Citrus Sinensis ID: 020332

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSRSLSSKFIFLFCFLFPNLIYLLFNKIIKFFVLTVTWMRMGNS
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccHHHccccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEccEEEEEccHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcHHHHccccccccccccccccccHHHHHHHcccccccccccccEEEcccccccHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHccccEEEcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mpgltcnscnrefnddaeqklhyksdwhrynlkrkvagvpgvTEALFLARQAALAQEknknatpmtyscglcgkgyrsSKALAQHLNSRShimrasqgtsneekekviikpiplrdvnkpprkreanneesedsddeweevgpdevLVSEATnsltnlnvgspadddleeddddgafeefdpaccfmcdlphdaiENCMVHMhkchgffipdveylkdpkglLTYLGLKvkrdfmclycndrchpfnsLEAVRKHMEAKRhckihfgdgddeeEAELEEFydyssrslsSKFIFLFCFLFPNLIYLLFNKIIKFFVLTVTWMRMGNS
Flexible Loop (DISEMBL)
MPGLTCNSCNREFNDDAEQKlhyksdwhrynLKRKVAGVPGVTEALFLARQAALAqeknknatpmTYSCGLCGKGYRSSKALAQHLNSRSHImrasqgtsneekekviikpiplrdvnkpprkreanneesedsddeweeVGPDEVLVSeatnsltnlnvgspaddDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSRSLSSKFIFLFCFLFPNLIYLLFNKIIKFFVLTVTWMRMGNS
Low Complexity Region (SEG)
MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEalflarqaalaqEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNeesedsddeweeVGPDEVLVSEATNSLTNLNVGSPadddleeddddgafeefdPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHfgdgddeeeaeleefydySSRSLSSKFIFLFCFLFPNLIYLLFNKIIKFFVLTVTWMRMGNS
Disordered region (IsUnstruct)
*******************KLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQ*****ATPMTYSCGLCGKGY******************************************************************************************************EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFG*********LEEFYDYSSRSLSSKFIFLFCFLFPNLIYLLFNKIIKFFVLTVTWMR****
Disordered Region (DISOPRED)
*PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSC****************************************************************************************LNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSRSLS***************YLLFNKIIKFFVLTVTWMRMG**
Disordered Region (DISEMBL)
MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHI************EKVIIKPIPLRDVNK**********************GPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSRSLSSKFIFLFCFLFPNLIYLLFNKIIKFFVLTVTWMRMGNS
Disordered Region (DISPRO)
*PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSN****************************************************************************EEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSRSLSSKFIFLFCFLFPNLIYLLFNKIIKFFVLTVTWMRMG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSRSLSSKFIFLFCFLFPNLIYLLFNKIIKFFVLTVTWMRMGNS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q91VY9	476	Zinc finger protein 622 O	yes	no	0.853	0.586	0.311	7e-34
O59811	463	Zinc finger protein C550.	yes	no	0.819	0.578	0.287	6e-30
Q7TM96	386	Zinc finger protein 622 O	no	no	0.299	0.253	0.465	2e-18
Q06709	432	Zinc finger protein REH1	yes	no	0.816	0.618	0.274	3e-18
Q969S3	477	Zinc finger protein 622 O	yes	no	0.299	0.205	0.465	3e-18
Q90Y35	405	Zinc finger protein 622 O	yes	no	0.299	0.241	0.435	3e-17
P38344	393	Pre-60S factor REI1 OS=Sa	no	no	0.131	0.109	0.558	3e-07
Q9H8Y5	726	Ankyrin repeat and zinc f	no	no	0.113	0.050	0.459	0.0003
Q66H85	722	Ankyrin repeat and zinc f	no	no	0.134	0.060	0.409	0.0003
Q80UU1	748	Ankyrin repeat and zinc f	no	no	0.134	0.058	0.409	0.0004

>sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1

 Score =  144 bits (364), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 149/356 (41%), Gaps = 77/356 (21%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLAR---QAALAQE 57
           M  LTC +C   F D   Q+ HYK+DWHRYNL+RKVA +  VT   F  R   Q A+A+ 
Sbjct: 1   MAALTCITCRVAFRDAELQRAHYKTDWHRYNLRRKVAAMAPVTAEGFQERVRAQRAVAEA 60

Query: 58  KNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSH-------------------------- 91
              +    TY C  CGK + +  A   HL SR H                          
Sbjct: 61  AEASKGAATY-CTACGKKFATFNAYENHLGSRRHAELERKAVRAASRRVELLNAKNLEKG 119

Query: 92  --------------IMRASQGTSNEEKEKVIIKP-------------IPLRD-VNKPPRK 123
                         I +A +   +   +K    P             +P RD   KPPR 
Sbjct: 120 LGADGVDKDAVNAAIQQAIKAQPSTSPKKAPFVPTDECGRAAAGARGVPERDPTEKPPRL 179

Query: 124 REANNEESEDSDDEWEEVGPDEVLVSEATNSLT--------NLNVGSPADDDLEEDDDDG 175
           +    +  + +  +WE+   +     E               L    P  +D  +D +D 
Sbjct: 180 QWFEQQAKKLAKQQWEDGEEEGEEEEEDDEDEDWEDIDSDDGLECEDPGVED--QDAEDA 237

Query: 176 AFEEFDPAC------CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLK 229
           A EE  P        C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG K
Sbjct: 238 AAEESPPLGAIPITDCLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEK 297

Query: 230 VKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           V    +CL+CN++   F S EAV+ HM  K HCK+ F DGD     E  +FYD+ S
Sbjct: 298 VGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRS 350

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.
Mus musculus (taxid: 10090)

>sp|O59811|YJVF_SCHPO Zinc finger protein C550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1

 Score =  131 bits (330), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 140/317 (44%), Gaps = 49/317 (15%)

Query: 3   GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQ--EKNK 60
              C +C   FN+   QK+H+KSDWH YNLKRKVA +P ++  +F  +  ++ +  E+ +
Sbjct: 4   SFACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQNEEVQ 63

Query: 61  NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKP 120
                  +C +C K + S  A + H+ S+ H    S+   N       IK +   D +  
Sbjct: 64  KKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLSKFQRNSR-----IKKLQSEDASSI 118

Query: 121 PRKREANNEESEDSDDEWEEVGPDEVLVSEATN---SLTNLNV----------------- 160
                +  E   DS     E+  +E L S+ T+   SL+NL++                 
Sbjct: 119 ASSTLSMGEPVVDS-----EIEEEEDLASQLTSRAISLSNLSLHGRESEPSKTELATSIP 173

Query: 161 ------------GSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGF 208
                         P  +++E +    + +   P  C  C     + + C  HM   H  
Sbjct: 174 QSNEASKSHLFTQEPTPEEIEAELARRSSQRLSPRDCLFCAASFSSFDTCKKHMKASHSL 233

Query: 209 FIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGD 268
           +IP+ EYL D   L  YL  K+   F CL CN     F SLEAVR HM+ K H  I +  
Sbjct: 234 YIPEREYLVDEPSLFDYLAEKISIGFTCLTCN---REFKSLEAVRAHMQQKGHTSIAYDT 290

Query: 269 GDDEEEAELEEFYDYSS 285
            D  E+ EL +FYD+++
Sbjct: 291 ED--EQLELSDFYDFTT 305

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7TM96|ZN622_RAT Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
           C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct: 247 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 306

Query: 245 PFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ S
Sbjct: 307 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRS 344

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Rattus norvegicus (taxid: 10116)

>sp|Q06709|REH1_YEAST Zinc finger protein REH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REH1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 24/291 (8%)

Query: 4   LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNAT 63
            TCN C  +F     Q+ H K++WHRYNLKR++A +P +    F  +     +E+ +N  
Sbjct: 6   FTCNCCVIQFKTSDLQRYHMKTEWHRYNLKRRIANLPPIGAEQFAEKLQISEKEQAENQV 65

Query: 64  PMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRK 123
              +   +       S AL Q         R  +  +N  K K        RD+ K  + 
Sbjct: 66  D-EFGFPVLKPVMNQSNALPQKQKKPIKSKRGRKVGTNLLKRKD-------RDIAKEKQN 117

