Query 020327
Match_columns 327
No_of_seqs 127 out of 197
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:13:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_D Actin-related protein 2 100.0 3E-130 1E-134 936.3 20.2 302 1-313 1-317 (317)
2 1k8k_D P34, ARP2/3 complex 34 100.0 2E-127 7E-132 913.6 23.1 294 1-312 1-299 (300)
3 3dwl_F Actin-related protein 2 93.6 0.29 1E-05 42.9 8.6 119 151-290 48-167 (168)
4 1k8k_F P20, ARP2/3 complex 20 92.5 0.36 1.2E-05 42.4 7.5 118 151-289 48-166 (168)
5 3fds_D DNA polymerase sliding 62.3 19 0.00065 32.0 7.1 97 130-244 136-244 (245)
6 3ifv_A PCNA; processivity fact 59.3 28 0.00095 31.0 7.7 99 131-244 135-243 (247)
7 3dwl_F Actin-related protein 2 57.1 8.9 0.0003 33.6 3.8 48 50-108 68-123 (168)
8 1k8k_F P20, ARP2/3 complex 20 51.1 14 0.00046 32.5 4.0 56 50-108 68-123 (168)
9 3lx2_A DNA polymerase sliding 50.6 36 0.0012 30.4 7.0 100 131-248 138-251 (259)
10 3p91_A Proliferating cell nucl 32.5 90 0.0031 28.0 6.6 99 130-245 144-257 (265)
11 3fds_C DNA polymerase sliding 25.3 2.6E+02 0.009 24.8 8.3 99 129-244 138-248 (249)
12 2lma_A THP5 peptide; CD4+, imm 23.5 17 0.0006 22.1 0.1 21 78-98 4-24 (26)
13 3ogk_Q JAZ1 incomplete degron 20.4 50 0.0017 19.7 1.6 20 191-210 2-21 (22)
No 1
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-130 Score=936.25 Aligned_cols=302 Identities=32% Similarity=0.616 Sum_probs=250.0
Q ss_pred CcccccccHHHHHHHHHhhhccCCCcccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCccHHHHHH
Q 020327 1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIK 80 (327)
Q Consensus 1 MilLe~~N~ii~~~L~~~~~~~~kp~~id~~~~DFD~v~yHis~~~~~k~~l~lSislk~~~~~~~~~~~l~~Ga~e~Lk 80 (327)
|||||++|+||+++|++|+. +++|.+||++++|||||+||||++ ++|++|+|||++|| |.++. +||+.|+||
T Consensus 1 MilLe~~N~ii~~~L~~~~~-~~~p~~~d~~~~DFDgv~yHis~p-~~k~~l~lSi~~~~--~~~l~----~~Ga~e~Lk 72 (317)
T 3dwl_D 1 MLSLDYNNIFIYELLTERFS-SENPSSIDQVVTDFDGVTFHISTP-EEKTKILISLSMKC--YPELV----NYGTLDLLK 72 (317)
T ss_dssp CCSCCSSCHHHHHHHHHHTT-SCC-----CEEEETTTEEEECCCC----CCCCEEEECSS--HHHHH----TTTHHHHHH
T ss_pred CcccccccHHHHHHHHHHhc-cCCCCccceeEEcCCCcEEEEeCC-CCCceEEEEEeccc--hHHHH----hcCHHHHHH
Confidence 99999999999999999996 478999999999999999999996 89999999999999 66666 599999999
Q ss_pred HhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHhHHHHHhhhHHHHHHHHHh---cc-----Ccc-----
Q 020327 81 AAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLA---SK-----TVA----- 147 (327)
Q Consensus 81 ~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~lKrn~laApF~~~f~~l~---~~-----~~~----- 147 (327)
++||+|+ .+||+||||||++||++||+++++|+++|+++|+||||||||||+++|+..+ +. ..+
T Consensus 73 ~~Yg~~~---~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aapFe~~f~~~~~L~~~~~~~~~~~~~~~~ 149 (317)
T 3dwl_D 73 QIYGAYV---HEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDK 149 (317)
T ss_dssp HHSTTTE---ECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSHHHHHHHTHHHHCC----------CCCCH
T ss_pred HHhcccc---CCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccccccccccccc
Confidence 9999997 5799999999999999999999999999999999999999999999997543 21 011
Q ss_pred -cccCcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCC-CCCCcccCCC
Q 020327 148 -SDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225 (327)
Q Consensus 148 -~~~~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S-~~PPlEL~~~ 225 (327)
.+++++++|+||+||+|||+|++|||||||||+|+|+||+||||||||||+||||++++|+||||+|| ++||+||+|+
T Consensus 150 ~~~~~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~ 229 (317)
