Query 020329
Match_columns 327
No_of_seqs 268 out of 1238
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05469 Transthyretin_like Tra 100.0 5.5E-47 1.2E-51 315.5 11.9 109 206-327 1-113 (113)
2 TIGR02962 hdxy_isourate hydrox 100.0 8.3E-47 1.8E-51 314.6 12.4 108 206-327 1-112 (112)
3 TIGR03164 UHCUDC OHCU decarbox 100.0 7.9E-46 1.7E-50 325.4 18.2 146 8-154 1-157 (157)
4 cd05822 TLP_HIUase HIUase (5-h 100.0 1.5E-46 3.3E-51 313.0 12.2 108 206-327 1-112 (112)
5 COG3195 Uncharacterized protei 100.0 1E-45 2.2E-50 322.3 15.9 153 7-160 13-176 (176)
6 COG2351 Transthyretin-like pro 100.0 3.8E-46 8.1E-51 309.1 12.4 108 206-327 9-124 (124)
7 PRK13798 putative OHCU decarbo 100.0 5.5E-45 1.2E-49 322.7 18.7 149 7-157 13-165 (166)
8 PF00576 Transthyretin: HIUase 100.0 1.5E-46 3.4E-51 313.0 8.1 108 206-326 1-112 (112)
9 TIGR03180 UraD_2 OHCU decarbox 100.0 7.5E-45 1.6E-49 319.6 18.1 147 7-155 3-158 (158)
10 cd05821 TLP_Transthyretin Tran 100.0 4.1E-44 8.8E-49 301.3 12.5 111 201-324 2-116 (121)
11 PF09349 OHCU_decarbox: OHCU d 100.0 1.8E-43 3.8E-48 310.9 13.3 146 7-153 3-159 (159)
12 smart00095 TR_THY Transthyreti 100.0 1.4E-43 2.9E-48 298.2 12.0 108 204-324 2-113 (121)
13 PRK15036 hydroxyisourate hydro 100.0 3.1E-42 6.7E-47 296.4 12.8 107 206-327 27-137 (137)
14 KOG3006 Transthyretin and rela 100.0 3.8E-41 8.3E-46 279.2 10.1 110 204-327 19-132 (132)
15 PRK13590 putative bifunctional 100.0 8.2E-40 1.8E-44 338.3 18.4 155 7-162 10-180 (591)
16 PRK13799 unknown domain/N-carb 100.0 9.8E-40 2.1E-44 337.8 18.5 154 7-161 10-179 (591)
17 PRK13797 putative bifunctional 100.0 1.3E-38 2.8E-43 322.2 18.7 149 7-157 348-515 (516)
18 PF13620 CarboxypepD_reg: Carb 96.8 0.00085 1.8E-08 51.3 2.4 59 208-287 2-60 (82)
19 PF11974 MG1: Alpha-2-macroglo 96.7 0.0029 6.3E-08 51.5 4.9 44 205-263 12-56 (97)
20 PF13715 DUF4480: Domain of un 92.8 0.16 3.4E-06 39.4 4.0 55 208-287 2-56 (88)
21 PF10794 DUF2606: Protein of u 92.5 0.34 7.3E-06 41.3 5.8 67 205-284 41-107 (131)
22 PF01060 DUF290: Transthyretin 90.3 0.48 1E-05 37.0 4.3 36 217-263 7-42 (80)
23 cd03463 3,4-PCD_alpha Protocat 90.1 0.52 1.1E-05 42.9 5.0 57 207-264 38-97 (185)
24 PF10670 DUF4198: Domain of un 88.7 0.86 1.9E-05 40.6 5.3 62 204-282 149-210 (215)
25 cd03868 M14_CPD_I The first ca 88.2 1.1 2.4E-05 44.6 6.2 57 205-287 295-351 (372)
26 PRK03094 hypothetical protein; 88.0 0.51 1.1E-05 37.5 3.0 24 106-129 57-80 (80)
27 cd03457 intradiol_dioxygenase_ 86.7 1 2.2E-05 41.1 4.6 64 208-277 29-99 (188)
28 cd03866 M14_CPM Peptidase M14 86.3 1.5 3.3E-05 43.9 6.0 59 205-287 294-352 (376)
29 COG3485 PcaH Protocatechuate 3 86.1 1.3 2.8E-05 41.7 5.0 93 208-303 75-191 (226)
30 cd03858 M14_CP_N-E_like Carbox 85.1 1.5 3.2E-05 43.6 5.2 56 206-287 298-353 (374)
31 TIGR02422 protocat_beta protoc 84.9 1.7 3.7E-05 40.7 5.2 55 208-263 63-121 (220)
32 cd03459 3,4-PCD Protocatechuat 84.1 2 4.4E-05 38.1 5.1 57 207-264 17-77 (158)
33 cd03464 3,4-PCD_beta Protocate 84.0 2 4.3E-05 40.2 5.2 55 208-263 68-126 (220)
34 PF00775 Dioxygenase_C: Dioxyg 83.7 1.5 3.3E-05 39.8 4.2 66 207-278 31-97 (183)
35 cd03863 M14_CPD_II The second 82.8 2.6 5.7E-05 42.3 5.9 58 205-287 296-353 (375)
36 PF02369 Big_1: Bacterial Ig-l 82.5 2 4.4E-05 34.8 4.1 62 206-284 25-89 (100)
37 cd03461 1,2-HQD Hydroxyquinol 82.4 4.2 9.2E-05 39.3 6.9 55 207-263 122-176 (277)
38 cd00421 intradiol_dioxygenase 81.1 3 6.5E-05 36.2 4.9 66 207-278 13-79 (146)
39 TIGR02423 protocat_alph protoc 81.0 3 6.5E-05 38.2 5.1 56 207-263 41-100 (193)
40 cd03458 Catechol_intradiol_dio 80.8 2.5 5.4E-05 40.5 4.7 55 207-263 106-160 (256)
41 TIGR02438 catachol_actin catec 80.4 2.7 5.8E-05 40.8 4.8 55 207-263 134-188 (281)
42 TIGR02439 catechol_proteo cate 79.9 2.6 5.7E-05 40.9 4.6 55 207-263 130-184 (285)
43 cd03460 1,2-CTD Catechol 1,2 d 79.7 2.4 5.2E-05 41.1 4.3 55 207-263 126-180 (282)
44 PF08400 phage_tail_N: Prophag 79.7 5.9 0.00013 34.5 6.2 61 212-287 8-68 (134)
45 PF05738 Cna_B: Cna protein B- 77.9 2.6 5.7E-05 31.1 3.1 60 222-303 2-63 (70)
46 TIGR02465 chlorocat_1_2 chloro 77.6 4.1 8.9E-05 38.8 5.0 55 207-263 100-154 (246)
47 PF03698 UPF0180: Uncharacteri 77.6 2.6 5.5E-05 33.5 3.1 23 107-129 58-80 (80)
48 cd03867 M14_CPZ Peptidase M14- 75.6 4.6 0.0001 40.7 5.1 57 205-287 317-373 (395)
49 cd03864 M14_CPN Peptidase M14 74.9 6 0.00013 40.0 5.7 56 206-287 316-371 (392)
50 smart00634 BID_1 Bacterial Ig- 74.9 7.6 0.00016 30.6 5.2 74 197-286 12-85 (92)
51 PF05688 DUF824: Salmonella re 74.5 3 6.4E-05 30.0 2.4 25 207-232 16-40 (47)
52 cd03462 1,2-CCD chlorocatechol 72.9 6 0.00013 37.7 4.9 55 207-263 101-155 (247)
53 cd06245 M14_CPD_III The third 72.7 5.4 0.00012 39.8 4.7 57 205-288 286-342 (363)
54 PF05751 FixH: FixH; InterPro 70.2 19 0.00041 30.4 7.0 63 205-281 68-130 (146)
55 PF14686 fn3_3: Polysaccharide 68.9 8.8 0.00019 31.2 4.4 28 251-283 41-68 (95)
56 PF12866 DUF3823: Protein of u 65.5 8.6 0.00019 36.0 4.2 64 205-286 21-88 (222)
57 PF11288 DUF3089: Protein of u 64.5 14 0.0003 34.3 5.3 50 81-134 72-123 (207)
58 PF01835 A2M_N: MG2 domain; I 61.2 47 0.001 26.0 7.2 60 214-284 25-86 (99)
59 cd03865 M14_CPE_H Peptidase M1 60.5 16 0.00035 37.2 5.4 55 207-287 327-381 (402)
60 PF07210 DUF1416: Protein of u 57.6 28 0.00061 28.0 5.2 54 207-283 9-62 (85)
61 PF12836 HHH_3: Helix-hairpin- 50.8 8.4 0.00018 28.7 1.2 33 7-39 10-47 (65)
62 PRK02515 psbU photosystem II c 49.9 26 0.00056 30.5 4.1 34 7-40 57-91 (132)
63 KOG2649 Zinc carboxypeptidase 49.4 24 0.00053 36.7 4.6 74 205-304 377-456 (500)
64 PF13446 RPT: A repeated domai 46.2 45 0.00098 24.4 4.5 41 113-154 15-55 (62)
65 COG2373 Large extracellular al 43.7 57 0.0012 39.0 7.0 45 205-264 304-348 (1621)
66 PRK03892 ribonuclease P protei 42.4 1.1E+02 0.0023 28.9 7.2 53 97-151 158-216 (216)
67 COG1691 NCAIR mutase (PurE)-re 41.8 19 0.00042 34.2 2.3 56 86-141 28-90 (254)
68 PF13986 DUF4224: Domain of un 40.6 57 0.0012 23.1 4.1 31 85-115 3-38 (47)
69 COG2967 ApaG Uncharacterized p 40.3 32 0.00068 29.6 3.1 45 244-288 40-111 (126)
70 PF07106 TBPIP: Tat binding pr 36.5 2.7E+02 0.0059 24.3 8.7 117 29-161 14-142 (169)
71 PF06488 L_lac_phage_MSP: Lact 34.4 70 0.0015 30.2 4.7 49 245-303 251-299 (301)
72 PF11629 Mst1_SARAH: C termina 33.5 38 0.00081 24.6 2.2 34 70-103 5-38 (49)
73 cd03869 M14_CPX_like Peptidase 33.3 88 0.0019 32.0 5.7 56 207-288 330-385 (405)
74 PF01190 Pollen_Ole_e_I: Polle 31.4 89 0.0019 24.8 4.4 37 217-264 17-53 (97)
75 PF09430 DUF2012: Protein of u 30.5 1.9E+02 0.0041 24.2 6.4 40 252-302 22-61 (123)
76 PF04079 DUF387: Putative tran 30.2 2.5E+02 0.0054 24.8 7.4 73 74-147 15-91 (159)
77 PF07037 DUF1323: Putative tra 29.7 51 0.0011 28.3 2.8 83 8-96 1-104 (122)
78 COG2357 PpGpp synthetase catal 29.2 42 0.00091 31.8 2.4 66 88-156 31-98 (231)
79 cd01976 Nitrogenase_MoFe_alpha 28.3 2.1E+02 0.0045 29.0 7.4 49 96-144 234-284 (421)
80 PF14533 USP7_C2: Ubiquitin-sp 27.4 48 0.001 30.5 2.5 28 102-129 129-157 (213)
81 PF07495 Y_Y_Y: Y_Y_Y domain; 27.1 1.1E+02 0.0024 21.9 3.9 31 271-301 35-65 (66)
82 PF05985 EutC: Ethanolamine am 27.1 1.4E+02 0.003 28.4 5.5 80 35-120 35-118 (237)
83 COG1477 ApbE Membrane-associat 26.8 35 0.00076 34.0 1.5 22 207-228 256-277 (337)
84 PRK11072 bifunctional glutamin 26.6 1.3E+02 0.0028 34.1 6.0 103 13-115 555-689 (943)
85 PF04536 TPM: TLP18.3, Psb32 a 26.5 1.1E+02 0.0024 24.3 4.3 29 85-113 2-30 (119)
86 PF06299 DUF1045: Protein of u 26.3 46 0.00099 29.8 2.0 18 93-110 87-104 (160)
87 PF08006 DUF1700: Protein of u 25.9 1.4E+02 0.0029 26.4 5.0 38 116-153 2-39 (181)
88 COG5266 CbiK ABC-type Co2+ tra 25.5 1.4E+02 0.003 28.9 5.2 69 205-283 171-240 (264)
89 PRK00135 scpB segregation and 25.4 2.3E+02 0.0051 25.8 6.5 71 74-146 22-98 (188)
90 KOG1948 Metalloproteinase-rela 25.3 84 0.0018 35.4 4.1 73 207-303 317-400 (1165)
91 PRK14108 bifunctional glutamin 24.8 1.8E+02 0.0039 33.1 6.7 104 12-115 581-709 (986)
92 PF00148 Oxidored_nitro: Nitro 24.6 2.8E+02 0.006 27.3 7.4 34 96-129 207-243 (398)
93 PF10577 UPF0560: Uncharacteri 24.5 1.4E+02 0.003 33.3 5.5 60 208-287 3-62 (807)
94 TIGR03769 P_ac_wall_RPT actino 24.1 61 0.0013 22.4 1.9 12 273-284 11-22 (41)
95 cd01971 Nitrogenase_VnfN_like 23.9 1.8E+02 0.0039 29.4 6.1 37 96-132 222-262 (427)
96 PF09058 L27_1: L27_1; InterP 23.7 72 0.0016 24.4 2.4 38 118-155 12-49 (64)
97 TIGR02461 osmo_MPG_phos mannos 22.9 1.7E+02 0.0037 26.8 5.2 36 87-129 18-53 (225)
98 PF14579 HHH_6: Helix-hairpin- 21.8 1.1E+02 0.0024 24.1 3.2 25 19-43 36-63 (90)
99 COG5255 Uncharacterized protei 21.8 52 0.0011 30.9 1.5 87 58-148 120-210 (239)
100 TIGR01641 phageSPP1_gp7 phage 21.7 2.3E+02 0.0049 22.7 5.2 36 112-147 10-45 (108)
101 TIGR03223 Phn_opern_protn puta 21.5 67 0.0015 30.4 2.2 26 85-110 134-164 (228)
102 PF12652 CotJB: CotJB protein; 21.3 1E+02 0.0022 24.3 2.9 46 54-113 17-62 (78)
103 PRK15316 RatA-like protein; Pr 20.7 1.2E+02 0.0025 37.2 4.2 26 207-233 2164-2189(2683)
104 COG2605 Predicted kinase relat 20.1 2.7E+02 0.0059 27.7 6.1 71 85-156 126-238 (333)
No 1
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=100.00 E-value=5.5e-47 Score=315.47 Aligned_cols=109 Identities=33% Similarity=0.602 Sum_probs=100.1
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCC
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 285 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 285 (327)
+|||||||||++|+||+||+|+|++++. ++.|+.|++++||+||||+.|+. ++.+.+|+|||+|+||+
T Consensus 1 ~~lStHVLDt~~G~PAagv~V~L~~~~~-----------~~~w~~l~~~~Tn~DGR~~~~l~-~~~~~~G~Y~l~F~t~~ 68 (113)
T cd05469 1 CPLMVKVLDAVRGSPAANVAIKVFRKTA-----------DGSWEIFATGKTNEDGELHGLIT-EEEFXAGVYRVEFDTKS 68 (113)
T ss_pred CCceEEEEeCCCCccCCCCEEEEEEecC-----------CCceEEEEEEEECCCCCccCccc-cccccceEEEEEEehHH
Confidence 5899999999999999999999999752 24799999999999999998876 56789999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020329 286 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 327 (327)
Q Consensus 286 Yf~----~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTYRGS 327 (327)
||+ ++|||+|+|+|.|+|++ ++|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~V~i~F~v~d~~-~~HYHvPLLlSP~gYSTYRGS 113 (113)
T cd05469 69 YWKALGITPFHEYAEVVFTANDSG-HRHYTIALLLSPFSYSTTAVV 113 (113)
T ss_pred hHhhCCCCCCcceEEEEEEECCCC-CCCEEeCEEecCCeeeeecCC
Confidence 997 78999999999999841 799999999999999999998
No 2
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=100.00 E-value=8.3e-47 Score=314.59 Aligned_cols=108 Identities=51% Similarity=0.941 Sum_probs=100.8
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCC
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 285 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 285 (327)
++||||||||++|+||+||+|+|+++++ +.|+.|++++||+||||++|+...+.+.+|.|||+|+||+
T Consensus 1 ~~lstHVLDt~~G~PAagv~V~L~~~~~------------~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~ 68 (112)
T TIGR02962 1 SPLSTHVLDTTSGKPAAGVPVTLYRLDG------------SGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGD 68 (112)
T ss_pred CCceEEEEeCCCCccCCCCEEEEEEecC------------CCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhh
Confidence 4799999999999999999999998763 4699999999999999999887667889999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020329 286 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 327 (327)
Q Consensus 286 Yf~----~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTYRGS 327 (327)
||+ ++|||+|+|+|+|+++ .+|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~v~i~F~i~~~--~~HyHvPlllSP~~ySTYRGS 112 (112)
T TIGR02962 69 YFAARGVETFYPEVEVVFTIADP--GQHYHVPLLLSPYGYSTYRGS 112 (112)
T ss_pred hhhhcCCCCCccceEEEEEECCC--CCCEEEeEEecCCceecccCC
Confidence 997 7899999999999985 799999999999999999998
No 3
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=100.00 E-value=7.9e-46 Score=325.43 Aligned_cols=146 Identities=29% Similarity=0.419 Sum_probs=139.4
Q ss_pred CCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHHH
Q 020329 8 LDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKAE 77 (327)
Q Consensus 8 m~~~~f~~~~~-----spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~-----ls~~S~~E 77 (327)
|++++|+++|| +||+|+++|++|||+|+++|++++.++| ..++.++|+++|++||+||++. ++.+|++|
T Consensus 1 m~~~~fv~~l~~l~E~spw~a~~~~~~rPf~s~~~L~~a~~~~~-~~~~~~~~~~ll~~HP~Lg~~~~~~~~ls~~S~~E 79 (157)
T TIGR03164 1 MDKADFVAALGDIFEHSPWIAERAWAQRPFDSIEDLHAAMVGAV-RAASPEQQLALIRAHPDLAGKLAVAGELTAESTSE 79 (157)
T ss_pred CCHHHHHHHHhhHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHhCCcccccccccccchHhhHHH
Confidence 78999999886 8999999999999999999999999996 6689999999999999999987 68999999
Q ss_pred hhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 020329 78 QSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKL 154 (327)
Q Consensus 78 Qa~a-l~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l 154 (327)
