BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020326
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 189/327 (57%), Gaps = 9/327 (2%)
Query: 5 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLF 64
+ + VCVTGASG+I SWLV LL RGYTV+A+VRDP + KK HLL L A L L+
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 65 KANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIK 124
KA+L +EGS+D + GC GVFH A+P + KDP+ E++ P ++G + ++ SCA +++
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVR 121
Query: 125 RVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKL--W-YVLSKTLAEDAAWKFA 181
R+V TSS V + + P V DE+ +SD E C+ K+ W Y +SKTLAE AAWK+A
Sbjct: 122 RLVFTSSAGTVNIQ-EHQLP--VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYA 178
Query: 182 KEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNATL--GWVNVKDVANAH 239
KE +ID +TI P +V+GP + ++ S LS I G + + + +V++ D+ NAH
Sbjct: 179 KENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAH 238
Query: 240 IQAFEVPSASGRYCLVERVLHYSKLVNTVHELYPTFELPEKCADDKPYVPTYQVSKEKAK 299
I FE P A GRY L + E YP + +P + + + S +K
Sbjct: 239 IYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLT 298
Query: 300 NLGIEF-IPLEVSLKETIESLKEKGFV 325
+LG EF LE +++ + KG +
Sbjct: 299 DLGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 186/330 (56%), Gaps = 16/330 (4%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANL 68
K CV G +G++AS LVKLLL +GY V +VRDP++ KK HLL L + L++F+A+L
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRADL 68
Query: 69 LEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRVVL 128
+E S+++ + GCD VFH A+P + +DP+ +++ PA++G VNV+ +C + S+KRV+L
Sbjct: 69 TDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVIL 128
Query: 129 TSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSK--LW-YVLSKTLAEDAAWKFAKEKS 185
TSS AAV N T +VVDE ++D E +K W Y SKTLAE AAWKFA+E +
Sbjct: 129 TSSAAAVTINQLDGT-GLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENN 187
Query: 186 IDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNATLGW---------VNVKDVA 236
ID++T+ P ++ G L + +S +SLI G + N G +V+DV
Sbjct: 188 IDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVC 247
Query: 237 NAHIQAFEVPSASGRYCLVERVLHYSKLVNTVHELYPTFELPEKCADDKPYVPTYQVSKE 296
AHI E SASGRY +L + + YP +++P D P +S E
Sbjct: 248 RAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPK-SKLIISSE 306
Query: 297 KAKNLGIEF-IPLEVSLKETIESLKEKGFV 325
K G F +E E++E K KG +
Sbjct: 307 KLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 171/324 (52%), Gaps = 14/324 (4%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTGHLLALDGASERLQLFKANLL 69
VCVTG +G++ SW++K LL GY+V ++R DP + L L GASE+L F A+L
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 70 EEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRVVLT 129
S+ + ++GC G+FHTASP V +P+ + V G + +L +C ++KR + T
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 130 SSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW---YVLSKTLAEDAAWKFAKEKSI 186
SS +AV++NGK + V+DE+ +SD ++ + K + Y +SKTLAE A +F ++ I
Sbjct: 124 SSGSAVSFNGKDKD---VLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGI 180
Query: 187 DMVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNAT-LGWVNVKDVANAHIQAFEV 245
D+VT+ ++G + P L S L L+ G + T V+V DVA AHI E
Sbjct: 181 DVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLEN 240
Query: 246 PSASGRYCLVERVLHYSKLVNTVHELYPTFELPEKCADDKPYVPTYQVSKEKAKNL---G 302
GRY ++ ++ + YP +++ D+ + ++ K L G
Sbjct: 241 SVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQI--LTVDELKEIKGARLPDLNTKKLVDAG 298
Query: 303 IEF-IPLEVSLKETIESLKEKGFV 325
+F +E + I+ KEKG++
Sbjct: 299 FDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 157/336 (46%), Gaps = 34/336 (10%)
