Query 020330
Match_columns 327
No_of_seqs 296 out of 1606
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 99.9 9.9E-29 3.4E-33 201.3 6.3 101 32-133 2-103 (107)
2 2jrz_A Histone demethylase jar 99.9 1.5E-27 5.1E-32 197.3 8.6 96 26-122 4-99 (117)
3 2eqy_A RBP2 like, jumonji, at 99.9 2.6E-27 8.9E-32 197.2 9.8 97 24-121 4-100 (122)
4 2rq5_A Protein jumonji; develo 99.9 3.2E-27 1.1E-31 196.2 9.9 91 32-122 11-102 (121)
5 2cxy_A BAF250B subunit, HBAF25 99.9 6.1E-27 2.1E-31 195.8 10.6 97 32-129 20-117 (125)
6 2lm1_A Lysine-specific demethy 99.9 2.8E-27 9.6E-32 192.6 8.0 97 24-121 6-102 (107)
7 2jxj_A Histone demethylase jar 99.9 2.8E-27 9.5E-32 189.0 7.5 92 29-121 3-94 (96)
8 1c20_A DEAD ringer protein; DN 99.9 2E-26 6.7E-31 193.4 9.2 91 32-122 21-112 (128)
9 2li6_A SWI/SNF chromatin-remod 99.9 2.8E-26 9.6E-31 189.4 7.3 98 24-127 10-108 (116)
10 1kkx_A Transcription regulator 99.9 6.5E-26 2.2E-30 189.0 8.7 90 26-120 11-101 (123)
11 2kk0_A AT-rich interactive dom 99.9 8.9E-26 3E-30 193.3 8.9 89 33-121 34-123 (145)
12 2co9_A Thymus high mobility gr 99.9 9.4E-23 3.2E-27 164.4 12.5 88 237-324 8-96 (102)
13 2eqz_A High mobility group pro 99.9 2E-22 7E-27 157.4 10.7 77 238-314 7-86 (86)
14 1k99_A Upstream binding factor 99.9 2.9E-22 9.9E-27 160.8 8.7 83 238-320 2-85 (99)
15 2lhj_A High mobility group pro 99.9 1.5E-22 5.1E-27 161.7 4.4 84 233-316 9-95 (97)
16 1cg7_A Protein (NON histone pr 99.9 2.8E-22 9.6E-27 158.9 5.7 82 236-317 10-92 (93)
17 1hme_A High mobility group pro 99.9 6.3E-22 2.1E-26 151.1 7.3 75 241-315 1-76 (77)
18 2crj_A SWI/SNF-related matrix- 99.9 2.6E-21 8.9E-26 153.0 10.2 80 241-320 2-82 (92)
19 1wgf_A Upstream binding factor 99.8 5.8E-22 2E-26 156.2 5.2 77 235-311 9-86 (90)
20 2cs1_A PMS1 protein homolog 1; 99.8 3.9E-21 1.3E-25 152.0 9.9 80 241-320 2-82 (92)
21 1aab_A High mobility group pro 99.8 1E-21 3.5E-26 152.2 5.4 76 241-316 2-80 (83)
22 2e6o_A HMG box-containing prot 99.8 2.7E-21 9.1E-26 151.4 7.4 76 239-314 10-86 (87)
23 1hry_A Human SRY; DNA, DNA-bin 99.8 4.3E-21 1.5E-25 146.1 6.8 73 243-315 1-74 (76)
24 3nm9_A HMG-D, high mobility gr 99.8 1.5E-20 5E-25 142.3 9.5 71 244-316 1-72 (73)
25 2gzk_A Sex-determining region 99.8 3.9E-20 1.3E-24 159.7 10.6 77 239-315 81-158 (159)
26 1ckt_A High mobility group 1 p 99.8 2.2E-20 7.5E-25 140.2 7.5 68 246-313 1-71 (71)
27 1wxl_A Single-strand recogniti 99.8 1.7E-20 5.7E-25 142.0 6.7 71 244-316 1-72 (73)
28 1wz6_A HMG-box transcription f 99.8 1.4E-20 4.9E-25 145.4 5.1 76 242-317 3-79 (82)
29 1v64_A Nucleolar transcription 99.8 8.4E-20 2.9E-24 148.7 9.8 78 238-319 8-87 (108)
30 4a3n_A Transcription factor SO 99.8 3.3E-20 1.1E-24 139.1 6.6 70 245-314 1-71 (71)
31 1j46_A SRY, sex-determining re 99.8 5.1E-20 1.7E-24 143.4 7.8 77 243-319 1-78 (85)
32 1l8y_A Upstream binding factor 99.8 9.8E-20 3.3E-24 143.6 8.4 76 245-320 3-78 (91)
33 2yrq_A High mobility group pro 99.8 1.4E-19 4.9E-24 158.4 9.8 94 217-316 78-172 (173)
34 1gt0_D Transcription factor SO 99.8 9.5E-20 3.3E-24 140.0 7.5 74 245-318 1-75 (80)
35 4euw_A Transcription factor SO 99.8 8.7E-20 3E-24 148.1 7.6 79 240-318 23-102 (106)
36 3fgh_A Transcription factor A, 99.8 1.6E-19 5.6E-24 134.3 8.2 66 245-313 1-66 (67)
37 3f27_D Transcription factor SO 99.8 9.5E-20 3.2E-24 140.9 6.9 75 243-317 3-78 (83)
38 3u2b_C Transcription factor SO 99.8 1.5E-19 5E-24 138.5 6.8 73 245-317 1-74 (79)
39 2lef_A LEF-1 HMG, protein (lym 99.8 2.6E-19 8.8E-24 139.6 7.6 73 245-317 1-74 (86)
40 1i11_A Transcription factor SO 99.8 1.7E-19 5.8E-24 139.0 5.9 75 244-318 2-77 (81)
41 1v63_A Nucleolar transcription 99.8 2E-18 6.9E-23 138.9 10.5 76 243-320 5-81 (101)
42 2yrq_A High mobility group pro 99.7 3.6E-18 1.2E-22 149.5 10.2 81 236-316 5-88 (173)
43 2d7l_A WD repeat and HMG-box D 99.7 6.4E-18 2.2E-22 130.8 6.6 62 242-303 1-64 (81)
44 2yuk_A Myeloid/lymphoid or mix 99.7 6.1E-19 2.1E-23 139.0 -0.4 68 238-309 14-84 (90)
45 3tq6_A Transcription factor A, 99.7 1.7E-18 5.9E-23 156.8 2.3 77 239-318 107-183 (214)
46 2cto_A Novel protein; high mob 99.7 9.8E-18 3.4E-22 133.0 5.8 70 240-311 4-77 (93)
47 3tmm_A Transcription factor A, 99.7 1.8E-18 6.3E-23 159.0 1.3 78 238-318 138-215 (238)
48 3tmm_A Transcription factor A, 99.7 2.2E-17 7.4E-22 151.9 7.8 80 239-318 34-114 (238)
49 3tq6_A Transcription factor A, 99.7 5.8E-17 2E-21 146.8 8.8 76 243-318 6-82 (214)
50 2gzk_A Sex-determining region 99.6 4.4E-15 1.5E-19 127.9 7.5 72 244-315 2-74 (159)
51 1ity_A TRF1; helix-turn-helix, 79.4 1.9 6.5E-05 31.0 3.9 41 66-116 20-60 (69)
52 1gvd_A MYB proto-oncogene prot 78.7 1.9 6.5E-05 29.1 3.5 39 66-116 13-51 (52)
53 2dim_A Cell division cycle 5-l 76.0 2.5 8.5E-05 30.4 3.6 39 66-116 19-57 (70)
54 1guu_A C-MYB, MYB proto-oncoge 74.6 3 0.0001 28.0 3.5 39 66-116 13-51 (52)
55 1x41_A Transcriptional adaptor 72.8 3 0.0001 29.2 3.2 38 67-116 19-56 (60)
56 2d9a_A B-MYB, MYB-related prot 71.9 3.8 0.00013 28.4 3.6 39 66-116 18-56 (60)
57 1w0t_A Telomeric repeat bindin 70.3 4.7 0.00016 27.3 3.7 40 66-115 12-51 (53)
58 2elk_A SPCC24B10.08C protein; 63.9 6.8 0.00023 27.1 3.6 39 66-115 19-57 (58)
59 3sjm_A Telomeric repeat-bindin 62.2 8.6 0.00029 27.3 3.9 40 66-115 21-60 (64)