|+++ ++.++++++++|.+||++|++||||||||||+|+++++||++|++||+|++++|+++|+.||+|||++||+++
T Consensus 80 Q~~agl~~~~~~~~~~L~~lN~~Y~~kFGfpFvi~v~g~~~~~Il~~l~~Rl~n~~~~E~~~a~~Ev~kIa~~RL~~l 157 (157)
T TIGR03164 80 QASAGLDQLSQEEFARFTRLNNAYRARFGFPFIMAVKGKTKQSILAAFEARLNNDRETEFARALREIERIARFRLRDL 157 (157)
T ss_pred HHhccccCCCHHHHHHHHHHHHHHHHHCCCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9986 7789999999999999999999999999999999999999999999999999999999999999999999875
No 4
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=100.00 E-value=1.5e-46 Score=312.96 Aligned_cols=108 Identities=51% Similarity=0.938 Sum_probs=101.1
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCC
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 285 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 285 (327)
++||||||||+.|+||+||+|+|+++++ +.|+.|++++||+||||+.|+..++.+.+|+|||+|+||+
T Consensus 1 ~~lstHVLDt~~G~PAagv~V~L~~~~~------------~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~ 68 (112)
T cd05822 1 GPLSTHVLDTATGKPAAGVAVTLYRLDG------------NGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGA 68 (112)
T ss_pred CCceeEEEeCCCCcccCCCEEEEEEecC------------CCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhh
Confidence 4799999999999999999999999763 4699999999999999999887667899999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020329 286 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 327 (327)
Q Consensus 286 Yf~----~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTYRGS 327 (327)
||+ ++|||+|+|+|.|+++ .+|||||||||||||||||||
T Consensus 69 Yf~~~~~~~F~p~V~i~F~i~~~--~~HYHvPlLlSP~sYSTYRGS 112 (112)
T cd05822 69 YFAARGQESFYPEVEVRFTITDP--TEHYHVPLLLSPFGYSTYRGS 112 (112)
T ss_pred hhhhcCCCccceeeEEEEEECCC--CCCEEEeEEecCCceecccCC
Confidence 998 6899999999999985 799999999999999999998
No 5
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1e-45 Score=322.34 Aligned_cols=153 Identities=30% Similarity=0.378 Sum_probs=146.6
Q ss_pred CCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020329 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (327)
Q Consensus 7 ~m~~~~f~~~~~-----spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~-----ls~~S~~ 76 (327)
+|++++|++.|| |||+|+++|+.|||.|++.|+.+|+.++ ..++.++|+++|++||||++|. +++.|++
T Consensus 13 ~~dr~~Fv~~fg~ifEhSpWvaErA~~~~pf~s~~~l~~am~~~v-~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~ 91 (176)
T COG3195 13 KLDREAFVETFGGIFEHSPWVAERAYDLRPFASAEGLHAAMCRAV-RAASEEERLALIRAHPDLAGKAAIAGELTAESTS 91 (176)
T ss_pred hccHHHHHHHhhhHhhcCchHHHHHhccCCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHH
Confidence 589999999997 9999999999999999999999999996 5589999999999999999988 8999999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhh
Q 020329 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 155 (327)
Q Consensus 77 EQa~a-l~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~ 155 (327)
||+++ ||.|+++|+++|..||.+|.+||||||||||+|+++++|++++++||.|+.++|++.|+.||.+||++||.+|+
T Consensus 92 EQasAGLd~Ls~~E~a~f~~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~~Rl~dll 171 (176)
T COG3195 92 EQASAGLDRLSPEEFARFTELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIALLRLADLL 171 (176)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 020329 156 SAKAK 160 (327)
Q Consensus 156 ~~~~~ 160 (327)
.++++
T Consensus 172 ~~~~~ 176 (176)
T COG3195 172 PEGNP 176 (176)
T ss_pred cccCC
Confidence 87553
No 6
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=100.00 E-value=3.8e-46 Score=309.06 Aligned_cols=108 Identities=44% Similarity=0.758 Sum_probs=102.0
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCC
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 285 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 285 (327)
+.||||||||++|+||+||+|+|+++++ ++|+.|.+..||+||||+.++..++.+.+|+|+|+|.+|+
T Consensus 9 G~LTTHVLDta~GkPAagv~V~L~rl~~------------~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gd 76 (124)
T COG2351 9 GRLTTHVLDTASGKPAAGVKVELYRLEG------------NQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGD 76 (124)
T ss_pred ceeeeeeeecccCCcCCCCEEEEEEecC------------CcceeeeEEEecCCCcccccccCccccccceEEEEEEcch
Confidence 4799999999999999999999999974 4899999999999999998888889999999999999999
Q ss_pred CCC--------CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020329 286 YCP--------EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 327 (327)
Q Consensus 286 Yf~--------~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTYRGS 327 (327)
||+ ++|||+|+|+|+|.|. ++|||||||||||||||||||
T Consensus 77 Yf~~~g~~~~~~~Fl~~V~vrF~iad~--~~HYHVPLLlSPygYSTYRGS 124 (124)
T COG2351 77 YFKSRGVQLADPPFLDVVPVRFGIADV--DEHYHVPLLLSPYGYSTYRGS 124 (124)
T ss_pred hhhccCcccCCCCccceEEEEEEEcCC--CCceeeeeEecCcccceecCC
Confidence 997 4699999999999985 799999999999999999998
No 7
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=100.00 E-value=5.5e-45 Score=322.71 Aligned_cols=149 Identities=36% Similarity=0.569 Sum_probs=137.6
Q ss_pred CCCHHHHHHhh----CCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCCCCcccHHHhhHhh
Q 020329 7 VLDEEELLGCC----GSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQWSKAEQSTAL 82 (327)
Q Consensus 7 ~m~~~~f~~~~----~spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~ls~~S~~EQa~al 82 (327)
+|++++|+..| +.+.||+++|++|||+|+++|++++.++| ..++.++|+++|++||+||++.....|+.||+ ++
T Consensus 13 ~l~~~~f~~~l~~~~e~~~Wa~~~~~~RPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~S~~EQ~-gl 90 (166)
T PRK13798 13 ALPERQAVHALFECCHSTAWARRLAAARPFADHDALLAAADEAL-AGLSEADIDEALAGHPRIGERPASKASAREQA-GV 90 (166)
T ss_pred CCCHHHHHHHHHHHhcChHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCCcccCccccccCHHHhc-cc
Confidence 58999998744 44444999999999999999999999996 55899999999999999999985556999999 56
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020329 83 ATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSA 157 (327)
Q Consensus 83 ~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~~~ 157 (327)
+.++++++++|.+||++|++||||||||||+|+|+++||++|++||+|++++|+.+|+.||.|||++||.+||++
T Consensus 91 ~~l~~~~~~~l~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~lRL~~l~~~ 165 (166)
T PRK13798 91 ADADEAVMAALAAGNRAYEEKFGFVFLICATGRSADEMLAALQQRLHNDPETERKVVREELAKINRLRLERLLGP 165 (166)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999975
No 8
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=100.00 E-value=1.5e-46 Score=312.96 Aligned_cols=108 Identities=46% Similarity=0.859 Sum_probs=99.0
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCC
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 285 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 285 (327)
++||||||||++|+||+||+|+|++++. +++|+.|++++||+||||+.|+..++.+.+|+|||+|+||+
T Consensus 1 ~~iStHVLDt~~G~PA~gv~V~L~~~~~-----------~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~ 69 (112)
T PF00576_consen 1 CPISTHVLDTTTGKPAAGVPVTLYRLDS-----------DGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGD 69 (112)
T ss_dssp SSEEEEEEETTTTEE-TT-EEEEEEEET-----------TSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHH
T ss_pred CCcEEEEeeCCCCCCccCCEEEEEEecC-----------CCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHH
Confidence 4799999999999999999999999873 46899999999999999998887788999999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccC
Q 020329 286 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRG 326 (327)
Q Consensus 286 Yf~----~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTYRG 326 (327)
||+ ++|||+|+|+|.|+++ .+||||||||||||||||||
T Consensus 70 Yf~~~~~~~F~p~V~I~F~v~d~--~~HYHvPLLlSP~gYSTYRG 112 (112)
T PF00576_consen 70 YFAAQGIPSFYPEVEIRFTVKDP--QQHYHVPLLLSPFGYSTYRG 112 (112)
T ss_dssp HHHHTTCSTSESEEEEEEEESTT--TSEEEEEEEEETTEEEEEEB
T ss_pred hHhhcCCCeeeecceEEEEECCC--CCcEEEEEEecCceeeEEcC
Confidence 998 8999999999999996 69999999999999999998
No 9
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=100.00 E-value=7.5e-45 Score=319.56 Aligned_cols=147 Identities=34% Similarity=0.554 Sum_probs=135.1
Q ss_pred CCCHHHHHHhh----CCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHHH
Q 020329 7 VLDEEELLGCC----GSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKAE 77 (327)
Q Consensus 7 ~m~~~~f~~~~----~spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~-----ls~~S~~E 77 (327)
.|++++|++.| .++.|++++|++|||+|+++|++++.++| ..++.++|+++|++||+||++. ++.+|..|
T Consensus 3 ~l~~~~f~~~l~~~~e~~~W~~~~~~~RPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~~~~~~S~~E 81 (158)
T TIGR03180 3 QLPADEASATLMECCAIPAWARTLVAARPFASAEALLAAADQAW-QNLSEQDLFEALAGHPRIGEKPAGQAAYAATSRRE 81 (158)
T ss_pred CCCHHHHHHHHHHhccChHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCCcccCccccccchhhhhHHH
Confidence 58899998754 44444479999999999999999999996 5589999999999999999987 57789999
Q ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhh
Q 020329 78 QSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 155 (327)
Q Consensus 78 Qa~al~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~ 155 (327)
|+ +++.++++++++|.+||++|++||||||||||+|+|+++||+.|++||.|++++|+++|++||.|||++||.+|+
T Consensus 82 Qa-gl~~~~~~~~~~L~~lN~~Y~~kFGfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~~RL~~l~ 158 (158)
T TIGR03180 82 QA-GVDGADEETRAALLEGNAAYEEKFGRIFLIRAAGRSAEEMLDALQARLPNDPEQELTIAAEQLRKINRLRLSRLI 158 (158)
T ss_pred Hh-cccCCCHHHHHHHHHHHHHHHHHCCCeEEEeeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 97 566899999999999999999999999999999999999999999999999999999999999999999999985
No 10
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=100.00 E-value=4.1e-44 Score=301.33 Aligned_cols=111 Identities=32% Similarity=0.545 Sum_probs=99.8
Q ss_pred CCCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEE
Q 020329 201 PTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKIT 280 (327)
Q Consensus 201 ~~~~~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~ 280 (327)
+.++|+|||||||||++|+||+||+|+|++.+. ++.|+.|++++||+||||+.|+. ++.+.+|.|||+
T Consensus 2 ~~~~~~~ittHVLDt~~G~PAaGV~V~L~~~~~-----------~~~w~~l~~~~Tn~DGR~~~ll~-~~~~~~G~Y~l~ 69 (121)
T cd05821 2 GGDSKCPLMVKVLDAVRGSPAANVAVKVFKKTA-----------DGSWEPFASGKTTETGEIHGLTT-DEQFTEGVYKVE 69 (121)
T ss_pred CCCCCCCcEEEEEECCCCccCCCCEEEEEEecC-----------CCceEEEEEEEECCCCCCCCccC-ccccCCeeEEEE
Confidence 456799999999999999999999999998641 25799999999999999998664 457889999999
Q ss_pred EeeCCCCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccc
Q 020329 281 FNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTY 324 (327)
Q Consensus 281 F~tg~Yf~----~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTY 324 (327)
|+||+||+ ++|||+|+|+|.|++++ .+||||||||||||||||
T Consensus 70 F~tg~Yf~~~~~~~F~p~V~I~F~i~d~~-~~HYHVPLLlSP~gYST~ 116 (121)
T cd05821 70 FDTKAYWKKLGISPFHEYAEVVFTANDSG-HRHYTIAALLSPYSYSTT 116 (121)
T ss_pred EehhHhhhhcCCCCCCceEEEEEEECCCC-CCCeEeCeEecCCcceeE
Confidence 99999997 78999999999999851 489999999999999998
No 11
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=100.00 E-value=1.8e-43 Score=310.86 Aligned_cols=146 Identities=41% Similarity=0.600 Sum_probs=124.6
Q ss_pred CCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020329 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (327)
Q Consensus 7 ~m~~~~f~~~~~-----spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~-----ls~~S~~ 76 (327)
+|++++|+..|+ +||+++.+++.|||.|+++|++++.++| ..++.++|+++|++||+||++. ++..|..
T Consensus 3 ~l~~~~~~~~l~~~~e~~~w~~~~a~~~rPf~s~~~L~~a~~~~~-~~~~~~~~~~~l~aHP~lg~~~~~~~~~s~~S~~ 81 (159)
T PF09349_consen 3 ALSPEEFVAALGNCFESSPWAAERAAAARPFASVDALIAAADEAV-RSLSEEDKLEALRAHPRLGERAARAGNLSAASAS 81 (159)
T ss_dssp CS-HHHHHHHHTTSSTTHHHHHHHHHCGGS-SSHHHHHHHHHHHH-HCS-HHHHHHHHHTS--TTSHHHHHCCCHHHHHH
T ss_pred CCCHHHHHHHHHhHhCCCHHHHHHHhccCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCcccccccccccccchhhhh
Confidence 588999987664 6888888888899999999999999996 5689999999999999999974 8999999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 020329 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAK 153 (327)
Q Consensus 77 EQa~a-l~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~ 153 (327)
||+++ ++.++++++++|.+||++|++||||||||||+|+|+++||++|++||+|++++|+.+|++||.|||++||+|
T Consensus 82 EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGf~Fvi~~~g~s~~~Il~~l~~Rl~n~~~~E~~~A~~Ev~kIa~~RL~k 159 (159)
T PF09349_consen 82 EQASAGLDSLDEEELAELAALNQAYEEKFGFPFVICARGRSAAEILAALERRLNNDPEEELRIALEEVAKIARLRLEK 159 (159)
T ss_dssp HTHHCCTTSTHHHHHHHHHHHHHHHHHHHSS-----GTT--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccCCHHHHHHHHHHHHHHHHHcCCceEeecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99987 778999999999999999999999999999999999999999999999999999999999999999999986
No 12
>smart00095 TR_THY Transthyretin.