Query: 8 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKA- 66
G +V VTGA+G++AS +V+ LL GY V+ + R + K +L A + A
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS---KLANLQKRWDAKYPGRFETAV 67
Query: 67 --NLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIK 124
++L++G+YD V+ G GV H AS K E++ PA+ GT+N L + A PS+K
Sbjct: 68 VEDMLKQGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 125 RVVLTSSMAAVAYNGKPRTPDVVVDE-TWFSD--------PEVCKQSKLW-YVLSKTLAE 174
R VLTSS + A KP + +DE +W + PE Q LW Y SKT AE
Sbjct: 126 RFVLTSSTVS-ALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAE 184
Query: 175 DAAWKFAKEKS--IDMVTINPAMVIGPLLQPTLNTSAAA--VLSLIKGAQTYPNATLG-- 228
AAWKF E + + P IG + P + + + ++SL G + P L
Sbjct: 185 LAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNG-EVSPALALMPP 243
Query: 229 --WVNVKDVANAHIQAFEVPSASGRYCL-VERVLHYSKLVNTVHELYPTFELPEKCADDK 285
+V+ D+ H+ +P R ++ ++ T +LYP+ P D
Sbjct: 244 QYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQG 303
Query: 286 PYVPTYQV--SKEKAKNLGIEFIPLEVSLKETIESL 319
+ + S E K+LG P S++E+I+ L
Sbjct: 304 QDLSKFDTAPSLEILKSLG---RPGWRSIEESIKDL 336
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 153/335 (45%), Gaps = 32/335 (9%)
Query: 8 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKA- 66
G +V VTGA+G++AS +V+ LL GY V+ + R + K +L A + A
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS---KLANLQKRWDAKYPGRFETAV 67
Query: 67 --NLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIK 124
+ L++G+YD V+ G GV H AS K E++ PA+ GT+N L + A PS+K
Sbjct: 68 VEDXLKQGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 125 RVVLTSSMAAVAYNGKPRTPDVVVDE-TWFSD--------PEVCKQSKLW-YVLSKTLAE 174
R VLTSS + A KP + +DE +W + PE Q LW Y SKT AE
Sbjct: 126 RFVLTSSTVS-ALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAE 184
Query: 175 DAAWKFAKEKS--IDMVTINPAMVIGPLLQP-TLNTSAAAVLSLIKGAQTYPNATLG--- 228
AAWKF E + + P IG + P T + S + + + P L
Sbjct: 185 LAAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALALXPPQ 244
Query: 229 -WVNVKDVANAHIQAFEVPSASGRYCL-VERVLHYSKLVNTVHELYPTFELPEKCADDKP 286
+V+ D+ H+ +P R ++ ++ T +LYP+ P D
Sbjct: 245 YYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQ 304
Query: 287 YVPTYQV--SKEKAKNLGIEFIPLEVSLKETIESL 319
+ + S E K+LG P S++E+I+ L
Sbjct: 305 DLSKFDTAPSLEILKSLG---RPGWRSIEESIKDL 336
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 136/330 (41%), Gaps = 47/330 (14%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANL 68
K V +TG G I S + +LLL RG V D TG L L + ++
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKVVGI-----DNFATGRREHLKD-HPNLTFVEGSI 75
Query: 69 LEEGSYDSVVDGC--DGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRV 126
+ + ++ D V HTA+ Y D D + L V G+ NV+ + AK ++ R
Sbjct: 76 ADHALVNQLIGDLQPDAVVHTAAS-YKDPDDWYNDTLTNCVGGS-NVVQA-AKKNNVGRF 132
Query: 127 VLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLWYVLSKTLAEDAAWKFAKEKSI 186
V + A+ Y KP V +D P S Y +SK+ ED + + +
Sbjct: 133 VYFQT--ALCYGVKPIQQPVRLDH-----PRNPANSS--YAISKSANED----YLEYSGL 179
Query: 187 DMVTINPAMVIGPLLQPTLNTSAAAVL---SLIKGAQTY-PNATLGWVNVKDVANAHIQA 242
D VT A V+GP N S + L +G + + A +V VKD+A A ++A
Sbjct: 180 DFVTFRLANVVGP-----RNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRA 234
Query: 243 FEVPSASGRYCLVERVLHYSKLVNTVHEL-----YPTFELPEKCADDKPYV---PTYQVS 294
+ + + +L + V E YP E+ E DD P + P+ +
Sbjct: 235 VDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTI- 293
Query: 295 KEKAKNLG-IEFIPLEVSLKETIESLKEKG 323
++ G IEF PL+ ++ + +E G
Sbjct: 294 ----QDFGKIEFTPLKETVAAAVAYFREYG 319
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 25/180 (13%)
Query: 13 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANLLEEG 72
VTGA+G + S + L + + V+ S ++ L A ++ +L +
Sbjct: 7 VTGAAGGVGSAIRPHLGTLAHEVRLS-----------DIVDLGAAEAHEEIVACDLADAQ 55