60 2yum_A ZZZ3 protein, zinc fing 60.5 8.8 0.0003 27.8 3.8 47 66-119 18-64 (75)
61 2cu7_A KIAA1915 protein; nucle 52.8 13 0.00045 26.7 3.6 41 66-119 19-59 (72)
62 2din_A Cell division cycle 5-l 51.9 17 0.00059 25.5 4.1 39 67-119 20-58 (66)
63 2k9n_A MYB24; R2R3 domain, DNA 50.0 14 0.00048 28.6 3.6 39 66-116 11-49 (107)
64 2yus_A SWI/SNF-related matrix- 46.4 15 0.00053 27.1 3.2 35 66-113 28-62 (79)
65 1gv2_A C-MYB, MYB proto-oncoge 44.4 18 0.00062 27.6 3.4 39 66-116 14-52 (105)
66 2lpy_A Matrix protein P10; GAG 43.4 69 0.0023 25.9 6.8 80 33-119 6-94 (124)
67 2qgu_A Probable signal peptide 42.5 16 0.00056 31.9 3.3 47 270-316 70-119 (211)
68 2k9n_A MYB24; R2R3 domain, DNA 35.0 38 0.0013 26.0 4.0 41 66-119 63-103 (107)
69 1h8a_C AMV V-MYB, MYB transfor 35.0 34 0.0012 27.1 3.8 40 65-116 36-75 (128)
70 1gv2_A C-MYB, MYB proto-oncoge 33.9 33 0.0011 26.1 3.4 38 65-115 65-102 (105)
71 1bax_A M-PMV MA, M-PMV matrix 33.4 31 0.0011 26.6 3.1 53 35-94 9-64 (94)
72 3ukx_C Bimax2 peptide; arm rep 31.8 32 0.0011 20.0 2.2 7 243-249 17-23 (28)
73 2o37_A Protein SIS1; HSP40, J- 30.2 74 0.0025 23.6 4.8 36 259-294 27-65 (92)
74 2do5_A Splicing factor 3B subu 29.7 45 0.0015 22.8 3.0 28 32-59 29-56 (58)
75 2ltp_A Nuclear receptor corepr 34.8 12 0.00041 28.3 0.0 30 85-119 37-66 (89)
76 3zqc_A MYB3; transcription-DNA 28.3 42 0.0014 26.8 3.3 38 66-116 64-101 (131)
77 2cqr_A RSGI RUH-043, DNAJ homo 27.4 37 0.0013 24.7 2.5 41 67-116 29-69 (73)
78 2cqq_A RSGI RUH-037, DNAJ homo 27.0 65 0.0022 23.3 3.8 42 66-117 18-59 (72)
79 2lo0_A Uncharacterized protein 26.6 30 0.001 25.6 1.9 22 26-48 32-53 (75)
80 1h8a_C AMV V-MYB, MYB transfor 24.4 57 0.0019 25.8 3.4 37 66-115 89-125 (128)
81 3osg_A MYB21; transcription-DN 24.3 62 0.0021 25.6 3.6 38 66-116 21-58 (126)
82 3zqc_A MYB3; transcription-DNA 24.2 52 0.0018 26.2 3.1 39 66-116 12-50 (131)
83 2och_A Hypothetical protein DN 24.1 95 0.0032 21.7 4.2 38 259-296 27-68 (73)
84 1fex_A TRF2-interacting telome 22.2 88 0.003 21.6 3.6 46 66-115 12-58 (59)
85 2yua_A Williams-beuren syndrom 21.9 1.4E+02 0.0048 22.3 5.1 36 259-294 36-77 (99)
86 1hdj_A Human HSP40, HDJ-1; mol 21.8 1.6E+02 0.0056 20.6 5.2 35 259-293 22-61 (77)
87 1h89_C C-MYB, MYB proto-oncoge 21.5 75 0.0026 26.0 3.7 38 66-115 68-105 (159)
88 2ckx_A NGTRF1, telomere bindin 20.4 1.1E+02 0.0036 22.8 3.9 40 66-115 10-51 (83)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.95 E-value=9.9e-29 Score=201.30 Aligned_cols=101 Identities=28% Similarity=0.471 Sum_probs=93.6
Q ss_pred CChHHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHH
Q 020330 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (327)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y 110 (327)
++++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+|++.||++++++++++.|+++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 478999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhcccCCCCCCC
Q 020330 111 LTLLYHYEQVHFFKMQGPPCVPS 133 (327)
Q Consensus 111 ~k~L~~yE~~~~~~~~~~~~~p~ 133 (327)
.+||++||+ ++.++++.+.+++
T Consensus 82 ~k~L~~yE~-~~~~~~~~~~p~~ 103 (107)
T 1ig6_A 82 ERLILPYER-FIKGEEDKPLPPI 103 (107)
T ss_dssp HHHTTTTHH-HHHHHTSSSSCTT
T ss_pred HHHHHHHHH-HHcCCCCCCCCCC
Confidence 999999999 5567766666553
No 2
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.94 E-value=1.5e-27 Score=197.34 Aligned_cols=96 Identities=26% Similarity=0.527 Sum_probs=90.8
Q ss_pred CCCcccCChHHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHH
Q 020330 26 SHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFV 105 (327)
Q Consensus 26 ~~e~~~~~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~ 105 (327)
+.|+.++++..|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++|+.+++|.+|++.||++++ +++++.
T Consensus 4 ele~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~ 82 (117)
T 2jrz_A 4 ELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSL 82 (117)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999977 789999
Q ss_pred HHHHHHHhhhhhhhhhh
Q 020330 106 LRKHYLTLLYHYEQVHF 122 (327)
Q Consensus 106 Lk~~Y~k~L~~yE~~~~ 122 (327)
||.+|.+||++||++..
T Consensus 83 Lk~~Y~k~L~~yE~~~~ 99 (117)
T 2jrz_A 83 LRSHYERIVYPYEMYQS 99 (117)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999543
No 3
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=2.6e-27 Score=197.24 Aligned_cols=97 Identities=26% Similarity=0.465 Sum_probs=91.8
Q ss_pred CCCCCcccCChHHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHH
Q 020330 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (327)
Q Consensus 24 ~~~~e~~~~~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s 103 (327)
+.+.|+.+++++.|+++|.+||+.+|++|++|+|+|++||||+||++|+++|||++||.+++|.+|++.||++++ ++++
T Consensus 4 Lnele~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~ 82 (122)
T 2eqy_A 4 GSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVG 82 (122)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCC-CcHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999999999975 5688
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 020330 104 FVLRKHYLTLLYHYEQVH 121 (327)
Q Consensus 104 ~~Lk~~Y~k~L~~yE~~~ 121 (327)
+.||++|.+||++||++.
