BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020330
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/314 (69%), Positives = 245/314 (78%), Gaps = 9/314 (2%)
Query: 18 KLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGY 77
K YP PL+ HE V KD VFWDTLRRFH IM TKFMIPVIGGKELDLHVLYVE T RGGY
Sbjct: 25 KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84
Query: 78 EKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSASFS 137
EKVV EKKWREVG VF+FS TTTSASFVLRKHYL LL+HYEQVH F +GP P A+F
Sbjct: 85 EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATFH 144
Query: 138 VHSPSCRPGLALVEYSPKRI---NDHPDSHIEGQSCFTAVGRIDGKFDCGYLVSVKLGSE 194
+PS +ALVEY+P I N HP S +G S FTA+G I+GKFDCGYLV VKLGSE
Sbjct: 145 A-NPSTSKEMALVEYTPPSIRYHNTHPPS--QGSSSFTAIGTIEGKFDCGYLVKVKLGSE 201
Query: 195 TLSGVLYHPDHPGPSTSFCQSNDVGAIIPY--TPNSKRRYGRRRRSKRRGDPSYPKPNRS 252
L+GVLYH PGPS+S + A++PY T +RR G+RRRS+RR DP+YPKPNRS
Sbjct: 202 ILNGVLYHSAQPGPSSSPTAVLN-NAVVPYVETGRRRRRLGKRRRSRRREDPNYPKPNRS 260
Query: 253 GYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKE 312
GYNFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EER VYQ+IGLKDKERY REL E
Sbjct: 261 GYNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNE 320
Query: 313 YKERLKLRQGEGAN 326
Y+E L+LR G+ N
Sbjct: 321 YRETLRLRDGDMTN 334
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 143/343 (41%), Positives = 212/343 (61%), Gaps = 38/343 (11%)
Query: 4 SSAAKTKGRSVVEDKLYPAPLSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELD 63
+S++ K SV + + P +++E V DP +F +L R H ++GTKFM+P+IGG++LD
Sbjct: 2 ASSSCLKQGSVPMNNVCVTPEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLD 61
Query: 64 LHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
LH L+VE T+RGG K++ E++W+EV A F F PT T+AS+VLRK+Y +LL +YEQ++FF
Sbjct: 62 LHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFF 121
Query: 124 KMQG--PPCVPSASFSVHSPSCRP-----------GLALVEYSPK-RINDHPDSHIEGQS 169
+ G PP S+ SPS RP L + ++P+ +IN + G S
Sbjct: 122 RSNGQIPPD------SMQSPSARPCFIQGAIRPSQELQALTFTPQPKIN---TAEFLGGS 172
Query: 170 CF--TAVGRIDGKFDCGYLVSVKLGSETLSGVLYHPDHPGPSTSFCQSNDVGAIIPYTPN 227
VG IDGKF+ GYLV+V +GSE L GVLY P + S+ ++P T N
Sbjct: 173 LAGSNVVGVIDGKFESGYLVTVTIGSEQLKGVLYQ-LLPQNTVSYQTPQQSHGVLPNTLN 231
Query: 228 ------------SKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRERE 275
+KRR R++ +R DP +PKPNRSGYNFFFAE+H +LK L+P ++R+
Sbjct: 232 ISANPQGVAGGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKDRD 291
Query: 276 FTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 318
++MIGE W L+ +E+ +YQ ++DKERY E+++Y+E+ K
Sbjct: 292 ISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKK 334
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 211 bits (536), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 174/292 (59%), Gaps = 22/292 (7%)
Query: 25 SSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEK 84
+ ++D+ ++ +FW+ LR F + +P +GG LDLH L++E T+RGG E+VV ++
Sbjct: 34 AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93
Query: 85 KWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSASFSVHSPSCR 144
KW+EV F F T TSASFVLRK+YL L+ E V++ + P +S + +
Sbjct: 94 KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYLEK------PVSSLQSTDEALK 147
Query: 145 PGLALVEYSPKRINDHPDSHI-EGQSCFTAVGRIDGKFDCGYLVSVKLGSETLSGVLYH- 202
+L SP +P+ I E Q + G IDGKFD GYLV++KLGS+ L GVLYH
Sbjct: 148 ---SLANESP-----NPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHI 199
Query: 203 PDHPGPSTSFCQSNDVGAIIPYTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKH 262
P P S ++ AI+ +S+RR+ R++ D PK +RSGYNFFFAE++
Sbjct: 200 PQTPSQSQQTMETP--SAIV---QSSQRRH-RKKSKLAVVDTQKPKCHRSGYNFFFAEQY 253
Query: 263 YKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 314
+LK Y +ER TK IG W+NL+ E++VYQ+ G+KD ERY E+ EYK
Sbjct: 254 ARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYK 305
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 163/298 (54%), Gaps = 37/298 (12%)
Query: 27 HEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKW 86
++D+ ++P +FW+ LR FH KF IP++GGK LDLH L+ E T+RGG EKV+ +++
Sbjct: 30 YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89
Query: 87 REVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGPPCVPSASFSVHSPSCRPG 146
+EV F F T T+++FVLRK YL +L+ +E +++F+ P ++F + +
