Query 020328
Match_columns 327
No_of_seqs 62 out of 64
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 8.7E-59 1.9E-63 394.7 13.9 119 93-211 7-126 (126)
2 PF10805 DUF2730: Protein of u 97.0 0.0017 3.7E-08 54.0 6.3 88 94-207 9-98 (106)
3 PRK10884 SH3 domain-containing 95.7 0.33 7.1E-06 45.1 13.7 99 104-210 66-168 (206)
4 PF04375 HemX: HemX; InterPro 95.5 0.085 1.8E-06 52.1 9.6 44 176-219 95-144 (372)
5 KOG2629 Peroxisomal membrane a 94.8 0.094 2E-06 51.5 7.2 103 61-164 39-165 (300)
6 PF01519 DUF16: Protein of unk 94.2 0.3 6.6E-06 41.4 8.1 82 119-209 21-102 (102)
7 PF00038 Filament: Intermediat 93.3 3.1 6.6E-05 39.2 14.0 92 126-217 167-259 (312)
8 PF14712 Snapin_Pallidin: Snap 93.1 1.4 3E-05 34.9 9.9 72 136-208 15-91 (92)
9 PHA02562 46 endonuclease subun 92.9 1.2 2.5E-05 45.0 11.2 86 132-217 192-277 (562)
10 PRK15048 methyl-accepting chem 92.5 6.9 0.00015 39.7 16.1 21 241-261 524-544 (553)
11 PF04582 Reo_sigmaC: Reovirus 92.1 0.19 4.2E-06 49.9 4.6 86 125-210 67-155 (326)
12 PF11932 DUF3450: Protein of u 92.0 3.6 7.9E-05 38.3 12.6 78 135-212 24-101 (251)
13 TIGR00293 prefoldin, archaeal 91.8 0.43 9.2E-06 39.7 5.6 55 99-184 70-124 (126)
14 PRK14011 prefoldin subunit alp 91.7 0.6 1.3E-05 41.3 6.7 53 99-182 72-124 (144)
15 PF07889 DUF1664: Protein of u 91.5 3 6.5E-05 36.4 10.7 85 140-227 30-114 (126)
16 PRK11637 AmiB activator; Provi 91.2 2.3 5E-05 42.4 11.0 81 125-205 44-127 (428)
17 PF10158 LOH1CR12: Tumour supp 91.0 4.6 9.9E-05 35.3 11.3 48 124-171 27-74 (131)
18 PRK11637 AmiB activator; Provi 90.7 2.1 4.5E-05 42.7 10.2 78 131-208 43-123 (428)
19 smart00502 BBC B-Box C-termina 90.6 2.7 5.8E-05 33.3 8.9 32 212-243 85-117 (127)
20 PF07798 DUF1640: Protein of u 90.1 13 0.00028 33.2 13.7 97 120-219 43-144 (177)
21 PF12718 Tropomyosin_1: Tropom 89.7 5.4 0.00012 34.9 10.8 63 150-212 77-139 (143)
22 PF00015 MCPsignal: Methyl-acc 89.4 12 0.00026 32.3 12.6 15 61-75 45-59 (213)
23 PRK10920 putative uroporphyrin 89.3 1.3 2.9E-05 44.8 7.6 63 90-160 35-99 (390)
24 PF13747 DUF4164: Domain of un 89.1 4.6 0.0001 33.0 9.2 81 141-225 3-83 (89)
25 PF06419 COG6: Conserved oligo 88.8 3.3 7.2E-05 43.8 10.4 88 115-205 6-97 (618)
26 KOG0250 DNA repair protein RAD 88.5 5.7 0.00012 45.1 12.3 98 134-231 290-387 (1074)
27 PF02996 Prefoldin: Prefoldin 88.5 0.7 1.5E-05 37.6 4.2 56 99-185 61-116 (120)
28 PRK03947 prefoldin subunit alp 88.5 1.9 4.2E-05 36.6 7.0 56 99-185 78-133 (140)
29 PF00015 MCPsignal: Methyl-acc 88.5 15 0.00033 31.7 13.7 58 150-207 104-161 (213)
30 PF10805 DUF2730: Protein of u 88.4 2 4.3E-05 35.8 6.9 65 152-223 34-100 (106)
31 PRK06975 bifunctional uroporph 87.9 2.9 6.2E-05 44.6 9.3 33 144-176 376-408 (656)
32 PF11932 DUF3450: Protein of u 86.7 11 0.00023 35.2 11.3 76 130-205 33-108 (251)
33 PF06103 DUF948: Bacterial pro 86.5 6.1 0.00013 31.2 8.4 26 182-207 62-87 (90)
34 PF01442 Apolipoprotein: Apoli 85.9 7.4 0.00016 32.6 9.0 19 126-144 3-21 (202)
35 PRK13729 conjugal transfer pil 85.5 10 0.00022 39.8 11.4 50 161-210 70-119 (475)
36 PRK04778 septation ring format 85.2 16 0.00035 38.2 12.9 121 103-223 237-411 (569)
37 PF05478 Prominin: Prominin; 85.1 9.2 0.0002 41.7 11.5 33 130-162 189-222 (806)
38 PF05816 TelA: Toxic anion res 85.1 12 0.00025 36.7 11.2 100 122-221 85-202 (333)
39 PF04156 IncA: IncA protein; 84.9 17 0.00037 32.0 11.3 6 220-225 176-181 (191)
40 PHA02562 46 endonuclease subun 84.8 14 0.0003 37.4 11.9 50 157-206 334-383 (562)
41 PF10046 BLOC1_2: Biogenesis o 84.7 19 0.00041 29.5 10.6 67 144-210 26-95 (99)
42 PF10241 KxDL: Uncharacterized 84.1 9.4 0.0002 30.9 8.5 63 144-206 16-82 (88)
43 PF04513 Baculo_PEP_C: Baculov 83.8 17 0.00037 32.5 10.6 83 125-207 35-118 (140)
44 COG3883 Uncharacterized protei 83.8 7.1 0.00015 38.1 8.9 67 138-204 37-103 (265)
45 TIGR02132 phaR_Bmeg polyhydrox 83.4 4.7 0.0001 37.6 7.2 57 151-207 77-133 (189)
46 PF09730 BicD: Microtubule-ass 83.4 56 0.0012 36.0 16.3 102 127-236 372-473 (717)
47 COG4942 Membrane-bound metallo 83.0 12 0.00026 38.7 10.6 82 135-221 38-119 (420)
48 PRK10884 SH3 domain-containing 82.6 14 0.00031 34.4 10.2 69 125-193 97-165 (206)
49 smart00283 MA Methyl-accepting 82.6 33 0.00072 30.1 13.6 48 160-207 39-86 (262)
50 PRK15048 methyl-accepting chem 82.4 33 0.00072 34.9 13.5 60 138-197 269-328 (553)
51 PF05531 NPV_P10: Nucleopolyhe 81.2 5.8 0.00013 32.1 6.1 51 128-179 11-61 (75)
52 PF10498 IFT57: Intra-flagella 81.1 18 0.00038 36.5 10.8 78 121-198 227-318 (359)
53 PF00261 Tropomyosin: Tropomyo 81.1 23 0.0005 32.9 11.0 68 152-219 91-158 (237)
54 PF04100 Vps53_N: Vps53-like, 80.8 6.2 0.00014 39.6 7.6 43 188-230 57-99 (383)
55 PF05739 SNARE: SNARE domain; 80.7 12 0.00026 27.2 7.3 53 153-205 4-56 (63)
56 PF10226 DUF2216: Uncharacteri 80.5 53 0.0011 31.0 13.7 38 190-227 103-143 (195)
57 smart00806 AIP3 Actin interact 80.4 28 0.00061 36.2 12.2 94 124-217 176-301 (426)
58 PF10828 DUF2570: Protein of u 80.1 4 8.7E-05 34.0 5.1 17 97-113 9-25 (110)
59 PRK04778 septation ring format 80.1 31 0.00066 36.2 12.6 17 58-74 251-267 (569)
60 PRK09039 hypothetical protein; 80.1 21 0.00046 35.3 10.9 87 137-223 100-194 (343)
61 PF09177 Syntaxin-6_N: Syntaxi 79.7 7.5 0.00016 31.4 6.5 57 144-207 37-96 (97)
62 PRK13182 racA polar chromosome 79.6 8.1 0.00017 35.2 7.3 64 144-209 83-146 (175)
63 PF10186 Atg14: UV radiation r 79.0 40 0.00087 30.9 11.8 47 145-191 62-108 (302)
64 PF08614 ATG16: Autophagy prot 78.7 8.1 0.00018 34.8 7.0 96 114-209 71-172 (194)
65 smart00283 MA Methyl-accepting 77.9 48 0.001 29.1 13.7 73 125-197 137-209 (262)
66 PF05791 Bacillus_HBL: Bacillu 77.5 27 0.00058 31.5 10.0 89 122-210 78-171 (184)
67 PF06103 DUF948: Bacterial pro 77.5 24 0.00052 27.8 8.6 27 119-145 17-43 (90)
68 PRK04406 hypothetical protein; 77.3 10 0.00023 30.1 6.5 46 146-191 4-49 (75)
69 PF04582 Reo_sigmaC: Reovirus 76.9 1.4 3.1E-05 43.9 1.8 56 174-231 98-155 (326)
70 PF05597 Phasin: Poly(hydroxya 76.9 20 0.00044 31.4 8.7 25 187-211 108-132 (132)
71 PF04102 SlyX: SlyX; InterPro 76.5 9.5 0.00021 29.5 5.9 52 151-209 2-53 (69)
72 cd00890 Prefoldin Prefoldin is 76.3 5.9 0.00013 32.4 5.0 42 144-185 85-126 (129)
73 cd00584 Prefoldin_alpha Prefol 76.1 6.1 0.00013 32.9 5.1 56 99-185 71-126 (129)
74 PRK11166 chemotaxis regulator 75.9 38 0.00083 32.1 10.8 114 124-237 26-168 (214)
75 PF12325 TMF_TATA_bd: TATA ele 75.8 24 0.00052 30.5 8.8 64 121-185 44-107 (120)
76 PF12718 Tropomyosin_1: Tropom 75.7 55 0.0012 28.7 12.3 90 128-221 17-106 (143)
77 PF10168 Nup88: Nuclear pore c 75.2 23 0.0005 38.7 10.4 37 146-182 558-594 (717)
78 TIGR01837 PHA_granule_1 poly(h 75.1 24 0.00051 30.0 8.5 63 147-209 53-117 (118)
79 COG1196 Smc Chromosome segrega 74.9 62 0.0013 36.8 14.0 25 185-209 874-898 (1163)
80 PF09602 PhaP_Bmeg: Polyhydrox 74.8 36 0.00079 31.3 10.0 88 110-207 14-104 (165)
81 PRK04863 mukB cell division pr 74.7 49 0.0011 39.2 13.4 80 128-207 314-402 (1486)
82 KOG1161 Protein involved in va 74.5 7.9 0.00017 38.6 6.2 71 125-196 45-115 (310)
83 PRK09793 methyl-accepting prot 74.3 80 0.0017 32.3 13.5 6 259-264 520-525 (533)
84 PF07295 DUF1451: Protein of u 74.3 13 0.00027 33.2 6.8 55 138-192 3-58 (146)
85 PF08317 Spc7: Spc7 kinetochor 74.2 41 0.00089 32.8 11.0 47 117-163 152-201 (325)
86 COG1579 Zn-ribbon protein, pos 74.1 15 0.00032 35.3 7.7 56 154-209 11-66 (239)
87 PRK09793 methyl-accepting prot 74.1 82 0.0018 32.2 13.5 30 150-179 279-308 (533)
88 PF07888 CALCOCO1: Calcium bin 73.9 30 0.00065 37.0 10.6 62 116-177 129-195 (546)
89 PF10146 zf-C4H2: Zinc finger- 73.8 84 0.0018 29.9 15.4 67 160-226 32-98 (230)
90 COG1196 Smc Chromosome segrega 73.8 64 0.0014 36.8 13.7 50 170-219 866-915 (1163)
91 COG4942 Membrane-bound metallo 73.8 43 0.00093 34.8 11.4 90 122-211 158-254 (420)
92 PF04380 BMFP: Membrane fusoge 73.6 12 0.00026 29.8 5.9 78 119-209 1-78 (79)
93 PF06008 Laminin_I: Laminin Do 73.0 45 0.00097 31.3 10.6 81 126-210 22-102 (264)
94 PF10498 IFT57: Intra-flagella 72.7 20 0.00043 36.1 8.6 27 115-141 232-258 (359)
95 COG3750 Uncharacterized protei 72.3 20 0.00044 29.7 7.0 49 147-199 12-60 (85)
96 PF03915 AIP3: Actin interacti 71.9 29 0.00063 35.8 9.7 86 141-226 201-306 (424)
97 KOG0972 Huntingtin interacting 71.7 38 0.00082 34.3 10.1 100 111-210 223-327 (384)
98 PRK00846 hypothetical protein; 71.6 24 0.00052 28.6 7.2 55 148-209 8-62 (77)
99 PF12732 YtxH: YtxH-like prote 71.5 15 0.00033 28.3 5.9 39 101-146 13-51 (74)
100 PF04740 LXG: LXG domain of WX 71.4 73 0.0016 28.2 11.6 87 125-211 65-168 (204)
101 PF04156 IncA: IncA protein; 71.4 72 0.0016 28.1 12.6 18 190-207 132-149 (191)
102 PF10046 BLOC1_2: Biogenesis o 71.3 55 0.0012 26.8 9.5 22 161-182 36-57 (99)
103 PF05531 NPV_P10: Nucleopolyhe 71.3 19 0.0004 29.2 6.5 15 190-204 44-58 (75)
104 PF14197 Cep57_CLD_2: Centroso 71.0 39 0.00085 26.6 8.2 66 143-208 2-67 (69)
105 PF04375 HemX: HemX; InterPro 70.9 13 0.00029 36.9 6.9 10 101-110 41-50 (372)
106 PF10073 DUF2312: Uncharacteri 70.9 14 0.0003 30.0 5.7 44 149-199 7-50 (74)
107 TIGR00833 actII Transport prot 70.3 46 0.00099 36.9 11.4 50 182-231 601-650 (910)
108 TIGR01916 F420_cofE F420-0:gam 70.1 3.3 7.2E-05 39.8 2.4 74 62-135 125-202 (243)
109 PF08317 Spc7: Spc7 kinetochor 70.1 1E+02 0.0023 30.0 12.7 32 135-166 152-183 (325)
110 PF02403 Seryl_tRNA_N: Seryl-t 69.2 21 0.00047 28.8 6.7 62 145-210 35-96 (108)
111 PRK15041 methyl-accepting chem 69.2 1.1E+02 0.0025 31.5 13.4 8 126-133 252-259 (554)
112 PF04129 Vps52: Vps52 / Sac2 f 69.0 53 0.0011 34.1 10.9 84 152-235 13-99 (508)
113 PF12128 DUF3584: Protein of u 68.2 57 0.0012 37.3 11.9 94 130-226 258-352 (1201)
114 PF06160 EzrA: Septation ring 68.2 23 0.0005 37.1 8.3 61 138-198 371-431 (560)
115 PF06120 Phage_HK97_TLTM: Tail 68.1 64 0.0014 32.1 10.8 44 134-177 54-98 (301)
116 PF14257 DUF4349: Domain of un 67.8 11 0.00025 35.0 5.4 52 154-205 140-193 (262)
117 PF15397 DUF4618: Domain of un 67.4 79 0.0017 30.9 11.1 87 134-223 62-148 (258)
118 PF15358 TSKS: Testis-specific 67.2 48 0.001 34.9 10.1 122 150-273 136-261 (558)
119 PF10883 DUF2681: Protein of u 67.1 4.6 0.0001 33.4 2.3 17 98-114 11-27 (87)
120 TIGR01000 bacteriocin_acc bact 66.9 49 0.0011 33.4 10.1 37 135-171 161-197 (457)
121 PF01442 Apolipoprotein: Apoli 66.7 76 0.0016 26.5 13.3 12 61-72 32-43 (202)
122 PF10018 Med4: Vitamin-D-recep 66.2 72 0.0016 28.8 10.0 89 135-234 9-99 (188)
123 TIGR00996 Mtu_fam_mce virulenc 66.1 1E+02 0.0022 28.8 11.4 8 61-68 135-142 (291)
124 PRK02224 chromosome segregatio 66.0 55 0.0012 35.4 10.7 29 136-164 163-198 (880)
125 PF04513 Baculo_PEP_C: Baculov 65.9 1E+02 0.0022 27.7 10.6 80 126-208 18-105 (140)
126 KOG4674 Uncharacterized conser 65.8 38 0.00082 40.9 10.0 23 135-157 805-827 (1822)
127 PF05008 V-SNARE: Vesicle tran 65.7 33 0.00072 26.2 6.8 50 127-179 2-51 (79)
128 PRK10698 phage shock protein P 65.2 59 0.0013 30.4 9.5 80 130-214 97-185 (222)
129 PF04799 Fzo_mitofusin: fzo-li 65.1 28 0.00062 32.0 7.2 64 139-209 102-165 (171)
130 TIGR03185 DNA_S_dndD DNA sulfu 65.1 88 0.0019 33.2 11.9 34 174-207 435-468 (650)
131 PF10168 Nup88: Nuclear pore c 64.9 81 0.0017 34.6 11.8 48 174-221 572-619 (717)
132 COG3074 Uncharacterized protei 64.9 68 0.0015 26.2 8.4 67 155-221 6-72 (79)
133 PRK02224 chromosome segregatio 64.9 1.5E+02 0.0033 32.1 13.8 6 8-13 25-30 (880)
134 smart00787 Spc7 Spc7 kinetocho 64.8 1.3E+02 0.0028 29.8 12.2 85 123-207 153-244 (312)
135 PF05701 WEMBL: Weak chloropla 64.8 1.2E+02 0.0025 31.8 12.5 43 168-210 282-324 (522)
136 PRK02119 hypothetical protein; 64.4 27 0.00059 27.6 6.1 36 150-185 6-41 (73)
137 TIGR00606 rad50 rad50. This fa 64.4 1.1E+02 0.0024 35.3 13.3 79 119-197 879-957 (1311)
138 TIGR03513 GldL_gliding gliding 64.3 1E+02 0.0023 29.1 10.9 89 117-207 103-191 (202)
139 KOG0161 Myosin class II heavy 64.1 53 0.0011 40.0 10.9 80 129-208 1362-1441(1930)
140 PRK13694 hypothetical protein; 64.0 31 0.00068 28.5 6.6 49 147-199 10-58 (83)
141 KOG0250 DNA repair protein RAD 64.0 63 0.0014 37.2 10.9 62 149-210 361-423 (1074)
142 PRK02793 phi X174 lysis protei 63.3 26 0.00056 27.6 5.8 52 150-208 5-56 (72)
143 COG1842 PspA Phage shock prote 63.3 88 0.0019 29.6 10.4 91 119-214 90-185 (225)
144 TIGR01843 type_I_hlyD type I s 63.3 1.4E+02 0.0031 28.6 12.7 15 61-75 86-100 (423)
145 TIGR03495 phage_LysB phage lys 63.0 14 0.0003 32.8 4.7 15 98-112 7-21 (135)
146 PF00261 Tropomyosin: Tropomyo 62.6 1.3E+02 0.0029 27.9 11.4 70 125-194 145-217 (237)
147 PRK09110 flagellar motor prote 62.5 51 0.0011 32.1 8.9 93 94-188 5-106 (283)
148 cd07912 Tweety_N N-terminal do 62.5 38 0.00083 34.9 8.4 83 99-186 93-184 (418)
149 PF06295 DUF1043: Protein of u 62.1 28 0.0006 29.9 6.3 38 139-176 29-66 (128)
150 PF03908 Sec20: Sec20; InterP 61.8 79 0.0017 25.3 8.5 60 138-201 4-63 (92)
151 cd00193 t_SNARE Soluble NSF (N 61.4 44 0.00095 23.3 6.3 42 153-194 6-47 (60)
152 COG3883 Uncharacterized protei 61.2 46 0.00099 32.6 8.3 56 155-210 33-88 (265)
153 PRK00295 hypothetical protein; 61.2 35 0.00076 26.6 6.1 50 151-207 3-52 (68)
154 cd00632 Prefoldin_beta Prefold 61.2 20 0.00044 29.2 5.1 37 146-182 63-99 (105)
155 PLN03094 Substrate binding sub 61.1 36 0.00077 34.6 7.8 25 135-159 293-317 (370)
156 PRK10698 phage shock protein P 61.0 1.3E+02 0.0029 28.0 11.1 41 172-212 97-137 (222)
157 KOG4117 Heat shock factor bind 61.0 49 0.0011 26.6 6.9 45 122-166 10-54 (73)
158 PF05667 DUF812: Protein of un 60.9 1E+02 0.0023 33.1 11.6 91 124-214 397-487 (594)
159 PRK03918 chromosome segregatio 60.9 1E+02 0.0022 33.1 11.6 12 153-164 640-651 (880)
160 PRK03918 chromosome segregatio 60.8 59 0.0013 34.9 9.8 63 136-198 159-224 (880)
161 COG5283 Phage-related tail pro 60.6 80 0.0017 36.9 11.0 91 126-216 27-120 (1213)
162 PF04912 Dynamitin: Dynamitin 59.9 45 0.00098 33.2 8.2 54 150-206 333-386 (388)
163 cd07596 BAR_SNX The Bin/Amphip 59.8 1.2E+02 0.0025 26.3 13.3 97 124-223 60-173 (218)
164 PF15188 CCDC-167: Coiled-coil 59.8 26 0.00057 28.9 5.4 62 132-208 2-63 (85)
165 PF04111 APG6: Autophagy prote 59.4 74 0.0016 31.2 9.5 70 139-208 64-133 (314)
166 PRK04325 hypothetical protein; 59.3 37 0.00081 26.8 6.1 52 150-208 6-57 (74)
167 COG3165 Uncharacterized protei 59.3 32 0.0007 32.6 6.7 67 138-210 133-201 (204)
168 TIGR03185 DNA_S_dndD DNA sulfu 59.2 88 0.0019 33.2 10.6 42 151-192 426-467 (650)
169 PRK10803 tol-pal system protei 59.1 36 0.00079 32.4 7.1 36 171-206 65-100 (263)
170 cd07667 BAR_SNX30 The Bin/Amph 58.7 76 0.0017 30.5 9.2 76 150-225 55-130 (240)
171 PRK00736 hypothetical protein; 58.7 37 0.0008 26.5 5.9 50 151-207 3-52 (68)
172 PF08700 Vps51: Vps51/Vps67; 58.6 80 0.0017 24.3 7.8 61 145-208 25-85 (87)
173 PF03670 UPF0184: Uncharacteri 58.4 40 0.00087 27.9 6.3 48 130-181 28-75 (83)
174 PRK04098 sec-independent trans 58.3 30 0.00065 31.5 6.1 57 124-181 23-79 (158)
175 PF11559 ADIP: Afadin- and alp 57.5 1.2E+02 0.0027 25.9 13.2 87 122-209 29-115 (151)
176 PF03148 Tektin: Tektin family 56.5 1.8E+02 0.0039 29.2 11.8 20 189-208 325-344 (384)
177 COG2900 SlyX Uncharacterized p 56.2 43 0.00094 27.1 6.0 37 148-184 3-39 (72)
178 PF00804 Syntaxin: Syntaxin; 56.0 90 0.0019 23.9 10.6 64 126-189 5-71 (103)
179 PF09748 Med10: Transcription 55.8 1E+02 0.0022 26.5 8.7 45 127-171 2-51 (128)
180 PF12352 V-SNARE_C: Snare regi 55.7 71 0.0015 23.6 6.9 48 154-201 9-56 (66)
181 TIGR02894 DNA_bind_RsfA transc 55.6 1.7E+02 0.0037 26.9 11.7 85 141-225 60-148 (161)
182 PF00435 Spectrin: Spectrin re 55.5 71 0.0015 23.6 6.9 89 115-206 13-105 (105)
183 PF10779 XhlA: Haemolysin XhlA 55.4 38 0.00083 26.2 5.5 15 150-164 3-17 (71)
184 PF05377 FlaC_arch: Flagella a 55.3 25 0.00054 27.0 4.3 11 155-165 2-12 (55)
185 TIGR00634 recN DNA repair prot 55.3 77 0.0017 33.1 9.3 108 115-226 249-370 (563)
186 KOG2180 Late Golgi protein sor 55.2 67 0.0015 35.7 9.0 70 144-223 38-107 (793)
187 PF03114 BAR: BAR domain; Int 55.2 73 0.0016 27.3 7.8 15 61-75 31-45 (229)
188 cd00179 SynN Syntaxin N-termin 55.1 1.2E+02 0.0025 25.5 8.8 18 128-145 6-23 (151)
189 PF00038 Filament: Intermediat 55.0 1.3E+02 0.0029 28.3 10.1 72 142-213 64-135 (312)
190 PF04344 CheZ: Chemotaxis phos 54.6 1.5E+02 0.0032 27.7 10.2 116 124-239 13-158 (214)
191 KOG3385 V-SNARE [Intracellular 54.4 33 0.00071 30.1 5.4 67 151-222 34-100 (118)
192 PF06009 Laminin_II: Laminin D 54.4 4.2 9E-05 35.0 0.0 57 157-213 21-84 (138)
193 PF13805 Pil1: Eisosome compon 54.4 2.3E+02 0.0049 28.0 12.1 80 127-210 95-180 (271)
194 PF10146 zf-C4H2: Zinc finger- 54.4 1.9E+02 0.0041 27.6 11.0 44 144-187 44-87 (230)
195 TIGR00414 serS seryl-tRNA synt 53.9 1.1E+02 0.0024 31.1 9.9 67 143-213 34-101 (418)
196 PF06148 COG2: COG (conserved 53.9 22 0.00048 30.1 4.3 48 125-172 66-113 (133)
197 PF05384 DegS: Sensor protein 53.3 48 0.001 30.0 6.5 50 153-202 6-55 (159)
198 PRK15422 septal ring assembly 53.2 1.1E+02 0.0025 25.1 8.0 67 155-221 6-72 (79)
199 PF06005 DUF904: Protein of un 52.8 65 0.0014 25.6 6.5 28 179-206 44-71 (72)
200 PRK05431 seryl-tRNA synthetase 52.7 67 0.0014 32.7 8.2 65 144-212 33-97 (425)
201 PF07851 TMPIT: TMPIT-like pro 52.7 1.1E+02 0.0024 30.9 9.5 22 296-317 239-260 (330)
202 KOG3067 Translin family protei 52.4 77 0.0017 30.3 7.9 101 132-232 6-111 (226)
203 PRK11032 hypothetical protein; 52.4 64 0.0014 29.4 7.2 52 137-191 12-67 (160)
204 KOG2196 Nuclear porin [Nuclear 52.0 1E+02 0.0022 30.2 8.8 70 141-210 84-156 (254)
205 cd07628 BAR_Atg24p The Bin/Amp 51.6 1E+02 0.0022 27.9 8.4 75 150-224 8-83 (185)
206 COG1463 Ttg2C ABC-type transpo 51.6 1.7E+02 0.0037 28.9 10.6 87 131-217 214-300 (359)
207 PF06156 DUF972: Protein of un 51.4 62 0.0014 27.4 6.6 30 123-152 3-32 (107)
208 TIGR02231 conserved hypothetic 51.3 1.6E+02 0.0034 30.4 10.7 84 126-209 69-173 (525)
209 PF07106 TBPIP: Tat binding pr 51.0 88 0.0019 27.4 7.8 24 185-208 113-136 (169)
210 KOG0860 Synaptobrevin/VAMP-lik 50.9 1.7E+02 0.0037 25.6 9.2 68 152-219 28-95 (116)
211 PF00509 Hemagglutinin: Haemag 50.9 15 0.00032 39.2 3.3 61 121-181 364-431 (550)
212 PF09304 Cortex-I_coil: Cortex 50.8 1E+02 0.0022 26.7 7.7 43 123-165 11-56 (107)
213 PLN03184 chloroplast Hsp70; Pr 50.6 1.5E+02 0.0032 32.0 10.7 23 141-163 561-583 (673)
214 PF15450 DUF4631: Domain of un 50.6 1.2E+02 0.0025 32.7 9.7 93 114-206 333-448 (531)
215 PRK06975 bifunctional uroporph 50.6 93 0.002 33.5 9.2 30 171-200 382-411 (656)
216 PF10779 XhlA: Haemolysin XhlA 50.4 55 0.0012 25.3 5.6 23 172-194 4-26 (71)
217 KOG0240 Kinesin (SMY1 subfamil 50.3 1.8E+02 0.004 31.7 11.1 117 107-223 372-498 (607)
218 KOG0976 Rho/Rac1-interacting s 50.2 1.5E+02 0.0033 33.9 10.7 96 130-225 279-374 (1265)
219 TIGR00383 corA magnesium Mg(2+ 50.2 1.2E+02 0.0025 28.7 8.9 85 124-208 145-243 (318)
220 PF03233 Cauli_AT: Aphid trans 49.9 34 0.00073 31.4 5.0 32 161-192 129-160 (163)
221 PF12777 MT: Microtubule-bindi 49.9 73 0.0016 31.3 7.7 57 126-182 219-278 (344)
222 KOG0994 Extracellular matrix g 49.8 2.1E+02 0.0045 34.2 11.9 14 62-75 1463-1476(1758)
223 COG5143 SNC1 Synaptobrevin/VAM 49.7 61 0.0013 30.4 6.8 56 133-188 127-185 (190)
224 PF04108 APG17: Autophagy prot 49.6 3E+02 0.0065 28.0 12.4 24 124-147 206-229 (412)
225 KOG0996 Structural maintenance 49.5 90 0.002 36.5 9.2 80 143-223 960-1040(1293)
226 PLN02867 Probable galacturonos 49.5 85 0.0018 33.7 8.5 41 164-207 117-157 (535)
227 KOG2391 Vacuolar sorting prote 49.3 1.9E+02 0.0041 29.7 10.6 68 117-185 218-285 (365)
228 PF10241 KxDL: Uncharacterized 49.2 1.3E+02 0.0029 24.2 7.9 54 133-186 23-76 (88)
229 cd07622 BAR_SNX4 The Bin/Amphi 49.0 2.2E+02 0.0047 26.3 10.5 69 110-190 58-126 (201)
230 PHA01750 hypothetical protein 49.0 58 0.0013 26.3 5.6 31 118-148 24-55 (75)
231 COG4717 Uncharacterized conser 49.0 1.4E+02 0.0031 34.0 10.5 119 120-239 735-862 (984)
232 PF10602 RPN7: 26S proteasome 49.0 48 0.001 29.6 5.9 58 143-202 4-61 (177)
233 PF06248 Zw10: Centromere/kine 48.9 2.1E+02 0.0045 30.0 11.3 78 128-207 29-108 (593)
234 PF02646 RmuC: RmuC family; I 48.8 92 0.002 30.2 8.2 17 275-291 100-116 (304)
235 PF10018 Med4: Vitamin-D-recep 48.8 91 0.002 28.2 7.7 24 140-163 3-26 (188)
236 COG0497 RecN ATPase involved i 48.8 99 0.0021 33.3 9.0 114 114-227 242-367 (557)
237 KOG0996 Structural maintenance 48.6 89 0.0019 36.6 9.0 82 137-218 396-477 (1293)
238 PF05266 DUF724: Protein of un 48.5 2.2E+02 0.0049 26.2 10.5 61 147-207 125-185 (190)
239 PF01996 F420_ligase: F420-0:G 48.5 4.4 9.6E-05 37.9 -0.8 73 62-135 133-210 (228)
240 PRK10869 recombination and rep 48.4 1.1E+02 0.0023 32.3 9.1 106 114-223 241-362 (553)
241 KOG4593 Mitotic checkpoint pro 48.4 2.2E+02 0.0048 31.7 11.6 99 124-222 115-213 (716)
242 cd07621 BAR_SNX5_6 The Bin/Amp 48.4 81 0.0018 29.9 7.5 77 117-196 48-125 (219)
243 TIGR02135 phoU_full phosphate 48.3 1.8E+02 0.0038 24.9 11.6 52 115-166 3-54 (212)
244 PF07888 CALCOCO1: Calcium bin 48.2 2.1E+02 0.0046 30.8 11.2 39 175-213 284-322 (546)
245 PF02994 Transposase_22: L1 tr 48.1 45 0.00097 33.4 6.1 20 191-210 168-187 (370)
246 PF15450 DUF4631: Domain of un 48.1 1.7E+02 0.0037 31.4 10.4 45 124-168 336-380 (531)
247 PF05791 Bacillus_HBL: Bacillu 48.1 1.8E+02 0.0038 26.3 9.4 73 131-203 106-178 (184)
248 PLN02678 seryl-tRNA synthetase 47.9 1.5E+02 0.0032 30.9 9.9 63 144-210 38-100 (448)
249 PF01544 CorA: CorA-like Mg2+ 47.9 2.1E+02 0.0046 25.8 11.0 58 119-176 116-174 (292)
250 TIGR00634 recN DNA repair prot 47.9 1.2E+02 0.0025 31.8 9.3 46 124-169 269-317 (563)
251 PF06730 FAM92: FAM92 protein; 47.9 2.3E+02 0.005 27.2 10.4 76 125-204 15-95 (219)
252 PF04799 Fzo_mitofusin: fzo-li 47.9 1E+02 0.0023 28.4 7.9 57 132-188 102-165 (171)
253 PF07439 DUF1515: Protein of u 47.8 95 0.0021 27.1 7.1 54 131-184 4-64 (112)
254 PF06160 EzrA: Septation ring 47.8 3.2E+02 0.007 28.9 12.5 80 131-210 410-494 (560)
255 PF05802 EspB: Enterobacterial 47.6 1.9E+02 0.004 29.2 10.0 64 146-209 147-210 (317)
256 PF02646 RmuC: RmuC family; I 47.5 80 0.0017 30.6 7.5 40 126-165 4-43 (304)
257 smart00787 Spc7 Spc7 kinetocho 47.2 3E+02 0.0065 27.3 12.5 36 175-210 205-240 (312)
258 PF06148 COG2: COG (conserved 47.1 48 0.001 28.0 5.3 40 152-191 61-100 (133)
259 PF09769 ApoO: Apolipoprotein 47.0 10 0.00022 33.1 1.3 21 7-27 96-116 (158)
260 COG1511 Predicted membrane pro 47.0 2E+02 0.0042 31.7 11.1 105 124-228 147-260 (780)
261 PF05701 WEMBL: Weak chloropla 46.9 3.7E+02 0.0079 28.2 13.3 71 155-225 367-437 (522)
262 KOG0804 Cytoplasmic Zn-finger 46.8 1.3E+02 0.0029 31.9 9.3 39 135-173 364-402 (493)
263 KOG1029 Endocytic adaptor prot 46.7 55 0.0012 37.0 6.9 66 131-196 436-501 (1118)
264 PRK13729 conjugal transfer pil 46.6 40 0.00086 35.6 5.6 53 158-210 58-112 (475)
265 PF03915 AIP3: Actin interacti 46.2 3.7E+02 0.008 28.0 12.8 67 120-186 205-272 (424)
266 TIGR03818 MotA1 flagellar moto 46.1 98 0.0021 30.2 7.9 93 94-188 5-106 (282)
267 KOG1298 Squalene monooxygenase 46.1 8.2 0.00018 40.3 0.6 18 9-26 48-69 (509)
268 COG1283 NptA Na+/phosphate sym 46.0 2.6E+02 0.0057 30.1 11.5 98 122-226 336-449 (533)
269 cd07651 F-BAR_PombeCdc15_like 45.9 2.4E+02 0.0053 25.9 12.6 38 116-153 95-132 (236)
270 PF06013 WXG100: Proteins of 1 45.9 1.1E+02 0.0025 22.1 7.6 9 150-158 29-37 (86)
271 PF08580 KAR9: Yeast cortical 45.5 85 0.0018 34.3 8.0 46 113-158 12-59 (683)
272 PF03962 Mnd1: Mnd1 family; I 45.4 2.4E+02 0.0053 25.8 11.0 38 113-153 57-94 (188)
273 PF12761 End3: Actin cytoskele 45.4 1.8E+02 0.0038 27.5 9.1 28 178-205 157-184 (195)
274 PF05278 PEARLI-4: Arabidopsis 45.3 1.7E+02 0.0037 28.9 9.3 76 135-210 186-264 (269)
275 COG1256 FlgK Flagellar hook-as 45.2 1.5E+02 0.0032 31.7 9.6 83 121-207 131-213 (552)
276 cd07624 BAR_SNX7_30 The Bin/Am 45.2 1.4E+02 0.003 27.1 8.3 72 150-221 18-89 (200)
277 PF12238 MSA-2c: Merozoite sur 45.0 1.7E+02 0.0036 27.8 8.9 52 156-207 6-67 (205)
278 PF04012 PspA_IM30: PspA/IM30 44.7 2.4E+02 0.0052 25.5 11.5 41 172-212 96-136 (221)
279 PF05739 SNARE: SNARE domain; 44.5 1.2E+02 0.0026 21.9 8.6 41 170-210 7-47 (63)
280 PF06009 Laminin_II: Laminin D 44.4 7.4 0.00016 33.5 0.0 12 171-182 49-60 (138)
281 PF12732 YtxH: YtxH-like prote 44.4 59 0.0013 25.0 5.0 13 132-144 30-42 (74)
282 PF04791 LMBR1: LMBR1-like mem 44.3 95 0.0021 31.1 7.7 51 93-147 167-222 (471)
283 TIGR02231 conserved hypothetic 44.3 1.5E+02 0.0032 30.6 9.3 89 128-216 67-166 (525)
284 PRK00888 ftsB cell division pr 44.1 51 0.0011 27.6 4.9 63 94-188 3-69 (105)
285 TIGR02338 gimC_beta prefoldin, 43.9 47 0.001 27.5 4.7 21 119-140 59-79 (110)
286 PF04108 APG17: Autophagy prot 43.8 2.5E+02 0.0055 28.5 10.7 31 123-153 201-231 (412)
287 smart00502 BBC B-Box C-termina 43.8 1.6E+02 0.0034 23.2 10.4 39 126-164 19-57 (127)
288 PF05549 Allexi_40kDa: Allexiv 43.7 2.3E+02 0.005 28.1 9.9 34 262-298 165-206 (271)
289 PF09738 DUF2051: Double stran 43.7 59 0.0013 32.2 6.1 60 145-204 104-163 (302)
290 COG4026 Uncharacterized protei 43.6 78 0.0017 31.1 6.6 14 28-42 17-30 (290)
291 PF01920 Prefoldin_2: Prefoldi 43.6 1.6E+02 0.0034 23.1 9.0 24 143-166 9-32 (106)
292 PRK11091 aerobic respiration c 43.6 4.2E+02 0.0092 28.0 15.7 33 133-165 90-122 (779)
293 KOG1924 RhoA GTPase effector D 43.5 2E+02 0.0043 32.9 10.4 128 150-277 369-555 (1102)
294 PRK13293 F420-0--gamma-glutamy 43.4 21 0.00046 34.5 2.9 72 63-134 127-202 (245)
295 PRK06569 F0F1 ATP synthase sub 43.4 2.5E+02 0.0054 25.5 9.4 50 140-189 35-84 (155)
296 PF04111 APG6: Autophagy prote 43.2 3.1E+02 0.0068 27.0 10.9 75 142-216 53-127 (314)
297 PF06936 Selenoprotein_S: Sele 43.0 63 0.0014 30.0 5.8 61 94-155 36-96 (190)
298 KOG4515 Uncharacterized conser 43.0 3.1E+02 0.0067 26.3 10.4 52 124-175 91-142 (217)
299 TIGR02977 phageshock_pspA phag 42.7 2.7E+02 0.0058 25.7 9.9 26 188-213 159-184 (219)
300 PRK10246 exonuclease subunit S 42.5 2.5E+02 0.0054 31.9 11.3 70 126-195 782-857 (1047)
301 PF01920 Prefoldin_2: Prefoldi 42.5 65 0.0014 25.3 5.1 35 147-181 63-97 (106)
302 PF02994 Transposase_22: L1 tr 42.4 40 0.00087 33.7 4.8 31 176-206 160-190 (370)
303 cd07667 BAR_SNX30 The Bin/Amph 42.4 3.2E+02 0.007 26.4 13.3 31 124-154 103-133 (240)
304 PF02520 DUF148: Domain of unk 42.3 1.3E+02 0.0027 24.8 7.0 52 117-168 36-87 (113)
305 TIGR03752 conj_TIGR03752 integ 42.0 2.1E+02 0.0045 30.4 9.9 53 149-207 90-142 (472)
306 PF07957 DUF3294: Protein of u 41.8 53 0.0011 31.4 5.2 66 147-221 5-78 (216)
307 PF04100 Vps53_N: Vps53-like, 41.6 3.7E+02 0.008 27.2 11.4 58 128-185 25-96 (383)
308 PRK01919 tatB sec-independent 41.4 1.8E+02 0.0038 27.0 8.3 32 124-155 23-54 (169)
309 PF11945 WASH_WAHD: WAHD domai 41.4 1.1E+02 0.0024 30.3 7.5 54 128-181 18-71 (297)
310 COG2959 HemX Uncharacterized e 41.3 1.4E+02 0.0031 30.9 8.4 20 260-279 211-233 (391)
311 PF04778 LMP: LMP repeated reg 41.1 2E+02 0.0043 26.5 8.4 82 133-214 5-95 (157)
312 TIGR01000 bacteriocin_acc bact 40.8 2.8E+02 0.006 28.1 10.4 13 14-26 67-79 (457)
313 PF06320 GCN5L1: GCN5-like pro 40.6 2.4E+02 0.0052 24.3 9.2 57 158-214 38-94 (121)
314 cd07627 BAR_Vps5p The Bin/Amph 40.5 2.9E+02 0.0063 25.3 13.1 47 124-173 58-104 (216)
315 PF04124 Dor1: Dor1-like famil 40.5 3.6E+02 0.0078 26.3 10.9 67 143-209 18-88 (338)
316 PF02403 Seryl_tRNA_N: Seryl-t 40.4 2E+02 0.0042 23.2 10.0 70 153-222 29-101 (108)
317 PLN02320 seryl-tRNA synthetase 40.4 1.5E+02 0.0033 31.5 8.7 92 110-210 63-159 (502)
318 COG3910 Predicted ATPase [Gene 40.3 32 0.0007 33.0 3.5 45 63-114 24-70 (233)
319 TIGR02976 phageshock_pspB phag 40.3 20 0.00043 28.8 1.9 44 118-164 24-67 (75)
320 COG0598 CorA Mg2+ and Co2+ tra 40.1 3.6E+02 0.0077 26.1 11.7 91 117-207 143-246 (322)
321 PF05546 She9_MDM33: She9 / Md 39.8 83 0.0018 29.9 6.1 16 190-205 34-49 (207)
322 cd07630 BAR_SNX_like The Bin/A 39.8 1.4E+02 0.003 27.6 7.5 80 117-196 28-108 (198)
323 COG5665 NOT5 CCR4-NOT transcri 39.8 2.7E+02 0.0059 29.4 10.1 43 126-174 117-159 (548)
324 PF00957 Synaptobrevin: Synapt 39.7 1.8E+02 0.004 22.7 9.5 16 134-149 9-24 (89)
325 PF10211 Ax_dynein_light: Axon 39.7 3E+02 0.0065 25.2 9.7 22 185-206 167-188 (189)
326 cd04786 HTH_MerR-like_sg7 Heli 39.7 1E+02 0.0022 26.5 6.2 19 151-169 49-67 (131)
327 PRK09039 hypothetical protein; 39.6 4E+02 0.0086 26.5 13.0 24 286-310 264-287 (343)
328 PRK04098 sec-independent trans 39.5 3E+02 0.0064 25.2 9.4 51 122-172 39-93 (158)
329 cd00024 CHROMO Chromatin organ 39.5 29 0.00064 24.1 2.5 25 105-129 21-45 (55)
330 COG5185 HEC1 Protein involved 39.3 1.6E+02 0.0036 31.6 8.7 100 111-210 363-516 (622)
331 KOG2199 Signal transducing ada 39.3 1E+02 0.0022 32.4 7.1 29 188-216 317-345 (462)
332 PRK11085 magnesium/nickel/coba 39.2 3.9E+02 0.0085 26.4 11.6 22 124-145 142-163 (316)
333 TIGR01005 eps_transp_fam exopo 39.1 5.2E+02 0.011 27.8 13.5 15 61-75 199-213 (754)
334 PF13094 CENP-Q: CENP-Q, a CEN 38.9 1.7E+02 0.0036 25.5 7.5 43 168-210 42-84 (160)
335 KOG0161 Myosin class II heavy 38.9 5.4E+02 0.012 32.0 13.7 45 123-167 931-978 (1930)
336 KOG0994 Extracellular matrix g 38.8 1.5E+02 0.0033 35.1 8.9 68 137-208 1227-1294(1758)
337 KOG2629 Peroxisomal membrane a 38.8 1.1E+02 0.0024 30.6 7.0 29 238-266 201-229 (300)
338 TIGR00414 serS seryl-tRNA synt 38.8 1.3E+02 0.0028 30.6 7.7 73 153-225 30-106 (418)
339 PRK10361 DNA recombination pro 38.7 4.1E+02 0.0089 28.2 11.5 31 262-292 218-250 (475)
340 cd07647 F-BAR_PSTPIP The F-BAR 38.7 3.2E+02 0.007 25.3 10.7 41 118-158 96-136 (239)
341 PLN03223 Polycystin cation cha 38.5 1.5E+02 0.0033 35.5 8.9 91 122-217 767-859 (1634)
342 TIGR01010 BexC_CtrB_KpsE polys 38.4 3.3E+02 0.0072 26.5 10.3 85 122-206 164-260 (362)
343 PF03233 Cauli_AT: Aphid trans 38.4 2.1E+02 0.0045 26.4 8.2 21 191-211 138-158 (163)
344 PF10234 Cluap1: Clusterin-ass 38.1 2.5E+02 0.0054 27.6 9.2 76 130-206 126-201 (267)
345 PF10267 Tmemb_cc2: Predicted 38.0 3.6E+02 0.0079 27.9 10.8 78 128-208 219-318 (395)
346 PRK10807 paraquat-inducible pr 37.9 88 0.0019 33.1 6.6 23 141-163 438-460 (547)
347 TIGR02492 flgK_ends flagellar 37.6 3.1E+02 0.0067 26.6 9.9 36 121-156 127-162 (322)
348 PF10174 Cast: RIM-binding pro 37.6 3.3E+02 0.0071 30.6 11.0 80 126-205 313-395 (775)
349 PF10392 COG5: Golgi transport 37.5 2.4E+02 0.0052 24.0 8.1 72 127-205 25-96 (132)
350 PF08702 Fib_alpha: Fibrinogen 37.3 3E+02 0.0064 24.4 12.3 96 115-210 23-126 (146)