T Consensus 83 ~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 83 SHIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999943
No 4
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.94 E-value=3.2e-27 Score=196.15 Aligned_cols=91 Identities=22% Similarity=0.410 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHH
Q 020330 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (327)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y 110 (327)
.....|+++|.+||+.+|++| ++|+|+|++||||+||.+|+++|||++||.+++|++|+..||||++++++++.||.+|
T Consensus 11 ~~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y 90 (121)
T 2rq5_A 11 GPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAY 90 (121)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH
Confidence 356789999999999999999 5999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhh
Q 020330 111 LTLLYHYEQVHF 122 (327)
Q Consensus 111 ~k~L~~yE~~~~ 122 (327)
.+||++||++.-
T Consensus 91 ~k~L~~YE~~~~ 102 (121)
T 2rq5_A 91 CQYLLSYDSLSP 102 (121)
T ss_dssp HTTHHHHHHCCH
T ss_pred HHHhHHHHCcCH
Confidence 999999999543
No 5
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.94 E-value=6.1e-27 Score=195.80 Aligned_cols=97 Identities=30% Similarity=0.488 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHH
Q 020330 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (327)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y 110 (327)
.+++.|+++|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++|+.+++|.+|++.||++. ++++++.||++|
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~Y 98 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQY 98 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHHH
Confidence 467789999999999999999 799999999999999999999999999999999999999999996 478999999999
Q ss_pred HHhhhhhhhhhhhcccCCC
Q 020330 111 LTLLYHYEQVHFFKMQGPP 129 (327)
Q Consensus 111 ~k~L~~yE~~~~~~~~~~~ 129 (327)
.+||++||+++..++..++
T Consensus 99 ~k~L~~yE~~~~~g~~~p~ 117 (125)
T 2cxy_A 99 IQYLFAFECKIERGEEPPP 117 (125)
T ss_dssp HHHTHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCh
Confidence 9999999999888875443
No 6
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.94 E-value=2.8e-27 Score=192.59 Aligned_cols=97 Identities=26% Similarity=0.484 Sum_probs=91.4
Q ss_pred CCCCCcccCChHHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHH
Q 020330 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSAS 103 (327)
Q Consensus 24 ~~~~e~~~~~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s 103 (327)
+.+.++.+++++.|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++|+.+++|.+|+..||+|++ ++++
T Consensus 6 L~el~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~ 84 (107)
T 2lm1_A 6 LNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVG 84 (107)
T ss_dssp SCSSCCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHH
T ss_pred hhhccCCchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHH
Confidence 456677788999999999999999999999999999999999999999999999999999999999999999975 7899
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 020330 104 FVLRKHYLTLLYHYEQVH 121 (327)
Q Consensus 104 ~~Lk~~Y~k~L~~yE~~~ 121 (327)
+.||++|.+||++||++.
T Consensus 85 ~~lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 85 ATLKAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999954
No 7
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=189.04 Aligned_cols=92 Identities=35% Similarity=0.597 Sum_probs=86.7
Q ss_pred cccCChHHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHH
Q 020330 29 DVSKDPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRK 108 (327)
Q Consensus 29 ~~~~~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~ 108 (327)
+.+++++.|+++|.+||+.+|+++++|+|+|++||||+||.+|+++|||++|+.+++|.+|++.||+++++ ++++.||+
T Consensus 3 ~~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~ 81 (96)
T 2jxj_A 3 LGSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKS 81 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999876 57889999
Q ss_pred HHHHhhhhhhhhh
Q 020330 109 HYLTLLYHYEQVH 121 (327)
Q Consensus 109 ~Y~k~L~~yE~~~ 121 (327)
+|.+||++||++.
T Consensus 82 ~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 82 HYERILYPYELFQ 94 (96)
T ss_dssp HHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999853
No 8
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.93 E-value=2e-26 Score=193.44 Aligned_cols=91 Identities=33% Similarity=0.511 Sum_probs=88.3
Q ss_pred CChHHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHH
Q 020330 32 KDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHY 110 (327)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y 110 (327)
++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++|+.+++|.+|+..||++++++++++.||++|
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y 100 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 689999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhh
Q 020330 111 LTLLYHYEQVHF 122 (327)
Q Consensus 111 ~k~L~~yE~~~~ 122 (327)
.+||++||+++.
T Consensus 101 ~k~L~~yE~~~~ 112 (128)
T 1c20_A 101 MKYLYPYECEKK 112 (128)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999764
No 9
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-26 Score=189.42 Aligned_cols=98 Identities=26% Similarity=0.395 Sum_probs=90.0
Q ss_pred CCCCCcccCChHHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcH
Q 020330 24 LSSHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSA 102 (327)
Q Consensus 24 ~~~~e~~~~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~ 102 (327)
+.+.|...++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+|+..||+++
T Consensus 10 ln~~e~~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~----- 84 (116)
T 2li6_A 10 KISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD----- 84 (116)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----
Confidence 56678888899999999999999999999 799999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccC
Q 020330 103 SFVLRKHYLTLLYHYEQVHFFKMQG 127 (327)
Q Consensus 103 s~~Lk~~Y~k~L~~yE~~~~~~~~~ 127 (327)
++.|+.+|.+||++||+ |+.+.++
T Consensus 85 ~~~Lr~~Y~k~L~~yE~-~~~~~~g 108 (116)
T 2li6_A 85 YQQLESIYFRILLPYER-HMISQEG 108 (116)
T ss_dssp TTHHHHHHHHHHSHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH-HHhCccc
Confidence 45899999999999999 5555443
No 10
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.92 E-value=6.5e-26 Score=188.98 Aligned_cols=90 Identities=24% Similarity=0.393 Sum_probs=83.5
Q ss_pred CCCcccCChHHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHH
Q 020330 26 SHEDVSKDPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASF 104 (327)
Q Consensus 26 ~~e~~~~~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~ 104 (327)
.+++.+++++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++||.+++|.+|++.||+++ ++
T Consensus 11 ~~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~ 85 (123)
T 1kkx_A 11 HHGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQ 85 (123)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HH
T ss_pred ccCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HH
Confidence 467888999999999999999999999 799999999999999999999999999999999999999999997 67
Q ss_pred HHHHHHHHhhhhhhhh
Q 020330 105 VLRKHYLTLLYHYEQV 120 (327)
Q Consensus 105 ~Lk~~Y~k~L~~yE~~ 120 (327)
.||++|.+||++||++
T Consensus 86 ~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 86 QLESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999993
No 11
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.92 E-value=8.9e-26 Score=193.26 Aligned_cols=89 Identities=37% Similarity=0.614 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHhhcCCCC-CCCeeCCeecchhhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHH
Q 020330 33 DPIVFWDTLRRFHFIMGTKF-MIPVIGGKELDLHVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYL 111 (327)
Q Consensus 33 ~~~~F~~~L~~F~~~~G~~~-~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~ 111 (327)
+++.|++.|.+||+.+|+++ ++|+|+|++||||+||.+|+++|||++|+.+++|.+|+..||++.+++++++.||++|.
T Consensus 34 ~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~ 113 (145)
T 2kk0_A 34 KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYM 113 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 48999999999999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhh
Q 020330 112 TLLYHYEQVH 121 (327)
Q Consensus 112 k~L~~yE~~~ 121 (327)
+||++||+..
T Consensus 114 k~L~~yE~~~ 123 (145)
T 2kk0_A 114 KYLYPYECEK 123 (145)
T ss_dssp HHSSHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999964
No 12
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=9.4e-23 Score=164.39 Aligned_cols=88 Identities=26% Similarity=0.524 Sum_probs=82.5
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 237 RSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 315 (327)
Q Consensus 237 ~~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~ 315 (327)
++++++||++||||+||||||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|+.
