Query 020331
Match_columns 327
No_of_seqs 258 out of 1399
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13883 Pyrid_oxidase_2: Pyri 100.0 3.2E-31 7E-36 232.5 13.8 146 85-234 3-169 (170)
2 COG0748 HugZ Putative heme iro 99.9 8.6E-24 1.9E-28 191.9 -0.8 226 91-325 8-240 (245)
3 PF10615 DUF2470: Protein of u 99.9 9.5E-22 2.1E-26 152.8 7.3 80 238-320 2-83 (83)
4 KOG3374 Cellular repressor of 99.8 8.2E-18 1.8E-22 144.2 12.3 158 74-236 31-208 (210)
5 PRK03467 hypothetical protein; 99.7 1.1E-16 2.5E-21 135.7 16.4 126 89-220 7-137 (144)
6 TIGR03668 Rv0121_F420 PPOX cla 99.6 7.3E-14 1.6E-18 119.0 15.4 121 90-213 3-138 (141)
7 TIGR03667 Rv3369 PPOX class pr 99.5 7.8E-13 1.7E-17 111.1 14.6 117 90-211 5-129 (130)
8 PF01243 Pyridox_oxidase: Pyri 99.5 6E-13 1.3E-17 103.0 12.6 86 90-179 3-89 (89)
9 TIGR03666 Rv2061_F420 PPOX cla 99.5 1.4E-12 3E-17 110.0 15.3 112 94-210 7-127 (132)
10 TIGR03618 Rv1155_F420 PPOX cla 99.4 1.4E-11 3E-16 100.5 14.3 107 103-213 1-116 (117)
11 PF12900 Pyridox_ox_2: Pyridox 99.3 2E-10 4.3E-15 97.6 14.5 119 89-213 2-140 (143)
12 COG3787 Uncharacterized protei 99.1 1.4E-09 3.1E-14 89.5 12.4 125 90-220 3-132 (145)
13 COG3467 Predicted flavin-nucle 99.1 3.3E-09 7.1E-14 92.9 14.8 120 88-211 12-155 (166)
14 PRK05679 pyridoxamine 5'-phosp 99.1 5.8E-09 1.3E-13 93.6 15.5 120 92-217 20-170 (195)
15 COG0748 HugZ Putative heme iro 98.9 1.4E-10 3E-15 106.0 -1.3 142 84-234 81-229 (245)
16 COG3871 Uncharacterized stress 98.7 2E-07 4.3E-12 78.8 11.2 117 90-216 8-130 (145)
17 TIGR00558 pdxH pyridoxamine-ph 98.7 1.1E-06 2.3E-11 80.3 15.8 117 96-217 46-192 (217)
18 COG0259 PdxH Pyridoxamine-phos 98.5 2E-06 4.4E-11 76.5 13.5 133 71-217 26-189 (214)
19 PRK06733 hypothetical protein; 98.4 1.5E-05 3.3E-10 68.4 14.6 110 88-220 9-120 (151)
20 PLN03049 pyridoxine (pyridoxam 98.3 1.6E-05 3.4E-10 80.3 16.1 116 96-217 286-433 (462)
21 COG5015 Uncharacterized conser 98.3 2.5E-05 5.3E-10 64.0 12.5 114 91-214 3-120 (132)
22 PLN02918 pyridoxine (pyridoxam 97.9 0.0003 6.5E-09 72.1 14.8 115 97-217 369-515 (544)
23 TIGR00026 hi_GC_TIGR00026 deaz 97.8 0.00035 7.5E-09 57.4 11.2 87 100-197 8-100 (113)
24 PF04299 FMN_bind_2: Putative 97.7 0.0015 3.3E-08 57.3 14.0 120 89-212 12-169 (169)
25 PF04075 DUF385: Domain of unk 97.4 0.0021 4.5E-08 54.2 10.6 100 99-209 25-132 (132)
26 KOG2586 Pyridoxamine-phosphate 97.1 0.0011 2.5E-08 59.0 6.3 89 96-193 53-142 (228)
27 PF12766 Pyridox_oxase_2: Pyri 96.5 0.03 6.5E-07 45.0 9.8 75 97-175 18-99 (100)
28 COG2808 PaiB Transcriptional r 95.9 0.13 2.8E-06 46.1 11.2 101 88-191 11-134 (209)
29 COG3576 Predicted flavin-nucle 93.0 0.62 1.3E-05 41.1 8.5 116 91-216 33-153 (173)
30 PF04289 DUF447: Protein of un 74.4 11 0.00023 33.2 6.6 53 102-158 3-55 (177)
31 PF08922 DUF1905: Domain of un 33.2 1.6E+02 0.0035 22.3 5.9 57 92-154 22-80 (80)
32 COG2075 RPL24A Ribosomal prote 28.4 70 0.0015 23.7 2.9 33 116-149 15-47 (66)
33 PF10012 DUF2255: Uncharacteri 25.6 3.8E+02 0.0083 22.1 10.3 89 96-196 6-99 (116)
34 PF01613 Flavin_Reduct: Flavin 22.5 1.4E+02 0.0029 24.9 4.2 54 101-157 8-64 (154)
35 PRK14891 50S ribosomal protein 21.8 67 0.0015 27.0 2.0 30 119-149 19-48 (131)
36 PF10357 Kin17_mid: Domain of 21.5 93 0.002 26.1 2.8 34 250-283 54-94 (127)
37 PF13152 DUF3967: Protein of u 20.5 76 0.0016 20.4 1.6 15 69-83 6-20 (34)
No 1
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.97 E-value=3.2e-31 Score=232.50 Aligned_cols=146 Identities=42% Similarity=0.679 Sum_probs=113.1
Q ss_pred CCCcHHHHHHHHhcCCeEEEEeecC--CCCCcceEEEeeEE----EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC
Q 020331 85 RLPPLEEIRTVLDRSVRGMLSTFSQ--KYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 158 (327)
Q Consensus 85 rps~ae~ar~lL~~~~~~~LATv~~--~~dG~P~~S~v~y~----~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~ 158 (327)
....|+.||+|++..++|+|+|++. +.+|+|+++++.|+ .+.+|+|||++++++.|++||++||||||+|.+..
T Consensus 3 ~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~ 82 (170)
T PF13883_consen 3 REEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQ 82 (170)
T ss_dssp TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGG
T ss_pred hHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCC
Confidence 3457889999999999999999983 34899999999999 78889999999999999999999999999999865
Q ss_pred ---------CCC--cceEEEEEEEEEEecchhHHHHHHHHHHhCCCC-ccccC---CCeEEEEEEEeEEEEEecCccccc
Q 020331 159 ---------EDR--TDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF---GDFQFMRIEPKAVRYVSGVATALL 223 (327)
Q Consensus 159 ---------~~~--~~~rvtl~G~a~~v~~ee~~~l~~~y~~~~P~~-~~~~~---~df~l~rL~p~~v~~v~GFG~a~~ 223 (327)
++. +++||||.|++++|++++...++++|+++||++ .|.++ +||.||||+|++|+||||||++
T Consensus 83 ~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~-- 160 (170)
T PF13883_consen 83 GGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGA-- 160 (170)
T ss_dssp SSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS---
T ss_pred CCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCc--
Confidence 233 789999999999999888888999999999999 89999 9999999999999999999999
Q ss_pred CCccCChhhhh
Q 020331 224 GSGEFSKEEYQ 234 (327)
Q Consensus 224 ~~~~v~~~e~~ 234 (327)
+||+++||.
T Consensus 161 --~~i~~~~Y~ 169 (170)
T PF13883_consen 161 --AWISAEEYY 169 (170)
T ss_dssp --EEE-HHHHH
T ss_pred --eEeCHHHhc
Confidence 889999996
No 2
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.6e-24 Score=191.93 Aligned_cols=226 Identities=23% Similarity=0.245 Sum_probs=189.1
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC--CCCcceEEEE
Q 020331 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP--EDRTDLVITL 168 (327)
Q Consensus 91 ~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~--~~~~~~rvtl 168 (327)
-++.+++..++|.|+|.... +|.|++|.+++..|-+|++.++++.++.|++ +.+|||||++..+.+ ++.+.+|+++
T Consensus 8 na~~~l~~~~~~~l~~~~~~-~g~p~~sv~~~gid~~g~p~~~~~~~~~h~~-~~~d~r~sil~~~~g~~d~~~~~Rl~~ 85 (245)
T COG0748 8 NARHLLRSARLAALAGLEPV-TGVPFVSVVPVGIDIDGNPLILLSRLFPHTA-DEADPRCSILLGEPGKGDELALPRLTL 85 (245)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCceeeeccceeccCCCcceeEeeeccccc-cccChhhhheecCcCcCChhhccchhH
Confidence 48899999999999999764 8999999999999999999999999999999 999999999998887 7778899999
Q ss_pred EEEEEEecchh--HHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEecCcccccCCccCChhhhhcccCCcc-ccc
Q 020331 169 HGDATSVAEKD--KAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPI-AQF 244 (327)
Q Consensus 169 ~G~a~~v~~ee--~~~l~~~y~~~~P~~-~~~~~~df~l~rL~p~~v~~v~GFG~a~~~~~~v~~~e~~~A~pDpl-a~~ 244 (327)
.+.+..++.+. ...+...|..++|.+ .|.+.+||.+|+.++.+.....|++.- | ..+-.+| +..+. ...