351 PF04012 PspA_IM30: PspA/IM30 37.0 2.2E+02 0.0048 25.7 8.3 15 61-75 28-42 (221)
352 PF14817 HAUS5: HAUS augmin-li 36.8 2.6E+02 0.0056 30.6 9.9 81 147-227 80-160 (632)
353 COG1463 Ttg2C ABC-type transpo 36.8 2.2E+02 0.0048 28.1 8.8 13 215-227 267-279 (359)
354 PF04906 Tweety: Tweety; Inte 36.8 2.9E+02 0.0063 28.1 9.9 87 99-187 73-162 (406)
355 PRK04654 sec-independent trans 36.7 3E+02 0.0066 26.4 9.3 33 124-156 23-55 (214)
356 PF02181 FH2: Formin Homology 36.6 2.1E+02 0.0046 27.7 8.6 38 189-226 310-347 (370)
357 TIGR03007 pepcterm_ChnLen poly 36.6 2.3E+02 0.0049 28.6 9.1 31 123-153 156-186 (498)
358 PF11802 CENP-K: Centromere-as 36.6 4.3E+02 0.0094 26.1 13.9 113 61-211 57-170 (268)
359 PRK11115 transcriptional regul 36.6 3.2E+02 0.0069 24.5 9.3 46 121-166 20-65 (236)
360 KOG4603 TBP-1 interacting prot 36.5 1.6E+02 0.0035 27.8 7.3 59 151-209 84-144 (201)
361 COG1730 GIM5 Predicted prefold 36.5 57 0.0012 29.2 4.3 43 120-162 86-131 (145)
362 PRK01156 chromosome segregatio 36.5 3.5E+02 0.0077 29.6 11.1 25 136-160 163-187 (895)
363 PRK15396 murein lipoprotein; P 36.5 1E+02 0.0022 25.1 5.3 28 154-181 33-60 (78)
364 PF05384 DegS: Sensor protein 36.4 1.6E+02 0.0034 26.8 7.1 47 148-194 100-146 (159)
365 TIGR02680 conserved hypothetic 36.4 5.2E+02 0.011 30.5 12.9 43 169-211 923-965 (1353)
366 cd00179 SynN Syntaxin N-termin 36.3 99 0.0021 25.9 5.6 14 194-207 54-67 (151)
367 PF12329 TMF_DNA_bd: TATA elem 35.9 2.2E+02 0.0047 22.5 8.5 66 158-223 3-68 (74)
368 KOG0809 SNARE protein TLG2/Syn 35.8 2.9E+02 0.0063 27.8 9.4 102 123-224 134-272 (305)
369 PF08702 Fib_alpha: Fibrinogen 35.7 3.1E+02 0.0068 24.2 12.1 44 140-183 23-66 (146)
370 PF06705 SF-assemblin: SF-asse 35.5 3.7E+02 0.0081 25.0 12.6 35 124-158 88-122 (247)
371 PHA03395 p10 fibrous body prot 35.5 1.3E+02 0.0028 25.2 5.9 25 184-208 38-62 (87)
372 PF14182 YgaB: YgaB-like prote 35.4 2.5E+02 0.0053 23.2 7.4 46 153-198 14-64 (79)
373 PHA03332 membrane glycoprotein 35.4 2E+02 0.0043 33.8 9.0 15 229-243 1013-1027(1328)
374 COG3352 FlaC Putative archaeal 35.4 2.1E+02 0.0046 26.3 7.7 78 115-193 63-141 (157)
375 PF07106 TBPIP: Tat binding pr 35.3 1.1E+02 0.0024 26.8 5.9 59 126-188 77-137 (169)
376 PF09763 Sec3_C: Exocyst compl 35.3 1.9E+02 0.0041 31.0 8.7 68 138-205 8-75 (701)
377 PRK04863 mukB cell division pr 35.3 5.7E+02 0.012 30.8 13.0 15 61-75 235-249 (1486)
378 PF06120 Phage_HK97_TLTM: Tail 35.2 4.7E+02 0.01 26.1 12.4 31 175-205 142-172 (301)
379 KOG4559 Uncharacterized conser 35.1 1.2E+02 0.0025 26.5 5.7 49 125-173 58-106 (120)
380 PRK11519 tyrosine kinase; Prov 35.0 6.2E+02 0.013 27.5 12.7 27 126-152 265-291 (719)
381 PF10152 DUF2360: Predicted co 35.0 2.2E+02 0.0048 25.1 7.7 29 180-208 20-48 (148)
382 COG4477 EzrA Negative regulato 35.0 3.9E+02 0.0084 29.1 10.7 79 103-182 236-338 (570)
383 PF05508 Ran-binding: RanGTP-b 34.9 2.5E+02 0.0053 28.2 8.8 47 120-166 15-69 (302)
384 KOG4670 Uncharacterized conser 34.8 53 0.0012 35.3 4.4 75 147-223 375-451 (602)
385 PF10191 COG7: Golgi complex c 34.8 3.2E+02 0.0069 30.2 10.4 62 130-191 40-101 (766)
386 PRK12482 flagellar motor prote 34.7 2.1E+02 0.0045 28.2 8.2 93 94-188 5-106 (287)
387 cd07655 F-BAR_PACSIN The F-BAR 34.7 2.5E+02 0.0053 26.6 8.5 32 122-153 113-144 (258)
388 PF08172 CASP_C: CASP C termin 34.6 1.1E+02 0.0025 29.3 6.3 44 139-182 79-122 (248)
389 TIGR02132 phaR_Bmeg polyhydrox 34.5 1.8E+02 0.0038 27.5 7.2 20 126-145 84-103 (189)
390 KOG3595 Dyneins, heavy chain [ 34.3 3.6E+02 0.0079 31.8 11.3 19 115-133 894-912 (1395)
391 KOG4674 Uncharacterized conser 34.3 5.8E+02 0.013 31.6 12.9 78 125-205 777-854 (1822)
392 KOG3758 Uncharacterized conser 34.3 3.4E+02 0.0075 29.9 10.3 79 123-204 51-129 (655)
393 PF06825 HSBP1: Heat shock fac 34.2 1.1E+02 0.0024 23.4 4.9 30 136-165 11-40 (54)
394 KOG1961 Vacuolar sorting prote 33.9 1.7E+02 0.0037 32.2 7.9 53 150-202 72-124 (683)
395 smart00298 CHROMO Chromatin or 33.8 45 0.00098 23.0 2.7 24 105-128 19-42 (55)
396 COG4026 Uncharacterized protei 33.7 4.8E+02 0.01 25.8 10.8 68 163-230 138-205 (290)
397 PTZ00446 vacuolar sorting prot 33.6 2.7E+02 0.0059 26.0 8.4 33 135-169 111-143 (191)
398 PF02520 DUF148: Domain of unk 33.6 1.5E+02 0.0033 24.3 6.1 15 121-135 29-43 (113)
399 smart00397 t_SNARE Helical reg 33.5 1.7E+02 0.0037 20.5 6.9 26 153-178 12-37 (66)
400 PF12777 MT: Microtubule-bindi 33.5 3E+02 0.0065 27.1 9.1 9 101-109 194-202 (344)
401 PLN03094 Substrate binding sub 33.4 1.1E+02 0.0025 31.0 6.4 40 134-173 306-347 (370)
402 KOG0630 Predicted pyridoxal-de 33.4 2.1E+02 0.0047 31.3 8.5 37 243-279 787-827 (838)
403 KOG0978 E3 ubiquitin ligase in 33.4 4.4E+02 0.0095 29.4 11.0 84 124-207 534-620 (698)
404 COG1392 Phosphate transport re 33.3 4.2E+02 0.009 24.9 10.6 97 133-230 85-198 (217)
405 PF02302 PTS_IIB: PTS system, 33.3 13 0.00028 28.5 -0.2 18 7-24 1-18 (90)
406 PF15290 Syntaphilin: Golgi-lo 33.2 4.1E+02 0.0089 26.8 9.9 30 178-207 114-143 (305)
407 PHA00276 phage lambda Rz-like 33.1 2E+02 0.0043 26.1 7.1 31 161-191 50-80 (144)
408 PF08614 ATG16: Autophagy prot 32.9 2.4E+02 0.0053 25.4 7.8 52 143-194 120-171 (194)
409 PRK13169 DNA replication intia 32.7 1.7E+02 0.0036 25.2 6.4 32 122-153 2-33 (110)
410 PRK15396 murein lipoprotein; P 32.6 1.6E+02 0.0035 23.9 5.9 10 212-221 63-72 (78)
411 PF12128 DUF3584: Protein of u 32.5 4.3E+02 0.0094 30.5 11.3 84 127-210 287-381 (1201)
412 COG2433 Uncharacterized conser 32.4 2.8E+02 0.006 30.6 9.2 72 135-206 418-492 (652)
413 KOG0517 Beta-spectrin [Cytoske 32.3 2.3E+02 0.0049 35.3 9.1 72 141-213 918-1009(2473)
414 PF06156 DUF972: Protein of un 32.1 97 0.0021 26.3 4.8 55 148-202 3-57 (107)
415 PF12352 V-SNARE_C: Snare regi 32.0 2.1E+02 0.0045 21.1 7.5 34 161-201 30-63 (66)
416 COG0497 RecN ATPase involved i 32.0 2.8E+02 0.0061 30.0 9.2 181 37-232 189-380 (557)
417 PRK11677 hypothetical protein; 31.9 1.7E+02 0.0036 26.0 6.4 39 138-176 32-70 (134)
418 KOG4514 Uncharacterized conser 31.9 4.1E+02 0.009 25.4 9.3 29 174-202 192-220 (222)
419 PF15112 DUF4559: Domain of un 31.9 1E+02 0.0023 30.9 5.7 75 121-195 204-285 (307)
420 PF05276 SH3BP5: SH3 domain-bi 31.8 4.8E+02 0.01 25.2 10.1 82 127-208 20-111 (239)
421 PF01494 FAD_binding_3: FAD bi 31.7 15 0.00032 33.2 -0.1 14 9-22 4-17 (356)
422 PLN02320 seryl-tRNA synthetase 31.7 1.6E+02 0.0034 31.3 7.2 24 197-220 139-162 (502)
423 PRK10499 PTS system N,N'-diace 31.6 26 0.00056 29.1 1.3 74 7-85 5-82 (106)
424 PF05478 Prominin: Prominin; 31.5 4.2E+02 0.0092 29.2 10.7 35 118-152 159-197 (806)
425 TIGR00606 rad50 rad50. This fa 31.5 5.9E+02 0.013 29.7 12.2 43 151-193 222-264 (1311)
426 PF00732 GMC_oxred_N: GMC oxid 31.3 15 0.00033 33.5 -0.1 15 9-23 3-17 (296)
427 cd00176 SPEC Spectrin repeats, 31.2 3.1E+02 0.0067 22.8 8.9 52 177-229 75-126 (213)
428 PF10310 DUF2413: Protein of u 31.2 1.5E+02 0.0033 30.9 7.0 11 61-71 34-44 (444)
429 COG1340 Uncharacterized archae 31.2 5.5E+02 0.012 25.7 12.2 73 135-207 51-126 (294)
430 COG2096 cob(I)alamin adenosylt 31.2 1.2E+02 0.0027 28.3 5.7 64 137-209 38-102 (184)
431 TIGR03007 pepcterm_ChnLen poly 31.1 5.7E+02 0.012 25.8 11.5 15 61-75 166-180 (498)
432 cd07649 F-BAR_GAS7 The F-BAR ( 30.8 4.6E+02 0.01 24.7 12.4 108 119-227 98-212 (233)
433 PF13874 Nup54: Nucleoporin co 30.7 1.7E+02 0.0036 25.4 6.2 69 124-192 54-125 (141)
434 PF10224 DUF2205: Predicted co 30.7 1.8E+02 0.0039 23.7 5.9 43 189-231 24-66 (80)
435 PHA02414 hypothetical protein 30.6 1.7E+02 0.0036 25.4 5.9 66 151-226 9-74 (111)
436 PF07544 Med9: RNA polymerase 30.6 1.6E+02 0.0035 23.5 5.6 58 130-188 23-80 (83)
437 PF04380 BMFP: Membrane fusoge 30.5 2.8E+02 0.006 22.1 8.4 24 187-210 49-72 (79)
438 PF14257 DUF4349: Domain of un 30.5 1.5E+02 0.0033 27.6 6.3 28 171-198 166-193 (262)
439 KOG0804 Cytoplasmic Zn-finger 30.2 5.1E+02 0.011 27.7 10.5 75 131-208 367-441 (493)
440 KOG4677 Golgi integral membran 30.0 4.8E+02 0.011 28.1 10.3 73 139-211 249-346 (554)
441 PF03908 Sec20: Sec20; InterP 30.0 2.9E+02 0.0062 22.1 9.0 74 147-221 2-75 (92)
442 PF10267 Tmemb_cc2: Predicted 29.9 6.5E+02 0.014 26.1 12.8 96 133-229 214-318 (395)
443 PF09403 FadA: Adhesion protei 29.8 3.8E+02 0.0083 23.5 11.7 84 124-207 23-112 (126)
444 KOG3091 Nuclear pore complex, 29.8 2.2E+02 0.0048 30.5 7.8 63 149-211 337-399 (508)
445 COG5173 SEC6 Exocyst complex s 29.5 7.3E+02 0.016 27.6 11.7 73 151-226 34-108 (742)
446 PF13747 DUF4164: Domain of un 29.4 3.2E+02 0.0068 22.3 9.8 51 170-220 35-85 (89)
447 PF02388 FemAB: FemAB family; 29.4 98 0.0021 31.1 5.1 30 120-149 234-263 (406)
448 PF02346 Vac_Fusion: Chordopox 29.4 1.7E+02 0.0038 22.6 5.3 51 155-205 3-53 (57)
449 PF04977 DivIC: Septum formati 29.4 1.6E+02 0.0035 21.9 5.2 30 150-179 21-50 (80)
450 PF05266 DUF724: Protein of un 29.3 4.6E+02 0.01 24.2 9.8 54 150-203 90-146 (190)
451 PRK09458 pspB phage shock prot 29.2 39 0.00085 27.5 1.9 44 118-164 24-67 (75)
452 KOG3385 V-SNARE [Intracellular 29.2 1.8E+02 0.0039 25.6 6.0 59 163-221 32-90 (118)
453 KOG0018 Structural maintenance 29.1 4.1E+02 0.0089 31.2 10.2 86 115-209 668-753 (1141)
454 PRK13169 DNA replication intia 29.0 1.2E+02 0.0025 26.1 4.8 53 148-200 3-55 (110)
455 TIGR01834 PHA_synth_III_E poly 29.0 3.9E+02 0.0086 27.0 9.2 26 115-140 195-220 (320)
456 PF03961 DUF342: Protein of un 28.9 2.6E+02 0.0056 28.4 8.1 6 76-81 285-290 (451)
457 KOG3990 Uncharacterized conser 28.9 1.8E+02 0.0039 29.0 6.6 35 172-207 251-286 (305)
458 PRK09303 adaptive-response sen 28.9 1.3E+02 0.0027 29.2 5.7 19 168-186 158-176 (380)
459 PRK10778 dksA RNA polymerase-b 28.7 1.3E+02 0.0029 26.8 5.3 47 110-156 7-56 (151)
460 TIGR00153 conserved hypothetic 28.4 4.5E+02 0.0096 23.8 8.8 20 133-152 86-105 (216)
461 PRK11020 hypothetical protein; 28.1 2.5E+02 0.0054 24.7 6.7 54 152-214 4-57 (118)
462 PF14661 HAUS6_N: HAUS augmin- 28.0 5.1E+02 0.011 24.3 9.5 55 136-190 154-208 (247)
463 PF06013 WXG100: Proteins of 1 28.0 2.3E+02 0.0051 20.4 9.6 26 138-163 10-35 (86)
464 PF03962 Mnd1: Mnd1 family; I 28.0 4.7E+02 0.01 23.9 9.7 32 118-149 66-97 (188)
465 PRK05431 seryl-tRNA synthetase 27.9 2.1E+02 0.0045 29.2 7.2 72 154-225 29-103 (425)
466 PF09325 Vps5: Vps5 C terminal 27.9 4.4E+02 0.0095 23.5 8.9 145 61-223 29-191 (236)
467 KOG0977 Nuclear envelope prote 27.9 5E+02 0.011 28.1 10.2 48 160-207 141-188 (546)
468 PF12795 MscS_porin: Mechanose 27.8 4.9E+02 0.011 24.1 9.9 56 151-206 83-138 (240)
469 PF13514 AAA_27: AAA domain 27.5 3.1E+02 0.0068 31.1 9.1 92 142-238 892-983 (1111)
470 PF05667 DUF812: Protein of un 27.5 4.6E+02 0.01 28.4 9.9 9 38-46 101-109 (594)
471 KOG0811 SNARE protein PEP12/VA 27.4 2.8E+02 0.006 27.2 7.6 61 165-225 171-235 (269)
472 KOG0963 Transcription factor/C 27.4 5.4E+02 0.012 28.4 10.3 74 136-209 179-263 (629)
473 COG4064 MtrG Tetrahydromethano 27.3 97 0.0021 25.2 3.8 27 188-221 15-41 (75)
474 PF08010 Phage_30_3: Bacteriop 27.3 60 0.0013 29.4 2.9 43 107-150 72-114 (146)
475 PF06825 HSBP1: Heat shock fac 27.1 1.6E+02 0.0034 22.5 4.7 37 130-166 12-48 (54)
476 PF07851 TMPIT: TMPIT-like pro 27.1 3E+02 0.0066 27.8 8.0 50 137-186 9-58 (330)
477 cd07623 BAR_SNX1_2 The Bin/Amp 27.0 3.9E+02 0.0084 24.7 8.3 122 60-200 16-142 (224)
478 PRK01026 tetrahydromethanopter 27.0 66 0.0014 26.4 2.8 23 188-217 15-37 (77)
479 KOG0971 Microtubule-associated 26.8 7.5E+02 0.016 29.0 11.6 91 124-214 899-1002(1243)
480 KOG0946 ER-Golgi vesicle-tethe 26.6 1.5E+02 0.0033 33.7 6.2 81 135-215 809-889 (970)
481 COG0598 CorA Mg2+ and Co2+ tra 26.6 1.4E+02 0.0031 28.8 5.6 72 135-206 180-252 (322)
482 TIGR01988 Ubi-OHases Ubiquinon 26.6 22 0.00047 33.3 0.0 14 9-22 2-15 (385)
483 PF10212 TTKRSYEDQ: Predicted 26.6 4.9E+02 0.011 28.1 9.7 38 147-184 414-451 (518)
484 PF05164 ZapA: Cell division p 26.5 1.6E+02 0.0035 22.5 4.9 27 137-163 61-89 (89)
485 PF09789 DUF2353: Uncharacteri 26.5 5.4E+02 0.012 26.0 9.6 67 131-197 29-109 (319)
486 KOG2196 Nuclear porin [Nuclear 26.4 2.8E+02 0.006 27.3 7.3 31 133-163 128-158 (254)
487 PF14728 PHTB1_C: PTHB1 C-term 26.3 5.8E+02 0.013 26.0 10.0 77 120-200 210-294 (377)
488 KOG0977 Nuclear envelope prote 26.3 4.1E+02 0.0089 28.8 9.2 46 150-195 145-190 (546)
489 smart00503 SynN Syntaxin N-ter 26.1 3.3E+02 0.0072 21.5 10.0 78 130-207 10-101 (117)
490 PHA03386 P10 fibrous body prot 26.1 2E+02 0.0044 24.4 5.6 51 126-177 10-60 (94)
491 PF13863 DUF4200: Domain of un 26.1 3.7E+02 0.008 22.0 10.6 81 130-210 23-103 (126)
492 cd04776 HTH_GnyR Helix-Turn-He 26.0 3.4E+02 0.0074 22.7 7.1 60 150-209 46-115 (118)
493 COG4694 Uncharacterized protei 26.0 3E+02 0.0064 30.5 8.1 75 154-229 386-479 (758)
494 cd07662 BAR_SNX6 The Bin/Amphi 25.9 2.8E+02 0.006 26.6 7.2 79 117-197 47-125 (218)
495 cd04787 HTH_HMRTR_unk Helix-Tu 25.7 1.8E+02 0.004 24.6 5.5 63 150-212 48-117 (133)
496 PF05278 PEARLI-4: Arabidopsis 25.6 6.7E+02 0.014 24.9 12.2 98 137-235 171-268 (269)
497 PF00435 Spectrin: Spectrin re 25.6 2.7E+02 0.006 20.4 9.9 96 135-230 1-101 (105)
498 PRK01156 chromosome segregatio 25.3 4.8E+02 0.01 28.6 9.8 78 135-212 359-447 (895)
499 TIGR00985 3a0801s04tom mitocho 25.3 3.9E+02 0.0085 24.1 7.7 99 97-225 15-118 (148)
500 PF04871 Uso1_p115_C: Uso1 / p 25.2 4.6E+02 0.01 22.9 9.8 76 131-206 26-102 (136)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=8.7e-59 Score=394.67 Aligned_cols=119 Identities=48% Similarity=0.781 Sum_probs=116.0
Q ss_pred chhh-hHHHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 020328 93 KYGV-IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA 171 (327)
Q Consensus 93 ~y~l-~a~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ 171 (327)
.|++ +|++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+|.|++++
T Consensus 7 ~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~ 86 (126)
T PF07889_consen 7 SLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQ 86 (126)
T ss_pred chhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020328 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 172 ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (327)
|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=97.04 E-value=0.0017 Score=53.96 Aligned_cols=88 Identities=17% Similarity=0.329 Sum_probs=49.2
Q ss_pred hhhhHHHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-
Q 020328 94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT- 172 (327)
Q Consensus 94 y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~i- 172 (327)
++++.++.+++|++.||+ ++- =||+|..+.. |.+|+++.|.++++...-.+..
T Consensus 9 w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~LP 62 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHLP 62 (106)
T ss_pred cHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 445556667778888886 322 3666655443 3344444444444444444444
Q ss_pred -HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 173 -QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 173 -k~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
++||..++..++++.+|++.+..-+++++-.++.+
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665555555555444
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.74 E-value=0.33 Score=45.06 Aligned_cols=99 Identities=13% Similarity=0.233 Sum_probs=74.0
Q ss_pred heeeEEe----cccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 020328 104 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (327)
Q Consensus 104 GYgYmwW----KGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (327)
||+++.- .|| +.+=+-.+..++..-+..+-++|+.+.+.|+.+...+.+|-..+..++++....+..+++|-..+
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888873 378 55555566778899999999999999999999999999999999888888766665555555444
Q ss_pred hcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 180 ~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
..+++..+.-++.|+.+++.+..+
T Consensus 145 -------~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 145 -------KNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666777766554
No 4
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.53 E-value=0.085 Score=52.14 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=21.1
Q ss_pred HHHhhcchhhhhhHHHHHHHHHHHHHH------HHHHhhhhhhhHhHHHH
Q 020328 176 VTILRGRSKLIGDEFQSVRDIVQTLES------KLIEIEGKQDITTLGVK 219 (327)
Q Consensus 176 V~~v~~dls~ig~Dv~~v~~~V~~Le~------Ki~~ie~kQd~Tn~GV~ 219 (327)
+..++..+......++.+++-+..|++ .+.++|+=-..++.-++
T Consensus 95 ~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyLlrlA~qrL~ 144 (372)
T PF04375_consen 95 LQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYLLRLANQRLQ 144 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHHHH
Confidence 333333334444445555555555554 44555555555444443
No 5
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=0.094 Score=51.47 Aligned_cols=103 Identities=16% Similarity=0.321 Sum_probs=50.7
Q ss_pred HHHHHHH---HHHHHhcC-CCceEEEeCCC----------CCCCCcchhh-hHHHhhhhee-eEEecccCCCchhhhhhh
Q 020328 61 LLAEVSS---VQQELSHV-PRSVIIETSSG----------SGTGAKKYGV-IVVIVAVGYG-YVWWKGWKLPDMMFATRR 124 (327)
Q Consensus 61 L~aQV~~---LaqElr~L-sr~iTVvn~~s----------sg~gg~~y~l-~a~iGavGYg-YmwWKGws~SDlMfVTKR 124 (327)
|.-..++ .++|++.. ..+-+|+-++. ..+-++-|++ +++.+++-|+ |-.||-|=+ =+||.-.+
T Consensus 39 I~eAfk~~gi~~~d~s~~~p~~~~~~~~~p~~~~~~P~~~~~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~-P~~l~~~~ 117 (300)
T KOG2629|consen 39 IQEAFKRDGIPAQDVSKQIPTANQVVSGGPPLLIIQPQQNVLRRWRDYFVMAVILAGIAYAAYRFVKSYVL-PRFLGESK 117 (300)
T ss_pred HHHHHHhcCCccccccccCCCcccccCCCchhhhcCCCccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhCccc
Confidence 5555565 67777755 32222322210 0122346776 4455567774 888999844 45554443
Q ss_pred h--------HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 020328 125 S--------LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (327)
Q Consensus 125 n--------msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDe 164 (327)
+ |.+=...+.|-+.++-+.++..++.++..-+.++..|++
T Consensus 118 ~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~ 165 (300)
T KOG2629|consen 118 DKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALAS 165 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444444444444444444444444444443333333333
No 6
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=94.18 E-value=0.3 Score=41.41 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=43.1
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020328 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (327)
Q Consensus 119 MfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (327)
=|||++-+...=.+--.-|..+-..|... -...+|+-|..+.+.|-|-++..+.++ ..-+.-++.|-....
T Consensus 21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~-------k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQ-------KAQGKTLQLILKTLQ 91 (102)
T ss_dssp TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 38999988855443333344444444322 333344444444444444444444444 455566677777777
Q ss_pred HHHHHHHHhhh
Q 020328 199 TLESKLIEIEG 209 (327)
Q Consensus 199 ~Le~Ki~~ie~ 209 (327)
.+..+||+||+
T Consensus 92 ~inkRLD~~E~ 102 (102)
T PF01519_consen 92 SINKRLDKMES 102 (102)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHhhccC
Confidence 77789998874
No 7
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.28 E-value=3.1 Score=39.20 Aligned_cols=92 Identities=24% Similarity=0.254 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020328 126 LSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (327)
Q Consensus 126 msnAv~svtKqLe-qVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (327)
|++|...|-.+.+ .+...-..+......+|+.+........+-....++|+.+++..+.....++++++.....||..|
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 8889999988877 445666688889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHhHH
Q 020328 205 IEIEGKQDITTLG 217 (327)
Q Consensus 205 ~~ie~kQd~Tn~G 217 (327)
..++..-+.....
T Consensus 247 ~~le~~~~~~~~~ 259 (312)
T PF00038_consen 247 RELEQRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9887665544433
No 8
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=93.15 E-value=1.4 Score=34.86 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=57.3
Q ss_pred hhHHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHH--HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 136 QLEDVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 136 qLeqVs~s---LaaaKrHLsqRId~vD~kLDeq~eis~~i--k~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
.|+++.+. +.....+|..+|+++..+|+++.++.... -+.+. -..++.+|..+|.+++..+..|..|+..|+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44445444 44557799999999999999999966544 34444 888999999999999999999999998775
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.87 E-value=1.2 Score=44.98 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=63.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020328 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 132 svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (327)
.+..++++....+...++.+...|+.+..++++...-...++.++..++.++.+++.+++.+...+..++.++..++.+-
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l 271 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555566666677888888888888888888888889999998888888888888888888887777665
Q ss_pred hhHhHH
Q 020328 212 DITTLG 217 (327)
Q Consensus 212 d~Tn~G 217 (327)
+.....
T Consensus 272 ~~~~~~ 277 (562)
T PHA02562 272 EQFQKV 277 (562)
T ss_pred HHHHHH
Confidence 544433
No 10
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=92.46 E-value=6.9 Score=39.67 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=11.1
Q ss_pred ccCcccccccCCCCCCCCCCC
Q 020328 241 RYTLSRTTLELPGITPSSRSG 261 (327)
Q Consensus 241 ~s~s~~~ale~~~~~p~sr~~ 261 (327)
+-.|.+|+=|+||.-|-.|..
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~ 544 (553)
T PRK15048 524 PQTPSRPASEQPPAQPRLRIA 544 (553)
T ss_pred ccccccccccCCccCccCCcC
Confidence 444555666665555544443
No 11
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.14 E-value=0.19 Score=49.86 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHH---HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaK---rHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (327)
+|+.++.++...|..++..|++-+ .+|+..|..+...+.+.....-..+..|..+..|+.+.+.||-...-.|..||
T Consensus 67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 444444555555555544444433 34566677777777777777777777788888888888888888888888888
Q ss_pred HHHHHhhhh
Q 020328 202 SKLIEIEGK 210 (327)
Q Consensus 202 ~Ki~~ie~k 210 (327)
.++..+|..
T Consensus 147 ~RV~~LEs~ 155 (326)
T PF04582_consen 147 SRVKALESG 155 (326)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 888877765
No 12
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.02 E-value=3.6 Score=38.28 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (327)
+++.++......+.++..+||+..++.-++..+-.++.++|+..++.-.++...-+++.+.-+..|+.+++.++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666777788888888888888888888888888777777777777777777777777777777766543
No 13
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=91.79 E-value=0.43 Score=39.70 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=47.8
Q ss_pred HHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 020328 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (327)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (327)
++.-+|.||+=.+ ++..|+++|..||+.++..+++..+..+..+++++.
T Consensus 70 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 70 VLVSIGSGYYVEK-------------------------------DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668999999988 458999999999999999999999999999999888
Q ss_pred hhcchh
Q 020328 179 LRGRSK 184 (327)
Q Consensus 179 v~~dls 184 (327)
+...+.
T Consensus 119 i~~~l~ 124 (126)
T TIGR00293 119 LEQEAQ 124 (126)
T ss_pred HHHHHh
Confidence 766543
No 14
>PRK14011 prefoldin subunit alpha; Provisional
Probab=91.70 E-value=0.6 Score=41.27 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=45.4
Q ss_pred HHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 020328 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (327)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (327)
++..||.||.-=| ++..|+++|..||+.|+..+++..+..+.+.+++.+
T Consensus 72 VlVdIGtGy~VEk-------------------------------~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~ 120 (144)
T PRK14011 72 AILGVGSDIYLEK-------------------------------DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITK 120 (144)
T ss_pred EEEEccCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999997655 567899999999999999999999999999988877
Q ss_pred hhcc
Q 020328 179 LRGR 182 (327)
Q Consensus 179 v~~d 182 (327)
++..
T Consensus 121 l~~~ 124 (144)
T PRK14011 121 LRKE 124 (144)
T ss_pred HHHH
Confidence 7654
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=91.55 E-value=3 Score=36.43 Aligned_cols=85 Identities=13% Similarity=0.262 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 020328 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (327)
Q Consensus 140 Vs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (327)
+++-.=+|||.|+.=...|..+||+.-|-...+|++++ ..+.+.+.-++....+......++..+..+-.....=|.
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45666678888888888888888887777777776654 233333333443333333334444433333333333333
Q ss_pred HHHHHHHh
Q 020328 220 KLCDRARE 227 (327)
Q Consensus 220 ~LC~f~~~ 227 (327)
.+=+.+++
T Consensus 107 ~v~~~V~~ 114 (126)
T PF07889_consen 107 SVQQMVEG 114 (126)
T ss_pred HHHHHHHH
Confidence 33333333
No 16
>PRK11637 AmiB activator; Provisional
Probab=91.21 E-value=2.3 Score=42.41 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHH---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLa---aaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (327)
...+=...+-+++++....+. .-++++.+.|+.++.++++..+-...++.++..+..+++....++...+.-+..++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554 34444556677777777777776777777777777777777776666666666555
Q ss_pred HHHH
Q 020328 202 SKLI 205 (327)
Q Consensus 202 ~Ki~ 205 (327)
..+.
T Consensus 124 ~~l~ 127 (428)
T PRK11637 124 RLLA 127 (428)
T ss_pred HHHH
Confidence 5554
No 17
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=90.96 E-value=4.6 Score=35.30 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA 171 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ 171 (327)
|.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+....
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~e 74 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVE 74 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999999999988776554443
No 18
>PRK11637 AmiB activator; Provisional
Probab=90.72 E-value=2.1 Score=42.74 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=38.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 131 NSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLs---qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+.+-++|+++...|...++.+. .++..+..++++..+=...+.+++..++.+++.+..+++.++.-+..++.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444 4444444444444444444444455555555555555555555555555444444
Q ss_pred h
Q 020328 208 E 208 (327)
Q Consensus 208 e 208 (327)
+
T Consensus 123 ~ 123 (428)
T PRK11637 123 E 123 (428)
T ss_pred H
Confidence 3
No 19
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=90.61 E-value=2.7 Score=33.34 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=21.4
Q ss_pred hhHhHHHHHHHHHHHhhcc-CCCccceeccccC
Q 020328 212 DITTLGVKKLCDRARELEN-GRPTELVQASRYT 243 (327)
Q Consensus 212 d~Tn~GV~~LC~f~~~~~~-~~~~~~~Q~~~s~ 243 (327)
......+..+|.|++..-. +...+++|..++.
T Consensus 85 ~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i 117 (127)
T smart00502 85 TQKQEKLSHAINFTEEALNSGDPTELLLSKKLI 117 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3456778888999876544 4666777765443
No 20
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.08 E-value=13 Score=33.16 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=51.1
Q ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH----HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchh-hhhhHHHHHH
Q 020328 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-LIGDEFQSVR 194 (327)
Q Consensus 120 fVTKRnmsnAv~svtKqLeqVs~sLaaaKrH----LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls-~ig~Dv~~v~ 194 (327)
||||..+.+..-..-..+.++-..+....|+ |....+.|...+|.. -+.+++|+..++.++. .|..+=..++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6888888887777777777777666655554 333334444444333 2344555554444332 1111122344
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHH
Q 020328 195 DIVQTLESKLIEIEGKQDITTLGVK 219 (327)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (327)
.....+|.||..++.+-+....++.
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~lr 144 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANLR 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444443
No 21
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.73 E-value=5.4 Score=34.94 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (327)
.|+.||+-|...||+...--+.+.+.+.++....+.+..-+..+..-...+|.|++.++.+-.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 477888888888888888888888888888888888888888888888888888888877643
No 22
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=89.36 E-value=12 Score=32.33 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcC
Q 020328 61 LLAEVSSVQQELSHV 75 (327)
Q Consensus 61 L~aQV~~LaqElr~L 75 (327)
+...++.++++.+.|
T Consensus 45 ~~~~i~~ia~qt~lL 59 (213)
T PF00015_consen 45 ILSLINEIAEQTNLL 59 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHh
Confidence 777788888888877
No 23
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=89.27 E-value=1.3 Score=44.79 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=27.5
Q ss_pred CCcchhh--hHHHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 90 GAKKYGV--IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR 160 (327)
Q Consensus 90 gg~~y~l--~a~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~ 160 (327)
+|..+++ ++++-++|+||-|| |. --.......-+.+..+|+.......+.+..|.+.+..++.