Probab=100.00 E-value=1.4e-43 Score=298.16 Aligned_cols=108 Identities=32% Similarity=0.575 Sum_probs=98.0
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEee
Q 020329 204 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 283 (327)
Q Consensus 204 ~~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 283 (327)
+++|||||||||++|+||+||+|+|++... ++.|+.|++++||+||||+.|+. ++.+.+|+|||+|+|
T Consensus 2 ~~~plTtHVLDt~~G~PAagv~V~L~~~~~-----------~~~w~~la~~~Tn~DGR~~~ll~-~~~~~~G~Y~l~F~t 69 (121)
T smart00095 2 SKCPLMVKVLDAVRGSPAVNVAVKVFKKTE-----------EGTWEPFASGKTNESGEIHELTT-DEKFVEGLYKVEFDT 69 (121)
T ss_pred CCCCeEEEEEECCCCccCCCCEEEEEEeCC-----------CCceEEEEEEecCCCccccCccC-cccccceEEEEEEeh
Confidence 578999999999999999999999998651 25799999999999999998664 567889999999999
Q ss_pred CCCCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccc
Q 020329 284 GKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTY 324 (327)
Q Consensus 284 g~Yf~----~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTY 324 (327)
|+||+ ++|||+|+|+|+|+++ ..+||||||||||||||||
T Consensus 70 g~Yf~~~~~~~F~p~V~V~F~i~d~-~~~HYHVPLLlSP~~YST~ 113 (121)
T smart00095 70 KSYWKALGISPFHEYADVVFTANDS-GHRHYTIAALLSPYSYSTT 113 (121)
T ss_pred hHhHhhcCCCCCCceEEEEEEECCC-CCCCeEECeEecCCcceeE
Confidence 99997 7899999999999985 1489999999999999998
No 13
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=100.00 E-value=3.1e-42 Score=296.43 Aligned_cols=107 Identities=41% Similarity=0.758 Sum_probs=98.4
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCC
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 285 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 285 (327)
++|||||||+++|+||+||+|+|++.+ +++|+.|++++||+||||+.+++ .+.+.+|.|+|+|++++
T Consensus 27 ~~Is~HVLDt~~G~PA~gV~V~L~~~~------------~~~w~~l~~~~Td~dGR~~~l~~-~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 27 NILSVHILNQQTGKPAADVTVTLEKKA------------DNGWLQLNTAKTDKDGRIKALWP-EQTATTGDYRVVFKTGD 93 (137)
T ss_pred CCeEEEEEeCCCCcCCCCCEEEEEEcc------------CCceEEEEEEEECCCCCCccccC-cccCCCeeEEEEEEcch
Confidence 589999999999999999999998864 35899999999999999998654 34588999999999999
Q ss_pred CCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020329 286 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 327 (327)
Q Consensus 286 Yf~----~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTYRGS 327 (327)
||+ ++|||+|+|+|.|+++ .+|||||||||||||||||||
T Consensus 94 Yf~~~~~~~F~p~v~v~F~i~~~--~~HyHvPlllsP~~yStyRGs 137 (137)
T PRK15036 94 YFKKQNLESFFPEIPVEFHINKV--NEHYHVPLLLSQYGYSTYRGS 137 (137)
T ss_pred hhhccCCCCCcceeEEEEEECCC--CCCeEECeEecCCccccccCC
Confidence 997 7899999999999985 799999999999999999998
No 14
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-41 Score=279.23 Aligned_cols=110 Identities=48% Similarity=0.866 Sum_probs=103.2
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEee
Q 020329 204 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 283 (327)
Q Consensus 204 ~~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 283 (327)
+.+|||+||||++.|.||+||+|.|+++.+ +..|+.|+++.||+|||++ |+.....+.+|+||++|+|
T Consensus 19 ~~~~itahVLd~s~GsPA~gVqV~~f~~~~-----------~~~w~~igs~~T~~nGrv~-~~~~~~tl~~GtYr~~~dT 86 (132)
T KOG3006|consen 19 PGPPITAHVLDISRGSPAAGVQVHLFILAN-----------DDTWTPIGSGFTQDNGRVD-WVSPDFTLIPGTYRLVFDT 86 (132)
T ss_pred CCCCcEeEEeecccCCcccceEEEEEEecC-----------CCcccCccccccccCceee-cccchhhhccceEEEEEec
Confidence 458999999999999999999999999875 3589999999999999999 8877788999999999999
Q ss_pred CCCCC----CCCCceeEEEEEeecCCCCCceeeeeeecCCccccccCC
Q 020329 284 GKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 327 (327)
Q Consensus 284 g~Yf~----~~F~p~V~V~F~v~~~~~~~HYHvPLLlSP~sYSTYRGS 327 (327)
+.||+ ++|||+|+|+|.|+|. .||||||||||||||||||||
T Consensus 87 ~~Y~~a~gv~sFypyvevvf~in~s--~qhyhvpllLsPygySTyrgs 132 (132)
T KOG3006|consen 87 EPYYKALGVESFYPYVEVVFNINDS--TQHYHVPLLLSPYGYSTYRGS 132 (132)
T ss_pred ccccccCCcccccccEEEEEEeccC--cceEEEeEEecccceeeeccC
Confidence 99998 7999999999999996 599999999999999999998
No 15
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=100.00 E-value=8.2e-40 Score=338.28 Aligned_cols=155 Identities=26% Similarity=0.362 Sum_probs=145.8
Q ss_pred CCCHHHHHHhhC-----CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020329 7 VLDEEELLGCCG-----STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (327)
Q Consensus 7 ~m~~~~f~~~~~-----spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~-----ls~~S~~ 76 (327)
+|++++|+++|+ +||||+++|++|||+|+++|++++.++| ..++.++|+++|++||+||++. ++.+|++
T Consensus 10 ~l~~~~~~~~l~~~~e~~~~~a~~~~~~rPf~~~~~l~~a~~~~~-~~~~~~~~~~~l~~hP~lg~~~~~~~~~~~~S~~ 88 (591)
T PRK13590 10 AASAAEATALLDGLYEHSPWIAERALAQRPFRSLAQLKHALVQVV-REAGRDAQLGLIRAHPELAGKAMVAGSLTAESTH 88 (591)
T ss_pred CCCHHHHHHHhhhhccCChHHHHHHHhcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCccccCCcccCccchhHhHH
Confidence 699999988665 8999999999999999999999999996 5689999999999999999976 6889999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-----CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 020329 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASG-----RTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELR 150 (327)
Q Consensus 77 EQa~a-l~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G-----~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~R 150 (327)
||+++ ++.++++++++|.+||++|++||||||||||+| +++++||++|++||.|++++|+++|++||.|||++|
T Consensus 89 EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fvi~v~~~~a~g~~~~~il~~~~~Rl~n~~~~E~~~a~~e~~~I~~~R 168 (591)
T PRK13590 89 EQGKAGLTHCTPEEFARIQQLNADYNARFGFPFILAVRGPRGLGLSRQEIIATFARRLDNHPDFELAEALRNIHRIAEIR 168 (591)
T ss_pred HHHhhhcccCCHHHHHHHHHHHHHHHHhCCCeEEEEEcCccccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99975 888999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhhhcccccCC
Q 020329 151 LAKLFSAKAKAS 162 (327)
Q Consensus 151 L~~l~~~~~~~~ 162 (327)
|++|+..++++.
T Consensus 169 l~~~~~~~~~~~ 180 (591)
T PRK13590 169 LNDKFGAEPVLG 180 (591)
T ss_pred HHHHhCCCchHH
Confidence 999999877654
No 16
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=100.00 E-value=9.8e-40 Score=337.75 Aligned_cols=154 Identities=26% Similarity=0.350 Sum_probs=143.5
Q ss_pred CCCHHHHHHhh-----CCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----CCcccHH
Q 020329 7 VLDEEELLGCC-----GSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----SSQWSKA 76 (327)
Q Consensus 7 ~m~~~~f~~~~-----~spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~-----ls~~S~~ 76 (327)
+|++++|++.| .+||||+++|++|||+|+++|++++.++| ..++.++|+++|++||+||++. ++.+|++
T Consensus 10 ~~~~~~~~~~~~~~~e~~~w~a~~~~~~rPf~~~~~l~~a~~~~~-~~~~~~~~~~~l~~HP~lg~~~~~~~~~~~~S~~ 88 (591)
T PRK13799 10 AADLAAAADLLDGIYEHSPWIAEAAAALGPFPSIAAIKQALAGVL-DAADRAAKLDLIRAHPELAGKAAEAGELTAESTG 88 (591)
T ss_pred CCCHHHHHHHHHhHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhCcccccCcccccccchhhHh
Confidence 68999998754 49999999999999999999999999996 6689999999999999999976 6889999
Q ss_pred HhhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCC-----CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 020329 77 EQSTA-LATANESSSQELSDWNNRYRLRFGFIFIICASGR-----TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELR 150 (327)
Q Consensus 77 EQa~a-l~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~-----s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~R 150 (327)
||+++ ++.++++++++|.+||++|++||||||||||+|+ ++++||++|++||.|++++|+++|++||+|||++|
T Consensus 89 EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fii~~~g~~~~~~~~~~il~~l~~Rl~n~~e~E~~~a~~e~~~I~~~R 168 (591)
T PRK13799 89 EQAKAGLNLCTPEEFAAIQKLNADYGKKFGFPFILAVKGARGAGLAKAEIIATFERRLHNHPDDELGEALRNIGRIAEIR 168 (591)
T ss_pred HHHhhhcccCCHHHHHHHHHHHHHHHHhcCCeEEEEEcCcccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99965 8789999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred HHhhhcccccC
Q 020329 151 LAKLFSAKAKA 161 (327)
Q Consensus 151 L~~l~~~~~~~ 161 (327)
|++||...+.+
T Consensus 169 l~~l~~~~~~~ 179 (591)
T PRK13799 169 INDKFGYTPAI 179 (591)
T ss_pred HHHHhCCChhH
Confidence 99999985554
No 17
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=100.00 E-value=1.3e-38 Score=322.19 Aligned_cols=149 Identities=38% Similarity=0.666 Sum_probs=134.8
Q ss_pred CCCHHHHHH----hhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-----C------C
Q 020329 7 VLDEEELLG----CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-----S------S 71 (327)
Q Consensus 7 ~m~~~~f~~----~~~spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~-----l------s 71 (327)
+|++++|++ ||+++.|++++|++|||+|+++|+++|.++| ..++.++|+++|++||+||++. + +
T Consensus 348 al~~~~f~~~l~~c~e~spW~~~~~~~RPF~s~~aL~~a~~~~v-~~as~e~~l~aL~aHPdLg~r~a~~~~~t~~a~~t 426 (516)
T PRK13797 348 ALTPDAAREELLACCGSEDWASAVAARRPFGTLAALLPAAEQEW-WRLPESAWLEAFTAHPRIGERPTQAPAPPTSARAT 426 (516)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHhCCcccccccccccccccccch
Confidence 588888865 6664444599999999999999999999996 5579999999999999999976 2 3
Q ss_pred ccc----HHHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020329 72 QWS----KAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKIT 147 (327)
Q Consensus 72 ~~S----~~EQa~al~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa 147 (327)
.+| .+||+ +++.++++++++|++||++|++||||||||||+|+|+++||++|++||.|++++|+++|+.||.|||
T Consensus 427 ~~S~d~~~~EQA-GL~~ls~~e~~~L~~lN~aY~eKFGFpFIIca~G~s~~eILa~l~~RL~N~~e~E~~~Al~Ev~kIa 505 (516)
T PRK13797 427 VVSLDAPRREQA-AMDQAAEDVRAAFARGNAAYEERFGFIFLVRAAGRGAEEMLELLRARLAHDPEQELRIAAGQQAEIT 505 (516)
T ss_pred hccccchhhhhh-ccccCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 578 88884 4568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcc
Q 020329 148 ELRLAKLFSA 157 (327)
Q Consensus 148 ~~RL~~l~~~ 157 (327)
++||++||..
T Consensus 506 ~lRL~~ll~~ 515 (516)
T PRK13797 506 ALRLRHLITG 515 (516)
T ss_pred HHHHHHHhcc
Confidence 9999999975
No 18
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=96.79 E-value=0.00085 Score=51.33 Aligned_cols=59 Identities=34% Similarity=0.493 Sum_probs=41.9
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCCC
Q 020329 208 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 287 (327)
Q Consensus 208 iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf 287 (327)
|+-.|.|. .|.|.+|+.|.|..... .......||+||+..- ..+.+|.|+|++.-..|.
T Consensus 2 I~G~V~d~-~g~pv~~a~V~l~~~~~---------------~~~~~~~Td~~G~f~~-----~~l~~g~Y~l~v~~~g~~ 60 (82)
T PF13620_consen 2 ISGTVTDA-TGQPVPGATVTLTDQDG---------------GTVYTTTTDSDGRFSF-----EGLPPGTYTLRVSAPGYQ 60 (82)
T ss_dssp EEEEEEET-TSCBHTT-EEEET--TT---------------TECCEEE--TTSEEEE-----EEE-SEEEEEEEEBTTEE
T ss_pred EEEEEEcC-CCCCcCCEEEEEEEeeC---------------CCEEEEEECCCceEEE-----EccCCEeEEEEEEECCcc
Confidence 77899998 99999999999964321 2367899999999852 235679999999776665
No 19
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=96.69 E-value=0.0029 Score=51.53 Aligned_cols=44 Identities=30% Similarity=0.286 Sum_probs=38.1
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEE-ecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEM-WKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~-~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
...+...|-|..+|+|.+|+.|+|+. .+ -+.|+++.||+||++.
T Consensus 12 ~~~~~v~v~~L~tg~Pv~ga~V~l~~~~~---------------~~~l~~g~TD~~G~a~ 56 (97)
T PF11974_consen 12 PDGLLVWVTSLSTGKPVAGAEVELYDSRN---------------GQVLASGKTDADGFAS 56 (97)
T ss_pred CCCEEEEEeeCCCCCccCCCEEEEEECCC---------------CcEeeeeeeCCCceEE
Confidence 46689999999999999999999986 33 2479999999999986
No 20
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=92.77 E-value=0.16 Score=39.41 Aligned_cols=55 Identities=29% Similarity=0.421 Sum_probs=43.0
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCCC
Q 020329 208 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 287 (327)
Q Consensus 208 iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf 287 (327)
|+-.|+|..+|.|.+|+.|.+.... ..+.||+||+..-- +.+|.|.|.|.--.|-
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~-------------------~~~~Td~~G~F~i~------~~~g~~~l~is~~Gy~ 56 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK-------------------KGTVTDENGRFSIK------LPEGDYTLKISYIGYE 56 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc-------------------ceEEECCCeEEEEE------EcCCCeEEEEEEeCEE
Confidence 6778999999999999999985311 34799999998631 3478999999665554
No 21
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=92.50 E-value=0.34 Score=41.34 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=47.9
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 284 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 284 (327)
..|+|-||=|. -|.|+.|+.|.|.+-..++++|+. -.-+.-|.||..|.+. | ..-..|.|-+.|.-+
T Consensus 41 ~~pVT~hVen~-e~~pi~~~ev~lmKa~ds~~qPs~-------eig~~IGKTD~~Gki~-W----k~~~kG~Y~v~l~n~ 107 (131)
T PF10794_consen 41 VNPVTFHVENA-EGQPIKDFEVTLMKAADSDPQPSK-------EIGISIGKTDEEGKII-W----KNGRKGKYIVFLPNG 107 (131)
T ss_pred cccEEEEEecC-CCCcccceEEEEEeccccCCCCch-------hhceeecccCCCCcEE-E----ecCCcceEEEEEcCC
Confidence 46899999985 699999999999884433332321 1235668999999986 3 244579999966544
No 22
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=90.32 E-value=0.48 Score=36.98 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=27.2
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 217 QGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 217 ~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
.|+|++|+.|+|+..+. ...=.+++++.||.+|+..