Query: 73 SYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRVVLTSSM 132
+ +V CDG+ H V+ P ++L + G N L A+ R+V SS
Sbjct: 56 AVHDLVKDCDGIIHLGGV---SVERPWNDILQANIIGAYN-LYEAARNLGKPRIVFASSN 111
Query: 133 AAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLWYVLSKTLAEDAAWKFAKEKSIDMVTIN 192
+ Y PRT + D EV ++ Y LSK ED A + + I+ + I
Sbjct: 112 HTIGY--YPRTTRI--------DTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIR 161
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANL 68
K + + GASG++ S L+ L+RG+ V A VR P K +E L++ KA++
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADV 55
Query: 69 LEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAK 119
S D V + C G S F +P ++ D +K + +++ K
Sbjct: 56 ---SSLDEVCEVCKGADAVISAFNPGWNNP--DIYDETIKVYLTIIDGVKK 101
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 7 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKA 66
A K + VTGA+G + + + L ++ + P DP A + +
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDP-----------AGPNEECVQC 50
Query: 67 NLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRV 126
+L + + +++V GCDG+ H V+ P ++L + G N L A+ R+
Sbjct: 51 DLADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYN-LYEAARAHGQPRI 106
Query: 127 VLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLWYVLSKTLAEDAAW----KFAK 182
V SS + Y P+T + P+V + Y +SK E+ A KF +
Sbjct: 107 VFASSNHTIGY--YPQTERL--------GPDVPARPDGLYGVSKCFGENLARMYFDKFGQ 156
Query: 183 EKSI 186
E ++
Sbjct: 157 ETAL 160
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 102/259 (39%), Gaps = 56/259 (21%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVK-----ASVRDPNDPKKTGHLLALDGASERLQLFK 65
V VTG +G+I S +V+ LL+RG V A+ + N PK + F+
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKG-------------VPFFR 49
Query: 66 ANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQ----VELLDPAVKGTV------NVLN 115
+L ++ +G + F P + + Q V + DP + V N+L
Sbjct: 50 VDLRDK-------EGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLE 102
Query: 116 SCAKFPSIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLWYVLSKTLAED 175
+C ++ ++++V S+ A+ Y P +ETW P K Y SK E
Sbjct: 103 ACRQY-GVEKLVFASTGGAI-YGEVPEGER--AEETWPPRP------KSPYAASKAAFEH 152
Query: 176 AAWKFAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLS--LIKG--AQTYPNATLG--- 228
+ + + V++ V GP P A+ + ++KG Y T G
Sbjct: 153 YLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEG 212
Query: 229 ----WVNVKDVANAHIQAF 243
+V V DVA AH A
Sbjct: 213 CVRDYVYVGDVAEAHALAL 231
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 113/285 (39%), Gaps = 37/285 (12%)
Query: 10 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTG--HLLALDGASERLQLFKAN 67
++ VTG+SG I + LV L + Y K + + TG + LD S R ++ +A
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK-YGKKNVIASDIVQRDTGGIKFITLD-VSNRDEIDRA- 57
Query: 68 LLEEGSYDSVVDGCDGVFHTASPFY-HDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRV 126
+E+ S D +FH A KDP + + GT N+L AK +++V
Sbjct: 58 -VEKYS-------IDAIFHLAGILSAKGEKDPAL-AYKVNMNGTYNILE-AAKQHRVEKV 107
Query: 127 VLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLWYVLSKTLAEDAAWKFAKEKSI 186
V+ S++ P TP V + P + Y ++K AE + ++ +
Sbjct: 108 VIPSTIGVFG----PETPKNKVPSITITRP------RTMYGVTKIAAELLGQYYYEKFGL 157
Query: 187 DMVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-------PNATLGWVNVKDVANAH 239
D+ ++ +I +PT T+ AV + PN L + + D A
Sbjct: 158 DVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKAL 217
Query: 240 IQAFEVPS----ASGRYCLVERVLHYSKLVNTVHELYPTFELPEK 280
+ +E Y + S+L + + E P FE+ K
Sbjct: 218 VDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYK 262
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 7 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKA 66