T Consensus 35 ~g~~l~~~aili~la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~ 99 (390)
T PRK10920 35 TGLVLSAVAIAIALAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAK 99 (390)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 23334777777666 11 1111233344444444444444444444444433333333
No 24
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=89.10 E-value=4.6 Score=32.99 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 020328 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (327)
Q Consensus 141 s~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (327)
..+|.++-+.|.+-|++|+..++.-.+..... .++..++..++.|-..+-+-..+.+.+...+|..|.-....+.+
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766544433 44445555566666666666666667777777666665555555
Q ss_pred HHHHH
Q 020328 221 LCDRA 225 (327)
Q Consensus 221 LC~f~ 225 (327)
..+-+
T Consensus 79 a~e~I 83 (89)
T PF13747_consen 79 AIETI 83 (89)
T ss_pred HHHHH
Confidence 54444
No 25
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=88.80 E-value=3.3 Score=43.83 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=69.2
Q ss_pred CCchhhh----hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH
Q 020328 115 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (327)
Q Consensus 115 ~SDlMfV----TKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv 190 (327)
++++.|+ +||||...+ -+.+=.....+-..=+.+..+|+++...++++++....+++.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~i---E~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDI---EKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666 889887654 455666666677777788889999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 020328 191 QSVRDIVQTLESKLI 205 (327)
Q Consensus 191 ~~v~~~V~~Le~Ki~ 205 (327)
+.++.--..+|.|-.
T Consensus 83 ~~L~~~~~~~~~k~~ 97 (618)
T PF06419_consen 83 SELREQKEELELKKK 97 (618)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888755555555544
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.53 E-value=5.7 Score=45.12 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=79.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (327)
Q Consensus 134 tKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (327)
-+..++.-+.+...=+...+++...+.++-+..+-.+.+++||+.-.+.++.+..|++..+..+..++.++.+++..-+-
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556667777778888888888888899999999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHHHHhhccC
Q 020328 214 TTLGVKKLCDRARELENG 231 (327)
Q Consensus 214 Tn~GV~~LC~f~~~~~~~ 231 (327)
.-.-+++||.-+..++..
T Consensus 370 ~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888999999888765543
No 27
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=88.52 E-value=0.7 Score=37.64 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=44.1
Q ss_pred HHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 020328 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (327)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (327)
++.-+|.||+=++ ++..|++.|..||+.+..++++..+-.+.+++++..
T Consensus 61 vlV~lG~~~~vE~-------------------------------s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 109 (120)
T PF02996_consen 61 VLVSLGAGYYVEM-------------------------------SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQ 109 (120)
T ss_dssp EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999888 457888889999999998888888887777777766
Q ss_pred hhcchhh
Q 020328 179 LRGRSKL 185 (327)
Q Consensus 179 v~~dls~ 185 (327)
+...+++
T Consensus 110 ~~~~l~~ 116 (120)
T PF02996_consen 110 LEQTLQQ 116 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 28
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=88.50 E-value=1.9 Score=36.59 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=41.4
Q ss_pred HHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 020328 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (327)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (327)
++.-+|+||+=.+ .+..|++.|..||+.++..+++..+....+++++..
T Consensus 78 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 78 VIVSLGAGYSAEK-------------------------------DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667999999988 347788888888888888888877777777776655
Q ss_pred hhcchhh
Q 020328 179 LRGRSKL 185 (327)
Q Consensus 179 v~~dls~ 185 (327)
++..+.+
T Consensus 127 ~~~~l~~ 133 (140)
T PRK03947 127 LAQELQQ 133 (140)
T ss_pred HHHHHHH
Confidence 5554433
No 29
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=88.49 E-value=15 Score=31.65 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=21.7
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
++...++.+-..+++..+......+.+......+..|...++.+...+..+...+.++
T Consensus 104 ~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~ 161 (213)
T PF00015_consen 104 EIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQ 161 (213)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHH
Confidence 3333333333333333333333333333333333444444444444443333333333
No 30
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.43 E-value=2 Score=35.81 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=48.8
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh--hhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 020328 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (327)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i--g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (327)
..+++.+++++++ ..+-++.+..++.+. .+|+..++..+..++++++.+++.=+--++-+.+|.+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555 455677777777888 8888889988999999999998887777777777754
No 31
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=87.88 E-value=2.9 Score=44.62 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV 176 (327)
...+.+.+.+|+..++.++.+...-..+++.-+
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~ 408 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555554444444444333
No 32
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.74 E-value=11 Score=35.24 Aligned_cols=76 Identities=9% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
.....++..+--+.+...|+.|.++|+.+...++....-.+..+..|...+..+..+..+++++..+-..|..=|.
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677788888889999988888888888888888888888888888888888888766555555443
No 33
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=86.52 E-value=6.1 Score=31.23 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=12.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 182 RSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 182 dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
|+...-+.++.+-+.|..++..+..+
T Consensus 62 dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 62 DVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555554443
No 34
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=85.88 E-value=7.4 Score=32.64 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSI 144 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sL 144 (327)
|.+.+..+..+++.+.+.|
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 35
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.47 E-value=10 Score=39.84 Aligned_cols=50 Identities=6% Similarity=0.102 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
+|.++++-++++++++..+|.+++.+....+..++.++.||..+.+++..
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333344444444444444433
No 36
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.21 E-value=16 Score=38.18 Aligned_cols=121 Identities=13% Similarity=0.267 Sum_probs=75.9
Q ss_pred hheeeEEecccCCCchhhhhh--------------------hhHHHHHHHHHhhhHHHHHHHH---HHHHHHHHhhhhhh
Q 020328 103 VGYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 159 (327)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTK--------------------RnmsnAv~svtKqLeqVs~sLa---aaKrHLsqRId~vD 159 (327)
-||-=|-=+|..|.++=.-.+ +.....+..+.+++|++|+.|. .||+...+.+..+.
T Consensus 237 ~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~ 316 (569)
T PRK04778 237 AGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLP 316 (569)
T ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355556677888887532222 2344566778888888888886 47777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc----------hhhhhhHHHHHHHH---------------------HHHHHHHHHHhh
Q 020328 160 RDVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVRDI---------------------VQTLESKLIEIE 208 (327)
Q Consensus 160 ~kLDeq~eis~~ik~eV~~v~~d----------ls~ig~Dv~~v~~~---------------------V~~Le~Ki~~ie 208 (327)
+.++...+-.+.++.|+..++.. +..+..+++.+... ...|..++..++
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666665 44444444443333 344555555666
Q ss_pred hhhhhHhHHHHHHHH
Q 020328 209 GKQDITTLGVKKLCD 223 (327)
Q Consensus 209 ~kQd~Tn~GV~~LC~ 223 (327)
..|.--..-|..|+.
T Consensus 397 ~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 397 KEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555555543
No 37
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=85.13 E-value=9.2 Score=41.71 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=24.2
Q ss_pred HHHHHhhhHHHHHH-HHHHHHHHHHhhhhhhhhH
Q 020328 130 CNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV 162 (327)
Q Consensus 130 v~svtKqLeqVs~s-LaaaKrHLsqRId~vD~kL 162 (327)
++++.+|+++|-.. ...++.|+...|++.+..+
T Consensus 189 l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 189 LNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 45666777777777 7778888888888777654
No 38
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=85.12 E-value=12 Score=36.70 Aligned_cols=100 Identities=12% Similarity=0.168 Sum_probs=73.6
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh--------------
Q 020328 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG-------------- 187 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig-------------- 187 (327)
.-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+......+..+.
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d 164 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence 334444456899999999999999999999999999998877777666666544433333333322
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 188 ----DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 188 ----~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
..+..+.+.+..||.|+..++-.+.++..+.--+
T Consensus 165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqi 202 (333)
T PF05816_consen 165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQI 202 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2345667788999999999998888888776543
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.92 E-value=17 Score=31.96 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.4
Q ss_pred HHHHHH
Q 020328 220 KLCDRA 225 (327)
Q Consensus 220 ~LC~f~ 225 (327)
+|++.+
T Consensus 176 ~l~~~~ 181 (191)
T PF04156_consen 176 QLEEKI 181 (191)
T ss_pred HHHHHH
Confidence 344433
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.81 E-value=14 Score=37.41 Aligned_cols=50 Identities=6% Similarity=0.130 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 157 SVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 157 ~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
.+..++.+........++++.........+..++++++..+..++.++.+
T Consensus 334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Confidence 33333333333334444444444444555555555555555555444443
No 41
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=84.66 E-value=19 Score=29.53 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhh---HHHHHHHHHHHHHHHHHHhhhh
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD---EFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~---Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
|...=+..+.|...+++.......-.+.......+++.-+.+|.. .|..+-.+|..||.=..++|.|
T Consensus 26 Le~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 26 LENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555544444444 6666666666666666666554
No 42
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=84.14 E-value=9.4 Score=30.86 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHH----HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQA----TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~----ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
+-++.+++.+|++.=-..|.++++.++. ++.+...=...+..+..|++.++.-++.|..|+..
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888877777777777653 44556666667788899999999999999988864
No 43
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=83.79 E-value=17 Score=32.48 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq-~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (327)
.++..+..+-.||..+.+.|...-..+..|++.+-.+|++. ..+++.++.|.+.+..++.+.-..|-++......|-..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677888888888888888888888888888777777654 45667788888888888777777777766665555555
Q ss_pred HHHh
Q 020328 204 LIEI 207 (327)
Q Consensus 204 i~~i 207 (327)
+.-+
T Consensus 115 ln~l 118 (140)
T PF04513_consen 115 LNNL 118 (140)
T ss_pred HHHh
Confidence 5444
No 44
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.75 E-value=7.1 Score=38.05 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (327)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+.....++
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888999999999998888888888888888888888888887776655444443
No 45
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=83.42 E-value=4.7 Score=37.61 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=36.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+..|+-+|..|+|...|.-..+-+.+.+-++--...+.|+..+.+-+..||.|+|.|
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665555555555545555566777777777777777777755
No 46
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.37 E-value=56 Score=36.04 Aligned_cols=102 Identities=10% Similarity=0.185 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 127 snAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
.+-+..+-..+......-...|..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns 444 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444555555566666777777777888777777765555555544 44455566677777766677766
Q ss_pred hhhhhhhHhHHHHHHHHHHHhhccCCCccc
Q 020328 207 IEGKQDITTLGVKKLCDRARELENGRPTEL 236 (327)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~ 236 (327)
-..-=..--..+.-|+.++ ++-|+-.|+.
T Consensus 445 AQDELvtfSEeLAqLYHHV-C~cNgeTPnR 473 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHV-CMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHccCCCCcc
Confidence 5555444455666666666 5555555554
No 47
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.03 E-value=12 Score=38.72 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (327)
++|+|....|++.. ++|...+++..+...-.+..+.|+..+..-+.++..|++.+++.+..++..|..++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 88888887777654 45556666777777777778888888888889999999999999999999998888766 66
Q ss_pred hHHHHHH
Q 020328 215 TLGVKKL 221 (327)
Q Consensus 215 n~GV~~L 221 (327)
..++...
T Consensus 113 qr~~La~ 119 (420)
T COG4942 113 QRRRLAE 119 (420)
T ss_pred HHHHHHH
Confidence 6666544
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.63 E-value=14 Score=34.35 Aligned_cols=69 Identities=10% Similarity=0.243 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v 193 (327)
.+.+-++.+..+|++.......-+.++.++++..+...++.++=-++.++|+..++.++....-+.+.+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555566666666666666666666666555555555555555555555555444333333333
No 49
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=82.56 E-value=33 Score=30.08 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 160 ~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
..+++..+.+..+.+.+..+...+.+....++.....+..+..++..+
T Consensus 39 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 86 (262)
T smart00283 39 ANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEEL 86 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 50
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=82.39 E-value=33 Score=34.85 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V 197 (327)
.+.++.+...=.+++.-.+.+....+++.+..+++...+.++...+.++-...+.+...+
T Consensus 269 ~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~~~~ 328 (553)
T PRK15048 269 REGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLA 328 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555566666666666666666655555555555555544444444433
No 51
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=81.18 E-value=5.8 Score=32.08 Aligned_cols=51 Identities=8% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 020328 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (327)
++++.|..+.+.++..+...+..+ .+++.+..|||.+.+-...+.+.|+++
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333 333334444444444444444444333
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.07 E-value=18 Score=36.47 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHhhhhh-------hhhHHHHHHHHHHHHHHHHHhhcchhhh
Q 020328 121 ATRRSLSDACNSVARQLEDVYSSISAAQ-------RQLSSKITSV-------DRDVNKIVEISQATQEEVTILRGRSKLI 186 (327)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sLaaaK-------rHLsqRId~v-------D~kLDeq~eis~~ik~eV~~v~~dls~i 186 (327)
-=+.+++++...+..||+.+++.+..+- |||.++++.+ -++|.+.++--++...-|++....|.+|
T Consensus 227 ~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 227 QHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344445555555555555555544444 4444444433 2333333333344444466666666666
Q ss_pred hhHHHHHHHHHH
Q 020328 187 GDEFQSVRDIVQ 198 (327)
Q Consensus 187 g~Dv~~v~~~V~ 198 (327)
.++++.+++-+.
T Consensus 307 seeLe~vK~eme 318 (359)
T PF10498_consen 307 SEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHH
Confidence 666666664433
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.05 E-value=23 Score=32.88 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=49.4
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 020328 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (327)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (327)
..||+.|..+|.+...+.........++...+..+-.|++....-+..+|.|+..++..-.....-+.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 45666666667777777777777777888888888888888888888888888877765444444443
No 54
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=80.81 E-value=6.2 Score=39.56 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhcc
Q 020328 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (327)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (327)
.+++.++..+..|-.||.+|..+=..|-.=|..+|.=++.+++
T Consensus 57 ~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~ 99 (383)
T PF04100_consen 57 EDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDN 99 (383)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555554444
No 55
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=80.71 E-value=12 Score=27.21 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=29.8
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
..|+.+..++.+.+++...|.++|.+=..-|.+|..+++....-+..=-.+|.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 56 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLK 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666655555555555555555544444333333
No 56
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=80.48 E-value=53 Score=31.03 Aligned_cols=38 Identities=34% Similarity=0.435 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh---hHhHHHHHHHHHHHh
Q 020328 190 FQSVRDIVQTLESKLIEIEGKQD---ITTLGVKKLCDRARE 227 (327)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd---~Tn~GV~~LC~f~~~ 227 (327)
...+++=|..-..||.++|.+|+ ..|.=+.-||-+..+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 44566667888889999999886 467788999998855
No 57
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=80.40 E-value=28 Score=36.18 Aligned_cols=94 Identities=17% Similarity=0.320 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhhhHHHHHH------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-----hhcchhhh
Q 020328 124 RSLSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI-----LRGRSKLI 186 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~s------------LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~-----v~~dls~i 186 (327)
+.+..-++++-.++.+|.++ +.+.|++|+..=|+|=.|.|+.+.+.+.+|++|.. ....++.+
T Consensus 176 ~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v 255 (426)
T smart00806 176 TEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETV 255 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555566666777777664 55679999999999999999999999999999743 22345556
Q ss_pred hhHHHHHHHHHH---------------HHHHHHHHhhhhhhhHhHH
Q 020328 187 GDEFQSVRDIVQ---------------TLESKLIEIEGKQDITTLG 217 (327)
Q Consensus 187 g~Dv~~v~~~V~---------------~Le~Ki~~ie~kQd~Tn~G 217 (327)
+.|++....-+. .||.-|+.|..-|+|=|.=
T Consensus 256 ~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQ 301 (426)
T smart00806 256 QKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQ 301 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554444 4667778888888876653
No 58
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=80.14 E-value=4 Score=34.03 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=10.4
Q ss_pred hHHHhhhheeeEEeccc
Q 020328 97 IVVIVAVGYGYVWWKGW 113 (327)
Q Consensus 97 ~a~iGavGYgYmwWKGw 113 (327)
++++.+.-+||+||-.+
T Consensus 9 l~~lvl~L~~~l~~qs~ 25 (110)
T PF10828_consen 9 LAVLVLGLGGWLWYQSQ 25 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444556777888654
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.13 E-value=31 Score=36.19 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHhc
Q 020328 58 FNDLLAEVSSVQQELSH 74 (327)
Q Consensus 58 ~~dL~aQV~~LaqElr~ 74 (327)
|.++..+|..|+++|.+
T Consensus 251 ~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 251 HLDIEKEIQDLKEQIDE 267 (569)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 33478888888888887
No 60
>PRK09039 hypothetical protein; Validated
Probab=80.11 E-value=21 Score=35.33 Aligned_cols=87 Identities=9% Similarity=0.218 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh-------hhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL-------IGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 137 LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~-------ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
|+..++....+..++..|+..+.++|++.+..+....-+|..++..++. +...++.....-.....||+.++.
T Consensus 100 Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455778888888888888888877666555555544444 444444444444445555555555
Q ss_pred hhhhHhHH-HHHHHH
Q 020328 210 KQDITTLG-VKKLCD 223 (327)
Q Consensus 210 kQd~Tn~G-V~~LC~ 223 (327)
.=+.+... +..|-+
T Consensus 180 ~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 180 RLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 54444433 444443
No 61
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=79.71 E-value=7.5 Score=31.42 Aligned_cols=57 Identities=14% Similarity=0.337 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh---hhHHHHHHHHHHHHHHHHHHh
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---GDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i---g~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+..++++|..-|+.+.+.|++..+.... +..+=++| ..|+..=++.|..++.+|..|
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~i-------ve~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRI-------VEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555555555555555554443332 22222222 234444455555555555554
No 62
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=79.65 E-value=8.1 Score=35.20 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
+..-..-|..+++.|+.++++..+.-+...|+|--. .|=+=..+|+.+...+..||.+|..+|.
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455677777777778888888888888888443 4467788999999999999999999664
No 63
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.04 E-value=40 Score=30.92 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020328 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (327)
Q Consensus 145 aaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~ 191 (327)
.....++..|++.+..+++++++-.+..++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667778888888888888888888888888887777777665
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.68 E-value=8.1 Score=34.84 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=45.0
Q ss_pred CCCchhhhhhhhHHH---HHHHHHhhhHHHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020328 114 KLPDMMFATRRSLSD---ACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (327)
Q Consensus 114 s~SDlMfVTKRnmsn---Av~svtKqLeqVs~sLaaaKrHLsq---RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (327)
++.+..+..+.-|+. .+..+..+|-...+.+..-++.+.. +|..+...+....+=.+...+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777766664 4677788888888888777776655 5555555555555566666688888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 020328 188 DEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 65
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=77.87 E-value=48 Score=29.07 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V 197 (327)
++++-++.++....++-+.++..=.+....++.....+++..+.+..+.+.+.++..-+..+..-++.+...+
T Consensus 137 ~la~~t~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~ 209 (262)
T smart00283 137 KLAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAAT 209 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334343333333333333333333344444444444444444444444444444444444444444443333
No 66
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=77.52 E-value=27 Score=31.54 Aligned_cols=89 Identities=10% Similarity=0.201 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhh----cchhhhhhHHHHHHHH
Q 020328 122 TRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR----GRSKLIGDEFQSVRDI 196 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sL-aaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~----~dls~ig~Dv~~v~~~ 196 (327)
|-.++-+-++.....-+.+.+.+ ..+|..|...|..|-..+.+..+=++.+.+++...+ .|...+..|+..++.+
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555555544444444444443 357888899999888777666666666666554443 4556666666667766
Q ss_pred HHHHHHHHHHhhhh
Q 020328 197 VQTLESKLIEIEGK 210 (327)
Q Consensus 197 V~~Le~Ki~~ie~k 210 (327)
+.+-.+.|..++..
T Consensus 158 l~~~~g~I~~L~~~ 171 (184)
T PF05791_consen 158 LAGENGDIPQLQKQ 171 (184)
T ss_dssp HHHTT--HHHHHHH
T ss_pred HhcccCCHHHHHHH
Confidence 66666666655443
No 67
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=77.46 E-value=24 Score=27.84 Aligned_cols=27 Identities=7% Similarity=0.316 Sum_probs=12.7
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHH
Q 020328 119 MFATRRSLSDACNSVARQLEDVYSSIS 145 (327)
Q Consensus 119 MfVTKRnmsnAv~svtKqLeqVs~sLa 145 (327)
++.+-+++......+.+.++++.+.+.
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~ 43 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVD 43 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344455555554444444444444443
No 68
>PRK04406 hypothetical protein; Provisional
Probab=77.34 E-value=10 Score=30.15 Aligned_cols=46 Identities=9% Similarity=0.119 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020328 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (327)
Q Consensus 146 aaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~ 191 (327)
.|...+.+||+.|..++--|...++..-+.|++-+..+......+.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999998888888888888777665444443333
No 69
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=76.91 E-value=1.4 Score=43.90 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=16.2
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHH--HHHHHHHHHhhccC
Q 020328 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG--VKKLCDRARELENG 231 (327)
Q Consensus 174 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G--V~~LC~f~~~~~~~ 231 (327)
.+|+.+..++...+..+..++..|.+++.-|.-+.. |++..| |-.|-+-+..+|.+
T Consensus 98 ssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLks--dVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 98 SSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKS--DVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--hhhhhcchHhhHHHHHHHHhcC
Confidence 334444444444444445555555555555554433 223322 34444445555544
No 70
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=76.86 E-value=20 Score=31.43 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 020328 187 GDEFQSVRDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (327)
..||+.++.-|..|+.+|..+..++
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5788888888888888888877653
No 71
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.51 E-value=9.5 Score=29.52 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=35.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
+..||+.|..|+--+.+..+...+.|+.-+.. |+.++..+..|..||..++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~-------I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQ-------IDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 56788888888888888888888888666655 66666666666677777663
No 72
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=76.33 E-value=5.9 Score=32.36 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (327)
+..|.+.|..||+.++..+++..+....++++...++..+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888888888888777777777665544
No 73
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=76.12 E-value=6.1 Score=32.95 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=45.6
Q ss_pred HHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 020328 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (327)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~ 178 (327)
++.-+|.||+=.+ ++..|++.+..||+.+...+++..+....++++++.
T Consensus 71 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 71 VLVDLGTGYYVEK-------------------------------DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568899998877 557788999999999999999998888888888877
Q ss_pred hhcchhh
Q 020328 179 LRGRSKL 185 (327)
Q Consensus 179 v~~dls~ 185 (327)
+...+.+
T Consensus 120 ~~~~l~~ 126 (129)
T cd00584 120 LEAELQE 126 (129)
T ss_pred HHHHHHH
Confidence 7766544
No 74
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=75.92 E-value=38 Score=32.09 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=65.4
Q ss_pred hhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhhh-------hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH---HH
Q 020328 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITS-------VDRDVNKIVEISQATQEEVTILRGRSKLIGDE---FQ 191 (327)
Q Consensus 124 RnmsnAv~svt--KqLeqVs~sLaaaKrHLsqRId~-------vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D---v~ 191 (327)
|.|-+|...++ +.|++..+.|-.|+..|.-=|+. +=+-+|.+..++..+.++...++....++-.. .+
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777765 67788888888888777644332 22233444444444555555554443322111 33
Q ss_pred HHHHHHHHHHHHHHHh-----------------hhhhhhHhHHHHHHHHHHHhhccCCCccce
Q 020328 192 SVRDIVQTLESKLIEI-----------------EGKQDITTLGVKKLCDRARELENGRPTELV 237 (327)
Q Consensus 192 ~v~~~V~~Le~Ki~~i-----------------e~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~ 237 (327)
.++.++......|.++ ..=||.|-+=|....+.++.+|..-..-++
T Consensus 106 e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ll~ 168 (214)
T PRK11166 106 DARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLL 168 (214)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333 334888999888888888877766544443
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.82 E-value=24 Score=30.48 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=51.5
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020328 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (327)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (327)
.+|..+++-+-.+++..|.+.+... .-.+|...++.+..+.+..-++-+.--++|.+++.|+..
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~~-~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALKK-EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4788888888888888888855444 445899999999999999999999999999888877443
No 76
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.75 E-value=55 Score=28.71 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=53.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+++..=-|+|++=...+..-=+.|+.|++.+...+|...+-....++.+.+.... ....++++.-|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~----~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR----KSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhHHHHHhhHHHHHHHHHHH
Confidence 4455556667776666666667777777777777776665555555444333221 223446666666676666666
Q ss_pred hhhhhhHhHHHHHH
Q 020328 208 EGKQDITTLGVKKL 221 (327)
Q Consensus 208 e~kQd~Tn~GV~~L 221 (327)
+.+=.-|+.-+...
T Consensus 93 e~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 93 EKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555544433
No 77
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.21 E-value=23 Score=38.67 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020328 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (327)
Q Consensus 146 aaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d 182 (327)
.|+.++..|+..+-...++|.+-.+..+++...++..
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ 594 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRES 594 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444444444333333
No 78
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=75.05 E-value=24 Score=30.02 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHHHHHhhhhhhhhHH-HHHHHHHHHHHHHHHhhcchh-hhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 147 AQRQLSSKITSVDRDVN-KIVEISQATQEEVTILRGRSK-LIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 147 aKrHLsqRId~vD~kLD-eq~eis~~ik~eV~~v~~dls-~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
.+.++..+++.+-++-+ ...++-+.+.+.|..+-.++. --..||+.++.-|..||.+|..++.
T Consensus 53 ~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 53 AREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444433322 234566677777766655543 2348999999999999999988764
No 79
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.92 E-value=62 Score=36.84 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 185 LIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
.+..++...+.....|+..|..++.
T Consensus 874 ~l~~~l~~~~~~~~~l~~~l~~~~~ 898 (1163)
T COG1196 874 ELEDELKELEEEKEELEEELRELES 898 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 80
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=74.76 E-value=36 Score=31.29 Aligned_cols=88 Identities=22% Similarity=0.373 Sum_probs=48.1
Q ss_pred ecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHhh-cchhhh
Q 020328 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEE-VTILR-GRSKLI 186 (327)
Q Consensus 110 WKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaa-aKrHLsqRId~vD~kLDeq~eis~~ik~e-V~~v~-~dls~i 186 (327)
||+| +.+| .+|++-+|++++.+.-.-. -+.-++.-++.+...+.+.+.-...+-.+ |..++ .+...+
T Consensus 14 w~~~---------~~sl-s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l 83 (165)
T PF09602_consen 14 WKQW---------SQSL-SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSL 83 (165)
T ss_pred HHHH---------HHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 2334 4788899999887755433 34446666666666665555444444444 54442 233333
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 020328 187 GDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~i 207 (327)
++-+.....-+..|..+|..+
T Consensus 84 ~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 84 NDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 81
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.74 E-value=49 Score=39.17 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=39.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHh---------hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020328 128 DACNSVARQLEDVYSSISAAQRQLSSK---------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLaaaKrHLsqR---------Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (327)
+-.+.+.++++.+......+++++... +......+++..+-.+...+++.+.+..+..+..+++.+..-+.
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLe 393 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD 393 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777776542 22223333333333333333344444444444444444444444
Q ss_pred HHHHHHHHh
Q 020328 199 TLESKLIEI 207 (327)
Q Consensus 199 ~Le~Ki~~i 207 (327)
.|..++...
T Consensus 394 eLqeqLael 402 (1486)
T PRK04863 394 ELKSQLADY 402 (1486)
T ss_pred HHHHHHHHH
Confidence 444444433
No 82
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=74.53 E-value=7.9 Score=38.58 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~ 196 (327)
+.++.|..+-++||.|+.=.-+--..|..|++.|..+.|+ -..-+--+++..+++.++..|+.|+..+-.-
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~f 115 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLENF 115 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999885 1222223355677777777777777766543
No 83
>PRK09793 methyl-accepting protein IV; Provisional
Probab=74.30 E-value=80 Score=32.31 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.2
Q ss_pred CCCCCC
Q 020328 259 RSGSLH 264 (327)
Q Consensus 259 r~~slp 264 (327)
|+.+.|
T Consensus 520 ~~~~~~ 525 (533)
T PRK09793 520 RHESAQ 525 (533)
T ss_pred hhhccc
Confidence 333333
No 84
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=74.28 E-value=13 Score=33.17 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HhhcchhhhhhHHHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT-ILRGRSKLIGDEFQS 192 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~-~v~~dls~ig~Dv~~ 192 (327)
+.|.+.+..+-+.|..-|+....++.+-.++++.=-+.|. -+++|++.+...++.
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444443333332 357777777776666
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.23 E-value=41 Score=32.77 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=26.4
Q ss_pred chhhhhhhhHHHHHHHHHhhhHHHHHHHHHH---HHHHHHhhhhhhhhHH
Q 020328 117 DMMFATRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVN 163 (327)
Q Consensus 117 DlMfVTKRnmsnAv~svtKqLeqVs~sLaaa---KrHLsqRId~vD~kLD 163 (327)
+-|--....|.+-.+.+.++++.+.+.+... +..|..+|.++....+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666667777766666554443 3445555555554433
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=74.10 E-value=15 Score=35.31 Aligned_cols=56 Identities=9% Similarity=0.240 Sum_probs=34.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
+|+.+|.+++-.....+.+++++..++..++.+..++..++..+..|+..+..++.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ 66 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES 66 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666655555555554443
No 87
>PRK09793 methyl-accepting protein IV; Provisional
Probab=74.09 E-value=82 Score=32.24 Aligned_cols=30 Identities=7% Similarity=0.068 Sum_probs=11.4
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (327)
++..-++.+....++|.+-.+++.+.+.++
T Consensus 279 eia~~~~~ls~~~e~qa~~~~~~~~s~~~~ 308 (533)
T PRK09793 279 EIVAGNNDLSSRTEQQAASLAQTAASMEQL 308 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444433333333333333
No 88
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=73.90 E-value=30 Score=36.97 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=33.1
Q ss_pred Cchhhhhhhh--HHHHHHHHHhh---hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 020328 116 PDMMFATRRS--LSDACNSVARQ---LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (327)
Q Consensus 116 SDlMfVTKRn--msnAv~svtKq---LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~ 177 (327)
+||+.||-|. |.+-+..+-|. |.+.-..|......|..+++.+...|....+-....+.+..
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888665 33333333333 33334445555555666667766666555544444443333
No 89
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.83 E-value=84 Score=29.92 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 020328 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (327)
Q Consensus 160 ~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (327)
.-|.|...-.....+|=...-+.|-+|..|+..+..++...+.--.....+=...-..+.-|=+++.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555445555566666666666666666555555444443333344444444443
No 90
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=73.81 E-value=64 Score=36.76 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 020328 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (327)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (327)
...++++..+..++.....+...+..-+..++.++..++..-.....-+.
T Consensus 866 ~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444333333333
No 91
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.79 E-value=43 Score=34.78 Aligned_cols=90 Identities=13% Similarity=0.161 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020328 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLS-------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sLaaaKrHLs-------qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~ 194 (327)
-++-+-++.+..-++|..|...+++.|++|. .+.+.++..+.|.+..-+++..+...-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677788888888899999999999998887 567778888888888888888888777777777777777777
Q ss_pred HHHHHHHHHHHHhhhhh
Q 020328 195 DIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQ 211 (327)
+.+..+|.-+.+..++-
T Consensus 238 ~~Ias~e~~aA~~re~~ 254 (420)
T COG4942 238 NEIASAEAAAAKAREAA 254 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666554443
No 92
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=73.60 E-value=12 Score=29.83 Aligned_cols=78 Identities=15% Similarity=0.320 Sum_probs=40.7
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020328 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (327)
Q Consensus 119 MfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (327)
|+-+++-+.+...-++..+......-...++.+..++++.=.+||=. +|+|....+. -+...+.-+.
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~-------~L~~~r~kl~ 67 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKA-------VLARTREKLE 67 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHH-------HHHHHHHHHH
Confidence 34444555555555555555555555556666666666555555433 2333322222 2444455556
Q ss_pred HHHHHHHHhhh
Q 020328 199 TLESKLIEIEG 209 (327)
Q Consensus 199 ~Le~Ki~~ie~ 209 (327)
.||.||..+|.
T Consensus 68 ~LEarl~~LE~ 78 (79)
T PF04380_consen 68 ALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHhc
Confidence 66666666654
No 93
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.97 E-value=45 Score=31.27 Aligned_cols=81 Identities=12% Similarity=0.266 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
+....+.++++|......+..+|. +++.++..++....=.+..+++++.+..+...+..+.+..+.-...|+..|.
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~~----~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQKQ----QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554432 3444444455555555555555555555555555555555555555555555
Q ss_pred Hhhhh
Q 020328 206 EIEGK 210 (327)
Q Consensus 206 ~ie~k 210 (327)
.+..+
T Consensus 98 ~l~~~ 102 (264)
T PF06008_consen 98 NLQDN 102 (264)
T ss_pred HHHHH
Confidence 55443
No 94
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=72.74 E-value=20 Score=36.10 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=18.9
Q ss_pred CCchhhhhhhhHHHHHHHHHhhhHHHH
Q 020328 115 LPDMMFATRRSLSDACNSVARQLEDVY 141 (327)
Q Consensus 115 ~SDlMfVTKRnmsnAv~svtKqLeqVs 141 (327)
+...+-.||.-|..--+.+++.||.+.
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777776554
No 95
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.26 E-value=20 Score=29.66 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (327)
|+.+|.+=|+++..==+|-+.|+..|++-- .+.+--|+|++.++.+++-
T Consensus 12 a~~QLrafIerIERlEeEk~~i~~dikdvy----~eakg~GFDvKa~r~iirl 60 (85)
T COG3750 12 AAGQLRAFIERIERLEEEKKTIADDIKDVY----AEAKGHGFDVKAVRTIIRL 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCccHHHHHHHHHH
Confidence 444444444444333345555555555544 4455579999999988753
No 96
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=71.95 E-value=29 Score=35.85 Aligned_cols=86 Identities=14% Similarity=0.251 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH------------HhhcchhhhhhHHHHHHHHHH--------HH
Q 020328 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TL 200 (327)
Q Consensus 141 s~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~------------~v~~dls~ig~Dv~~v~~~V~--------~L 200 (327)
..-+..-|++|..+-++|-.++|+.+.+.+..++||. .+..|++....|++.++.-+. .|
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3456677888888888888888888888888887764 334444444444444444432 45
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHH
Q 020328 201 ESKLIEIEGKQDITTLGVKKLCDRAR 226 (327)
Q Consensus 201 e~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (327)
|.-|+.|..-|+|=+.=-..+-+.-+
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL~e 306 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDLKE 306 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776554444433
No 97
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=71.72 E-value=38 Score=34.28 Aligned_cols=100 Identities=17% Similarity=0.338 Sum_probs=67.2
Q ss_pred cccCC-CchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020328 111 KGWKL-PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (327)
Q Consensus 111 KGws~-SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (327)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+=..+..|=..+...|.-...--+...++..++|..-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55554 36788899999999999999999999999888877777777776666655444444455566666555555555
Q ss_pred HHH----HHHHHHHHHHHHHHhhhh
Q 020328 190 FQS----VRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 190 v~~----v~~~V~~Le~Ki~~ie~k 210 (327)
|.+ +..++..+|-+=.+||.+
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 344444455444444443
No 98
>PRK00846 hypothetical protein; Provisional
Probab=71.65 E-value=24 Score=28.61 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 148 KrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
...+.+||+.|..++--|...++...+.|+.-+.. ++.++..+.-|-.|+..++.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~-------I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 45688999999999988888888888888766554 55555555555566666653
No 99
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=71.45 E-value=15 Score=28.30 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=22.7
Q ss_pred hhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHH
Q 020328 101 VAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISA 146 (327)
Q Consensus 101 GavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaa 146 (327)
+++||.|-==+|- -||+.+.+.+..+..++++.++....
T Consensus 13 a~~glL~aP~sG~-------e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 13 AAAGLLFAPKSGK-------ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHhCCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444444 36777777777777666665555444
No 100
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=71.37 E-value=73 Score=28.17 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHH-------------HHHHhhhhhhhhHHHHHHHHHHHHHHHHHh----hcchhhhh
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQR-------------QLSSKITSVDRDVNKIVEISQATQEEVTIL----RGRSKLIG 187 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKr-------------HLsqRId~vD~kLDeq~eis~~ik~eV~~v----~~dls~ig 187 (327)
++-++|..+...+..+.+.....-- +|..+|+.+...++++.+....+-.+|..+ .-+...+.
T Consensus 65 ~~~~~~~~~~~~l~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~ 144 (204)
T PF04740_consen 65 GLILLLEEYQEALKFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFI 144 (204)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHH
Confidence 3455555555555444444433321 333333333333333333333333333322 22345555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 020328 188 DEFQSVRDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (327)
..++..++.+...-.||...+.+.
T Consensus 145 ~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 145 DSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555666655543
No 101
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.35 E-value=72 Score=28.06 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020328 190 FQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 190 v~~v~~~V~~Le~Ki~~i 207 (327)
++.+...+..+...+..+
T Consensus 132 l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 132 LDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 102
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=71.28 E-value=55 Score=26.84 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q 020328 161 DVNKIVEISQATQEEVTILRGR 182 (327)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~d 182 (327)
|-+++..++..+...+..+...
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k 57 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQK 57 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 103
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=71.26 E-value=19 Score=29.24 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020328 190 FQSVRDIVQTLESKL 204 (327)
Q Consensus 190 v~~v~~~V~~Le~Ki 204 (327)
++.+-..+..|+.|+
T Consensus 44 lDa~~~~l~~l~~~V 58 (75)
T PF05531_consen 44 LDAQSAQLTTLNTKV 58 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 104
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=70.99 E-value=39 Score=26.55 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 143 sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
.|.+.+.-|..|+|.++.|+.-.....+.+..|=..+-.-+..-..++..++.-+..|...+++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888999999999999999888888888766666666777777888877777777766543
No 105
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=70.95 E-value=13 Score=36.88 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=7.3
Q ss_pred hhhheeeEEe
Q 020328 101 VAVGYGYVWW 110 (327)
Q Consensus 101 GavGYgYmwW 110 (327)
.++|+||.||
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 5678877666
No 106
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=70.88 E-value=14 Score=29.97 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=28.8
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020328 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (327)
Q Consensus 149 rHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (327)
|.+-.||++|. +|-++|+..|++=-.++++ -|+|+..++++|.-
T Consensus 7 r~~ieRiErLE---eEk~~i~~dikdVyaEAK~----~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 7 RQFIERIERLE---EEKKAISDDIKDVYAEAKG----NGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 34444555554 5555666666665555555 59999999999864
No 107
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=70.35 E-value=46 Score=36.86 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=31.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhccC
Q 020328 182 RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (327)
Q Consensus 182 dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (327)
.+.+-..++..+.+.+..+..++.++....+....+...|-+|...+.+.
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (910)
T TIGR00833 601 DVASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMGKL 650 (910)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455666666777777777777666555556666666666665543
No 108
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=70.15 E-value=3.3 Score=39.76 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCcchhhhHHHhhhheeeEE-ecccC--CCchhhhhhhhHHHHHHHHHh
Q 020328 62 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (327)
Q Consensus 62 ~aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmw-WKGws--~SDlMfVTKRnmsnAv~svtK 135 (327)
.+--++|+++|++. ...|.|+-+++-|+.++.=..-+++|+.|.-++| |.|-+ |..-+.+|.++.+|-.++.+.
T Consensus 125 d~sA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~T~~avaDelAaaA~ 202 (243)
T TIGR01916 125 DASAEKIRRGLRELTGVDVGVIITDTNGRPFREGQVGVAIGAAGLKVLRDWRGEKDLYGRELEVTEVAVADELAAAAN 202 (243)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCccccCCCCeeeeccCChHHHhcCCCcCCCCCeeeccHHHHHHHHHHHHH
Confidence 34568899999998 7788887777656654432335789999999998 77764 444578999988887666543
No 109
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.14 E-value=1e+02 Score=30.02 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~ 166 (327)
..|+.-.+.|..-++.|...++.++.-+.+..
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~ 183 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLR 183 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333
No 110
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.21 E-value=21 Score=28.85 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 145 aaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
...+|.+..+++.+-.+ .++++++|..--. ...+.+.+..++..+..-+..||.++..++..
T Consensus 35 d~~~r~l~~~~e~lr~~---rN~~sk~I~~~~~-~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 35 DQERRELQQELEELRAE---RNELSKEIGKLKK-AGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH-TTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544 3444444443211 11344444444555554444444544444443
No 111
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=69.17 E-value=1.1e+02 Score=31.50 Aligned_cols=8 Identities=13% Similarity=0.380 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 020328 126 LSDACNSV 133 (327)
Q Consensus 126 msnAv~sv 133 (327)
|.++++.+
T Consensus 252 La~s~n~m 259 (554)
T PRK15041 252 LAESLRHM 259 (554)
T ss_pred HHHHHHHH
Confidence 33333333
No 112
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=69.02 E-value=53 Score=34.14 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=61.8
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHH---HHHHhh
Q 020328 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC---DRAREL 228 (327)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC---~f~~~~ 228 (327)
..++..+-.++.+|.++-+.+++-...-+.||+.+..||.++|+--..|..|+..-......=+.=|..+. +++..+
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I 92 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSI 92 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhH
Confidence 36788888999999999999999999999999999999999999988888888755544443333333332 233344
Q ss_pred ccCCCcc
Q 020328 229 ENGRPTE 235 (327)
Q Consensus 229 ~~~~~~~ 235 (327)
-++...+
T Consensus 93 ~~~~v~e 99 (508)
T PF04129_consen 93 CEGPVNE 99 (508)
T ss_pred hcCCCCH
Confidence 4444443
No 113
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.23 E-value=57 Score=37.35 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=65.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
....-++|.++...+..+...+.+++..+..++++..+-.+...++..+.+. .+..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~---~~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRD---ELNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888888888888888888887777666666655544 3455566666667777788888866
Q ss_pred h-hhhHhHHHHHHHHHHH
Q 020328 210 K-QDITTLGVKKLCDRAR 226 (327)
Q Consensus 210 k-Qd~Tn~GV~~LC~f~~ 226 (327)
+ ..|-..+|..+++-+.