T Consensus 86 e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~~~d~~iyis~~arh~~N~~~~p~-v--s~m~ied----ea~a~s~~~ 158 (245)
T COG0748 86 EIEAFRLEFDSVALATLRERGLPRASYAPLYVDDGDYYIYISEIARHARNLGFNPK-V--SVMFIED----EAKAKSAFA 158 (245)
T ss_pred HHHHHHhccchHHHhhhhhcCCcCCCcCceEecCCceEEEEehHHHHhhccCcCCc-h--hhheecC----chhhhhHHH
Confidence 99999987654 455667788888888 788999999999999987777777741 1 2222222 22333 344
Q ss_pred chhhHhhhhhcCHHHHHHHHHHhCCCCCCcE-EEEEeeCCCcEEEEcccCCeEEEEEcCCCCCCCHhHHHHHHHHHHHHh
Q 020331 245 SKPVASHMNRDHAEDTRIIVQHSTSIPVASA-YMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAA 323 (327)
Q Consensus 245 ~~~ii~HMN~dH~d~l~~~~~~~~~~~~~~a-~m~~vD~~G~~lr~~~~~~~~~~RipF~~pv~~~~e~r~~Lv~m~~~A 323 (327)
+.+++.|||+||.++...|++.++......+ +|.+||+.|+++.+...++...+|+.|++++.+.+|.+..|+.|++.+
T Consensus 159 r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~~~~d~~~~lV~l~~~~ 238 (245)
T COG0748 159 RKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYAISGDGRIALVGLAGGP 238 (245)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchhhccccchhHHHHHHhcCc
Confidence 6689999999999999999999987764433 399999999999997655567899999999999999999999999986
Q ss_pred hc
Q 020331 324 NS 325 (327)
Q Consensus 324 ~~ 325 (327)
+.
T Consensus 239 h~ 240 (245)
T COG0748 239 HG 240 (245)
T ss_pred cc
Confidence 64
No 3
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.85 E-value=9.5e-22 Score=152.84 Aligned_cols=80 Identities=38% Similarity=0.646 Sum_probs=66.1
Q ss_pred CCcccc-cchhhHhhhhhcCHHHHHHHHHHhCCCC-CCcEEEEEeeCCCcEEEEcccCCeEEEEEcCCCCCCCHhHHHHH
Q 020331 238 VDPIAQ-FSKPVASHMNRDHAEDTRIIVQHSTSIP-VASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKIL 315 (327)
Q Consensus 238 pDpla~-~~~~ii~HMN~dH~d~l~~~~~~~~~~~-~~~a~m~~vD~~G~~lr~~~~~~~~~~RipF~~pv~~~~e~r~~ 315 (327)
+||++. .+++||+|||+||.|++..||++|++++ +.+|+|++||++||+|++ ++...+||||++|+++++|+|.+
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~~~~e~r~~ 78 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHADDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVTDPEEARDA 78 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-HHHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---SHCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCCCHHHHHHH
Confidence 799995 8899999999999999999999999884 699999999999999999 33489999999999999999999
Q ss_pred HHHHH
Q 020331 316 IVEML 320 (327)
Q Consensus 316 Lv~m~ 320 (327)
||+|+
T Consensus 79 lV~ma 83 (83)
T PF10615_consen 79 LVEMA 83 (83)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99996
No 4
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=99.76 E-value=8.2e-18 Score=144.19 Aligned_cols=158 Identities=20% Similarity=0.320 Sum_probs=136.5
Q ss_pred HHhHHhhhhhcCCCcHHHHHHHHhcCCeEEEEeecCCC--CCcceEEEeeEEEc----CCCcEEEEecCCchHHHhhhhC
Q 020331 74 ELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKY--EGYPSGSMVDFACD----ADGTPILAVSSLAVHTKDLLAN 147 (327)
Q Consensus 74 ~~~r~~~~~~~rps~ae~ar~lL~~~~~~~LATv~~~~--dG~P~~S~v~y~~d----~~G~~~~~vs~~s~htrNL~~d 147 (327)
..+|+..+ ..|...|.-||.+.+++++|+|+|++... .|+|++..+.+.-. +.|.+||+++++.....|+++|
T Consensus 31 ~~ir~~~~-p~r~d~A~iAR~lvh~~~Wgal~TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd 109 (210)
T KOG3374|consen 31 RIIREYKR-PQRLDHAKIARDLVHRANWGALGTLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKD 109 (210)
T ss_pred hhhhcCCC-CchhhHHHHHHHHhhhcccceeeeeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccC
Confidence 56777664 56678889999999999999999998533 79999999887632 2489999999999999999999
Q ss_pred CceEEEEeeCC---------CCC--cceEEEEEEEEEEecc--hhHHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEE
Q 020331 148 PKCSLLVARDP---------EDR--TDLVITLHGDATSVAE--KDKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVR 213 (327)
Q Consensus 148 prvSL~V~~~~---------~~~--~~~rvtl~G~a~~v~~--ee~~~l~~~y~~~~P~~-~~~~~~df~l~rL~p~~v~ 213 (327)
++++|++.+.+ ||+ .+.+++|+|++..+++ ++.+.....|..|||++ .|+..++|.|.+|++..|+
T Consensus 110 ~~atL~~s~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf~rHPem~~w~~~hn~~~~~l~isni~ 189 (210)
T KOG3374|consen 110 NKATLLFSDEQTLRCKEGGKDPMEPTCARSMLSGQVKKMDPSDKSYQPSLDALFRRHPEMINWVKAHNFYLCELEISNIF 189 (210)
T ss_pred CceeEEeeccccchhhcCCCCCCCchhhhheecceEEEeCCcchhhhhhhhhHhhcCHhHcCCccccceEEEEEeeeeEE
Confidence 99999998754 554 7899999999999985 35666778999999999 9999999999999999999
Q ss_pred EEecCcccccCCccCChhhhhcc
Q 020331 214 YVSGVATALLGSGEFSKEEYQAA 236 (327)
Q Consensus 214 ~v~GFG~a~~~~~~v~~~e~~~A 236 (327)
+.+-||+. +.|+++||.+.
T Consensus 190 vld~~ggp----~~vs~~~yy~v 208 (210)
T KOG3374|consen 190 VLDFYGGP----HKVSASDYYAV 208 (210)
T ss_pred EEEecCCC----cccCHHHhccc
Confidence 99999998 88999999863
No 5
>PRK03467 hypothetical protein; Provisional
Probab=99.74 E-value=1.1e-16 Score=135.69 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=111.6
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCC-cEEEEecCCchHHHhhhhCCceEEEEeeCC-CCCcceEE
Q 020331 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDP-EDRTDLVI 166 (327)
Q Consensus 89 ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G-~~~~~vs~~s~htrNL~~dprvSL~V~~~~-~~~~~~rv 166 (327)
-+.+.++|++.+..+|||.+ ++.||+..+.|++|+++ .+||.+++.++|.+|+.+||+|+.+|..++ .......|
T Consensus 7 ~~~I~~fl~~~hvltLa~~~---~~~~w~A~cFY~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~v~~I~Gv 83 (144)
T PRK03467 7 LTAISRWLAKQHVVTLCVGQ---EGELWCANCFYVFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKTVALIRGV 83 (144)
T ss_pred HHHHHHHHHhCcEEEEEEEc---CCCcceEEEEEEEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcchhhceEE
Confidence 45799999999999999996 68899999999998764 678888899999999999999999999888 55677899
Q ss_pred EEEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEe---cCcc
Q 020331 167 TLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVAT 220 (327)
Q Consensus 167 tl~G~a~~v~~ee~~~l~~~y~~~~P~~~~~~~~df~l~rL~p~~v~~v~---GFG~ 220 (327)
++.|.+..+++++...++++|.+|||.+... ...+|+|++.++++++ |||+
T Consensus 84 Q~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~~---~~~iw~l~l~~iK~tdN~LGFgk 137 (144)
T PRK03467 84 QFKGEIRRLEGEESDAARKRYNRRFPVARAL---SAPVWELRLDEIKMTDNTLGFGK 137 (144)
T ss_pred EEEEEEEecChhHHHHHHHHHHHhCcchhcc---CCceEEEEEEEEEEecccccccc
Confidence 9999999999887778899999999998433 3459999999999998 9996
No 6
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.58 E-value=7.3e-14 Score=119.02 Aligned_cols=121 Identities=24% Similarity=0.151 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEc------CCCcEEEEe------cCCchHHHhhhhCCceEEEEeeC
Q 020331 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACD------ADGTPILAV------SSLAVHTKDLLANPKCSLLVARD 157 (327)
Q Consensus 90 e~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d------~~G~~~~~v------s~~s~htrNL~~dprvSL~V~~~ 157 (327)
++++++|++.++|+|||++ +||.|+.++|+|+++ +++.+||.+ .+.+.|.+||++||||||+|...