Sbjct: 90 KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYFQ------APLSTFWEKEKALK-- 141
Query: 147 LALVEYSPKRINDHPDSHIEGQSCFTAVGRIDGKFDCGYLVSVKLGSETLSGVLYHPDHP 206
L+E S R D E + G IDGKF+ GYL+S K+GSE L G+LYH
Sbjct: 142 -LLIEKSANRDKDSQ----ELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH---- 192
Query: 207 GPSTSFCQSNDVGAIIPYTPNSKRRYGRRRRSKRRGDPSY-PKPNRSGYNFFFAEKHYKL 265
+P +KR G+++ +GD PK R+GYNFF AE+ ++
Sbjct: 193 -----------------ISPETKR--GKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRI 233
Query: 266 KSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLRQGE 323
K+ ++ K G WTNLS +RKVY +D +RY E+ +Y+ ++ R E
Sbjct: 234 KAENAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLMESRVAE 291
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 84.7 bits (208), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 29 DVSKDPIVFWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWR 87
D + + F D LR+FH G+ F IP +GGKELDLH LY TT GG+ KV + +W
Sbjct: 11 DERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG 70
Query: 88 EVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFF 123
E+ F F + ++A+F L+++YL L YE+VH F
Sbjct: 71 EIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHF 106
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LYV T +GG +V+ +K WRE+
Sbjct: 215 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 274
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 275 PTSITSAAFTLRTQYMKYLYPYE 297
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LYV T +GG +V+ +K WRE+
Sbjct: 218 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 277
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 278 PTSITSAAFTLRTQYMKYLYPYE 300
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 304 PTSITSAAFTLRTQYMKYLYPYE 326
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGSL-LKSHYERILYPYE 170
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL +LYV T +GG +V+ +K WRE+
Sbjct: 249 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 308
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 309 PTSITSAAFTLRTQYMKYLYPYE 331
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E +++ + F D L +F + G+ IPV+ K LDL+ L ++GG+E V E
Sbjct: 77 LNELEAMTRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEIVTKE 136
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
KKW +VG+ + P + S L+ HY +LY YE
Sbjct: 137 KKWSKVGSRLGYLPGKGTGSL-LKSHYERILYPYE 170
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LY T +GG +++ +K WRE+
Sbjct: 219 FLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNL 278
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 279 PTSITSAAFTLRTQYMKYLYAYE 301
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL+ LY T +GG +V+ +K WRE+
Sbjct: 238 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNL 297
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 298 PTSITSAAFTLRTQYMKYLYPYE 320
>sp|P40632|NHP1_BABBO High mobility group protein homolog NHP1 OS=Babesia bovis PE=1 SV=1
Length = 97
Score = 60.5 bits (145), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 231 RYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFT---KMIGESWTNL 287
R G RR K + DP+ PK S Y FF EK ++ + P ++ KMIG +W L
Sbjct: 7 RTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNAL 66
Query: 288 SPEERKVYQNIGLKDKERYNRELKEYKER 316
S EE+K Y+ + +D+ RY RE EY +R
Sbjct: 67 SDEEKKPYERMSDEDRVRYEREKAEYAQR 95
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 116 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 175
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 176 PTTITSAAFTLRTQYMKYLYPYE 198
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL++LY T +GG +++ +K WRE+
Sbjct: 221 FLDDLFVFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNL 280
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 281 PTSITSAAFTLRTQYMKYLYAYE 303
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ + LDL+ L+ T +GG +V+ K WREV
Sbjct: 119 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 178
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
T TSA+F LR Y+ LY YE
Sbjct: 179 PTTITSAAFTLRTQYMKYLYPYE 201
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L + GT IP++ + LDL+ LY +GG +V+ +K+WRE+
Sbjct: 208 FLDDLFSYMQKRGTPVNRIPIMAKQVLDLYELYNLVVAKGGLVEVINKKQWREITKGLNL 267
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 268 PASITSAAFTLRTQYMKYLYPYE 290