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667899999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hcccccccC
Q 020330 316 RLKLRQGEG 324 (327)
Q Consensus 316 ~~k~~~~~~ 324 (327)
........+
T Consensus 88 ~~~~~~~~e 96 (102)
T 2co9_A 88 SLVSKSYTD 96 (102)
T ss_dssp HHTSSCCCC
T ss_pred hcccccccc
Confidence 887765544
No 13
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=157.37 Aligned_cols=77 Identities=34% Similarity=0.607 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 238 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 314 (327)
Q Consensus 238 ~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~--~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk 314 (327)
+++++||++||||+|||+||++++|++|+.+||+ . +.||+++||++|++|+++||++|+++|++++++|..+|.+|+
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4667899999999999999999999999999999 5 599999999999999999999999999999999999999994
No 14
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.87 E-value=2.9e-22 Score=160.80 Aligned_cols=83 Identities=24% Similarity=0.435 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020330 238 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 316 (327)
Q Consensus 238 ~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~ 316 (327)
+++++||++||||+|||+||++++|.+|+.++|+ ++.||+++||++|++||+++|++|+++|++++++|..+|.+|+..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999 999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 020330 317 LKLR 320 (327)
Q Consensus 317 ~k~~ 320 (327)
..+-
T Consensus 82 ~P~~ 85 (99)
T 1k99_A 82 HPDL 85 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 15
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.86 E-value=1.5e-22 Score=161.65 Aligned_cols=84 Identities=40% Similarity=0.666 Sum_probs=79.2
Q ss_pred cccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 020330 233 GRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRE 309 (327)
Q Consensus 233 ~kkk~~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~--~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e 309 (327)
.+++++++++||++||||+|||+||++++|.+|+.+||+ + +.||+++||++|++|++++|++|+++|++++++|..+
T Consensus 9 ~k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 88 (97)
T 2lhj_A 9 GVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYERE 88 (97)
T ss_dssp SCCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778999999999999999999999999999999 7 9999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 020330 310 LKEYKER 316 (327)
Q Consensus 310 ~~~yk~~ 316 (327)
|.+|+.+
T Consensus 89 ~~~y~~~ 95 (97)
T 2lhj_A 89 KAEYAQR 95 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999975
No 16
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.85 E-value=2.8e-22 Score=158.93 Aligned_cols=82 Identities=34% Similarity=0.614 Sum_probs=77.8
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 236 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 314 (327)
Q Consensus 236 k~~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk 314 (327)
+++++++||++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|++++|++|+++|++++++|..+|++|+
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred Hhc
Q 020330 315 ERL 317 (327)
Q Consensus 315 ~~~ 317 (327)
...
T Consensus 90 ~~~ 92 (93)
T 1cg7_A 90 ATL 92 (93)
T ss_dssp HHT
T ss_pred Hcc
Confidence 764
No 17
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.85 E-value=6.3e-22 Score=151.12 Aligned_cols=75 Identities=28% Similarity=0.547 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 315 (327)
Q Consensus 241 ~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~ 315 (327)
++||++||||+|||+||++++|.+++.+||+ ++.+|+++||++|++|++++|++|+++|+.++++|..+|++|++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 99999999999999999999999999999999999999999974
No 18
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.85 E-value=2.6e-21 Score=152.99 Aligned_cols=80 Identities=30% Similarity=0.561 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020330 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 319 (327)
Q Consensus 241 ~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k~ 319 (327)
.+||++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|+.....
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~ 81 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAY 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 5799999999999999999999999999999 999999999999999999999999999999999999999999986544
Q ss_pred c
Q 020330 320 R 320 (327)
Q Consensus 320 ~ 320 (327)
.
T Consensus 82 ~ 82 (92)
T 2crj_A 82 K 82 (92)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=5.8e-22 Score=156.21 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=72.2
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 020330 235 RRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELK 311 (327)
Q Consensus 235 kk~~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~ 311 (327)
++++++++||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|++++|++|+++|++++++|+++|.
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999999 9999999999999999999999999999999999987765
No 20
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.9e-21 Score=151.98 Aligned_cols=80 Identities=28% Similarity=0.313 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020330 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 319 (327)
Q Consensus 241 ~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k~ 319 (327)
..+|++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|++++|++|+++|++++++|+++|++|+.+...
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3689999999999999999999999999999 999999999999999999999999999999999999999999998654
Q ss_pred c
Q 020330 320 R 320 (327)
Q Consensus 320 ~ 320 (327)
.
T Consensus 82 ~ 82 (92)
T 2cs1_A 82 M 82 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 21
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.84 E-value=1e-21 Score=152.22 Aligned_cols=76 Identities=33% Similarity=0.631 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020330 241 RGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 316 (327)
Q Consensus 241 ~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~--~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~ 316 (327)
++||++||||+|||+||++++|.+|+.+||+ + +.||+++||++|++|++++|++|+++|++++++|..+|.+|+..
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999 5 59999999999999999999999999999999999999999764
No 22
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=151.41 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 239 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 314 (327)
Q Consensus 239 k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk 314 (327)
++++||++||||+||||||++++|.+|+.+||+ ++.||+++||++|++|+++||++|+++|++++++|.+++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 567899999999999999999999999999999 9999999999999999999999999999999999999998885
No 23
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.83 E-value=4.3e-21 Score=146.09 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=69.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 243 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 315 (327)
Q Consensus 243 dp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~ 315 (327)
||++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999 99999999999999999999999999999999999999999864
No 24
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.83 E-value=1.5e-20 Score=142.35 Aligned_cols=71 Identities=24% Similarity=0.463 Sum_probs=68.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020330 244 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 316 (327)
Q Consensus 244 p~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~ 316 (327)
.++||||+|||+|||+++|++|+.+||+ ++.||+++||++|++|++ |++|+++|++++++|+++|++|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 999999999999999998 9999999999999999999999975
No 25
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.82 E-value=3.9e-20 Score=159.69 Aligned_cols=77 Identities=29% Similarity=0.558 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 239 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 315 (327)
Q Consensus 239 k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~ 315 (327)
++.+||++||||+|||+|||+++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|.+|+.
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999 99999999999999999999999999999999999999999985
No 26
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.81 E-value=2.2e-20 Score=140.25 Aligned_cols=68 Identities=32% Similarity=0.612 Sum_probs=65.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhCCC-Ch--HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 246 YPKPNRSGYNFFFAEKHYKLKSLYPN-RE--REFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEY 313 (327)
Q Consensus 246 ~PKrP~say~lF~~e~r~~vk~e~p~-~~--~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~y 313 (327)
+||||+|||+||++++|++++.+||+ +. .||+++||++|++|++++|++|+++|++++++|.++|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 54 9999999999999999999999999999999999999876
No 27
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.7e-20 Score=142.04 Aligned_cols=71 Identities=25% Similarity=0.572 Sum_probs=68.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020330 244 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKER 316 (327)
Q Consensus 244 p~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~ 316 (327)
|++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++| ++|++|+++|++++++|..+|.+|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6899999999999999999999999999 9999999999999999 899999999999999999999999864
No 28
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.81 E-value=1.4e-20 Score=145.39 Aligned_cols=76 Identities=17% Similarity=0.367 Sum_probs=72.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020330 242 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 317 (327)
Q Consensus 242 kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~ 317 (327)
.|+++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|+.+-
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 578999999999999999999999999999 9999999999999999999999999999999999999999997654
No 29
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=8.4e-20 Score=148.73 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=72.9
Q ss_pred CCCCCCCCCC-CCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 238 SKRRGDPSYP-KPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 315 (327)
Q Consensus 238 ~k~~kdp~~P-KrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~ 315 (327)
.++.+|+++| |||+|||+|||+++|.+|+ + ++.||+++||++|++|+++||++|+++|++++++|+.+|.+|+.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566899999 9999999999999999988 5 88999999999999999999999999999999999999999998
Q ss_pred hccc
Q 020330 316 RLKL 319 (327)
Q Consensus 316 ~~k~ 319 (327)
.+..
T Consensus 84 ~~~~ 87 (108)
T 1v64_A 84 SLPE 87 (108)
T ss_dssp HSCH
T ss_pred hCCH
Confidence 7654
No 30
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.80 E-value=3.3e-20 Score=139.05 Aligned_cols=70 Identities=17% Similarity=0.375 Sum_probs=62.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 245 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYK 314 (327)
Q Consensus 245 ~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk 314 (327)
++||||+|||+||++++|.+++.++|+ ++.+|+++||++|++|++++|++|+++|++++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 479999999999999999999999999 9999999999999999999999999999999999999999986
No 31
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.80 E-value=5.1e-20 Score=143.41 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020330 243 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKL 319 (327)
Q Consensus 243 dp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k~ 319 (327)
.|++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|++++|++|+++|++++++|..+|++|+.+.+.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr 78 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRR 78 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCC
Confidence 37899999999999999999999999999 999999999999999999999999999999999999999999876543
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.80 E-value=9.8e-20 Score=143.64 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=72.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 020330 245 SYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLR 320 (327)
Q Consensus 245 ~~PKrP~say~lF~~e~r~~vk~e~p~~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k~~ 320 (327)
++||||+|||+||+++.|..++.++|+.+.||+|+||++|++|+++||++|+++|.+||++|+++|.+|+......