T Consensus 3 ~e~~~~L~~~~~~~LaTv~--~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~ 80 (141)
T TIGR03668 3 FEARTRFAQARVARLATVS--PDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRY 80 (141)
T ss_pred HHHHHHHccCCEEEEEEEC--CCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecC
Confidence 5799999999999999998 899999999999998 367777763 35678999999999999998654
Q ss_pred C-CCCcceEEEEEEEEEEecch--hHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEE
Q 020331 158 P-EDRTDLVITLHGDATSVAEK--DKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVR 213 (327)
Q Consensus 158 ~-~~~~~~rvtl~G~a~~v~~e--e~~~l~~~y~~~~P~~~~~~~~df~l~rL~p~~v~ 213 (327)
+ .+.....+++.|+++.++++ +..++.+.+.++|+..... ..+..+++|+|+++.
T Consensus 81 ~~~~~~~~~v~v~G~a~~~~d~~~e~~~~~~~l~~kY~~~~~~-~~~~~vi~i~~~r~~ 138 (141)
T TIGR03668 81 DDDWTRLWWVRADGRAEILRPGEEEHAAAVRLLRAKYHQYQAV-PLEGPVIAIRVERWA 138 (141)
T ss_pred CCCccceEEEEEEEEEEEecCCchhhHHHHHHHHHHhHhhhhc-CCCCcEEEEEEEEEe
Confidence 4 22333469999999999764 4444555666665432111 123788999998653
No 7
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.49 E-value=7.8e-13 Score=111.08 Aligned_cols=117 Identities=22% Similarity=0.223 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEE
Q 020331 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLH 169 (327)
Q Consensus 90 e~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~ 169 (327)
++++++|++.+++.|||++ .||.|++.+|+|..+ +|.++|+....+.|.+||++||+|+|++.+++... ..+.+.
T Consensus 5 ~~~~~~L~~~~~~~LaT~~--~dG~P~~~P~~~~~~-d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~~--~~v~v~ 79 (130)
T TIGR03667 5 AKVARRLREESIVWLTTVR--RSGQPQPVPVWFLWD-GTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRGG--DVVVFT 79 (130)
T ss_pred HHHHHHhcCCCeEEEEEEC--CCCceEEEEEEEEEE-CCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCCc--eEEEEE
Confidence 5799999999999999997 799999999999987 78899989999999999999999999997755221 368999
Q ss_pred EEEEEecchhHHHHHHHHHHhCCCC--cc-c-----cCCCeEEEEEEEeE
Q 020331 170 GDATSVAEKDKAAIRAVYLAKHPNA--FW-V-----DFGDFQFMRIEPKA 211 (327)
Q Consensus 170 G~a~~v~~ee~~~l~~~y~~~~P~~--~~-~-----~~~df~l~rL~p~~ 211 (327)
|+++.+++.+..+....|.++++.. .+ . ..+...++||+|++
T Consensus 80 G~a~i~~d~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T TIGR03667 80 GTAEVVADAPPAREIPAYLAKYREDAARIGMTPERFAADYSVPLRVTPER 129 (130)
T ss_pred EEEEEeCCchhHHHHHHHHHHhhHHHhcCCCChhHhhhccceeEEEeccc
Confidence 9999998754333345566666643 11 2 22345699999975
No 8
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.49 E-value=6e-13 Score=102.96 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCC-cEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEE
Q 020331 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (327)
Q Consensus 90 e~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G-~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl 168 (327)
++++++|++.++++|||++ .+|.|++++++|..+.+. .+||.+...+.|++||++||+|+|++.+++ .....+++
T Consensus 3 ~~~~~~l~~~~~~~laTv~--~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~--~~~~~v~~ 78 (89)
T PF01243_consen 3 EEIREFLEESKYCVLATVD--EDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPE--GTRRGVRV 78 (89)
T ss_dssp HHHHHHHHSTSEEEEEEEE--TTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETT--TTTEEEEE
T ss_pred HHHHHHhcCCCEEEEEEEC--CCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcC--cCceEEEE
Confidence 6899999999999999998 799999999999987554 699999999999999999999999999987 34468999
Q ss_pred EEEEEEecchh
Q 020331 169 HGDATSVAEKD 179 (327)
Q Consensus 169 ~G~a~~v~~ee 179 (327)
.|+|+.++++|
T Consensus 79 ~G~a~~~~d~E 89 (89)
T PF01243_consen 79 SGTAEILTDEE 89 (89)
T ss_dssp EEEEEEESHHH
T ss_pred EEEEEEEcCCC
Confidence 99999998765
No 9
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=99.48 E-value=1.4e-12 Score=109.95 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=91.5
Q ss_pred HHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEE
Q 020331 94 TVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (327)
Q Consensus 94 ~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~a~ 173 (327)
..|++++++.|+|+. .||.|+.++++|+.+ +|.+||+++..++|.+||++||+|+|++.+.... ...+++.|+++
T Consensus 7 ~~L~~~~~~~LaT~~--~dG~P~~~Pv~~~~d-~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~--~~~v~v~G~A~ 81 (132)
T TIGR03666 7 ADLARARYALLTTFR--KDGTPVPTPVWAAVD-GDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGR--PTGPVVPGRAR 81 (132)
T ss_pred HHhccCcEEEEEEEC--CCCcEEEEEEEEEEE-CCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCC--EeEEEEEEEEE
Confidence 568899999999997 799999999999987 5889999999999999999999999998765521 23699999999
Q ss_pred EecchhHHHHHHHHHHhCCCC--cc-----c--cCCCeEEEEEEEe
Q 020331 174 SVAEKDKAAIRAVYLAKHPNA--FW-----V--DFGDFQFMRIEPK 210 (327)
Q Consensus 174 ~v~~ee~~~l~~~y~~~~P~~--~~-----~--~~~df~l~rL~p~ 210 (327)
.+++++..++.+++.++|+.. .| . ..+.+..+||.|+
T Consensus 82 ~v~~~e~~~~~~~l~~kY~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 127 (132)
T TIGR03666 82 ILDGAETARARDLLARRYGLQGRLFPLFSKLRRGRDRNVGLELTPA 127 (132)
T ss_pred EEcchhHHHHHHHHHHHcCChhhhhhhHHHhhccCCCceEEEEEec
Confidence 997777777777888888875 22 1 2345677777775
No 10
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.38 E-value=1.4e-11 Score=100.51 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=82.7
Q ss_pred EEEeecCCCCCcceEEEeeEEEcC-CCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEEecch-hH
Q 020331 103 MLSTFSQKYEGYPSGSMVDFACDA-DGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEK-DK 180 (327)
Q Consensus 103 ~LATv~~~~dG~P~~S~v~y~~d~-~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~a~~v~~e-e~ 180 (327)
+|||++ .+|.|++++++|+.+. ++.+||+++..++|.+||++||+|++++..++... .++++.|.++.++++ +.
T Consensus 1 ~LaTv~--~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~--~~v~i~G~a~~v~d~~~~ 76 (117)
T TIGR03618 1 VLATIR--ADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFPY--RYVEVEGTAELVEDPDPV 76 (117)
T ss_pred CEEEEC--CCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCCc--cEEEEEEEEEEecCCccc
Confidence 589997 7899999999999853 45699999999999999999999999999877331 479999999999864 34
Q ss_pred HHHHHHHHHhCCCC----cc---ccCCCeEEEEEEEeEEE
Q 020331 181 AAIRAVYLAKHPNA----FW---VDFGDFQFMRIEPKAVR 213 (327)
Q Consensus 181 ~~l~~~y~~~~P~~----~~---~~~~df~l~rL~p~~v~ 213 (327)
..+.+++.++|... .| .+-++..+++|+|++++
T Consensus 77 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~l~i~p~~~~ 116 (117)
T TIGR03618 77 RDLVDRLAERYRGAAGEDEYRRPMVDPRRVVVRVTPTRVY 116 (117)
T ss_pred HHHHHHHHHHHcccccchhcccccCCCCEEEEEEEEEEec
Confidence 55555666655322 12 22356799999999764
No 11
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=99.25 E-value=2e-10 Score=97.60 Aligned_cols=119 Identities=25% Similarity=0.362 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC----CCC---
Q 020331 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP----EDR--- 161 (327)
Q Consensus 89 ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~----~~~--- 161 (327)
.+++.++|++..+|+||+.+ +|.|++.|++|+++ +|.+||+.+..+.+.++++++| +++++...+ .+.
T Consensus 2 ~~e~~~iL~~~~~g~la~~~---~~~Py~vP~~f~~~-~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~ 76 (143)
T PF12900_consen 2 REEIWEILDRAPVGRLAFVD---DGYPYIVPVNFVYD-GGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACS 76 (143)
T ss_dssp HHHHHHHHHH-SEEEEEEEE---TTEEEEEEEEEEEE-TTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGG
T ss_pred HHHHHHHHhhCCEEEEEEEe---CCEEEEEEEEEEEE-CCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCc
Confidence 36899999999999999996 79999999999999 6889999999999999999889 999988743 111
Q ss_pred ---cceEEEEEEEEEEecc-hhHHHHHHHHHHhC-CCCccc--------cCCCeEEEEEEEeEEE
Q 020331 162 ---TDLVITLHGDATSVAE-KDKAAIRAVYLAKH-PNAFWV--------DFGDFQFMRIEPKAVR 213 (327)
Q Consensus 162 ---~~~rvtl~G~a~~v~~-ee~~~l~~~y~~~~-P~~~~~--------~~~df~l~rL~p~~v~ 213 (327)
....|.+.|+++.|++ ++..++...+.+++ |.. |. ......+|||+|+++.