Query: 124 REANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGS-------PADDDLEEDD--DD 174
           R  +   S  S      VG +        ++++     S        +D++L+  D   D
Sbjct: 118 RSVSPSGSISSQLSNLTVGTENTNTDYGEDTVSEYGFTSDSNYEYATSDEELDIADKPSD 177

Query: 175 GAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDF 234
              E+     C  C   +  +E  + HM   HG FIP+  YL D  GLL +L   +  D 
Sbjct: 178 KENEKITITECIYCGKDNKEVERNVKHMFSEHGLFIPERSYLIDLNGLLEFLIKMIVIDH 237

Query: 235 MCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAEL-EEFYDYS 284
            CL CN      + LE++R HM +KRHC++ +   + +EE +L   FYD++
Sbjct: 238 NCLCCN---FHGSGLESIRAHMASKRHCRLPY---ETKEERQLFAPFYDFT 282

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
           C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct: 254 CLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGK 313

Query: 245 PFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ S
Sbjct: 314 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRS 351

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Homo sapiens (taxid: 9606)

>sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
           C  C      +   + HM K H FFIPD+EYL D +GL+ YLG K+    +C++CN++  
Sbjct: 246 CLFCSHHSRTLMKNVAHMTKVHSFFIPDIEYLVDLRGLIKYLGEKIGVGKICIWCNEKGK 305

Query: 245 PFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ S
Sbjct: 306 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRS 343

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Gallus gallus (taxid: 9031)

>sp|P38344|REI1_YEAST Pre-60S factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REI1 PE=1 SV=3

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 5  TCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALF 47
          TCNSC   F+   EQ+ H KSDWHRYNLKR+VA +P ++   F
Sbjct: 8  TCNSCVLTFDSSDEQRAHMKSDWHRYNLKRRVAQLPPISFETF 50

Pre-60S-associated cytoplasmic factor invoved in the dissociation and recycling of other late pre-60S factors like ARX1, TIF6 and ALB1 before newly synthesized large ribosomal subunits enter translation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9H8Y5|ANKZ1_HUMAN Ankyrin repeat and zinc finger domain-containing protein 1 OS=Homo sapiens GN=ANKZF1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query: 4   LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVP 40
           L C++C++ F +  EQ+ HYK DWHR+NLK+++   P
Sbjct: 72  LFCSTCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKP 108

Involved in the endoplasmic reticulum (ER)-associated degradation (ERAD) pathway.

Homo sapiens (taxid: 9606)

>sp|Q66H85|ANKZ1_RAT Ankyrin repeat and zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Ankzf1 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 4   LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALF 47
           L C++C++ F +  EQ+ HYK DWHR+NLK+++   P ++ + F
Sbjct: 70  LFCSACDQVFQNHQEQREHYKLDWHRFNLKQRLKNKPLLSASDF 113

Involved in the endoplasmic reticulum (ER)-associated degradation (ERAD) pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q80UU1|ANKZ1_MOUSE Ankyrin repeat and zinc finger domain-containing protein 1 OS=Mus musculus GN=Ankzf1 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 31/44 (70%)

Query: 4   LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALF 47
           L C++C++ F +  EQ+ HYK DWHR+NLK+++   P ++ + F
Sbjct: 96  LFCSACDQIFQNHQEQREHYKLDWHRFNLKQRLKNKPLLSASDF 139

Involved in the endoplasmic reticulum (ER)-associated degradation (ERAD) pathway.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
356563786	407	PREDICTED: zinc finger protein 622-like	0.859	0.690	0.742	1e-110
225429787	411	PREDICTED: zinc finger protein 622 [Viti	0.862	0.686	0.711	1e-108
255574095	407	transcription factor, putative [Ricinus	0.859	0.690	0.737	1e-108
356539178	407	PREDICTED: zinc finger protein 622-like	0.859	0.690	0.742	1e-108
356563788	407	PREDICTED: zinc finger protein 622-like	0.859	0.690	0.735	1e-107
388507466	410	unknown [Lotus japonicus]	0.868	0.692	0.724	1e-107
388508652	410	unknown [Lotus japonicus]	0.868	0.692	0.724	1e-107
302398699	405	C2H2L domain class transcription factor	0.850	0.686	0.758	1e-106
224121192	408	predicted protein [Populus trichocarpa]	0.865	0.693	0.740	1e-104
296081767	376	unnamed protein product [Vitis vinifera]	0.758	0.659	0.651	1e-101

>gi|356563786|ref|XP_003550140.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/287 (74%), Positives = 243/287 (84%), Gaps = 6/287 (2%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           MPGLTCN+CN EF DD EQKLHYKS+WHRYNLKRKVAGVPGVTEALFLARQ+ LAQEKNK
Sbjct: 1   MPGLTCNACNTEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQEKNK 60

Query: 61  -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
              TPM Y+CGLCGK Y+SSKA A+HL SR H+MRAS+GTS+ + EK I+KP+P R VN+
Sbjct: 61  LGETPMLYTCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSHAD-EKAIVKPLPQRVVNR 119

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADD-DLEEDDDDGAFE 178
           PP +RE +N E+E+S+DEWEEV P+E LV  A  SLT+LNV    ++ D+E DDD   FE
Sbjct: 120 PPPRREVDNSENEESEDEWEEVDPEEDLVDGAAKSLTDLNVNEHGENVDMEVDDD---FE 176

Query: 179 EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY 238
           E DP+CCFMCD  H  IENCMVHMHK HGFFIPDVEYLKDPKGLLTYLGLKVKRD+MCLY
Sbjct: 177 ELDPSCCFMCDQEHKTIENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLY 236

Query: 239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           CNDRC+PF+SLEAVRKHMEAK HCK+H+GDG D+EE ELEEFYDYSS
Sbjct: 237 CNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGVDDEEVELEEFYDYSS 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429787|ref|XP_002282746.1| PREDICTED: zinc finger protein 622 [Vitis vinifera]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/288 (71%), Positives = 234/288 (81%), Gaps = 6/288 (2%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           M  LTCN+CN+EF  +++QKLHYKSDWHRYNLKRK+AGVPGVTEAL+LARQ++LA+EKN+
Sbjct: 1   MATLTCNACNKEFIGESDQKLHYKSDWHRYNLKRKIAGVPGVTEALYLARQSSLAEEKNR 60

Query: 61  -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
            N TPM YSC LCGKGYRSSKAL QHL SRSHI+RASQ  S++++E  IIKP+  R  NK
Sbjct: 61  LNETPMLYSCSLCGKGYRSSKALGQHLKSRSHILRASQRASHQDEETTIIKPLTHRTANK 120

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGA-FE 178
           PP +RE  NEESED    WEEV PDE LV EAT S+T +NV   A +D  ++ DD   FE
Sbjct: 121 PPPQREPVNEESEDE---WEEVNPDEDLVGEATESITQMNVNEHASNDDMDESDDDDDFE 177

Query: 179 -EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCL 237
            + DP CCFMCD   + IE C+VHMHK HGFFIPDVEYLKDPKGLLTYLGLKV RDFMCL
Sbjct: 178 IKLDPTCCFMCDQEQNTIERCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVTRDFMCL 237

Query: 238 YCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           YCND CHPFNSLEAVRKHM AK HCK+H+GDG D+EEAELEEFYDYSS
Sbjct: 238 YCNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGGDDEEAELEEFYDYSS 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574095|ref|XP_002527963.1| transcription factor, putative [Ricinus communis] gi|223532589|gb|EEF34375.1| transcription factor, putative [Ricinus communis]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/286 (73%), Positives = 239/286 (83%), Gaps = 5/286 (1%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           M GLTCN+CN+EFNDDA+QKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQ+ L QEK+K
Sbjct: 1   MGGLTCNACNKEFNDDADQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQSVLVQEKDK 60