T Consensus 335 ~~~~ye~~~i~~~~~~~~ 352 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARVD 352 (1201)
T ss_pred HHHHHHHCCHHHHHHHHH
Confidence 5 5566777777766444
No 114
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.23 E-value=23 Score=37.13 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (327)
..+|+.|..-=+++..+++.++.++.+..+....++++-..+|..+..+..++..+++.|.
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999999999999999999988888888776654
No 115
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=68.11 E-value=64 Score=32.07 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=16.8
Q ss_pred HhhhHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 020328 134 ARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (327)
Q Consensus 134 tKqLeqVs~sLaaa-KrHLsqRId~vD~kLDeq~eis~~ik~eV~ 177 (327)
+..||+|.+.+... --.|...|..+...|++|+.-.+..+++|.
T Consensus 54 A~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~ 98 (301)
T PF06120_consen 54 ADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKID 98 (301)
T ss_pred HHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443321 223333333333333333333333333333
No 116
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=67.83 E-value=11 Score=35.02 Aligned_cols=52 Identities=10% Similarity=0.305 Sum_probs=32.6
Q ss_pred hhhhhhhhHHHHHHHHHH--HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 154 KITSVDRDVNKIVEISQA--TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 154 RId~vD~kLDeq~eis~~--ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
||.++....+...++-+. +-+|+-++...|+++..|+++++.-...|+.+++
T Consensus 140 rl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 140 RLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444443333332 3467778888888888888888877777776665
No 117
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.39 E-value=79 Score=30.88 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=55.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (327)
Q Consensus 134 tKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (327)
.++|++.-+.|.+++.....++..|...+++.++-.+.+++||.-++-=- .-.+-+.+++ +..|...|..+-..|.-
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk-D~EYPvK~vq--Ia~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK-DHEYPVKAVQ--IANLVRQLQQLKDSQQD 138 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888886654321 1222233322 44444455555444444
Q ss_pred HhHHHHHHHH
Q 020328 214 TTLGVKKLCD 223 (327)
Q Consensus 214 Tn~GV~~LC~ 223 (327)
-..-+..+|+
T Consensus 139 Eldel~e~~~ 148 (258)
T PF15397_consen 139 ELDELNEMRQ 148 (258)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 118
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=67.20 E-value=48 Score=34.90 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=79.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHh--
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE-- 227 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~-- 227 (327)
.++|-|++|..+-+-..|--+.-+.|-.++.+--++...-...|-+.|+.-|-|-..+.-+-..--+-+.||-+.++.
T Consensus 136 ~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~ 215 (558)
T PF15358_consen 136 RVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDET 215 (558)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccC
Confidence 356777777777776777777777888888888888888889999999999998888887777778889999877653
Q ss_pred --hccCCCccceeccccCcccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 020328 228 --LENGRPTELVQASRYTLSRTTLELPGITPSSRSGSLHPLPLEPPSP 273 (327)
Q Consensus 228 --~~~~~~~~~~Q~~~s~s~~~ale~~~~~p~sr~~slpp~~~e~~sp 273 (327)
......+++-|-.-++-++.. +++.++++.+...|+.|.+|+-|
T Consensus 216 prrqe~e~qELeqkleagls~~~--l~p~~~~~g~~~p~~s~~~p~~~ 261 (558)
T PF15358_consen 216 PRRQEAEWQELEQKLEAGLSRSG--LPPTADSTGCPGPPGSPEEPPRP 261 (558)
T ss_pred cchhhhhHHHHHHHHhhhhhhcC--CCccccCCCCCCCCCCCCCCCCc
Confidence 122223444443333322222 23344444444333335555444
No 119
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=67.11 E-value=4.6 Score=33.39 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=12.0
Q ss_pred HHHhhhheeeEEecccC
Q 020328 98 VVIVAVGYGYVWWKGWK 114 (327)
Q Consensus 98 a~iGavGYgYmwWKGws 114 (327)
+++.++=++|.|||-|+
T Consensus 11 ~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556667899999773
No 120
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.90 E-value=49 Score=33.36 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA 171 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ 171 (327)
+.++.-.+.+.+.+..+.++|+.++.++.......+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 197 (457)
T TIGR01000 161 DKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNA 197 (457)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555555555555554444443
No 121
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=66.69 E-value=76 Score=26.54 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 020328 61 LLAEVSSVQQEL 72 (327)
Q Consensus 61 L~aQV~~LaqEl 72 (327)
|......+...|
T Consensus 32 l~~~~~~~~~~l 43 (202)
T PF01442_consen 32 LAEEIEALSERL 43 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 122
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=66.22 E-value=72 Score=28.82 Aligned_cols=89 Identities=11% Similarity=0.168 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHH--HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020328 135 RQLEDVYSSISAAQRQ--LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (327)
Q Consensus 135 KqLeqVs~sLaaaKrH--LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (327)
..=+++++.|....+| +.+||+.|....+...+-++.|..++.+++.+|..+- ..-+.|+..+...+.
T Consensus 9 ~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~----------~~~~~~~~~~~~~~~ 78 (188)
T PF10018_consen 9 EADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP----------DQADEKLKSIPKAEK 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhcccccccccc
Confidence 3334444555444444 4566777766666666666666666666655544433 222233344433333
Q ss_pred hHhHHHHHHHHHHHhhccCCCc
Q 020328 213 ITTLGVKKLCDRARELENGRPT 234 (327)
Q Consensus 213 ~Tn~GV~~LC~f~~~~~~~~~~ 234 (327)
..- -+..|..|++++.....+
T Consensus 79 ~~v-~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 79 RPV-DYEELLSYAHRISKFTSA 99 (188)
T ss_pred CCC-CHHHHHHHHHHHHHhcCC
Confidence 222 277888999886544333
No 123
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=66.15 E-value=1e+02 Score=28.79 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 020328 61 LLAEVSSV 68 (327)
Q Consensus 61 L~aQV~~L 68 (327)
|++++..+
T Consensus 135 ll~~~~~l 142 (291)
T TIGR00996 135 LLGSLTRL 142 (291)
T ss_pred HHHHHHHH
Confidence 44444443
No 124
>PRK02224 chromosome segregation protein; Provisional
Probab=65.96 E-value=55 Score=35.36 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=15.2
Q ss_pred hhHHHHHHHHH-------HHHHHHHhhhhhhhhHHH
Q 020328 136 QLEDVYSSISA-------AQRQLSSKITSVDRDVNK 164 (327)
Q Consensus 136 qLeqVs~sLaa-------aKrHLsqRId~vD~kLDe 164 (327)
.++++++.+.. .++.+..+++.+...|++
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 163 KLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 555555555555555544
No 125
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=65.92 E-value=1e+02 Score=27.72 Aligned_cols=80 Identities=13% Similarity=0.316 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH--------HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI--------VEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq--------~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V 197 (327)
+++..+.+-.|.-++...|+..+.-+..|+..++.++... .+.....-+-+..++ +.++.|+..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555554444431 112333333443333 34445566666666
Q ss_pred HHHHHHHHHhh
Q 020328 198 QTLESKLIEIE 208 (327)
Q Consensus 198 ~~Le~Ki~~ie 208 (327)
..|-..+--|.
T Consensus 95 ~nL~ssvTNin 105 (140)
T PF04513_consen 95 NNLTSSVTNIN 105 (140)
T ss_pred HHHHHHHhhHH
Confidence 66655555543
No 126
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=65.83 E-value=38 Score=40.92 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Q 020328 135 RQLEDVYSSISAAQRQLSSKITS 157 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~ 157 (327)
.+++++...|+.+|+||....++
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544443
No 127
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=65.69 E-value=33 Score=26.18 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 020328 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (327)
Q Consensus 127 snAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (327)
...++++.+.|+++...-...|+ ..|..+...||+..++.+++.-||..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~---~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRK---SLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567777777777744433444 456667788999999999999888766
No 128
>PRK10698 phage shock protein PspA; Provisional
Probab=65.23 E-value=59 Score=30.36 Aligned_cols=80 Identities=10% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH---------HHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA---------TQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~---------ik~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (327)
|..-...|+.-++....+-..|...++.|..|+.+.+.=-.. .+..|.++-. +.|..+--..+..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~-----~~~~~~a~~~f~rm 171 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD-----SGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchHHHHHHHH
Confidence 555555666666666666666677777777777665432222 2222333222 24445556677889
Q ss_pred HHHHHHhhhhhhhH
Q 020328 201 ESKLIEIEGKQDIT 214 (327)
Q Consensus 201 e~Ki~~ie~kQd~T 214 (327)
|.||+++|..-+..
T Consensus 172 E~ki~~~Ea~aea~ 185 (222)
T PRK10698 172 ERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHhHh
Confidence 99999999887764
No 129
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=65.14 E-value=28 Score=32.05 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 139 qVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
||+..|+.+-.+|.+.+|.....|++. ++...+++ ..++.+....+.++.-+.-|+..|+..+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~e---I~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDE---IKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655554444332 22222222 12345555666667667777777766543
No 130
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.09 E-value=88 Score=33.21 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=15.2
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 174 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+++.+++.++..+..+++.++.-+..++.++.++
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 435 NELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 131
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.94 E-value=81 Score=34.63 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=31.1
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 174 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
.+...-..++.++.++.+.++..-+.|..|++++.++|..-..-+..+
T Consensus 572 ~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 572 QQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666777777777777777777777777666666644
No 132
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.93 E-value=68 Score=26.22 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=47.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
++.+..|+.+..+.+...+=||.+++++=.....++++.++..+.|+..=..+...|..-..-+..|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777788888888888887777777777777777777777666655555444444444
No 133
>PRK02224 chromosome segregation protein; Provisional
Probab=64.89 E-value=1.5e+02 Score=32.10 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.5
Q ss_pred eeeeEc
Q 020328 8 LTFLVG 13 (327)
Q Consensus 8 v~ILvG 13 (327)
+++|+|
T Consensus 25 ~~~i~G 30 (880)
T PRK02224 25 VTVIHG 30 (880)
T ss_pred eEEEEC
Confidence 344444
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=64.84 E-value=1.3e+02 Score=29.79 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHH---HHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020328 123 RRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKI----VEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (327)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sLaaa---KrHLsqRId~vD~kLDeq----~eis~~ik~eV~~v~~dls~ig~Dv~~v~~ 195 (327)
.-.|.+--+.+.++++.+.+.+... +..|...+..+..--++. .+.-+.+|+++.+...+++....++..++.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666555444333 333444444443333332 112333344444444444444444444444
Q ss_pred HHHHHHHHHHHh
Q 020328 196 IVQTLESKLIEI 207 (327)
Q Consensus 196 ~V~~Le~Ki~~i 207 (327)
-+..++.+|...
T Consensus 233 ~l~~l~~~I~~~ 244 (312)
T smart00787 233 ELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 135
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.83 E-value=1.2e+02 Score=31.84 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 168 is~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
..+.++.|+.+++.+|..+..|+..++..|..|...|...-..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777788888888888777777655333
No 136
>PRK02119 hypothetical protein; Provisional
Probab=64.43 E-value=27 Score=27.59 Aligned_cols=36 Identities=6% Similarity=0.044 Sum_probs=26.5
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (327)
.+..||+.|..|+--|.......-+.|++-+..+..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~ 41 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDK 41 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888887777777777666655433
No 137
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.39 E-value=1.1e+02 Score=35.28 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=45.4
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 020328 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (327)
Q Consensus 119 MfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V 197 (327)
-..-|.++......+...+++.-+.+...+..+.-==..++....+..++...-+.+...++..+..+..+++.+..+.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777777777777766666554433334444444444444455555555555555555555554443
No 138
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=64.33 E-value=1e+02 Score=29.13 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=61.4
Q ss_pred chhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020328 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (327)
Q Consensus 117 DlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~ 196 (327)
++|=..-.++.+ .+..++.|..+.++.++++ +-++.++.+...|+..+.+=+.--++.+.--....+|..|-+++|+=
T Consensus 103 ~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ 180 (202)
T TIGR03513 103 TLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEE 180 (202)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544 6777788888999888888 77888899998888887775555454444444455567777777777
Q ss_pred HHHHHHHHHHh
Q 020328 197 VQTLESKLIEI 207 (327)
Q Consensus 197 V~~Le~Ki~~i 207 (327)
++.|-..|.++
T Consensus 181 ~~kLa~NL~sL 191 (202)
T TIGR03513 181 MEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHH
Confidence 77777766665
No 139
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=64.11 E-value=53 Score=40.02 Aligned_cols=80 Identities=10% Similarity=0.166 Sum_probs=65.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 129 Av~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
++.-+-..+.+..+.+..+||.|..|++.....++....-.....+--..++.+++....|++.++..+..||.|+...+
T Consensus 1362 ~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~ 1441 (1930)
T KOG0161|consen 1362 WKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE 1441 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555668888999999999999999999888888777777788888999999999999999999999887653
No 140
>PRK13694 hypothetical protein; Provisional
Probab=64.02 E-value=31 Score=28.55 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (327)
|..+|.+=|+++..==+|-++|+..|++=-.++++ -|+|++.++++|.-
T Consensus 10 a~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~----~GfD~K~~r~ii~l 58 (83)
T PRK13694 10 AKEQLRAFIERIERLEEEKKTISDDIKDVYAEAKG----NGFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHH
Confidence 44455444444443345667777777777777766 59999999998853
No 141
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=64.00 E-value=63 Score=37.22 Aligned_cols=62 Identities=11% Similarity=0.292 Sum_probs=39.5
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 149 RQLSSKITSVDRDVNKIVEISQATQEEV-TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 149 rHLsqRId~vD~kLDeq~eis~~ik~eV-~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
+|.-.+|+..-...|.+...+..++++. ..+..+++++..+++.+..-|..||.-+.++..+
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777776666666 5566666666666666666666666655555433
No 142
>PRK02793 phi X174 lysis protein; Provisional
Probab=63.32 E-value=26 Score=27.61 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=35.7
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
.+.+||..|..++--|...+...-+.|+.-+..+ +.++.-+..|-.|+..++
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Confidence 4778999999988888888888877777666654 444444444445555544
No 143
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=63.30 E-value=88 Score=29.64 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=63.5
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHHH--HHHHHHhhcchhhhhhHHHHH
Q 020328 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSV 193 (327)
Q Consensus 119 MfVTKRnmsnAv~svtKqLeqVs~sLaaaKrH---LsqRId~vD~kLDeq~eis~~i--k~eV~~v~~dls~ig~Dv~~v 193 (327)
.---+.++.+.|...-++++++.+.+..-|+. |.++|..+..+++..+...... +..|...-++.+. ++.+..+
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~f 168 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAF 168 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHH
Confidence 33456788999999999999988888887765 5578888888887766554443 3667777777666 5555544
Q ss_pred HHHHHHHHHHHHHhhhhhhhH
Q 020328 194 RDIVQTLESKLIEIEGKQDIT 214 (327)
Q Consensus 194 ~~~V~~Le~Ki~~ie~kQd~T 214 (327)
. -+|.|++++|..=+..
T Consensus 169 e----r~e~kiee~ea~a~~~ 185 (225)
T COG1842 169 E----RMEEKIEEREARAEAA 185 (225)
T ss_pred H----HHHHHHHHHHHHHHHh
Confidence 4 4567777777664443
No 144
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.28 E-value=1.4e+02 Score=28.57 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcC
Q 020328 61 LLAEVSSVQQELSHV 75 (327)
Q Consensus 61 L~aQV~~LaqElr~L 75 (327)
+.+|+.+|..++..|
T Consensus 86 l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 86 LESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777787777777665
No 145
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=63.05 E-value=14 Score=32.76 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.2
Q ss_pred HHHhhhheeeEEecc
Q 020328 98 VVIVAVGYGYVWWKG 112 (327)
Q Consensus 98 a~iGavGYgYmwWKG 112 (327)
++++++|-+|+||..
T Consensus 7 ~~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 7 LGLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445557778875
No 146
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.56 E-value=1.3e+02 Score=27.91 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaa---KrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~ 194 (327)
.|.+-...++.+|..+..+-..+ ..++..||..|..+|.+..-=...-...|..+...+..+..++...+
T Consensus 145 eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333211 23444444444444444433333333334444444444444443333
No 147
>PRK09110 flagellar motor protein MotA; Validated
Probab=62.49 E-value=51 Score=32.13 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=70.2
Q ss_pred hhhhHHHhhhheeeEEecc-----cCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---hhhhhhhHHHH
Q 020328 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (327)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqR---Id~vD~kLDeq 165 (327)
.++++++|++.+||++=.| |.++-+|-|-=-.+ ++.-++--+..+-.++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l 82 (283)
T PRK09110 5 IGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALL 82 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4567788888899998666 77888888876544 44557777899999999999998744 67777888888
Q ss_pred HHHHHHHHHH-HHHhhcchhhhhh
Q 020328 166 VEISQATQEE-VTILRGRSKLIGD 188 (327)
Q Consensus 166 ~eis~~ik~e-V~~v~~dls~ig~ 188 (327)
.+++...|++ +-.+..+++++.+
T Consensus 83 ~~l~~~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 83 YELLRKARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 9999888877 5555666666553
No 148
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=62.47 E-value=38 Score=34.89 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHhhhheeeEEecccCCCchhhhhhhhH---HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHH------HHHHHH
Q 020328 99 VIVAVGYGYVWWKGWKLPDMMFATRRSL---SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN------KIVEIS 169 (327)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnm---snAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLD------eq~eis 169 (327)
...|+++||. ---+|.|=+.-|+..+ .+.++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 4455666543 2334555554444444 77778888888888888888886 34445544333 222333
Q ss_pred HHHHHHHHHhhcchhhh
Q 020328 170 QATQEEVTILRGRSKLI 186 (327)
Q Consensus 170 ~~ik~eV~~v~~dls~i 186 (327)
+.++.+++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44444444444444444
No 149
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.13 E-value=28 Score=29.92 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 020328 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (327)
Q Consensus 139 qVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV 176 (327)
++...|..+|.+|.+-=+.|.+..++..++-..+.++-
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666555666666666666655554443
No 150
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=61.83 E-value=79 Score=25.32 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (327)
.+|-++|..+++.|.+-+++-...++...+=++.+++ ++.....+++-++.=+.++..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~----~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRS----TNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998888777666555544432 22222334555555555555554
No 151
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=61.40 E-value=44 Score=23.29 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=22.2
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020328 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (327)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~ 194 (327)
+.|+++...+-++..+...+..+|.+=..-+.+|...++..+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~ 47 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNAD 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666554444444444444443
No 152
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.21 E-value=46 Score=32.63 Aligned_cols=56 Identities=11% Similarity=0.259 Sum_probs=28.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
|++=|.++.+..+-.+.+++||..+...++.+...+++.+.-+..++.+|..++.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555555555555555555555444444444444444444444333
No 153
>PRK00295 hypothetical protein; Provisional
Probab=61.18 E-value=35 Score=26.57 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=32.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+..||+.|..|+--|...+...-+.|+.-+..+. .++.-+..|-.|+..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~-------~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIE-------RLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 4568888888888888777777777766666543 4444444444455443
No 154
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.17 E-value=20 Score=29.24 Aligned_cols=37 Identities=14% Similarity=0.364 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020328 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (327)
Q Consensus 146 aaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d 182 (327)
.+..+|..|++.++..++.+.+=.+.+.+++.+++..
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 155
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=61.12 E-value=36 Score=34.60 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhh
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVD 159 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD 159 (327)
++|+.++..|+++-.||.+-..+++
T Consensus 293 ~Nle~lt~~LA~as~~l~~l~~~l~ 317 (370)
T PLN03094 293 KEVEKLTRVAAEASEDLRRLNSSIL 317 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555555555555443333
No 156
>PRK10698 phage shock protein PspA; Provisional
Probab=61.01 E-value=1.3e+02 Score=28.04 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=27.9
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020328 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (327)
Q Consensus 172 ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (327)
..+.+..++..+.....-++.++.-+..|+.||.+...+++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666677777777777777777777765
No 157
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=60.97 E-value=49 Score=26.60 Aligned_cols=45 Identities=11% Similarity=0.263 Sum_probs=40.6
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 020328 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~ 166 (327)
--+||.+-..-|-+-|.|+.+...-.-.++..|||.+...+|+..
T Consensus 10 DpkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLE 54 (73)
T KOG4117|consen 10 DPKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLE 54 (73)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 347999999999999999999999999999999999999888764
No 158
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.94 E-value=1e+02 Score=33.13 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (327)
.-|...|.+-...|.++..--...|+-|...+..+..+.+....=++.-.++|..+|..+..+-.|++.=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888889999999999999999999999988887777777777889999999999999999999999999998
Q ss_pred HHHhhhhhhhH
Q 020328 204 LIEIEGKQDIT 214 (327)
Q Consensus 204 i~~ie~kQd~T 214 (327)
+.++...-+++
T Consensus 477 ~e~~~k~~~Rs 487 (594)
T PF05667_consen 477 LEKLPKDVNRS 487 (594)
T ss_pred HHhCCCCCCHH
Confidence 88887664443
No 159
>PRK03918 chromosome segregation protein; Provisional
Probab=60.91 E-value=1e+02 Score=33.13 Aligned_cols=12 Identities=0% Similarity=0.459 Sum_probs=4.6
Q ss_pred HhhhhhhhhHHH
Q 020328 153 SKITSVDRDVNK 164 (327)
Q Consensus 153 qRId~vD~kLDe 164 (327)
.+|+.+..++++
T Consensus 640 ~~i~~l~~~~~~ 651 (880)
T PRK03918 640 KRLEELRKELEE 651 (880)
T ss_pred HHHHHHHHHHHH
Confidence 344444333333
No 160
>PRK03918 chromosome segregation protein; Provisional
Probab=60.79 E-value=59 Score=34.95 Aligned_cols=63 Identities=13% Similarity=0.336 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH---HHHHHhhcchhhhhhHHHHHHHHHH
Q 020328 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIVQ 198 (327)
Q Consensus 136 qLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik---~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (327)
.++..++.+...++.+..+|+.+...+.+..++.+.+. .++.++..+++.+...+..+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~ 224 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE 224 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888889999998888888866655544332 3344444444444444444433333
No 161
>COG5283 Phage-related tail protein [Function unknown]
Probab=60.58 E-value=80 Score=36.87 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLs---qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (327)
|-+++...++--....+.+..||+-|+ .|.+.+-+.|+.++..-+..++|+.|+-+.+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566555555555555666666664 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHhH
Q 020328 203 KLIEIEGKQDITTL 216 (327)
Q Consensus 203 Ki~~ie~kQd~Tn~ 216 (327)
++.++...++.+-.
T Consensus 107 ~~~sas~q~~~a~~ 120 (1213)
T COG5283 107 KLRSLSGQFGVASE 120 (1213)
T ss_pred HHHHHHhhhchhhH
Confidence 99999999987743
No 162
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=59.86 E-value=45 Score=33.18 Aligned_cols=54 Identities=9% Similarity=0.285 Sum_probs=25.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
++.++|.++|..+.++..-.+.-++=++.+... |..-++.|+.-|..||.||..
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~ 386 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAK 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444333333334444333 444455555555555555544
No 163
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.82 E-value=1.2e+02 Score=26.33 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---HHhhcchhhhhhHHHHHH------
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV---TILRGRSKLIGDEFQSVR------ 194 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV---~~v~~dls~ig~Dv~~v~------ 194 (327)
..|++++..+++.++.+++.....-++. ...+-+-|++.......+++-+ ..+..++.....++...+
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999988888877655544 3445555666555555555322 123333344444443333
Q ss_pred --------HHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 020328 195 --------DIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (327)
Q Consensus 195 --------~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (327)
..|..|+.+|...|.....+..-....|+
T Consensus 137 ~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~ 173 (218)
T cd07596 137 KAAPGIKPAKVEELEEELEEAESALEEARKRYEEISE 173 (218)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555555555555554444444
No 164
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=59.80 E-value=26 Score=28.93 Aligned_cols=62 Identities=16% Similarity=0.383 Sum_probs=36.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 132 svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
+|++++|.+.+.|+..++ |++.|+.+|-.. +++..-+ .+++ .+...|...+...|.++..+.
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~~~-eLs~e~R-------~~lE---~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLRRR-ELSPEAR-------RSLE---KELNELKEKLENNEKELKLLR 63 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHccc-CCChHHH-------HHHH---HHHHHHHHHhhccHHHHHHHH
Confidence 588999999999988876 567787777543 2222211 1111 444555555555555555553
No 165
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.37 E-value=74 Score=31.25 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 139 qVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
+--..|...+.+|.+.|..+..+.++..+--...-.+.+..+.++.++.++.+++..-..-...+|++++
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666666666666666666666666677777777777777888888777777777777653
No 166
>PRK04325 hypothetical protein; Provisional
Probab=59.35 E-value=37 Score=26.82 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=34.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
.+..||+.|..|+--|...++..-+.|++-+..+ +.++.-+.-|-.|+.+++
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888877777776666554 444444444445555543
No 167
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.25 E-value=32 Score=32.57 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH--HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~e--V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
+.+..++....|.+++-+..+...+ .+.|-|| +.-=+..+..|-+|++.+++-|.-||.||+++|.|
T Consensus 133 ~~~~~~l~~~~~~l~~~~~~~q~~~------Ae~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 133 QSVVRALRSGSRFLKHGLKQLQRNL------AEAITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666555443333 3333344 22234567889999999999999999999999876
No 168
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.18 E-value=88 Score=33.19 Aligned_cols=42 Identities=5% Similarity=0.107 Sum_probs=18.6
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~ 192 (327)
+..+++.++.+++++.+-.+..+.+...++.+++.+..+++.
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=59.14 E-value=36 Score=32.39 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 171 ~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
..+.||..+|+.++....+++.+++--..|=..|++
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666555544444444
No 170
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.70 E-value=76 Score=30.55 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=61.4
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (327)
++.-++|.++.+|-....|...+.++..++..|..+.+-=+...-.+=.+|+..|..+...-+.+..|+..|-++.
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999988888877777777777766667888888888888888888887776644
No 171
>PRK00736 hypothetical protein; Provisional
Probab=58.66 E-value=37 Score=26.45 Aligned_cols=50 Identities=8% Similarity=0.224 Sum_probs=32.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+..||+.|..|+--|...++..-+.|+.-+.. |+.++.-+..|-.|+..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~-------i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKT-------VEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 45788888888888888877777777666655 344444444444555543
No 172
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=58.60 E-value=80 Score=24.26 Aligned_cols=61 Identities=10% Similarity=0.279 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 145 aaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
....+.|.+.|+..+..|... ...=-.+.-.+-+.+..+..++..++..+..|...+..+.
T Consensus 25 ~~~~~~L~~~i~~~~~eLr~~---V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 25 RQLENKLRQEIEEKDEELRKL---VYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555444332 2222234445555566666666666666666666666554
No 173
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=58.40 E-value=40 Score=27.87 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=37.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (327)
++.|-.+|+++.++| .||-+|-|+|-.+|.+..+-.++|+.+..+-..
T Consensus 28 ~~~ins~LD~Lns~L----D~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCL----DHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777766555 689999999999999999989998888754433
No 174
>PRK04098 sec-independent translocase; Provisional
Probab=58.28 E-value=30 Score=31.54 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (327)
.-|-.+...+++-+..+-..+..+|.++.+-|. +++--++..+..+.+.+.+..+|.
T Consensus 23 ~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 23 DKLPQAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677788888888888888888888887553 222222222333444444444554
No 175
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.51 E-value=1.2e+02 Score=25.94 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=57.8
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020328 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (327)
+..++.+.|+.|-.=| +-.+.=...+..|..++.+++..++....-.+..++++.+....+.....+...++..+..++
T Consensus 29 ~~~~~~~vin~i~~Ll-~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLL-QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred ccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444433 223444556777777888888888887777777777787777777777777777777777777
Q ss_pred HHHHHhhh
Q 020328 202 SKLIEIEG 209 (327)
Q Consensus 202 ~Ki~~ie~ 209 (327)
.++.....
T Consensus 108 ~~~k~~ke 115 (151)
T PF11559_consen 108 AKLKQEKE 115 (151)
T ss_pred HHHHHHHH
Confidence 77665544
No 176
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=56.49 E-value=1.8e+02 Score=29.24 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020328 189 EFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie 208 (327)
++..|+..+..|..||...+
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~ 344 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAE 344 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 177
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.20 E-value=43 Score=27.09 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=28.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020328 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (327)
Q Consensus 148 KrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (327)
...|-.||..|.+++--|...+..+-+-|++-+-.++
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~ 39 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVID 39 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999988888887777776665533
No 178
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=56.01 E-value=90 Score=23.86 Aligned_cols=64 Identities=9% Similarity=0.238 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR---DVNKIVEISQATQEEVTILRGRSKLIGDE 189 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~---kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (327)
+-+-|..+...|+.+...+..-++--...+-..+. --++..+++..|+.....++..|..+..+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888877776777766662 22333344444444444444444443333
No 179
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=55.84 E-value=1e+02 Score=26.53 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhHHHHHHHH-----HHHHHHHHhhhhhhhhHHHHHHHHHH
Q 020328 127 SDACNSVARQLEDVYSSIS-----AAQRQLSSKITSVDRDVNKIVEISQA 171 (327)
Q Consensus 127 snAv~svtKqLeqVs~sLa-----aaKrHLsqRId~vD~kLDeq~eis~~ 171 (327)
++.+.++-..|-++.-.+. ..+..|.++|+.+...|++..++...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555555555555554 57889999999999999999888887
No 180
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=55.69 E-value=71 Score=23.64 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=23.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020328 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (327)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (327)
+|++-..-+++..++..+|.++...=++.|..+...+..+...+..-.
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~ 56 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSN 56 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444445566666666665555555544444444444444433333
No 181
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.64 E-value=1.7e+02 Score=26.94 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHH---HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 020328 141 YSSISAAQRQLSSKIT-SVDRDVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (327)
Q Consensus 141 s~sLaaaKrHLsqRId-~vD~kLDeq~eis~~ik~e---V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (327)
-++|+.||++=..|=- .-.-.||++...-+..++. ...++...+....++..++..+..|+.++..++.++..-..
T Consensus 60 ~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 60 EEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667665544421 1233466666666666643 55566666777788888888888888888888887666666
Q ss_pred HHHHHHHHH
Q 020328 217 GVKKLCDRA 225 (327)
Q Consensus 217 GV~~LC~f~ 225 (327)
--..|...+
T Consensus 140 DY~~L~~Im 148 (161)
T TIGR02894 140 DYQTLIDIM 148 (161)
T ss_pred HHHHHHHHH
Confidence 555555544
No 182
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=55.48 E-value=71 Score=23.59 Aligned_cols=89 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH----HHHhhcchhhhhhHH
Q 020328 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE----VTILRGRSKLIGDEF 190 (327)
Q Consensus 115 ~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~e----V~~v~~dls~ig~Dv 190 (327)
|.+.|=.+...|..... +..++.+.+.+. .=+.+...|.....+++...+....+.+. ...++..++.+....
T Consensus 13 l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~-~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w 89 (105)
T PF00435_consen 13 LLDWLQETEAKLSSSEP--GSDLEELEEQLK-KHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRW 89 (105)
T ss_dssp HHHHHHHHHHHHCSCTH--SSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC--CCCHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 020328 191 QSVRDIVQTLESKLIE 206 (327)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ 206 (327)
+.|...+..-..+|.+
T Consensus 90 ~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 90 EALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC
No 183
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=55.41 E-value=38 Score=26.15 Aligned_cols=15 Identities=7% Similarity=0.472 Sum_probs=8.8
Q ss_pred HHHHhhhhhhhhHHH
Q 020328 150 QLSSKITSVDRDVNK 164 (327)
Q Consensus 150 HLsqRId~vD~kLDe 164 (327)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666655
No 184
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.34 E-value=25 Score=27.04 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=4.3
Q ss_pred hhhhhhhHHHH
Q 020328 155 ITSVDRDVNKI 165 (327)
Q Consensus 155 Id~vD~kLDeq 165 (327)
|+.+..++...
T Consensus 2 i~elEn~~~~~ 12 (55)
T PF05377_consen 2 IDELENELPRI 12 (55)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.33 E-value=77 Score=33.09 Aligned_cols=108 Identities=14% Similarity=0.243 Sum_probs=65.0
Q ss_pred CCchhhhhhhhHHH----HHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH
Q 020328 115 LPDMMFATRRSLSD----ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (327)
Q Consensus 115 ~SDlMfVTKRnmsn----Av~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv 190 (327)
.-|......+.|.. ....+...|++++..|..+...|....+.++-.=++..+ +++....++.-....|.++
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHHHHHHHHhCCCH
Confidence 44566666677644 667888889999999999999999988887643222222 3334444444444455556
Q ss_pred HHHHHHHHHHHHHHHHhh----------hhhhhHhHHHHHHHHHHH
Q 020328 191 QSVRDIVQTLESKLIEIE----------GKQDITTLGVKKLCDRAR 226 (327)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie----------~kQd~Tn~GV~~LC~f~~ 226 (327)
+.+......++.+++.++ ...+-...-+..+|+-+.
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls 370 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALS 370 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555555443 344444555555554443
No 186
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.22 E-value=67 Score=35.73 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (327)
|......+..+|.++|++|+....-......+ -+.++...+..+..|..||.+|..+-..|-.=|..+|+
T Consensus 38 id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~----------~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTr 107 (793)
T KOG2180|consen 38 IDSLIQKIQGEIRRVDKNLLAVVRTQENSGTR----------GKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITR 107 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccch----------hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444556778888888888765443332211 12234444444444444444444444444444444443
No 187
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=55.17 E-value=73 Score=27.29 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcC
Q 020328 61 LLAEVSSVQQELSHV 75 (327)
Q Consensus 61 L~aQV~~LaqElr~L 75 (327)
+..+++.+...++.|
T Consensus 31 ~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 31 LEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888888777
No 188
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=55.15 E-value=1.2e+02 Score=25.45 Aligned_cols=18 Identities=0% Similarity=0.320 Sum_probs=9.9
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 020328 128 DACNSVARQLEDVYSSIS 145 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLa 145 (327)
+-|..|..+|..+...+.
T Consensus 6 ~~v~~I~~~i~~i~~~v~ 23 (151)
T cd00179 6 EEVEEIRGNIDKISEDVE 23 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666555443
No 189
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.99 E-value=1.3e+02 Score=28.30 Aligned_cols=72 Identities=10% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (327)
Q Consensus 142 ~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (327)
+.+..-|.+|...++++-..+++...=-..-...-..+..++..+..|++.....-..|+.+|..+...=+|
T Consensus 64 d~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 64 DDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444444455555556666666677888888888888888877765444
No 190
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=54.58 E-value=1.5e+02 Score=27.66 Aligned_cols=116 Identities=27% Similarity=0.314 Sum_probs=65.6
Q ss_pred hhHHHHHHHHH--hhh-HHHHHHHHHHHHHHHHhh-------hhhhhhHHHHHHHHHHHHHHHHHhhcchhh--------
Q 020328 124 RSLSDACNSVA--RQL-EDVYSSISAAQRQLSSKI-------TSVDRDVNKIVEISQATQEEVTILRGRSKL-------- 185 (327)
Q Consensus 124 RnmsnAv~svt--KqL-eqVs~sLaaaKrHLsqRI-------d~vD~kLDeq~eis~~ik~eV~~v~~dls~-------- 185 (327)
|.|-+|...++ +.+ +...+.|-.||.+|.-=| +++=+.+|+...++..+.+++.++.....+
T Consensus 13 R~Lhdal~~l~~d~~~~~~~~~~ipdA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~~l~~~w~~l~~~~~~~ 92 (214)
T PF04344_consen 13 RQLHDALRELGLDPRLMEEAAEEIPDARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAEELKARWQRLMARELEP 92 (214)
T ss_dssp HHHHHHHHHHTHHHHH-HHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHcCCChhhHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 44555555543 333 556666777777664332 233344555566666666666555432222
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHh---hhhhhhHhHHHHHHHHHHHhhccCCCccceec
Q 020328 186 ---------IGDEFQSVRDIVQTLESKLIEI---EGKQDITTLGVKKLCDRARELENGRPTELVQA 239 (327)
Q Consensus 186 ---------ig~Dv~~v~~~V~~Le~Ki~~i---e~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (327)
+..-+..+.+....++..+-+| ..=||+|-+=|..++..++.+|..-..-+.--
T Consensus 93 ~e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~Aq~FQDLTGQ~IkKVv~~l~~vE~~L~~ll~~~ 158 (214)
T PF04344_consen 93 DEFRELAHETDAFLQQVEENAQQLRAQLTEIMMAQDFQDLTGQRIKKVVNLLQEVEERLVQLLVIF 158 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTT---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222333333344444444444 34499999999999999999888777666543
No 191
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.45 E-value=33 Score=30.09 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=39.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHH
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (327)
=.++++.|..|+-..+.++-.|-+||..--.-+..+++|+++-.-...+==+++..+... .|+..+|
T Consensus 34 Nee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 34 NEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 344555666666666666666666666666666666666666555444444444444433 6777777
No 192
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=54.38 E-value=4.2 Score=35.05 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcchhhhh-------hHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 157 SVDRDVNKIVEISQATQEEVTILRGRSKLIG-------DEFQSVRDIVQTLESKLIEIEGKQDI 213 (327)
Q Consensus 157 ~vD~kLDeq~eis~~ik~eV~~v~~dls~ig-------~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (327)
.+..++++..+-.+.+..+|.+...+++++. .-+..+...+..|..|+..++..++-
T Consensus 21 ~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 21 PISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333444444444444444444444444444 44445555555555666666665554
No 193
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=54.36 E-value=2.3e+02 Score=28.00 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH------HHHH
Q 020328 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI------VQTL 200 (327)
Q Consensus 127 snAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~------V~~L 200 (327)
.+++.+|+..|--+...+..+-.++.++++..-..|-.. ..+.+.|...|..=..+.++|..++.. +..|
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~L 170 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI----RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVL 170 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHH
Confidence 678889999999999999999999988877666655443 334455777777777788888887764 6677
Q ss_pred HHHHHHhhhh
Q 020328 201 ESKLIEIEGK 210 (327)
Q Consensus 201 e~Ki~~ie~k 210 (327)
|..|.+.|..
T Consensus 171 eqELvraEae 180 (271)
T PF13805_consen 171 EQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 194
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.36 E-value=1.9e+02 Score=27.59 Aligned_cols=44 Identities=9% Similarity=0.193 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (327)
|..-|+.....|..+...++.+..++++.+.|=...+..+.+..
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444333333
No 195
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=53.93 E-value=1.1e+02 Score=31.15 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcc-hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-SKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (327)
Q Consensus 143 sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d-ls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (327)
.+-..+|.+..+++++. .+.++++++|+.... -.++ .+.+..++..+++-+..||.++..++.+.+.
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777765 566777888866321 1123 4455555666665566666666666655443
No 196
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=53.93 E-value=22 Score=30.05 Aligned_cols=48 Identities=6% Similarity=0.268 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 172 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~i 172 (327)
++.+++..+..-|.++.+.+.+++..+..+.+.+.+++++-+++....
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999998887665543
No 197
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=53.30 E-value=48 Score=30.00 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=33.5
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020328 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (327)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (327)
.=|+.+...-++.-+|.+..++|...++..|+.+..++..+-.-|..||.
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777777777777777666666666666654
No 198
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.18 E-value=1.1e+02 Score=25.11 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=46.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
++.|..|+.+..+.+...+-||.+++++=.....+++.++.--..|+.+-..+..-|+.=..-+..|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777888888888888887777777777777666667777666666655555555544
No 199
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.82 E-value=65 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 179 LRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 179 v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
++....+...|-..++..+.+|=+||+.