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~ 78 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAAT 78 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999876653
No 33
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=158.39 Aligned_cols=94 Identities=26% Similarity=0.496 Sum_probs=83.1
Q ss_pred CcccccCCCCCCcccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHH
Q 020330 217 DVGAIIPYTPNSKRRYGRRRRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVY 295 (327)
Q Consensus 217 ~~~~~~~~~~~~~~r~~kkk~~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y 295 (327)
|..++..|.+...+ ++++.+||++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|
T Consensus 78 y~~e~~~y~~~~~~------~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y 151 (173)
T 2yrq_A 78 YEREMKTYIPPKGE------TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY 151 (173)
T ss_dssp THHHHHHCCCCCCC------SSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred HHHHhhhhhhhhhh------hcccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45556666655431 23456799999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 020330 296 QNIGLKDKERYNRELKEYKER 316 (327)
Q Consensus 296 ~e~a~~dkery~~e~~~yk~~ 316 (327)
+++|++++++|+.+|++|+.+
T Consensus 152 ~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 152 EKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999864
No 34
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.79 E-value=9.5e-20 Score=140.04 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=70.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020330 245 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 318 (327)
Q Consensus 245 ~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k 318 (327)
++||||+|||+||++++|.+|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|+..-+
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 75 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 479999999999999999999999999 99999999999999999999999999999999999999999986543
No 35
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.79 E-value=8.7e-20 Score=148.06 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020330 240 RRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 318 (327)
Q Consensus 240 ~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k 318 (327)
..+++++||||+|||+||++++|++++.++|+ ++.+|+++||++|++|+++||++|+++|++++++|+++|++|+-+-+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Pr 102 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPR 102 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC---
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCC
Confidence 35689999999999999999999999999999 99999999999999999999999999999999999999999986543
No 36
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=134.28 Aligned_cols=66 Identities=36% Similarity=0.628 Sum_probs=63.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 245 SYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEY 313 (327)
Q Consensus 245 ~~PKrP~say~lF~~e~r~~vk~e~p~~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~y 313 (327)
++||||+|||+||++++|.+++.+|| .+|+++||++|++|++++|++|+++|++++++|+++|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999998887 6999999999999999999999999999999999999998
No 37
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.79 E-value=9.5e-20 Score=140.90 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=68.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020330 243 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 317 (327)
Q Consensus 243 dp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~ 317 (327)
.+++||||+|||+||++++|..|+.+||+ ++.+|+++||++|++|++++|++|+++|++++++|..+|++|+-.-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 78 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRP 78 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 46789999999999999999999999999 9999999999999999999999999999999999999999997643
No 38
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=1.5e-19 Score=138.48 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=69.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020330 245 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 317 (327)
Q Consensus 245 ~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~ 317 (327)
++||||+|||+||++++|++|+.++|+ ++.+|+++||++|++|++++|++|+++|++++++|..++++|+-+-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~P 74 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRP 74 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCC
Confidence 579999999999999999999999999 9999999999999999999999999999999999999999997543
No 39
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=2.6e-19 Score=139.62 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=69.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020330 245 SYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 317 (327)
Q Consensus 245 ~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~ 317 (327)
.+||||+||||||++++|.+|+.+||+ ++.||+++||++|++|++++|++|+++|+.++++|..+|++|+.+-
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD 74 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCC
Confidence 469999999999999999999999999 9999999999999999999999999999999999999999998543
No 40
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=1.7e-19 Score=139.02 Aligned_cols=75 Identities=13% Similarity=0.336 Sum_probs=67.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020330 244 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 318 (327)
Q Consensus 244 p~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k 318 (327)
+++||||+||||||++++|.+|+.++|+ ++.||+++||++|++|++++|++|+++|++++++|.+++++|+-+-+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr 77 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPR 77 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccC
Confidence 4689999999999999999999999999 99999999999999999999999999999999999999999987543
No 41
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.76 E-value=2e-18 Score=138.90 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=68.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 020330 243 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLKLR 320 (327)
Q Consensus 243 dp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k~~ 320 (327)
...+||||+|||+|||++++. ..++++ ++.||+++||++|++|+++||++|+++|++++++|+++|.+|+..+...
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 456899999999999999975 345566 7899999999999999999999999999999999999999999987654
No 42
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=149.48 Aligned_cols=81 Identities=31% Similarity=0.573 Sum_probs=76.2
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 236 RRSKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKE 312 (327)
Q Consensus 236 k~~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~---~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~ 312 (327)
++++.++||++||||+|||+||++++|.+|+.+||+ .+.||+++||++|++|+++||++|+++|+.++++|..+|.+
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344677899999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred HHHh
Q 020330 313 YKER 316 (327)
Q Consensus 313 yk~~ 316 (327)
|...
T Consensus 85 y~~~ 88 (173)
T 2yrq_A 85 YIPP 88 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 9763
No 43
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.4e-18 Score=130.80 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=59.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C-hHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 020330 242 GDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R-EREFTKMIGESWTNLSPEERKVYQNIGLKDK 303 (327)
Q Consensus 242 kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~-~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dk 303 (327)
.++++||||+||||||++++|.+|+.+||+ + +.||+++||++|++|+++||++|+++|+.+.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999 7 9999999999999999999999999999874
No 44
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.71 E-value=6.1e-19 Score=138.97 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 020330 238 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-R--EREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRE 309 (327)
Q Consensus 238 ~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~--~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e 309 (327)
.+.++||++||||+|||||||+++|++|+.+||+ . +.||+ ++|++|+++||++|+++|+++|++|+.+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3455799999999999999999999999999999 7 88888 9999999999999999999999999753
No 45
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.71 E-value=1.7e-18 Score=156.82 Aligned_cols=77 Identities=34% Similarity=0.543 Sum_probs=72.2
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020330 239 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 318 (327)
Q Consensus 239 k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k 318 (327)
+..+||++||||+|||+|||+++|.+|+.++| .+|+++||++|++|++++|++|+++|++++++|+.+|.+|++.+.
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~~ 183 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMI 183 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 44679999999999999999999999988877 499999999999999999999999999999999999999999873
No 46
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.8e-18 Score=132.99 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHH---HHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 020330 240 RRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMI---GESWTNLSPEERKVYQNIGLKDKERYNRELK 311 (327)
Q Consensus 240 ~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~l---ge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~ 311 (327)
...++++||||+||||||++++|++|+.+ + .+.||+++| |++|++|+++||++|+++|+++|++|++++.
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 34678999999999999999999999998 6 899999999 9999999999999999999999999998763
No 47
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.8e-18 Score=159.01 Aligned_cols=78 Identities=33% Similarity=0.536 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCCChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020330 238 SKRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 317 (327)
Q Consensus 238 ~k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~ 317 (327)
++..+||++||||+|||+|||+++|.+|+.+|| .+|+++||++|++|++++|++|+++|++++++|+.+|++|++++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p---~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~ 214 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP---QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 214 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH---HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344679999999999999999999999998887 49999999999999999999999999999999999999999987
Q ss_pred c
Q 020330 318 K 318 (327)
Q Consensus 318 k 318 (327)
.
T Consensus 215 ~ 215 (238)
T 3tmm_A 215 I 215 (238)
T ss_dssp H
T ss_pred c
Confidence 3
No 48
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=151.88 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020330 239 KRRGDPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERL 317 (327)
Q Consensus 239 k~~kdp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~ 317 (327)
....||++||||+|||+||++++|.+|+.+||+ ++.||+++||++|++|+++||++|+++|+.++++|+++|..|.+.+
T Consensus 34 ~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 34 SSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp -CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345789999999999999999999999999999 9999999999999999999999999999999999999999998655
Q ss_pred c
Q 020330 318 K 318 (327)
Q Consensus 318 k 318 (327)
.