Query: 61  NA-TPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
           ++ TPM YSC LCGKGYRSSKA AQHL SRSHI+RASQG +NE ++  +IKP+P R +NK
Sbjct: 61  SSETPMLYSCVLCGKGYRSSKAHAQHLKSRSHILRASQG-ANENEDTAVIKPLPRRIMNK 119

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEE 179
            P +R   +EESEDS DEWEEV P+E LV +A+ SLT L+V    +   E+ D+    E 
Sbjct: 120 RPPQRAVEDEESEDSGDEWEEVDPEEELVGDASKSLTGLSVN---ETSDEDMDEGEDDEL 176

Query: 180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYC 239
            DP+CCFMCD  H  +E+CMVHMHK HGFFIPDVEYLKDPK LLTYLGLKVKRDFMCLYC
Sbjct: 177 LDPSCCFMCDQQHGNVESCMVHMHKQHGFFIPDVEYLKDPKSLLTYLGLKVKRDFMCLYC 236

Query: 240 NDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           NDRCHPFNSLEAVRKHM AK HCK+H+GDGDDEEEAELEEFYDYSS
Sbjct: 237 NDRCHPFNSLEAVRKHMAAKGHCKVHYGDGDDEEEAELEEFYDYSS 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539178|ref|XP_003538077.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/287 (74%), Positives = 245/287 (85%), Gaps = 6/287 (2%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           MPGLTCN+CN EF DD EQKLHYKS+WHRYNLKRKVAGVPGVTEALFLARQ+ LAQEKNK
Sbjct: 1   MPGLTCNACNTEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQEKNK 60

Query: 61  -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
              TPM YSCGLCGK Y+SSKA A+HL SR H+M+AS+GTS+ + EK I+KP+P R VN+
Sbjct: 61  LGETPMLYSCGLCGKDYKSSKAHAEHLKSRGHMMQASEGTSHAD-EKAIVKPLPQRVVNR 119

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADD-DLEEDDDDGAFE 178
           PP +RE +N E+E+S+DEWEEV P+E LV  A  SLT+LNV    ++ D+E DDD   FE
Sbjct: 120 PPPRREVDNSENEESEDEWEEVDPEEDLVDGAAKSLTDLNVNEHGENVDMEVDDD---FE 176

Query: 179 EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY 238
           E DP+CCFMCD  H +IENCMVHMHK HGFFIPDVEYLKDPKGLLTYLGLKVKRD+MCLY
Sbjct: 177 ELDPSCCFMCDQEHKSIENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLY 236

Query: 239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           CNDRC+PF+SLEAVRKHMEAK HCK+H+GDGDD+EE EL+EFYDYSS
Sbjct: 237 CNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDDEEVELDEFYDYSS 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563788|ref|XP_003550141.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/287 (73%), Positives = 244/287 (85%), Gaps = 6/287 (2%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           MPGLTCN+CN +F DD EQKLHYKS+WHRYNLKRKVAGVPGVTEALFLARQ+ LAQEKNK
Sbjct: 1   MPGLTCNACNTKFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVLAQEKNK 60

Query: 61  -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
              TPM Y+CGLCGK Y+SSKA A+HL SR H+MRAS+GTS+ + EK I+KP+P R VN+
Sbjct: 61  LGETPMLYTCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSHAD-EKAIVKPLPQRVVNR 119

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADD-DLEEDDDDGAFE 178
           PP KRE +N E+E+S+DEWEEV P+E LV  A  SLT+LNV    ++ D+E DDD   FE
Sbjct: 120 PPPKREVDNSENEESEDEWEEVDPEEDLVDGAAKSLTDLNVNEHGENVDMEVDDD---FE 176

Query: 179 EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY 238
           E DP+CCFMCD  H  IE+CMVHMHK HGFFIPDVEYLKDPKGLLTYLGLKVK+D+MCLY
Sbjct: 177 ELDPSCCFMCDQEHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKKDYMCLY 236

Query: 239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           CNDRC+PF+SLEAVRKHMEAK HCK+H+GDGDD+EE EL+EFYDYSS
Sbjct: 237 CNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDDEEVELDEFYDYSS 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507466|gb|AFK41799.1| unknown [Lotus japonicus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/287 (72%), Positives = 238/287 (82%), Gaps = 3/287 (1%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           MPGLTCN+CN EF DDA+QKLHYKS+WHRYNLKRKVAGVPGVTEALFLARQAALA+EK+K
Sbjct: 1   MPGLTCNACNTEFIDDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAEEKDK 60

Query: 61  -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
            N T M YSCGLCGKGY+SSKA A+HL SR H+MR S+GTS  + EK I+KP+P R  N+
Sbjct: 61  ANETAMLYSCGLCGKGYKSSKAHAEHLKSRGHLMRVSEGTSQSD-EKAIVKPLPQRSANR 119

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEE 179
           PP +RE    E  +S+DEWEEV P++ LV +A  SLT +NV   AD+D + D+DD    E
Sbjct: 120 PPPRREVQVSEDGESEDEWEEVDPEDDLVGDAAKSLTEMNVDEDADNDDDMDEDDDDTFE 179

Query: 180 FD-PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY 238
              PACCFMCD  H+ IENCMVHMHK HGFFIPD+EYLKDPKGLLTYLGLKVKRD+MCLY
Sbjct: 180 ELDPACCFMCDQGHNTIENCMVHMHKHHGFFIPDIEYLKDPKGLLTYLGLKVKRDYMCLY 239

Query: 239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           CNDRC+PF+SLEAVRKHM AK HCK+HFGDGDDEEE ELE+FYDYSS
Sbjct: 240 CNDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDDEEEVELEDFYDYSS 286

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508652|gb|AFK42392.1| unknown [Lotus japonicus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/287 (72%), Positives = 238/287 (82%), Gaps = 3/287 (1%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           MPGLTCN+CN EF DDA+QKLHYKS+WHRYNLKRKVAGVPGVTEALFLARQAALA+EK+K
Sbjct: 1   MPGLTCNACNTEFIDDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAEEKDK 60

Query: 61  -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
            N T M YSCGLCGKGY+SSKA A+HL SR H+MR S+GTS  + EK I+KP+P R  N+
Sbjct: 61  ANETAMLYSCGLCGKGYKSSKAHAEHLKSRGHLMRVSEGTSQSD-EKAIVKPLPQRSANR 119

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEE 179
           PP +RE    E  +S+DEWEEV P++ LV +A  SLT +NV   AD+D + D+DD    E
Sbjct: 120 PPPRREVQVSEDGESEDEWEEVDPEDDLVGDAAKSLTEMNVDEDADNDDDMDEDDDDTFE 179

Query: 180 FD-PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY 238
              PACCFMCD  H+ IENCMVHMHK HGFFIPD+EYLKDPKGLLTYLGLKVKRD+MCLY
Sbjct: 180 ELDPACCFMCDQGHNTIENCMVHMHKHHGFFIPDIEYLKDPKGLLTYLGLKVKRDYMCLY 239

Query: 239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           CNDRC+PF+SLEAVRKHM AK HCK+HFGDGDDEEE ELE+FYDYSS
Sbjct: 240 CNDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDDEEEVELEDFYDYSS 286

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398699|gb|ADL36644.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/286 (75%), Positives = 244/286 (85%), Gaps = 8/286 (2%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           M GLTCNSCN+EF DD+EQKLHYKS+WHRYNLKRK+AGVPGVTEALF+ARQAALAQEKN 
Sbjct: 1   MSGLTCNSCNKEFLDDSEQKLHYKSEWHRYNLKRKIAGVPGVTEALFIARQAALAQEKNS 60

Query: 61  -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
            + TPM YSCGLCGKGYRSSKA A+HL SRSHI+RASQG S E++EK II+P+P R VNK
Sbjct: 61  LSETPMLYSCGLCGKGYRSSKAHAEHLKSRSHILRASQGAS-EQEEKAIIRPLPPRVVNK 119

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEE 179
            P KREAN+EE+E+S+DEW EV PDE L      SLT++NV   A ++  ++DD   FEE
Sbjct: 120 APPKREANDEETEESEDEWVEVDPDEDLA----KSLTDMNVDEHASEEDMDEDD--DFEE 173