T Consensus 77 ~~~~y~SVi~~G~~~~v~d~~ek~~al~~l~~~~~p~~-~~~~~~~~~~~~~~~~v~ri~i~~~s 140 (143)
T PF12900_consen 77 FSMNYRSVIVFGRAEEVEDEEEKAEALRALLEKYAPGR-WDEIRPFADKELKRTAVYRIDIEELS 140 (143)
T ss_dssp EEEEEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHSTTT-CCCSC---HHHHHTEEEEEEEEEEEE
T ss_pred CcceEEEEEEEEEEEEeCCHHHHHHHHHHHHHhccCCC-cccccccchhhhcCeEEEEEEeEEEE
Confidence 3568999999999965 45555666665554 432 22 1235799999999764
No 12
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.11 E-value=1.4e-09 Score=89.47 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=106.9
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCC-cEEEEecCCchHHHhhhhCCceEEEEeeCCC-CCcceEEE
Q 020331 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADG-TPILAVSSLAVHTKDLLANPKCSLLVARDPE-DRTDLVIT 167 (327)
Q Consensus 90 e~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G-~~~~~vs~~s~htrNL~~dprvSL~V~~~~~-~~~~~rvt 167 (327)
+++-++|..++..++|... +|.||+....|++|+.. .+|+++....+|.+-+..|++|..+|..+.. -.....|+
T Consensus 3 ~rI~~flkkq~v~Tw~~~~---e~~~w~asafYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQ 79 (145)
T COG3787 3 TRISRFLKKQHVLTWCVQQ---EGELWCASAFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQ 79 (145)
T ss_pred hHHHHHHHhhheeeeeeec---CCceeeeeeEEEEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeee
Confidence 5688999999999999985 79999999999999754 5666666778999999999999999988873 23456899
Q ss_pred EEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEe---cCcc
Q 020331 168 LHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS---GVAT 220 (327)
Q Consensus 168 l~G~a~~v~~ee~~~l~~~y~~~~P~~~~~~~~df~l~rL~p~~v~~v~---GFG~ 220 (327)
+.|....++.++.+.++.+|.++||.+.... -.+|.|++++++|++ |||+
T Consensus 80 fkge~~~l~~~q~~~Ark~Y~~rfp~akvd~---a~vwqleL~~ikftdNaLG~~k 132 (145)
T COG3787 80 FKGEISRLSGEQSDAARKAYNRRFPVAKVDS---APVWQLELDEIKFTDNALGFGK 132 (145)
T ss_pred eeeeehhhhcchHHHHHHHHhccCchhhccc---CceEEeeeeeEEeecccccccc
Confidence 9999999999888889999999999874432 368999999999985 8995
No 13
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=99.09 E-value=3.3e-09 Score=92.88 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=92.5
Q ss_pred cHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC---------
Q 020331 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP--------- 158 (327)
Q Consensus 88 ~ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~--------- 158 (327)
.-+++..+|+.+.+|.||+.+ +|.||+.|+.|+++ +|.+|++.+..++|...|+.||.|++.|.+..
T Consensus 12 ~~~~i~~~l~~~~~~~La~~~---~~~PyivP~~y~~~-~~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~ 87 (166)
T COG3467 12 SDEEIDAILAAGRVGRLAFAG---DGQPYVVPLNYGYE-GGHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFN 87 (166)
T ss_pred CHHHHHHHHhhCCEEEEEEcC---CCCcEEEEeEeEEe-CCeEEEEeCCcchhhHHhhcCCcEEEEEEccccceeccccc
Confidence 457899999999999999996 78899999999998 47799999999999999999999999998766
Q ss_pred CCCcceEEEEEEEEEEecch-hHHHHH----HHHHHhCCCC--c----cc----cCCCeEEEEEEEeE
Q 020331 159 EDRTDLVITLHGDATSVAEK-DKAAIR----AVYLAKHPNA--F----WV----DFGDFQFMRIEPKA 211 (327)
Q Consensus 159 ~~~~~~rvtl~G~a~~v~~e-e~~~l~----~~y~~~~P~~--~----~~----~~~df~l~rL~p~~ 211 (327)
.......|.++|+++.++++ +...+. ..+...+++. . .. ......+|++.++.
T Consensus 88 ~s~~y~SVvv~G~~~~l~~~~~k~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~ 155 (166)
T COG3467 88 SSRNYRSVVVFGRAEELSDLEEKAAALDHAWSLLMKGRPNWWEPGGRKEVPETVDSSPHSFFRIKIDE 155 (166)
T ss_pred CCcceEEEEEEeEEEEcCChHHHHHHHHHHHHHhcccCcCcCCCCCccccccccccccceEEEEEcce
Confidence 34577899999999999874 443344 4444434443 1 11 22235677777664
No 14
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=99.06 E-value=5.8e-09 Score=93.60 Aligned_cols=120 Identities=21% Similarity=0.274 Sum_probs=87.2
Q ss_pred HHHHHhcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEE
Q 020331 92 IRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHG 170 (327)
Q Consensus 92 ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~-~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G 170 (327)
++.-+...+.++|||++ .+|.|.+..|.+- ++++| ++|++...++|.++|.+||+|+|++..+. ....|.|.|
T Consensus 20 ~~~~~~~~~~~~lATv~--~dG~P~~R~V~lr~~~~~~-l~f~T~~~S~K~~~l~~np~val~~~~~~---~~~qvrv~G 93 (195)
T PRK05679 20 VKAELNDPNAMTLATVD--EDGRPSQRIVLLKGFDERG-FVFYTNYESRKGRQLAANPKAALLFPWKS---LERQVRVEG 93 (195)
T ss_pred HhcCCCCCceEEEEeeC--CCCCEEEEEEEEEEECCCe-EEEEeCCCCHHHHHHhhCCcEEEEEecCC---CCEEEEEEE
Confidence 33445677889999998 7999999999884 67666 99999999999999999999999998764 223789999
Q ss_pred EEEEecchhHHHHHH------------------------------HHHHhCCCCccccCCCeEEEEEEEeEEEEEec
Q 020331 171 DATSVAEKDKAAIRA------------------------------VYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 171 ~a~~v~~ee~~~l~~------------------------------~y~~~~P~~~~~~~~df~l~rL~p~~v~~v~G 217 (327)
.++.+++++..+.-. .+..+++.......+.|.+|+|.|+++-|..+
T Consensus 94 ~a~~~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~f~~~~l~p~~veflql 170 (195)
T PRK05679 94 RVEKVSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQGEVPRPPHWGGYRVVPESIEFWQG 170 (195)
T ss_pred EEEEeCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccCCCCCCCCccEEEEEECCEEEEcCC
Confidence 999988653211111 01111111111223569999999999998865
No 15
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.4e-10 Score=106.04 Aligned_cols=142 Identities=23% Similarity=0.261 Sum_probs=113.0
Q ss_pred cCCCcHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC-CC--
Q 020331 84 ARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP-ED-- 160 (327)
Q Consensus 84 ~rps~ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~-~~-- 160 (327)
.|+++ +++.+.....++.|||++ .+|.|-+|+.++.++ ++..||++|..++|++|+..+|.+|+++.+++ .+
T Consensus 81 ~Rl~~--e~~afr~~~~sv~lat~~--~~g~~~~syAp~~~~-~~d~~iyis~~arh~~N~~~~p~vs~m~iedea~a~s 155 (245)
T COG0748 81 PRLTL--EIEAFRLEFDSVALATLR--ERGLPRASYAPLYVD-DGDYYIYISEIARHARNLGFNPKVSVMFIEDEAKAKS 155 (245)
T ss_pred cchhH--HHHHHHhccchHHHhhhh--hcCCcCCCcCceEec-CCceEEEEehHHHHhhccCcCCchhhheecCchhhhh
Confidence 34444 799999999999999998 789999999999998 46699999999999999999999999998887 22
Q ss_pred -CcceEEEEEEEEEEecc-hhHHHHHHHHHHhCCCC--ccccCCCeEEEEEEEeEEEEEecCcccccCCccCChhhhh
Q 020331 161 -RTDLVITLHGDATSVAE-KDKAAIRAVYLAKHPNA--FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQ 234 (327)
Q Consensus 161 -~~~~rvtl~G~a~~v~~-ee~~~l~~~y~~~~P~~--~~~~~~df~l~rL~p~~v~~v~GFG~a~~~~~~v~~~e~~ 234 (327)
..+.|++....+..++- +.+..+...+.+++... .....++|.++.++|.+..++.|||++ +.++.+.-.