T Consensus 7 ~~~P~~~~~V~L~e~d~-----------~~~Ddll~~~~Td~~G~F~ 42 (80)
T PF01060_consen 7 GGKPAKNVKVKLWEDDY-----------FDPDDLLDETKTDSDGNFE 42 (80)
T ss_pred CCccCCCCEEEEEECCC-----------CCCCceeEEEEECCCceEE
Confidence 69999999999986442 1123468999999999764
No 23
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=90.14 E-value=0.52 Score=42.91 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=36.5
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccC---CCCceEEEEEEeCCCCCcCC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD---VSGWVYQGSSTTNKDGRCGQ 264 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~---~~~~~~l~~~~Td~DGR~~~ 264 (327)
-|+-+|+|+ .|+|.+|..|++..-+...-=+...... +.+|..-+...||+|||..-
T Consensus 38 ~l~G~V~D~-~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F 97 (185)
T cd03463 38 TLEGRVYDG-DGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSF 97 (185)
T ss_pred EEEEEEECC-CCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEE
Confidence 367899997 5999999999996654321001111111 24555556789999999863
No 24
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=88.68 E-value=0.86 Score=40.64 Aligned_cols=62 Identities=26% Similarity=0.283 Sum_probs=43.7
Q ss_pred CCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEe
Q 020329 204 TRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFN 282 (327)
Q Consensus 204 ~~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 282 (327)
...+++.-|| ..|+|.+|..|.+...+.. ......-.+..||++|++.-.+ ..+|.|-|...
T Consensus 149 ~g~~~~~~vl--~~GkPl~~a~V~~~~~~~~----------~~~~~~~~~~~TD~~G~~~~~~-----~~~G~wli~a~ 210 (215)
T PF10670_consen 149 AGDPLPFQVL--FDGKPLAGAEVEAFSPGGW----------YDVEHEAKTLKTDANGRATFTL-----PRPGLWLIRAS 210 (215)
T ss_pred CCCEEEEEEE--ECCeEcccEEEEEEECCCc----------cccccceEEEEECCCCEEEEec-----CCCEEEEEEEE
Confidence 3457888888 9999999999999765421 0111114678999999997433 24899988653
No 25
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=88.22 E-value=1.1 Score=44.64 Aligned_cols=57 Identities=26% Similarity=0.292 Sum_probs=45.0
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 284 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 284 (327)
...|+-+|.|. +|.|.+|..|.+...+ ...+||.||+... .+.+|.|+|++...
T Consensus 295 ~~~i~G~V~d~-~g~pv~~A~V~v~~~~-------------------~~~~td~~G~y~~------~l~~G~Y~l~vs~~ 348 (372)
T cd03868 295 HIGVKGFVRDA-SGNPIEDATIMVAGID-------------------HNVTTAKFGDYWR------LLLPGTYTITAVAP 348 (372)
T ss_pred CCceEEEEEcC-CCCcCCCcEEEEEecc-------------------cceEeCCCceEEe------cCCCEEEEEEEEec
Confidence 46789999998 7999999999995321 1369999999841 25689999999887
Q ss_pred CCC
Q 020329 285 KYC 287 (327)
Q Consensus 285 ~Yf 287 (327)
.|=
T Consensus 349 Gf~ 351 (372)
T cd03868 349 GYE 351 (372)
T ss_pred CCC
Confidence 764
No 26
>PRK03094 hypothetical protein; Provisional
Probab=88.00 E-value=0.51 Score=37.52 Aligned_cols=24 Identities=38% Similarity=0.349 Sum_probs=22.0
Q ss_pred CeEEEEecCCCHHHHHHHHHHHhc
Q 020329 106 FIFIICASGRTAAEILAELKKRYT 129 (327)
Q Consensus 106 fpFVicv~G~s~~eIL~~le~RL~ 129 (327)
-.+||+|+|+|++||...+++||.
T Consensus 57 ~~pVI~A~G~TaeEI~~~ve~r~~ 80 (80)
T PRK03094 57 KGSVITASGLTADEICQQVESRLQ 80 (80)
T ss_pred CCcEEEcCCCCHHHHHHHHHHhhC
Confidence 368999999999999999999984
No 27
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=86.74 E-value=1 Score=41.12 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=39.4
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-------CCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeE
Q 020329 208 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-------DVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFY 277 (327)
Q Consensus 208 iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~-------~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y 277 (327)
|...|+|..+|+|.+|..|++..-+....=+.+... .+..+ +=+...||+||++.- ..+.||.|
T Consensus 29 l~g~V~D~~~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~f-lRG~~~TD~~G~~~F-----~TI~PG~Y 99 (188)
T cd03457 29 LDLQVVDVATCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETF-LRGVQPTDADGVVTF-----TTIFPGWY 99 (188)
T ss_pred EEEEEEeCCCCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCc-CEEEEEECCCccEEE-----EEECCCCC
Confidence 568999999999999999998654321100111100 12222 346679999999863 23456655
No 28
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=86.28 E-value=1.5 Score=43.92 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=44.9
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 284 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 284 (327)
...|.-+|.|. +|.|.+|..|++...+ .....+||.+|.. +. .+.||.|.|++.-.
T Consensus 294 ~~gI~G~V~D~-~g~pi~~A~V~v~g~~-----------------~~~~~~T~~~G~y--~~----~l~pG~Y~v~vsa~ 349 (376)
T cd03866 294 HLGVKGQVFDS-NGNPIPNAIVEVKGRK-----------------HICPYRTNVNGEY--FL----LLLPGKYMINVTAP 349 (376)
T ss_pred cCceEEEEECC-CCCccCCeEEEEEcCC-----------------ceeEEEECCCceE--EE----ecCCeeEEEEEEeC
Confidence 45689999997 6999999999995311 1234589999998 22 25699999999987
Q ss_pred CCC
Q 020329 285 KYC 287 (327)
Q Consensus 285 ~Yf 287 (327)
.|=
T Consensus 350 Gy~ 352 (376)
T cd03866 350 GFK 352 (376)
T ss_pred Ccc
Confidence 774
No 29
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.09 E-value=1.3 Score=41.68 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=57.1
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCC-CCccCC---CCceEEEEEEeCCCCCcCCcC--CCccCCC--------
Q 020329 208 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPL-FGETDV---SGWVYQGSSTTNKDGRCGQLM--GMIEDLN-------- 273 (327)
Q Consensus 208 iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~-~~~~~~---~~~~~l~~~~Td~DGR~~~~~--~~~~~~~-------- 273 (327)
|+-.|||+. |+|.+|..|++-.-+.. +.=. ..++.. .+|...+...||++||..-+. +..-...
T Consensus 75 l~G~VlD~~-G~Pv~~A~VEiWQAda~-GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~~~~~R~ 152 (226)
T COG3485 75 LEGRVLDGN-GRPVPDALVEIWQADAD-GRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNGGPMWRP 152 (226)
T ss_pred EEEEEECCC-CCCCCCCEEEEEEcCCC-CcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCCCCcCcc
Confidence 568899998 99999999999654431 1100 011111 246677899999999986432 1110111
Q ss_pred ---------CeeEEEEEeeCCCCC-CCCCceeEEEEEeec
Q 020329 274 ---------PGFYKITFNTGKYCP-EGFFPYVSIVFEIRE 303 (327)
Q Consensus 274 ---------~G~Y~l~F~tg~Yf~-~~F~p~V~V~F~v~~ 303 (327)
+| +..++.|-=||. ++-+..=+|.+.|++
T Consensus 153 aHih~~v~~~g-~~~~L~TqlYf~dd~~~~~dpi~~~v~~ 191 (226)
T COG3485 153 AHIHFSVFARG-INTRLVTQLYFPDDPANARDPILALVPD 191 (226)
T ss_pred ceeEEEEeCCc-ccceEEEEEecCCChhhccCchhcccCc
Confidence 11 134466677887 556677777888874
No 30
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=85.06 E-value=1.5 Score=43.63 Aligned_cols=56 Identities=30% Similarity=0.351 Sum_probs=43.7
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCC
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 285 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 285 (327)
..|+-+|.|. .|.|.+|..|.+... + ....||.||+..- .+.+|.|+|++.-..
T Consensus 298 ~~i~G~V~d~-~g~pl~~A~V~i~~~----------------~---~~~~Td~~G~f~~------~l~~G~y~l~vs~~G 351 (374)
T cd03858 298 RGIKGFVRDA-NGNPIANATISVEGI----------------N---HDVTTAEDGDYWR------LLLPGTYNVTASAPG 351 (374)
T ss_pred CceEEEEECC-CCCccCCeEEEEecc----------------e---eeeEECCCceEEE------ecCCEeEEEEEEEcC
Confidence 4799999998 699999999998321 1 2368999999962 134899999998777
Q ss_pred CC
Q 020329 286 YC 287 (327)
Q Consensus 286 Yf 287 (327)
|-
T Consensus 352 y~ 353 (374)
T cd03858 352 YE 353 (374)
T ss_pred cc
Confidence 64
No 31
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=84.95 E-value=1.7 Score=40.67 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=34.6
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCc----cCCCCceEEEEEEeCCCCCcC
Q 020329 208 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGE----TDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 208 iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~----~~~~~~~~l~~~~Td~DGR~~ 263 (327)
|+.+|+|. .|+|.+|..|++..-+...-=+...+ ..+.++..-+...||+|||..
T Consensus 63 l~G~V~D~-~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~ 121 (220)
T TIGR02422 63 VHGRVLDE-DGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYR 121 (220)
T ss_pred EEEEEECC-CCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEE
Confidence 45789997 59999999999976543210000000 012334446778999999975
No 32
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=84.10 E-value=2 Score=38.07 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=35.1
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc----CCCCceEEEEEEeCCCCCcCC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET----DVSGWVYQGSSTTNKDGRCGQ 264 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~----~~~~~~~l~~~~Td~DGR~~~ 264 (327)
.|+..|+| ..|+|.+|..|++..-+....=+..... .+.+...-+...||+|||..-
T Consensus 17 ~l~g~V~D-~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f 77 (158)
T cd03459 17 ILEGRVLD-GDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRF 77 (158)
T ss_pred EEEEEEEC-CCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEE
Confidence 46788999 5899999999999664432100000000 112333346789999999863
No 33
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=84.03 E-value=2 Score=40.24 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=34.4
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCc----cCCCCceEEEEEEeCCCCCcC
Q 020329 208 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGE----TDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 208 iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~----~~~~~~~~l~~~~Td~DGR~~ 263 (327)
|+.+|+|. .|+|.+|..|++..-+...-=+...+ ....++..-+...||+|||..
T Consensus 68 l~G~V~D~-~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~ 126 (220)
T cd03464 68 VHGRVLDE-DGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYR 126 (220)
T ss_pred EEEEEECC-CCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEE
Confidence 45789995 89999999999976543210000000 012234445678999999975
No 34
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=83.69 E-value=1.5 Score=39.75 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=35.6
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-CCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEE
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-DVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 278 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~-~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~ 278 (327)
-|...|+|+ .|+|.+|..|++..-+....=+..... ....+..-+...||+|||..- ..+.||.|.
T Consensus 31 ~l~G~V~D~-~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f-----~Ti~Pg~Y~ 97 (183)
T PF00775_consen 31 VLHGRVIDT-DGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSF-----RTIKPGPYP 97 (183)
T ss_dssp EEEEEEEET-TSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEE-----EEE----EE
T ss_pred EEEEEEECC-CCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEE-----EeeCCCCCC
Confidence 367899996 699999999999765532110111111 112233447889999998852 134455554
No 35
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=82.79 E-value=2.6 Score=42.29 Aligned_cols=58 Identities=28% Similarity=0.334 Sum_probs=45.5
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 284 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 284 (327)
...|.-.|.|..+|.|..|..|.+...+ ...+||.||...- .+.||.|.|++.--
T Consensus 296 ~~gI~G~V~D~~~g~pl~~AtV~V~g~~-------------------~~~~Td~~G~f~~------~l~pG~ytl~vs~~ 350 (375)
T cd03863 296 HRGVRGFVLDATDGRGILNATISVADIN-------------------HPVTTYKDGDYWR------LLVPGTYKVTASAR 350 (375)
T ss_pred cCeEEEEEEeCCCCCCCCCeEEEEecCc-------------------CceEECCCccEEE------ccCCeeEEEEEEEc
Confidence 4578999999999999999999985321 1268999998852 25689999999877
Q ss_pred CCC
Q 020329 285 KYC 287 (327)
Q Consensus 285 ~Yf 287 (327)
.|=
T Consensus 351 GY~ 353 (375)
T cd03863 351 GYD 353 (375)
T ss_pred Ccc
Confidence 664
No 36
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=82.54 E-value=2 Score=34.77 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=38.1
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEE---EEEeCCCCCcCCcCCCccCCCCeeEEEEEe
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQG---SSTTNKDGRCGQLMGMIEDLNPGFYKITFN 282 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~---~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 282 (327)
..|+..|.| ..|.|.+|+.|.+..... .-.+.. ...||++|...--+. .-.+|.|.++..
T Consensus 25 ~tltatV~D-~~gnpv~g~~V~f~~~~~-------------~~~l~~~~~~~~Td~~G~a~~tlt---st~aG~~~VtA~ 87 (100)
T PF02369_consen 25 NTLTATVTD-ANGNPVPGQPVTFSSSSS-------------GGTLSPTNTSATTDSNGIATVTLT---STKAGTYTVTAT 87 (100)
T ss_dssp EEEEEEEEE-TTSEB-TS-EEEE--EES-------------SSEES-CEE-EEE-TTSEEEEEEE----SS-EEEEEEEE
T ss_pred EEEEEEEEc-CCCCCCCCCEEEEEEcCC-------------CcEEecCccccEECCCEEEEEEEE---ecCceEEEEEEE
Confidence 578999999 569999999999922111 111111 479999999874332 336899999876
Q ss_pred eC
Q 020329 283 TG 284 (327)
Q Consensus 283 tg 284 (327)
+.
T Consensus 88 ~~ 89 (100)
T PF02369_consen 88 VD 89 (100)
T ss_dssp ET
T ss_pred EC
Confidence 54
No 37
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=82.40 E-value=4.2 Score=39.35 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=35.3
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
-|+..|+|+ .|+|.+|..|++..-+....=+... .....+..-+...||+|||..
T Consensus 122 ~v~G~V~D~-~G~Pv~gA~VeiWqad~~G~Y~~~~-~~~~~~~lRGr~~Td~~G~y~ 176 (277)
T cd03461 122 FVHGRVTDT-DGKPLPGATVDVWQADPNGLYDVQD-PDQPEFNLRGKFRTDEDGRYA 176 (277)
T ss_pred EEEEEEEcC-CCCCcCCcEEEEECcCCCCCcCCCC-CCCCCCCCeEEEEeCCCCCEE
Confidence 467899996 5999999999986544311000000 011344556788999999964
No 38
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=81.09 E-value=3 Score=36.19 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=40.6
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc-CCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEE
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET-DVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYK 278 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~-~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~ 278 (327)
.|+..|+|. .|+|.+|..|++..-+...-=+..... ....+..-+...||+||+..- ..+.||.|.