T Consensus 114 ~ 114 (238)
T 3tmm_A 114 T 114 (238)
T ss_dssp C
T ss_pred C
Confidence 3
No 49
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.68 E-value=5.8e-17 Score=146.77 Aligned_cols=76 Identities=28% Similarity=0.463 Sum_probs=72.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020330 243 DPSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKERLK 318 (327)
Q Consensus 243 dp~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~~~k 318 (327)
.|++||||+|||+|||+++|.+|+.+||+ ++.||+++||++|++|+++||++|+++|..++++|+.+|.+|.+...
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~t 82 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 82 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 46789999999999999999999999999 99999999999999999999999999999999999999999986553
No 50
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.56 E-value=4.4e-15 Score=127.88 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020330 244 PSYPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWTNLSPEERKVYQNIGLKDKERYNRELKEYKE 315 (327)
Q Consensus 244 p~~PKrP~say~lF~~e~r~~vk~e~p~-~~~eisk~lge~Wk~Ls~eeK~~Y~e~a~~dkery~~e~~~yk~ 315 (327)
+++||||++|||+|+.+.+.+|+.+||+ .+.||+++||++|++|++++|++|+++|+.++++|..+|.+|..
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 74 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 5789999999999999999999999999 99999999999999999999999999999999999999999965
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=79.44 E-value=1.9 Score=31.00 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=30.6
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|...|. +.|..|+..|+|..- .+.+++..|..+|.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNNR---TSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSSC---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCCC---CHHHHHHHHHHHcCC
Confidence 46777877772 489999999986322 234899999999876
No 52
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=78.72 E-value=1.9 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.0
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|...| .+.|..||..|+- - ...+.+..|.++|.|
T Consensus 13 ~L~~~v~~~G-------~~~W~~Ia~~~~~--R---t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG-------PKRWSVIAKHLKG--R---IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC-------TTCHHHHHTTSTT--C---CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC-------cChHHHHHHHcCC--C---CHHHHHHHHHHHcCc
Confidence 4666777776 2479999999742 1 234899999999864
No 53
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.00 E-value=2.5 Score=30.44 Aligned_cols=39 Identities=10% Similarity=0.306 Sum_probs=29.0
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|...| .+.|..||..|+- -...+.+..|.++|.+
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~-----Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR-----KSAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT-----CCHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC-----CCHHHHHHHHHHHcCC
Confidence 4667777777 2589999999862 1234889999999875
No 54
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=74.58 E-value=3 Score=28.05 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=27.9
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|...|. ..|..||..|.- - ...+.+..|.++|.+
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~~--R---t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLPN--R---TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT--C---CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcCC--C---CHHHHHHHHHHHcCc
Confidence 46667777662 479999999742 1 234899999999864
No 55
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=72.80 E-value=3 Score=29.18 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=27.4
Q ss_pred hHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 67 Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
|...|...|- +.|..||..|+-- ...+.+.+|.++|.+
T Consensus 19 L~~~v~~~G~-------~~W~~Ia~~~~~R-----t~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 19 LLEAVMDCGF-------GNWQDVANQMCTK-----TKEECEKHYMKYFSG 56 (60)
T ss_dssp HHHHHHHTCT-------TCHHHHHHHHTTS-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCc-------CcHHHHHHHhCCC-----CHHHHHHHHHHHccC
Confidence 5566777762 4899999999531 233899999998863
No 56
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=71.85 E-value=3.8 Score=28.43 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=27.9
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|...| .+.|..||..|.- - ...+.+..|.++|.+
T Consensus 18 ~L~~~v~~~G-------~~~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFG-------QQDWKFLASHFPN--R---TDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTC-------TTCHHHHHHHCSS--S---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhC-------CCCHHHHHHHccC--C---CHHHHHHHHHHHcCC
Confidence 4566777776 2589999999742 1 233899999999864
No 57
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=70.32 E-value=4.7 Score=27.28 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=28.8
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~ 115 (327)
.|...|...| .+.|..|+..|+|..- .+.+++..|..+|.
T Consensus 12 ~L~~~v~~~G-------~~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 12 NLRSGVRKYG-------EGNWSKILLHYKFNNR---TSVMLKDRWRTMKK 51 (53)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSSC---CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHcCCCCC---CHHHHHHHHHHHHc
Confidence 4667777777 2489999999986422 23378999988773
No 58
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=63.86 E-value=6.8 Score=27.13 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=28.3
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~ 115 (327)
.|...|...| .+.|..||..|+...+ ..+.+.+|.+++.
T Consensus 19 ~L~~~v~~~G-------~~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG-------LGNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT-------TTCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-------cCCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 5667788777 2489999999974322 2378889988764
No 59
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=62.16 E-value=8.6 Score=27.32 Aligned_cols=40 Identities=10% Similarity=0.314 Sum_probs=29.0
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~ 115 (327)
.|...|..+|- ..|..|+..+.|..- ...+++.-|..+|.
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR---TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC---CHHHHHHHHHHHhc
Confidence 46677888872 369999999877533 23379999988764
No 60
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.52 E-value=8.8 Score=27.78 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=31.6
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~yE~ 119 (327)
.|...|...|.-. +..+.|..||..|+-- ...+++.+|.+||..-..
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~R-----t~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGNR-----TAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSSS-----CHHHHHHHHHHHHGGGST
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHh
Confidence 4566777777211 1125899999998632 233899999999987554
No 61
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=52.83 E-value=13 Score=26.71 Aligned_cols=41 Identities=5% Similarity=0.141 Sum_probs=29.7
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~yE~ 119 (327)
.|...|..+|- .|..||..|.-- ...++|.+|..||.....
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~R-----t~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGSR-----TVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSSS-----CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHh
Confidence 35566776663 899999987432 223899999999988655
No 62
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.90 E-value=17 Score=25.51 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=27.0
Q ss_pred hHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhhhhh
Q 020330 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (327)
Q Consensus 67 Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~yE~ 119 (327)
|...|...| +.|..||...| - ...+.+..|..+|.+--.
T Consensus 20 L~~~~~~~g--------~~W~~Ia~~~g---R---t~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 20 LLHLAKLMP--------TQWRTIAPIIG---R---TAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp HHHHHHHCT--------TCHHHHHHHHS---S---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--------CCHHHHhcccC---c---CHHHHHHHHHHHhChHhc
Confidence 445566555 27999999444 1 234899999999987644
No 63
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=50.01 E-value=14 Score=28.56 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=28.1
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|...|. ..|..||..|+-- .+.+.+..|.++|.+
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~R-----t~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMITR-----NPRQCRERWNNYINP 49 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTTS-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCCC-----CHHHHHHHHHHHHcc
Confidence 46677888774 5799999998521 234788888888764
No 64
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=46.41 E-value=15 Score=27.14 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=24.9
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTL 113 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~ 113 (327)
.|...|...| +.|..||..++-- ...+.+.+|.++
T Consensus 28 ~Ll~~v~~~G--------~~W~~IA~~v~~R-----T~~qcr~r~~~~ 62 (79)
T 2yus_A 28 LLLEALEMYK--------DDWNKVSEHVGSR-----TQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHSS--------SCHHHHHHHHSSC-----CHHHHHHHHTTS
T ss_pred HHHHHHHHhC--------CCHHHHHHHcCCC-----CHHHHHHHHHHh
Confidence 4566777777 4899999998732 233778888765
No 65
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=44.44 E-value=18 Score=27.64 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=27.4
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|...|. +.|..||..|.- - .+.+.+..|.++|.+
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~~--R---t~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLKG--R---IGKQCRERWHNHLNP 52 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTSTT--C---CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhcC--C---CHHHHHHHHHhccCC
Confidence 46677777775 479999998832 1 234788888888753
No 66
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=43.44 E-value=69 Score=25.92 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCchhhh---hcccchHHhHhhhc------CCCCCCcHH
Q 020330 33 DPIVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKV---VAEKKWREVGAVFK------FSPTTTSAS 103 (327)
Q Consensus 33 ~~~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V---~~~~~W~eV~~~l~------~p~~~~~~s 103 (327)
..+.|+..|+.++.++|..++ .=||-.+|..|.+.-=.-.. ..-..|..|++.|. -|....-..