Query: 180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYC 239
            DP CCFMCDL HD +E+CMVHMHK HGFFIPD+EYLKDPKGLLTYLGLKVKRDFMCLYC
Sbjct: 174 LDPTCCFMCDLEHDTLESCMVHMHKHHGFFIPDIEYLKDPKGLLTYLGLKVKRDFMCLYC 233

Query: 240 NDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           NDR HPFNSLEAVRKHM AK HCK+H+GD DDEEEAELEEFYDYSS
Sbjct: 234 NDRRHPFNSLEAVRKHMVAKSHCKVHYGDDDDEEEAELEEFYDYSS 279

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121192|ref|XP_002330766.1| predicted protein [Populus trichocarpa] gi|222872568|gb|EEF09699.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/285 (74%), Positives = 243/285 (85%), Gaps = 2/285 (0%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           MPGLTCN+CN+EF+DDAEQKLHYKS+WHRYNLKRKVAGVPGVTEALF+ARQ+A+A+EK K
Sbjct: 1   MPGLTCNACNKEFDDDAEQKLHYKSEWHRYNLKRKVAGVPGVTEALFVARQSAIAKEKEK 60

Query: 61  NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKP 120
           N TPM YSC LC KGYRSSKA  QHL SRSHI+RASQGT N+E+E  +IKP+P R+VNK 
Sbjct: 61  NETPMLYSCVLCNKGYRSSKAHDQHLKSRSHILRASQGT-NQEEENTVIKPLPRREVNKR 119

Query: 121 PRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEF 180
             +REA+ +ESE+S+DEWEEV  DE LV+EAT SLT LNV   A  D   +DD+      
Sbjct: 120 VVQREADVKESEESEDEWEEVDSDEELVAEATKSLTGLNVNEMASLDDIVEDDE-DDVLL 178

Query: 181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCN 240
           DP+CCF+CD  HD IE+CMVHMHK HGFFIPDVEYLKDP+GLLTYLGLKVKRDFMCLYCN
Sbjct: 179 DPSCCFVCDQEHDNIESCMVHMHKQHGFFIPDVEYLKDPQGLLTYLGLKVKRDFMCLYCN 238

Query: 241 DRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           D+  PFNSLEAVRKHMEAK HCK+H+GDGD++EEAELE+FYDYSS
Sbjct: 239 DKRQPFNSLEAVRKHMEAKSHCKVHYGDGDEDEEAELEDFYDYSS 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081767|emb|CBI20772.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/287 (65%), Positives = 212/287 (73%), Gaps = 39/287 (13%)

Query: 1   MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK 60
           M  LTCN+CN+EF  +++QKLHYKSDWHRYNLKRK+AGVPGVTEAL+LARQ++LA+EKN+
Sbjct: 1   MATLTCNACNKEFIGESDQKLHYKSDWHRYNLKRKIAGVPGVTEALYLARQSSLAEEKNR 60

Query: 61  -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNK 119
            N TPM YSC LCGKGYRSSKAL QHL SRSHI+RASQ  S++++E  IIKP+  R  NK
Sbjct: 61  LNETPMLYSCSLCGKGYRSSKALGQHLKSRSHILRASQRASHQDEETTIIKPLTHRTANK 120

Query: 120 PPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFE- 178
           PP +RE  NEESED DD+                                       FE 
Sbjct: 121 PPPQREPVNEESEDDDDDD-------------------------------------DFEI 143

Query: 179 EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY 238
           + DP CCFMCD   + IE C+VHMHK HGFFIPDVEYLKDPKGLLTYLGLKV RDFMCLY
Sbjct: 144 KLDPTCCFMCDQEQNTIERCIVHMHKQHGFFIPDVEYLKDPKGLLTYLGLKVTRDFMCLY 203

Query: 239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
           CND CHPFNSLEAVRKHM AK HCK+H+GDG D+EEAELEEFYDYSS
Sbjct: 204 CNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGGDDEEAELEEFYDYSS 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2128161	405	AT4G31420 [Arabidopsis thalian	0.785	0.634	0.563	4.8e-78
TAIR|locus:2061087	395	FZF [Arabidopsis thaliana (tax	0.256	0.212	0.809	1.1e-76
UNIPROTKB|F1N194	470	ZNF622 "Uncharacterized protei	0.244	0.170	0.487	2e-33
FB|FBgn0030878	409	CG6769 [Drosophila melanogaste	0.244	0.195	0.530	1.7e-32
RGD|1309146	386	Zfp622 "zinc finger protein 62	0.244	0.207	0.475	1.9e-32
UNIPROTKB|F1LQ57	475	Fam134b "Protein FAM134B" [Rat	0.244	0.168	0.475	6.3e-32
MGI|MGI:1289282	476	Zfp622 "zinc finger protein 62	0.244	0.168	0.475	1e-31
UNIPROTKB|E2R1D3	458	ZNF622 "Uncharacterized protei	0.244	0.174	0.475	1.1e-31
UNIPROTKB|F1M7M5	745	Fam134b "Protein FAM134B" [Rat	0.244	0.107	0.475	3.5e-31
UNIPROTKB|Q969S3	477	ZNF622 "Zinc finger protein 62	0.244	0.167	0.475	5.8e-31

TAIR|locus:2128161 AT4G31420 [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 151/268 (56%), Positives = 176/268 (65%)

Query:     1 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEXXXXXXXXXXXXEKNK 60
             MPGLTCN+CN EF D+ E+ LHYKSDWHRYNLKRKVAGVPGVTE            EKNK
Sbjct:     1 MPGLTCNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTEALFEARQSALAQEKNK 60

Query:    61 -NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTS-NEEKEKVIIKPIPLRDVN 118
              N  PM Y+C +C KGYRSSKA  QHL SRSH++R SQGTS N E++  II+ +P     
Sbjct:    61 SNEAPMLYTCAICAKGYRSSKAHEQHLQSRSHVLRVSQGTSINGEEDIAIIRQLP----- 115

Query:   119 KPPRKREANNXXXXXXXXXXXXVGPDEVLVSE-ATNSLTNLNVGSPXXXXXXXXXXXXXX 177
                R+ +               V  DE L +E A++SL+ LNV                 
Sbjct:   116 ---RRVQHRGSIDDDSEDEWVEVDSDEELAAEEASDSLSKLNVNESGSAEDMDDDGDADK 172

Query:   178 XXXXPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCL 237
                 P CC MCD  H  +E+CM+HMHK HGFFIPD+EYLKDP+GLLTYLGLKVKRDFMCL
Sbjct:   173 YELDPTCCLMCDKKHKTLESCMLHMHKHHGFFIPDIEYLKDPEGLLTYLGLKVKRDFMCL 232

Query:   238 YCNDRCHPFNSLEAVRKHMEAKRHCKIH 265
             YCN+ C PF+SLEAVRKHMEAK HCK+H
Sbjct:   233 YCNELCRPFSSLEAVRKHMEAKSHCKLH 260

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2061087 FZF [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
 Identities = 68/84 (80%), Positives = 74/84 (88%)

Query:   182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCND 241
             PACC MCD  H  IE CMVHMHK HGFFIPD+EYLKDPKG LTYLGLKVKRDF+CLYCN+
Sbjct:   170 PACCLMCDKKHKTIEKCMVHMHKFHGFFIPDIEYLKDPKGFLTYLGLKVKRDFVCLYCNE 229

Query:   242 RCHPFNSLEAVRKHMEAKRHCKIH 265
              CHPF+SLEAVRKHM+AK HCK+H
Sbjct:   230 LCHPFSSLEAVRKHMDAKGHCKVH 253

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|F1N194 ZNF622 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
 Identities = 39/80 (48%), Positives = 49/80 (61%)

Query:   185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
             C  C     ++   + HM K H FFIPDVEYL D KGL+ YLG KV    +CL+CN+R  
Sbjct:   247 CLFCPHHSSSLTKNVAHMTKVHSFFIPDVEYLSDLKGLIKYLGEKVGVGKICLWCNERGK 306