T Consensus 156 ~~~r~rl~~hmnAd~~eai~~yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa----~~~~~d~~~ 229 (245)
T COG0748 156 AFARKRLREHMNADHAEAIAEYAQVLAQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQA----YAISGDGRI 229 (245)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcchhhcccccccceeeeccCCCceEEeccchh----hccccchhH
Confidence 25667777777766653 34455555666666653 445678999999999999999999999 666665443
No 16
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.70 E-value=2e-07 Score=78.76 Aligned_cols=117 Identities=21% Similarity=0.367 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCC-CcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEE
Q 020331 90 EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD-GTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITL 168 (327)
Q Consensus 90 e~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~-G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl 168 (327)
..+..+++....|+|+|+. .+|.|+.-++.|--|+. |.+||.++..++++..|+.||+|++++..+.. ..-|.+
T Consensus 8 ~~~~~~~e~~kv~~l~tv~--~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~---~~fv~v 82 (145)
T COG3871 8 QALAELLEGSKVGMLATVQ--ENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDH---DAFVEV 82 (145)
T ss_pred HHHHHHHhhCceEEEEEec--CCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCC---cceEEE
Confidence 4678899999999999997 67899999988655533 89999999999999999999999999988763 347999
Q ss_pred EEEEEEecchhH-----HHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEe
Q 020331 169 HGDATSVAEKDK-----AAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 216 (327)
Q Consensus 169 ~G~a~~v~~ee~-----~~l~~~y~~~~P~~~~~~~~df~l~rL~p~~v~~v~ 216 (327)
.|+++.+++... .-..+.| ||. -.+-|++.+++|+|+++.|..
T Consensus 83 ~Gtael~~dra~~d~~W~~~~~~w---Fe~--GkedP~l~~Lkv~~e~i~yw~ 130 (145)
T COG3871 83 SGTAELVEDRAKIDELWTSVLEAW---FEQ--GKEDPDLTMLKVTAEDIDYWN 130 (145)
T ss_pred EEEEEeeccHHHHHHhhhhhHHHH---Hhc--CCCCCCeEEEEEchhHhHHHh
Confidence 999999987531 2222222 221 134578999999999998863
No 17
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=98.66 E-value=1.1e-06 Score=80.28 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=83.4
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEEe
Q 020331 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 175 (327)
Q Consensus 96 L~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~a~~v 175 (327)
+...+..+|||++ .+|.|.+-+|.+-...++.++|+++..++|.++|.+||+|+|++..+.. ...|.|.|.++.+
T Consensus 46 ~~~~~~~~LaTvd--~~G~P~~R~v~lr~~~~~~l~F~T~~~S~K~~eL~~np~v~l~f~~~~~---~~qvrv~G~a~~~ 120 (217)
T TIGR00558 46 LTEPNAMTLSTVD--ESGRPSSRMVLLKELDERGFVFYTNYGSRKGHQIETNPNAALVFFWPDL---ERQVRVEGKVEKL 120 (217)
T ss_pred CCCCceEEEEEEC--CCCCEEEEEEEEEEECCCcEEEEECCCChHHHHHHhCCcEEEEEEeCCC---CEEEEEEEEEEEC
Confidence 4566779999997 6899999887774333445999999999999999999999999988752 3479999999998
Q ss_pred cchhHHHH---------------------------HHH---HHHhCCCCccccCCCeEEEEEEEeEEEEEec
Q 020331 176 AEKDKAAI---------------------------RAV---YLAKHPNAFWVDFGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 176 ~~ee~~~l---------------------------~~~---y~~~~P~~~~~~~~df~l~rL~p~~v~~v~G 217 (327)
++++..+. ... +..++++......+.|..|+|.|+++-|..+
T Consensus 121 ~~~~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~~p~p~~f~~~~l~p~~vEf~~l 192 (217)
T TIGR00558 121 PREESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKNTEKFEDAEIPRPDYWGGYRVVPEEIEFWQG 192 (217)
T ss_pred CHHHHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHHHhhccCCCCCCCCceEEEEEECCEEEEccC
Confidence 76532111 011 1111221111223468999999999988754
No 18
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=98.54 E-value=2e-06 Score=76.45 Aligned_cols=133 Identities=22% Similarity=0.287 Sum_probs=97.2
Q ss_pred HHHHHhHHhhhhhcCCCcHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecCCchHHHhhhhCCc
Q 020331 71 NVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPK 149 (327)
Q Consensus 71 ~~~~~~r~~~~~~~rps~ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~-~d~~G~~~~~vs~~s~htrNL~~dpr 149 (327)
+=|.+|++--+.+. +.=+...+-.+|||++ .+|.|.+-+|-.. +|+.| ++|++.-.|+|.+.|.+||+
T Consensus 26 ~P~~lF~~Wl~eA~--------~~~~~ePnAm~lATvd--~~G~P~~R~VLLK~~DerG-fvFyTN~~S~Kg~eLa~np~ 94 (214)
T COG0259 26 NPLTLFRRWLEEAI--------RAEVNEPNAMTLATVD--EQGRPSSRIVLLKELDERG-FVFYTNYGSRKGRELAANPY 94 (214)
T ss_pred CHHHHHHHHHHHHH--------hcccCCCceeEEEeec--CCCCceeeEEEecccCCCc-EEEEeccCCcchhhHhhCcc
Confidence 44677777655433 2237788899999998 7899999887665 56667 77889999999999999999
Q ss_pred eEEEEeeCCCCCcceEEEEEEEEEEecchhH------------------------------HHHHHHHHHhCCCCccccC
Q 020331 150 CSLLVARDPEDRTDLVITLHGDATSVAEKDK------------------------------AAIRAVYLAKHPNAFWVDF 199 (327)
Q Consensus 150 vSL~V~~~~~~~~~~rvtl~G~a~~v~~ee~------------------------------~~l~~~y~~~~P~~~~~~~ 199 (327)
+++++.-.+ + ...|.|.|.++.|+++|. +...+.|.++|+.....-.
T Consensus 95 Aal~F~W~~--L-~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P 171 (214)
T COG0259 95 AALLFPWKE--L-ERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPRP 171 (214)
T ss_pred eeEEecchh--c-cceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999997665 2 126899999999986542 2223345556665432223
Q ss_pred CCeEEEEEEEeEEEEEec
Q 020331 200 GDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 200 ~df~l~rL~p~~v~~v~G 217 (327)
+.+.-|||.|++|-|-.|
T Consensus 172 ~~WgG~ri~p~~iEFWqg 189 (214)
T COG0259 172 PHWGGFRIVPESIEFWQG 189 (214)
T ss_pred CCccceEeeeeEEEEecC
Confidence 345789999999999865
No 19
>PRK06733 hypothetical protein; Provisional
Probab=98.38 E-value=1.5e-05 Score=68.42 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=86.6
Q ss_pred cHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEE--EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceE
Q 020331 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFA--CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLV 165 (327)
Q Consensus 88 ~ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~--~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~r 165 (327)
.-++..++|+....++|+|++. .+|.|..+++..+ .| +..+.|.....+.-.+||++||+++|.+.+++. .
T Consensus 9 Lt~el~~~L~~~~~~~laTv~k-edG~Pnv~~Iswv~a~d-~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~-----~ 81 (151)
T PRK06733 9 LTEDLVQLLRKERIVTLATTDF-EKQVPNVSAISWVYAVS-KTSIRFAVDQRSRIVENIRHNPGVVLTIIANES-----V 81 (151)
T ss_pred cCHHHHHHHcCCceEEEEEEcc-CCCceeEEEEEEEEEcC-CCEEEEEEccCcHhHHHHhhCCcEEEEEEeCCc-----E
Confidence 3468999999999999999972 3899999998754 45 478999889999999999999999999998752 3
Q ss_pred EEEEEEEEEecchhHHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEecCcc
Q 020331 166 ITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVAT 220 (327)
Q Consensus 166 vtl~G~a~~v~~ee~~~l~~~y~~~~P~~~~~~~~df~l~rL~p~~v~~v~GFG~ 220 (327)
.++.|.++.+.+. +. ..| -..+++++++++|+=+-=.|.
T Consensus 82 yqIkG~a~i~~e~----ie-----~vp-------lk~s~vei~I~eVrdv~FyGa 120 (151)
T PRK06733 82 YSISGAAEILTDR----ME-----GVP-------LKLALIEVNVEEVRDVMFYGA 120 (151)
T ss_pred EEEEEEEEEEeee----cc-----ccc-------ceEEEEEEEEEEEEEeeeccc
Confidence 7999999988642 00 111 137899999999997754553
No 20
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=98.34 E-value=1.6e-05 Score=80.27 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=84.3
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 020331 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (327)
Q Consensus 96 L~~~~~~~LATv~~~~dG~P~~S~v~y~-~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~a~~ 174 (327)
+...+..+|||++ .+|.|.+-.|-+- +|++| ++|++...|+|.++|.+||++||++..+.- ...|.|.|.++.
