCCCCCCCchhHHH
Confidence 45556667788999 9987776654 6666774 433333332 222 568998989999862333344
Q ss_pred HHHHHH
Q 020323 284 ADSFRA 289 (327)
Q Consensus 284 ~~~~~~ 289 (327)
...+++
T Consensus 196 ~~a~~a 201 (492)
T 3u7q_A 196 HIANDA 201 (492)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 65
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.91 E-value=1.4e+02 Score=29.49 Aligned_cols=73 Identities=23% Similarity=0.236 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHH---
Q 020323 206 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSY--- 281 (327)
Q Consensus 206 ~~~~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~--- 281 (327)
-|.+.|..+.++|+|++|+|...+ -...+|. +..+.+.+ ..+. +.|++.+--.||...+-..
T Consensus 121 kL~~aI~~~~~~~~P~~I~V~tTC~~eiIGdD----------i~~v~~~~---~~~~-~~pVi~v~tpGf~g~s~~~G~~ 186 (533)
T 1mio_A 121 KLKDAIHEAYEMFHPAAIGVYATCPVGLIGDD----------ILAVAATA---SKEI-GIPVHAFSCEGYKGVSQSAGHH 186 (533)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCHHHHHHTCC----------HHHHHHHH---HHHH-SSCEEECCCCTTSSSSTHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCHHHHhcCC----------HHHHHHHH---HHhh-CCcEEEEeCCCCcCcchhHHHH
Confidence 455666677899999998887765 4445553 33333322 2222 5688888888887533222
Q ss_pred -HHHHHHHHHhC
Q 020323 282 -SVADSFRAFLG 292 (327)
Q Consensus 282 -~~~~~~~~l~g 292 (327)
+...+++.+.+
T Consensus 187 ~a~~al~~~~~~ 198 (533)
T 1mio_A 187 IANNTVMTDIIG 198 (533)
T ss_dssp HHHHHHHHHTTB
T ss_pred HHHHHHHHHhcc
Confidence 33445555544
No 66
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.62 E-value=64 Score=29.31 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=12.7
Q ss_pred HHHHhcCCCEEEEeccC
Q 020323 213 PCAQRFKPDLILVSAGY 229 (327)
Q Consensus 213 p~~~~f~PdlIvv~aG~ 229 (327)
..+++.+.|+||+-+--
T Consensus 132 ~~~~~~~yD~VIiDtpP 148 (324)
T 3zq6_A 132 RYMTTDEYDIVIFDTAP 148 (324)
T ss_dssp HHHHHCCCSEEEEECCC
T ss_pred HHHHhCCCCEEEECCCC
Confidence 44557789999997763
No 67
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=22.43 E-value=1.1e+02 Score=25.45 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 020323 195 PGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSA 227 (327)
Q Consensus 195 ~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~a 227 (327)
+...+...-+..+.+-+..++++|+||.+.+=.
T Consensus 39 ~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~ 71 (166)
T 4ep4_A 39 SPQEPAKERVGRIHARVLEVLHRFRPEAVAVEE 71 (166)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 344445555556666677899999999998853
No 68
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=22.12 E-value=1.5e+02 Score=28.86 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHH--
Q 020323 206 VFHEVIVPCAQRFKPDLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYS-- 282 (327)
Q Consensus 206 ~~~~~l~p~~~~f~PdlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~-- 282 (327)
-|.+.|..+.++|+|++|+|...+ -...+|. +..+.+.+. .+. +.|++.+---||... -..+
T Consensus 109 kL~~~I~~~~~~~~P~~I~V~tTC~~e~IGdD----------l~~v~~~~~---~~~-~~pVi~v~tpgf~gs-~~~G~~ 173 (483)
T 3pdi_A 109 RLFHAIRQAVESYSPPAVFVYNTCVPALIGDD----------VDAVCKAAA---ERF-GTPVIPVDSAGFYGT-KNLGNR 173 (483)
T ss_dssp HHHHHHHHHHHHHCCSCEEEECCHHHHHTTCC----------HHHHHHHHH---HHH-CSCEEEECCCGGGCC-HHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHhcCC----------HHHHHHHHH---HHh-CCCEEEEeCCCcccc-hhhHHH
Confidence 455566677889999987766554 6666774 433333332 222 568888888888652 2233
Q ss_pred --HHHHHHHHhC
Q 020323 283 --VADSFRAFLG 292 (327)
Q Consensus 283 --~~~~~~~l~g 292 (327)
...+++.+.+
T Consensus 174 ~a~~al~~~l~~ 185 (483)
T 3pdi_A 174 IAGEAMLKYVIG 185 (483)
T ss_dssp HHHHHTHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 3445555654
No 69
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=22.02 E-value=58 Score=28.68 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=12.9
Q ss_pred HHHHcCCCeEEEEEccccc
Q 020323 128 AQRAHGLKRVFIIDFDVHH 146 (327)
Q Consensus 128 l~~~~~~~RV~iiD~DvHh 146 (327)
++.+.| +||++||+|.+.