T Consensus 44 L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 44 LKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3334445555566666666666666654
No 200
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=52.71 E-value=67 Score=32.73 Aligned_cols=65 Identities=14% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (327)
+-..+|.|..+|+++..+ .++++++|+... .-.++.+.+..++..+++-+..||.++..++.+-+
T Consensus 33 ld~~~r~l~~~~~~lr~~---rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 33 LDEERRELQTELEELQAE---RNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777665 455666665421 11224445555566666556666666666655533
No 201
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=52.69 E-value=1.1e+02 Score=30.91 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=15.5
Q ss_pred cccccccchhhccccchhhHHH
Q 020328 296 RPLASRSSMELQNWGSHQGVLR 317 (327)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~ 317 (327)
|.|..|..|++-.||.|.++-|
T Consensus 239 ~AlG~~~~mdvt~eG~~s~~~~ 260 (330)
T PF07851_consen 239 RALGKRHNMDVTVEGFQSWMWR 260 (330)
T ss_pred HHhccCccceeeecccccchhc
Confidence 4566777777777777777655
No 202
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=52.43 E-value=77 Score=30.31 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH-----HH
Q 020328 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL-----IE 206 (327)
Q Consensus 132 svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki-----~~ 206 (327)
++-+|++..-+.=++-|.++..-.+.++.++.+.+..-+.+-..-+.+-.....-..|+..+++--.+|-... .+
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyyr 85 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPPAGQYYR 85 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCccceEE
Confidence 4555666555555555555554444444444433333222221111111111122233444444444444333 24
Q ss_pred hhhhhhhHhHHHHHHHHHHHhhccCC
Q 020328 207 IEGKQDITTLGVKKLCDRARELENGR 232 (327)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~~ 232 (327)
..++=++..+++.+|..|+..++-+-
T Consensus 86 y~~~w~~~~Q~vv~l~alv~~Let~~ 111 (226)
T KOG3067|consen 86 YNGHWRRSTQRVVSLPALVAWLETGT 111 (226)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhcc
Confidence 45567888999999999999888773
No 203
>PRK11032 hypothetical protein; Provisional
Probab=52.41 E-value=64 Score=29.36 Aligned_cols=52 Identities=13% Similarity=0.344 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH----hhcchhhhhhHHH
Q 020328 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI----LRGRSKLIGDEFQ 191 (327)
Q Consensus 137 LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~----v~~dls~ig~Dv~ 191 (327)
|++|.+.|...+..|..=|+.....+.+ ..+.|++|+.. +++||+++...++
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~~~---~~elT~dEl~lv~~ylkRDL~ef~~~~~ 67 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRVDA---AGELTRDEVDLITRAVRRDLEEFARSYE 67 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555445554444444 44446666544 5777777766443
No 204
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=52.01 E-value=1e+02 Score=30.23 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 141 YSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 141 s~sLaaaKrHLsqR---Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
+..|+..-||+.+. |..-|..|=+.-|.+-..-+||.+++.|-.+|.++++.|-.--..||.-|+.+|.+
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888765 55568888888899999999999999999999999999988888888888877765
No 205
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.63 E-value=1e+02 Score=27.87 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=55.5
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH-HHHHHHHhhhhhhhHhHHHHHHHHH
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT-LESKLIEIEGKQDITTLGVKKLCDR 224 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~-Le~Ki~~ie~kQd~Tn~GV~~LC~f 224 (327)
++...|+.++.+|.....+...+.+.-.++..|+..+|.-+..+-..-.+ |+..+..+...-+....+...|-+.
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~ 83 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKY 83 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888888888777777 7777777776655555555555443
No 206
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.61 E-value=1.7e+02 Score=28.87 Aligned_cols=87 Identities=7% Similarity=0.119 Sum_probs=54.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
..-+.+++..-..+...-+++.++-+.+++-+++....+..+.+=+.+.|..+-..-.++..+..+...-...+.++-..
T Consensus 214 ~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~ 293 (359)
T COG1463 214 AAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHG 293 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 33445555666666667777777778888888888888888887777777766655555555555555444444444443
Q ss_pred hhhHhHH
Q 020328 211 QDITTLG 217 (327)
Q Consensus 211 Qd~Tn~G 217 (327)
.......
T Consensus 294 ~p~~~~~ 300 (359)
T COG1463 294 LPTYAAN 300 (359)
T ss_pred cchhhhh
Confidence 3333333
No 207
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.43 E-value=62 Score=27.41 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 020328 123 RRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (327)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sLaaaKrHLs 152 (327)
||++-++++.+.+||.+.++.|.+-|+++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666555555555443
No 208
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.35 E-value=1.6e+02 Score=30.39 Aligned_cols=84 Identities=8% Similarity=0.147 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH---HHHHHhhhhhhh------------------hHHHHHHHHHHHHHHHHHhhcchh
Q 020328 126 LSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDR------------------DVNKIVEISQATQEEVTILRGRSK 184 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaK---rHLsqRId~vD~------------------kLDeq~eis~~ik~eV~~v~~dls 184 (327)
-+.++..+-++|+++.+.+++++ ..+..++.-++. .+.+..++...+.++..+++....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666555444333 334444433322 234455555666666666666666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 185 LIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
....+++.+++-+..|+.+|..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666666666666666665543
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.03 E-value=88 Score=27.42 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 185 LIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
++...+.++..-+..|+.||..+.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555544
No 210
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.95 E-value=1.7e+02 Score=25.62 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=51.7
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 020328 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (327)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (327)
..|++++..++|+.++|-..=-+.|-|=.+.|+.+.+--++++..-...+.+=..+..|.=--|.-.+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888877778888888889999888888888888887766666555444443333
No 211
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=50.93 E-value=15 Score=39.25 Aligned_cols=61 Identities=11% Similarity=0.270 Sum_probs=46.3
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020328 121 ATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (327)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sL-------aaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (327)
|-+++=.+|++.++++|..+.+-. ...=.++.+||+++++++|+...=.-.-+.|+-.+-+
T Consensus 364 AD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlle 431 (550)
T PF00509_consen 364 ADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLE 431 (550)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhc
Confidence 678999999999999999888754 2333468899999999999987655555666544433
No 212
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=50.85 E-value=1e+02 Score=26.70 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHhhhHHHH---HHHHHHHHHHHHhhhhhhhhHHHH
Q 020328 123 RRSLSDACNSVARQLEDVY---SSISAAQRQLSSKITSVDRDVNKI 165 (327)
Q Consensus 123 KRnmsnAv~svtKqLeqVs---~sLaaaKrHLsqRId~vD~kLDeq 165 (327)
|-.++|=.+++...||+.- +-|.+-|+.|....+.+...-+..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~ 56 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR 56 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555432 234444555544444444444333
No 213
>PLN03184 chloroplast Hsp70; Provisional
Probab=50.63 E-value=1.5e+02 Score=31.99 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHH
Q 020328 141 YSSISAAQRQLSSKITSVDRDVN 163 (327)
Q Consensus 141 s~sLaaaKrHLsqRId~vD~kLD 163 (327)
......+|..|..-|..+..+|+
T Consensus 561 ~~~~~eakN~lE~~iy~~r~~l~ 583 (673)
T PLN03184 561 KRDAVDTKNQADSVVYQTEKQLK 583 (673)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444555556666666666664
No 214
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=50.59 E-value=1.2e+02 Score=32.65 Aligned_cols=93 Identities=6% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCchhhhhhhhHHHHHH----H-------HHhhhHHHHHHHHHHHHHHHHhhhhhhh--------hHHHHHHHHHHHHH
Q 020328 114 KLPDMMFATRRSLSDACN----S-------VARQLEDVYSSISAAQRQLSSKITSVDR--------DVNKIVEISQATQE 174 (327)
Q Consensus 114 s~SDlMfVTKRnmsnAv~----s-------vtKqLeqVs~sLaaaKrHLsqRId~vD~--------kLDeq~eis~~ik~ 174 (327)
.-++.+.-+-+.|+++.+ . +..|+..|+.-+.-..+.|..||..+.. .|++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888877643 3 3334444444555556666666665543 23444445555556
Q ss_pred HHHHhhcchhhhhhHHHHHHHHH----HHHHHHHHH
Q 020328 175 EVTILRGRSKLIGDEFQSVRDIV----QTLESKLIE 206 (327)
Q Consensus 175 eV~~v~~dls~ig~Dv~~v~~~V----~~Le~Ki~~ 206 (327)
...++++.++.+..||+.|.... ..++.||+.
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdt 448 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDT 448 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccH
Confidence 66667777777777777766543 334445543
No 215
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=50.56 E-value=93 Score=33.51 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=13.0
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020328 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (327)
Q Consensus 171 ~ik~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (327)
+....+..+...++....+.+.+++.+..|
T Consensus 382 ~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 382 QLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334344444444444444555554433
No 216
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.37 E-value=55 Score=25.29 Aligned_cols=23 Identities=4% Similarity=0.148 Sum_probs=10.0
Q ss_pred HHHHHHHhhcchhhhhhHHHHHH
Q 020328 172 TQEEVTILRGRSKLIGDEFQSVR 194 (327)
Q Consensus 172 ik~eV~~v~~dls~ig~Dv~~v~ 194 (327)
+++++..+..++.++..+++.+.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE 26 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLE 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 217
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=50.28 E-value=1.8e+02 Score=31.69 Aligned_cols=117 Identities=10% Similarity=0.152 Sum_probs=69.9
Q ss_pred eEEecccCCC---chhhhhhhhHHH----HHHHHHhhh---HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 020328 107 YVWWKGWKLP---DMMFATRRSLSD----ACNSVARQL---EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (327)
Q Consensus 107 YmwWKGws~S---DlMfVTKRnmsn----Av~svtKqL---eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV 176 (327)
|-|--|-..+ |+|+---..|+. +-..+++-. +...+.+...-.||-|.+|.-|.+++.+..+...++.++
T Consensus 372 ~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 372 KRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred hhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443344443 566555555553 333444444 578888999999999999999999999999998888776
Q ss_pred HHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 020328 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (327)
Q Consensus 177 ~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (327)
..=.+-++.-..+.+.++.-.+.+-.-....+..+.-......-||.
T Consensus 452 ~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~ 498 (607)
T KOG0240|consen 452 LDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAV 498 (607)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544444444444444433333333233333334444445555654
No 218
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=50.21 E-value=1.5e+02 Score=33.94 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=72.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
-+.+++-|-|.-+-+...+++|.--=+....-+.+..+..+-...++.+.......|+.++..-+.-+++++.|+.++|.
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 45566777777676666666665555555555555556666666788888888888999999999999999999999999
Q ss_pred hhhhHhHHHHHHHHHH
Q 020328 210 KQDITTLGVKKLCDRA 225 (327)
Q Consensus 210 kQd~Tn~GV~~LC~f~ 225 (327)
+-|.+.+-|..|-+--
T Consensus 359 krd~al~dvr~i~e~k 374 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQEKK 374 (1265)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 9999988888776543
No 219
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=50.20 E-value=1.2e+02 Score=28.70 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHH-HHHHHHhhhhhhhhH-------HHHHHHHHHHHHH--H----HHhhcchhhhhhH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDV-------NKIVEISQATQEE--V----TILRGRSKLIGDE 189 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaa-KrHLsqRId~vD~kL-------Deq~eis~~ik~e--V----~~v~~dls~ig~D 189 (327)
.+..+.+..+.++++++.+.+-.. +++...||-++...+ ..+.++...++.. . .+.+..+..+.++
T Consensus 145 d~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~ 224 (318)
T TIGR00383 145 DSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDH 224 (318)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHH
Confidence 355567778888888887776442 333334444444443 3444444333221 1 2223334555557
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020328 190 FQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie 208 (327)
++.+.+++..+..+++.+.
T Consensus 225 ~~~l~~~~~~~~e~l~~l~ 243 (318)
T TIGR00383 225 ILSLLEMIETYRELLSSLM 243 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777663
No 220
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=49.90 E-value=34 Score=31.43 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 020328 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (327)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~ 192 (327)
+|.++.+.-.+|.+.|.+..++|+.|++++..
T Consensus 129 ~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 129 KLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred hHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444455555555555555444444443
No 221
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.86 E-value=73 Score=31.29 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGR 182 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLs---qRId~vD~kLDeq~eis~~ik~eV~~v~~d 182 (327)
+.++++.....|+...+.|+..+.+|. .+|+.+-.+.++...=...+++++......
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k 278 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK 278 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666777777666666665443 344444444444443344444444444444
No 222
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.84 E-value=2.1e+02 Score=34.16 Aligned_cols=14 Identities=14% Similarity=0.340 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhcC
Q 020328 62 LAEVSSVQQELSHV 75 (327)
Q Consensus 62 ~aQV~~LaqElr~L 75 (327)
..|++.-.+|+++|
T Consensus 1463 ~~q~~~s~~el~~L 1476 (1758)
T KOG0994|consen 1463 RSQMEESNRELRNL 1476 (1758)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555555
No 223
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=49.74 E-value=61 Score=30.40 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=45.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHHHHhhcchhhhhh
Q 020328 133 VARQLEDVYSSISAAQRQLSSKITSV---DRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (327)
Q Consensus 133 vtKqLeqVs~sLaaaKrHLsqRId~v---D~kLDeq~eis~~ik~eV~~v~~dls~ig~ 188 (327)
+.-.++|+..++..+|+=|+.-|+.+ |+|||.+..++..+.-++.-++-....++.
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~ 185 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNL 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44458899999999999999999987 889999999999999888777766555544
No 224
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.57 E-value=3e+02 Score=27.97 Aligned_cols=24 Identities=4% Similarity=0.282 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAA 147 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaa 147 (327)
..|++-.+++++|-|+=..++.-+
T Consensus 206 ~ema~lL~sLt~HfDqC~~a~~~~ 229 (412)
T PF04108_consen 206 QEMASLLESLTNHFDQCVTAVRHT 229 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888888877777743
No 225
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.55 E-value=90 Score=36.54 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH-HHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD-IVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 143 sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~-~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
.|...-+++..+...+++.+.++.+....++++...++.++++|...+..++. .+. ++.|+..+..+-+.-..-+.+.
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhH
Confidence 44455556677777788888888888888999999999988888888888887 555 8888887777766666666665
Q ss_pred HH
Q 020328 222 CD 223 (327)
Q Consensus 222 C~ 223 (327)
-.
T Consensus 1039 ~k 1040 (1293)
T KOG0996|consen 1039 EK 1040 (1293)
T ss_pred HH
Confidence 43
No 226
>PLN02867 Probable galacturonosyltransferase
Probab=49.47 E-value=85 Score=33.66 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 164 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 164 eq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+..+--+++-.|++..+-|...+ +..++.|++.+|.++...
T Consensus 117 ~~~~~~~~~~~~~~~~~~d~~~~---~~kl~am~~~~e~~~~~~ 157 (535)
T PLN02867 117 GSTESFNDLVKEMTSNRQDIKAF---AFRTKAMLLKMERKVQSA 157 (535)
T ss_pred hhhhHHHHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33333344444555555554444 556778888888887654
No 227
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.33 E-value=1.9e+02 Score=29.72 Aligned_cols=68 Identities=4% Similarity=0.084 Sum_probs=43.1
Q ss_pred chhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020328 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (327)
Q Consensus 117 DlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (327)
+||++-+.-|.+.-+-. ..|..-+|.|+.-++||-.-+++|+..+-..++-+.-.++.|.|+.+|.++
T Consensus 218 klR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 55566655555554433 345666666666667776666777766666666666666777776666665
No 228
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=49.17 E-value=1.3e+02 Score=24.25 Aligned_cols=54 Identities=4% Similarity=0.129 Sum_probs=30.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh
Q 020328 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (327)
Q Consensus 133 vtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i 186 (327)
+...|+.-++.|...-....+|++.+.....+-.++.+.+|.++.-+...+..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~l 76 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSL 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555566666666666666666666666655555444333
No 229
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=49.05 E-value=2.2e+02 Score=26.28 Aligned_cols=69 Identities=9% Similarity=0.161 Sum_probs=53.0
Q ss_pred ecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020328 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (327)
Q Consensus 110 WKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (327)
+.+|+.+. ..|.+|...+|..+|..+.++..+-.. .++.-+-|.|....+..+|. |-. +.++.+...|
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~-vlk-~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRA-VCK-KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHH
Confidence 46788888 699999999999999988888875544 46777888888888888887 333 6666666655
Q ss_pred H
Q 020328 190 F 190 (327)
Q Consensus 190 v 190 (327)
.
T Consensus 126 ~ 126 (201)
T cd07622 126 K 126 (201)
T ss_pred H
Confidence 4
No 230
>PHA01750 hypothetical protein
Probab=49.03 E-value=58 Score=26.31 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=22.7
Q ss_pred hhhhhhhhHHHHHHHHH-hhhHHHHHHHHHHH
Q 020328 118 MMFATRRSLSDACNSVA-RQLEDVYSSISAAQ 148 (327)
Q Consensus 118 lMfVTKRnmsnAv~svt-KqLeqVs~sLaaaK 148 (327)
+-|--|..+.||+..+- +-|+++-..|+++|
T Consensus 24 lYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 24 LYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566889999998754 45777777777776
No 231
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=49.02 E-value=1.4e+02 Score=34.03 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=64.0
Q ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh---------hhHH
Q 020328 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---------GDEF 190 (327)
Q Consensus 120 fVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i---------g~Dv 190 (327)
|.+.+...+=+.++.+||+.|+.-=-+-=..+++|-.. +..+-...+..+..-+||.+++.++..+ |+.+
T Consensus 735 ~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~-e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~ 813 (984)
T COG4717 735 EQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK-EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTV 813 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 56888888999999999997521100000011111111 1111111112222223333333333333 3345
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhccCCCccceec
Q 020328 191 QSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239 (327)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (327)
..++++-..|=.+|.++.-+=-..-.++..|-+.++..+..+.|..+|-
T Consensus 814 a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~ 862 (984)
T COG4717 814 AELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQE 862 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 5566666666677777666666667777777788888888888877765
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=49.01 E-value=48 Score=29.59 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020328 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (327)
Q Consensus 143 sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (327)
-+..++++-..+++.||.+|.+-+ ...++++|-....++.++-..+..+...+...+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888899999999999999875 6778888888888888888888877777766554
No 233
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=48.91 E-value=2.1e+02 Score=30.04 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=48.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI--VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq--~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
+.++.+.++-.++...+..+ ++|..|.+.+.+.+++. .++...++.++.+.-.++..+..+++....+...|+ +|.
T Consensus 29 eV~~~I~~~y~df~~~~~~~-~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~-~L~ 106 (593)
T PF06248_consen 29 EVHSMINKKYSDFSPSLQSA-KDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE-QLQ 106 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34444444444444444444 35566777777777333 225677777888888888888888887777766665 344
Q ss_pred Hh
Q 020328 206 EI 207 (327)
Q Consensus 206 ~i 207 (327)
++
T Consensus 107 ~i 108 (593)
T PF06248_consen 107 EI 108 (593)
T ss_pred HH
Confidence 33
No 234
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=48.84 E-value=92 Score=30.20 Aligned_cols=17 Identities=24% Similarity=0.318 Sum_probs=10.7
Q ss_pred CCCCCCCCCccchhhcc
Q 020328 275 XXXXXXXIPMDLIRLTG 291 (327)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ 291 (327)
+..+....||-.|+|-|
T Consensus 100 ~~~~~~~rpD~vI~LP~ 116 (304)
T PF02646_consen 100 DEDGNGLRPDFVIHLPG 116 (304)
T ss_pred cCCCCCcCceEEEEcCC
Confidence 34455677777777743
No 235
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=48.83 E-value=91 Score=28.16 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHH
Q 020328 140 VYSSISAAQRQLSSKITSVDRDVN 163 (327)
Q Consensus 140 Vs~sLaaaKrHLsqRId~vD~kLD 163 (327)
+-+.|-.+-++|+.-|+.|....+
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~hq~ 26 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQEHQE 26 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666544433
No 236
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.76 E-value=99 Score=33.28 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=66.8
Q ss_pred CCCchhhhhhhhHHHHH------HHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHhhcchh
Q 020328 114 KLPDMMFATRRSLSDAC------NSVARQLEDVYSSISAAQRQLSSKITSVDRD---VNKIVEISQATQEEVTILRGRSK 184 (327)
Q Consensus 114 s~SDlMfVTKRnmsnAv------~svtKqLeqVs~sLaaaKrHLsqRId~vD~k---LDeq~eis~~ik~eV~~v~~dls 184 (327)
+.-|.+|-..+.|++.+ ..+.+.|+..+..|..+..+|..-+++++-. |++..+=...++.=--.-+.+++
T Consensus 242 ~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~ 321 (557)
T COG0497 242 SALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321 (557)
T ss_pred hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45677777777776444 3567777777777777777777777777764 55554444444433333444444
Q ss_pred hhhhHHHHHHHHHHHH---HHHHHHhhhhhhhHhHHHHHHHHHHHh
Q 020328 185 LIGDEFQSVRDIVQTL---ESKLIEIEGKQDITTLGVKKLCDRARE 227 (327)
Q Consensus 185 ~ig~Dv~~v~~~V~~L---e~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (327)
.+-.-.+.++.=...| |.++..+|..-+..-.-....|+-...
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~ 367 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333 445556666666666666666665543
No 237
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.61 E-value=89 Score=36.58 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 020328 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (327)
Q Consensus 137 LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (327)
++.-...+..+-+|+++.|..+.+++++-..-...+.+.....+..+.+...+++.+...-..++.+++.+..+=+....
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344455666677777777777777776666666666666777777777777777777777777777766555555555
Q ss_pred HH
Q 020328 217 GV 218 (327)
Q Consensus 217 GV 218 (327)
|+
T Consensus 476 ~~ 477 (1293)
T KOG0996|consen 476 GI 477 (1293)
T ss_pred hh
Confidence 54
No 238
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.51 E-value=2.2e+02 Score=26.25 Aligned_cols=61 Identities=10% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
=++++...|..++.|+-+.++-...++.+-.+.-..+++...+++.+++-+...|-+-.++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555555544444555555555666665555555554443
No 239
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=48.46 E-value=4.4 Score=37.94 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCcchhh-hHHHhhhheeeEE-eccc--CCCchhhhhhhhHHHHHHHHHh
Q 020328 62 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGW--KLPDMMFATRRSLSDACNSVAR 135 (327)
Q Consensus 62 ~aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l-~a~iGavGYgYmw-WKGw--s~SDlMfVTKRnmsnAv~svtK 135 (327)
.+=.++|+++|.+. ...+.|+=.++.|+.+. .+. -+++|+.|.-|+| |.|- -|..-|-+|.+..+|-.++.+.
T Consensus 133 d~sA~~i~~~l~~~~g~~v~ViI~Dt~gr~~r-~G~~~vaig~~Gi~~~~d~~G~~d~~g~~L~~T~~~~aD~la~aa~ 210 (228)
T PF01996_consen 133 DASARRIREELKERTGKDVGVIITDTNGRPWR-LGQTGVAIGVAGIKPLRDYRGEKDLFGRELKVTPRAVADELASAAD 210 (228)
T ss_dssp HHHHHHHHHHHHHHHS---EEEEEEEEEETTE-ECEEEEEEEEESB-SEEE-TT-B-TTS-B-S--EEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCceEEEEECCCCcEEe-cCCccchhhccCCccccccCCCchhhhChhccCchhhhhHHHHHhh
Confidence 34567889999988 66666665553244332 333 4688999999988 7676 3666688999999988877654
No 240
>PRK10869 recombination and repair protein; Provisional
Probab=48.41 E-value=1.1e+02 Score=32.33 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCCchhhhhhhhHHHH------HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020328 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (327)
Q Consensus 114 s~SDlMfVTKRnmsnA------v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig 187 (327)
+.-|.+.-..+.|... ...+...|++++..|..+.+.|..-.+.++-.=++..++.+.+ ..+..++. ..|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl-~~l~~L~r---Kyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRL-SKQISLAR---KHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHHHHH---HhC
Confidence 3455666666766443 4557778888888888888888887777654333333332222 12222222 233
Q ss_pred hHHHHHHHHHHHHHHHH----------HHhhhhhhhHhHHHHHHHH
Q 020328 188 DEFQSVRDIVQTLESKL----------IEIEGKQDITTLGVKKLCD 223 (327)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki----------~~ie~kQd~Tn~GV~~LC~ 223 (327)
.+++.|-..-..++.++ ..++...+-.-.-+..+|+
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~ 362 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQ 362 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 4444444444455555544
No 241
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.37 E-value=2.2e+02 Score=31.66 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (327)
..+.++|..+.++++-+-....+..+...++.....+++-+...+.+.-..-..++...+-....++..+|--+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999998888888888888888888888888888888888888
Q ss_pred HHHhhhhhhhHhHHHHHHH
Q 020328 204 LIEIEGKQDITTLGVKKLC 222 (327)
Q Consensus 204 i~~ie~kQd~Tn~GV~~LC 222 (327)
+++....=+-.+.-+..+-
T Consensus 195 ~~~~~~ql~~~~q~~~~~~ 213 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQ 213 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8876655444444444443
No 242
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=48.37 E-value=81 Score=29.88 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=40.3
Q ss_pred chhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHHHHhhcchhhhhhHHHHHHH
Q 020328 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRD 195 (327)
Q Consensus 117 DlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~-ik~eV~~v~~dls~ig~Dv~~v~~ 195 (327)
|-|-.+||.|+++...+++.|..+++.=. .-|+.-+..|.+..+...++-.. -.+|...+.+-|...-.++++++.
T Consensus 48 ~~lv~~rkela~~~~~fs~al~~L~~~E~---t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~ 124 (219)
T cd07621 48 DKMTRKHKDVADSYIKISAALTQLATSEP---TPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKD 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 33445677777777777777777766522 13333333333333333333222 224555555556666666666654
Q ss_pred H
Q 020328 196 I 196 (327)
Q Consensus 196 ~ 196 (327)
+
T Consensus 125 ~ 125 (219)
T cd07621 125 L 125 (219)
T ss_pred H
Confidence 4
No 243
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=48.27 E-value=1.8e+02 Score=24.94 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=42.7
Q ss_pred CCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 020328 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (327)
Q Consensus 115 ~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~ 166 (327)
|.|-+--.|+.+..-+..+.+.|+.+.+++..-...+.++|...|+.+|...
T Consensus 3 ~~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~ 54 (212)
T TIGR02135 3 FDEELKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALE 54 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHH
Confidence 3455667788888889999999999999998877788888888888888775
No 244
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.18 E-value=2.1e+02 Score=30.82 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=17.1
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (327)
Q Consensus 175 eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (327)
|...++..+....+-++.-++-+..|..-+..+-..+|.
T Consensus 284 e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDr 322 (546)
T PF07888_consen 284 ENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDR 322 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433333
No 245
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=48.10 E-value=45 Score=33.43 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 020328 191 QSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~k 210 (327)
+.....+..|+.||+.+|..
T Consensus 168 ~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 168 KELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333344444555554443
No 246
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=48.08 E-value=1.7e+02 Score=31.44 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~ei 168 (327)
.+..++...+..-|+.--..+...=+.|..+|.+|.+++|-+.+.
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqt 380 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQT 380 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 566777777777777666667777788999999999998877543
No 247
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=48.06 E-value=1.8e+02 Score=26.31 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=30.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020328 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (327)
+.+.+.|+.+.+.+..=+.|...=+..|..=-+++.+=....+..+.++..-+..-+.+|..++.-+..+.++
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3333444444444444343333333333333333333444444445555555555555555555444333333
No 248
>PLN02678 seryl-tRNA synthetase
Probab=47.93 E-value=1.5e+02 Score=30.87 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 144 LaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
+-.-+|.+..+++.+..+ .++++++|... ..-.++.+.+..++..+..-+..||.++..++.+
T Consensus 38 ld~~~r~l~~~~e~lr~e---rN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKE---FNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777666654 45566666541 1222333444444455554455555555555444
No 249
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=47.93 E-value=2.1e+02 Score=25.83 Aligned_cols=58 Identities=7% Similarity=0.191 Sum_probs=35.6
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 020328 119 MFATRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (327)
Q Consensus 119 MfVTKRnmsnAv~svtKqLeqVs~sL-aaaKrHLsqRId~vD~kLDeq~eis~~ik~eV 176 (327)
+..--....+++..+.++++++.+.+ ...++..-.+|-.+...+..........++-+
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l 174 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVL 174 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445666777788888888888877 45555556666666555555544444444333
No 250
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.89 E-value=1.2e+02 Score=31.76 Aligned_cols=46 Identities=11% Similarity=0.334 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEIS 169 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLs---qRId~vD~kLDeq~eis 169 (327)
..+.+.+.++--+|+.+...|..-...+. .|++.+..+|.....+.
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777776555543 45555555555444433
No 251
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=47.88 E-value=2.3e+02 Score=27.18 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-HHHHHhhcchhhhhhHHHHHHHH----HHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ-EEVTILRGRSKLIGDEFQSVRDI----VQT 199 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik-~eV~~v~~dls~ig~Dv~~v~~~----V~~ 199 (327)
=|.++++.|-||+.++-..+++ .+.+..+|-+|=|+......... +|-..++..|.++.+++..|++- |.-
T Consensus 15 ~i~~~i~~vEkhFg~lC~~~a~----ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~R 90 (219)
T PF06730_consen 15 FIQDRITNVEKHFGELCQLFAA----YTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVER 90 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888776 45556677777775544443333 34556777899999999888754 555
Q ss_pred HHHHH
Q 020328 200 LESKL 204 (327)
Q Consensus 200 Le~Ki 204 (327)
||.|+
T Consensus 91 lE~KV 95 (219)
T PF06730_consen 91 LEAKV 95 (219)
T ss_pred HHHHh
Confidence 55555
No 252
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.87 E-value=1e+02 Score=28.43 Aligned_cols=57 Identities=12% Similarity=0.402 Sum_probs=27.0
Q ss_pred HHHhhhHHHHH----HHHHHHHHHHHhhhhhhhhHHHHHHHH---HHHHHHHHHhhcchhhhhh
Q 020328 132 SVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIVEIS---QATQEEVTILRGRSKLIGD 188 (327)
Q Consensus 132 svtKqLeqVs~----sLaaaKrHLsqRId~vD~kLDeq~eis---~~ik~eV~~v~~dls~ig~ 188 (327)
.|-+.|+.+.. .+..++++|...|+.+..+++...+++ +.+|++++.+..+|++|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 334456666666666666655544443 4445666666555555544
No 253
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=47.78 E-value=95 Score=27.07 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHhhcchh
Q 020328 131 NSVARQLEDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSK 184 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLsqRId~vD-------~kLDeq~eis~~ik~eV~~v~~dls 184 (327)
+.+..|++.+...+...|+++.+=-|+.| .++||..+-...+...+..++.|++
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45778888888888888888886666554 3556655555544444444444443
No 254
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=47.77 E-value=3.2e+02 Score=28.85 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=42.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHh-h----hhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 131 NSVARQLEDVYSSISAAQRQLSSK-I----TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLsqR-I----d~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
...-+.|++....|..+||++.++ | +..-+-+....+-.+.+.+++..++-|+..+...+..+...|..|..|..
T Consensus 410 ~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~ 489 (560)
T PF06160_consen 410 KEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTE 489 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555432 2 22222333444444445556666666666666666666666666666666
Q ss_pred Hhhhh
Q 020328 206 EIEGK 210 (327)
Q Consensus 206 ~ie~k 210 (327)
.|=.+
T Consensus 490 ~li~~ 494 (560)
T PF06160_consen 490 ELIDN 494 (560)
T ss_pred HHHHH
Confidence 55443
No 255
>PF05802 EspB: Enterobacterial EspB protein
Probab=47.60 E-value=1.9e+02 Score=29.17 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 146 aaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
-+-+.++..=+.+++.+++..++-++|-.--+++.+.++.+.+||...-+....|-..+..-..
T Consensus 147 Lq~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~ 210 (317)
T PF05802_consen 147 LQQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADAAQ 210 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999999999999999999999999999999999999877666666555544433
No 256
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=47.49 E-value=80 Score=30.64 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq 165 (327)
|..-..-+..+|+.+...|....+..++....|...|...
T Consensus 4 l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l 43 (304)
T PF02646_consen 4 LEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQL 43 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555554444444444333
No 257
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.23 E-value=3e+02 Score=27.29 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=15.2
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 175 eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
|...+|.++.....++...+.-+..++..+..++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 258
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=47.14 E-value=48 Score=28.01 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=11.1
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020328 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (327)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~ 191 (327)
+..+..+++++++...=...++++|..++.++.+....++
T Consensus 61 s~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~ 100 (133)
T PF06148_consen 61 STNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIE 100 (133)
T ss_dssp -------------HHHHHHHHHHHHHHHHHS-STTHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433333
No 259
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=47.04 E-value=10 Score=33.10 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=0.0
Q ss_pred ceeeeEcCcccceeeccCCCC
Q 020328 7 KLTFLVGAGILTSVLAKEGRL 27 (327)
Q Consensus 7 Kv~ILvGAG~~GSVl~knGkL 27 (327)
++..++.||++|+|+.++|.+
T Consensus 96 ~~~~I~vaglaGsIlar~r~~ 116 (158)
T PF09769_consen 96 GLGYIGVAGLAGSILARRRGI 116 (158)
T ss_pred ceeeeehhhhheeeeeccCcc
No 260
>COG1511 Predicted membrane protein [Function unknown]
Probab=47.04 E-value=2e+02 Score=31.71 Aligned_cols=105 Identities=12% Similarity=0.241 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHH-H-HHHHH-------HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSI-S-AAQRQ-------LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sL-a-aaKrH-------LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~ 194 (327)
+.++++.+.+++++-..+... . .+=+. ....+..+.+-+++.....+.+.+....+..-...+.+++..+.
T Consensus 147 ~~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 226 (780)
T COG1511 147 KAADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALT 226 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHHHh
Confidence 345566666666666555554 1 22222 22334444444444444444444433344444444444444444
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhh
Q 020328 195 DIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (327)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~ 228 (327)
.-+..+.+++..+....+.-+.|+..|-+.++.+
T Consensus 227 ~~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~~~i 260 (780)
T COG1511 227 SGLTTLTDGLNQLDSGLGTLAAGIGELKQGAEQL 260 (780)
T ss_pred hhhHHHhhhHHHHHhhhhHHhhhhHHHHHHHHHH
Confidence 4444444444444444444444444444444333
No 261
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.85 E-value=3.7e+02 Score=28.23 Aligned_cols=71 Identities=7% Similarity=0.128 Sum_probs=51.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 020328 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (327)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (327)
++.+-..|++...=+...+.+...++..+..+..+++..+..+.+.|.||.....--+.+...--.--.-+
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~i 437 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEI 437 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777778888888888999999999999999999998876555555555444433333
No 262
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.82 E-value=1.3e+02 Score=31.88 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik 173 (327)
++|++-++-+.++|+-+.+|+..++.|++++..=-+..+
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666655544333333
No 263
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.73 E-value=55 Score=36.98 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=47.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020328 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~ 196 (327)
+.=-|||++=-++|..-+++|++||+.|.+++-.+++..+.+.....-....+++..-.|+..+++
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888889999999999999999999988887777766655554455555555555555544
No 264
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.62 E-value=40 Score=35.57 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHH--HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 158 VDRDVNKIVEISQATQ--EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 158 vD~kLDeq~eis~~ik--~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
|+..+|++.+.++.++ +...++...|+.+..+++.+......+|.||+.+|..
T Consensus 58 V~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE 112 (475)
T PRK13729 58 VDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQD 112 (475)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555666666665555 4478888888888888888888888889998866554
No 265
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=46.16 E-value=3.7e+02 Score=28.04 Aligned_cols=67 Identities=7% Similarity=0.170 Sum_probs=42.7
Q ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHhhcchhhh
Q 020328 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-DVNKIVEISQATQEEVTILRGRSKLI 186 (327)
Q Consensus 120 fVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~-kLDeq~eis~~ik~eV~~v~~dls~i 186 (327)
=--|+.|++-+..+-+.+|.+.+.+...|+...+|==+... +|+.+..-......++.+++.-+..+
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999887433332 23333333333444455444444333
No 266
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=46.11 E-value=98 Score=30.18 Aligned_cols=93 Identities=12% Similarity=0.221 Sum_probs=69.3
Q ss_pred hhhhHHHhhhheeeEEecc-----cCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---hhhhhhhHHHH
Q 020328 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (327)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqR---Id~vD~kLDeq 165 (327)
.++++++|++.+||++=.| |.++-+|-|-=-.+ ++.-++.-++.+..++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtl--ga~lis~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l 82 (282)
T TIGR03818 5 IGLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAI--GAFIIANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSLL 82 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4566788888888887444 66677777765444 34457778889999999999999877 55677888888
Q ss_pred HHHHHHHHHH-HHHhhcchhhhhh
Q 020328 166 VEISQATQEE-VTILRGRSKLIGD 188 (327)
Q Consensus 166 ~eis~~ik~e-V~~v~~dls~ig~ 188 (327)
.+++...|+| +-.+..+++++.+
T Consensus 83 ~~la~~aR~~GllaLE~~v~~~~~ 106 (282)
T TIGR03818 83 YELLRKARREGLMAIESHIENPEE 106 (282)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8999999987 6666666666664
No 267
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=46.08 E-value=8.2 Score=40.32 Aligned_cols=18 Identities=56% Similarity=0.916 Sum_probs=15.2
Q ss_pred eeeEcCcccceeec----cCCC
Q 020328 9 TFLVGAGILTSVLA----KEGR 26 (327)
Q Consensus 9 ~ILvGAG~~GSVl~----knGk 26 (327)
+|+||||++|+-|+ |+||
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGR 69 (509)
T KOG1298|consen 48 VIIVGAGVAGSALAYALAKDGR 69 (509)
T ss_pred EEEECCcchHHHHHHHHhhCCc
Confidence 79999999998654 7887
No 268
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=46.03 E-value=2.6e+02 Score=30.06 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=64.5
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----------H------HHHHHhhcchhh
Q 020328 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT----------Q------EEVTILRGRSKL 185 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~i----------k------~eV~~v~~dls~ 185 (327)
++|-.-.-+..+-+-|+.+++.+.. ......+|.++|+.+|..++-.+.- + .+.-+...|+|+
T Consensus 336 A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~ 414 (533)
T COG1283 336 AAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEH 414 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHH
Confidence 3455555566777778888888887 7778888999998888765543321 1 234456667777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 020328 186 IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (327)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (327)
||+-++++ +.-.+. .++.+-.++-.|..-||++..
T Consensus 415 IgDiie~l---~~~~~k---k~~~~~~fse~~~~el~~l~~ 449 (533)
T COG1283 415 IGDIIERL---LELADK---KIANGRAFSEDGLEELDALFA 449 (533)
T ss_pred HHHHHHHH---HHHHHH---HHhcCCCCCHHHHHHHHHHHH
Confidence 77766663 232333 345677788888888887654
No 269
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=45.95 E-value=2.4e+02 Score=25.91 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=29.5
Q ss_pred CchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 020328 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (327)
Q Consensus 116 SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsq 153 (327)
.+-|.-.|+.+.+....+-+...+....|..+|+..-+
T Consensus 95 ~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 95 ASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888888888877643
No 270
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=45.86 E-value=1.1e+02 Score=22.08 Aligned_cols=9 Identities=56% Similarity=0.637 Sum_probs=3.2
Q ss_pred HHHHhhhhh
Q 020328 150 QLSSKITSV 158 (327)
Q Consensus 150 HLsqRId~v 158 (327)
.|...++.+
T Consensus 29 ~l~~~~~~l 37 (86)
T PF06013_consen 29 QLESSIDSL 37 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 271
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=45.47 E-value=85 Score=34.34 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=30.7
Q ss_pred cCCCchhhhhhh--hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 020328 113 WKLPDMMFATRR--SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (327)
Q Consensus 113 ws~SDlMfVTKR--nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~v 158 (327)
|.++|.-|...+ ..-+|+..+..+++|+.+-+..+|.-|.+=.+++
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l 59 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGL 59 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445555555554 2334555666799999999999999887664444
No 272
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.45 E-value=2.4e+02 Score=25.77 Aligned_cols=38 Identities=11% Similarity=0.377 Sum_probs=23.5
Q ss_pred cCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 020328 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (327)
Q Consensus 113 ws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsq 153 (327)
|+|+.-... .+.+.++.+.+.++++...++..+..|..
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567765554 44556666667776666666666655544
No 273
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.38 E-value=1.8e+02 Score=27.50 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.0
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 178 ILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 178 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
....++..|.+||+.|.+=|.+||.=|.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888899999999999999998664
No 274
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.27 E-value=1.7e+02 Score=28.90 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH---HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik---~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
++-+..-..-...+|.|...-..++..+++.++..+.++ +.++++++.+.++..+--.++..+.-+..|+....++
T Consensus 186 ~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 186 DQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 275
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=45.24 E-value=1.5e+02 Score=31.69 Aligned_cols=83 Identities=14% Similarity=0.349 Sum_probs=59.0
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020328 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (327)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (327)
+.|..+-..-..++.++.+.++.|..-|+.....|...-++++...+=+..+-+++..+ ...|.+...+.+--..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 56777777788888899999999998888888887766665555544444444555554 55677777777777777
Q ss_pred HHHHHHh
Q 020328 201 ESKLIEI 207 (327)
Q Consensus 201 e~Ki~~i 207 (327)
..+|..+
T Consensus 207 v~eLs~~ 213 (552)
T COG1256 207 VDELSQL 213 (552)
T ss_pred HHHHHhh
Confidence 7777655
No 276
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.20 E-value=1.4e+02 Score=27.11 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=43.4
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
.+...|+.++.+|.....+...+-+.-.++-.|+..+|.=+..+=..=.+|+..|..+-..-+....+...|
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l 89 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVL 89 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888887777777777776666555544333344444444444444433333333
No 277
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=45.04 E-value=1.7e+02 Score=27.84 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=26.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhh----------cchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 156 TSVDRDVNKIVEISQATQEEVTILR----------GRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 156 d~vD~kLDeq~eis~~ik~eV~~v~----------~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+.+.+-++..+++.+.||+++---- .+...-.+.++.|...|-++..||..+
T Consensus 6 ~~~~d~~~~l~~v~~~iK~~~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m~~~i~~~ 67 (205)
T PF12238_consen 6 DSSKDALKALKKVLDLIKENPPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLMKHKISHM 67 (205)
T ss_pred hhhHHHHHHHHHHHHHHccCCCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777776532111 111223344555555555555555544
No 278
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.67 E-value=2.4e+02 Score=25.49 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=29.5
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020328 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (327)
Q Consensus 172 ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (327)
..+++..++..+......+..++.-+..|+.||..+..+.+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777655
No 279
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=44.54 E-value=1.2e+02 Score=21.92 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
..|...|.+++.=...|+.+|+.=..++..+|..++....+
T Consensus 7 ~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 7 DELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555544444433
No 280
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=44.41 E-value=7.4 Score=33.51 Aligned_cols=12 Identities=0% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcc
Q 020328 171 ATQEEVTILRGR 182 (327)
Q Consensus 171 ~ik~eV~~v~~d 182 (327)
.+.+.+..+...