T Consensus 286 ~~ep~am~LATvd--~~G~P~~R~VlLk~~d~~g-~~F~Tn~~S~K~~eL~~Np~aal~F~w~~~---~rQvRv~G~a~~ 359 (462)
T PLN03049 286 LREPNAMTLATAG--EDGRPSARIVLLKGVDKRG-FVWYTNYDSRKAHELSANPKASLVFYWDGL---HRQVRVEGSVEK 359 (462)
T ss_pred CCCCCeeEEEEEC--CCCCeeEEEEEEeEEcCCc-EEEEECCCCHHHHHHhhCCcEEEEeecCCC---CEEEEEEEEEEE
Confidence 4577899999998 7999999877553 57666 588899999999999999999999987652 236899999999
Q ss_pred ecchhHHHH------------------------------HHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEec
Q 020331 175 VAEKDKAAI------------------------------RAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 175 v~~ee~~~l------------------------------~~~y~~~~P~~-~~~~~~df~l~rL~p~~v~~v~G 217 (327)
+++++.++. ...+..++++. .....+.|..|++.|+++-|..|
T Consensus 360 ~~~~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~~w~g~~v~p~~iEfwq~ 433 (462)
T PLN03049 360 VSEEESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKHWGGYRLKPELIEFWQG 433 (462)
T ss_pred CCHHHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCCceEEEEEEeeEEEEccC
Confidence 875432110 11122222221 12223468999999999988865
No 21
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=2.5e-05 Score=64.05 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=90.4
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEE
Q 020331 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHG 170 (327)
Q Consensus 91 ~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G 170 (327)
++.++|..+..+.|||+. +|.|-.-+..+.+..++.+||++...-.-++.|++||.++++-.+-.. .-|.|+|
T Consensus 3 d~leFLken~~~~laTve---~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kdg----~~vrlrg 75 (132)
T COG5015 3 DPLEFLKENKSVALATVE---DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKDG----VMVRLRG 75 (132)
T ss_pred cHHHHHHhCCcEEEEEcc---CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCCc----eEEEEee
Confidence 577899999999999995 899988888888777789999888888899999999999998655431 2466999
Q ss_pred EEEEecchhHHHHHHHHHHhCCCC--ccc--cCCCeEEEEEEEeEEEE
Q 020331 171 DATSVAEKDKAAIRAVYLAKHPNA--FWV--DFGDFQFMRIEPKAVRY 214 (327)
Q Consensus 171 ~a~~v~~ee~~~l~~~y~~~~P~~--~~~--~~~df~l~rL~p~~v~~ 214 (327)
.++.++.-+ +..+.++.+|.. .|. +.+-|.+|.++..++..
T Consensus 76 ~a~f~~nie---lkk~ale~yP~Lkeiy~tddnpifevfyld~~e~~m 120 (132)
T COG5015 76 RAEFVENIE---LKKLALEIYPVLKEIYPTDDNPIFEVFYLDSGEGEM 120 (132)
T ss_pred eEEeccchH---HHHHHhhhchhhHhhccCCCCCEEEEEEEeeccEEE
Confidence 999998754 556677888876 453 45568888888665554
No 22
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=97.89 E-value=0.0003 Score=72.06 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=83.1
Q ss_pred hcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEEe
Q 020331 97 DRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSV 175 (327)
Q Consensus 97 ~~~~~~~LATv~~~~dG~P~~S~v~y~-~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~a~~v 175 (327)
...+..+|||++ .+|.|.+-.|-+- +|++| ++|++.-.|+|.+.|.+||++++++....- ...|.|.|.++.+
T Consensus 369 ~eP~Am~LATv~--~~G~P~~RtVlLk~~d~~g-~~F~Tn~~S~K~~el~~Np~aal~F~w~~l---~rQVRi~G~v~~~ 442 (544)
T PLN02918 369 REPNAMALSTAN--KDGKPSSRMVLLKGVDKNG-FVWYTNYESQKGSDLSENPSAALLFYWEEL---NRQVRVEGSVQKV 442 (544)
T ss_pred CCCccceEEeeC--CCCCeeeEEEEEeEEcCCc-eEEEECCCChhHHHHHhCCcEEEEeeeccc---cEEEEEEEEEEEC
Confidence 456788999998 7999998777654 56656 668899999999999999999999988762 2368999999998
Q ss_pred cchhHH---------------------------HH---HHHHHHhCCCCc-cccCCCeEEEEEEEeEEEEEec
Q 020331 176 AEKDKA---------------------------AI---RAVYLAKHPNAF-WVDFGDFQFMRIEPKAVRYVSG 217 (327)
Q Consensus 176 ~~ee~~---------------------------~l---~~~y~~~~P~~~-~~~~~df~l~rL~p~~v~~v~G 217 (327)
++++.+ .+ .+.+.+++++.. ..-.+.+.-|+|.|+++.|..|
T Consensus 443 ~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~WgGy~v~P~~iEFWQg 515 (544)
T PLN02918 443 PESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKNWGGYRLKPNLFEFWQG 515 (544)
T ss_pred CHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEecCEEEECCC
Confidence 765321 11 112223333321 2223457899999999999876
No 23
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=97.80 E-value=0.00035 Score=57.41 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=68.2
Q ss_pred CeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecC-C----chHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 020331 100 VRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSS-L----AVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (327)
Q Consensus 100 ~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~-~----s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~a~~ 174 (327)
..+.|.|.+. ..|.|+.+++.|..++ |.+|+..|. . +.-++||++||+|.+.+. .-+..+.++.
T Consensus 8 p~~lL~t~GR-kSG~~r~tpl~~~~~~-~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~---------g~~~~~~ar~ 76 (113)
T TIGR00026 8 PVLLLTTTGR-KSGKPRTTPVTYVRHD-PGVLIVASNGGAPRHPDWYKNLKANPRVRVRVG---------GKTFVATARL 76 (113)
T ss_pred CEEEEEECCC-CCCcEEEEEEEEEEEC-CEEEEEEecCCCCCCCHHHHHhhhCCcEEEEEC---------CEEEEEEEEE
Confidence 4677888753 6899999999999885 556665343 2 456999999999999871 1257899999
Q ss_pred ecchhHHHHHHHHHHhCCCC-ccc
Q 020331 175 VAEKDKAAIRAVYLAKHPNA-FWV 197 (327)
Q Consensus 175 v~~ee~~~l~~~y~~~~P~~-~~~ 197 (327)
++++|..++...|.+++|.- .|.
T Consensus 77 v~~~e~~~~~~~~~~~~p~~~~yq 100 (113)
T TIGR00026 77 VSGDERDQLWAGVVRLYPRYGRYQ 100 (113)
T ss_pred CCchhHHHHHHHHHHHCcCHHHHH
Confidence 99988888999999999975 554
No 24
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [].; PDB: 2OL5_A.
Probab=97.68 E-value=0.0015 Score=57.34 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcC----CCcEEEEecCCchHHHhhhhCCceEEEEeeCC-----C
Q 020331 89 LEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDA----DGTPILAVSSLAVHTKDLLANPKCSLLVARDP-----E 159 (327)
Q Consensus 89 ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~----~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~-----~ 159 (327)
.+++++|++...+|+|.|.. +|.|.+|.++|.++. .|.++.+++..-++.+.+..+..|-+.+..+. .
T Consensus 12 ~~~l~~~i~~~pfa~Lvt~~---~~~~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISPs 88 (169)
T PF04299_consen 12 PEELRAFIRAHPFATLVTNG---DGGPVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISPS 88 (169)
T ss_dssp HCHHHHHHHHS-EEEEEEEE---TTEEEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHhCCcEEEEEcC---CCCcceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECch
Confidence 45799999999999999975 677999999999984 57788888888899999988888877777653 2
Q ss_pred CC-------------cceEEEEEEEEEEecch-hHHHH----HHHHHHhCCCCcc--cc---------CCCeEEEEEEEe
Q 020331 160 DR-------------TDLVITLHGDATSVAEK-DKAAI----RAVYLAKHPNAFW--VD---------FGDFQFMRIEPK 210 (327)
Q Consensus 160 ~~-------------~~~rvtl~G~a~~v~~e-e~~~l----~~~y~~~~P~~~~--~~---------~~df~l~rL~p~ 210 (327)
+. ++..|.+.|+++.++++ +..+. .+.|....+. .| .+ .....-|+|+++
T Consensus 89 WYp~k~~~~~~VPTWNY~aVh~~G~~~~~~d~~~~~~~l~~l~~~~E~~~~~-pW~~~~~~~~~~~~ll~~IvGfei~I~ 167 (169)
T PF04299_consen 89 WYPTKAEHGKVVPTWNYAAVHAYGTVRIIDDPDWLRAHLDRLTAHFEPDRPP-PWSVDDAPEDYIERLLRGIVGFEIEIT 167 (169)
T ss_dssp CS----STTS---EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHS-T-T-----S-------HCHHHCTEEEEEEEEE
T ss_pred hhcccCcCCCCCCCcCEEEEEEEEEEEEEeCHHHHHHHHHHHHHHhCCCCCC-CcccccCCHHHHHHHhCCeEEEEEEEE
Confidence 22 57789999999999654 44333 3344333322 22 12 234567888887
Q ss_pred EE
Q 020331 211 AV 212 (327)
Q Consensus 211 ~v 212 (327)
++
T Consensus 168 ~i 169 (169)
T PF04299_consen 168 RI 169 (169)
T ss_dssp EE
T ss_pred eC
Confidence 64
No 25
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=97.39 E-value=0.0021 Score=54.23 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=69.5
Q ss_pred CCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecC-----CchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEE
Q 020331 99 SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSS-----LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDAT 173 (327)
Q Consensus 99 ~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~-----~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~a~ 173 (327)
...+.|.|.+. ..|.|+.+++.|..++ |++++..+. ...=.+||+++|.|.+.+. +-+..+.++
T Consensus 25 ~~~~lLtt~GR-kSG~~r~tpl~~~~~g-~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~---------g~~~~~~a~ 93 (132)
T PF04075_consen 25 MPVLLLTTTGR-KSGRPRRTPLVYVRDG-GRLVVVASNGGAPRHPDWYRNLRANPEVTVEVG---------GRRRRVRAR 93 (132)
T ss_dssp EEEEEEEEE-T-TT-SEEEEEEEEEEET-TEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEET---------TEEEEEEEE
T ss_pred CcEEEEEECCC-CCCCeEEEEEEEEEeC-CEEEEEEccCCCCCCChhHHhhhhCCcEEEEEC---------CEEEEEEEE
Confidence 34788888853 5799999999998874 667665653 3455999999999998871 237778889
Q ss_pred EecchhHHHHHHHHHHhCCCC-cccc--CCCeEEEEEEE
Q 020331 174 SVAEKDKAAIRAVYLAKHPNA-FWVD--FGDFQFMRIEP 209 (327)
Q Consensus 174 ~v~~ee~~~l~~~y~~~~P~~-~~~~--~~df~l~rL~p 209 (327)
.++++|..++..++.+.+|.- .|.. .-.+.++.|+|
T Consensus 94 ~~~~~er~~~~~~~~~~~p~~~~y~~~t~R~ipvv~l~p 132 (132)
T PF04075_consen 94 EVTDDERARLWARLVAAYPGYADYQARTGRRIPVVVLEP 132 (132)
T ss_dssp EE-HHHHHHHHHHHHHHSTHHHHHHHHCSSTS-EEEEEE
T ss_pred EcCchHHHHHHHHHHHHCcChHHhcccCCCEeeEEEecC
Confidence 998888888888999998873 3321 12355666665
No 26
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=97.11 E-value=0.0011 Score=58.99 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=67.1
Q ss_pred HhcCCeEEEEeecCCCCCcceEEEeeEE-EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEEEEE
Q 020331 96 LDRSVRGMLSTFSQKYEGYPSGSMVDFA-CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATS 174 (327)
Q Consensus 96 L~~~~~~~LATv~~~~dG~P~~S~v~y~-~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~a~~ 174 (327)
+...+..+|||++ .+|.|..-+|-|- +|.+|..++..-..+++.+||..||.+++++.-+. +. ..|.+.|.++.