T Consensus 6 ~~~~fi~~Lk~~LK~rGvkV~-------~k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~~~~~~~~~~~iP~~~ 78 (124)
T 2lpy_A 6 QHERYVEQLKQALKTRGVKVK-------YADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTA 78 (124)
T ss_dssp HHHHHHHHHHHHHHTTTCCCC-------HHHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHHHHHHTTCCSSCCTHH
T ss_pred HHHHHHHHHHHHHHHCCeeec-------HHHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHHHHHHHhCCCcCChhH
Confidence 457899999999999999873 34788888888753211111 33468999999883 233334445
Q ss_pred HHHHHHHHHhhhhhhh
Q 020330 104 FVLRKHYLTLLYHYEQ 119 (327)
Q Consensus 104 ~~Lk~~Y~k~L~~yE~ 119 (327)
+.+=+.=..+|...+.
T Consensus 79 ~~~W~LI~~~Le~~~~ 94 (124)
T 2lpy_A 79 FSYWNLIKELIDKKEV 94 (124)
T ss_dssp HHHHHHHHHHHHCSCS
T ss_pred HHHHHHHHHHHccccc
Confidence 5555555556665554
No 67
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=42.55 E-value=16 Score=31.89 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=37.4
Q ss_pred CC-ChHHHHH-HHHHHhhcCChHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 020330 270 PN-REREFTK-MIGESWTNLSPEERKVYQNIGLK-DKERYNRELKEYKER 316 (327)
Q Consensus 270 p~-~~~eisk-~lge~Wk~Ls~eeK~~Y~e~a~~-dkery~~e~~~yk~~ 316 (327)
|. .+..+++ .||..|+.+|+++|+.|.+.... ....|-..+.+|...
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 44 6666654 46899999999999999987776 566788999988853
No 68
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=35.04 E-value=38 Score=26.03 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=29.1
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~yE~ 119 (327)
.|...|..+| +.|..|+..|. .- ...+++..|..++..-..
T Consensus 63 ~L~~~~~~~G--------~~W~~Ia~~l~--gR---t~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 63 LLDQKYAEYG--------PKWNKISKFLK--NR---SDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHHHHHHTC--------SCHHHHHHHHS--SS---CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC--------cCHHHHHHHCC--CC---CHHHHHHHHHHHHhhHHH
Confidence 4667777777 37999999873 22 233799999988876443
No 69
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=35.02 E-value=34 Score=27.13 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=28.4
Q ss_pred hhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 65 ~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
-.|-..|...|. +.|..||..|+-- ...+.+..|.++|.+
T Consensus 36 ~~L~~~v~~~g~-------~~W~~Ia~~l~~R-----t~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 36 QRVIEHVQKYGP-------KRWSDIAKHLKGR-----IGKQCRERWHNHLNP 75 (128)
T ss_dssp HHHHHHHHHTCS-------CCHHHHHHHSSSC-----CHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhcCC-----cHHHHHHHHHHhccc
Confidence 356677877774 4799999998421 234788889888753
No 70
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=33.94 E-value=33 Score=26.11 Aligned_cols=38 Identities=13% Similarity=0.486 Sum_probs=26.4
Q ss_pred hhhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhh
Q 020330 65 HVLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (327)
Q Consensus 65 ~~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~ 115 (327)
..|...|...| +.|..|+..| |.- ...+++..|..+|.
T Consensus 65 ~~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 65 RIIYQAHKRLG--------NRWAEIAKLL--PGR---TDNAIKNHWNSTMR 102 (105)
T ss_dssp HHHHHHHHHHS--------SCHHHHHTTC--TTC---CHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC--------CCHHHHHHHc--CCC---CHHHHHHHHHHHHh
Confidence 34666777777 4799999876 322 22379999988764
No 71
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=33.36 E-value=31 Score=26.61 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeeCCeecchhhhHHHHHhcCchhhh---hcccchHHhHhhhc
Q 020330 35 IVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATTRGGYEKV---VAEKKWREVGAVFK 94 (327)
Q Consensus 35 ~~F~~~L~~F~~~~G~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V---~~~~~W~eV~~~l~ 94 (327)
..|+..|+.++.+||..+ +.-||..+|..|.+..=.--+ ..-..|..|++.|.
T Consensus 9 q~fi~~lk~lLk~RgIkV-------kk~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~ 64 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV-------KYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_pred hHHHHHHHHHHHHcCeee-------cHHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHH
Confidence 789999999999999987 335788888888774321111 22358999998876
No 72
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=31.77 E-value=32 Score=20.03 Aligned_cols=7 Identities=43% Similarity=0.553 Sum_probs=3.9
Q ss_pred CCCCCCC
Q 020330 243 DPSYPKP 249 (327)
Q Consensus 243 dp~~PKr 249 (327)
|..+||+
T Consensus 17 dddppkk 23 (28)
T 3ukx_C 17 DDDPPKK 23 (28)
T ss_dssp SSSCCSC
T ss_pred CCCchhh
Confidence 3456655
No 73
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=30.17 E-value=74 Score=23.56 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCC---ChHHHHHHHHHHhhcCChHHHHH
Q 020330 259 AEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERKV 294 (327)
Q Consensus 259 ~e~r~~vk~e~p~---~~~eisk~lge~Wk~Ls~eeK~~ 294 (327)
+..|...+.-||+ ...+..+.|.+.|..|++.++..
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence 4455567778998 35678899999999998765443
No 74
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.71 E-value=45 Score=22.85 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCeeCC
Q 020330 32 KDPIVFWDTLRRFHFIMGTKFMIPVIGG 59 (327)
Q Consensus 32 ~~~~~F~~~L~~F~~~~G~~~~~P~i~g 59 (327)
-.++..++.|+.|+.+.|+-+.-|.+.+
T Consensus 29 g~REElvdRLk~Y~~QtGi~lnkP~~~~ 56 (58)
T 2do5_A 29 GNREELVERLQSYTRQTGIVLNRPSGPS 56 (58)
T ss_dssp SCHHHHHHHHHHHHHHHCCCCCCTTCSC
T ss_pred ccHHHHHHHHHHHhhccceeecCCCCCC
Confidence 4689999999999999999987666543
No 75
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=34.83 E-value=12 Score=28.29 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=21.6
Q ss_pred chHHhHhhhcCCCCCCcHHHHHHHHHHHhhhhhhh
Q 020330 85 KWREVGAVFKFSPTTTSASFVLRKHYLTLLYHYEQ 119 (327)
Q Consensus 85 ~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~yE~ 119 (327)
.|..||..|+-- + ..+++.+|..+|..+..
T Consensus 37 ~W~~IA~~l~gR--t---~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 37 NWSAIARMVGSK--T---VSQCKNFYFNYKKRQNL 66 (89)
Confidence 699999987532 2 22789999998876543
No 76
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=28.30 E-value=42 Score=26.76 Aligned_cols=38 Identities=8% Similarity=0.301 Sum_probs=27.5
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|..+|+ .|..|+..|. .- ...+++..|..+|..
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~--gR---t~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP--GR---TDNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST--TC---CHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC--CC---CHHHHHHHHHHHHHH
Confidence 46677777874 7999999764 22 233799999998865
No 77
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.43 E-value=37 Score=24.75 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=26.5
Q ss_pred hHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 67 LYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 67 Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
|-..|..+|.- ..+.|..||..|+-- ...+++.+|..++..