T Consensus 49 ~~~~~l~~a~~~ 60 (138)
T PF06009_consen 49 DANKALDDANNS 60 (138)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 281
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=44.39 E-value=59 Score=25.01 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=4.9
Q ss_pred HHHhhhHHHHHHH
Q 020328 132 SVARQLEDVYSSI 144 (327)
Q Consensus 132 svtKqLeqVs~sL 144 (327)
.+....+.+.+.+
T Consensus 30 ~l~~~~~~~~~~~ 42 (74)
T PF12732_consen 30 KLKDKAEDLKDKA 42 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 282
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=44.31 E-value=95 Score=31.07 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=26.7
Q ss_pred chhhhHHHhhhheeeEE-----ecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 020328 93 KYGVIVVIVAVGYGYVW-----WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAA 147 (327)
Q Consensus 93 ~y~l~a~iGavGYgYmw-----WKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaa 147 (327)
.+|++.++.-+|||-+- |+.-.- |-..+.+++.......++++.-+.+...
T Consensus 167 ~~Gl~l~i~~~g~Glv~iP~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 167 FWGLFLFIILLGYGLVAIPRDLWRSSNS----YFRAAKLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhccc----cchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 45665566678888642 653322 4444444444455555555554444444
No 283
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.30 E-value=1.5e+02 Score=30.58 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=54.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-----------HHHHHHhhcchhhhhhHHHHHHHH
Q 020328 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-----------QEEVTILRGRSKLIGDEFQSVRDI 196 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~i-----------k~eV~~v~~dls~ig~Dv~~v~~~ 196 (327)
.+...--+.|++--..+.....++..+++.++.++.-...+.... ...+.++..-+..++..+..++..
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555566666777777777765555554322 113555666666777777777777
Q ss_pred HHHHHHHHHHhhhhhhhHhH
Q 020328 197 VQTLESKLIEIEGKQDITTL 216 (327)
Q Consensus 197 V~~Le~Ki~~ie~kQd~Tn~ 216 (327)
...|+.++..++.+.+....
T Consensus 147 ~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 147 DREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888877777777555443
No 284
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=44.06 E-value=51 Score=27.57 Aligned_cols=63 Identities=11% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhhHHHhhhheee--EEe--cccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 020328 94 YGVIVVIVAVGYGY--VWW--KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (327)
Q Consensus 94 y~l~a~iGavGYgY--mwW--KGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis 169 (327)
..++++++.++|.. +|| .|| -.-.++.++++.+..++++.++=.
T Consensus 3 ~~~~vll~ll~~l~y~l~~g~~G~--------------------------------~~~~~l~~q~~~~~~e~~~l~~~n 50 (105)
T PRK00888 3 LLTLLLLALLVWLQYSLWFGKNGI--------------------------------LDYWRVNDQVAAQQQTNAKLKARN 50 (105)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcchhhhhh
Q 020328 170 QATQEEVTILRGRSKLIGD 188 (327)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~ 188 (327)
+..++||..++.|-.-+..
T Consensus 51 ~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 51 DQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHhhCcHHHHHH
No 285
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.94 E-value=47 Score=27.47 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=12.7
Q ss_pred hhhhhhhHHHHHHHHHhhhHHH
Q 020328 119 MFATRRSLSDACNSVARQLEDV 140 (327)
Q Consensus 119 MfVTKRnmsnAv~svtKqLeqV 140 (327)
|||- +...+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6665 55666666666555544
No 286
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=43.81 E-value=2.5e+02 Score=28.46 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 020328 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (327)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sLaaaKrHLsq 153 (327)
-.+++...+++=..|.+=++--..|.+|..+
T Consensus 201 l~~le~ema~lL~sLt~HfDqC~~a~~~~eg 231 (412)
T PF04108_consen 201 LHSLEQEMASLLESLTNHFDQCVTAVRHTEG 231 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455555555555555555555556555544
No 287
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=43.80 E-value=1.6e+02 Score=23.16 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDe 164 (327)
+.++...+...+.++.+....+|.++....+.+-.-|++
T Consensus 19 ~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~ 57 (127)
T smart00502 19 LEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNK 57 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 288
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=43.73 E-value=2.3e+02 Score=28.07 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=19.0
Q ss_pred CCCCC-CCCCCCCCCCCC-------CCCCCccchhhccccccccc
Q 020328 262 SLHPL-PLEPPSPSXXXX-------XXXIPMDLIRLTGRIVSRPL 298 (327)
Q Consensus 262 slpp~-~~e~~sps~~~~-------~~~~~~~~~~~~~~~~~~~~ 298 (327)
+|||- +.-|..+--+=| +..||||. +||-.|--|
T Consensus 165 ~LP~yqa~HPt~rCRtYGti~fnG~~l~iPMDi---~GRpaSTaL 206 (271)
T PF05549_consen 165 DLPPYQAVHPTARCRTYGTIEFNGSSLRIPMDI---RGRPASTAL 206 (271)
T ss_pred CCCcccccCCCcccccceeEEECCEeeeccccc---cCCCCcceE
Confidence 37776 444444433322 35799996 477666544
No 289
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.73 E-value=59 Score=32.17 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020328 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (327)
Q Consensus 145 aaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (327)
-.=|--|...||.|-++|+++.|.-.+.+.+..+-..+++.....++.++.-+..|-..|
T Consensus 104 DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 104 DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788999999999999999999999998887666666655555555554444444444
No 290
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.62 E-value=78 Score=31.06 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=7.0
Q ss_pred cchhhhhhhhHHHHH
Q 020328 28 SSVSDAVGGTLKIVS 42 (327)
Q Consensus 28 sdv~~~lsgalk~l~ 42 (327)
||+ ..+|-++|-+.
T Consensus 17 sDv-E~iSkalQr~a 30 (290)
T COG4026 17 SDV-EVISKALQRLA 30 (290)
T ss_pred chH-HHHHHHHHHhh
Confidence 444 34555555544
No 291
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.58 E-value=1.6e+02 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHH
Q 020328 143 SISAAQRQLSSKITSVDRDVNKIV 166 (327)
Q Consensus 143 sLaaaKrHLsqRId~vD~kLDeq~ 166 (327)
.+...-..+.++|..+...++++.
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555443
No 292
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=43.56 E-value=4.2e+02 Score=28.02 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=16.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 020328 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (327)
Q Consensus 133 vtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq 165 (327)
+...++.+.+....+.++|..+++.+...+.+.
T Consensus 90 ~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 90 LVAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555554443
No 293
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=43.55 E-value=2e+02 Score=32.94 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcc---------hhhhhhHHHHHHHHHHHHHHHHHHh-----------hh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGR---------SKLIGDEFQSVRDIVQTLESKLIEI-----------EG 209 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d---------ls~ig~Dv~~v~~~V~~Le~Ki~~i-----------e~ 209 (327)
+|++|++++...+|+..++-....+-|.+-... +--|++|..-=.+-..-+|.=|+.| ++
T Consensus 369 el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~y 448 (1102)
T KOG1924|consen 369 ELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKY 448 (1102)
T ss_pred HHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q ss_pred hh--hhHhHHHHHHHHHHHhhccCC---------------------------------CccceeccccCcccc----ccc
Q 020328 210 KQ--DITTLGVKKLCDRARELENGR---------------------------------PTELVQASRYTLSRT----TLE 250 (327)
Q Consensus 210 kQ--d~Tn~GV~~LC~f~~~~~~~~---------------------------------~~~~~Q~~~s~s~~~----ale 250 (327)
++ |+-..++..-|.=-...+.++ ++-..|+.+|-+-.| .+-
T Consensus 449 r~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~~~~~~~~iP 528 (1102)
T KOG1924|consen 449 RFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQLLPIDGGIP 528 (1102)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCcccCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020328 251 LPGITPSSRSGSLHPLPLEPPSPSXXX 277 (327)
Q Consensus 251 ~~~~~p~sr~~slpp~~~e~~sps~~~ 277 (327)
.||..|..+-..-||+|..||=|.-+.
T Consensus 529 ~PP~~pp~gG~g~pppPppPPlpggag 555 (1102)
T KOG1924|consen 529 PPPPLPPTGGTGPPPPPPPPPLPGGAG 555 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
No 294
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=43.40 E-value=21 Score=34.46 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcC-CCceEEEeCCCCCCCCcchhhhHHHhhhheeeEE-eccc--CCCchhhhhhhhHHHHHHHHH
Q 020328 63 AEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVW-WKGW--KLPDMMFATRRSLSDACNSVA 134 (327)
Q Consensus 63 aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmw-WKGw--s~SDlMfVTKRnmsnAv~svt 134 (327)
+--++|+++|++. ...+.|+-++|-|...+....-+++|+.|..=+| |+|- .|.--|.+|..+.+|-.++.+
T Consensus 127 ~SA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~t~vAIG~aGi~~l~d~rG~~D~~G~~L~vT~~avaDelAaaA 202 (245)
T PRK13293 127 ESAERIREGLEELTGKKVGVIITDTNGRPFRKGQRGVAIGVAGIPALWDWRGEKDLFGRELETTEVAVADELAAAA 202 (245)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCCcccccCCcceeeeccCchHHHhhcCCcCCCCCeeechHHHHHHHHHHHH
Confidence 4457889999998 7777777777656665555555688888877776 7775 345568999998888766554
No 295
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.36 E-value=2.5e+02 Score=25.47 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020328 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (327)
Q Consensus 140 Vs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (327)
|...|..=++++..-|+.-...-++..++-+..++++.+++....+|+.|
T Consensus 35 I~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555556666666666666666666666666666
No 296
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.24 E-value=3.1e+02 Score=26.97 Aligned_cols=75 Identities=7% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 020328 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (327)
Q Consensus 142 ~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (327)
+.|...++.|.+.++.+...-++..+-.+..++|..++...-.++-.+...++.-...++.+.++++..-+++..
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666666666665555555555555555444444445555554444444444444444444333
No 297
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=43.05 E-value=63 Score=30.04 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=22.0
Q ss_pred hhhhHHHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 020328 94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (327)
Q Consensus 94 y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRI 155 (327)
|+-.+++++|++-|+| .=++-..=.+-.++...++...=...+..-++++.+|++.+....
T Consensus 36 yGWyil~~~I~ly~l~-qkl~~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaAR~RmQEE~ 96 (190)
T PF06936_consen 36 YGWYILFGCILLYLLW-QKLSPSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAARRRMQEEL 96 (190)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554444 433322222223444444443334455667888888888766543
No 298
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.98 E-value=3.1e+02 Score=26.26 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~e 175 (327)
+-+=+-|+-+-.||.+--+++++-..||-.|+..|+.++.-.-|-....++.
T Consensus 91 q~~~~lctR~Q~Hl~~cA~aVA~dQn~lv~r~K~v~~s~~tLf~~~~~~qk~ 142 (217)
T KOG4515|consen 91 QPFFRLCTRLQEHLAVCAKAVAADQNKLVARCKSVEASMITLFEETRAHQKQ 142 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445779999999999999999999999999999999987665555555544
No 299
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.73 E-value=2.7e+02 Score=25.67 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 188 DEFQSVRDIVQTLESKLIEIEGKQDI 213 (327)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (327)
.|+.+-...+.-+|.|+.++|..-+.
T Consensus 159 ~~~~~a~~~fer~e~ki~~~ea~aea 184 (219)
T TIGR02977 159 GRSDEAMARFEQYERRVDELEAQAES 184 (219)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666677777777766544
No 300
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=42.54 E-value=2.5e+02 Score=31.91 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh------hhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSV------DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~v------D~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~ 195 (327)
+...+......+.++...+...++++...+... ...+++..+.....+.+..+.+..+..+...+.....
T Consensus 782 l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 857 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDAD 857 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555532222 2234444444444444444444444444444433333
No 301
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=42.50 E-value=65 Score=25.31 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (327)
+..+|..+++.++..++.+..-.+.+.+++.+++.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 302
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.44 E-value=40 Score=33.74 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 176 V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
+.++...+......+..+.+-+..||+++-+
T Consensus 160 ~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 160 IEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3333333344445566666667777777653
No 303
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.42 E-value=3.2e+02 Score=26.36 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqR 154 (327)
..|++..+.++..+++.+.+|...++|+.++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999998774
No 304
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=42.33 E-value=1.3e+02 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=21.7
Q ss_pred chhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 020328 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (327)
Q Consensus 117 DlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~ei 168 (327)
|.+-.=++.+...++.+-+....|-+.|..+...|+.=+++-+-...++.+-
T Consensus 36 ~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q~~~~ 87 (113)
T PF02520_consen 36 DQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILDNKSLTRQQQQEA 87 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCHHHHHHH
Confidence 3333333344444444444444444444444444444444444444333333
No 305
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.99 E-value=2.1e+02 Score=30.44 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=28.3
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 149 rHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+.|.+|-+++|.++++ .+..+=.++..+.++..++.+.++..+..|..+++.+
T Consensus 90 ~~L~~r~~~id~~i~~------av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 90 ERLQKREQSIDQQIQQ------AVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHhhhhHHHHHHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444333 3333334445555666666777776676776666544
No 306
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=41.80 E-value=53 Score=31.42 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=46.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH--------HHHHHhhhhhhhHhHHH
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--------SKLIEIEGKQDITTLGV 218 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le--------~Ki~~ie~kQd~Tn~GV 218 (327)
|-.+|.++|+.|...+..|..++..|.+.|-+++- ..++.-|..++ .+-..++...-.||.-+
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv---------~~~K~~~~~~~~~~~~~~~~~~~~~d~~D~aTNeDL 75 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQV---------KKQKRDVNSFDKSFWPKSSSKQAQIDMSDYATNEDL 75 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcccccccccccCcCCCccccccccchhH
Confidence 45788899999999999999999999999877763 34444444444 34455566666666644
Q ss_pred HHH
Q 020328 219 KKL 221 (327)
Q Consensus 219 ~~L 221 (327)
--|
T Consensus 76 VQL 78 (216)
T PF07957_consen 76 VQL 78 (216)
T ss_pred HHH
Confidence 333
No 307
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=41.60 E-value=3.7e+02 Score=27.16 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH--------------HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020328 128 DACNSVARQLEDVYSSISAAQRQLS--------------SKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLaaaKrHLs--------------qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ 185 (327)
+..+.+.+.+.++.+.|..+.+... ..|..|-.++.+.++-++.++.-|.++=.|+++
T Consensus 25 ~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~ 96 (383)
T PF04100_consen 25 ELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ 96 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665554433 334444455555555555555555444444433
No 308
>PRK01919 tatB sec-independent translocase; Provisional
Probab=41.44 E-value=1.8e+02 Score=27.01 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRI 155 (327)
..|-.+...+++-+.++-..+...|.++..-+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888887776554
No 309
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=41.41 E-value=1.1e+02 Score=30.26 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=34.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020328 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (327)
.++..+...|+++-......=.++++||++-..+|+...+=+...+..|..+++
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566666666666666666777777777666666665555555555555554
No 310
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=41.33 E-value=1.4e+02 Score=30.85 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=13.2
Q ss_pred CCCCC---CCCCCCCCCCCCCCC
Q 020328 260 SGSLH---PLPLEPPSPSXXXXX 279 (327)
Q Consensus 260 ~~slp---p~~~e~~sps~~~~~ 279 (327)
.-.|| |...+.++|++.++.
T Consensus 211 Vd~L~~l~~~~d~~~~~a~~~~~ 233 (391)
T COG2959 211 VDNLPLLDNAFDGAPSPANNVKL 233 (391)
T ss_pred HhhccccccccccCCCCcchhhh
Confidence 34555 557778888887663
No 311
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=41.09 E-value=2e+02 Score=26.46 Aligned_cols=82 Identities=11% Similarity=0.261 Sum_probs=54.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhhhH-----HHHHHHHHHHHHHHHHhhcchhhhhhH----HHHHHHHHHHHHHH
Q 020328 133 VARQLEDVYSSISAAQRQLSSKITSVDRDV-----NKIVEISQATQEEVTILRGRSKLIGDE----FQSVRDIVQTLESK 203 (327)
Q Consensus 133 vtKqLeqVs~sLaaaKrHLsqRId~vD~kL-----Deq~eis~~ik~eV~~v~~dls~ig~D----v~~v~~~V~~Le~K 203 (327)
+-++|..--..|..||.+|.+.|+.-..-+ +.+.-.-...-..|+++...|+.|..| +..+++.....+.=
T Consensus 5 l~~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eF 84 (157)
T PF04778_consen 5 LDKKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEF 84 (157)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555667888888888887765544 233333344556788888888888765 55666666667776
Q ss_pred HHHhhhhhhhH
Q 020328 204 LIEIEGKQDIT 214 (327)
Q Consensus 204 i~~ie~kQd~T 214 (327)
|.....+++|+
T Consensus 85 i~~~K~NpnY~ 95 (157)
T PF04778_consen 85 INKNKNNPNYA 95 (157)
T ss_pred HhhccCCccHH
Confidence 77777777777
No 312
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.83 E-value=2.8e+02 Score=28.09 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=9.3
Q ss_pred CcccceeeccCCC
Q 020328 14 AGILTSVLAKEGR 26 (327)
Q Consensus 14 AG~~GSVl~knGk 26 (327)
+|++..|.+++|.
T Consensus 67 ~G~v~~i~V~eG~ 79 (457)
T TIGR01000 67 NNAIKENYLKENK 79 (457)
T ss_pred CcEEEEEEcCCCC
Confidence 4777777777775
No 313
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=40.56 E-value=2.4e+02 Score=24.27 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020328 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (327)
Q Consensus 158 vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (327)
|.....+.-+-.+.|..|.-.++..+..+...-...-.++..+..+|.+|..=||.+
T Consensus 38 ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa 94 (121)
T PF06320_consen 38 LNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWA 94 (121)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 344444455555666666666666666666666666666666666666665544443
No 314
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=40.55 E-value=2.9e+02 Score=25.27 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik 173 (327)
.++++++..++.-.++++..... |-.+=.-.+...|++...++..+|
T Consensus 58 ~~l~~~l~~~a~~~~~~~~~~~~---~a~~e~~~l~~~L~ey~r~~~Svk 104 (216)
T cd07627 58 KSLSDLLAALAEVQKRIKESLER---QALQDVLTLGVTLDEYIRSIGSVR 104 (216)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544433 333334445555555555555554
No 315
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=40.51 E-value=3.6e+02 Score=26.34 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 143 SISAAQRQLSSKITSVDRD----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 143 sLaaaKrHLsqRId~vD~k----LDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
.|.....++.+.|+.+..+ +-+..+....+.+++..+...++++..++.++.........+...+..
T Consensus 18 ~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~ 88 (338)
T PF04124_consen 18 SLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISE 88 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333 233355555566666666666666666666666555555555544433
No 316
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=40.42 E-value=2e+02 Score=23.25 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=37.2
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh---hhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHH
Q 020328 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (327)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i---g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (327)
.+|-.+|.+.-+...-....+.+-+.+...+... |.|.+.+..-+..|-.+|..+|....-...-+..+|
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333332 246666666677777777777776666666666554
No 317
>PLN02320 seryl-tRNA synthetase
Probab=40.38 E-value=1.5e+02 Score=31.48 Aligned_cols=92 Identities=14% Similarity=0.259 Sum_probs=47.4
Q ss_pred ecccCCCchhhhhhhhHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020328 110 WKGWKLPDMMFATRRSLSDACNSVARQ-----LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (327)
Q Consensus 110 WKGws~SDlMfVTKRnmsnAv~svtKq-----LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (327)
||-. -|+=|. |.|-.....++.+- +|++- .+-..+|.+..+++.+. .+.++++++|+.. .-..+.+
T Consensus 63 ~~~m--lD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~-~ld~~~r~~~~~~~~lr---~ern~~sk~i~~~--~~~~~~~ 133 (502)
T PLN02320 63 WKAA--IDFKWI-RDNKEAVAINIRNRNSNANLELVL-ELYENMLALQKEVERLR---AERNAVANKMKGK--LEPSERQ 133 (502)
T ss_pred cccc--cCHHHH-HhCHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh--hCCCCHH
Confidence 6643 555554 44555444444432 33332 23344555666555554 4556677777652 2224455
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 185 LIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
.+..++..+++-+..||.++..++.+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666665555555555555543
No 318
>COG3910 Predicted ATPase [General function prediction only]
Probab=40.33 E-value=32 Score=33.04 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcC--CCceEEEeCCCCCCCCcchhhhHHHhhhheeeEEecccC
Q 020328 63 AEVSSVQQELSHV--PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWK 114 (327)
Q Consensus 63 aQV~~LaqElr~L--sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws 114 (327)
.-++.|+. .| .-|||++.|. +++| +.+++=+| |+||+|=---|-+
T Consensus 24 Pa~r~l~~---~LeF~apIT~i~GE--NGsG-KSTLLEai-A~~~~~n~aGg~~ 70 (233)
T COG3910 24 PAFRHLEE---RLEFRAPITFITGE--NGSG-KSTLLEAI-AAGMGFNAAGGGK 70 (233)
T ss_pred hHHHhhhh---hccccCceEEEEcC--CCcc-HHHHHHHH-HhhccccccCCCc
Confidence 34777776 45 7799999998 4444 56664344 5677776555543
No 319
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=40.31 E-value=20 Score=28.80 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=32.0
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 020328 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (327)
Q Consensus 118 lMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDe 164 (327)
+=|.||+..+. .++.+-++--+.|.+.=+.|.+||+.|.+=||+
T Consensus 24 lHY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 24 LHYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34788877764 355556666667777778899999999877764
No 320
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=40.07 E-value=3.6e+02 Score=26.14 Aligned_cols=91 Identities=10% Similarity=0.150 Sum_probs=60.6
Q ss_pred chhhhhhhhHHHHHHHHHhhhHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHH------------HHhhcch
Q 020328 117 DMMFATRRSLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEEV------------TILRGRS 183 (327)
Q Consensus 117 DlMfVTKRnmsnAv~svtKqLeqVs~sLaa-aKrHLsqRId~vD~kLDeq~eis~~ik~eV------------~~v~~dl 183 (327)
.+|+..=.+..+.+..+.++++++.+.+-. .+++.-.||-.+.+.+=.........++-+ .+.+.-+
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l 222 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYL 222 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHH
Confidence 466677788999999999999999976655 444577777777776655444433333222 2334445
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 184 KLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 184 s~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
..+.+|+.++..++..+..++..+
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~l 246 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSSL 246 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777665
No 321
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=39.81 E-value=83 Score=29.93 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 020328 190 FQSVRDIVQTLESKLI 205 (327)
Q Consensus 190 v~~v~~~V~~Le~Ki~ 205 (327)
|+.++..|..+|.++.
T Consensus 34 Ie~LK~~i~~~E~~l~ 49 (207)
T PF05546_consen 34 IEKLKKSIEELEDELE 49 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 322
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.79 E-value=1.4e+02 Score=27.56 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=46.1
Q ss_pred chhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH-HHHHHHHHHhhcchhhhhhHHHHHHH
Q 020328 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQSVRD 195 (327)
Q Consensus 117 DlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis-~~ik~eV~~v~~dls~ig~Dv~~v~~ 195 (327)
|-|--+|+.|++++..+++.|..+++.=..+-+-|+.=+..+.+-.+...++. .+-.++...+...|...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34556788999999999998887766433322223333333333222222222 23335666667777777777777766
Q ss_pred H
Q 020328 196 I 196 (327)
Q Consensus 196 ~ 196 (327)
+
T Consensus 108 ~ 108 (198)
T cd07630 108 M 108 (198)
T ss_pred H
Confidence 5
No 323
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=39.77 E-value=2.7e+02 Score=29.40 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~ 174 (327)
..||+..+-+|+|+.-.. ++..||+|-...++...-|-+..++
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n 159 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQN 159 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999987544 8889999999998888777777664
No 324
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=39.73 E-value=1.8e+02 Score=22.71 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=6.0
Q ss_pred HhhhHHHHHHHHHHHH
Q 020328 134 ARQLEDVYSSISAAQR 149 (327)
Q Consensus 134 tKqLeqVs~sLaaaKr 149 (327)
-.++++|.+.+...=+
T Consensus 9 ~~~v~~v~~im~~Ni~ 24 (89)
T PF00957_consen 9 QEQVEEVKNIMRENID 24 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 325
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.73 E-value=3e+02 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 020328 185 LIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
...++++.++..-..|..+|.+
T Consensus 167 ~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666555544
No 326
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=39.70 E-value=1e+02 Score=26.46 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=8.6
Q ss_pred HHHhhhhhhhhHHHHHHHH
Q 020328 151 LSSKITSVDRDVNKIVEIS 169 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis 169 (327)
+..++..++=.|++.+++.
T Consensus 49 ~I~~lr~~GfsL~eI~~ll 67 (131)
T cd04786 49 IISSAQQAGFSLDEIRQLL 67 (131)
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3334444444555544444
No 327
>PRK09039 hypothetical protein; Validated
Probab=39.57 E-value=4e+02 Score=26.54 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=14.0
Q ss_pred chhhcccccccccccccchhhcccc
Q 020328 286 LIRLTGRIVSRPLASRSSMELQNWG 310 (327)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (327)
.|++.|.-=.+|+....+ .-.||-
T Consensus 264 ~I~I~GHTD~~p~~~~g~-~~~N~~ 287 (343)
T PRK09039 264 VLRVDGHTDNVPLSGTGR-FRDNWE 287 (343)
T ss_pred eEEEEEecCCCCccCCCC-cccHHH
Confidence 377788877777654322 234663
No 328
>PRK04098 sec-independent translocase; Provisional
Probab=39.52 E-value=3e+02 Score=25.24 Aligned_cols=51 Identities=10% Similarity=0.366 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHH
Q 020328 122 TRRSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQAT 172 (327)
Q Consensus 122 TKRnmsnAv~svtKq--LeqVs~sLaaaKrHLsqRId~vD~--kLDeq~eis~~i 172 (327)
-||.++++-+.+-.. ++.+-+.+...|+.|.+-.++|.. .+|+..++....
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~ 93 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITA 93 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhh
Confidence 345555555444442 344555666677777777777766 555555554333
No 329
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=39.51 E-value=29 Score=24.07 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.0
Q ss_pred eeeEEecccCCCchhhhhhhhHHHH
Q 020328 105 YGYVWWKGWKLPDMMFATRRSLSDA 129 (327)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnmsnA 129 (327)
.-++.|+|++-.|-.+++..+|.++
T Consensus 21 ~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 21 EYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEEECCCCCccCccccHHHhCch
Confidence 3478999999999999999999876
No 330
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.30 E-value=1.6e+02 Score=31.65 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred cccCCCch--hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhH--------------------------
Q 020328 111 KGWKLPDM--MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV-------------------------- 162 (327)
Q Consensus 111 KGws~SDl--MfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kL-------------------------- 162 (327)
+|+|.+|| |-.-|--|..-.+-++-+-+.+-.++-.+|.+...+++.|.+++
T Consensus 363 q~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l 442 (622)
T COG5185 363 QGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSL 442 (622)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCce
Q ss_pred --------------------------HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 163 --------------------------NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 163 --------------------------Deq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
|+..+.....+++-..+.+++.+...|+..+++..+++|.+|.+.-.+
T Consensus 443 ~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~ 516 (622)
T COG5185 443 KINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSK 516 (622)
T ss_pred eeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
No 331
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=39.29 E-value=1e+02 Score=32.36 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 020328 188 DEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (327)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (327)
+|+..+-.+|..|+.+|++.-++-|+-..
T Consensus 317 ~~l~~le~~~~~mgPlid~~Le~idrk~~ 345 (462)
T KOG2199|consen 317 DDLLDLEAAVHQMGPLIDRKLEKIDRKHE 345 (462)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 45666666777777777666555444433
No 332
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=39.22 E-value=3.9e+02 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSIS 145 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLa 145 (327)
...++..+.+++.+|+++..+-
T Consensus 142 d~~ad~lE~~~~~ld~ls~~if 163 (316)
T PRK11085 142 EQLADEIENIYSDLEKLSRVIM 163 (316)
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666664
No 333
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.08 E-value=5.2e+02 Score=27.79 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcC
Q 020328 61 LLAEVSSVQQELSHV 75 (327)
Q Consensus 61 L~aQV~~LaqElr~L 75 (327)
|..|+..|++++++.
T Consensus 199 L~~ql~~l~~~l~~a 213 (754)
T TIGR01005 199 LAPEIADLSKQSRDA 213 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877665
No 334
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.92 E-value=1.7e+02 Score=25.54 Aligned_cols=43 Identities=21% Similarity=0.079 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 168 is~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
-....++|+......++.-...+++++.-+..++..+.+.+.+
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334455555555555666666777777777777777776665
No 335
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=38.85 E-value=5.4e+02 Score=32.01 Aligned_cols=45 Identities=18% Similarity=0.407 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHH---HHHHHHhhhhhhhhHHHHHH
Q 020328 123 RRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKIVE 167 (327)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sLaaa---KrHLsqRId~vD~kLDeq~e 167 (327)
+|.+.+-|..+.++++.+-..+... |.++..+|.++.+.+..+.+
T Consensus 931 ~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e 978 (1930)
T KOG0161|consen 931 KRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE 978 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444443333 22333444444444444333
No 336
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=38.78 E-value=1.5e+02 Score=35.14 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 137 LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
++|+..+++..||.| +.+..+|-+..+-...|.+++.-...||+.+..|+..|..++..|+.+++.|.
T Consensus 1227 i~~l~~~~~~lr~~l----~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQL----QALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHH----HHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444433 33444444444555556667777778888888888888899999988888663
No 337
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.78 E-value=1.1e+02 Score=30.61 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=15.9
Q ss_pred eccccCcccccccCCCCCCCCCCCCCCCC
Q 020328 238 QASRYTLSRTTLELPGITPSSRSGSLHPL 266 (327)
Q Consensus 238 Q~~~s~s~~~ale~~~~~p~sr~~slpp~ 266 (327)
++..+.+++|.-..+-++|..-+.-.+|.
T Consensus 201 ~~p~~~p~ip~wqi~~~sp~~~~~~~~~~ 229 (300)
T KOG2629|consen 201 VAPSSAPSIPSWQIQAESPHHSSNRMTST 229 (300)
T ss_pred CCcccCCCCchhhhccccchhhhccCCCC
Confidence 34445666676666666665434444454
No 338
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=38.77 E-value=1.3e+02 Score=30.64 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=43.2
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh---hhhH-HHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 020328 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDE-FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (327)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~v~~dls~---ig~D-v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (327)
.+|-.+|.+.-++..-.+..+.|-+.+...+.. -+.| .+.+..-+..|..+|..+|.+..-...-+..++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444544444444444444444444433322 2344 677777788888888888888887777777765433
No 339
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=38.73 E-value=4.1e+02 Score=28.21 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=20.9
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCccchhhccc
Q 020328 262 SLHPL--PLEPPSPSXXXXXXXIPMDLIRLTGR 292 (327)
Q Consensus 262 slpp~--~~e~~sps~~~~~~~~~~~~~~~~~~ 292 (327)
.|+.- =..-.+-.+..|....||-+|+|-|.
T Consensus 218 GL~~~~~y~~Q~~~~~~~g~~~rPDviV~LP~~ 250 (475)
T PRK10361 218 GLREGYEYETQVSIENDARSRMQPDVIVRLPQG 250 (475)
T ss_pred CCCcCCcceeeeeccCCCCCeeCCeEEEECCCC
Confidence 34544 23334555667878899999999875
No 340
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.72 E-value=3.2e+02 Score=25.30 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=32.8
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 020328 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (327)
Q Consensus 118 lMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~v 158 (327)
-..-.|+.+.+.+..+.|.+...+..|..+|+.--++=..+
T Consensus 96 ~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 96 KQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888999999999999999999999998877654444
No 341
>PLN03223 Polycystin cation channel protein; Provisional
Probab=38.47 E-value=1.5e+02 Score=35.55 Aligned_cols=91 Identities=25% Similarity=0.363 Sum_probs=59.8
Q ss_pred hhhhHH--HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020328 122 TRRSLS--DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (327)
Q Consensus 122 TKRnms--nAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (327)
.||.|. ||-+.++.-|+||. .|+-++..|...|+.|.-+.|-++.+++.-..+=+ - ..-|..-...|+.-=..
T Consensus 767 ~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~--~--~~~i~~g~~d~~~~~~~ 841 (1634)
T PLN03223 767 NRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNS--L--ETLINAGFTDIKAGQAA 841 (1634)
T ss_pred hhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccch--H--HHHHHhchhHHHhHHHH
Confidence 466665 67777777777775 47778888999999888888877766654432210 0 11222233445555567
Q ss_pred HHHHHHHhhhhhhhHhHH
Q 020328 200 LESKLIEIEGKQDITTLG 217 (327)
Q Consensus 200 Le~Ki~~ie~kQd~Tn~G 217 (327)
||.||++|-+||+.+...
T Consensus 842 ~~~~~~~il~kq~~al~~ 859 (1634)
T PLN03223 842 LEAKLDEILGKQQQALAA 859 (1634)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 889999999998876543
No 342
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.39 E-value=3.3e+02 Score=26.46 Aligned_cols=85 Identities=11% Similarity=0.200 Sum_probs=51.3
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH---h--hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh-------hH
Q 020328 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS---K--ITSVDRDVNKIVEISQATQEEVTILRGRSKLIG-------DE 189 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sLaaaKrHLsq---R--Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig-------~D 189 (327)
.++.-.+|+.-+.+||+.....|..+.+.|.. + +-.++..-....+....++.+..+++..+.... -+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 44556789999999999999999999877754 1 111222233344455555566666555554442 24
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020328 190 FQSVRDIVQTLESKLIE 206 (327)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ 206 (327)
+..++.-+..|+.+|..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555555555555554
No 343
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=38.35 E-value=2.1e+02 Score=26.43 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 020328 191 QSVRDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQ 211 (327)
..+...|..++.+|.+|+.++
T Consensus 138 ~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 138 KLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666554
No 344
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.07 E-value=2.5e+02 Score=27.60 Aligned_cols=76 Identities=12% Similarity=0.243 Sum_probs=46.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
++.++..=-.+|+.|..--..=..|-..+...+ ++.++-+.+++-+..++..++++...+.++..=...||.||..
T Consensus 126 aseit~~GA~LydlL~kE~~lr~~R~~a~~r~~-e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 126 ASEITQRGASLYDLLGKEVELREERQRALARPL-ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445554433322222333333333 4556788888888888888888888888888888888888863
No 345
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=38.01 E-value=3.6e+02 Score=27.86 Aligned_cols=78 Identities=10% Similarity=0.300 Sum_probs=44.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH--------------hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH----
Q 020328 128 DACNSVARQLEDVYSSISAAQRQLSS--------------KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE---- 189 (327)
Q Consensus 128 nAv~svtKqLeqVs~sLaaaKrHLsq--------------RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D---- 189 (327)
+.+..+-+...++.+++.+-|.++.. |.++|++.++ +.++.=++|+..++.+|..+.+-
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlN---d~~elHq~Ei~~LKqeLa~~EEK~~Yq 295 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLN---DLTELHQNEIYNLKQELASMEEKMAYQ 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33455555555555555555554444 3444443333 34455556666666666544443
Q ss_pred ----HHHHHHHHHHHHHHHHHhh
Q 020328 190 ----FQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 190 ----v~~v~~~V~~Le~Ki~~ie 208 (327)
...|++.++..-.||..||
T Consensus 296 s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 296 SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456667777778888888
No 346
>PRK10807 paraquat-inducible protein B; Provisional
Probab=37.93 E-value=88 Score=33.11 Aligned_cols=23 Identities=0% Similarity=0.133 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHH
Q 020328 141 YSSISAAQRQLSSKITSVDRDVN 163 (327)
Q Consensus 141 s~sLaaaKrHLsqRId~vD~kLD 163 (327)
-+.+.++=+++.+-+++++..++
T Consensus 438 ~~~l~~tL~~~~~tl~~l~~~l~ 460 (547)
T PRK10807 438 IEQATSTLSESQRTMRELQTTLD 460 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 347
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=37.62 E-value=3.1e+02 Score=26.65 Aligned_cols=36 Identities=11% Similarity=0.341 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 020328 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (327)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId 156 (327)
+.|..+-++-..++.++.+.++.|...++.....|+
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~ 162 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIK 162 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666555554443
No 348
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=37.57 E-value=3.3e+02 Score=30.56 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrH---LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (327)
+.+.-..+-.|++-+-++|.+...| |..=+|.+--+||+-......=...+..+..+.+....+|..++.+..--|.
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666788888888888877655 4445555555555544444444444444444444444444444444333333
Q ss_pred HHH
Q 020328 203 KLI 205 (327)
Q Consensus 203 Ki~ 205 (327)
||.
T Consensus 393 ki~ 395 (775)
T PF10174_consen 393 KIN 395 (775)
T ss_pred HHH
Confidence 333
No 349
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=37.46 E-value=2.4e+02 Score=24.02 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 127 snAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
.+..-+++..|..+...+..-.+||..-+-.=-..|-.+..-.+.. ++-+..+...+++++.-+.-|..+|.
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~-------~~~l~~v~~~v~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEEL-------ESVLQAVRSSVESLQSSYERLRSEVI 96 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555544433333333332222222 22333444444444444444444443
No 350
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=37.28 E-value=3e+02 Score=24.40 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH---HHHHHHHHHH-----HHhhcchhhh
Q 020328 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV---EISQATQEEV-----TILRGRSKLI 186 (327)
Q Consensus 115 ~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~---eis~~ik~eV-----~~v~~dls~i 186 (327)
+.|+|.=.-++..+-++.+-..|++++..=..|+.....=-+.+...+...+ .+-.++.++| ......+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577888888888888888888888887777666655544444444443211 3333333333 3333444555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
-.-+..++.+++.+..||.++|-+
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888755
No 351
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.04 E-value=2.2e+02 Score=25.74 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhcC
Q 020328 61 LLAEVSSVQQELSHV 75 (327)
Q Consensus 61 L~aQV~~LaqElr~L 75 (327)
|-..|+.+.++|..+
T Consensus 28 l~q~ird~e~~l~~a 42 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKA 42 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555677777776665
No 352
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=36.85 E-value=2.6e+02 Score=30.62 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=62.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (327)
=|+.|.+.|++|...+.++..=++.+..|+.......+++-+++.+.++----|+..=...+..+..-.+=...|+.+++
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999998889999999998888888998899988887666766666666555555554555555554
Q ss_pred h
Q 020328 227 E 227 (327)
Q Consensus 227 ~ 227 (327)
.
T Consensus 160 ~ 160 (632)
T PF14817_consen 160 Q 160 (632)
T ss_pred H
Confidence 3
No 353
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.83 E-value=2.2e+02 Score=28.10 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHh
Q 020328 215 TLGVKKLCDRARE 227 (327)
Q Consensus 215 n~GV~~LC~f~~~ 227 (327)
+..+..||.+..-
T Consensus 267 ~~~l~~l~~~~~~ 279 (359)
T COG1463 267 NQALANLRPLATL 279 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445554443
No 354
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=36.76 E-value=2.9e+02 Score=28.14 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=52.5
Q ss_pred HHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHH
Q 020328 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK---IVEISQATQEE 175 (327)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDe---q~eis~~ik~e 175 (327)
..+++|-|+ +---..+|=||.---++.||-..++.-=.+|++.....+.-+.+.+++|+.-.++ -.++.+.+++.
T Consensus 73 c~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~ 150 (406)
T PF04906_consen 73 CCAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQ 150 (406)
T ss_pred HHHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445666543 3344567888888888888887777555666666666666677777777665533 33344444555
Q ss_pred HHHhhcchhhhh
Q 020328 176 VTILRGRSKLIG 187 (327)
Q Consensus 176 V~~v~~dls~ig 187 (327)
++.+-..++.|.