A K + VTGA+G + + + L ++ + P DP A + +
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDP-----------AGPNEECVQC 50
Query: 67 NLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRV 126
+L + + +++V GCDG+ H V+ P ++L + G N L A+ R+
Sbjct: 51 DLADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYN-LYEAARAHGQPRI 106
Query: 127 VLTSSMAAVAY 137
V SS + Y
Sbjct: 107 VFASSNHTIGY 117
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 98/257 (38%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +S AA Y +P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSS--AATVYGDQPKIPYVESFPTGTPQSPFGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 98/257 (38%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +SS A Y +P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSSS--ATVYGDQPKIPYVESFPTGTPQSPFGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 98/257 (38%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +SS A Y +P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSSS--ATVYGDQPKIPYVESFPTGTPQSPYGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 19/194 (9%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANLLE 70
+ +TGA G+IAS + + L G+ V AS D KK H+ D + L ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTE-DMFCDEFHLVDLRVME 85
Query: 71 EGSYDSVVDGCDGVFHTASPF--YHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRVVL 128
+ V +G D VF+ A+ ++ ++ + N++ + A+ IKR
Sbjct: 86 --NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 129 TSSMAAVAYNGKPRTPDVVVDET--WFSDPEVCKQSKLWYVLSKTLAEDAAWKFAKEKSI 186
SS + T +V + E+ W ++P+ Y L K E+ + K+ I
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------YGLEKLATEELCKHYNKDFGI 196
Query: 187 DMVTINPAMVIGPL 200
+ + GP
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 98/257 (38%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +S AA Y +P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSS--AATVYGDQPKIPYVESFPTGTPQSPYGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 19/194 (9%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANLLE 70
+ +TGA G+IAS + + L G+ V AS D KK H+ D + L ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTE-DMFCDEFHLVDLRVME 85
Query: 71 EGSYDSVVDGCDGVFHTASPF--YHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRVVL 128
+ V +G D VF+ A+ ++ ++ + N++ + A+ IKR
Sbjct: 86 --NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 129 TSSMAAVAYNGKPRTPDVVVDET--WFSDPEVCKQSKLWYVLSKTLAEDAAWKFAKEKSI 186
SS + T +V + E+ W ++P+ Y L K E+ + K+ I
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------YGLEKLATEELCKHYNKDFGI 196
Query: 187 DMVTINPAMVIGPL 200
+ + GP
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 8 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKAN 67
+ + +TG +G V+ +L K V ++ K++ +A++ R++ F +
Sbjct: 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSE--MAMEFNDPRMRFFIGD 78
Query: 68 LLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQ-VELLDPAVKGTVNVLNSCAKFPSIKRV 126
+ + + ++G D H A+ + + + +E + + G NV+N+C K + +
Sbjct: 79 VRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVI 138
Query: 127 VLTSSMAAVAYN 138
L++ AA N
Sbjct: 139 ALSTDKAANPIN 150
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +S AA Y P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSS--AATVYGDNPKIPYVESFPTGTPQSPFGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +SS A Y P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSSS--ATVYGDNPKIPYVESFPTGTPQSPYGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +SS A Y P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSSS--ATVYGDNPKIPYVESFPTGTPQSPYGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 37/285 (12%)
Query: 10 VVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTG--HLLALDGASERLQLFKAN 67