T Consensus 29 L~~al~~~g~~----~~~rW~~IA~~vpGR-----T~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 29 LELALQQYPRG----SSDCWDKIARCVPSK-----SKEDCIARYKLLVSG 69 (73)
T ss_dssp HHHHHHHSCSS----SHHHHHHHGGGCSSS-----CHHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCC----CCchHHHHHHHcCCC-----CHHHHHHHHHHHHHc
Confidence 44556666521 236899999998622 233789999887643
No 78
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.05 E-value=65 Score=23.28 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=27.2
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYHY 117 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~y 117 (327)
.|-+.|..+++- ..++|..||..|| . ....++++|..++...
T Consensus 18 ~fe~al~~~p~~----t~~RW~~IA~~lg--R----t~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 18 QLTRSMVKFPGG----TPGRWEKIAHELG--R----SVTDVTTKAKQLKDSV 59 (72)
T ss_dssp HHHHHHHHSCTT----CTTHHHHHHHHHT--S----CHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCC----CCcHHHHHHHHhC--C----CHHHHHHHHHHHHHhc
Confidence 344555555432 1368999999986 1 2337888998886653
No 79
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=26.63 E-value=30 Score=25.58 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=16.8
Q ss_pred CCCcccCChHHHHHHHHHHHhhc
Q 020330 26 SHEDVSKDPIVFWDTLRRFHFIM 48 (327)
Q Consensus 26 ~~e~~~~~~~~F~~~L~~F~~~~ 48 (327)
+.+++ =+-+.||++|+.|+++|
T Consensus 32 sg~~v-l~TeeFW~DL~gFL~qR 53 (75)
T 2lo0_A 32 SGESV-VATEAFWDDLQGFLEQR 53 (75)
T ss_dssp CSSTT-TTSHHHHHHHHHHHHHH
T ss_pred hHHHH-HhHHHHHHHHHHHHHHh
Confidence 33443 36689999999999987
No 80
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=24.43 E-value=57 Score=25.75 Aligned_cols=37 Identities=14% Similarity=0.485 Sum_probs=25.9
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~ 115 (327)
.|...|...| +.|..|+..| |.- ...+++..|..+|.
T Consensus 89 ~L~~~~~~~G--------~~W~~Ia~~l--~gR---t~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 89 IIYQAHKRLG--------NRWAEIAKLL--PGR---TDNAVKNHWNSTMR 125 (128)
T ss_dssp HHHHHHHHHC--------SCHHHHGGGS--TTC---CHHHHHHHHHTTTT
T ss_pred HHHHHHHHHC--------cCHHHHHHHC--CCC---CHHHHHHHHHHHHh
Confidence 4666677776 4799999976 322 22379999988774
No 81
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=24.34 E-value=62 Score=25.56 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=26.5
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|...|...|. .|..||..|+-- .+.+.+..|.++|.+
T Consensus 21 ~L~~~v~~~G~--------~W~~Ia~~~~~R-----t~~qcr~Rw~~~l~p 58 (126)
T 3osg_A 21 MLKRAVAQHGS--------DWKMIAATFPNR-----NARQCRDRWKNYLAP 58 (126)
T ss_dssp HHHHHHHHHTT--------CHHHHHHTCTTC-----CHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCC--------CHHHHHHHcCCC-----CHHHHHHHHhhhccc
Confidence 46677777763 599999987421 233788888888853
No 82
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=24.18 E-value=52 Score=26.18 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=26.6
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLYH 116 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~~ 116 (327)
.|-..|...| .+.|..||..|+- - ...+.+..|.++|.+
T Consensus 12 ~L~~~v~~~g-------~~~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~p 50 (131)
T 3zqc_A 12 LIREYVKENG-------PQNWPRITSFLPN--R---SPKQCRERWFNHLDP 50 (131)
T ss_dssp HHHHHHHHHC-------SCCGGGGTTSCTT--S---CHHHHHHHHHHHTST
T ss_pred HHHHHHHHhC-------cCCHHHHHHHHCC--C---CHHHHHHHHhhccCc
Confidence 4556677766 2379999998842 1 234788888888854
No 83
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=24.06 E-value=95 Score=21.73 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCC---ChHHHHHHHHHHhhcCChHHHH-HHH
Q 020330 259 AEKHYKLKSLYPN---REREFTKMIGESWTNLSPEERK-VYQ 296 (327)
Q Consensus 259 ~e~r~~vk~e~p~---~~~eisk~lge~Wk~Ls~eeK~-~Y~ 296 (327)
+..|...+.-||+ ...+..+.|.+.|..|++.++. .|.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4455566777898 2357888999999999866554 443
No 84
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=22.22 E-value=88 Score=21.62 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=30.1
Q ss_pred hhHHHHHhcCch-hhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhh
Q 020330 66 VLYVEATTRGGY-EKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (327)
Q Consensus 66 ~Ly~~V~~~GG~-~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~ 115 (327)
.|+.-|...... ..|.-++.|.++++.. +|... -...|..|.++|.
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~-~~~Ht---wqSwRdRy~k~l~ 58 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSS-LTQHS---WQSLKDRYLKHLR 58 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSC-SSSCC---SHHHHHHHHHHTC
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhH-CCCCC---HHHHHHHHHHHcc
Confidence 466667666211 3688889999998832 34222 2369999999874
No 85
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.93 E-value=1.4e+02 Score=22.29 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCCC-C-----hHHHHHHHHHHhhcCChHHHHH
Q 020330 259 AEKHYKLKSLYPN-R-----EREFTKMIGESWTNLSPEERKV 294 (327)
Q Consensus 259 ~e~r~~vk~e~p~-~-----~~eisk~lge~Wk~Ls~eeK~~ 294 (327)
+..|...+.-||+ . ..+..+.|.+.|..|++.++..
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4455567778888 2 2578889999999999776543
No 86
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=21.83 E-value=1.6e+02 Score=20.62 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHHHhhCCC-C----hHHHHHHHHHHhhcCChHHHH
Q 020330 259 AEKHYKLKSLYPN-R----EREFTKMIGESWTNLSPEERK 293 (327)
Q Consensus 259 ~e~r~~vk~e~p~-~----~~eisk~lge~Wk~Ls~eeK~ 293 (327)
+..|...+.-||+ . ..+..+.|.+.|..|++.++.
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHH
Confidence 3445556677888 2 357888999999999877653
No 87
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=21.49 E-value=75 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=26.9
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhcCCCCCCcHHHHHHHHHHHhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFKFSPTTTSASFVLRKHYLTLLY 115 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~~p~~~~~~s~~Lk~~Y~k~L~ 115 (327)
.|...|...|. +.|..|+..|. .- ...+.+..|.++|.
T Consensus 68 ~L~~~v~~~g~-------~~W~~Ia~~l~--~R---t~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 68 RVIKLVQKYGP-------KRWSVIAKHLK--GR---IGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHHHHHCS-------CCHHHHHHTST--TC---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCc-------ccHHHHHHHcC--CC---CHHHHHHHHHHHhC
Confidence 46677777774 47999999873 21 23478889988874
No 88
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=20.42 E-value=1.1e+02 Score=22.79 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=27.4
Q ss_pred hhHHHHHhcCchhhhhcccchHHhHhhhc--CCCCCCcHHHHHHHHHHHhhh
Q 020330 66 VLYVEATTRGGYEKVVAEKKWREVGAVFK--FSPTTTSASFVLRKHYLTLLY 115 (327)
Q Consensus 66 ~Ly~~V~~~GG~~~V~~~~~W~eV~~~l~--~p~~~~~~s~~Lk~~Y~k~L~ 115 (327)
.|-..|..+|. ..|..|+.... |+.-+ ...||..|.++|.
T Consensus 10 ~L~~gv~k~G~-------g~W~~I~~~~~~~~~~RT---~~~lKdrWrnllk 51 (83)
T 2ckx_A 10 ALVEAVEHLGT-------GRWRDVKMRAFDNADHRT---YVDLKDKWKTLVH 51 (83)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHHCTTCTTSC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CCcHHHHHhhccccCCCC---HHHHHHHHHHHHH
Confidence 35566777773 48999999743 44322 3379999998875
Done!