T Consensus 13 ~l~G~V~D~-~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f-----~ti~Pg~Y~ 79 (146)
T cd00421 13 TLTGTVLDG-DGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRF-----RTIKPGPYP 79 (146)
T ss_pred EEEEEEECC-CCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEE-----EEEcCCCCC
Confidence 467899998 688999999988654431000000000 022334567789999999863 245577776
No 39
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=80.99 E-value=3 Score=38.23 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=34.5
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCcc----CCCCceEEEEEEeCCCCCcC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGET----DVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~----~~~~~~~l~~~~Td~DGR~~ 263 (327)
-|+-+|+|. .|+|.+|..|++..-+...-=+..... .+.....-+...||+||+..
T Consensus 41 ~l~G~V~D~-~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~ 100 (193)
T TIGR02423 41 RLEGRVLDG-DGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFT 100 (193)
T ss_pred EEEEEEECC-CCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEE
Confidence 367899997 699999999999664431100000000 11233344667899999975
No 40
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=80.76 E-value=2.5 Score=40.48 Aligned_cols=55 Identities=24% Similarity=0.227 Sum_probs=36.2
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
-|+..|+|+ .|+|.+|..|++..-+...-=+.... ....+..-+...||+|||..
T Consensus 106 ~l~G~V~D~-~G~Pv~~A~VeiWqad~~G~Y~~~~~-~~~~~~lRG~~~Td~~G~y~ 160 (256)
T cd03458 106 FVHGTVTDT-DGKPLAGATVDVWHADPDGFYSQQDP-DQPEFNLRGKFRTDEDGRYR 160 (256)
T ss_pred EEEEEEEcC-CCCCCCCcEEEEEccCCCCCcCCCCC-CCCCCCCEEEEEeCCCCCEE
Confidence 467999997 69999999999966443210011111 12345556788999999964
No 41
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=80.36 E-value=2.7 Score=40.81 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=35.2
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
-|+..|+|+ .|+|.+|..|++..-+....-+.+. .....+..=+...||+|||..
T Consensus 134 ~v~G~V~D~-~G~Pv~gA~VdiWqada~G~Ys~~~-~~~~~~~lRGr~~TDadG~y~ 188 (281)
T TIGR02438 134 VFSGQVTDL-DGNGLAGAKVELWHADDDGFYSQFA-PGIPEWNLRGTIIADDEGRFE 188 (281)
T ss_pred EEEEEEEcC-CCCCcCCCEEEEEecCCCCCcCCCC-CCCCCCCCeEEEEeCCCCCEE
Confidence 467899996 5999999999996544321000110 011233345788999999975
No 42
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=79.87 E-value=2.6 Score=40.91 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=35.6
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
-|+..|+|+ .|+|.+|..|++..-+....=+.+. .....+..-+...||+|||..
T Consensus 130 ~v~G~V~D~-~G~PI~gA~VeIWqad~~G~Ys~~~-~~~~~~~lRG~~~TD~~G~y~ 184 (285)
T TIGR02439 130 FLHGQVTDA-DGKPIAGAKVELWHANTKGNYSHFD-KSQSEFNLRRTIITDAEGRYR 184 (285)
T ss_pred EEEEEEECC-CCCCcCCcEEEEEccCCCCCcCCCC-CCCCCCCceEEEEECCCCCEE
Confidence 357899996 5999999999996644321001111 112334455788999999965
No 43
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=79.74 E-value=2.4 Score=41.12 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=35.4
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
-|+..|+|+ .|+|.+|..|++..-+....=+.+.. ....+..-+...||+|||..
T Consensus 126 ~l~G~V~D~-~G~PI~~A~VeiWqad~~G~Ys~~~~-~~~~f~~RGr~~TD~~G~y~ 180 (282)
T cd03460 126 VMHGTVTDT-DGKPVPGAKVEVWHANSKGFYSHFDP-TQSPFNLRRSIITDADGRYR 180 (282)
T ss_pred EEEEEEECC-CCCCcCCcEEEEECCCCCCCcCCCCC-CCCCCCCceEEEeCCCCCEE
Confidence 357899997 69999999999966443210011111 11334455778999999964
No 44
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=79.72 E-value=5.9 Score=34.46 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=45.0
Q ss_pred eccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCCC
Q 020329 212 VLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 287 (327)
Q Consensus 212 VLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf 287 (327)
||=--.|+|.+|..|.|...... .+-=-...++..|+++|+-.- .+.||.|++...+..|.
T Consensus 8 vL~dg~G~pv~g~~I~L~A~~tS---------~~Vv~~t~as~~t~~~G~Ys~------~~epG~Y~V~l~~~g~~ 68 (134)
T PF08400_consen 8 VLKDGAGKPVPGCTITLKARRTS---------STVVVGTVASVVTGEAGEYSF------DVEPGVYRVTLKVEGRP 68 (134)
T ss_pred EEeCCCCCcCCCCEEEEEEccCc---------hheEEEEEEEEEcCCCceEEE------EecCCeEEEEEEECCCC
Confidence 44455799999999999776532 011124578889999997741 46799999999998885
No 45
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=77.86 E-value=2.6 Score=31.09 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=37.3
Q ss_pred CCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEee--CCCCCCCCCceeEEEE
Q 020329 222 AGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT--GKYCPEGFFPYVSIVF 299 (327)
Q Consensus 222 ~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t--g~Yf~~~F~p~V~V~F 299 (327)
+|+.++|+..+. .-....+..||+||.+.- ..+.+|.|+|+.-. ..|- ...-...|
T Consensus 2 ~Ga~f~L~~~~~-------------~~~~~~~~~Td~~G~~~f-----~~L~~G~Y~l~E~~aP~GY~----~~~~~~~~ 59 (70)
T PF05738_consen 2 AGATFELYDEDG-------------NEVIEVTVTTDENGKYTF-----KNLPPGTYTLKETKAPDGYQ----LDDTPYEF 59 (70)
T ss_dssp STEEEEEEETTS-------------EEEEEEEEEGGTTSEEEE-----EEEESEEEEEEEEETTTTEE----EEECEEEE
T ss_pred CCeEEEEEECCC-------------CEEEEEEEEECCCCEEEE-----eecCCeEEEEEEEECCCCCE----ECCCceEE
Confidence 689999986432 111111589999998752 35679999999966 3332 22334456
Q ss_pred Eeec
Q 020329 300 EIRE 303 (327)
Q Consensus 300 ~v~~ 303 (327)
.|..
T Consensus 60 ~i~~ 63 (70)
T PF05738_consen 60 TITE 63 (70)
T ss_dssp EECT
T ss_pred EEec
Confidence 6654
No 46
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=77.58 E-value=4.1 Score=38.77 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=34.8
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
-|+..|+| ..|+|.+|..|++..-+....=+.+..+ ...+..=+...||+|||..
T Consensus 100 ~v~G~V~D-~~G~Pv~~A~VeiWqad~~G~Y~~~~~~-~~~~~lRG~~~Td~~G~y~ 154 (246)
T TIGR02465 100 LIRGTVRD-LSGTPVAGAVIDVWHSTPDGKYSGFHDN-IPDDYYRGKLVTAADGSYE 154 (246)
T ss_pred EEEEEEEc-CCCCCcCCcEEEEECCCCCCCCCCCCCC-CCCCCCeEEEEECCCCCEE
Confidence 46789999 5899999999999664432100011111 1223334778999999975
No 47
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=77.57 E-value=2.6 Score=33.54 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=21.2
Q ss_pred eEEEEecCCCHHHHHHHHHHHhc
Q 020329 107 IFIICASGRTAAEILAELKKRYT 129 (327)
Q Consensus 107 pFVicv~G~s~~eIL~~le~RL~ 129 (327)
..||=|.|+|.+||...+++||+
T Consensus 58 ~pVInA~G~T~eEI~~~v~~rl~ 80 (80)
T PF03698_consen 58 VPVINASGLTAEEIVQEVEERLQ 80 (80)
T ss_pred ceEEecCCCCHHHHHHHHHHhhC
Confidence 37999999999999999999985
No 48
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=75.56 E-value=4.6 Score=40.70 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=43.8
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 284 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 284 (327)
...|+-+|+|. .|.|..|..|.+.... ....||.+|.... .+.+|.|.|++.--
T Consensus 317 ~~~i~G~V~D~-~g~pi~~A~V~v~g~~-------------------~~~~Td~~G~y~~------~l~~G~y~l~vs~~ 370 (395)
T cd03867 317 HRGIKGFVKDK-DGNPIKGARISVRGIR-------------------HDITTAEDGDYWR------LLPPGIHIVSAQAP 370 (395)
T ss_pred cceeEEEEEcC-CCCccCCeEEEEeccc-------------------cceEECCCceEEE------ecCCCcEEEEEEec
Confidence 45689999996 5999999999985321 2368999998842 24589999999877
Q ss_pred CCC
Q 020329 285 KYC 287 (327)
Q Consensus 285 ~Yf 287 (327)
.|-
T Consensus 371 Gy~ 373 (395)
T cd03867 371 GYT 373 (395)
T ss_pred Cee
Confidence 764
No 49
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=74.94 E-value=6 Score=40.01 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=42.6
Q ss_pred CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCC
Q 020329 206 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK 285 (327)
Q Consensus 206 ~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~ 285 (327)
..|+-+|.|. .|.|..|..|.+...+ ...+||.+|.. |. .+.||.|+|++.--.
T Consensus 316 ~gI~G~V~D~-~g~pi~~A~V~v~g~~-------------------~~~~T~~~G~y--~r----~l~pG~Y~l~vs~~G 369 (392)
T cd03864 316 QGIKGMVTDE-NNNGIANAVISVSGIS-------------------HDVTSGTLGDY--FR----LLLPGTYTVTASAPG 369 (392)
T ss_pred CeEEEEEECC-CCCccCCeEEEEECCc-------------------cceEECCCCcE--Ee----cCCCeeEEEEEEEcC
Confidence 4688899996 5999999999984322 12689999977 32 356899999988776
Q ss_pred CC
Q 020329 286 YC 287 (327)
Q Consensus 286 Yf 287 (327)
|-
T Consensus 370 y~ 371 (392)
T cd03864 370 YQ 371 (392)
T ss_pred ce
Confidence 64
No 50
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=74.89 E-value=7.6 Score=30.64 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=48.8
Q ss_pred ccCCCCCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCee
Q 020329 197 ISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGF 276 (327)
Q Consensus 197 ~~~~~~~~~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~ 276 (327)
+.+.+.+ ...|+..|+|- .|.|.+|..|++.--... ...+. -....||.+||+.-.+. .-.+|.
T Consensus 12 ~~Adg~d-~~~i~v~v~D~-~Gnpv~~~~V~f~~~~~~--~~~~~---------~~~~~Td~~G~a~~~l~---~~~~G~ 75 (92)
T smart00634 12 AVANGSD-AITLTATVTDA-NGNPVAGQEVTFTTPSGG--ALTLS---------KGTATTDANGIATVTLT---STTAGV 75 (92)
T ss_pred EEEcCcc-cEEEEEEEECC-CCCCcCCCEEEEEECCCc--eeecc---------CCeeeeCCCCEEEEEEE---CCCCcE
Confidence 3444333 46799999996 699999999888643210 00000 13458999999986553 336899
Q ss_pred EEEEEeeCCC
Q 020329 277 YKITFNTGKY 286 (327)
Q Consensus 277 Y~l~F~tg~Y 286 (327)
|.++.....+
T Consensus 76 ~~vta~~~~~ 85 (92)
T smart00634 76 YTVTASLENG 85 (92)
T ss_pred EEEEEEECCC
Confidence 9998876654
No 51
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=74.49 E-value=3 Score=29.96 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.6
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEec
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWK 232 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~ 232 (327)
+|+.||.|. .|.|.++..+.|.+-.
T Consensus 16 ~ltVt~kda-~G~pv~n~~f~l~r~~ 40 (47)
T PF05688_consen 16 PLTVTVKDA-NGNPVPNAPFTLTRGD 40 (47)
T ss_pred EEEEEEECC-CCCCcCCceEEEEecC
Confidence 589999999 9999999999998743
No 52
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=72.87 E-value=6 Score=37.70 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=34.8
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCG 263 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~ 263 (327)
-|+..|+|. .|+|.+|..|++..-+....=+.+.. ....+..=+...||+|||..
T Consensus 101 ~l~G~V~D~-~G~Pv~~A~VeiWqad~~G~Y~~~~~-~~~~~~~RG~~~Td~~G~y~ 155 (247)
T cd03462 101 LFRGTVKDL-AGAPVAGAVIDVWHSTPDGKYSGFHP-NIPEDYYRGKIRTDEDGRYE 155 (247)
T ss_pred EEEEEEEcC-CCCCcCCcEEEEECCCCCCCcCCCCC-CCCCCCCEEEEEeCCCCCEE
Confidence 467899996 79999999999966443110000000 11233344577999999975
No 53
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=72.69 E-value=5.4 Score=39.84 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=44.0
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 284 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 284 (327)
...|+-+|.|. +|.|..|..|.+... . ..+||.+|...-. +.||.|+|++.-.
T Consensus 286 ~~gI~G~V~d~-~g~pi~~A~V~v~g~---------------~-----~~~T~~~G~y~~~------L~pG~y~v~vs~~ 338 (363)
T cd06245 286 HKGVHGVVTDK-AGKPISGATIVLNGG---------------H-----RVYTKEGGYFHVL------LAPGQHNINVIAE 338 (363)
T ss_pred CcEEEEEEEcC-CCCCccceEEEEeCC---------------C-----ceEeCCCcEEEEe------cCCceEEEEEEEe
Confidence 34689999997 799999999998421 1 3579999977522 4589999999888
Q ss_pred CCCC
Q 020329 285 KYCP 288 (327)
Q Consensus 285 ~Yf~ 288 (327)
.|-.
T Consensus 339 Gy~~ 342 (363)
T cd06245 339 GYQQ 342 (363)
T ss_pred Ccee
Confidence 7763
No 54
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=70.22 E-value=19 Score=30.39 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=42.7
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEE
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITF 281 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F 281 (327)
...++.++.| ..|.|..+..++|...... +.....-..-...++|+....+ ..+.+|.|.|+.
T Consensus 68 ~~~~~i~~~d-~~g~~~~~~~~~l~l~rp~----------~~~~D~~~~l~~~~~g~y~~~~---~~~~~G~W~l~l 130 (146)
T PF05751_consen 68 DNSLTIRLTD-PNGAPVSGAKLTLSLYRPT----------DAKLDFTLTLTESAPGVYRAPV---PLLKKGRWYLRL 130 (146)
T ss_pred CCeEEEEEEc-CCCCcCcCceEEEEEECCC----------CccCCeeEEeeECCCceEEEEc---CCCCCccEEEEE
Confidence 3679999999 9999999999888665431 1111122223367888776544 234789999988
No 55
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=68.94 E-value=8.8 Score=31.16 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCcCCcCCCccCCCCeeEEEEEee
Q 020329 251 QGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 283 (327)
Q Consensus 251 l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 283 (327)
..-+.||.||+..- +.+.||.|+|.-..
T Consensus 41 qYwt~td~~G~Fti-----~~V~pGtY~L~ay~ 68 (95)
T PF14686_consen 41 QYWTRTDSDGNFTI-----PNVRPGTYRLYAYA 68 (95)
T ss_dssp EEEEE--TTSEEE--------B-SEEEEEEEEE
T ss_pred cEEEEeCCCCcEEe-----CCeeCcEeEEEEEE
Confidence 34478999999862 46789999999988
No 56
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=65.48 E-value=8.6 Score=35.99 Aligned_cols=64 Identities=27% Similarity=0.397 Sum_probs=39.7
Q ss_pred CCCceeeeccCCCCCCCC----CCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEE
Q 020329 205 RLPITTHVLDVSQGSPAA----GVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKIT 280 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~----gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~ 280 (327)
.+.|+-+|+|..+|.|.. |++++|+..+= . .+. --.-....||-..+ ..+=.|.|+|+
T Consensus 21 ~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy-------~-----~~~-~~~~~v~qDGtf~n-----~~lF~G~Yki~ 82 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEPIQTDIGGVRIQLYELGY-------G-----DNT-PQDVYVKQDGTFRN-----TKLFDGDYKIV 82 (222)
T ss_dssp -EEEEEEEEECCTTEE----STSSEEEEECS-C-------C-----G---SEEEEB-TTSEEEE-----EEE-SEEEEEE
T ss_pred CceEEEEEEEeecCCeeeecCCceEEEEEeccc-------c-----cCC-CcceEEccCCceee-----eeEeccceEEE
Confidence 456999999999998754 89998876431 1 111 12246788886632 12347999999
Q ss_pred EeeCCC
Q 020329 281 FNTGKY 286 (327)
Q Consensus 281 F~tg~Y 286 (327)
+.-|.+
T Consensus 83 ~~~G~f 88 (222)
T PF12866_consen 83 PKNGNF 88 (222)
T ss_dssp E-CTSC
T ss_pred EcCCCC
Confidence 988887
No 57
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=64.46 E-value=14 Score=34.34 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=39.4
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhc--CCeEEEEecCCCHHHHHHHHHHHhcCChHH
Q 020329 81 ALATANESSSQELSDWNNRYRLRF--GFIFIICASGRTAAEILAELKKRYTNRPII 134 (327)
Q Consensus 81 al~~~~~~~~~~L~~LN~~YeekF--GfpFVicv~G~s~~eIL~~le~RL~N~~e~ 134 (327)
+.+-+=.++.+.| +.|.+++ |.|||++-..-...-++..|++++..++-.