T 3dwl_D 150 QATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229 (317)
T ss_dssp HHHTTTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSC
T ss_pred cccCCCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCC
Confidence 12568999999999999999999999999999999999999999999999999999779999999999 7999999999
Q ss_pred CCcccCCCeeEEEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHHhhhCCCcccccccc
Q 020327 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDAEKLKKST 305 (327)
Q Consensus 226 ~~~~~~~n~gyVTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lkvLnRAkpe~~~ekkT~ 305 (327)
++++.++|+|||||||||||++++.+++|||+|++|||||||||||||||||||||+||++|||||||||||.++||||+
T Consensus 230 ~~~~~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vLnrAkpe~~~ekKT~ 309 (317)
T 3dwl_D 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVELERKTA 309 (317)
T ss_dssp C-------CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCC------
T ss_pred CccccCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 99988999999999999999999888999999999999999999999999999999999999999999999988899999
Q ss_pred ccchhhhc
Q 020327 306 SNKSFKRL 313 (327)
Q Consensus 306 sGr~f~~~ 313 (327)
|||||+|.
T Consensus 310 sGrtf~r~ 317 (317)
T 3dwl_D 310 TGRSFVRA 317 (317)
T ss_dssp --------
T ss_pred CCceeecC
Confidence 99999873
No 2
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Probab=100.00 E-value=1.9e-127 Score=913.57 Aligned_cols=294 Identities=31% Similarity=0.603 Sum_probs=262.6
Q ss_pred CcccccccHHHHHHHHHhhhc---cCCCcccceEEeecCceEEEEecCCCCCceEEEEEeeCCCCCccccccCCCccHHH
Q 020327 1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE 77 (327)
Q Consensus 1 MilLe~~N~ii~~~L~~~~~~---~~kp~~id~~~~DFD~v~yHis~~~~~k~~l~lSislk~~~~~~~~~~~l~~Ga~e 77 (327)
|||||++|+||+++|++|+.+ +++|.++|++++|||||+||||+++++|++|+|||++|| |.++. +|||.|
T Consensus 1 MilLe~~n~ii~~~L~~r~~~~~~~~~p~~~d~~~~DFDgv~yHis~~~~dk~~i~vSisl~~--~~~L~----~~Ga~e 74 (300)
T 1k8k_D 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF--YKELQ----AHGADE 74 (300)
T ss_dssp CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT--HHHHH----TTTHHH
T ss_pred CccccccCHHHHHHHHHHHhhhccCCCCCccceEEecCCCcEEEeecCCCCCcEEEEEEEccc--hHHHh----hcCHHH
Confidence 999999999999999999987 468999999999999999999999999999999999999 66665 599999
Q ss_pred HHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHhHHHHHhhhHHHHHHHHHhccCcccccCcceEEe
Q 020327 78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV 157 (327)
Q Consensus 78 ~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~~li~~~s~lKrn~laApF~~~f~~l~~~~~~~~~~~~~~i~ 157 (327)
+|+++||+|+ .+||+|||+||.+||++||++++ ++|+++|+||||||||||+++|+ +++. +++++.+++|+
T Consensus 75 ~Lk~~Yg~~v---~~pe~Gy~~tL~idl~~lp~~~~---~li~kia~LKrn~laapF~~~F~-~~~~--~~~~~~~~~I~ 145 (300)
T 1k8k_D 75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPASKD---SIVHQAGMLKRNCFASVFEKYFQ-FQEE--GKEGENRAVIH 145 (300)
T ss_dssp HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSCHH---HHHHHHHTHHHHHHHHHHHHHHH-HHHH--TCCSCCCEEEE
T ss_pred HHHHHccccc---cCCCCCccEEEEEEHHHCCcCHH---HHHHHHHHHHHHHHHHHHHHHHH-HHhc--ccCCCceEEee
Confidence 9999999997 37999999999999999999944 59999999999999999999999 4433 33444559999
Q ss_pred ccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCC-CCCcccCCCCCcccCCCeeE
Q 020327 158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF 236 (327)
Q Consensus 158 YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~-~PPlEL~~~~~~~~~~n~gy 236 (327)