Query:   245 PFNSLEAVRKHMEAKRHCKI 264
              F S EAV+ HM  + HCK+
Sbjct:   307 SFYSTEAVQAHMNDRSHCKL 326

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0033674 "positive regulation of kinase activity" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0030878 CG6769 [Drosophila melanogaster (taxid:7227)]

 Score = 217 (81.4 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
 Identities = 43/81 (53%), Positives = 51/81 (62%)

Query:   184 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRC 243
             C F      D +EN + HM   H FFIPD EY  D +GLL YLG KV   F+CL+CNDR 
Sbjct:   191 CLFCTHASEDLVEN-LKHMSVAHSFFIPDTEYCTDIEGLLYYLGEKVANYFICLFCNDRG 249

Query:   244 HPFNSLEAVRKHMEAKRHCKI 264
               F SL+AVRKHM  K HC++
Sbjct:   250 KTFYSLDAVRKHMIDKGHCQM 270

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1309146 Zfp622 "zinc finger protein 622" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
 Identities = 38/80 (47%), Positives = 49/80 (61%)

Query:   185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   247 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 306

Query:   245 PFNSLEAVRKHMEAKRHCKI 264
              F S EAV+ HM  K HCK+
Sbjct:   307 SFYSTEAVQAHMNDKSHCKL 326

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=ISO

GO:0033674 "positive regulation of kinase activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO

GO:0046330 "positive regulation of JNK cascade" evidence=ISO

UNIPROTKB|F1LQ57 Fam134b "Protein FAM134B" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 6.3e-32, Sum P(2) = 6.3e-32
 Identities = 38/80 (47%), Positives = 49/80 (61%)

Query:   185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   252 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 311

Query:   245 PFNSLEAVRKHMEAKRHCKI 264
              F S EAV+ HM  K HCK+
Sbjct:   312 SFYSTEAVQAHMNDKSHCKL 331

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0033674 "positive regulation of kinase activity" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

MGI|MGI:1289282 Zfp622 "zinc finger protein 622" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
 Identities = 38/80 (47%), Positives = 49/80 (61%)

Query:   185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   253 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 312

Query:   245 PFNSLEAVRKHMEAKRHCKI 264
              F S EAV+ HM  K HCK+
Sbjct:   313 SFYSTEAVQAHMNDKSHCKL 332

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=ISO

GO:0033674 "positive regulation of kinase activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO

GO:0046330 "positive regulation of JNK cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2R1D3 ZNF622 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 38/80 (47%), Positives = 49/80 (61%)

Query:   185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   238 CLFCPHHSSSLMKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 297

Query:   245 PFNSLEAVRKHMEAKRHCKI 264
              F S EAV+ HM  K HCK+
Sbjct:   298 SFYSTEAVQAHMNDKSHCKL 317

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1M7M5 Fam134b "Protein FAM134B" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
 Identities = 38/80 (47%), Positives = 49/80 (61%)

Query:   185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   611 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 670

Query:   245 PFNSLEAVRKHMEAKRHCKI 264
              F S EAV+ HM  K HCK+
Sbjct:   671 SFYSTEAVQAHMNDKSHCKL 690

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q969S3 ZNF622 "Zinc finger protein 622" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
 Identities = 38/80 (47%), Positives = 49/80 (61%)

Query:   185 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 244
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   254 CLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGK 313

Query:   245 PFNSLEAVRKHMEAKRHCKI 264
              F S EAV+ HM  K HCK+
Sbjct:   314 SFYSTEAVQAHMNDKSHCKL 333

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IMP

GO:0043410 "positive regulation of MAPK cascade" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0033674 "positive regulation of kinase activity" evidence=IDA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
pfam12756	100	pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 cop	2e-36
PTZ00448	373	PTZ00448, PTZ00448, hypothetical protein; Provisio	0.002

>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies)

 Score =  126 bits (318), Expect = 2e-36
 Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 5/102 (4%)

Query: 184 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRC 243
            C  C+   D +E  + HM K HGFFIP+ EYL D +GLL YL  K+     CLYC  + 
Sbjct: 1   DCLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIHEGNECLYCGKQ- 59

Query: 244 HPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSS 285
             F SLEA+R+HM  K HCKI +    +EE+ E+ EFYD+SS
Sbjct: 60  --FKSLEALRQHMRDKGHCKIPY--ETEEEKDEIAEFYDFSS 97

This family contains two copies of a C2H2-like zinc finger domain. Length = 100

>gnl|CDD|185627 PTZ00448, PTZ00448, hypothetical protein; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 4   LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQ 51
           L C  CN +  D    K HY+S+WH +N KR    +  ++E  FL  Q
Sbjct: 315 LLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEFLELQ 362

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	100.0
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	99.73
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	99.63
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.46
PTZ00448	373	hypothetical protein; Provisional	99.46
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	99.27
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.24
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.13
KOG3608	467	consensus Zn finger proteins [General function pre	99.0
KOG3576	267	consensus Ovo and related transcription factors [T	98.79
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	98.74
KOG2505	591	consensus Ankyrin repeat protein [General function	98.59
KOG3608	467	consensus Zn finger proteins [General function pre	98.55
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.41
KOG3576	267	consensus Ovo and related transcription factors [T	98.36
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.36
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.34
PHA00733	128	hypothetical protein	98.11
PHA02768	55	hypothetical protein; Provisional	98.06
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.91
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.86
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.8
PHA00733	128	hypothetical protein	97.78
PHA00732	79	hypothetical protein	97.73
PHA02768	55	hypothetical protein; Provisional	97.62
KOG3993	500	consensus Transcription factor (contains Zn finger	97.56
PHA00732	79	hypothetical protein	97.52
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.48
PLN03086	567	PRLI-interacting factor K; Provisional	97.38
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.24
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.2
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.96
PHA00616	44	hypothetical protein	96.93
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.8
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.68
PHA00616	44	hypothetical protein	96.65
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.62
KOG3993	500	consensus Transcription factor (contains Zn finger	96.59
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.56
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.46
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.46
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.31
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.21
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	95.96
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	95.88
KOG1146	1406	consensus Homeobox protein [General function predi	95.78
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	95.77
smart00355	26	ZnF_C2H2 zinc finger.	95.43
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	95.43
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.66
PLN03086	567	PRLI-interacting factor K; Provisional	93.18
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	92.66
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	92.64
smart00355	26	ZnF_C2H2 zinc finger.	92.36
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	92.26
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	91.48
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	91.46
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	90.24
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	89.3
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	88.75
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	88.71
COG5236	493	Uncharacterized conserved protein, contains RING Z	88.18
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	88.18
PLN02748	468	tRNA dimethylallyltransferase	87.62
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	87.44
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	87.31
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	87.14
COG5236	493	Uncharacterized conserved protein, contains RING Z	86.44
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	84.89
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	84.86
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	84.3
KOG2893	341	consensus Zn finger protein [General function pred	83.53
COG5189	423	SFP1 Putative transcriptional repressor regulating	82.37
PF13821	55	DUF4187: Domain of unknown function (DUF4187)	81.0
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	80.87
COG4049	65	Uncharacterized protein containing archaeal-type C	80.45
KOG1146	1406	consensus Homeobox protein [General function predi	80.38
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	80.3

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=2.5e-66  Score=491.01  Aligned_cols=280  Identities=42%  Similarity=0.703  Sum_probs=217.3

Q ss_pred             CCCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhh--cCCCCeeecCCcCCcccC
Q 020332            1 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK--NATPMTYSCGLCGKGYRS   78 (327)
Q Consensus         1 ~~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~--h~~~~~~~C~~C~K~F~s   78 (327)
                      |+.|+|++|.+.|.+.+.||.||+|||||||||||||++|||+.+.|+.++.+.+..+..  ..++.++.|.+|+|+|.+
T Consensus         1 st~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s   80 (390)
T KOG2785|consen    1 STGFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFAS   80 (390)
T ss_pred             CCcceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccC
Confidence            788999999999999999999999999999999999999999999999998666554333  346788999999999999