T Consensus 151 ~~~v~~~l~~l~ 162 (406)
T PF04906_consen 151 AENVVQQLDELP 162 (406)
T ss_pred HHHHHHHHhcCc
Confidence 555544444443
No 355
>PRK04654 sec-independent translocase; Provisional
Probab=36.67 E-value=3e+02 Score=26.44 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId 156 (327)
+.|=.+...+++-+.++-..+..+|.++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677788888888777777777777776554
No 356
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=36.63 E-value=2.1e+02 Score=27.71 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 020328 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (327)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (327)
-...+...+...+.++..++....-+..-...+|+|.+
T Consensus 310 f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfg 347 (370)
T PF02181_consen 310 FKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFG 347 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46677788999999999999999999999999999883
No 357
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.63 E-value=2.3e+02 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 020328 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (327)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sLaaaKrHLsq 153 (327)
+.+..++..-+.++++++.+.|..+.+.|..
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888888888888888888877764
No 358
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=36.61 E-value=4.3e+02 Score=26.15 Aligned_cols=113 Identities=15% Similarity=0.256 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEeCCCCCCCCcchhhhHHHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHH
Q 020328 61 LLAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLED 139 (327)
Q Consensus 61 L~aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeq 139 (327)
++.|+..|.-|+.+. .+..-|+..+ --++.++ .|.. ..-+..+|+.
T Consensus 57 l~~~~k~L~aE~~qwqk~~peii~~n--------~~VL~~l---------------------gkee----lqkl~~eLe~ 103 (268)
T PF11802_consen 57 LMMRVKCLTAELEQWQKRTPEIIPLN--------PEVLLTL---------------------GKEE----LQKLISELEM 103 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC--------HHHHHHH---------------------HHHH----HHHHHHHHHH
Confidence 888999999999999 6655566655 1122222 2334 4455667888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020328 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 140 Vs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (327)
|=+.+.+=.++|..-+++-..=|+|+++|-+.......+++.....+.+ +.++..|+.||..++.-+
T Consensus 104 vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~k~~~ 170 (268)
T PF11802_consen 104 VLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKIKEYK 170 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999888888777765555443 355678888888776443
No 359
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=36.60 E-value=3.2e+02 Score=24.55 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 020328 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (327)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~ 166 (327)
-.|+.+.+-+..+.+.|+.+.+++..-..++.++|...|+.+|+..
T Consensus 20 ~~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~ 65 (236)
T PRK11115 20 SIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMME 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHH
Confidence 4577777778888888888888887777778888888888887765
No 360
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.54 E-value=1.6e+02 Score=27.81 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=38.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhc--chhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~--dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
|-..|.++..|+...+.....+..|+.++.. .+++++.++++++..|.+.+.||..+-+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555554 3567888888888888888888887743
No 361
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.52 E-value=57 Score=29.20 Aligned_cols=43 Identities=16% Similarity=0.424 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHH---HHHHhhhhhhhhH
Q 020328 120 FATRRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDV 162 (327)
Q Consensus 120 fVTKRnmsnAv~svtKqLeqVs~sLaaaKr---HLsqRId~vD~kL 162 (327)
|.-.++..+|.+.+-|..+....++..... .|++|++.++..+
T Consensus 86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999998877666554332 3444444444443
No 362
>PRK01156 chromosome segregation protein; Provisional
Probab=36.50 E-value=3.5e+02 Score=29.59 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhh
Q 020328 136 QLEDVYSSISAAQRQLSSKITSVDR 160 (327)
Q Consensus 136 qLeqVs~sLaaaKrHLsqRId~vD~ 160 (327)
.+++.++.+..+.+.+..+|..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~ 187 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDY 187 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555555555443
No 363
>PRK15396 murein lipoprotein; Provisional
Probab=36.49 E-value=1e+02 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=12.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020328 154 KITSVDRDVNKIVEISQATQEEVTILRG 181 (327)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~v~~ 181 (327)
.++.|..|.|+...-....+.++..+++
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555444444444444444443
No 364
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=36.39 E-value=1.6e+02 Score=26.76 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=22.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020328 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (327)
Q Consensus 148 KrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~ 194 (327)
-++|-.|=|.|...|....++.+.-.+=++.+.-=++-+.+|+..|.
T Consensus 100 E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~ 146 (159)
T PF05384_consen 100 EKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVS 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555555555544444444433333444444444444
No 365
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=36.36 E-value=5.2e+02 Score=30.49 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020328 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 169 s~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (327)
.+.++.++.+++..+.....++...+.-...++.++...+.+-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777766666666665554
No 366
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=36.31 E-value=99 Score=25.86 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHh
Q 020328 194 RDIVQTLESKLIEI 207 (327)
Q Consensus 194 ~~~V~~Le~Ki~~i 207 (327)
+.....+-.+|..|
T Consensus 54 ~~~~~~ik~~lk~l 67 (151)
T cd00179 54 KKLAKEIKGKLKEL 67 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444444
No 367
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.93 E-value=2.2e+02 Score=22.47 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q 020328 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (327)
Q Consensus 158 vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (327)
+..+|.+-.+.+.+.++|-..+...--....-|..++.-+..+|..+..+..+.+-...-+..|-+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444444555555555555555555554444444444444433
No 368
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.83 E-value=2.9e+02 Score=27.83 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=70.7
Q ss_pred hhhHH-HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH--------------------------------HHH
Q 020328 123 RRSLS-DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------------------------------EIS 169 (327)
Q Consensus 123 KRnms-nAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~--------------------------------eis 169 (327)
++++. |+...++.+|.+.+...+...-..-.||++-+.+-.+-. +.+
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHH
Confidence 45555 778889999999999999988777777766544322211 122
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhH----hHHHHHHHHH
Q 020328 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT----TLGVKKLCDR 224 (327)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T----n~GV~~LC~f 224 (327)
..=.+||+.+..-+.....-++.+..+|-.=+.=||+|.+|-+-| -.|..-|-.+
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 222356888877777777778888888888888899998875544 4566666543
No 369
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=35.69 E-value=3.1e+02 Score=24.24 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcch
Q 020328 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (327)
Q Consensus 140 Vs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl 183 (327)
+.+.|....+.+..||+.+...|++...-+..+.+-|..++.-+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~ 66 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSL 66 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56788889999999999999999998888888777776666543
No 370
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.50 E-value=3.7e+02 Score=25.04 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~v 158 (327)
.+++.++..+..-++.+.+.|+.-|..+...|++.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~ 122 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEEL 122 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45566666666666666666666666666666553
No 371
>PHA03395 p10 fibrous body protein; Provisional
Probab=35.46 E-value=1.3e+02 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 184 KLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 184 s~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
+.+..-++..-..+.++..|++.|.
T Consensus 38 ~~l~~kLdaq~~~Ltti~tkv~~I~ 62 (87)
T PHA03395 38 TEINEKLDAQSASLDTISSAVDNIT 62 (87)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555543
No 372
>PF14182 YgaB: YgaB-like protein
Probab=35.44 E-value=2.5e+02 Score=23.23 Aligned_cols=46 Identities=13% Similarity=0.333 Sum_probs=32.2
Q ss_pred HhhhhhhhhHHHHHHHHHHHHH-----HHHHhhcchhhhhhHHHHHHHHHH
Q 020328 153 SKITSVDRDVNKIVEISQATQE-----EVTILRGRSKLIGDEFQSVRDIVQ 198 (327)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~-----eV~~v~~dls~ig~Dv~~v~~~V~ 198 (327)
-++=.|-..||-|.+|-++.++ +...++..+.+...+++.||.++.
T Consensus 14 D~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 14 DKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677788888888877663 366677777777777777776654
No 373
>PHA03332 membrane glycoprotein; Provisional
Probab=35.40 E-value=2e+02 Score=33.80 Aligned_cols=15 Identities=0% Similarity=-0.179 Sum_probs=8.2
Q ss_pred ccCCCccceeccccC
Q 020328 229 ENGRPTELVQASRYT 243 (327)
Q Consensus 229 ~~~~~~~~~Q~~~s~ 243 (327)
=++..+.++|+-|-+
T Consensus 1013 l~Sl~aG~L~GCP~~ 1027 (1328)
T PHA03332 1013 LKSLLAGTLAGCPTD 1027 (1328)
T ss_pred HHHhhcccccCCCCC
Confidence 345555566665554
No 374
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=35.40 E-value=2.1e+02 Score=26.27 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=38.9
Q ss_pred CCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHHHHhhcchhhhhhHHHHH
Q 020328 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI-SQATQEEVTILRGRSKLIGDEFQSV 193 (327)
Q Consensus 115 ~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~ei-s~~ik~eV~~v~~dls~ig~Dv~~v 193 (327)
|.|.+=--|+.++++-+.+- -|+.=+.-|...=..+++.+.-+-.+..++-++ .+.+.++|.+++.-++..+.|+.-+
T Consensus 63 ~~~~~~g~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 63 VKIEIEGQKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred ccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 33444444455555544442 233333344444444555555555555555555 5555556666655555555555443
No 375
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.35 E-value=1.1e+02 Score=26.80 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHHHHHHhhcchhhhhh
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV--NKIVEISQATQEEVTILRGRSKLIGD 188 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kL--Deq~eis~~ik~eV~~v~~dls~ig~ 188 (327)
|..-+..+..++..+... -++|...+..+...+ ++..+...+.++|+..+...|..+..
T Consensus 77 ld~ei~~L~~el~~l~~~----~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKE----VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444443333 344444555555544 55556666666666666666665554
No 376
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=35.34 E-value=1.9e+02 Score=31.03 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
++++..|+++....-+.|-..|.+.++..+-....-.||.++-.-++.+..++..++.-+..+|.+=.
T Consensus 8 ~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~ 75 (701)
T PF09763_consen 8 ERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNN 75 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45556666666666667777777777777766777777777776666666666666655555554433
No 377
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.25 E-value=5.7e+02 Score=30.84 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcC
Q 020328 61 LLAEVSSVQQELSHV 75 (327)
Q Consensus 61 L~aQV~~LaqElr~L 75 (327)
+...++..++=+..+
T Consensus 235 m~~~l~~~r~t~~~~ 249 (1486)
T PRK04863 235 MEAALRENRMTLEAI 249 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555544
No 378
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=35.19 E-value=4.7e+02 Score=26.13 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=15.7
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 175 eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
++...+..++++.+-...++.++.+++.+..
T Consensus 142 ~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 142 ELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555554444
No 379
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.12 E-value=1.2e+02 Score=26.51 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik 173 (327)
-|.+|.+.==|-+.||-+.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 58 eMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 58 EMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4677777777778888888888888888888888777777777766654
No 380
>PRK11519 tyrosine kinase; Provisional
Probab=35.04 E-value=6.2e+02 Score=27.46 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLS 152 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLs 152 (327)
..++.+=+.+||+++...|..+.+.|.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~ 291 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLN 291 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777666655554
No 381
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=35.02 E-value=2.2e+02 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=18.3
Q ss_pred hcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 180 ~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
.++|.++-.-++.+...+.-||.||++|-
T Consensus 20 E~kL~~~e~~Lq~~E~~l~iLEaKL~SIp 48 (148)
T PF10152_consen 20 EEKLSDMEQRLQRLEATLNILEAKLSSIP 48 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445555556666666677777777775
No 382
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=35.02 E-value=3.9e+02 Score=29.10 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=56.5
Q ss_pred hheeeEEecccCCCchhhhhhh--hHHHH-------------------HHHHHhhhHHHHHHHH---HHHHHHHHhhhhh
Q 020328 103 VGYGYVWWKGWKLPDMMFATRR--SLSDA-------------------CNSVARQLEDVYSSIS---AAQRQLSSKITSV 158 (327)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTKR--nmsnA-------------------v~svtKqLeqVs~sLa---aaKrHLsqRId~v 158 (327)
-||.=|-=+|..|.++ =+-+| +|.+. .+.+-..++++|+-+. +||+....+...+
T Consensus 236 ~Gyr~m~~~gY~l~~~-~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l 314 (570)
T COG4477 236 AGYRDMKEEGYHLEHV-NIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPIL 314 (570)
T ss_pred HHHHHHHHccCCcccc-cHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3788888999999983 22111 22222 2223345566676664 6999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcc
Q 020328 159 DRDVNKIVEISQATQEEVTILRGR 182 (327)
Q Consensus 159 D~kLDeq~eis~~ik~eV~~v~~d 182 (327)
-+.|+.+++....+++|...|+..
T Consensus 315 ~~~l~k~ke~n~~L~~Eie~V~~s 338 (570)
T COG4477 315 PDYLEKAKENNEHLKEEIERVKES 338 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877653
No 383
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=34.95 E-value=2.5e+02 Score=28.23 Aligned_cols=47 Identities=32% Similarity=0.404 Sum_probs=31.4
Q ss_pred hhhhhhHHH----HHHHHHhhhHHHHH----HHHHHHHHHHHhhhhhhhhHHHHH
Q 020328 120 FATRRSLSD----ACNSVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIV 166 (327)
Q Consensus 120 fVTKRnmsn----Av~svtKqLeqVs~----sLaaaKrHLsqRId~vD~kLDeq~ 166 (327)
||-|.+.+= |+..+++=|++|-+ .|...|+.|..||+-|.--+|=++
T Consensus 15 fAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIe 69 (302)
T PF05508_consen 15 FAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIE 69 (302)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 566666653 55666666666544 577888888888888776665443
No 384
>KOG4670 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=34.82 E-value=53 Score=35.32 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH--HHhhhhhhhHhHHHHHHHH
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL--IEIEGKQDITTLGVKKLCD 223 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki--~~ie~kQd~Tn~GV~~LC~ 223 (327)
.=.-|.|.|+.|+..++++.+..+.=--++...+.++..|..|..... ...|+-=+ =....+|++.-+-|+.||+
T Consensus 375 iL~plvqeI~~vn~qfr~q~a~p~lqig~~sV~~lk~aAi~~~~~~~~--~p~lp~llpfLd~~snqeYlvqRIKeLaq 451 (602)
T KOG4670|consen 375 ILDPLVQEIRTVNQQFRQQQAQPQLQIGLISVMQLKVAAISEHRRLQG--LPKLPWLLPFLDRSSNQEYLVQRIKELAQ 451 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccceechhhHHHHHHHHHHHhhhhcc--CCccchhhhhccCCccHHHHHHHHHHHhh
Confidence 445688899999999997776665555556666666666665532221 11111111 1346779999999999998
No 385
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=34.76 E-value=3.2e+02 Score=30.18 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=48.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~ 191 (327)
+..+--..++|+.+|..+=.++.+||=++...++.+..=+...++++..++++++....|-.
T Consensus 40 ~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 40 VMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 33333456788888888888999999999999988888888888888888888777665543
No 386
>PRK12482 flagellar motor protein MotA; Provisional
Probab=34.69 E-value=2.1e+02 Score=28.23 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=66.6
Q ss_pred hhhhHHHhhhheeeEEecc-----cCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh---hhhHHHH
Q 020328 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKI 165 (327)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~v---D~kLDeq 165 (327)
.++++++|++.+||+.=.| |.++-+|-|-=-.+ ++.-++.-++++-..+...|+-+..+-.+. .+-++..
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~--ga~lis~p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~l 82 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGI--GAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLL 82 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Confidence 4556677788778776444 55666666655444 344567888999999999999887766555 4778889
Q ss_pred HHHHHHHHHH-HHHhhcchhhhhh
Q 020328 166 VEISQATQEE-VTILRGRSKLIGD 188 (327)
Q Consensus 166 ~eis~~ik~e-V~~v~~dls~ig~ 188 (327)
.|+++.-|.| +-.+..+++++.+
T Consensus 83 v~ls~~aRr~GllaLE~~i~~~~d 106 (287)
T PRK12482 83 YELLEMVQEGGLKRLDQHIEIPEE 106 (287)
T ss_pred HHHHHHHHhcCHHHHHHhhcCccc
Confidence 9999988876 6666666666653
No 387
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=34.67 E-value=2.5e+02 Score=26.56 Aligned_cols=32 Identities=6% Similarity=0.212 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 020328 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sLaaaKrHLsq 153 (327)
.++.+.+....+-|++.+.+..|..+|+..-+
T Consensus 113 e~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~ 144 (258)
T cd07655 113 ETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHA 144 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777888888888777776543
No 388
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.59 E-value=1.1e+02 Score=29.26 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020328 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (327)
Q Consensus 139 qVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d 182 (327)
.+=.-|.+.|..+.+|...|...+.++.+.....+.||..++.|
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999999999998888888888777775
No 389
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=34.55 E-value=1.8e+02 Score=27.49 Aligned_cols=20 Identities=10% Similarity=0.401 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSIS 145 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLa 145 (327)
+.+=+..+--++++..+.+.
T Consensus 84 lE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 84 LEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 390
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=34.32 E-value=3.6e+02 Score=31.84 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=9.9
Q ss_pred CCchhhhhhhhHHHHHHHH
Q 020328 115 LPDMMFATRRSLSDACNSV 133 (327)
Q Consensus 115 ~SDlMfVTKRnmsnAv~sv 133 (327)
.+|+-+..-.+.+-||..+
T Consensus 894 ~p~f~~~~v~~~s~a~~~l 912 (1395)
T KOG3595|consen 894 NPDFVPEKVNRASLACEGL 912 (1395)
T ss_pred CccCCHHHHHhhhhhhhhH
Confidence 4555555555555555544
No 391
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=34.32 E-value=5.8e+02 Score=31.58 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020328 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (327)
Q Consensus 125 nmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (327)
++..-+.+|-.+....-.+-+++|+.+.+||+.|.+.|.+.+.= .++++..+|.=......++..-+..|..+...+
T Consensus 777 ~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~ 853 (1822)
T KOG4674|consen 777 SLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESEL 853 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33444555556666677888999999999999998877665433 333444444433344444444444444444433
Q ss_pred H
Q 020328 205 I 205 (327)
Q Consensus 205 ~ 205 (327)
+
T Consensus 854 ~ 854 (1822)
T KOG4674|consen 854 K 854 (1822)
T ss_pred H
Confidence 3
No 392
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.29 E-value=3.4e+02 Score=29.95 Aligned_cols=79 Identities=13% Similarity=0.286 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020328 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (327)
Q Consensus 123 KRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (327)
||||.. .+-+++=+..+..-.+=+++..|+++|+..+++++-....++.+.+....+...+-...+.++.--..||.
T Consensus 51 RRnLr~---~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~ 127 (655)
T KOG3758|consen 51 RRNLRS---DIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLEL 127 (655)
T ss_pred Hhhhhh---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 777765 44456666777777788889999999999999999999999999888888777776666777655555555
Q ss_pred HH
Q 020328 203 KL 204 (327)
Q Consensus 203 Ki 204 (327)
|.
T Consensus 128 r~ 129 (655)
T KOG3758|consen 128 RK 129 (655)
T ss_pred HH
Confidence 43
No 393
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=34.18 E-value=1.1e+02 Score=23.36 Aligned_cols=30 Identities=10% Similarity=0.306 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 020328 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (327)
Q Consensus 136 qLeqVs~sLaaaKrHLsqRId~vD~kLDeq 165 (327)
=|+|+++-....-..+..|||.+..++|+.
T Consensus 11 lL~qmq~kFq~mS~~I~~riDeM~~RIDdL 40 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDEMSSRIDDL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345555555555555666666666666654
No 394
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=33.89 E-value=1.7e+02 Score=32.21 Aligned_cols=53 Identities=6% Similarity=0.169 Sum_probs=45.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (327)
..++.+..+-.+++.|+.+-.++.+=.++-+.||+.|..|+..++.--..+.-
T Consensus 72 ~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~ 124 (683)
T KOG1961|consen 72 KESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQL 124 (683)
T ss_pred HhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 35568888999999999999999999999999999999999999866544433
No 395
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=33.80 E-value=45 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.9
Q ss_pred eeeEEecccCCCchhhhhhhhHHH
Q 020328 105 YGYVWWKGWKLPDMMFATRRSLSD 128 (327)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnmsn 128 (327)
.-|+.|+|++-++--+++..++.+
T Consensus 19 ~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 19 EYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred EEEEEECCCCCccCceeeHHHHHH
Confidence 347899999999999999988886
No 396
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.69 E-value=4.8e+02 Score=25.79 Aligned_cols=68 Identities=22% Similarity=0.181 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhcc
Q 020328 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (327)
Q Consensus 163 Deq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (327)
++|++--+.+++|=+++...++....+++.+|.-...||....+++.+-+.-..-|+.|-.-...++.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 33333333333444444444444444555555555555555555555544444445555443434443
No 397
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=33.64 E-value=2.7e+02 Score=26.00 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis 169 (327)
..|.+-+.+|...-+.++ ||.||+=+|+..|..
T Consensus 111 ~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~ 143 (191)
T PTZ00446 111 NALSYAANTHKKLNNEIN--TQKVEKIIDTIQENK 143 (191)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Confidence 344444444444444443 666666666655443
No 398
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=33.62 E-value=1.5e+02 Score=24.26 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHHHHh
Q 020328 121 ATRRSLSDACNSVAR 135 (327)
Q Consensus 121 VTKRnmsnAv~svtK 135 (327)
+.+.|+.+.++..-+
T Consensus 29 a~~~~v~~~~~~f~~ 43 (113)
T PF02520_consen 29 AEKYGVQDQYNEFKA 43 (113)
T ss_pred HHHCCcHHHHHHHHH
Confidence 444444444433333
No 399
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=33.54 E-value=1.7e+02 Score=20.52 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=12.1
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHH
Q 020328 153 SKITSVDRDVNKIVEISQATQEEVTI 178 (327)
Q Consensus 153 qRId~vD~kLDeq~eis~~ik~eV~~ 178 (327)
+.|+++...+-++.++...|..+|.+
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~ 37 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEE 37 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 400
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.53 E-value=3e+02 Score=27.07 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.4
Q ss_pred hhhheeeEE
Q 020328 101 VAVGYGYVW 109 (327)
Q Consensus 101 GavGYgYmw 109 (327)
.|+|+.|.|
T Consensus 194 ~Aa~~Lc~W 202 (344)
T PF12777_consen 194 KAAGSLCKW 202 (344)
T ss_dssp TTHHHHHHH
T ss_pred hcchHHHHH
Confidence 344555544
No 401
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=33.44 E-value=1.1e+02 Score=31.04 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=19.7
Q ss_pred HhhhHHHHHHHHH--HHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 020328 134 ARQLEDVYSSISA--AQRQLSSKITSVDRDVNKIVEISQATQ 173 (327)
Q Consensus 134 tKqLeqVs~sLaa--aKrHLsqRId~vD~kLDeq~eis~~ik 173 (327)
+.||.++++++.+ .-..|.+-++.++.-++....++.+++
T Consensus 306 s~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~ 347 (370)
T PLN03094 306 SEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDIS 347 (370)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555 444555555555544444444444333
No 402
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=33.38 E-value=2.1e+02 Score=31.30 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=24.2
Q ss_pred CcccccccCCCCCC---CCCCCCCCCC-CCCCCCCCCCCCC
Q 020328 243 TLSRTTLELPGITP---SSRSGSLHPL-PLEPPSPSXXXXX 279 (327)
Q Consensus 243 ~s~~~ale~~~~~p---~sr~~slpp~-~~e~~sps~~~~~ 279 (327)
+.++|+=|.||+.- ...+..+||. |..-|.|.+.+||
T Consensus 787 a~pi~aNesP~iPhepfatkadaeP~s~ptsE~a~~eea~S 827 (838)
T KOG0630|consen 787 AHPIPANESPPIPHEPFATKADAEPPSEPTSEPAPGEEAGS 827 (838)
T ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcC
Confidence 47889999888631 2556677777 6555666665554
No 403
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.37 E-value=4.4e+02 Score=29.40 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHH---HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrH---LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (327)
|.+.+-+..+.+.+.....++...|++ +.++.+.+--++++....-++|+..+.+.+..++.+.+-...++.=...|
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777765 23444455555555555555555554444444433333333333333333
Q ss_pred HHHHHHh
Q 020328 201 ESKLIEI 207 (327)
Q Consensus 201 e~Ki~~i 207 (327)
-.|+.++
T Consensus 614 ~~kle~~ 620 (698)
T KOG0978|consen 614 KRKLERL 620 (698)
T ss_pred HHHHHHh
Confidence 3444433
No 404
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=33.33 E-value=4.2e+02 Score=24.94 Aligned_cols=97 Identities=14% Similarity=0.258 Sum_probs=45.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhh----hhhhhhHHHHHH----HHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020328 133 VARQLEDVYSSISAAQRQLSSKI----TSVDRDVNKIVE----ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (327)
Q Consensus 133 vtKqLeqVs~sLaaaKrHLsqRI----d~vD~kLDeq~e----is~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (327)
+.+++|.+-+.+..+=.-|..|= +.+++-+.+..+ .+..+.+=|..+...++. ...+..+..-|..+|...
T Consensus 85 L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~-~~~~~~i~~eI~~~E~e~ 163 (217)
T COG1392 85 LIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLES-ADRLLEIIKEIEALEHEC 163 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHh
Confidence 34455555555555555444443 244443333322 222233223333333222 222334444456666666
Q ss_pred HHhhhh-------hhhH--hHHHHHHHHHHHhhcc
Q 020328 205 IEIEGK-------QDIT--TLGVKKLCDRARELEN 230 (327)
Q Consensus 205 ~~ie~k-------Qd~T--n~GV~~LC~f~~~~~~ 230 (327)
|.|+.+ -+.. -..++++|++++.+++
T Consensus 164 D~i~~~l~k~Lf~~e~~~~~~~~~~~~~i~~~i~~ 198 (217)
T COG1392 164 DDIQRELLKKLFSLETEINPIDVIILKEIIEKIED 198 (217)
T ss_pred hHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 666543 1222 3677888888876553
No 405
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=33.31 E-value=13 Score=28.45 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.9
Q ss_pred ceeeeEcCcccceeeccC
Q 020328 7 KLTFLVGAGILTSVLAKE 24 (327)
Q Consensus 7 Kv~ILvGAG~~GSVl~kn 24 (327)
|++++.|+|++.|.++++
T Consensus 1 kIlvvC~~Gi~TS~~~~~ 18 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVAN 18 (90)
T ss_dssp EEEEEESSSSHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHH
Confidence 799999999999988854
No 406
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.18 E-value=4.1e+02 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=24.6
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 178 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
|++.-|+.-+.+|++++++|+++-..|..=
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 566678889999999999999988777643
No 407
>PHA00276 phage lambda Rz-like lysis protein
Probab=33.13 E-value=2e+02 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020328 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (327)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~ 191 (327)
.+.++.+++...++|+..++.....+..|+.
T Consensus 50 ~QqaVaal~~~yqkEladaK~~~DrLiadlR 80 (144)
T PHA00276 50 TQAAINAVSKEYQEDLAALEGSTDRVIADLR 80 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3666777888888888777776555555543
No 408
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.89 E-value=2.4e+02 Score=25.40 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020328 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (327)
Q Consensus 143 sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~ 194 (327)
.+.+...+|..||..++..+.+.....+.++||...++--+.....-+..++
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777777777776666655544444444443
No 409
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.71 E-value=1.7e+02 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 020328 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (327)
Q Consensus 122 TKRnmsnAv~svtKqLeqVs~sLaaaKrHLsq 153 (327)
-|+++=++++.+.+|+.++++.+++-|.++..
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888887777776654
No 410
>PRK15396 murein lipoprotein; Provisional
Probab=32.58 E-value=1.6e+02 Score=23.92 Aligned_cols=10 Identities=0% Similarity=-0.087 Sum_probs=4.3
Q ss_pred hhHhHHHHHH
Q 020328 212 DITTLGVKKL 221 (327)
Q Consensus 212 d~Tn~GV~~L 221 (327)
.++|.-++..
T Consensus 63 ~raN~RlDn~ 72 (78)
T PRK15396 63 ARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 411
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.48 E-value=4.3e+02 Score=30.52 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH--------HHHhhc---chhhhhhHHHHHHH
Q 020328 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--------VTILRG---RSKLIGDEFQSVRD 195 (327)
Q Consensus 127 snAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~e--------V~~v~~---dls~ig~Dv~~v~~ 195 (327)
....+.+..++++..+.+...+.++..+++.++..+..++.-.+.+.++ +.++.. .+..+..+++.++.
T Consensus 287 ~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~ 366 (1201)
T PF12128_consen 287 KEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQE 366 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555554443333322 222222 22344555556666
Q ss_pred HHHHHHHHHHHhhhh
Q 020328 196 IVQTLESKLIEIEGK 210 (327)
Q Consensus 196 ~V~~Le~Ki~~ie~k 210 (327)
....|.+|...|+.+
T Consensus 367 ~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESK 381 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666554
No 412
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.44 E-value=2.8e+02 Score=30.60 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchh---hhhhHHHHHHHHHHHHHHHHHH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
.+.+..-..+..+=+.|.-++.+|+..+++++......++++..++..+. .++.++.....-+..|+-+|.+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 413
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=32.34 E-value=2.3e+02 Score=35.32 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHH-----------------HHHHHHHHHHHHHHHhhcchhhhhhH---HHHHHHHHHHH
Q 020328 141 YSSISAAQRQLSSKITSVDRDVN-----------------KIVEISQATQEEVTILRGRSKLIGDE---FQSVRDIVQTL 200 (327)
Q Consensus 141 s~sLaaaKrHLsqRId~vD~kLD-----------------eq~eis~~ik~eV~~v~~dls~ig~D---v~~v~~~V~~L 200 (327)
|+.|.+...||.+|-+++....+ +|.|....|++. +.+-+++..++.| |..++....+|
T Consensus 918 sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK-~~~~e~t~~~~~Dl~gv~alqrrL~~l 996 (2473)
T KOG0517|consen 918 SDEILARQDKLNQRWQQLRELVDQKKVALESALRVETFHLECEETRVWIRDK-TRVLESTDRLGNDLAGVMALQRRLQGL 996 (2473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHhccccCcchHHHHHHHHHHhhh
Confidence 46688899999999887765544 455666666554 4455666777777 44556667777
Q ss_pred HHHHHHhhhhhhh
Q 020328 201 ESKLIEIEGKQDI 213 (327)
Q Consensus 201 e~Ki~~ie~kQd~ 213 (327)
|.++.-||.|++.
T Consensus 997 Erdl~aie~kv~~ 1009 (2473)
T KOG0517|consen 997 ERDLAAIEAKVAA 1009 (2473)
T ss_pred hhHHHHHHHHHHH
Confidence 7777777766543
No 414
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=32.13 E-value=97 Score=26.27 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=45.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020328 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (327)
Q Consensus 148 KrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (327)
|+.|-.+|+.+..++.+..+=.+.+|++|.++-+.=.++.-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999998888899999888888777777788888876666655
No 415
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=32.04 E-value=2.1e+02 Score=21.11 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020328 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (327)
Q Consensus 161 kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (327)
.|..|.|..+.+.+.+ ..+...+...+.++..++
T Consensus 30 ~L~~Qre~L~~~~~kl-------~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 30 DLRSQREQLKRVRDKL-------DDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHH
Confidence 3444444444444444 334444455555544443
No 416
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.00 E-value=2.8e+02 Score=29.99 Aligned_cols=181 Identities=12% Similarity=0.143 Sum_probs=98.9
Q ss_pred hHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHH--HhcC-CCceEEEeCCCCCCCCcchhhh-HHHhhhheeeEEecc
Q 020328 37 TLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQE--LSHV-PRSVIIETSSGSGTGAKKYGVI-VVIVAVGYGYVWWKG 112 (327)
Q Consensus 37 alk~l~K~lk~~d~s~s~s~~~~dL~aQV~~LaqE--lr~L-sr~iTVvn~~ssg~gg~~y~l~-a~iGavGYgYmwWKG 112 (327)
.|++-++-+++-++.++ .+..|..+-++|.+= |.+. .+-+..+++. +...+.+..+ -+...+.+ .
T Consensus 189 ~L~fq~~Ele~~~l~~g---E~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge--~~~~~~~~~l~~a~~~l~~------~ 257 (557)
T COG0497 189 LLQFQLEELEELNLQPG---EDEELEEERKRLSNSEKLAEAIQNALELLSGE--DDTVSALSLLGRALEALED------L 257 (557)
T ss_pred HHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHHHH------h
Confidence 34444554555444443 122277766666542 2222 4455566654 2222334443 23344432 0
Q ss_pred cCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020328 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (327)
Q Consensus 113 ws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsq---RId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~D 189 (327)
-.+.. .=+.+.+.++..--+|+.++..|...-.+|.- |++.+..+|.....+.+--.-.+.++-.-..++..+
T Consensus 258 ~~~d~----~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~e 333 (557)
T COG0497 258 SEYDG----KLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEE 333 (557)
T ss_pred hccCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11111 11344444455555666666666666666654 899999999888888877665566666666666666
Q ss_pred HHHHHHH---HHHHHHHHHHhhhhhhhHhHHHHHHH-HHHHhhccCC
Q 020328 190 FQSVRDI---VQTLESKLIEIEGKQDITTLGVKKLC-DRARELENGR 232 (327)
Q Consensus 190 v~~v~~~---V~~Le~Ki~~ie~kQd~Tn~GV~~LC-~f~~~~~~~~ 232 (327)
++.+... ...||.++..+..+=..+..-+-..= +++..++..-
T Consensus 334 l~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 334 LAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554 66788888888776555555444432 3444444433
No 417
>PRK11677 hypothetical protein; Provisional
Probab=31.94 E-value=1.7e+02 Score=25.97 Aligned_cols=39 Identities=5% Similarity=0.109 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV 176 (327)
.++...|..+|.+|.+-=+.|.+..++..++...+.++=
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y 70 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDY 70 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666777777777766665554
No 418
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.92 E-value=4.1e+02 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=22.0
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020328 174 EEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (327)
Q Consensus 174 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (327)
+||+..-..++++..-|..|+++|+.||.
T Consensus 192 EEi~ksm~pv~~La~qir~irRlve~les 220 (222)
T KOG4514|consen 192 EEITKSMKPVEQLAQQIRQIRRLVEMLES 220 (222)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 55666666677888888888888888875
No 419
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=31.85 E-value=1e+02 Score=30.90 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=44.9
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhc------chh-hhhhHHHHH
Q 020328 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG------RSK-LIGDEFQSV 193 (327)
Q Consensus 121 VTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~------dls-~ig~Dv~~v 193 (327)
+.+--+.|-|..-++-+..++..+.-=...|..||+.+=..++++....+.+.+.|..+++ ||. .++.|++.|
T Consensus 204 ~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL 283 (307)
T PF15112_consen 204 IPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKL 283 (307)
T ss_pred CchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 3444444555555555555566665556667777777767777777666666666666654 333 566666444
Q ss_pred HH
Q 020328 194 RD 195 (327)
Q Consensus 194 ~~ 195 (327)
+.
T Consensus 284 ~~ 285 (307)
T PF15112_consen 284 DS 285 (307)
T ss_pred HH
Confidence 43
No 420
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=31.85 E-value=4.8e+02 Score=25.17 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH----------HHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020328 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE----------ISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (327)
Q Consensus 127 snAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~e----------is~~ik~eV~~v~~dls~ig~Dv~~v~~~ 196 (327)
++-+|.+-+.|+........+....+.||+.+..||-.|.+ ..+..+.++..+-...++-.+-...-+++
T Consensus 20 td~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~ 99 (239)
T PF05276_consen 20 TDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEM 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788899999999999999999999999999988765 34677788888888888888889999999
Q ss_pred HHHHHHHHHHhh
Q 020328 197 VQTLESKLIEIE 208 (327)
Q Consensus 197 V~~Le~Ki~~ie 208 (327)
|.-+|..+..=.
T Consensus 100 v~laEq~l~~~~ 111 (239)
T PF05276_consen 100 VALAEQSLMSDS 111 (239)
T ss_pred HHHHHHHHhcCC
Confidence 999998887644
No 421
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=31.72 E-value=15 Score=33.24 Aligned_cols=14 Identities=36% Similarity=0.330 Sum_probs=9.4
Q ss_pred eeeEcCcccceeec
Q 020328 9 TFLVGAGILTSVLA 22 (327)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (327)
+++||||++|..++
T Consensus 4 V~IvGaG~aGl~~A 17 (356)
T PF01494_consen 4 VAIVGAGPAGLAAA 17 (356)
T ss_dssp EEEE--SHHHHHHH
T ss_pred EEEECCCHHHHHHH
Confidence 57999999987655
No 422
>PLN02320 seryl-tRNA synthetase
Probab=31.69 E-value=1.6e+02 Score=31.33 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHH
Q 020328 197 VQTLESKLIEIEGKQDITTLGVKK 220 (327)
Q Consensus 197 V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (327)
+..|-.+|..+|........-+..
T Consensus 139 ~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 139 GKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333333
No 423
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=31.61 E-value=26 Score=29.09 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=39.5
Q ss_pred ceeeeEcCcccceeeccCCCCcchhhhhhhhHHHHHHhhhcCCCCCCCcchhHH--HHHHHHHHHHHHhcC--CCceEEE
Q 020328 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND--LLAEVSSVQQELSHV--PRSVIIE 82 (327)
Q Consensus 7 Kv~ILvGAG~~GSVl~knGkLsdv~~~lsgalk~l~K~lk~~d~s~s~s~~~~d--L~aQV~~LaqElr~L--sr~iTVv 82 (327)
||+++.|+|+..|++++. +....... | +..-+.+...+..+. ...+.+- +.-||+..-.++++. ..||.++
T Consensus 5 kIllvC~~G~sTSll~~k--m~~~~~~~-g-i~~~V~A~~~~~~~~-~~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I 79 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSK--MRAQAEKY-E-VPVIIEAFPETLAGE-KGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVI 79 (106)
T ss_pred EEEEECCCCccHHHHHHH--HHHHHHHC-C-CCEEEEEeecchhhc-cccCCCEEEECHHHHHHHHHHHhhcCCCCEEEE
Confidence 799999999999999843 21111000 0 000000000000001 1122322 455999999999987 4688888
Q ss_pred eCC
Q 020328 83 TSS 85 (327)
Q Consensus 83 n~~ 85 (327)
+.-
T Consensus 80 ~~~ 82 (106)
T PRK10499 80 DSL 82 (106)
T ss_pred ChH
Confidence 754
No 424
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=31.50 E-value=4.2e+02 Score=29.24 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=22.4
Q ss_pred hhhhhhhhHHHHHHH----HHhhhHHHHHHHHHHHHHHH
Q 020328 118 MMFATRRSLSDACNS----VARQLEDVYSSISAAQRQLS 152 (327)
Q Consensus 118 lMfVTKRnmsnAv~s----vtKqLeqVs~sLaaaKrHLs 152 (327)
.||+|.+.|...+.. +.+.++++..-+..+..|+.
T Consensus 159 ~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi~ 197 (806)
T PF05478_consen 159 CAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQID 197 (806)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 489999888777664 45555555555555555543
No 425
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.46 E-value=5.9e+02 Score=29.70 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=19.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v 193 (327)
+..+|..+-.+++...+..+.+..++.++...+..+......+
T Consensus 222 ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~ 264 (1311)
T TIGR00606 222 IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI 264 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333333
No 426
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=31.33 E-value=15 Score=33.53 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.3
Q ss_pred eeeEcCcccceeecc
Q 020328 9 TFLVGAGILTSVLAK 23 (327)
Q Consensus 9 ~ILvGAG~~GSVl~k 23 (327)
+|+||+|.+|++++.
T Consensus 3 ~iIVGsG~~G~v~A~ 17 (296)
T PF00732_consen 3 YIIVGSGAGGSVVAS 17 (296)
T ss_dssp EEEES-SHHHHHHHH
T ss_pred EEEECcCHHHHHHHH
Confidence 689999999999775
No 427
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=31.25 E-value=3.1e+02 Score=22.78 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhc
Q 020328 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 229 (327)
Q Consensus 177 ~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~ 229 (327)
..+...++.+...-+.++..+..-..+|...-....+... ...++.|+...+
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~-~~~l~~wl~~~e 126 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD-ADDLEQWLEEKE 126 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444444444444444444444444443332222222 222666665444
No 428
>PF10310 DUF2413: Protein of unknown function (DUF2413); InterPro: IPR018814 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=31.24 E-value=1.5e+02 Score=30.94 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 020328 61 LLAEVSSVQQE 71 (327)
Q Consensus 61 L~aQV~~LaqE 71 (327)
|++-++.|++.
T Consensus 34 iL~fLdeL~~~ 44 (444)
T PF10310_consen 34 ILAFLDELEQS 44 (444)
T ss_pred HHHHHHHHhhc
Confidence 66666666664
No 429
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=31.19 E-value=5.5e+02 Score=25.73 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchh---hhhhHHHHHHHHHHHHHHHHHHh
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
+-|-.--.++.+-|+.+..+|.-+-.+-++..+......+++.+++.+.. .-|.++.++...++-||-+.-..
T Consensus 51 rE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~ 126 (294)
T COG1340 51 RELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTS 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhc
Confidence 33444445677777888888888888888888888888888888887777 55777777777777776665533
No 430
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=31.15 E-value=1.2e+02 Score=28.28 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhh-HHHHHHHHHHHHHHHHHHhhh
Q 020328 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD-EFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 137 LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~-Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
+|...+.|--|+-|+.. +++.++-..||++...+..|++.-++ -..--...|.-||..|++.+.
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~~ 102 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYNA 102 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHHh
Confidence 57777777777777654 77888889999999999999887761 011223445666666665543
No 431
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.11 E-value=5.7e+02 Score=25.83 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcC
Q 020328 61 LLAEVSSVQQELSHV 75 (327)
Q Consensus 61 L~aQV~~LaqElr~L 75 (327)
|..|+..+++++...