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 13 SVVEDKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLY 68
+V DKL P L+ E ++ + F D + +F + G+ IP++ K LDL+ L+
Sbjct: 204 AVDVDKLRFVPRVQRLNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLH 263
Query: 69 VEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQVHFFKMQGP 128
GG E+ ++KW +V ++ P++ S L+ HY +L+ +E K+ GP
Sbjct: 264 RIVQEEGGMEQTTKDRKWAKVANRMQY-PSSKSVGATLKAHYERILHPFEVYTSGKVLGP 322
Query: 129 PCVPSASFSVHSP 141
P++S S +P
Sbjct: 323 --TPTSSGSGSTP 333
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT IP++ + LDL+ LY +GG +V+ +K WRE+
Sbjct: 255 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNL 314
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY +E
Sbjct: 315 PSSITSAAFTLRTQYMKYLYPFE 337
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 224 YTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREF-----TK 278
Y P GR ++ K+ DP+ PK + S + +F ++ K+K+L P EF K
Sbjct: 248 YVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNP----EFGVGDIAK 303
Query: 279 MIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 319
+G W+++ PE ++ Y+++ +DK RY RE+ EYK K+
Sbjct: 304 ELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKI 344
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 247 PKPNRSGYNFFFAEKHYKLKSLYPNRE---REFTKMIGESWTNLSPEERKVYQNIGLKDK 303
P+ + Y +F + K +P+ EF++ E W + +E+K + + KDK
Sbjct: 179 PRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDK 238
Query: 304 ERYNRELKEY 313
+RY E++ Y
Sbjct: 239 QRYEAEMQNY 248
>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
SV=1
Length = 348
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 233 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEE 291
GR+R+ R D + PK +GY F E+ +L++ P E T+M+G W+ L PEE
Sbjct: 91 GRKRKKPLR-DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 149
Query: 292 RKVYQNIGLKDKERYNRELKEYK 314
++ Y + +DKERY REL++Y+
Sbjct: 150 KRRYLDEADRDKERYMRELEQYQ 172
>sp|P87057|NHP6_SCHPO Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nhp6 PE=3 SV=1
Length = 108
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 237 RSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVY 295
+S R+ DP+ PK N S + FF E K+K+ P+ + ++G+ W L+ ER+ Y
Sbjct: 6 KSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPY 65
Query: 296 QNIGLKDKERYNRELKEYKERL 317
+ +DKERY RE KEY +L
Sbjct: 66 EEKARQDKERYERERKEYDTKL 87
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 37 FWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
F D L F GT +P++ LDL+ LY RGG V+ +K W+E+
Sbjct: 299 FLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHL 358
Query: 96 SPTTTSASFVLRKHYLTLLYHYE 118
+ TSA+F LR Y+ LY YE
Sbjct: 359 PSSITSAAFTLRTQYMKYLYPYE 381
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 39 DTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPT 98
D L H I IP++ + LDL+ LY GG +++ +K WRE+ +
Sbjct: 190 DWLNFMHRIGKPVTRIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSS 249
Query: 99 TTSASFVLRKHYLTLLYHYE 118
TSA+F LR Y LY YE
Sbjct: 250 ITSAAFTLRTQYQKYLYDYE 269
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 233 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEE 291
GR+R+ R D + PK +GY F E+ +L++ P E T+M+G W+ L PEE
Sbjct: 89 GRKRKKPLR-DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 147
Query: 292 RKVYQNIGLKDKERYNRELKEYK 314
++ Y + +DKERY +EL++Y+
Sbjct: 148 KQRYLDEADRDKERYMKELEQYQ 170
>sp|P26586|HMGL_TRYBR High mobility group protein homolog TDP-1 OS=Trypanosoma brucei
rhodesiense PE=2 SV=1
Length = 271
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 224 YTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFF---FAEKHYKLKSLYPNREREFTKMI 280
Y + YGR + K+ D + PK + + FF F KH L + E +K
Sbjct: 185 YKRQGGKEYGRGGKIKK--DSNAPKRAMTSFMFFSSDFRSKHSDLSIV------EMSKAA 236
Query: 281 GESWTNLSPEERKVYQNIGLKDKERYNREL 310
G +W L PEERKVY+ + KDKERY RE+
Sbjct: 237 GAAWKELGPEERKVYEEMAEKDKERYKREM 266
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 246 YPKPNRSGYNFFFAEKHYKLKSLYPNRER-EFTKMIGESWTNLSPEERKVYQNIGLKDKE 304
YPKP S Y F A++ +LK+ P + + +G+ W++ S + ++ Y+ +DK
Sbjct: 117 YPKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDVKEHYRKKAEEDKA 176
Query: 305 RYNRELKEYKERLKLRQG 322
R+ RE+ EYK RQG
Sbjct: 177 RFRREVDEYK-----RQG 189