Q ss_pred             hHHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhccccccc
Q 020332           79 SKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNL  158 (327)
Q Consensus        79 ~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~~  158 (327)
                      .+++.+||.||+|+.+.++.....+.+.+.+++++...++    ...    .-.+++..|.|++..+..      + .+.
T Consensus        81 ~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~----~l~----~~~e~e~~~~E~~~~~d~------~-~e~  145 (390)
T KOG2785|consen   81 PKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPS----NLQ----NKGESELKWYEVDSDEDS------S-EEE  145 (390)
T ss_pred             hhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCcc----ccc----cCCCcccchhhccccccc------c-hhh
Confidence            9999999999999998777554333333344444432211    000    011245566555543100      0 000


Q ss_pred             CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccc
Q 020332          159 NVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY  238 (327)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~  238 (327)
                      ...  +..+|+ +++.....+..|..||||++.+++++.++.||..+||||||+.+||+|+.|||.||++||+.++.||+
T Consensus       146 ~~d--d~~Edi-~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~  222 (390)
T KOG2785|consen  146 EED--DEEEDI-EEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF  222 (390)
T ss_pred             ccC--cchhhh-hhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE
Confidence            000  111111 11111223456699999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCHHHHHHHHHhcCCcccCCCCCChhHHHhhhhhccccCCCC--CCcceeeccCCCh
Q 020332          239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSRSL--SSKFIFLFCFLFP  301 (327)
Q Consensus       239 C~~~gk~F~s~~~l~~HM~~k~Hcki~~~~~~~e~~~e~~~fYd~~~sy~--~~~~~~~~~~~~~  301 (327)
                      ||..|+.|+|++++|+||++|+||+|+| ++  |+++||++|||||+||+  ++++.+..+++.+
T Consensus       223 CN~~~~~f~sleavr~HM~~K~HCkl~y-d~--ee~~El~efYDfsssY~d~~~~~~~~~~e~~~  284 (390)
T KOG2785|consen  223 CNELGRPFSSLEAVRAHMRDKGHCKLPY-DG--EERLELAEFYDFSSSYPDIAENQDPDSAEEDP  284 (390)
T ss_pred             eccccCcccccHHHHHHHhhccCcccCC-Ch--HHHhhhhhhhcCcccccCcccCCCCcchhcCC
Confidence            9999999999999999999999999999 54  88999999999999998  5666666555555

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=99.73  E-value=1.4e-18  Score=137.57  Aligned_cols=99  Identities=44%  Similarity=0.797  Sum_probs=27.9

Q ss_pred             CCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhcCCcc
Q 020332          184 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  263 (327)
Q Consensus       184 ~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k~Hck  263 (327)
                      +|++|+..|+++..++.||...|++.+|....+++..+++.|+..++...+.|.+|+   +.|.+..+|+.||+.++|.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~---~~f~s~~~l~~Hm~~~~H~~   77 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCN---KTFRSREALQEHMRSKHHKK   77 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS----EESSHHHHHHHHHHTTTTC
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccC---CCCcCHHHHHHHHcCccCCC
Confidence            599999999999999999999999999999999999999999999988779999997   99999999999999999999


Q ss_pred             cCCCCCChhHHHhhhhhccc-cCCC
Q 020332          264 IHFGDGDDEEEAELEEFYDY-SSRS  287 (327)
Q Consensus       264 i~~~~~~~e~~~e~~~fYd~-~~sy  287 (327)
                      +.++.+  ....++..||+| +.+|
T Consensus        78 ~~~~~~--~~~~~~~~~y~~~~~~~  100 (100)
T PF12756_consen   78 RNSESE--ESWEEFEKFYDFWSNDY  100 (100)
T ss_dssp             -S-----------------------
T ss_pred             cccccc--cccccccccccccccCC
Confidence            988653  567899999999 6665

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=99.63  E-value=2e-16  Score=148.93  Aligned_cols=207  Identities=22%  Similarity=0.346  Sum_probs=143.4

Q ss_pred             ccccccccccC-ChHHHhccccccccccchhhhhcCCC--CccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChH
Q 020332            4 LTCNSCNREFN-DDAEQKLHYKSDWHRYNLKRKVAGVP--GVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSK   80 (327)
Q Consensus         4 f~C~~C~~~F~-~~~~lr~H~ksdwHryNlKRkva~lp--pv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~   80 (327)
                      ..|..|+..+. +++....|+-.. |..|+     |+|  .|.+.+|...+..         .-..+.|..|.|.|+.++
T Consensus       145 lqClFCn~e~lgnRs~~l~Hlf~~-H~lni-----GlpDniVyvnelLehLke---------kL~r~~CLyCekifrdkn  209 (423)
T KOG2482|consen  145 LQCLFCNNEGLGNRSEILEHLFHV-HGLNI-----GLPDNIVYVNELLEHLKE---------KLERLRCLYCEKIFRDKN  209 (423)
T ss_pred             eEEEEecchhcccHHHHHHHHHHH-hhhcc-----CCCcceeeHHHHHHHHHH---------HHhhheeeeeccccCCcH
Confidence            46999999987 788899997754 77887     877  6666666654321         113678999999999999


Q ss_pred             HHHHHHhhhhhhhh-hccCC-ChhhhhhhhccCC---CCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccc
Q 020332           81 ALAQHLNSRSHIMR-ASQGT-SNEEKEKVIIKPI---PLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSL  155 (327)
Q Consensus        81 ~l~~Hl~skkHk~~-~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~  155 (327)
                      +|+.|||.|.|++. +++.. ++.    .++..+   .++....+.-..+. .++..+.+++|.+|.+++.         
T Consensus       210 tLkeHMrkK~HrrinPknreYDkf----yiINY~ev~ks~t~~~~e~dret-~~d~~E~D~~wsDw~ed~a---------  275 (423)
T KOG2482|consen  210 TLKEHMRKKRHRRINPKNREYDKF----YIINYLEVGKSWTIVHSEDDRET-NEDINETDDTWSDWNEDDA---------  275 (423)
T ss_pred             HHHHHHHhccCcccCCCccccceE----EEEeHhhcCCccchhhhhhhhhh-hccccccccchhhhhcCCC---------
Confidence            99999999999884 33332 111    122111   01100000000011 1233445566766543220         


Q ss_pred             cccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCc--c---cccChHHHHHHhhhhc
Q 020332          156 TNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV--E---YLKDPKGLLTYLGLKV  230 (327)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~--~---~l~d~~gLl~yl~~ki  230 (327)
                                             +-....|+||.....++..|.+||...|.|.+-..  +   .+++...+++|++.+.
T Consensus       276 -----------------------~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~  332 (423)
T KOG2482|consen  276 -----------------------EALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQK  332 (423)
T ss_pred             -----------------------CccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHh
Confidence                                   01126899999999999999999999999988555  2   3578899999999887


Q ss_pred             cCCccccccCCCCcccCCHHHHHHHHHhcCCcccCC
Q 020332          231 KRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHF  266 (327)
Q Consensus       231 ~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k~Hcki~~  266 (327)
                      .. -.|-.|.   -.|.+..+|+.||....|-.|-.
T Consensus       333 ~~-~~c~~cd---~~F~~e~~l~~hm~e~k~l~i~p  364 (423)
T KOG2482|consen  333 KK-SRCAECD---LSFWKEPGLLIHMVEDKHLSILP  364 (423)
T ss_pred             hc-ccccccc---ccccCcchhhhhccccccccccC
Confidence            64 5899997   79999999999999988877764

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.46  E-value=2e-14  Score=132.76  Aligned_cols=137  Identities=21%  Similarity=0.453  Sum_probs=103.4

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      ..|.|..||+.+.+...|-+|.++  ||--.-++.... ++.-.+|+.. -+|+-|.++|+  -++.|.+|||.|.....
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~--H~~~~s~ka~~C-~~C~K~YvSm-pALkMHirTH~--l~c~C~iCGKaFSRPWL  202 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQT--HRSLDSKKAFSC-KYCGKVYVSM-PALKMHIRTHT--LPCECGICGKAFSRPWL  202 (279)
T ss_pred             Cceeccccccccccccccchhhcc--cccccccccccC-CCCCceeeeh-HHHhhHhhccC--CCcccccccccccchHH
Confidence            358999999999999999999999  753322222221 2222244443 46777777765  47788888888888888