||++|+|||+|++|||||||||+|+|+||+||||||||||+||||+ +++||||+||+ +||+||+|++ ...++|+||
T Consensus 146 YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~--~~~APqvlfs~~~PPlEL~~~~-~~~~~n~gy 222 (300)
T 1k8k_D 146 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTAPQVLFSHREPPLELKDTD-AAVGDNIGY 222 (300)
T ss_dssp EETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTSCEEEEEESSCCGGGTTTT-CCCSTTEEE
T ss_pred cCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhc--cCCCCceecCCCCCChHHcCCc-cccCCCeEE
Confidence 9999999999999999999999999999999999999999999999 99999999997 9999999987 556899999
Q ss_pred EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHHhhhCCCc-cccccccccchhhh
Q 020327 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRTLDRAKPDA-EKLKKSTSNKSFKR 312 (327)
Q Consensus 237 VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lkvLnRAkpe~-~~ekkT~sGr~f~~ 312 (327)
|||||||||++++++++|||+||+|||||||||||||||||||||+||++|||||||||||. ++||||+|||||++
T Consensus 223 VTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLnRAkpe~~~~ekkT~sGrtf~~ 299 (300)
T 1k8k_D 223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSS 299 (300)
T ss_dssp EEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC----------------
T ss_pred EEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeccCceEec
Confidence 99999999999999999999999999999999999999999999999999999999999996 58999999999986
No 3
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.61 E-value=0.29 Score=42.88 Aligned_cols=119 Identities=19% Similarity=0.311 Sum_probs=96.7
Q ss_pred CcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCccc
Q 020327 151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL 230 (327)
Q Consensus 151 ~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~~PPlEL~~~~~~~~ 230 (327)
-.++.|..-+.|.++|.|+-+.|.|.|...-.|+-++++.+-|+. |.-.|-. +=+|| |-.|-.
T Consensus 48 l~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RAe-----~f~IL---------RrkPv~-- 110 (168)
T 3dwl_F 48 LKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRAE-----SFFIL---------RRKPVQ-- 110 (168)
T ss_dssp CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGTT-----TSTTB---------CSSCCT--
T ss_pred cCceEEeecCCceEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhccc-----ceEEe---------eeCCcC--
Confidence 357899999999999999999999999999999999999999976 4444321 22233 222211
Q ss_pred CCCeeE-EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 020327 231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIRT 290 (327)
Q Consensus 231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lkv 290 (327)
|| |||.+.-.|++.--+.+-|+.|.+|=.-+---|.--|-.+.+|=|.=.++||+-
T Consensus 111 ----GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~~ 167 (168)
T 3dwl_F 111 ----GYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSC 167 (168)
T ss_dssp ----TCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred ----CcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 899999999987667899999999999999999999999999999888888874
No 4
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=92.49 E-value=0.36 Score=42.39 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=95.6
Q ss_pred CcceEEeccCCceEEEeecCCeeEEEEeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCccCCCCCCcccCCCCCccc
Q 020327 151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL 230 (327)
Q Consensus 151 ~~~~~i~YR~dE~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqVl~S~~PPlEL~~~~~~~~ 230 (327)
-.++.|...+.|..+|.|+-+.|.|.+.....|+-+.++.+-|+. |.-.|-. +=+||-. .|-.