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 233 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEE 291
GR+R+ R D + PK +GY F E+ +L++ P E T+M+G W+ L PEE
Sbjct: 90 GRKRKKPLR-DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
Query: 292 RKVYQNIGLKDKERYNRELKEYK 314
++ Y + +DKERY +EL++Y+
Sbjct: 149 KQRYLDEADRDKERYMKELEQYQ 171
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 37 FWDTLRRFHFIMGTKFM-IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKF 95
+ D LR F T P I + LDL+ LY+ RGG+ +V K W+++ +
Sbjct: 1006 WLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGI 1065
Query: 96 SPTTTSASFVLRKHYLTLLYHYEQVHF 122
++SA++ LRKHY L +E HF
Sbjct: 1066 G-ASSSAAYTLRKHYTKNLLTFE-CHF 1090
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVA 82
LS E+ D F L ++ T IP +G K+++L ++ A GGYE + A
Sbjct: 312 LSIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITA 371
Query: 83 EKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119
++W+ + +P +TSA+ R+HY L+ YE+
Sbjct: 372 RRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 408
>sp|E1BLP6|ARI5B_BOVIN AT-rich interactive domain-containing protein 5B OS=Bos taurus
GN=ARID5B PE=3 SV=1
Length = 1173
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 346 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 405
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 406 ILPYER 411
>sp|E2R9X2|ARI5B_CANFA AT-rich interactive domain-containing protein 5B OS=Canis
familiaris GN=ARID5B PE=3 SV=1
Length = 1187
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 343 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 402
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 403 ILPYER 408
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 230 RRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLS 288
+ YG + K++ DP+ PK SG+ F +E K+KS P + K +GE W NLS
Sbjct: 76 KDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLS 135
Query: 289 PEERKVYQNIGLKDKERYNRELKEYKERLKLRQGEGA 325
E++ Y N K KE+Y +++ +YK + K +GA
Sbjct: 136 DSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGA 172
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 252 SGYNFFFA---EKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNR 308
S Y FF E+H K P EF+K E W +S +E+ + + DK RY+R
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 309 ELKEY 313
E+K+Y
Sbjct: 74 EMKDY 78
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 345 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 404
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 405 ILPYER 410
>sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens
GN=ARID5B PE=1 SV=3
Length = 1188
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ + +P +TSA+ R+HY L
Sbjct: 342 IPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 401
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 402 ILPYER 407
>sp|P40630|TFAM_MOUSE Transcription factor A, mitochondrial OS=Mus musculus GN=Tfam PE=1
SV=2
Length = 243
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 229 KRRYGRRRRSKRR-----GDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGES 283
+RR ++ KRR G P P RS YN + +E + K + + K++ E+
Sbjct: 134 QRRLKKKALVKRRELILLGKPKRP---RSAYNIYVSESFQEAKD---DSAQGKLKLVNEA 187
Query: 284 WTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 317
W NLSPEE++ Y + D+ RY+ E+K ++E++
Sbjct: 188 WKNLSPEEKQAYIQLAKDDRIRYDNEMKSWEEQM 221
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 245 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDK 303
SYPK S Y F E+ K K+ +P+ + E + I W L E+KVY+ +
Sbjct: 47 SYPKKPMSSYLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEW 106
Query: 304 ERYNRELKEYKERL 317
+ Y + +YKE+L
Sbjct: 107 KAYKEAVSKYKEQL 120
>sp|E7F888|ARI5B_DANRE AT-rich interactive domain-containing protein 5B OS=Danio rerio
GN=arid5b PE=3 SV=1
Length = 1044
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
IP +G K+++L ++ A GGYE + A ++W+ V +P +TSA+ R+HY L
Sbjct: 236 IPYLGFKQINLWTMFQAAQKLGGYEVITARRQWKNVYDELGGNPGSTSAATCTRRHYERL 295
Query: 114 LYHYEQ 119
+ YE+
Sbjct: 296 ILPYER 301
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2
Length = 1503
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
D+L+ P L+ E ++ + F D + +F + G IP + K LDL+ L
Sbjct: 62 DRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWDLQGCTLKIPHVERKILDLYQLNKLVA 121