Q ss_pred             HHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccccccCCC
Q 020332           82 LAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVG  161 (327)
Q Consensus        82 l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~  161 (327)
                      |+.|+|++..                                                                      
T Consensus       203 LQGHiRTHTG----------------------------------------------------------------------  212 (279)
T KOG2462|consen  203 LQGHIRTHTG----------------------------------------------------------------------  212 (279)
T ss_pred             hhcccccccC----------------------------------------------------------------------
Confidence            8888875221                                                                      


Q ss_pred             CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCC
Q 020332          162 SPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCND  241 (327)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~  241 (327)
                                        .+|+.|..|++.|.+.++|..||.+|-+                    .|   .|+|..|+ 
T Consensus       213 ------------------EKPF~C~hC~kAFADRSNLRAHmQTHS~--------------------~K---~~qC~~C~-  250 (279)
T KOG2462|consen  213 ------------------EKPFSCPHCGKAFADRSNLRAHMQTHSD--------------------VK---KHQCPRCG-  250 (279)
T ss_pred             ------------------CCCccCCcccchhcchHHHHHHHHhhcC--------------------Cc---cccCcchh-
Confidence                              2589999999999999999999998543                    33   69999996 


Q ss_pred             CCcccCCHHHHHHHHHh
Q 020332          242 RCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       242 ~gk~F~s~~~l~~HM~~  258 (327)
                        |+|.-.+.|.+|...
T Consensus       251 --KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  251 --KSFALKSYLNKHSES  265 (279)
T ss_pred             --hHHHHHHHHHHhhhh
Confidence              999999999999875

>PTZ00448 hypothetical protein; Provisional

Probab=99.46  E-value=2.1e-14  Score=137.64  Aligned_cols=50  Identities=36%  Similarity=0.663  Sum_probs=47.9

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQA   52 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~   52 (327)
                      .|+|++|+..|.+...+|.||||||||||||||++|||||+.++|..++.
T Consensus       314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gLppvse~eF~~~i~  363 (373)
T PTZ00448        314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEFLELQQ  363 (373)
T ss_pred             CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999998864

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=99.27  E-value=2.5e-12  Score=121.46  Aligned_cols=93  Identities=26%  Similarity=0.477  Sum_probs=86.0

Q ss_pred             CCCCCCCCCCCC-CChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          181 DPACCFMCDLPH-DAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       181 ~p~~ClfC~~~f-~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      -..+|+||+..+ ...+..+.||...||+.|.-++.+|....||.+|.+++. .++|+||.   |.|..+..|+.|||.|
T Consensus       143 fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~-r~~CLyCe---kifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  143 FSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLE-RLRCLYCE---KIFRDKNTLKEHMRKK  218 (423)
T ss_pred             eeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHh-hheeeeec---cccCCcHHHHHHHHhc
Confidence            456899999988 688999999999999999999999999999999999987 47999997   9999999999999999


Q ss_pred             CCcccCCCCCChhHHHhhhhhccc
Q 020332          260 RHCKIHFGDGDDEEEAELEEFYDY  283 (327)
Q Consensus       260 ~Hcki~~~~~~~e~~~e~~~fYd~  283 (327)
                      +|.+|+...      .||++||-.
T Consensus       219 ~HrrinPkn------reYDkfyiI  236 (423)
T KOG2482|consen  219 RHRRINPKN------REYDKFYII  236 (423)
T ss_pred             cCcccCCCc------cccceEEEE
Confidence            999999865      699999976

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.24  E-value=2.3e-12  Score=119.17  Aligned_cols=80  Identities=20%  Similarity=0.448  Sum_probs=66.2

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      ..|.|.+|++.|.+...|+.|+||  |..-.++-++|.      .|-+- =.|+.|.++||||+||.|..|+|.|..++.
T Consensus       160 ka~~C~~C~K~YvSmpALkMHirT--H~l~c~C~iCGK------aFSRP-WLLQGHiRTHTGEKPF~C~hC~kAFADRSN  230 (279)
T KOG2462|consen  160 KAFSCKYCGKVYVSMPALKMHIRT--HTLPCECGICGK------AFSRP-WLLQGHIRTHTGEKPFSCPHCGKAFADRSN  230 (279)
T ss_pred             ccccCCCCCceeeehHHHhhHhhc--cCCCcccccccc------cccch-HHhhcccccccCCCCccCCcccchhcchHH
Confidence            468999999999999999999999  755555555553      34432 257889999999999999999999999999


Q ss_pred             HHHHHhhhh
Q 020332           82 LAQHLNSRS   90 (327)
Q Consensus        82 l~~Hl~skk   90 (327)
                      |+.||+++.
T Consensus       231 LRAHmQTHS  239 (279)
T KOG2462|consen  231 LRAHMQTHS  239 (279)
T ss_pred             HHHHHHhhc
Confidence            999998643

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.13  E-value=3.2e-11  Score=124.78  Aligned_cols=55  Identities=22%  Similarity=0.490  Sum_probs=48.1

Q ss_pred             CCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHh
Q 020332          179 EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       179 ~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      .-+|.+|.+|-+..+-.+.|.-|.++|.|                    ++   +|+|..|+   +.|.++.+|+.||..
T Consensus       602 ~TdPNqCiiC~rVlSC~saLqmHyrtHtG--------------------ER---PFkCKiCg---RAFtTkGNLkaH~~v  655 (958)
T KOG1074|consen  602 RTDPNQCIICLRVLSCPSALQMHYRTHTG--------------------ER---PFKCKICG---RAFTTKGNLKAHMSV  655 (958)
T ss_pred             cCCccceeeeeecccchhhhhhhhhcccC--------------------cC---cccccccc---chhccccchhhcccc
Confidence            34789999999999999999999998655                    54   89999996   999999999999976


Q ss_pred             c
Q 020332          259 K  259 (327)
Q Consensus       259 k  259 (327)
                      +
T Consensus       656 H  656 (958)
T KOG1074|consen  656 H  656 (958)
T ss_pred             c
Confidence            4

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.00  E-value=2.7e-10  Score=108.41  Aligned_cols=172  Identities=17%  Similarity=0.249  Sum_probs=113.2

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHH---HHHHHHhhhcCCCCeeecCCcCCcccCh
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQ---AALAQEKNKNATPMTYSCGLCGKGYRSS   79 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~---~~l~~~~~~h~~~~~~~C~~C~K~F~s~   79 (327)
                      ...|..||.-|.+...|-.|.+...        .....|+-|.....+.   ..|..|...|.  ..|+|+.|..+..+.
T Consensus       207 vvACp~Cg~~F~~~tkl~DH~rRqt--------~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~  276 (467)
T KOG3608|consen  207 VVACPHCGELFRTKTKLFDHLRRQT--------ELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSA  276 (467)
T ss_pred             EEecchHHHHhccccHHHHHHHhhh--------hhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCCh
Confidence            3579999999999999999877521        2233467666433332   35677776653  478999999999999


Q ss_pred             HHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccccccC
Q 020332           80 KALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLN  159 (327)
Q Consensus        80 ~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~~~  159 (327)
                      +.|.+||+-+.-+.++-+-.   ..+.                                .-+.+.++.-+-  +-.    
T Consensus       277 ssL~~H~r~rHs~dkpfKCd---~Cd~--------------------------------~c~~esdL~kH~--~~H----  315 (467)
T KOG3608|consen  277 SSLTTHIRYRHSKDKPFKCD---ECDT--------------------------------RCVRESDLAKHV--QVH----  315 (467)
T ss_pred             HHHHHHHHhhhccCCCcccc---chhh--------------------------------hhccHHHHHHHH--Hhc----
Confidence            99999998765443111000   0000                                000001111000  000    