T Consensus 72 a~~~ay~DV~~AF----~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 72 AFDLAYSDVRAAF----DYYLANYNNGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred HHHhhHHHHHHHH----HHHHHhcCCCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 3333455666777 7899999 999999988888889999999999988743
No 58
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=61.16 E-value=47 Score=26.00 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=35.3
Q ss_pred cCCC-CCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEE-EeCCCCCcCCcCCCccCCCCeeEEEEEeeC
Q 020329 214 DVSQ-GSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSS-TTNKDGRCGQLMGMIEDLNPGFYKITFNTG 284 (327)
Q Consensus 214 Dt~~-G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~-~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 284 (327)
|... ..|..+..|.+...+.. +.-..-... .+|.+|.+..-+...+....|.|+|+..++
T Consensus 25 ~~~~~~~~~~~~~~~v~i~dp~-----------g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 25 DLDNDFKPPANSPVTVTIKDPS-----------GNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EECTTCSCESSEEEEEEEEETT-----------SEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred ccccccccccCCceEEEEECCC-----------CCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 5552 56777888888766531 121122333 568999887534334566789999999985
No 59
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=60.50 E-value=16 Score=37.19 Aligned_cols=55 Identities=33% Similarity=0.447 Sum_probs=42.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 286 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 286 (327)
.|+-+|.|. .|.|.+|..|.+...+. ..+||.+|-..- .+.||.|+|+.....|
T Consensus 327 gI~G~V~D~-~g~pI~~AtV~V~g~~~-------------------~~~T~~~G~Y~~------~L~pG~Ytv~vsa~Gy 380 (402)
T cd03865 327 GVKGFVKDL-QGNPIANATISVEGIDH-------------------DITSAKDGDYWR------LLAPGNYKLTASAPGY 380 (402)
T ss_pred ceEEEEECC-CCCcCCCeEEEEEcCcc-------------------ccEECCCeeEEE------CCCCEEEEEEEEecCc
Confidence 499999996 69999999999864221 147999997752 3568999999988887
Q ss_pred C
Q 020329 287 C 287 (327)
Q Consensus 287 f 287 (327)
-
T Consensus 381 ~ 381 (402)
T cd03865 381 L 381 (402)
T ss_pred c
Confidence 6
No 60
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=57.64 E-value=28 Score=28.03 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=40.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEee
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 283 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 283 (327)
-|+--|+ ..|.|.+|=-|+|- + ++-+..++..|.+.|...-+. .||.|+++--+
T Consensus 9 VItG~V~--~~G~Pv~gAyVRLL--D-------------~sgEFtaEvvts~~G~FRFfa------apG~WtvRal~ 62 (85)
T PF07210_consen 9 VITGRVT--RDGEPVGGAYVRLL--D-------------SSGEFTAEVVTSATGDFRFFA------APGSWTVRALS 62 (85)
T ss_pred EEEEEEe--cCCcCCCCeEEEEE--c-------------CCCCeEEEEEecCCccEEEEe------CCCceEEEEEc
Confidence 3666677 89999999999994 2 233458899999999987433 37999987644
No 61
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=50.76 E-value=8.4 Score=28.70 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCHHHHHHhhC-CHHHHHHHHhcC----CCCCHHHHH
Q 020329 7 VLDEEELLGCCG-STKFAKEMASAS----PFASLNQAV 39 (327)
Q Consensus 7 ~m~~~~f~~~~~-spw~Ae~~~~~R----PF~s~~~L~ 39 (327)
+.+.+++....| ++..|+++...| ||.|+++|.
T Consensus 10 ~as~~eL~~lpgi~~~~A~~Iv~~R~~~G~f~s~~dL~ 47 (65)
T PF12836_consen 10 TASAEELQALPGIGPKQAKAIVEYREKNGPFKSLEDLK 47 (65)
T ss_dssp TS-HHHHHTSTT--HHHHHHHHHHHHHH-S-SSGGGGG
T ss_pred cCCHHHHHHcCCCCHHHHHHHHHHHHhCcCCCCHHHHh
Confidence 468888888878 899999999999 999999997
No 62
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=49.89 E-value=26 Score=30.47 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCCHHHHHHhhC-CHHHHHHHHhcCCCCCHHHHHH
Q 020329 7 VLDEEELLGCCG-STKFAKEMASASPFASLNQAVS 40 (327)
Q Consensus 7 ~m~~~~f~~~~~-spw~Ae~~~~~RPF~s~~~L~~ 40 (327)
+++.++|..+-| -|..|+++....||.|+++|.+
T Consensus 57 ~A~~~el~~lpGigP~~A~~IV~nGpf~sveDL~~ 91 (132)
T PRK02515 57 NSSVRAFRQFPGMYPTLAGKIVKNAPYDSVEDVLN 91 (132)
T ss_pred ccCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHc
Confidence 478888888778 7999999999999999999973
No 63
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=49.44 E-value=24 Score=36.74 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=52.4
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTG 284 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg 284 (327)
...|.-=|.| .+|+|.+|..|++..++- ..+|..+|-- | .=+.||.|.|++...
T Consensus 377 H~GIkG~V~D-~~G~~I~NA~IsV~ginH-------------------dv~T~~~GDY--W----RLL~PG~y~vta~A~ 430 (500)
T KOG2649|consen 377 HRGIKGLVFD-DTGNPIANATISVDGINH-------------------DVTTAKEGDY--W----RLLPPGKYIITASAE 430 (500)
T ss_pred HhccceeEEc-CCCCccCceEEEEecCcC-------------------ceeecCCCce--E----EeeCCcceEEEEecC
Confidence 3456777999 999999999999965441 2467777733 2 124589999999999
Q ss_pred CCCC------CCCCceeEEEEEeecC
Q 020329 285 KYCP------EGFFPYVSIVFEIRES 304 (327)
Q Consensus 285 ~Yf~------~~F~p~V~V~F~v~~~ 304 (327)
.|-. -++-....|.|.+...
T Consensus 431 Gy~~~tk~v~V~~~~a~~~df~L~~~ 456 (500)
T KOG2649|consen 431 GYDPVTKTVTVPPDRAARVNFTLQRS 456 (500)
T ss_pred CCcceeeEEEeCCCCccceeEEEecC
Confidence 9986 1234555667777653
No 64
>PF13446 RPT: A repeated domain in UCH-protein
Probab=46.17 E-value=45 Score=24.37 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=33.0
Q ss_pred cCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 020329 113 SGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKL 154 (327)
Q Consensus 113 ~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l 154 (327)
...+-+.|+...+.++.++| .....+.+-+..||..|=.+.
T Consensus 15 ~~~~Dd~Ii~~f~~~~~~~P-~~~~~~r~AL~~Ia~~R~S~~ 55 (62)
T PF13446_consen 15 EDTDDDFIISAFQSKVNDDP-SQKDTLREALRVIAESRNSDR 55 (62)
T ss_pred CCCCHHHHHHHHHHHHHcCh-HhHHHHHHHHHHHHHHcCCHH
Confidence 45577999999999999988 577778888889998874433
No 65
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=43.73 E-value=57 Score=39.00 Aligned_cols=45 Identities=27% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCC
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQ 264 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~ 264 (327)
...+..+|--..+|+|.+|++|.+...+ .+.+.+++||+||++..
T Consensus 304 ~~~l~v~v~sl~sg~P~~g~~v~~~~~n---------------gevl~~~~tds~G~~~~ 348 (1621)
T COG2373 304 HDGLDVFVQSLSSGKPVPGVEVSVLAGN---------------GEVLVSGTTDSQGHAKF 348 (1621)
T ss_pred cccEEEEEEeccCCCCCCCcEEEEEecC---------------CcEEeeeEEccccceec
Confidence 4457889999999999999999986432 34689999999998864
No 66
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=42.38 E-value=1.1e+02 Score=28.85 Aligned_cols=53 Identities=11% Similarity=0.005 Sum_probs=38.6
Q ss_pred HHHHHHhcCCeEEEEecCC------CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 020329 97 NNRYRLRFGFIFIICASGR------TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRL 151 (327)
Q Consensus 97 N~~YeekFGfpFVicv~G~------s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL 151 (327)
|-.-.+||+|||||+..-. +..+|.+..+ +=.=...|...+|.+..+|..-||
T Consensus 158 ~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~--~iGme~~ea~~~Ls~~p~~i~~~~ 216 (216)
T PRK03892 158 AWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGI--NIGMEIPQAKASLSFYPRIILKRL 216 (216)
T ss_pred HHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHH--HhCCCHHHHHHHHHHhHHHHhhcC
Confidence 6677899999999999854 4466655443 223356788899999988877664
No 67
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=41.79 E-value=19 Score=34.20 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCC-------hHHHHHHHHH
Q 020329 86 NESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNR-------PIIEFEIAAQ 141 (327)
Q Consensus 86 ~~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~eIL~~le~RL~N~-------~e~E~~~Al~ 141 (327)
.-+.+..+..+-..=+.|=|||=+|++.|++.++|.+.++.=+... -+.|+.+++.
T Consensus 28 ~~~~~~~~~k~D~~R~~RtG~pEvv~a~gKt~eqi~~i~~~~~~~~~~~l~tR~~~e~~~~l~ 90 (254)
T COG1691 28 AFESLGEFAKLDIHREKRTGFPEVVFAPGKTPEQIVEIVEVLLEKNGIALATRVSPELLEALK 90 (254)
T ss_pred hhhhhchhhhccchhhccCCCceEeecCCCCHHHHHHHHHHHHHcCCeeeeecCCHHHHHHhh
Confidence 3444555555555556677999999999999999999988877654 3666666663
No 68
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=40.57 E-value=57 Score=23.14 Aligned_cols=31 Identities=32% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCHHHHHHHH-----HHHHHHHHhcCCeEEEEecCC
Q 020329 85 ANESSSQELS-----DWNNRYRLRFGFIFIICASGR 115 (327)
Q Consensus 85 ~~~~~~~~L~-----~LN~~YeekFGfpFVicv~G~ 115 (327)
+|++|+.+|. ....+--.+-|+||++.+.|+
T Consensus 3 LT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~~~~G~ 38 (47)
T PF13986_consen 3 LTDEELQELTGYKRPSKQIRWLRRNGIPFVVRADGR 38 (47)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCeeEECCCCC
Confidence 4666666653 334555667899999999997
No 69
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=40.34 E-value=32 Score=29.57 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCCCceEEEE--EEeCCCCCcCCc-----------CCCccCC--------------CCeeEEEEEeeCCCCC
Q 020329 244 DVSGWVYQGS--STTNKDGRCGQL-----------MGMIEDL--------------NPGFYKITFNTGKYCP 288 (327)
Q Consensus 244 ~~~~~~~l~~--~~Td~DGR~~~~-----------~~~~~~~--------------~~G~Y~l~F~tg~Yf~ 288 (327)
.+..|++++. .+||+|||+... +.+++++ -.|.|.+.=+-|.=|.
T Consensus 40 g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~M~GhY~M~~e~G~~F~ 111 (126)
T COG2967 40 GEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGTMQGHYEMIDEDGETFD 111 (126)
T ss_pred CCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcceEEEEEEEecCCCcEEE
Confidence 3456666655 599999999763 2223322 1377888888777775
No 70
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.46 E-value=2.7e+02 Score=24.30 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=65.7
Q ss_pred cCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCCC------------CcccHHHhhHhhcCCCHHHHHHHHHH
Q 020329 29 ASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPS------------SQWSKAEQSTALATANESSSQELSDW 96 (327)
Q Consensus 29 ~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~l------------s~~S~~EQa~al~~~~~~~~~~L~~L 96 (327)
.||| |+.++.+.+...+ ...-...-|+-|...-.|-.+.. ......|+-..++.--.+-.+++..|
T Consensus 14 NRPy-s~~di~~nL~~~~-~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l 91 (169)
T PF07106_consen 14 NRPY-SAQDIFDNLHNKV-GKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAEL 91 (169)
T ss_pred CCCC-cHHHHHHHHHhhc-cHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 6999 6677777777653 44445556777777777776651 11112222222211112222334444
Q ss_pred HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 020329 97 NNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSAKAKA 161 (327)
Q Consensus 97 N~~YeekFGfpFVicv~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~~~~~~~ 161 (327)
...+.. ...=|..|...+.|+.-.+....+.+-.+.-..||..|-+...++
T Consensus 92 ~~~~k~--------------l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~v 142 (169)
T PF07106_consen 92 KKEVKS--------------LEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPV 142 (169)
T ss_pred HHHHHH--------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 444432 344556666666665555555666666777788999988865554
No 71
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.41 E-value=70 Score=30.22 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCCCCCCCCceeEEEEEeec
Q 020329 245 VSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRE 303 (327)
Q Consensus 245 ~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf~~~F~p~V~V~F~v~~ 303 (327)
.+.-..+-+.+||+-|-+.. ...+.+|+|.++|....| +.|.-.|.|+|
T Consensus 251 kGaDVpVTsVITnssG~~vT----NgqLsaGtYtVTySAsGY------~DVTqtlvVTD 299 (301)
T PF06488_consen 251 KGADVPVTSVITNSSGNVVT----NGQLSAGTYTVTYSASGY------ADVTQTLVVTD 299 (301)
T ss_pred CCCcceeEEEEEcCCCcEee----cCcccCceEEEEEecccc------ccccceEEEec
Confidence 34556778889999997642 357899999999988776 34555555554
No 72
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=33.45 E-value=38 Score=24.62 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCcccHHHhhHhhcCCCHHHHHHHHHHHHHHHHh
Q 020329 70 SSQWSKAEQSTALATANESSSQELSDWNNRYRLR 103 (327)
Q Consensus 70 ls~~S~~EQa~al~~~~~~~~~~L~~LN~~Yeek 103 (327)
+..+|..|=..-+..++++--++|.+|+++|..|
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Eieelr~RY~~K 38 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEIEELRQRYQAK 38 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 3456777722223357888889999999999988
No 73
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=33.29 E-value=88 Score=31.96 Aligned_cols=56 Identities=29% Similarity=0.363 Sum_probs=39.9
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 286 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 286 (327)
.|--=|.|. +|.|.+|-.|.+..++- .-+|..+|--=.+ +.||.|+|+.....|
T Consensus 330 GikG~V~d~-~g~~i~~a~i~v~g~~~-------------------~v~t~~~GdywRl------l~pG~y~v~~~a~gy 383 (405)
T cd03869 330 GIKGVVRDK-TGKGIPNAIISVEGINH-------------------DIRTASDGDYWRL------LNPGEYRVTAHAEGY 383 (405)
T ss_pred CceEEEECC-CCCcCCCcEEEEecCcc-------------------ceeeCCCCceEEe------cCCceEEEEEEecCC
Confidence 466679998 99999998887754321 1356677744222 458999999999888
Q ss_pred CC
Q 020329 287 CP 288 (327)
Q Consensus 287 f~ 288 (327)
..