++ VTG+SG I + LV L + Y K + + TG + LD S R ++ +A
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK-YGKKNVIASDIVQRDTGGIKFITLD-VSNRDEIDRA- 57
Query: 68 LLEEGSYDSVVDGCDGVFHTASPFY-HDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRV 126
+E+ S D +FH A KDP + + GT N+L + AK +++V
Sbjct: 58 -VEKYS-------IDAIFHLAGILSAKGEKDPALA-YKVNMNGTYNILEA-AKQHRVEKV 107
Query: 127 VLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLWYVLSKTLAEDAAWKFAKEKSI 186
V+ S++ P TP V + P + + ++K AE + ++ +
Sbjct: 108 VIPSTIGVFG----PETPKNKVPSITITRP------RTMFGVTKIAAELLGQYYYEKFGL 157
Query: 187 DMVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-------PNATLGWVNVKDVANAH 239
D+ ++ +I +PT T+ AV + PN L + + D A
Sbjct: 158 DVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKAL 217
Query: 240 IQAFEVPS----ASGRYCLVERVLHYSKLVNTVHELYPTFELPEK 280
+ +E Y + S+L + + E P FE+ K
Sbjct: 218 VDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYK 262
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +S AA Y P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSS--AATVYGDNPKIPYVESFPTGTPQSPYGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 19/194 (9%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANLLE 70
+ +TGA G+IAS + + L G+ V AS D KK H+ D + L ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTE-DMFCDEFHLVDLRVME 85
Query: 71 EGSYDSVVDGCDGVFHTASPF--YHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRVVL 128
+ V +G D VF+ A+ ++ ++ + N++ + A+ IKR
Sbjct: 86 --NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 129 TSSMAAVAYNGKPRTPDVVVDET--WFSDPEVCKQSKLWYVLSKTLAEDAAWKFAKEKSI 186
SS + T +V + E+ W ++P+ Y L + E+ + K+ I
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------YGLERLATEELCKHYNKDFGI 196
Query: 187 DMVTINPAMVIGPL 200
+ + GP
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 19/194 (9%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANLLE 70
+ +TGA G+IAS + + L G+ V AS D KK H+ D + L ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTE-DMFCDEFHLVDLRVME 85
Query: 71 EGSYDSVVDGCDGVFHTASPF--YHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIKRVVL 128
+ V +G D VF+ A+ ++ ++ + N++ + A+ IKR
Sbjct: 86 --NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 129 TSSMAAVAYNGKPRTPDVVVDET--WFSDPEVCKQSKLWYVLSKTLAEDAAWKFAKEKSI 186
SS + T +V + E+ W ++P+ + L K E+ + K+ I
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------FGLEKLATEELCKHYNKDFGI 196
Query: 187 DMVTINPAMVIGPL 200
+ + GP
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 97/257 (37%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +S+ A Y P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSST--ATVYGDNPKIPYVESFPTGTPQSPYGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKAS 38
V VTGA+G + S V L RGYTV+AS
Sbjct: 153 VLVTGATGGVGSLAVSXLAKRGYTVEAS 180
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 34/257 (13%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTGHLLALDGASERL 61
V VTG SGYI S LL G+ V K SV + H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFP 121
+ +L + + D+V+ F V+ P +E D V GT+ ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIH-----FAGLKAVGESVQKP-LEYYDNNVNGTLRLI-SAMRAA 114
Query: 122 SIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAEDAAWK 179
++K + +S A Y P+ P V T K SKL +L+ W
Sbjct: 115 NVKNFIFSS--VATVYGDNPKIPYVESFPTGTPQSPYGK-SKLMVEQILTDLQKAQPDWS 171
Query: 180 FAKEKSIDMVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTYP----NATL 227
A + + V +P+ +G Q N + + G YP
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231
Query: 228 GWVNVKDVANAHIQAFE 244
+++V D+A+ H+ A E
Sbjct: 232 DYIHVMDLADGHVVAME 248
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 8 GKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTGHLLALDG-ASERLQLFK 65