T Consensus 48 l~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RAe-----~f~ILRr---------kPv~-- 110 (168)
T 1k8k_F 48 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILRR---------KPVE-- 110 (168)
T ss_dssp CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBCS---------SCCT--
T ss_pred ccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhccc-----ceEEeee---------CCcC--
Confidence 357899989999999999999999999999999999999999976 5444432 2233333 2211
Q ss_pred CCCeeE-EEEEeeccccCccchhhhhHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 020327 231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESMIR 289 (327)
Q Consensus 231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~l~~FR~YlhYHIKcSKaYmHsRMR~Rv~~~lk 289 (327)
|| |||.+.--|++.--+.+-|+.|.+|=.-.---|.--|-.+-+|=|.=.++|++
T Consensus 111 ----GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~A~~fl~ 166 (168)
T 1k8k_F 111 ----GYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK 166 (168)
T ss_dssp ----TCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----CccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 33 89999999998766789999999999998888988999999999888888875
No 5
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=62.32 E-value=19 Score=31.98 Aligned_cols=97 Identities=13% Similarity=0.271 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHhccCcccccCcceEEeccCCceEEEeecCC--eeEEEEe------cee-cCCccchhhhHHHHHHHHH
Q 020327 130 LGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAE--KVTVVFP------MRF-NDSIDTVLATSFLQEFVEA 200 (327)
Q Consensus 130 laApF~~~f~~l~~~~~~~~~~~~~~i~YR~dE~iyi~~~~D--rVTVIFs------t~F-~D~~D~vigkvFLQEFvda 200 (327)
-+..|.++++.++.-+ ..+.|.--++ .+.+.+++| .+.+.++ ..+ .++....|.--+|.+|..|
T Consensus 136 ~s~~f~~~i~~~~~~s------~~V~i~~~~~-~l~~s~~gd~g~~~~~l~~~~~~~~~~~~e~~~~~F~~~YL~~~~ka 208 (245)
T 3fds_D 136 LTITFADIIDELSDLG------EVLNIHSKEN-KLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKM 208 (245)
T ss_dssp EHHHHHHHHHHHTTTC------SEEEEEEETT-EEEEEEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGG
T ss_pred EHHHHHHHHHHHHhcC------CEEEEEEeCC-EEEEEEEecCcEEEEEEcCCCCceEEEecceEEEEEEHHHHHHHhhh
Confidence 3667777777554321 2466665554 577777764 6888876 345 6677788888888877755
Q ss_pred hhhcCCCCCCCccCC--CCCCcccCC-CCCcccCCCeeEEEEEeecc
Q 020327 201 RRTAGLNNAPLCMWS--SSPPLELKG-VPSETLSANAGFVTFVIFPR 244 (327)
Q Consensus 201 Rr~~~~~~APqVl~S--~~PPlEL~~-~~~~~~~~n~gyVTFvLFpr 244 (327)
++.+.+|..+ .+-|+-|+= + ++.||++|.|=||
T Consensus 209 -----~~~s~~V~i~~~~~~Pl~l~~~i------~~~g~~~y~laPr 244 (245)
T 3fds_D 209 -----RRASDSMELYFGSQIPLKLRFKL------PQEGYGDFYIAPR 244 (245)
T ss_dssp -----GGTCSEEEEEECTTSCEEEEEEC------STTCEEEEEECCC
T ss_pred -----cccCCEEEEEecCCccEEEEEEe------CCCeEEEEEEeec
Confidence 4557788544 456887762 2 2368999999997
No 6
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=59.33 E-value=28 Score=30.97 Aligned_cols=99 Identities=17% Similarity=0.354 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHhccCcccccCcceEEeccC-CceEEEeecCC--eeEEEEe----cee-cCCccchhhhHHHHHHHHHhh
Q 020327 131 GAPLRVVLKHLASKTVASDIDQLLALVHRP-KESFFLIPQAE--KVTVVFP----MRF-NDSIDTVLATSFLQEFVEARR 202 (327)
Q Consensus 131 aApF~~~f~~l~~~~~~~~~~~~~~i~YR~-dE~iyi~~~~D--rVTVIFs----t~F-~D~~D~vigkvFLQEFvdaRr 202 (327)
++.|.++.+.++.-+ ..+.|.--+ ++.+.+.+++| .+.+.++ ..+ .++....|.--+|.+|..|