T Consensus 384 ~~ 385 (405)
T cd03869 384 TS 385 (405)
T ss_pred Cc
Confidence 64
No 74
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=31.39 E-value=89 Score=24.75 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=26.8
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCC
Q 020329 217 QGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQ 264 (327)
Q Consensus 217 ~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~ 264 (327)
...|.+|+.|.|.-.+. ++.-....++.||.+|...-
T Consensus 17 ~~~~l~GA~V~v~C~~~-----------~~~~~~~~~~~Td~~G~F~i 53 (97)
T PF01190_consen 17 AAKPLPGAKVSVECKDG-----------NGGVVFSAEAKTDENGYFSI 53 (97)
T ss_pred cCccCCCCEEEEECCCC-----------CCCcEEEEEEEeCCCCEEEE
Confidence 46799999999976442 12235678899999997653
No 75
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=30.53 E-value=1.9e+02 Score=24.16 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=29.0
Q ss_pred EEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCCCCCCCCceeEEEEEee
Q 020329 252 GSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIR 302 (327)
Q Consensus 252 ~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf~~~F~p~V~V~F~v~ 302 (327)
.++.++.||...- ..+.+|.|.|....-+|. |-| +|+.|.
T Consensus 22 ~~~~v~~dG~F~f-----~~Vp~GsY~L~V~s~~~~---F~~---~RVdV~ 61 (123)
T PF09430_consen 22 ISAFVRSDGSFVF-----HNVPPGSYLLEVHSPDYV---FPP---YRVDVS 61 (123)
T ss_pred eEEEecCCCEEEe-----CCCCCceEEEEEECCCcc---ccC---EEEEEe
Confidence 4678899997751 357799999999988884 444 555555
No 76
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=30.22 E-value=2.5e+02 Score=24.84 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=48.9
Q ss_pred cHHHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCC----CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020329 74 SKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGR----TAAEILAELKKRYTNRPIIEFEIAAQEQMKIT 147 (327)
Q Consensus 74 S~~EQa~al~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~----s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa 147 (327)
|.++=+..++ -..+..+.|.+|++.|.++..=.-|+++.|. ++.+.-..+++-+.......+..|.-|+-.|-
T Consensus 15 s~~~La~~l~-~~~~v~~~l~~L~~~y~~~~~gl~l~~~~~~y~l~tk~~~~~~v~~~~~~~~~~~LS~aalEtLAiI 91 (159)
T PF04079_consen 15 SIEELAEILG-SEDEVEEALEELQEEYNEEDRGLELVEVGGGYRLQTKPEYAEYVEKLFKKPKPPKLSQAALETLAII 91 (159)
T ss_dssp -HHHHHHHCT--HHHHHHHHHHHHHHHHHCT-SEEEEEETTEEEEEE-GGGHHHHHHHHCTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CHHHHHHHHHHHHHHhccCCCCEEEEEECCEEEEEEhHHHHHHHHHHhccCccCCCCHHHHHHHHHH
Confidence 4444444553 2344557899999999877733344445543 88888888888888878888888888876553
No 77
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=29.70 E-value=51 Score=28.28 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=49.8
Q ss_pred CCHHHHHHhhC------CHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCC---------CCCCCC---
Q 020329 8 LDEEELLGCCG------STKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHP---------QIGQSP--- 69 (327)
Q Consensus 8 m~~~~f~~~~~------spw~Ae~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP---------~LG~~~--- 69 (327)
|..+|+.+|.| +.|+-+.=|..-|+.-+.-=.+.+.. ++ +...++|++-| ++.+..
T Consensus 1 MT~eELA~~tG~srQTINrWvRkegW~T~p~pGVkGGrARLIh--Id----~~V~efi~s~~a~r~~~~~y~~~E~~~~y 74 (122)
T PF07037_consen 1 MTPEELAELTGYSRQTINRWVRKEGWKTEPKPGVKGGRARLIH--ID----EQVREFIRSIPAFRNRPALYRLAEPPAEY 74 (122)
T ss_pred CCHHHHHHHhCccHHHHHHHHHhcCceeccCCccccccceeee--ec----HHHHHHHHhhHHHhccchhhhccCCcccc
Confidence 78999999999 79999999999999876321111111 11 12334444444 555544
Q ss_pred -CCcccHHH-hhH-hhcCCCHHHHHHHHHH
Q 020329 70 -SSQWSKAE-QST-ALATANESSSQELSDW 96 (327)
Q Consensus 70 -ls~~S~~E-Qa~-al~~~~~~~~~~L~~L 96 (327)
.+..|.-+ |-- .+..+++.|.++|..|
T Consensus 75 ~~~~~~~l~~~ii~~~~~Mt~~EQ~~L~~l 104 (122)
T PF07037_consen 75 AVTWDSPLERQIIDTLEEMTPAEQEQLTSL 104 (122)
T ss_pred CCCCcchHHHHHHHHHHHCCHHHHHHHHHH
Confidence 22333333 322 2446888888888765
No 78
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=29.16 E-value=42 Score=31.80 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCC--CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhc
Q 020329 88 SSSQELSDWNNRYRLRFGFIFIICASGR--TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFS 156 (327)
Q Consensus 88 ~~~~~L~~LN~~YeekFGfpFVicv~G~--s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~~ 156 (327)
+....|..+|..|+..-++.=|=.|+|| +.+.|++-+++|=.+=+ ...+.+.|..||.+|+---+-
T Consensus 31 e~~~k~~~~~~~~~~~~~~~pie~Vt~RvK~~~Si~~Kl~RK~~~i~---~~~~~e~i~DIaGIRI~c~F~ 98 (231)
T COG2357 31 ELKTKLKILRDEYEKLHDYNPIEHVTSRVKSPESILEKLRRKGLEIT---YENLKEDIQDIAGIRIICQFV 98 (231)
T ss_pred HHHHHHHHHHHHHHhhcCCCchHHHhhccCCHHHHHHHHHhcCCCCC---hHHHHhHHHhhcceeEeeehH
Confidence 4557789999999999999999999998 77999999999833211 345667899999999754443
No 79
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.32 E-value=2.1e+02 Score=29.00 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCeEEEEec-CC-CHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020329 96 WNNRYRLRFGFIFIICAS-GR-TAAEILAELKKRYTNRPIIEFEIAAQEQM 144 (327)
Q Consensus 96 LN~~YeekFGfpFVicv~-G~-s~~eIL~~le~RL~N~~e~E~~~Al~Ev~ 144 (327)
+-+..++|||.||+...- |. .-++-|..+.+.+..+.+.+.+..+++-.
T Consensus 234 ~a~~Le~~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~ 284 (421)
T cd01976 234 IARMMEEKYGIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYK 284 (421)
T ss_pred HHHHHHHHhCCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 445678899999998741 22 22777888888888764444444444433
No 80
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=27.43 E-value=48 Score=30.48 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=20.3
Q ss_pred HhcCCeEEEEec-CCCHHHHHHHHHHHhc
Q 020329 102 LRFGFIFIICAS-GRTAAEILAELKKRYT 129 (327)
Q Consensus 102 ekFGfpFVicv~-G~s~~eIL~~le~RL~ 129 (327)
..||.||++.++ |-+-.++-+-|++|++
T Consensus 129 ~~hGiPF~f~v~~gE~f~~tK~Rl~~rlg 157 (213)
T PF14533_consen 129 RTHGIPFLFVVKPGETFSDTKERLQKRLG 157 (213)
T ss_dssp -EEEEEEEEEEETT--HHHHHHHHHHHH-
T ss_pred ccCCCCEEEEeeCCCcHHHHHHHHHHHhC
Confidence 789999999998 4577777777777773
No 81
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.09 E-value=1.1e+02 Score=21.86 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=18.8
Q ss_pred CCCCeeEEEEEeeCCCCCCCCCceeEEEEEe
Q 020329 271 DLNPGFYKITFNTGKYCPEGFFPYVSIVFEI 301 (327)
Q Consensus 271 ~~~~G~Y~l~F~tg~Yf~~~F~p~V~V~F~v 301 (327)
.+.||.|+|.....+=....-.....|.|.|
T Consensus 35 ~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 35 NLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp S--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred eCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 5779999999987665442223337777776
No 82
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=27.05 E-value=1.4e+02 Score=28.43 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCCCCcc-cHHH--hhHh-hcCCCHHHHHHHHHHHHHHHHhcCCeEEE
Q 020329 35 LNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQW-SKAE--QSTA-LATANESSSQELSDWNNRYRLRFGFIFII 110 (327)
Q Consensus 35 ~~~L~~a~~~~~~~~~~~~~~l~ll~aHP~LG~~~ls~~-S~~E--Qa~a-l~~~~~~~~~~L~~LN~~YeekFGfpFVi 110 (327)
+...|+.++++++...+.+...+.|...+-+-- -|.. ++.| |.-- .-.++++..++|.+..... +- .-||
T Consensus 35 F~~~HA~ArDAV~~~ld~~~l~~~l~~~~~~~v--~S~a~dR~~YL~RPDlGR~L~~~s~~~L~~~~~~~---~D-v~iV 108 (237)
T PF05985_consen 35 FRLDHARARDAVHAELDVEALAAQLQALPLLRV--QSQASDRAEYLRRPDLGRRLSEESRARLKELCEKG---PD-VQIV 108 (237)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHTT-EEE--EBS--SHHHHTT-HHHHTSB-HHHHHHHHHHS-SS----S-EEEE
T ss_pred HHHHHHHHhhhhccCCChhhhHHhhccCCcEEE--EeCCCCHHHHhhCCCCCCcCCHHHHHHHHHhcCCC---CC-EEEE
Confidence 456788888888877776666666666222110 1222 2222 2221 1247888888886544322 33 4456
Q ss_pred EecCCCHHHH
Q 020329 111 CASGRTAAEI 120 (327)
Q Consensus 111 cv~G~s~~eI 120 (327)
.+-|.|...|
T Consensus 109 iaDGLSa~Av 118 (237)
T PF05985_consen 109 IADGLSARAV 118 (237)
T ss_dssp EE-TT-HHHH
T ss_pred EcCCCCHHHH
Confidence 6788887655
No 83
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=26.81 E-value=35 Score=34.02 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=16.8
Q ss_pred CceeeeccCCCCCCCCCCEEEE
Q 020329 207 PITTHVLDVSQGSPAAGVEVRL 228 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L 228 (327)
.--.||||..+|.|+..-.+.+
T Consensus 256 ~ry~HilDP~TG~P~~~~~~sV 277 (337)
T COG1477 256 KRYHHILDPKTGYPIEHDLASV 277 (337)
T ss_pred EEEeeecCCCCCCCCcCCcceE
Confidence 3458999999999999444444
No 84
>PRK11072 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed
Probab=26.57 E-value=1.3e+02 Score=34.11 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=54.2
Q ss_pred HHHhhC-CHHHHHHHHhc----------C---CCCCHHHHHHHHHHHHhc--cCChhhHHHHHhhCC-----CCCCCCCC
Q 020329 13 LLGCCG-STKFAKEMASA----------S---PFASLNQAVSAARHIWFN--LVDVNGWLDAFSAHP-----QIGQSPSS 71 (327)
Q Consensus 13 f~~~~~-spw~Ae~~~~~----------R---PF~s~~~L~~a~~~~~~~--~~~~~~~l~ll~aHP-----~LG~~~ls 71 (327)
++..|+ |||+++.+... + ...+.+++.+.+...+.. ..+.+++++.||..= +|+-..++
T Consensus 555 L~~l~~~S~~la~~L~~~P~lld~L~~~~~~~~~~~~~~l~~~l~~~l~~~~~~d~e~~~~~LR~~k~~~~lri~~~dl~ 634 (943)
T PRK11072 555 LISLCAASPWIAEQLARYPLLLDELLDPRALYQPTDWDAYRDELRQYLLRVPEDDEEQQMEALRQFKQAQVLRIAAADIA 634 (943)
T ss_pred HHHHHHhCHHHHHHHHHCHHHHHHHhCcccccCCCCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555 78887766431 1 114556666555554321 125667777776432 33322222
Q ss_pred cccHHHhhH-hhcCCCHHHHH-HHHHHHHHHHHhcCCe---------EEEEecCC
Q 020329 72 QWSKAEQST-ALATANESSSQ-ELSDWNNRYRLRFGFI---------FIICASGR 115 (327)
Q Consensus 72 ~~S~~EQa~-al~~~~~~~~~-~L~~LN~~YeekFGfp---------FVicv~G~ 115 (327)
....-|+.+ .+..+-+..++ .|....+...+|+|.| |+|.+=||
T Consensus 635 g~~~~~~v~~~LS~lAd~~l~~~l~~a~~~l~~~~G~p~~~~~~~~~~aViamGK 689 (943)
T PRK11072 635 GVLPVMKVSDHLTYLAEAILDAVVQQAWQQMVKRHGEPPHLEGRERGFAVIGYGK 689 (943)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCCCCCEEEEeecC
Confidence 222233333 24333344443 3555566677799988 88888776
No 85
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=26.52 E-value=1.1e+02 Score=24.31 Aligned_cols=29 Identities=7% Similarity=0.182 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 020329 85 ANESSSQELSDWNNRYRLRFGFIFIICAS 113 (327)
Q Consensus 85 ~~~~~~~~L~~LN~~YeekFGfpFVicv~ 113 (327)
+|+++.++|.+..++++.+.|..++|..-
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv 30 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTV 30 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 58899999999999999999988855543
No 86
>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species. The function of this family is unknown.
Probab=26.29 E-value=46 Score=29.81 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCeEEE
Q 020329 93 LSDWNNRYRLRFGFIFII 110 (327)
Q Consensus 93 L~~LN~~YeekFGfpFVi 110 (327)
|..-.++|-.++|+|||+
T Consensus 87 Ls~~Q~~~L~rWGYPYV~ 104 (160)
T PF06299_consen 87 LSPRQRANLERWGYPYVM 104 (160)
T ss_pred CCHHHHHHHHHhCCCcee
Confidence 666678889999999996
No 87
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.90 E-value=1.4e+02 Score=26.43 Aligned_cols=38 Identities=21% Similarity=0.064 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 020329 116 TAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAK 153 (327)
Q Consensus 116 s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~ 153 (327)
+|.|=|+.|+++|..=|+.|++.++++-...-..+.++
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~ 39 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEE 39 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhC
Confidence 68899999999999999999999999988887777653
No 88
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=25.53 E-value=1.4e+02 Score=28.89 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=43.0
Q ss_pred CCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCce-EEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEee
Q 020329 205 RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWV-YQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNT 283 (327)
Q Consensus 205 ~~~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~-~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~t 283 (327)
-.+++.-|||- |+|.+|..|...-.+... .-.. -..+..+ .-....||++|++.-.. +..|.|.+.-..
