BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020327
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DWL|D Chain D, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|I Chain I, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 317
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 164/327 (50%), Gaps = 26/327 (7%)
Query: 1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
ML L ++ F+ E L R + + + +D +FD V +H+ + I
Sbjct: 1 MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHISTPEEKTKILISLSMK-- 57
Query: 61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
+ + +G ++ +K YG V P G+N ++ ++L +LP +E K L +
Sbjct: 58 -----CYPELVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109
Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
I+ ++ VL AP + L LA K + +L+A+ +R +E+ L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169
Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
P+ ++VTVVF +F + D + FLQEFV+ARR + AP ++S PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229
Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVE 285
+ GFVTFV+F RH + + + ++ F + +H+K S+ +MH RMR+RV
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVA 289
Query: 286 SMIRTLDRAKPDAEKLKKSTSNKSFKR 312
+ L+RAKPD E +K+ + +SF R
Sbjct: 290 DFQKVLNRAKPDVELERKTATGRSFVR 316
>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|D Chain D, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|D Chain D, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|D Chain D, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|D Chain D, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|D Chain D, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|D Chain D, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|D Chain D, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|D Chain D, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|D Chain D, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|D Chain D, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 300
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 163/316 (51%), Gaps = 25/316 (7%)
Query: 1 MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXX 57
M+LL+ ++R + E L + +N +K V+ + +FD V YH+ NP+
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHIS----NPNGDKTKVM 56
Query: 58 XXXXXXETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
F L GA E +K YG+ L P G+N++L +L LP + K
Sbjct: 57 VSISLK---FYKELQAHGADELLKRVYGSY---LVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
+++ + ++ + V K+ + + + + +R E+ ++ + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
F F D D V+ F+QEF E RR + + AP ++S PPLELK + + N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAK 295
++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++ L+RA+
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRAR 281
Query: 296 PDAEKLK-KSTSNKSF 310
PDAEK + K+ + K+F
Sbjct: 282 PDAEKKEMKTITGKTF 297
>pdb|1YYC|A Chain A, Solution Structure Of A Putative Late Embryogenesis
Abundant (Lea) Protein At2g46140.1
Length = 174
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 3 LLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPH 50
LL F E L N +VD+ V D V YH +V++KNP+
Sbjct: 27 LLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPY 74
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 97 FNLTLKLNLSKLPPNEE-------NKHALLVKIASVREVVLGAPLRVVLKHLASKTVA 147
F +TL+L+ K PP EE NK AL+ + V + + G L +LA+ ++
Sbjct: 284 FEITLELSCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKGMVLDQNYNNLANAVIS 341
>pdb|3ACB|A Chain A, Crystal Structure Of Hypoxanthine-Guanine
Phosphoribosyltransferase From Thermus Thermophilus Hb8
pdb|3ACC|A Chain A, Crystal Structure Of Hypoxanthine-Guanine
Phosphoribosyltransferase With Gmp From Thermus
Thermophilus Hb8
pdb|3ACD|A Chain A, Crystal Structure Of Hypoxanthine-Guanine
Phosphoribosyltransferase With Imp From Thermus
Thermophilus Hb8
Length = 181
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 182 NDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVI 241
D +DT L S+L +++EAR+ A + A L S +E VP ++ F I
Sbjct: 102 EDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVE---VPIH-------YLGFEI 151
Query: 242 FPRHVEGKKLDRTVWN 257
+V G LDR ++
Sbjct: 152 EDAYVYGYGLDRAQFD 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,539,067
Number of Sequences: 62578
Number of extensions: 307287
Number of successful extensions: 624
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 5
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)