T Consensus 135 s~~f~~~i~~~~~~s------d~V~i~~~~~~~~~~~s~~gd~g~~~~~l~~~~~~~~~~e~~~~~F~~~YL~~~~Ka-- 206 (247)
T 3ifv_A 135 GTHLDRGIKAADMVS------DHIRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKA-- 206 (247)
T ss_dssp HHHHHHHHHHHHHHC------SEEEEEEETTTTEEEEEEECSSCEEEEEECGGGCSEEEECCCEEEEEHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhC------CEEEEEEECCCCEEEEEEEecceEEEEEECCCceEEEecCeEEEEEeHHHHHHhhhh--
Confidence 666777776544211 246666653 56788877765 6777776 234 5567778888888888866
Q ss_pred hcCCCCCCCccCC--CCCCcccCCCCCcccCCCeeEEEEEeecc
Q 020327 203 TAGLNNAPLCMWS--SSPPLELKGVPSETLSANAGFVTFVIFPR 244 (327)
Q Consensus 203 ~~~~~~APqVl~S--~~PPlEL~~~~~~~~~~n~gyVTFvLFpr 244 (327)
+..+.+|..+ .+-|+.|+=- .+.+.|||+|.|=||
T Consensus 207 ---~~~s~~V~i~~~~~~Pl~l~~~----i~~~~g~~~~~lAPr 243 (247)
T 3ifv_A 207 ---IPTDAEVTVELGEEFPVKLHYQ----IAEGMGTITYMLAPR 243 (247)
T ss_dssp ---SCTTCEEEEEECBSSCEEEEEE----EGGGTEEEEEEECCC
T ss_pred ---ccCCCEEEEEecCCccEEEEEE----EcCCcEEEEEEEeec
Confidence 5567888544 5668888631 222468999999997
No 7
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=57.12 E-value=8.9 Score=33.59 Aligned_cols=48 Identities=8% Similarity=0.173 Sum_probs=31.2
Q ss_pred ceEEEEEeeCCCCCccccccCCCccHHHHHHHhhc--------ccccccCCCCCCcceEEEEcCCCC
Q 020327 50 HIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYG--------NVVQILDPPRDGFNLTLKLNLSKL 108 (327)
Q Consensus 50 ~~l~lSislk~~~~~~~~~~~l~~Ga~e~Lk~~Yg--------~~~~i~~~pE~GYdvTL~iDL~~l 108 (327)
|-+.|||.+|- .| + ....|-++|- .+.-..-.|=+|||+|.+|.-..+
T Consensus 68 NSvRvSi~ikq---aD----e----ie~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~H~ 123 (168)
T 3dwl_F 68 NSVRFSIRIKQ---VD----E----IERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHT 123 (168)
T ss_dssp SEEEEEEECCC---CS----S----HHHHHHHHHHHHHGGGTTTSTTBCSSCCTTCSEEEEEETTHH
T ss_pred ceEEEEEEehh---hc----h----HHHHHHHHHHHHHHhcccceEEeeeCCcCCcceeeeehHHHH
Confidence 67899999984 22 2 2334444443 333233568899999999988765
No 8
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=51.12 E-value=14 Score=32.48 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=30.5
Q ss_pred ceEEEEEeeCCCCCccccccCCCccHHHHHHHhhcccccccCCCCCCcceEEEEcCCCC
Q 020327 50 HIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKL 108 (327)
Q Consensus 50 ~~l~lSislk~~~~~~~~~~~l~~Ga~e~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~l 108 (327)
|-+.|||.+|- .|-...-|-+--.-+|..-=+.+.-..-.|=+|||+|.+|.-..+
T Consensus 68 NSvRvSi~ikq---~DeiE~iL~~kf~rFl~~RAe~f~ILRrkPv~GYDISFLItn~h~ 123 (168)
T 1k8k_F 68 NSVRVSIAVKQ---ADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHT 123 (168)
T ss_dssp SEEEEEEECCC---CSHHHHHHHHHHHHHHHHTTTTSTTBCSSCCTTCSEEEEEEHHHH
T ss_pred ceEEEEEEEcc---cChHHHHHHHHHHHHHHhcccceEEeeeCCcCCccchhhhhhhhH
Confidence 67889988884 111110011122222222223333233568899999999987655
No 9
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=50.59 E-value=36 Score=30.41 Aligned_cols=100 Identities=23% Similarity=0.386 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHhccCcccccCcceEEeccCCceEEEeecC--CeeEEEEe------ceec---CCccchhhhHHHHHHHH
Q 020327 131 GAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQA--EKVTVVFP------MRFN---DSIDTVLATSFLQEFVE 199 (327)
Q Consensus 131 aApF~~~f~~l~~~~~~~~~~~~~~i~YR~dE~iyi~~~~--DrVTVIFs------t~F~---D~~D~vigkvFLQEFvd 199 (327)
+..|.++.+.++.-+ +.+.|.--+ +.+.+.+.+ +.+.+.++ ..|+ ++....|.--+|.+|..