T Consensus 171 ge~f~~~vl~~--GkPv~nA~V~v~~~n~~~-~d~~--a~~~~~ek~~~~~~TD~kG~~~fip-----~r~G~W~~~~~~ 240 (264)
T COG5266 171 GEVFRGKVLDN--GKPVPNATVEVEFDNIDT-KDNR--AKTGNTEKTALVQFTDDKGEVSFIP-----LRAGVWGFAVEH 240 (264)
T ss_pred CCeEEEEEEEC--CccCCCcEEEEEEecccc-cccc--cccCCCCCcceEEEcCCCceEEEEE-----ccCceEEEEeec
Confidence 45789999997 999999999987554110 0000 0011222 23567899999997432 346888765543
No 89
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=25.38 E-value=2.3e+02 Score=25.75 Aligned_cols=71 Identities=18% Similarity=0.094 Sum_probs=42.5
Q ss_pred cHHHhhHhhcCCC-HHHHHHHHHHHHHHHHhcCCeEEEEe-cC----CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 020329 74 SKAEQSTALATAN-ESSSQELSDWNNRYRLRFGFIFIICA-SG----RTAAEILAELKKRYTNRPIIEFEIAAQEQMKI 146 (327)
Q Consensus 74 S~~EQa~al~~~~-~~~~~~L~~LN~~YeekFGfpFVicv-~G----~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kI 146 (327)
|.++=+..+ ..+ .+....|.+||+.|+++ |..|.|.- .| .++.+.-..+++=........+..|.-|+-.|
T Consensus 22 s~~~La~~l-~~~~~~v~~~l~~L~~~y~~~-~~gi~i~~~~~~y~l~tk~e~~~~v~~~~~~~~~~~LS~aaLEtLai 98 (188)
T PRK00135 22 SLEQLAEIL-ELEPTEVQQLLEELQEKYEGD-DRGLKLIEFNDVYKLVTKEENADYLQKLVKTPIKQSLSQAALEVLAI 98 (188)
T ss_pred CHHHHHHHH-CCCHHHHHHHHHHHHHHHhhC-CCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccCCCCHHHHHHHHH
Confidence 344444444 233 45667899999999988 44444433 33 27777777777655554455666666555443
No 90
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=25.29 E-value=84 Score=35.42 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=49.8
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKY 286 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 286 (327)
.+|-.|||.+.|.|..|+.|.+... ..+.||++|-.+ + ..-...|+|.|.-.-.-|
T Consensus 317 SvtGRVl~g~~g~~l~gvvvlvngk--------------------~~~kTdaqGyyk--L--en~~t~gtytI~a~kehl 372 (1165)
T KOG1948|consen 317 SVTGRVLVGSKGLPLSGVVVLVNGK--------------------SGGKTDAQGYYK--L--ENLKTDGTYTITAKKEHL 372 (1165)
T ss_pred EeeeeEEeCCCCCCccceEEEEcCc--------------------ccceEcccceEE--e--eeeeccCcEEEEEeccce
Confidence 4678999999999999999988321 136899999775 1 122668999998765544
Q ss_pred -CC----------CCCCceeEEEEEeec
Q 020329 287 -CP----------EGFFPYVSIVFEIRE 303 (327)
Q Consensus 287 -f~----------~~F~p~V~V~F~v~~ 303 (327)
|. ...=+.+...|.|..
T Consensus 373 qFstv~~kv~pntasLpdI~a~~fdiCG 400 (1165)
T KOG1948|consen 373 QFSTVHAKVKPNTASLPDITAQKFDICG 400 (1165)
T ss_pred eeeeEEEEecCCccccccccccceeeee
Confidence 32 223344455666654
No 91
>PRK14108 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=24.79 E-value=1.8e+02 Score=33.12 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=57.3
Q ss_pred HHHHhhC-CHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCC-----CCCCCCCCc
Q 020329 12 ELLGCCG-STKFAKEMASA-------------SPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHP-----QIGQSPSSQ 72 (327)
Q Consensus 12 ~f~~~~~-spw~Ae~~~~~-------------RPF~s~~~L~~a~~~~~~~~~~~~~~l~ll~aHP-----~LG~~~ls~ 72 (327)
.++..|+ |||+++.+... .|..+.++|...+.+.+....+.+++++.||..= +|+-..+..
T Consensus 581 ~L~~ll~~S~~la~~L~~~P~lld~Lld~~~~~~~~~~~~l~~~l~~~l~~~~d~e~~~~~LR~~k~~~~lria~~dl~g 660 (986)
T PRK14108 581 LLVLIMGAAPRLADIIARRPHVFDGLLDPAFFSELPTRAYLSARLAAFLADAGSYEEVLDRLRIFAQEQRFLIGIRILTG 660 (986)
T ss_pred HHHHHHhcCHHHHHHHHHChHHHHHHcCcccccCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666 78877776542 2335777777776666533346677777776542 222211222
Q ss_pred ccHHHhhH-hhcCCCHHHH-HHHHHHHHHHHHhcCC----eEEEEecCC
Q 020329 73 WSKAEQST-ALATANESSS-QELSDWNNRYRLRFGF----IFIICASGR 115 (327)
Q Consensus 73 ~S~~EQa~-al~~~~~~~~-~~L~~LN~~YeekFGf----pFVicv~G~ 115 (327)
...-++.+ .+..+-+..+ ..|...-+...++||. .|+|.+=||
T Consensus 661 ~~~~~~v~~~Ls~LAda~l~~al~~a~~~~~~~~G~~~~~~~aViamGK 709 (986)
T PRK14108 661 TISGQRAGRAFADLAELIIGAALDAVEEEFARAHGRIKGGRVAILAMGK 709 (986)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEeeCC
Confidence 21123332 2333344444 3344455666788885 489988887
No 92
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=24.58 E-value=2.8e+02 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCeEEEEecCCCH---HHHHHHHHHHhc
Q 020329 96 WNNRYRLRFGFIFIICASGRTA---AEILAELKKRYT 129 (327)
Q Consensus 96 LN~~YeekFGfpFVicv~G~s~---~eIL~~le~RL~ 129 (327)
+-+..++|||-|||.+..--.. ++-|+.+.+.+.
T Consensus 207 ~a~~L~e~~giP~~~~~~p~G~~~t~~~l~~i~~~lg 243 (398)
T PF00148_consen 207 AAEWLEERFGIPYLYFPSPYGIEGTDAWLRAIAEALG 243 (398)
T ss_dssp HHHHHHHHHT-EEEEEC-SBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeeeccccccHHHHHHHHHHHHHHhC
Confidence 5567899999999996554333 677788888887
No 93
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.48 E-value=1.4e+02 Score=33.27 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=46.6
Q ss_pred ceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCcCCCccCCCCeeEEEEEeeCCCC
Q 020329 208 ITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC 287 (327)
Q Consensus 208 iTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf 287 (327)
|=+||.|..+=.|.++-.|++|. +.+.+++++|+.||-+--++ ....|.+-++-.+++=|
T Consensus 3 lKV~V~d~~t~qpl~~A~V~V~~----------------N~t~~~s~~t~~dG~~~l~~----~yrlg~~l~v~a~k~gy 62 (807)
T PF10577_consen 3 LKVQVSDASTRQPLSDASVEVFG----------------NQTLTASGTTGNDGVVLLKF----PYRLGTWLIVTASKDGY 62 (807)
T ss_pred EEEEEecccCcccCCCCeEEEEe----------------ceeEeecceecCCceEEEEE----eccCCCeEEEEEecCCc
Confidence 55899999999999999999974 45789999999999774333 34577777776665544
No 94
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=24.06 E-value=61 Score=22.37 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=9.9
Q ss_pred CCeeEEEEEeeC
Q 020329 273 NPGFYKITFNTG 284 (327)
Q Consensus 273 ~~G~Y~l~F~tg 284 (327)
.||+|+|.|..-
T Consensus 11 ~PG~Y~l~~~a~ 22 (41)
T TIGR03769 11 KPGTYTLTVQAT 22 (41)
T ss_pred CCeEEEEEEEEE
Confidence 489999999653
No 95
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.94 E-value=1.8e+02 Score=29.39 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCeEEEEe---cCCCH-HHHHHHHHHHhcCCh
Q 020329 96 WNNRYRLRFGFIFIICA---SGRTA-AEILAELKKRYTNRP 132 (327)
Q Consensus 96 LN~~YeekFGfpFVicv---~G~s~-~eIL~~le~RL~N~~ 132 (327)
+-+..++|||.|||..- -|... ++-|..+.+.+..+.
T Consensus 222 ~a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~~ 262 (427)
T cd01971 222 FAQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIEK 262 (427)
T ss_pred HHHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCCh
Confidence 44567889999999873 45533 778888888888664
No 96
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=23.73 E-value=72 Score=24.42 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhh
Q 020329 118 AEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLF 155 (327)
Q Consensus 118 ~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa~~RL~~l~ 155 (327)
=++|+....+|....+.|++.+++=+..|-+.||-.-+
T Consensus 12 LelLe~y~~~L~~~~D~~lr~~ierli~ifkS~LF~AL 49 (64)
T PF09058_consen 12 LELLEEYHNKLSRPEDEELRTAIERLINIFKSRLFQAL 49 (64)
T ss_dssp HHHHHHHHHTTSSSS-CCHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888899999999999999999999999985543
No 97
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=22.87 E-value=1.7e+02 Score=26.78 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhc
Q 020329 87 ESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYT 129 (327)
Q Consensus 87 ~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~eIL~~le~RL~ 129 (327)
++..+.|.+|. +-|++||+| +||+..++...+ +.+.
T Consensus 18 ~~~~~ai~~l~-----~~G~~~vi~-TgR~~~~~~~~~-~~lg 53 (225)
T TIGR02461 18 GPAREALEELK-----DLGFPIVFV-SSKTRAEQEYYR-EELG 53 (225)
T ss_pred hHHHHHHHHHH-----HCCCEEEEE-eCCCHHHHHHHH-HHcC
Confidence 34455554443 349999998 899998877644 4444
No 98
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=21.80 E-value=1.1e+02 Score=24.07 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=19.4
Q ss_pred CHHHHHHHHhcC---CCCCHHHHHHHHH
Q 020329 19 STKFAKEMASAS---PFASLNQAVSAAR 43 (327)
Q Consensus 19 spw~Ae~~~~~R---PF~s~~~L~~a~~ 43 (327)
....|+.+...| ||.|+++++..+.
T Consensus 36 g~~~a~~I~~~R~~g~f~s~~df~~R~~ 63 (90)
T PF14579_consen 36 GEEVAEKIVEERENGPFKSLEDFIQRLP 63 (90)
T ss_dssp -HHHHHHHHHHHHCSS-SSHHHHHHHS-
T ss_pred CHHHHHHHHHhHhcCCCCCHHHHHHHHh
Confidence 577888888888 9999999998874
No 99
>COG5255 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.79 E-value=52 Score=30.92 Aligned_cols=87 Identities=16% Similarity=0.251 Sum_probs=58.8
Q ss_pred HHhhCCCCCCCC-CCcccHHHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHH---HHHHHHHHHhcCChH
Q 020329 58 AFSAHPQIGQSP-SSQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAA---EILAELKKRYTNRPI 133 (327)
Q Consensus 58 ll~aHP~LG~~~-ls~~S~~EQa~al~~~~~~~~~~L~~LN~~YeekFGfpFVicv~G~s~~---eIL~~le~RL~N~~e 133 (327)
=|.+.|-+++.. +-..+..=|.-....+++++...|.++-...-++||.. .-++++- =-|.-+.++|.-+.+
T Consensus 120 rLk~F~l~~~~~~mrvte~rp~~i~v~paddad~~~l~~~Rd~ls~~~g~r----~P~HDaY~FHITlgYl~~wltpee~ 195 (239)
T COG5255 120 RLKIFPLLDEEFNMRVTEMRPQGILVEPADDADAKILEEWRDYLSEKFGYR----HPDHDAYQFHITLGYLRIWLTPEEE 195 (239)
T ss_pred HHhcccCCchhhcchhhcccccceEeccCCHHHHHHHHHHHHHHhhhhccc----CCCCcceEEEEEeeeEeeecChhhh
Confidence 344556665432 33333344554444789999999999999999999864 4455442 234556678888899
Q ss_pred HHHHHHHHHHHHHHH
Q 020329 134 IEFEIAAQEQMKITE 148 (327)
Q Consensus 134 ~E~~~Al~Ev~kIa~ 148 (327)
.|.+.++.|...|-.
T Consensus 196 a~~q~~l~e~~e~la 210 (239)
T COG5255 196 AEWQAVLDELLEILA 210 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877643
No 100
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=21.67 E-value=2.3e+02 Score=22.67 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=26.2
Q ss_pred ecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 020329 112 ASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKIT 147 (327)
Q Consensus 112 v~G~s~~eIL~~le~RL~N~~e~E~~~Al~Ev~kIa 147 (327)
.+|.+..+|...|++|+..+...=...|..|+.++.
T Consensus 10 ~~G~~~~~iak~i~~~~~~~~~~A~~iarTe~~~a~ 45 (108)
T TIGR01641 10 QRGLGPNELAKRLRKELGVQKHYAQRLARTETARIY 45 (108)
T ss_pred HcCCCHHHHHHHHHHHHCccHHHHHHHHHHHHHHHH
Confidence 468999999999999998775544555555555554
No 101
>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein. This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.
Probab=21.50 E-value=67 Score=30.36 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCHHHHHH-----HHHHHHHHHHhcCCeEEE
Q 020329 85 ANESSSQE-----LSDWNNRYRLRFGFIFII 110 (327)
Q Consensus 85 ~~~~~~~~-----L~~LN~~YeekFGfpFVi 110 (327)
+|++++++ |..-.++|-.++|+|||+
T Consensus 134 ls~aelaRRr~~~Ls~~Q~~~L~~WGYPYV~ 164 (228)
T TIGR03223 134 LTEAELARRRPDQLTPRQRALLERWGYPYVL 164 (228)
T ss_pred CCHHHHhhcCccCCCHHHHHHHHHcCCCcee
Confidence 57777765 788889999999999996
No 102
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.28 E-value=1e+02 Score=24.30 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=30.1
Q ss_pred hHHHHHhhCCCCCCCCCCcccHHHhhHhhcCCCHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 020329 54 GWLDAFSAHPQIGQSPSSQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICAS 113 (327)
Q Consensus 54 ~~l~ll~aHP~LG~~~ls~~S~~EQa~al~~~~~~~~~~L~~LN~~YeekFGfpFVicv~ 113 (327)
+..-.|-.||+=. + |+ ..=.+-..++.++.++|+++||=-..-++.
T Consensus 17 dl~LyLDTHP~d~-----------~--Al-~~y~~~~~~~~~l~~~Ye~~yGPLt~~~~~ 62 (78)
T PF12652_consen 17 DLNLYLDTHPDDQ-----------E--AL-EYYNEYSKQRKQLKKEYEKRYGPLTNFGVS 62 (78)
T ss_pred HHHHHhcCCCCcH-----------H--HH-HHHHHHHHHHHHHHHHHHHHhCCCcCCCcC
Confidence 4556788999721 1 12 123345578899999999999965554444
No 103
>PRK15316 RatA-like protein; Provisional
Probab=20.71 E-value=1.2e+02 Score=37.19 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.4
Q ss_pred CceeeeccCCCCCCCCCCEEEEEEecC
Q 020329 207 PITTHVLDVSQGSPAAGVEVRLEMWKG 233 (327)
Q Consensus 207 ~iTtHVLDt~~G~PA~gv~V~L~~~~~ 233 (327)
||+.-|.|.. |.|.+|+.|+|.+...
T Consensus 2164 PLTVTVKD~~-GnPv~nva~tLkRg~A 2189 (2683)
T PRK15316 2164 PIVVTIKDAN-GNPVGGEGVTLKRVQA 2189 (2683)
T ss_pred eEEEEEEcCC-CCCcCCceEEEeeccc
Confidence 5999999998 9999999999988653
No 104
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=20.08 E-value=2.7e+02 Score=27.67 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=50.2
Q ss_pred CCHHHHHHHHH------------HHHHHHHhc-CCeEEEE-------ecCC-CHHHHHHHHHHHhcC-------------
Q 020329 85 ANESSSQELSD------------WNNRYRLRF-GFIFIIC-------ASGR-TAAEILAELKKRYTN------------- 130 (327)
Q Consensus 85 ~~~~~~~~L~~------------LN~~YeekF-GfpFVic-------v~G~-s~~eIL~~le~RL~N------------- 130 (327)
.+++++++++- ..++|-.-| ||-|+=+ |+-. -..+++++||.|+--
T Consensus 126 ~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~ 205 (333)
T COG2605 126 LGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVI 205 (333)
T ss_pred CCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceEEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccchhHHH
Confidence 57777777653 357899999 9999844 3333 448999999998741
Q ss_pred --------ChHHHHHHHHHHHHHHHHHHHHhhhc
Q 020329 131 --------RPIIEFEIAAQEQMKITELRLAKLFS 156 (327)
Q Consensus 131 --------~~e~E~~~Al~Ev~kIa~~RL~~l~~ 156 (327)
+.++|-.+++-||++.|. |+.+.+-
T Consensus 206 ~dQ~~~~~~~~~~~~e~~~~mk~~A~-~~~~al~ 238 (333)
T COG2605 206 EDQVRNVVDGDEETLEALHEMKALAY-EMKDALV 238 (333)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHH-HHHHHHH
Confidence 246677888999998875 5555544
Done!