GK V VTG +G+ WL L + G TVK S+ P P DG SE +
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD 68
Query: 66 ANLLEEGSYDSVVDGCDGVFHTAS-PFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSIK 124
N L E + + VFH A+ P VE V GTV +L + +K
Sbjct: 69 QNKLLESIREFQ---PEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVK 125
Query: 125 RVVLTSS 131
VV +S
Sbjct: 126 AVVNITS 132
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From Sinorhizobium
Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From Sinorhizobium
Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From Sinorhizobium
Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From Sinorhizobium
Meliloti 1021
Length = 260
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR------DPNDPKKTGHLLALDGASERLQ 62
KVV +TGAS I + LV+ R Y V A+ R DP+ G + + A +
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETAD---R 85
Query: 63 LFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCA 118
+ + + G DS+V+ GVF A PF ++ L V G ++ A
Sbjct: 86 IVREGIERFGRIDSLVNNA-GVF-LAKPFVEXTQEDYDHNLGVNVAGFFHITQRAA 139
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR 40
K+ +TG +G S+L + LL +GY V +R
Sbjct: 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIR 60
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 7 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVR 40
+GK +TG G ++L KLLL +GY V + R
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADR 35
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 61/217 (28%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKA-----SVRDPNDPKKTGHLLALDGASERLQL 63
K + +TG +G++ S L L+ G+ V + R N GH E +L
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGH--------ENFEL 57
Query: 64 FKANLLEEGSYDSVVDGCDGVFHTASP------FYHDVKDPQVELLDPAVKGTVNVLNSC 117
+++E + D ++H ASP Y+ +K + + GT+N+L
Sbjct: 58 INHDVVE-----PLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTI-----GTLNMLGLA 107
Query: 118 AKFPSIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSK-LW----------- 165
+ + R++L S+ + DPEV QS+ W
Sbjct: 108 KRVGA--RLLLASTSEV------------------YGDPEVHPQSEDYWGHVNPIGPRAC 147
Query: 166 YVLSKTLAEDAAWKFAKEKSIDMVTINPAMVIGPLLQ 202
Y K +AE + + K++ +++ GP +
Sbjct: 148 YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMH 184
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 1 MSGAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASER 60
M+ + A V V G +G++ S LVK LL G V + +K + D + R
Sbjct: 25 MNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK---INVPDHPAVR 81
Query: 61 LQLFKANLLEEGSYDSVVDGCDGVFHTASPFYH----DVKDPQVELLDPAVKGTVNVLNS 116
+ ++ ++ S+ D D VFH A+ YH + DP + + + T+ +
Sbjct: 82 FS--ETSITDDALLASLQDEYDYVFHLAT--YHGNQSSIHDPLADHENNTLT-TLKLYER 136
Query: 117 CAKFPSIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--------YVL 168
F +K+VV +++ ++A E F D + +++ + Y +
Sbjct: 137 LKHFKRLKKVVYSAAGCSIA-------------EKTFDDAKATEETDIVSLHNNDSPYSM 183
Query: 169 SKTLAEDAAWKFAKEKSIDMVTINPAMVIGP 199
SK E + + K+ + V V GP
Sbjct: 184 SKIFGEFYSVYYHKQHQLPTVRARFQNVYGP 214
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 104/279 (37%), Gaps = 60/279 (21%)
Query: 4 AAAAGKVVCVTGASGYIASWLVKLLLSRGY-TVKASVRDPNDPKKTGHLLALDGASERLQ 62
+ + K+V VTG +GYI S V L+ GY V A + L L +
Sbjct: 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL--TKHHIP 64
Query: 63 LFKANLLEEGSYDSVVD--GCDGVFHTAS------------PFYHDVKDPQVELLDPAVK 108
++ +L + + V D V H A +YH+ +
Sbjct: 65 FYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHN-----------NIL 113
Query: 109 GTVNVLNSCAKFPSIKRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVC------KQS 162
GTV +L ++ ++ + V +SS A Y R P+++ PE C
Sbjct: 114 GTVVLLELMQQY-NVSKFVFSSS--ATVYGDATRFPNMI------PIPEECPLGPTNPYG 164
Query: 163 KLWYVLSKTL-----AEDAAWKFAKEKSIDMVTINPAMVIG--PLLQPTLNTSAAAVLSL 215