T Consensus 138 s~~f~~~i~~~~~~s------d~V~i~~~~-~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~K 210 (259)
T 3lx2_A 138 AGALKRAVKAAKLVS------DSIYFMATP-EKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILR 210 (259)
T ss_dssp HHHHHHHHHHHHHHC------SEEEEEECS-SCEEEEEECSSCEEEEEECTTSTTEEEEEESSSCEEEEEEHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC------CEEEEEEEC-CEEEEEEEecCcEEEEEEcCCCCceEEEEecCceEEEEEEHHHHHhhhc
Confidence 556666665444211 245555544 467777765 46788885 3555 67777888888887775
Q ss_pred HhhhcCCCCCCCccC--CCCCCcccC-CCCCcccCCCeeEEEEEeeccccCc
Q 020327 200 ARRTAGLNNAPLCMW--SSSPPLELK-GVPSETLSANAGFVTFVIFPRHVEG 248 (327)
Q Consensus 200 aRr~~~~~~APqVl~--S~~PPlEL~-~~~~~~~~~n~gyVTFvLFprH~~~ 248 (327)
| ++.+.+|.. +.+-|+-|+ .+. +.||++|.|-||--.|
T Consensus 211 a-----~~~s~~V~l~~~~~~Pl~l~~~i~------~~g~~~y~laP~~~~~ 251 (259)
T 3lx2_A 211 S-----LADADEVIIRFGFDIPLLLKYMVR------DAGEVSFLIAPRVEEG 251 (259)
T ss_dssp S-----SCTTSEEEEEECTTSCEEEEEEET------TTEEEEEEECCCC---
T ss_pred c-----ccCCCeEEEEeCCCCCEEEEEEeC------CCeEEEEEEccccCCC
Confidence 4 556778854 456688886 331 3689999999987655
No 10
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=32.47 E-value=90 Score=27.99 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHhccCcccccCcceEEeccCCceEEEeecCC--eeEEEEec---------eec--CCccchhhhHHHHH
Q 020327 130 LGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAE--KVTVVFPM---------RFN--DSIDTVLATSFLQE 196 (327)
Q Consensus 130 laApF~~~f~~l~~~~~~~~~~~~~~i~YR~dE~iyi~~~~D--rVTVIFst---------~F~--D~~D~vigkvFLQE 196 (327)
-++.|.++.+.++.-+ . ..+.|.--+ +.+.+.+.+| ++.+.++. .|. ++....|.--+|..
T Consensus 144 ~s~~f~~~i~~~~~~s--~---d~V~i~~~~-~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~~~e~~~~~F~~~YL~~ 217 (265)
T 3p91_A 144 SSAEFLKITKDFSALG--D---DSITIGCTK-NEVTLTTKGAMCETCMTLSALENVDSNGLQIEHNKDVTASFALKQISE 217 (265)
T ss_dssp EHHHHHHHHHHHHHHC--C---SEEEEEECS-SEEEEEEECSSCEEEEEEEC-------CCEEEESSCEEEEEEHHHHHH
T ss_pred EHHHHHHHHHHHHhCC--C---CEEEEEEEC-CEEEEEEEecCceEEEEEecCCCCCCceEEEEcCCcEEEEEEHHHHHH
Confidence 3666777776544211 0 245665544 4788877764 78888863 344 67788888888888
Q ss_pred HHHHhhhcCCCCCCCcc--CCCCCCcccCCCCCcccCCCeeEEEEEeeccc
Q 020327 197 FVEARRTAGLNNAPLCM--WSSSPPLELKGVPSETLSANAGFVTFVIFPRH 245 (327)
Q Consensus 197 FvdaRr~~~~~~APqVl--~S~~PPlEL~~~~~~~~~~n~gyVTFvLFprH 245 (327)
|..| +.-|.+|. |+.+-|+.|+=- . +.|||+|.|=||=
T Consensus 218 ~~Ka-----~~ls~~V~i~~~~~~Pl~l~~~----i--~~g~~~f~lAPri 257 (265)
T 3p91_A 218 FAKS-----APLADNVKLSLSGQAPLIMEFK----G--EACVLKFYLAPKF 257 (265)
T ss_dssp HGGG-----GGGCSEEEEEECSSSCEEEEEE----E--TTEEEEEEECCBC
T ss_pred hhcc-----cccCCEEEEEeCCCccEEEEEE----E--CCEEEEEEEcCCC
Confidence 8755 44477885 445668888642 2 3589999999985
No 11
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=25.27 E-value=2.6e+02 Score=24.79 Aligned_cols=99 Identities=12% Similarity=0.196 Sum_probs=59.8
Q ss_pred HhhhHHHHHHHHHhccCcccccCcceEEeccCCceEEEeecCC--eeEEEEe-----ce--ecCCccchhhhHHHHHHHH
Q 020327 129 VLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAE--KVTVVFP-----MR--FNDSIDTVLATSFLQEFVE 199 (327)
Q Consensus 129 ~laApF~~~f~~l~~~~~~~~~~~~~~i~YR~dE~iyi~~~~D--rVTVIFs-----t~--F~D~~D~vigkvFLQEFvd 199 (327)
+-++.|.++.+.+..-+ ..+.|.--++ .+++...+| ...+.++ +. -+++....|+--.|-.|..