T Consensus 53 ~~~~~am~LsT~~--~d~rvssRmvLlKgl~~~gf~fytn~~~srk~kdL~~NP~Aal~Fyw~~--l~-rQVRveG~ve~ 127 (228)
T KOG2586|consen 53 IGEINAMTLSTAD--KDGRVSSRMVLLKGLDHDGFVFYTNYGTSRKGKDLQENPNAALLFYWED--LN-RQVRVEGIVEK 127 (228)
T ss_pred cCchhheeehhcc--ccCCcceeeeeeecccCCCeEEEeeccccccccccccCCcceEEEeehh--cc-ceeEEEecccc
Confidence 3445668899997 6999988887775 68888655433448999999999999999998876 21 16899999999
Q ss_pred ecchhHHHHHHHHHHhCCC
Q 020331 175 VAEKDKAAIRAVYLAKHPN 193 (327)
Q Consensus 175 v~~ee~~~l~~~y~~~~P~ 193 (327)
++.++. ++|.+.-|-
T Consensus 128 l~~ee~----e~yf~srp~ 142 (228)
T KOG2586|consen 128 LPREEA----EAYFKSRPR 142 (228)
T ss_pred CCHHHH----HHHHhcCcc
Confidence 987653 356555553
No 27
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=96.54 E-value=0.03 Score=44.97 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=54.9
Q ss_pred hcCCeEEEEeecCCCCCcceEE-EeeEEEcCC-----CcEEEEecCCchHHHhhh-hCCceEEEEeeCCCCCcceEEEEE
Q 020331 97 DRSVRGMLSTFSQKYEGYPSGS-MVDFACDAD-----GTPILAVSSLAVHTKDLL-ANPKCSLLVARDPEDRTDLVITLH 169 (327)
Q Consensus 97 ~~~~~~~LATv~~~~dG~P~~S-~v~y~~d~~-----G~~~~~vs~~s~htrNL~-~dprvSL~V~~~~~~~~~~rvtl~ 169 (327)
...++.+|||++ ..+|.|.+- +|.=.++.+ ..+.|++..-+.|...|. .||++++++..+.. ...+.|.
T Consensus 18 ~~~~~~~LATv~-~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~~~~~---~~Q~Ri~ 93 (100)
T PF12766_consen 18 HPFRYFQLATVD-PPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFWFPET---REQFRIR 93 (100)
T ss_dssp CGGGCEEEEEEE--TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEEECCC---TEEEEEE
T ss_pred CCCceeEEEEec-CCCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEEeCCc---cEEEEEE
Confidence 456789999997 358999874 444345544 458888888899999999 99999999998872 2357788
Q ss_pred EEEEEe
Q 020331 170 GDATSV 175 (327)
Q Consensus 170 G~a~~v 175 (327)
|.+..+
T Consensus 94 G~a~ii 99 (100)
T PF12766_consen 94 GRASII 99 (100)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888765
No 28
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=95.88 E-value=0.13 Score=46.13 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=71.8
Q ss_pred cHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCC----CcEEEEecCCchHHHhhhhCCceEEEEeeCC-----
Q 020331 88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDAD----GTPILAVSSLAVHTKDLLANPKCSLLVARDP----- 158 (327)
Q Consensus 88 ~ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~----G~~~~~vs~~s~htrNL~~dprvSL~V~~~~----- 158 (327)
..+....|++...+|+|.|.. .|.|+++.++|.+++. |.++.+++....|.+-+.....|=+.+..++
T Consensus 11 d~~~L~a~ir~~pfgtlvt~~---~~~p~AthlP~ll~e~~~~~~~L~~HlAraNp~w~~~~~~~~vLvvFqgpdAYISP 87 (209)
T COG2808 11 DPEVLHALIRAHPFGTLVTSG---GGGPFATHLPFLLNEEEGGEGVLIAHLARANPQWRGLEDGQPVLVVFQGPDAYISP 87 (209)
T ss_pred CHHHHHHHHHhCCceEEEecc---CCccccccCceEEeccCCCceEEEeeecccCCcccccCCCCeEEEEEeCCCcccCc
Confidence 456899999999999999985 7899999999999753 3455555556677777766555655555543
Q ss_pred CCC-------------cceEEEEEEEEEEecchhH-HHHHHHHHHhC
Q 020331 159 EDR-------------TDLVITLHGDATSVAEKDK-AAIRAVYLAKH 191 (327)
Q Consensus 159 ~~~-------------~~~rvtl~G~a~~v~~ee~-~~l~~~y~~~~ 191 (327)
.|. ++..|...|+++.++|+++ ..+..+....|
T Consensus 88 ~WY~sK~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt~~~ 134 (209)
T COG2808 88 AWYPSKRETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLTDEH 134 (209)
T ss_pred ccccccccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHHHHh
Confidence 111 5678999999999998763 33444444333
No 29
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=93.02 E-value=0.62 Score=41.11 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=70.6
Q ss_pred HHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEc--CCCcEEEEecCC-chH-HHhhhhCCceEEEEeeCCCCCcceEE
Q 020331 91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACD--ADGTPILAVSSL-AVH-TKDLLANPKCSLLVARDPEDRTDLVI 166 (327)
Q Consensus 91 ~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d--~~G~~~~~vs~~-s~h-trNL~~dprvSL~V~~~~~~~~~~rv 166 (327)
..++++....++.|+|++ .||.|-..+.+|... .+|.+++ +.+. ..+ -+||..||++++......+ .....
T Consensus 33 ~~~e~~~~~~~~~laT~d--~dG~p~~~~~p~~qr~d~~~~~~v-~d~~~~~~~~~~lgnn~~~tl~n~~~~~--~~~~f 107 (173)
T COG3576 33 HYREFIQTSQLAALATVD--KDGPPNVDPIPFAQRGDPAGFTIV-IDDNTAGKTDRNLGNNPKITLRNILRNR--RALLF 107 (173)
T ss_pred hhhhhhccccEEEEEEec--cCCCCCcCccchhhccCCCCceEE-eCcccccccccccccCccceeEEeccCC--ccceE
Confidence 477888889999999998 689999999999654 3344444 5443 344 4558999999998776531 11234
Q ss_pred EEEEEEEEecchh-HHHHHHHHHHhCCCCccccCCCeEEEEEEEeEEEEEe
Q 020331 167 TLHGDATSVAEKD-KAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVS 216 (327)
Q Consensus 167 tl~G~a~~v~~ee-~~~l~~~y~~~~P~~~~~~~~df~l~rL~p~~v~~v~ 216 (327)
.+.|.++...... ..+..+.+.. .-.++.......+.+++++++.
T Consensus 108 ~v~gt~~I~~~g~~~~~~~~~~~~-----~~~~l~pk~~~vv~v~~v~~~~ 153 (173)
T COG3576 108 LVKGTARIQGRGAVYDAVVKLAAF-----LMDGLPPKSAIVVTVEEVYFLA 153 (173)
T ss_pred EecceEEEEeccceehHHhhhhHh-----hccCCCCceeEEEEeehhhhhh
Confidence 5555555443211 1111111110 1112334467778888888874
No 30
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function.; PDB: 2IML_A 3B5M_C 2PTF_A 2NR4_A.