Y + L ++ +WKFA + + + +P+ +IG PL P A +++
Sbjct: 165 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAV 224
Query: 216 IKGAQTY----------PNATLGWVNVKDVANAHIQAFE 244
+ + Y +++V D+A HI A +
Sbjct: 225 GRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQ 263
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 24/136 (17%)
Query: 8 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKAN 67
GK V VTG +G+ SWL L G VK G+ L ++ + N
Sbjct: 9 GKRVFVTGHTGFKGSWLSLWLTEMGAIVK------------GYALDAPTVPSLFEIVRLN 56
Query: 68 LLEEGSYDSVVD-----------GCDGVFHTAS-PFYHDVKDPQVELLDPAVKGTVNVLN 115
L E + D + VFH A+ P + ++ V GTV++L
Sbjct: 57 DLMESHIGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLE 116
Query: 116 SCAKFPSIKRVVLTSS 131
+ + +IK VV +S
Sbjct: 117 TVKQVGNIKAVVNITS 132
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDG 56
V V G +G+I + L +LL +RG+ V R P + T LA G
Sbjct: 3 VLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASG 48
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 13 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLA-LDG--ASERLQLFKANL- 68
+TGA+G++ ++L++ L + + +R N+ L+ L+ + E +++ +N+
Sbjct: 155 LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIE 214
Query: 69 LEEGSY---DSVV--DGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSCAKFPSI 123
+ G + D VV + D + H + H D + E ++ V+GTV+V+ + +
Sbjct: 215 VIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVN--VQGTVDVIRLAQQHHA- 271
Query: 124 KRVVLTSSMAAVAYNGKPRTPDVVVDETWFSDPEVCKQSKLW--YVLSKTLAE 174
R++ S+++ Y D+ ++ FS+ +V K L Y SK +E
Sbjct: 272 -RLIYVSTISVGTY------FDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSE 317
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 99/262 (37%), Gaps = 45/262 (17%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTV-----------KASVRDPNDPKKTGHLLALDGASE 59
+ VTG +GYI S LL+ GY V +A R KT D + E
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDE 67
Query: 60 R--LQLFKANLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELLDPAVKGTVNVLNSC 117
R ++F A+ + + + + +Y ++ L
Sbjct: 68 RALARIFDAHPITAAIHFAALKAVGESVAKPIEYYR------------NNLDSLLSLLRV 115
Query: 118 AKFPSIKRVVLTSSMAAVAYNGKPRTPDVVVDETW-FSDPEVCKQSKLW--YVLSKTLAE 174
+ ++KR+V +SS A Y R+P +DET+ S Q+KL +L A
Sbjct: 116 MRERAVKRIVFSSS--ATVYGVPERSP---IDETFPLSATNPYGQTKLMAEQILRDVEAA 170
Query: 175 DAAWKFAKEKSIDMVTINPAMVIGP-------LLQPTLNTSAAAVLSLIK-GAQTYP--- 223
D +W+ A + + V + + +IG L P + A L ++ YP
Sbjct: 171 DPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPD 230
Query: 224 -NATLGWVNVKDVANAHIQAFE 244
+++V D+A HI A +
Sbjct: 231 GTGVRDYIHVVDLARGHIAALD 252
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 11 VCVTGASGYIASWLVKLLLSRGY----TVKASVRDPNDPKKTGHLLALDGASERLQLFKA 66
+ VTG +G+I S V+ LL+ Y + V D LA A RL+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 67 NLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELL-DPAVKGTVNVLNSCAKFPSIKR 125
++ + G + G D + H A+ + D + + V+GT +L CA + R
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGVGR 121
Query: 126 VVLTSS 131
VV S+
Sbjct: 122 VVHVST 127
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 11 VCVTGASGYIASWLVKLLLSRGY----TVKASVRDPNDPKKTGHLLALDGASERLQLFKA 66
+ VTG +G+I S V+ LL+ Y + V D LA A RL+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 67 NLLEEGSYDSVVDGCDGVFHTASPFYHDVKDPQVELL-DPAVKGTVNVLNSCAKFPSIKR 125
++ + G + G D + H A+ + D + + V+GT +L CA + R
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGVGR 121
Query: 126 VVLTSS 131
VV S+
Sbjct: 122 VVHVST 127
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 10 VVCVTGASGYIASWLVKLLLSRGYTVKASVR 40
V +TG +G S+L + LL +GY V VR
Sbjct: 26 VALITGITGQDGSYLAEFLLEKGYEVHGIVR 56
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 24 LVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKA 66