T Consensus 138 m~s~~f~~~~~dl~~~s------d~v~i~~~~~-~~~f~~~gd~~~~~~~~~~~~~l~~~~~~~~~~~~fsl~yL~~~~K 210 (249)
T 3fds_C 138 TDESVLNVIAADVTLVG------EEMRISTEED-KIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVK 210 (249)
T ss_dssp ECHHHHHHHHHHHHHHC------SEEEEEEETT-EEEEEEEETTEEEEEEEEETBEESEEEESSCCEEEEEHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHhC------CEEEEEEECC-EEEEEEEecCcEEEEEEcCCCCcEEEEcCCceEEEEEHHHHHHHHh
Confidence 44778888887665321 1244444333 444444444 3333331 12 2456667777778888886
Q ss_pred -HhhhcCCCCCCCcc--CCCCCCcccCCCCCcccCCCeeEEEEEeecc
Q 020327 200 -ARRTAGLNNAPLCM--WSSSPPLELKGVPSETLSANAGFVTFVIFPR 244 (327)
Q Consensus 200 -aRr~~~~~~APqVl--~S~~PPlEL~~~~~~~~~~n~gyVTFvLFpr 244 (327)
| .+-|.+|. ++.+-|+.|+=- .+ +.|||+|.|=||
T Consensus 211 ~a-----~~ls~~V~i~~~~~~Pl~l~y~----i~-~~G~l~f~lAPr 248 (249)
T 3fds_C 211 GL-----RGFSAPTMVSFGENLPMKIDVE----AV-SGGHMIFWIAPR 248 (249)
T ss_dssp TT-----TTCCSCEEEEECTTCCEEEEEE----CT-TSCEEEEEECCB
T ss_pred hh-----cccCCEEEEEecCCcCEEEEEE----eC-CCcEEEEEEecc
Confidence 5 45677875 446889988653 11 258999999997
No 12
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=23.47 E-value=17 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.600 Sum_probs=15.7
Q ss_pred HHHHhhcccccccCCCCCCcc
Q 020327 78 AIKAAYGNVVQILDPPRDGFN 98 (327)
Q Consensus 78 ~Lk~~Yg~~~~i~~~pE~GYd 98 (327)
+|+.+|-+.+.++.|||-|..
T Consensus 4 ylqteyydvmtvisppefg~~ 24 (26)
T 2lma_A 4 YLQTEYYDVMTVISPPEFGXX 24 (26)
T ss_dssp THHHHHHTTSTTSSGGGGC--
T ss_pred cccceeeeeEEEeCCcccccc
Confidence 478889888877788988753
No 13
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=20.36 E-value=50 Score=19.74 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhhhcCCCCCC
Q 020327 191 TSFLQEFVEARRTAGLNNAP 210 (327)
Q Consensus 191 kvFLQEFvdaRr~~~~~~AP 210 (327)
|.=||-|.+-||......||
T Consensus 2 k~SLqRFleKRk~R~~~~~P 21 (22)
T 3ogk_Q 2 RASLHRFLEKRKDRVTSKAP 21 (26)
T ss_pred chhHHHHHHHHHHHhhccCC
Confidence 34589999999964344555
Done!