T Consensus 60 ~la~~G-~rVlliD~D~q~ 77 (298)
T 2oze_A 60 LTDKLN-LKVLMIDKDLQA 77 (298)
T ss_dssp HHHHTT-CCEEEEEECTTC
T ss_pred HHHhCC-CeEEEEeCCCCC
Confidence 333444 699999999863
No 70
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=21.59 E-value=1.4e+02 Score=27.65 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=37.2
Q ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHhcCC-CEEEEeccC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcE
Q 020323 189 TLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKP-DLILVSAGY-DAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRC 266 (327)
Q Consensus 189 ~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~P-dlIvv~aG~-D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~ 266 (327)
.+|..++..+. ..++.. ..+.+++.+++| |+|||+.|. |.... ...+.+.|..-.+.+.+.+++. +.++
T Consensus 202 v~N~GisG~tt-~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~~~-----~~~~~~~~~~~l~~ii~~lr~~-~a~v 272 (375)
T 2o14_A 202 VRNMASGGQIA-RGFRND--GQLEAILKYIKPGDYFMLQLGINDTNPK-----HKESEAEFKEVMRDMIRQVKAK-GADV 272 (375)
T ss_dssp EEECCCTTCCH-HHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGCGG-----GCCCHHHHHHHHHHHHHHHHTT-TCEE
T ss_pred EEEeccCCCcH-hhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCCcc-----CCCCHHHHHHHHHHHHHHHHHC-CCEE
Confidence 45666654443 233320 123345677899 999999998 55432 2245566544333333333332 3344
Q ss_pred EEE
Q 020323 267 VFF 269 (327)
Q Consensus 267 v~v 269 (327)
+++
T Consensus 273 ilv 275 (375)
T 2o14_A 273 ILS 275 (375)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 71
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=21.35 E-value=3.5e+02 Score=23.11 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCC
Q 020323 201 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGY 274 (327)
Q Consensus 201 ~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY 274 (327)
+..+..+++.+ .+..+...+.|++..|+... . +.+.+.++.+.+.+++.....-.+.+.+|--.
T Consensus 98 ~~~~~~~~~~i-~~a~~lG~~~v~~~~G~~~~-----~----~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~ 161 (290)
T 3tva_A 98 ASRVAEMKEIS-DFASWVGCPAIGLHIGFVPE-----S----SSPDYSELVRVTQDLLTHAANHGQAVHLETGQ 161 (290)
T ss_dssp HHHHHHHHHHH-HHHHHHTCSEEEECCCCCCC-----T----TSHHHHHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEcCCCCcc-----c----chHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 44456666655 57889999999999886531 1 56677777777777765443333566677654
No 72
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=21.25 E-value=3.2e+02 Score=25.13 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHHHHHHHHH
Q 020323 201 TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLA 258 (327)
Q Consensus 201 ~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~~~l~~~a 258 (327)
.+...+|+.++ ..+.+.+||+||+ +| |.. ..-.-+.+.+..+.+.+.++.
T Consensus 43 ~~~~~~l~~~v-~~~~~~~~D~Vli-aG-Dl~-----d~~~p~~~~~~~~~~~l~~L~ 92 (386)
T 3av0_A 43 KDIYDSFKLCI-KKILEIKPDVVLH-SG-DLF-----NDLRPPVKALRIAMQAFKKLH 92 (386)
T ss_dssp HHHHHHHHHHH-HHHHTTCCSEEEE-CS-CSB-----SSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEE-CC-CCC-----CCCCCCHHHHHHHHHHHHHHH
Confidence 34556777765 4667789998877 34 332 122234455555556666664
No 73
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=20.30 E-value=62 Score=27.19 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCCeEEEEEcccccccc
Q 020323 122 AIAARYAQRAHGLKRVFIIDFDVHHGNG 149 (327)
Q Consensus 122 Aiaa~~l~~~~~~~RV~iiD~DvHhGnG 149 (327)
|+.+.+.+.+.| ||++||+|.. |+.
T Consensus 18 a~~LA~~la~~g--~VlliD~D~q-~~~ 42 (209)
T 3cwq_A 18 AVHLSAYLALQG--ETLLIDGDPN-RSA 42 (209)
T ss_dssp HHHHHHHHHTTS--CEEEEEECTT-CHH
T ss_pred HHHHHHHHHhcC--CEEEEECCCC-CCH
Confidence 333334444556 9999999975 443
Done!