+VKLLL++G V A +D N P+ HL +G E ++L A
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPE---HLAKKNGHHEIVKLLDA 96
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 25 VKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLF 64
VK LLS+G V A +D N P HL A +G +E ++L
Sbjct: 25 VKKLLSKGADVNARSKDGNTPL---HLAAKNGHAEIVKLL 61
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTGHLLALDG 56
+ VTG +G ++L KLLL +GY V V R +D + L ++G
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEG 63
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR 40
KV +TG +G S+L + LL +GY V R
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR 33
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 30/129 (23%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANLLE 70
+ VTG +G+I S LV L+ GY V D + L D L+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRD-------------LK 49
Query: 71 EGSYDSVVDGCDGVFHTASPFYHDVKDPQVEL--------LDPAVKGTVNVLNSCAKFPS 122
+ S+ + + G D VFH A+ +P+V L + V T NVL A+
Sbjct: 50 DYSWGAGIKG-DVVFHFAA-------NPEVRLSTTEPIVHFNENVVATFNVLE-WARQTG 100
Query: 123 IKRVVLTSS 131
++ VV SS
Sbjct: 101 VRTVVFASS 109
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGAS---ERLQLFKAN 67
+ V GA+G S +V RG+ V A VR DP+K L A+ E L L +A+
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVR---DPQKAADRLGATVATLVKEPLVLTEAD 59
Query: 68 LLEEGSYDSVVDGCDGVFHTASPFYH-DVKDPQVELLDPAVKGTVNVLNSCA 118
L S D+VVD + + + H D V LL + V +L S +
Sbjct: 60 L---DSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGSAS 108
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 26/129 (20%)
Query: 11 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALDGASERLQLFKANLLE 70
+ VTG +G+I S LV L+ GY V D +G ++ ++E L+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVV-----DNLSSGRREFVNPSAE----LHVRDLK 53
Query: 71 EGSYDSVVDGCDGVFHTASPFYHDVKDPQVEL--------LDPAVKGTVNVLNSCAKFPS 122
+ S+ + + G D VFH A+ +P+V L + V T NVL A+
Sbjct: 54 DYSWGAGIKG-DVVFHFAA-------NPEVRLSTTEPIVHFNENVVATFNVL-EWARQTG 104
Query: 123 IKRVVLTSS 131
++ VV SS
Sbjct: 105 VRTVVFASS 113
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 9 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTGHLLALD 55
+++ VTG +G+I S +VK L +G T V + D K +L+ L+
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN 93
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0C|A Chain A, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0F|X Chain X, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0F|A Chain A, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0D|X Chain X, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
pdb|3Q0D|A Chain A, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
Length = 167
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTAS-------PFYHDVKDPQVELLDPAVKGTVNVL 114
+L +++ G Y+ V+D D + +T KD Q+ + A+K ++N
Sbjct: 43 ELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKK 102
Query: 115 NSCAKFPSIKRVVLTSSMAAVAY 137
N IK L SS+ A Y
Sbjct: 103 NPVRVIRGIKNTTLQSSVVAKNY 125
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna
Complex In Space Group P42212
Length = 167
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 62 QLFKANLLEEGSYDSVVDGCDGVFHTAS-------PFYHDVKDPQVELLDPAVKGTVNVL 114
+L +++ G Y+ V+D D + +T KD Q+ + A+K ++N
Sbjct: 43 ELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKK 102
Query: 115 NSCAKFPSIKRVVLTSSMAAVAY 137
N IK L SS+ A Y
Sbjct: 103 NPVRVIRGIKNTTLQSSVVAKNY 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,897,089
Number of Sequences: 62578
Number of extensions: 398625
Number of successful extensions: 1128
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 67
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)