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG++ V E++W ++ F+P S LR HY +LY Y
Sbjct: 122 DEGGFDLVCRERRWTKIAMTMGFAPGKAVGSH-LRAHYERILYPY 165
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
Length = 1522
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 17 DKLYPAP----LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEAT 72
DKL+ P L+ E ++ + F D + +F + G IP + K LDL L
Sbjct: 57 DKLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLFQLNRLVA 116
Query: 73 TRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117
GG++ V E+KW ++ F+P S + R HY +LY Y
Sbjct: 117 EEGGFDVVCKERKWTKIATRMGFAPGKAVGSHI-RAHYERILYPY 160
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2
Length = 1560
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNYPPGKNIGSL-LRSHYERIVYPYE 165
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2
Length = 1539
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + K LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S LR HY ++Y YE
Sbjct: 132 RRWARVAQRLHYPPGKNIGSL-LRSHYERIIYPYE 165
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2
SV=1
Length = 1535
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + K LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S LR HY ++Y YE
Sbjct: 132 RRWARVAQRLHYPPGKNIGSL-LRSHYERIIYPYE 165
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNYPPGKNIGSL-LRSHYERIVYPYE 165
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 234 RRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEER 292
+R+RS R D + PK +GY F E+ +L++ P+ E T+++G W+ L E+
Sbjct: 90 KRKRSPR--DNNAPKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEK 147
Query: 293 KVYQNIGLKDKERYNRELKEYK 314
+ Y + KDKERY +EL++Y+
Sbjct: 148 QHYLDEAEKDKERYTKELQQYQ 169
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4
Length = 1554
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + + LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P S LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNYPPGKNIGSL-LRSHYERIVYPYE 165
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2
Length = 1548
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAE 83
L+ E ++ + + D + +F I G+ IP + K LDL+ L GGYE + +
Sbjct: 72 LNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLNKIVMEEGGYEAICKD 131
Query: 84 KKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYE 118
++W V + P+ + +LR HY ++Y YE
Sbjct: 132 RRWARVAQRLNY-PSGKNIGSLLRSHYERIIYPYE 165
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 234 RRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEER 292
+R+RS R D + PK +GY F E+ +L++ P+ E T+++G W+ L E+
Sbjct: 90 KRKRSPR--DNNAPKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEK 147
Query: 293 KVYQNIGLKDKERYNRELKEYK 314
+ Y + KDKERY +EL++Y+
Sbjct: 148 QHYLDEAEKDKERYTKELQKYQ 169
>sp|Q32L68|HM20B_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Bos taurus
GN=HMG20B PE=2 SV=1
Length = 317
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 244 PSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWTNLSPEERKVYQNIGLKD 302
P+ PK +GY F E+ ++++ +P+ E TKM+G W+ L P E++ Y + ++
Sbjct: 67 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 126
Query: 303 KERYNRELKEYKE 315
K++Y +EL+ Y++
Sbjct: 127 KQQYMKELRAYQQ 139
>sp|A2BH40|ARI1A_MOUSE AT-rich interactive domain-containing protein 1A OS=Mus musculus
GN=Arid1a PE=1 SV=1
Length = 2283
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 54 IPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113
+P +G K LDL+ LYV GG +V KKWRE+ T++SA+ L+K Y+
Sbjct: 1042 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG-TSSSAASSLKKQYIQC 1100
Query: 114 LYHYE 118
LY +E
Sbjct: 1101 LYAFE 1105
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 225 TPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNRE-REFTKMIGES 283
P K + R +++ DP+ PK S Y FF + K++ P + KM+GE
Sbjct: 5 NPTRKTKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEK 64
Query: 284 WTNLSPEERKVYQNIGLKDKERYNRELKEYK 314
W +LS +ERK Y++ DK+RY E YK
Sbjct: 65 WKSLSDKERKPYEDKAAADKKRYEDEKAAYK 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,047,623
Number of Sequences: 539616
Number of extensions: 5920300
Number of successful extensions: 14273
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 13919
Number of HSP's gapped (non-prelim): 285
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)