T Consensus 166 l~~ql~~~~~~L~~a 180 (498)
T TIGR03007 166 IDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888877777765
No 432
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.84 E-value=4.6e+02 Score=24.72 Aligned_cols=108 Identities=11% Similarity=0.214 Sum_probs=70.3
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH--HHHHHHHHhhcchhhhhhHHHH----
Q 020328 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ--ATQEEVTILRGRSKLIGDEFQS---- 192 (327)
Q Consensus 119 MfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~--~ik~eV~~v~~dls~ig~Dv~~---- 192 (327)
++-.++.+.+.+..+-|.+-.-+..+..+|+.+-+|-...+....+... .+ .+.+++..++.+++.-.+++..
T Consensus 98 ~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~-~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~ 176 (233)
T cd07649 98 FKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEI-KLSNKTEEDIKKARRKSTQAGDDLMRCVDL 176 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999888876554322 11 1234455555554444333322
Q ss_pred HHHHHHHHHHHHHHhhhh-hhhHhHHHHHHHHHHHh
Q 020328 193 VRDIVQTLESKLIEIEGK-QDITTLGVKKLCDRARE 227 (327)
Q Consensus 193 v~~~V~~Le~Ki~~ie~k-Qd~Tn~GV~~LC~f~~~ 227 (327)
...+-..++.++..+-.. |.+-..-|..|.+++.+
T Consensus 177 y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~ 212 (233)
T cd07649 177 YNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQ 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334555565555333 66666667766666543
No 433
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=30.71 E-value=1.7e+02 Score=25.37 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKr---HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~ 192 (327)
..+.+-++.+.++-.+.+..|..+|+ +|+.|+=+|-.+++-..--.-.+..|-.+++..++.+..++..
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
No 434
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.66 E-value=1.8e+02 Score=23.74 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHhhccC
Q 020328 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (327)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (327)
++..+|.....|=.+++.+..--+---..=.+|++|++.+...
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555443333334456899999888553
No 435
>PHA02414 hypothetical protein
Probab=30.58 E-value=1.7e+02 Score=25.37 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (327)
|-.||+++.+|+.+-.=+- ++|-......+..++.||-.|+..+.-=++||-.--.-|..|-+-+.
T Consensus 9 Lv~~v~~ledKiQ~Gelt~----------kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 9 LVSQVETLEDKIQEGELTD----------KGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred HHHHHHHHHHHHhcCcccc----------CCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 5566777777766532111 23444445556666666666666666666666554444444443333
No 436
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.56 E-value=1.6e+02 Score=23.49 Aligned_cols=58 Identities=12% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhh
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~ 188 (327)
..++.+....+---|..||..+ .-+..++..+++|.+-.+..++++..-+.=|..++.
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i-~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAI-RELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555443 346668888888888888888777666655554443
No 437
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=30.52 E-value=2.8e+02 Score=22.05 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 020328 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (327)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~k 210 (327)
++|++..+.++..+..||+.+|.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEar 72 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEAR 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999998875
No 438
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.46 E-value=1.5e+02 Score=27.64 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020328 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (327)
Q Consensus 171 ~ik~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (327)
.+++++++++.+++.+...++.+.+.|.
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556677777777777777777777654
No 439
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.22 E-value=5.1e+02 Score=27.73 Aligned_cols=75 Identities=13% Similarity=0.275 Sum_probs=41.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020328 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (327)
+.-.+-++.+..++.....++.-+++++...+.+..|+.+..+++-..-+++++.+. +.....+...|.||..++
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~---e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE---EREKEALGSKDEKITDLQ 441 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666667777777777777776666665555555444432 223333444444444443
No 440
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=30.04 E-value=4.8e+02 Score=28.07 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHH---hhhhhhhhHHH------HHHHHH----------------HHHHHHHHhhcchhhhhhHHHHH
Q 020328 139 DVYSSISAAQRQLSS---KITSVDRDVNK------IVEISQ----------------ATQEEVTILRGRSKLIGDEFQSV 193 (327)
Q Consensus 139 qVs~sLaaaKrHLsq---RId~vD~kLDe------q~eis~----------------~ik~eV~~v~~dls~ig~Dv~~v 193 (327)
+.-|.+.-|++||.- |||....++|. -.|++. .-+.|+.+++-....-..|++.+
T Consensus 249 n~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~ 328 (554)
T KOG4677|consen 249 NELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHI 328 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHH
Confidence 355777888888864 44443333333 122222 23578888888888899999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 020328 194 RDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 194 ~~~V~~Le~Ki~~ie~kQ 211 (327)
+.-+..|+..|..||+.|
T Consensus 329 q~q~~~Lrs~~~d~EAq~ 346 (554)
T KOG4677|consen 329 QDQYTLLRSQIIDIEAQD 346 (554)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998875
No 441
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=30.03 E-value=2.9e+02 Score=22.08 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
+-+.+++.+.+.-..|.+..+-++.+-++..+=...+...+++.+.++..+..=...|..++ +++.+..-+.++
T Consensus 2 ~s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~-r~~~~D~~li~~ 75 (92)
T PF03908_consen 2 ASSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE-RRDKTDRILIFF 75 (92)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH
Confidence 34678888999999999999999999999999999999999999888877766555555553 455555544443
No 442
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.91 E-value=6.5e+02 Score=26.10 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=45.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHHHHhh-------cchhhhhhHHHHHHHHHHHHHHHH
Q 020328 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVN-KIVEISQATQEEVTILR-------GRSKLIGDEFQSVRDIVQTLESKL 204 (327)
Q Consensus 133 vtKqLeqVs~sLaaaKrHLsqRId~vD~kLD-eq~eis~~ik~eV~~v~-------~dls~ig~Dv~~v~~~V~~Le~Ki 204 (327)
+.+-++.+ ..+....-.|...||+|..++- +...+.+..++|=.... +-++--..||.++++-...+|.||
T Consensus 214 l~~~~~el-~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 214 LQKILEEL-REIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333443 3445555566677777766333 44555555555422221 122233445556665555666665
Q ss_pred HHhhhhhhhHhHHHHHHHH-HHHhhc
Q 020328 205 IEIEGKQDITTLGVKKLCD-RARELE 229 (327)
Q Consensus 205 ~~ie~kQd~Tn~GV~~LC~-f~~~~~ 229 (327)
+=-.+-.-....-+.--|+ -+..+|
T Consensus 293 ~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 293 AYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5333332233333444443 344555
No 443
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=29.83 E-value=3.8e+02 Score=23.47 Aligned_cols=84 Identities=13% Similarity=0.302 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcc--hhhhhhHHHHH----HHHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR--SKLIGDEFQSV----RDIV 197 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~d--ls~ig~Dv~~v----~~~V 197 (327)
.++.+=.+++..+++++-..=.+-+....++-+..+..|+++.+.-..+.+....+..+ +.-++++.+.+ ....
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 55666677788888888777788888999999999999999999999998776666543 44445554443 4455
Q ss_pred HHHHHHHHHh
Q 020328 198 QTLESKLIEI 207 (327)
Q Consensus 198 ~~Le~Ki~~i 207 (327)
..||.+|..-
T Consensus 103 ~~L~k~I~~~ 112 (126)
T PF09403_consen 103 NKLDKEIAEQ 112 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 444
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.76 E-value=2.2e+02 Score=30.50 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020328 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (327)
Q Consensus 149 rHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (327)
+.|.+|+.-=|...+.-.+..+.|.++|++++..=...---|...++.-..|+.+|=+|--||
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777763222222234444444444555554444443
No 445
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=29.54 E-value=7.3e+02 Score=27.59 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=39.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH--HHHHHhhhhhhhHhHHHHHHHHHHH
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--SKLIEIEGKQDITTLGVKKLCDRAR 226 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le--~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (327)
|..-++++...+.+|-- .+.+-+++++.-......=.+.=+.+|.-+. .++..+-.+-..|+.-...||.|++
T Consensus 34 l~~h~~~~~~e~~~~ln---~~~n~~~~i~~~~~e~~~l~e~~r~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~ 108 (742)
T COG5173 34 LEHHDGNLSAEISKCLN---NILNISKRIYGLEEELKSLVEGKRRNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVE 108 (742)
T ss_pred HHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333 3333343333333333333333444554444 3566677788889999999999887
No 446
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.41 E-value=3.2e+02 Score=22.35 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 020328 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (327)
Q Consensus 170 ~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (327)
....++|..+..|-+++-.+++....-...||.-=.+|...=+.+...|..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666667777777777666666666666666666666655543
No 447
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.41 E-value=98 Score=31.12 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=14.8
Q ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 020328 120 FATRRSLSDACNSVARQLEDVYSSISAAQR 149 (327)
Q Consensus 120 fVTKRnmsnAv~svtKqLeqVs~sLaaaKr 149 (327)
|+..=|..++.+.+.+++++....++..+.
T Consensus 234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~ 263 (406)
T PF02388_consen 234 FLAELNGKEYLESLQEKLEKLEKEIEKLEE 263 (406)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444444333
No 448
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=29.38 E-value=1.7e+02 Score=22.57 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=29.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020328 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (327)
Q Consensus 155 Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (327)
+..++.+|-.....-+.+.+.-......+.++..-++-+++.+-.|..|||
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444444444444455556666667777777777777765
No 449
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.35 E-value=1.6e+02 Score=21.91 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=14.2
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v 179 (327)
++.+.|+.+..++++..+-.+..+.++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555554444444444444444
No 450
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.35 E-value=4.6e+02 Score=24.23 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=24.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHH---HHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik---~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (327)
+|..||+.|=.-.|++..+.+..+ .++.+..-......+.+..+...+..|...
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 566676666555554444443333 233333223333334444444444444443
No 451
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.23 E-value=39 Score=27.47 Aligned_cols=44 Identities=7% Similarity=0.300 Sum_probs=28.6
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 020328 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (327)
Q Consensus 118 lMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDe 164 (327)
|=|.||+.-+.. ++..=++-=+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~~---Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQG---LSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 457887775543 33333334445556667899999999887774
No 452
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.15 E-value=1.8e+02 Score=25.62 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 163 Deq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
.|..|..+..++.|+.+++=.=.||.|++.=+++..++++-.++....=--|-.-+.-+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ 90 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTM 90 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999999999988777655554444433
No 453
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.08 E-value=4.1e+02 Score=31.16 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=43.0
Q ss_pred CCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020328 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (327)
Q Consensus 115 ~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~ 194 (327)
+-++++ ||+ -+.+|..++.-+-.-|+-.+..+++-=..++....|. +.+.++..+..-.++.|..++++..
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El----~~~~~~i~~~~p~i~~i~r~l~~~e 738 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELEL----QRTESEIDEFGPEISEIKRKLQNRE 738 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhCchHHHHHHHHHHHH
Confidence 345566 444 5666777777666666666666655333333332222 2333334444444444444444444
Q ss_pred HHHHHHHHHHHHhhh
Q 020328 195 DIVQTLESKLIEIEG 209 (327)
Q Consensus 195 ~~V~~Le~Ki~~ie~ 209 (327)
..+..|+.++..+|.
T Consensus 739 ~~~~~L~~~~n~ved 753 (1141)
T KOG0018|consen 739 GEMKELEERMNKVED 753 (1141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 454
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.00 E-value=1.2e+02 Score=26.12 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=37.9
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020328 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (327)
Q Consensus 148 KrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (327)
|+.|-.++..+..++.+..+-...+|++|.++-+.=....-+-+.++..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778888888888888777777777777777766566666666666555544
No 455
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.97 E-value=3.9e+02 Score=26.95 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=15.2
Q ss_pred CCchhhhhhhhHHHHHHHHHhhhHHH
Q 020328 115 LPDMMFATRRSLSDACNSVARQLEDV 140 (327)
Q Consensus 115 ~SDlMfVTKRnmsnAv~svtKqLeqV 140 (327)
+.+++.+...=..++++.+.+-|...
T Consensus 195 ~~ey~~~~~~~~~ks~e~~~~~l~~~ 220 (320)
T TIGR01834 195 MADYQLLEADIGYKSFAALMSDLLAR 220 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666666665555543
No 456
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.92 E-value=2.6e+02 Score=28.43 Aligned_cols=6 Identities=33% Similarity=0.545 Sum_probs=2.8
Q ss_pred CCceEE
Q 020328 76 PRSVII 81 (327)
Q Consensus 76 sr~iTV 81 (327)
...|.+
T Consensus 285 ~~~i~v 290 (451)
T PF03961_consen 285 GGSIIV 290 (451)
T ss_pred CCeEEE
Confidence 345555
No 457
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.89 E-value=1.8e+02 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=23.9
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHH-HHHHHHHHHHh
Q 020328 172 TQEEVTILRGRSKLIGDEFQSVRDI-VQTLESKLIEI 207 (327)
Q Consensus 172 ik~eV~~v~~dls~ig~Dv~~v~~~-V~~Le~Ki~~i 207 (327)
-..++++++.| .+-..+++..|.+ |..|-.|+.+.
T Consensus 251 KdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~ 286 (305)
T KOG3990|consen 251 KDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEES 286 (305)
T ss_pred hhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777 5555778888877 77777766543
No 458
>PRK09303 adaptive-response sensory kinase; Validated
Probab=28.88 E-value=1.3e+02 Score=29.22 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhcchhhh
Q 020328 168 ISQATQEEVTILRGRSKLI 186 (327)
Q Consensus 168 is~~ik~eV~~v~~dls~i 186 (327)
++-.+++-++.++.-++.+
T Consensus 158 iaHeLrtPLt~i~~~~e~l 176 (380)
T PRK09303 158 LAHDLRTPLTAASLALETL 176 (380)
T ss_pred HhHhhcchHHHHHHHHHHH
Confidence 4445555555554444433
No 459
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=28.70 E-value=1.3e+02 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=29.5
Q ss_pred ecccCCCchhhhhhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q 020328 110 WKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (327)
Q Consensus 110 WKGws~SDlMfVTKRn---msnAv~svtKqLeqVs~sLaaaKrHLsqRId 156 (327)
||--|+++|--+|--+ +.+..-=-.++|+..-..|..-|..|..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~ 56 (151)
T PRK10778 7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVD 56 (151)
T ss_pred cccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877766 2222222235777776666666666655554
No 460
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=28.43 E-value=4.5e+02 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=11.4
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q 020328 133 VARQLEDVYSSISAAQRQLS 152 (327)
Q Consensus 133 vtKqLeqVs~sLaaaKrHLs 152 (327)
+.+.+|.|-+.+.++=+++.
T Consensus 86 L~~~lD~I~D~i~~~a~~l~ 105 (216)
T TIGR00153 86 LAELLDEILDSLEHAAMLYE 105 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34555666666665555555
No 461
>PRK11020 hypothetical protein; Provisional
Probab=28.07 E-value=2.5e+02 Score=24.74 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020328 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (327)
Q Consensus 152 sqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (327)
.+-|++|.++||.|.- +..-...++|-+- +..+..=+..|+.+|.++-.+|++-
T Consensus 4 K~Eiq~L~drLD~~~~-----Klaaa~~rgd~~~----i~qf~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 4 KNEIKRLSDRLDAIRH-----KLAAASLRGDAEK----YAQFEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666532 1112223333222 3344444566778888888777653
No 462
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=28.03 E-value=5.1e+02 Score=24.33 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH
Q 020328 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (327)
Q Consensus 136 qLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv 190 (327)
.++....-+.+.++.+.+-++.-+...++-.+.++.+..++.++...-......+
T Consensus 154 ~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 154 DLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667778888888888888888888888888888888877766554444444
No 463
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=28.02 E-value=2.3e+02 Score=20.40 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVN 163 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLD 163 (327)
+++...+.....+|...++.+...++
T Consensus 10 ~~~a~~~~~~~~~l~~~~~~l~~~~~ 35 (86)
T PF06013_consen 10 RAAAQQLQAQADELQSQLQQLESSID 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433333333
No 464
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.97 E-value=4.7e+02 Score=23.91 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=25.1
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 020328 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (327)
Q Consensus 118 lMfVTKRnmsnAv~svtKqLeqVs~sLaaaKr 149 (327)
-++-.-..+.+-++.+-+.++.+.+.|..+|.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777778888888888888888888887753
No 465
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.92 E-value=2.1e+02 Score=29.22 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=43.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh---hhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 020328 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (327)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~v~~dls~---ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (327)
+|-.+|.+.-+...-....+.+.+++...+.. -+.|.+.+..-+..|..+|..+|.+......-+..++.-+
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555444444455555555555554433 1235667777777788888888888887777777765533
No 466
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=27.92 E-value=4.4e+02 Score=23.51 Aligned_cols=145 Identities=12% Similarity=0.172 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCCCceE-EEeCCCCCCCCcchhhhHHHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhhHH
Q 020328 61 LLAEVSSVQQELSHVPRSVI-IETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLED 139 (327)
Q Consensus 61 L~aQV~~LaqElr~Lsr~iT-Vvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqLeq 139 (327)
....|..|...|+.|.+..+ |++.. .-++.+++=+|=.+-.|-..= ..+.+++++..++.-.+.
T Consensus 29 ~~~~~~~le~~Lk~l~~~~~~l~~~~--------~~l~~~~~e~~~~~~~la~~E-------~~~~l~~~l~~l~~~~~~ 93 (236)
T PF09325_consen 29 IKDYVDKLEEQLKKLYKSLERLVKRR--------QELASALAEFGSSFSQLAKSE-------EEKSLSEALSQLAEAFEK 93 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhccc-------CCchhHHHHHHHHHHHHH
Confidence 67778888888888733222 22211 122223333333333333332 227789999999888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH---HHHhhcchhhhhhHHHHHHHH--------------HHHHHH
Q 020328 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDI--------------VQTLES 202 (327)
Q Consensus 140 Vs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~e---V~~v~~dls~ig~Dv~~v~~~--------------V~~Le~ 202 (327)
+.+.+.. +-.+-...+...|++..-....+++- =..+...+.+...++++.+.- +..++.
T Consensus 94 ~~~~~~~---~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ 170 (236)
T PF09325_consen 94 ISELLEE---QANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAEN 170 (236)
T ss_pred HHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 8877543 33334445666677776666666533 233444445555555555433 334444
Q ss_pred HHHHhhhhhhhHhHHHHHHHH
Q 020328 203 KLIEIEGKQDITTLGVKKLCD 223 (327)
Q Consensus 203 Ki~~ie~kQd~Tn~GV~~LC~ 223 (327)
.|...+.+.+.+..-....++
T Consensus 171 ei~~~~~~~~~~~~~~~~is~ 191 (236)
T PF09325_consen 171 EIEEAERRVEQAKDEFEEISE 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445444444444444443
No 467
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.90 E-value=5e+02 Score=28.13 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020328 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (327)
Q Consensus 160 ~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (327)
.++++.......++.|..-++.+...+.+|+.-|+.=...|..-|.++
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 333433344444444444444444444444444444444444444444
No 468
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=27.84 E-value=4.9e+02 Score=24.07 Aligned_cols=56 Identities=13% Similarity=0.274 Sum_probs=28.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 151 LsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
|.+||......|.+..+-.....+++..+..-.+++...+...+.....++.++..
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555554444444444444443
No 469
>PF13514 AAA_27: AAA domain
Probab=27.52 E-value=3.1e+02 Score=31.14 Aligned_cols=92 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 142 ~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
+.+......+..+|+.+..++++..+-...++.++..+.++ +++..+..-...++.+|.+....=-....+...|
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~-----~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL 966 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGD-----DDAAELEQEREEAEAELEELAEEWAALRLAAELL 966 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhccCCCcccee
Q 020328 222 CDRARELENGRPTELVQ 238 (327)
Q Consensus 222 C~f~~~~~~~~~~~~~Q 238 (327)
-+..+.......+.+++
T Consensus 967 ~~a~~~~r~~~~p~vl~ 983 (1111)
T PF13514_consen 967 EEAIERYREERQPPVLA 983 (1111)
T ss_pred HHHHHHHHHHhhHHHHH
No 470
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=27.46 E-value=4.6e+02 Score=28.42 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=3.8
Q ss_pred HHHHHHhhh
Q 020328 38 LKIVSKLIK 46 (327)
Q Consensus 38 lk~l~K~lk 46 (327)
|-+|+..|-
T Consensus 101 l~fLiekLP 109 (594)
T PF05667_consen 101 LMFLIEKLP 109 (594)
T ss_pred HHHHHHHCC
Confidence 344444443
No 471
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.38 E-value=2.8e+02 Score=27.25 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhH----hHHHHHHHHHH
Q 020328 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT----TLGVKKLCDRA 225 (327)
Q Consensus 165 q~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T----n~GV~~LC~f~ 225 (327)
+.++.+.=.+.+..+..|+-....-++.+-.||..=+..+|+||++-+.| -.|=..|-.++
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~ 235 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAA 235 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444456788887775444 34445555443
No 472
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=27.37 E-value=5.4e+02 Score=28.43 Aligned_cols=74 Identities=12% Similarity=0.260 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-----------HhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020328 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT-----------ILRGRSKLIGDEFQSVRDIVQTLESKL 204 (327)
Q Consensus 136 qLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~-----------~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (327)
+.-.+..-|.+.+..+..+++-+++|++.+....+.|+++.+ .-...+.-|=.|++.=++.+..||..+
T Consensus 179 ~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~ 258 (629)
T KOG0963|consen 179 EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREV 258 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555554444 444446677777888888888888777
Q ss_pred HHhhh
Q 020328 205 IEIEG 209 (327)
Q Consensus 205 ~~ie~ 209 (327)
..+..
T Consensus 259 e~L~~ 263 (629)
T KOG0963|consen 259 EQLRE 263 (629)
T ss_pred HHHHH
Confidence 76644
No 473
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=27.31 E-value=97 Score=25.23 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q 020328 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (327)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (327)
+|++.+| .++++||.|-+++|.-++-.
T Consensus 15 ~dfne~~-------kRLdeieekvef~~~Ev~Qr 41 (75)
T COG4064 15 DDFNEIH-------KRLDEIEEKVEFVNGEVYQR 41 (75)
T ss_pred HHHHHHH-------HHHHHHHHHHHhhHHHHHHH
Confidence 4666666 67788888888888766544
No 474
>PF08010 Phage_30_3: Bacteriophage protein GP30.3; InterPro: IPR012596 Proteins in this family are bacteriophage Y12G proteins. Gene Y12G encodes a 17.1kDa protein in Gp30-rIII intergenic region, which in T4 is a 75 amino acid basic peptide which has a C terminus rich in charged amino acids [][].
Probab=27.27 E-value=60 Score=29.39 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=37.1
Q ss_pred eEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 020328 107 YVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQ 150 (327)
Q Consensus 107 YmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrH 150 (327)
=+||||--|.=.-=.=++=+.+|...+. |=+....+|.+||.+
T Consensus 72 tlYw~G~p~~R~S~~y~~Li~~Ay~~~~-QN~~F~~aL~aT~~~ 114 (146)
T PF08010_consen 72 TLYWKGEPIHRHSEAYQNLIDRAYRAMF-QNEGFRRALLATKNS 114 (146)
T ss_pred ceeECCCccccCCHHHHHHHHHHHHHHH-hCHHHHHHHHHcCCC
Confidence 3699999998776677777899999999 999999999999864
No 475
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=27.12 E-value=1.6e+02 Score=22.50 Aligned_cols=37 Identities=11% Similarity=0.336 Sum_probs=26.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~ 166 (327)
...+-.+.+.+|+.|-.-=.+++.|||.|...+.+..
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~ 48 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLM 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555677888888888999999999998887653
No 476
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.09 E-value=3e+02 Score=27.83 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh
Q 020328 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (327)
Q Consensus 137 LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~i 186 (327)
|++=+..|.++-|...++++.+..-+++|..-...=+....++...+.+.
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555555666666666655555444443344444444444444
No 477
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=27.00 E-value=3.9e+02 Score=24.71 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeCCCCCCC-Ccchhhh-HHHhhhheeeEEecccCCCchhhhhhhhHHHHHHHHHhhh
Q 020328 60 DLLAEVSSVQQELSHVPRSVIIETSSGSGTG-AKKYGVI-VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQL 137 (327)
Q Consensus 60 dL~aQV~~LaqElr~Lsr~iTVvn~~ssg~g-g~~y~l~-a~iGavGYgYmwWKGws~SDlMfVTKRnmsnAv~svtKqL 137 (327)
+...+|..|.+.|+.|.+.+..+... ... +..++-+ .++..+|=|= -..+|++|+..++..-
T Consensus 16 ~~k~~i~~Le~~Lk~l~~~~e~lv~~--r~ela~~~~~f~~s~~~L~~~E--------------~~~~Ls~al~~la~~~ 79 (224)
T cd07623 16 EKQQQIENLDQQLRKLHASVESLVNH--RKELALNTGSFAKSAAMLSNCE--------------EHTSLSRALSQLAEVE 79 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc--------------cchhHHHHHHHHHHHH
Confidence 37778888888888885444333322 111 1112221 2333444322 1346788887777776
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH---HHHhhcchhhhhhHHHHHHHHHHHH
Q 020328 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDIVQTL 200 (327)
Q Consensus 138 eqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~e---V~~v~~dls~ig~Dv~~v~~~V~~L 200 (327)
+.++..... +-.+=...+.+-|++-..+...+++= =..+-....+...++...+.....|
T Consensus 80 ~ki~~~~~~---qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl 142 (224)
T cd07623 80 EKIEQLHGE---QADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKL 142 (224)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666544 33344456677777777777777743 3344555566677777777664444
No 478
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=26.98 E-value=66 Score=26.36 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHhHH
Q 020328 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (327)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G 217 (327)
.|++.++ .||++||+|-++||.=
T Consensus 15 ~d~~~i~-------~rLD~iEeKVEftn~E 37 (77)
T PRK01026 15 KDFKEIQ-------KRLDEIEEKVEFTNAE 37 (77)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3566666 6777777777777753
No 479
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.83 E-value=7.5e+02 Score=29.04 Aligned_cols=91 Identities=12% Similarity=0.209 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHhhhhhhhhHHHHHHHHHHHH---HHHHHhhcchhhhhhHH
Q 020328 124 RSLSDACNSVARQLEDVYSSISAAQRQ----------LSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEF 190 (327)
Q Consensus 124 RnmsnAv~svtKqLeqVs~sLaaaKrH----------LsqRId~vD~kLDeq~eis~~ik---~eV~~v~~dls~ig~Dv 190 (327)
++|.+-|+.+..-|+-+-....+.... |..|-..+...+++..-+--... +|+.+++-..+.=+.|+
T Consensus 899 ~~lr~sleq~nstl~ll~~~~~~~Ey~~~~~ps~~~pl~~RA~~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeel 978 (1243)
T KOG0971|consen 899 ECLRQSLEQLNSTLNLLATAMQEGEYDAERPPSKPPPLELRAAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEEL 978 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCcHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHH
Confidence 455555555544444444333333333 45555554444444333222221 23334444444444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhH
Q 020328 191 QSVRDIVQTLESKLIEIEGKQDIT 214 (327)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQd~T 214 (327)
-+.+--....|.||++...+++..
T Consensus 979 Se~qvRldmaEkkLss~~k~~~h~ 1002 (1243)
T KOG0971|consen 979 SEAQVRLDLAEKKLSSAAKDADHR 1002 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhhHhHH
Confidence 444444444444444444433333
No 480
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.62 E-value=1.5e+02 Score=33.73 Aligned_cols=81 Identities=10% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (327)
.+++-=..++......+..||....+.++.+..+...+.++-..+...+++....++.....+..|-.|+.+++..-|-.
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcch
Q ss_pred h
Q 020328 215 T 215 (327)
Q Consensus 215 n 215 (327)
+
T Consensus 889 ~ 889 (970)
T KOG0946|consen 889 T 889 (970)
T ss_pred H
No 481
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.62 E-value=1.4e+02 Score=28.85 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~-eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
.+|-.+...+...|+.|...-+-+...+.... .+.+.+++...++..++.+..+.++..++++..|=+-..+
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s 252 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLS 252 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556655554444444444433 5666667777777777777777777777776665444333
No 482
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=26.61 E-value=22 Score=33.33 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.5
Q ss_pred eeeEcCcccceeec
Q 020328 9 TFLVGAGILTSVLA 22 (327)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (327)
+++||||++|+.++
T Consensus 2 ViIvGaG~aGl~~A 15 (385)
T TIGR01988 2 IVIVGGGMVGLALA 15 (385)
T ss_pred EEEECCCHHHHHHH
Confidence 57899999998654
No 483
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.55 E-value=4.9e+02 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020328 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (327)
Q Consensus 147 aKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls 184 (327)
-|.|..+||+.|-.++....-=.....+|...++..++
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~ 451 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666655554333333444444444333
No 484
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=26.54 E-value=1.6e+02 Score=22.48 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHH--HHHHhhhhhhhhHH
Q 020328 137 LEDVYSSISAAQR--QLSSKITSVDRDVN 163 (327)
Q Consensus 137 LeqVs~sLaaaKr--HLsqRId~vD~kLD 163 (327)
+.+........+. ++.+||+.+..+||
T Consensus 61 ~~~~~~~~~~~~~~~~l~~~i~~L~~~le 89 (89)
T PF05164_consen 61 LLKLKRELDELEELERLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 3333344444444 77777777777765
No 485
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.48 E-value=5.4e+02 Score=26.00 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=39.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhh--------------hhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020328 131 NSVARQLEDVYSSISAAQRQLSSKIT--------------SVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLsqRId--------------~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~ 196 (327)
..|..||..=+.++...-+.+..... +|..-|-+..|--+..+.||..++..+....+|++.++..
T Consensus 29 KlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~ 108 (319)
T PF09789_consen 29 KLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREK 108 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 34445555555555555444443222 2223445666666777778888888888888887777764
Q ss_pred H
Q 020328 197 V 197 (327)
Q Consensus 197 V 197 (327)
.
T Consensus 109 l 109 (319)
T PF09789_consen 109 L 109 (319)
T ss_pred H
Confidence 3
No 486
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=26.37 E-value=2.8e+02 Score=27.31 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=15.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 020328 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (327)
Q Consensus 133 vtKqLeqVs~sLaaaKrHLsqRId~vD~kLD 163 (327)
.-|-|||=-+.|.+..++|-+-++.+..|+.
T Consensus 128 ~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~ 158 (254)
T KOG2196|consen 128 DQKRLDQELEFILSQQQELEDLLDPLETKLE 158 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555554444444443
No 487
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=26.32 E-value=5.8e+02 Score=26.01 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=56.5
Q ss_pred hhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh--------hhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020328 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK--------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (327)
Q Consensus 120 fVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqR--------Id~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~ 191 (327)
|-.|+++ ....+.|++.+.-.++-.|+|-.| ++++|-=||+...-.-..-|++.+++.++.+-+.++.
T Consensus 210 ~~lr~~~----~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~~L~ 285 (377)
T PF14728_consen 210 FELRQEL----KELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQANLKRAGASLS 285 (377)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4445544 445566666677777777777755 5788888888877777777889999999999998888
Q ss_pred HHHHHHHHH
Q 020328 192 SVRDIVQTL 200 (327)
Q Consensus 192 ~v~~~V~~L 200 (327)
..-+++..|
T Consensus 286 ~~~~Ll~~L 294 (377)
T PF14728_consen 286 CATQLLILL 294 (377)
T ss_pred HHHHHHHHH
Confidence 877766443
No 488
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=26.28 E-value=4.1e+02 Score=28.78 Aligned_cols=46 Identities=15% Similarity=0.368 Sum_probs=41.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~ 195 (327)
+...||..+..++.-.+.-.+.+.+|+..++...++|..+++.++.
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3467889999999999999999999999999999999999998884
No 489
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=26.15 E-value=3.3e+02 Score=21.53 Aligned_cols=78 Identities=13% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhh--hhH-HHHHHHHHHHHHHHHHhhcchhhhhhHHH-----------HHHH
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD--RDV-NKIVEISQATQEEVTILRGRSKLIGDEFQ-----------SVRD 195 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD--~kL-Deq~eis~~ik~eV~~v~~dls~ig~Dv~-----------~v~~ 195 (327)
|..|...|.++...+..-++-..+-+...| ..+ ++..++...|..-..+++.+|.++..+.. .-+.
T Consensus 10 v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~ 89 (117)
T smart00503 10 VEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKA 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHH
Q ss_pred HHHHHHHHHHHh
Q 020328 196 IVQTLESKLIEI 207 (327)
Q Consensus 196 ~V~~Le~Ki~~i 207 (327)
.+..|-.++..+
T Consensus 90 q~~~L~~~f~~~ 101 (117)
T smart00503 90 QTEKLRKKFKEV 101 (117)
T ss_pred HHHHHHHHHHHH
No 490
>PHA03386 P10 fibrous body protein; Provisional
Probab=26.13 E-value=2e+02 Score=24.43 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 020328 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (327)
Q Consensus 126 msnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~ 177 (327)
..+|++.+...++-++..+...+.. .+.+|.+-.+|++...-...|++-++
T Consensus 10 Ir~dIkavd~KVdaLQ~qV~dv~~n-~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 10 ILDAVQEVDTKVDALQTQLNGLEED-SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHHHHHHhcC
No 491
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.06 E-value=3.7e+02 Score=22.02 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 130 v~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
....-..+++-...|......|...+.+.|.=|.++.+=...-......-...-.....++..++.-+..|...+..++.
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 020328 210 K 210 (327)
Q Consensus 210 k 210 (327)
+
T Consensus 103 ~ 103 (126)
T PF13863_consen 103 K 103 (126)
T ss_pred H
No 492
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.98 E-value=3.4e+02 Score=22.70 Aligned_cols=60 Identities=8% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHH----------HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020328 150 QLSSKITSVDRDVNKIVEISQA----------TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~----------ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (327)
++..++..++=.|++.+++... .++-+..+...+..+...++.++.+...|+.++...++
T Consensus 46 ~~I~~lr~~G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~ 115 (118)
T cd04776 46 KLILRGKRLGFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRE 115 (118)
T ss_pred HHHHHHHHCCCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.98 E-value=3e+02 Score=30.52 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh-------------------hhHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020328 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLI-------------------GDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (327)
Q Consensus 154 RId~vD~kLDeq~eis~~ik~eV~~v~~dls~i-------------------g~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (327)
.+|.+.++.|..+++.+.+-..|-+.-+.+++| -.||+.+. .-+++|.|+..+|.-----
T Consensus 386 ~~d~t~d~id~i~~l~k~~na~V~~~N~ri~nf~k~~~~sk~~le~~~v~~~~~~VQe~~-~Y~g~ekk~n~LE~e~kn~ 464 (758)
T COG4694 386 KLDSTKDEIDAIKDLIKKANAQVVNHNERIKNFEKQKKSSKEQLEKFLVNEFKSDVQEYN-KYCGLEKKINNLEKEIKNN 464 (758)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhh
Q ss_pred hHHHHHHHHHHHhhc
Q 020328 215 TLGVKKLCDRARELE 229 (327)
Q Consensus 215 n~GV~~LC~f~~~~~ 229 (327)
..-|..|-+.+..++
T Consensus 465 ~~ev~kls~ei~~ie 479 (758)
T COG4694 465 QEEVKKLSNEIKEIE 479 (758)
T ss_pred HHHHHHHHHHHHHHH
No 494
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=25.90 E-value=2.8e+02 Score=26.60 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred chhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020328 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (327)
Q Consensus 117 DlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~ 196 (327)
|-|-..||+|+++-..+++.+..++.+-..+=.+.-.++..|-.|+.+. -..+-.+|...+.+.|...-.|++.++.+
T Consensus 47 e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~eki~~l--~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdl 124 (218)
T cd07662 47 DRMTRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFDKTRKI--EARVAADEDLKLSDLLKYYLRESQAAKDL 124 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH--HHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 020328 197 V 197 (327)
Q Consensus 197 V 197 (327)
.
T Consensus 125 l 125 (218)
T cd07662 125 L 125 (218)
T ss_pred H
No 495
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=25.67 E-value=1.8e+02 Score=24.59 Aligned_cols=63 Identities=8% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHH-------HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020328 150 QLSSKITSVDRDVNKIVEISQATQEE-------VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (327)
Q Consensus 150 HLsqRId~vD~kLDeq~eis~~ik~e-------V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (327)
++..++..++=.|+|.+++.....+. ..-++..+..+...+..++.+...|+.++.......+
T Consensus 48 ~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~ 117 (133)
T cd04787 48 RFILSARQLGFSLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQWQQMPD 117 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 496
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.59 E-value=6.7e+02 Score=24.86 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhHhH
Q 020328 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (327)
Q Consensus 137 LeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (327)
|.+.=+.+..++++.. .-+....+-+.+....+..+.|.....+++.+...++..+++-+...-+||.+++.+--.-..
T Consensus 171 LR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 171 LRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhccCCCcc
Q 020328 217 GVKKLCDRARELENGRPTE 235 (327)
Q Consensus 217 GV~~LC~f~~~~~~~~~~~ 235 (327)
-|.++=-=++++++.+.-+
T Consensus 250 ~~~~~~sKV~kf~~~sl~~ 268 (269)
T PF05278_consen 250 TIKSIKSKVEKFHGKSLLD 268 (269)
T ss_pred HHHHHHHHHHHhcCCcccc
No 497
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=25.56 E-value=2.7e+02 Score=20.39 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH----HHHhhh
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSV-DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK----LIEIEG 209 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~v-D~kLDeq~eis~~ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K----i~~ie~ 209 (327)
+++.++...+.....-|.+.-..+ ....-...+-.+...++...+..++......++.|+.....|... -..|..
T Consensus 1 ~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~ 80 (105)
T PF00435_consen 1 KQLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Q ss_pred hhhhHhHHHHHHHHHHHhhcc
Q 020328 210 KQDITTLGVKKLCDRARELEN 230 (327)
Q Consensus 210 kQd~Tn~GV~~LC~f~~~~~~ 230 (327)
+.+.-+.--..||+.+.....
T Consensus 81 ~~~~l~~~w~~l~~~~~~r~~ 101 (105)
T PF00435_consen 81 KLEELNQRWEALCELVEERRQ 101 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 498
>PRK01156 chromosome segregation protein; Provisional
Probab=25.33 E-value=4.8e+02 Score=28.61 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-----------HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020328 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-----------TQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (327)
Q Consensus 135 KqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~-----------ik~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (327)
.++.+-+..+..-.+.+..+|..+...+++...-... +..++.+++.++..+..++..+..-...|+..
T Consensus 359 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~ 438 (895)
T PRK01156 359 EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN 438 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhh
Q 020328 204 LIEIEGKQD 212 (327)
Q Consensus 204 i~~ie~kQd 212 (327)
+..+...-+
T Consensus 439 ~~el~~~~~ 447 (895)
T PRK01156 439 LDELSRNME 447 (895)
T ss_pred HHHHHHHHH
No 499
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=25.25 E-value=3.9e+02 Score=24.08 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHHHhhhhee-eEEecccCCCchhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 020328 97 IVVIVAVGYG-YVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (327)
Q Consensus 97 ~a~iGavGYg-YmwWKGws~SDlMfVTKRnmsnAv~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~e 175 (327)
++++|.+||| |.=+|=-+=||+ ||.|-.|=.+.-..-.+..|.+++.+.+
T Consensus 15 ~a~~~flgYciYFD~KRR~dPdF-----------------------------RkkLr~rr~k~~~~~~~~~~~~~~~~~~ 65 (148)
T TIGR00985 15 IAAAAFLGYAIYFDYKRRNDPDF-----------------------------RKKLRRRRKKQAGAEKQYGGLAKEKQRQ 65 (148)
T ss_pred HHHHHHHHHHHhhhhhhccCHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH---hhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh-hHhHHHHHHHHHH
Q 020328 176 VTI---LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD-ITTLGVKKLCDRA 225 (327)
Q Consensus 176 V~~---v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd-~Tn~GV~~LC~f~ 225 (327)
+.. ...+-.-+-.|.+.++..... |=++.+--..|. -..+|+.+++..+
T Consensus 66 ~~~~~~~~~~~~p~p~d~~e~E~~Fl~-eV~~GE~L~~~g~~~~ega~hf~nAl 118 (148)
T TIGR00985 66 RIRPAAAGLAKAPDPTDPSEKEAFFLQ-EVQLGEELMAQGTNVDEGAVHFYNAL 118 (148)
T ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHH-HHHHHHHHHhCCCchHHHHHHHHHHH
No 500
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=25.18 E-value=4.6e+02 Score=22.87 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcch-hhhhhHHHHHHHHHHHHHHHHHH
Q 020328 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS-KLIGDEFQSVRDIVQTLESKLIE 206 (327)
Q Consensus 131 ~svtKqLeqVs~sLaaaKrHLsqRId~vD~kLDeq~eis~~ik~eV~~v~~dl-s~ig~Dv~~v~~~V~~Le~Ki~~ 206 (327)
+...+.|.+....+...-+.|..........++........++.....++... .....+++-+=-++..++.|+..
T Consensus 26 ~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~k 102 (136)
T PF04871_consen 26 SQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKK 102 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHH
Done!