Probab=74.36 E-value=11 Score=33.23 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=40.7
Q ss_pred EEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC
Q 020331 102 GMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP 158 (327)
Q Consensus 102 ~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~ 158 (327)
+.+.|.+ .+ .|..+|+...++ ++.+++..-..|...+||.+++.+++-|.++.
T Consensus 3 ~IvtT~~--~~-~~N~APiGi~~~-~~~~~~~lf~gS~T~~Nl~~~~~~vvnit~Dp 55 (177)
T PF04289_consen 3 VIVTTKN--ED-EPNAAPIGIIRD-GDELIIRLFKGSHTYENLKETGYFVVNITDDP 55 (177)
T ss_dssp EEEEEES--TT--EEEEEEEEEES-SSEEEEEEETTSHHHHHHHHHSEEEEEE---H
T ss_pred EEEEECC--CC-CCcCCcEEEEEE-CCEEEEEEcCCCchHHHHhhCCEEEEEECCCH
Confidence 4566765 55 799999999886 45688888889999999999999999998764
No 31
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=33.18 E-value=1.6e+02 Score=22.27 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=34.7
Q ss_pred HHHHHhc--CCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEE
Q 020331 92 IRTVLDR--SVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLV 154 (327)
Q Consensus 92 ar~lL~~--~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V 154 (327)
+..|-.. .+.-|-+|+ +|.+|-+.+.. ..+|..+|.++..-++...+.....|++.+
T Consensus 22 ~~~l~~~~~g~v~V~~tI----~g~~~~~sl~p--~g~G~~~Lpv~~~vRk~~g~~~Gd~V~v~l 80 (80)
T PF08922_consen 22 AEELGEGGWGRVPVRGTI----DGHPWRTSLFP--MGNGGYILPVKAAVRKAIGKEAGDTVEVTL 80 (80)
T ss_dssp HHHH--S--S-EEEEEEE----TTEEEEEEEEE--SSTT-EEEEE-HHHHHHHT--TTSEEEEEE
T ss_pred HHHhccccCCceEEEEEE----CCEEEEEEEEE--CCCCCEEEEEcHHHHHHcCCCCCCEEEEEC
Confidence 4444444 577788888 48998774433 667888888887777777777776666653
No 32
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=28.38 E-value=70 Score=23.72 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=25.8
Q ss_pred eEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCc
Q 020331 116 SGSMVDFACDADGTPILAVSSLAVHTKDLLANPK 149 (327)
Q Consensus 116 ~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dpr 149 (327)
-|+-..|+.. ||.+++..|...++.-.+.+|||
T Consensus 15 PGtG~m~Vr~-Dg~v~~FcssKc~k~~~~~rnPR 47 (66)
T COG2075 15 PGTGIMYVRN-DGKVLRFCSSKCEKLFKLGRNPR 47 (66)
T ss_pred CCceEEEEec-CCeEEEEechhHHHHHHccCCCc
Confidence 3455568876 79998889999998777788987
No 33
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.57 E-value=3.8e+02 Score=22.07 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=53.1
Q ss_pred HhcCCeEEEEeecCCCCCcceE--EEeeEEEcCCCcEEEEecC--CchHHHhhhhCCceEEEEeeCCCCCcceEEEEEEE
Q 020331 96 LDRSVRGMLSTFSQKYEGYPSG--SMVDFACDADGTPILAVSS--LAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGD 171 (327)
Q Consensus 96 L~~~~~~~LATv~~~~dG~P~~--S~v~y~~d~~G~~~~~vs~--~s~htrNL~~dprvSL~V~~~~~~~~~~rvtl~G~ 171 (327)
+..+....++... .||.-++ +++|.+.. ++.+|+-.-. .+.-++.-.......+.+.. +...=.
T Consensus 6 i~~adel~iap~r--~DG~t~~~p~~IW~V~v-dd~lYVRs~~G~~s~Wy~~A~~~~~GrI~a~G---------~~~dV~ 73 (116)
T PF10012_consen 6 IDAADELHIAPFR--EDGKTLRTPTWIWVVRV-DDDLYVRSYNGRNSRWYRAALAQGAGRIRAGG---------VEKDVT 73 (116)
T ss_pred cCccceEEecccc--CCCcccCCCeeEEEEEE-CCEEEEEecCCCcCHHHHHHhhCCCcEEEECC---------EEeeEE
Confidence 4556677788876 7895444 67788876 5778875533 34556655444444443321 222223
Q ss_pred EEEecc-hhHHHHHHHHHHhCCCCcc
Q 020331 172 ATSVAE-KDKAAIRAVYLAKHPNAFW 196 (327)
Q Consensus 172 a~~v~~-ee~~~l~~~y~~~~P~~~~ 196 (327)
.+++.+ +....+-+.|.+||....|
T Consensus 74 F~~v~d~~~~~~iD~AYr~KY~~s~y 99 (116)
T PF10012_consen 74 FEPVTDPALNDAIDAAYRAKYGGSPY 99 (116)
T ss_pred EEeCCCHHHHHHHHHHHHHhcCCCCc
Confidence 345533 3467788999999987534
No 34
>PF01613 Flavin_Reduct: Flavin reductase like domain; InterPro: IPR002563 The FMN-binding domain is found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes, and various other oxidoreductase and monooxygenase enzymes [, , ]. This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0042602 flavin reductase activity, 0055114 oxidation-reduction process; PDB: 2ECU_A 2ED4_B 2ECR_A 1YOA_A 2QCK_A 3HMZ_A 2D36_A 2D38_A 2D37_A 3NFW_D ....
Probab=22.49 E-value=1.4e+02 Score=24.91 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=36.0
Q ss_pred eEEEEeecCCCCCcceEEEeeEEE---cCCCcEEEEecCCchHHHhhhhCCceEEEEeeC
Q 020331 101 RGMLSTFSQKYEGYPSGSMVDFAC---DADGTPILAVSSLAVHTKDLLANPKCSLLVARD 157 (327)
Q Consensus 101 ~~~LATv~~~~dG~P~~S~v~y~~---d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~ 157 (327)
.++++| . .+|.+.+.++.... .+--.+.|.+...+.-.+||++.+.+++.+...
T Consensus 8 v~vvtt-~--~~g~~~~~~~s~~~~~s~~Pp~v~~~l~~~~~t~~~i~~~~~f~vn~l~~ 64 (154)
T PF01613_consen 8 VAVVTT-D--EDGEPNGMTVSSVTSVSLDPPLVLVSLNKSSHTYDNIEESGEFTVNVLSE 64 (154)
T ss_dssp -EEEEE-E--ETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBG
T ss_pred cEEEEE-C--CCCeEEEEEeeeeEEEECCCCEEEEEECCCCchhHHHhhCCcEEEEeCHH
Confidence 456677 5 57888776665432 212346666666777789999999988887554
No 35
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=21.84 E-value=67 Score=26.98 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=24.2
Q ss_pred EeeEEEcCCCcEEEEecCCchHHHhhhhCCc
Q 020331 119 MVDFACDADGTPILAVSSLAVHTKDLLANPK 149 (327)
Q Consensus 119 ~v~y~~d~~G~~~~~vs~~s~htrNL~~dpr 149 (327)
-..|+.. ||.+++++|....+.-.+++|||
T Consensus 19 G~~fVR~-DGkvf~FcssKC~k~f~~kRnPR 48 (131)
T PRK14891 19 GTMFVRK-DGTVLHFVDSKCEKNYDLGREAR 48 (131)
T ss_pred CcEEEec-CCCEEEEecHHHHHHHHccCCCc
Confidence 3457776 68999889999988778899996
No 36
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=21.54 E-value=93 Score=26.11 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=22.4
Q ss_pred hhhhhcCHHHHHHHHHHhCCCC-------CCcEEEEEeeCC
Q 020331 250 SHMNRDHAEDTRIIVQHSTSIP-------VASAYMLDLDSL 283 (327)
Q Consensus 250 ~HMN~dH~d~l~~~~~~~~~~~-------~~~a~m~~vD~~ 283 (327)
-|||+-.-..|..+++++|... ...|.+..||+.
T Consensus 54 vHMNaT~W~sLT~FvkyLgr~G~~~Vdetekg~~I~yID~~ 94 (127)
T PF10357_consen 54 VHMNATRWTSLTEFVKYLGREGKCKVDETEKGWFISYIDRS 94 (127)
T ss_dssp --GGGSS-SSHHHHHHHHTTTTSEEEEEETTEEEEEE--SS
T ss_pred eeecccccchHHHHHHHHhhCCeeEeecCCCceEEEeeCCC
Confidence 4999999999999999998432 345667666663
No 37
>PF13152 DUF3967: Protein of unknown function (DUF3967)
Probab=20.46 E-value=76 Score=20.43 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.0
Q ss_pred hhHHHHHhHHhhhhh
Q 020331 69 DANVFELIQKHQEAA 83 (327)
Q Consensus 69 ~~~~~~~~r~~~~~~ 83 (327)
|+.+|++|||.|+..
T Consensus 6 D~~Lm~~iREiQE~K 20 (34)
T PF13152_consen 6 DEQLMQTIREIQETK 20 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456999999999743
Done!