Q ss_pred             CCCCCCCCCccCCCCCCCCCCCCCCCCC--CCCCCCChhhhhhhhhhcc-cCCCCCcccccChHHHHHHhhhhccCCccc
Q 020332          160 VGSPADDDLEEDDDDGAFEEFDPACCFM--CDLPHDAIENCMVHMHKCH-GFFIPDVEYLKDPKGLLTYLGLKVKRDFMC  236 (327)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~~Clf--C~~~f~s~~~l~~HM~~~H-~f~ip~~~~l~d~~gLl~yl~~ki~~~~~C  236 (327)
                                         .-..|.|.+  |...+.+...+..||..+| |+.                     -.+|.|
T Consensus       316 -------------------S~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~n---------------------p~~Y~C  355 (467)
T KOG3608|consen  316 -------------------SKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNN---------------------PILYAC  355 (467)
T ss_pred             -------------------cccceecCCCCCcHHHHHHHHHHHHHHHhccCCC---------------------CCceee
Confidence                               013578888  9999999999999999888 532                     126899


Q ss_pred             cccCCCCcccCCHHHHHHHHHhcCCcccCCCC
Q 020332          237 LYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGD  268 (327)
Q Consensus       237 l~C~~~gk~F~s~~~l~~HM~~k~Hcki~~~~  268 (327)
                      -.|+   |.|.+-.+|-.|++.|.-.+|||+-
T Consensus       356 H~Cd---r~ft~G~~L~~HL~kkH~f~~PsGh  384 (467)
T KOG3608|consen  356 HCCD---RFFTSGKSLSAHLMKKHGFRLPSGH  384 (467)
T ss_pred             ecch---hhhccchhHHHHHHHhhcccCCCCC
Confidence            9998   9999999999999988778888864

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.79  E-value=1.4e-09  Score=96.80  Aligned_cols=81  Identities=23%  Similarity=0.441  Sum_probs=65.5

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      .|+|..|++.|.-...|..|++-  | -.+||-++...   -.-|+... .|+.|.++|++-+||+|..|+|.|..+-.|
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kc--h-~~vkr~lct~c---gkgfndtf-dlkrh~rthtgvrpykc~~c~kaftqrcsl  189 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKC--H-SDVKRHLCTFC---GKGFNDTF-DLKRHTRTHTGVRPYKCSLCEKAFTQRCSL  189 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhh--c-cHHHHHHHhhc---cCcccchh-hhhhhhccccCccccchhhhhHHHHhhccH
Confidence            58999999999999999999998  5 35666544321   12455553 478999999999999999999999999999


Q ss_pred             HHHHhhhh
Q 020332           83 AQHLNSRS   90 (327)
Q Consensus        83 ~~Hl~skk   90 (327)
                      ..|++.-.
T Consensus       190 eshl~kvh  197 (267)
T KOG3576|consen  190 ESHLKKVH  197 (267)
T ss_pred             HHHHHHHc
Confidence            99997543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=98.74  E-value=6.8e-09  Score=107.84  Aligned_cols=54  Identities=24%  Similarity=0.577  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhcCCc
Q 020332          183 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHC  262 (327)
Q Consensus       183 ~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k~Hc  262 (327)
                      ..|-.|++.|++..+|..||++|-|                    +|   +|.|-.|+   +.|..+..|+.||..  |.
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg--------------------~K---PF~C~fC~---~aFttrgnLKvHMgt--H~  931 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTG--------------------PK---PFFCHFCE---EAFTTRGNLKVHMGT--HM  931 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCC--------------------CC---Cccchhhh---hhhhhhhhhhhhhcc--cc
Confidence            5699999999999999999998554                    45   79999996   999999999999993  55


Q ss_pred             cc
Q 020332          263 KI  264 (327)
Q Consensus       263 ki  264 (327)
                      +.
T Consensus       932 w~  933 (958)
T KOG1074|consen  932 WV  933 (958)
T ss_pred             cc
Confidence            44

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.59  E-value=1.5e-08  Score=100.32  Aligned_cols=49  Identities=43%  Similarity=0.770  Sum_probs=45.8

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQ   51 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~   51 (327)
                      ...|.+|+..|.+...|+.||++||||+|+||++.|+|+++.+.|....
T Consensus        66 ~~~CstCq~~F~s~~eqr~HyksD~HR~N~Krkl~~~~ils~edFe~i~  114 (591)
T KOG2505|consen   66 SDQCSTCQIPFGSRQEQREHYKSDWHRFNTKRKLRGKPILSEEDFEGII  114 (591)
T ss_pred             cccccccCCccccHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHhh
Confidence            3579999999999999999999999999999999999999999998653

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.55  E-value=7.7e-08  Score=91.93  Aligned_cols=75  Identities=16%  Similarity=0.247  Sum_probs=60.4

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCc-----ccccChHHHHHHhhhhccCCccccc--cCCCCcccCCHHHHHH
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDV-----EYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRK  254 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~-----~~l~d~~gLl~yl~~ki~~~~~Cl~--C~~~gk~F~s~~~l~~  254 (327)
                      -++|+.|+.+.+..++|..||+..|+-..|..     ..++....|-+|+...-..-|.|..  |.   .+|.+...++.
T Consensus       263 ~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~---~s~r~~~q~~~  339 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCH---YSVRTYTQMRR  339 (467)
T ss_pred             cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCc---HHHHHHHHHHH
Confidence            46899999999999999999998898777666     2357888888887544344689987  97   78899999999


Q ss_pred             HHHhc
Q 020332          255 HMEAK  259 (327)
Q Consensus       255 HM~~k  259 (327)
                      ||+..
T Consensus       340 H~~ev  344 (467)
T KOG3608|consen  340 HFLEV  344 (467)
T ss_pred             HHHHh
Confidence            99964

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.41  E-value=6.3e-08  Score=99.46  Aligned_cols=55  Identities=22%  Similarity=0.395  Sum_probs=48.4

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      +.-++|..||+.|.-.-.|.+|.++|-|                    +|   +|.|..|.   |.|+...+.-.||..|
T Consensus       279 lRKFKCtECgKAFKfKHHLKEHlRIHSG--------------------EK---PfeCpnCk---KRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  279 LRKFKCTECGKAFKFKHHLKEHLRIHSG--------------------EK---PFECPNCK---KRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             hccccccccchhhhhHHHHHhhheeecC--------------------CC---CcCCcccc---cccccCCccccccccc
Confidence            3568999999999999999999998554                    66   89999996   9999999999999987


Q ss_pred             C
Q 020332          260 R  260 (327)
Q Consensus       260 ~  260 (327)
                      .
T Consensus       333 K  333 (1007)
T KOG3623|consen  333 K  333 (1007)
T ss_pred             c
Confidence            3

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.36  E-value=1.3e-07  Score=84.36  Aligned_cols=28  Identities=29%  Similarity=0.725  Sum_probs=23.8

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhhh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      ...|.|.+|+|.|.-+..|.+||+-+..
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~  142 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSD  142 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccH
Confidence            4579999999999999999999976443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.36  E-value=2.1e-07  Score=73.24  Aligned_cols=78  Identities=24%  Similarity=0.516  Sum_probs=26.2

Q ss_pred             cccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHHHH
Q 020332            5 TCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQ   84 (327)
Q Consensus         5 ~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l~~   84 (327)
                      .|..|+..|.+...+..||+.. |..++...         ..+... ..+....+. .....+.|.+|++.|.+..+|..
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~-H~~~~~~~---------~~l~~~-~~~~~~~~~-~~~~~~~C~~C~~~f~s~~~l~~   68 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKK-HGFDIPDQ---------KYLVDP-NRLLNYLRK-KVKESFRCPYCNKTFRSREALQE   68 (100)
T ss_dssp             ------------------------------------------------------------SSEEBSSSS-EESSHHHHHH
T ss_pred             Cccccccccccccccccccccc-cccccccc---------cccccc-ccccccccc-ccCCCCCCCccCCCCcCHHHHHH
Confidence            4999999999999999999876 76554210         011111 111111111 12236999999999999999999


Q ss_pred             HHhhhhhhhh
Q 020332           85 HLNSRSHIMR   94 (327)
Q Consensus        85 Hl~skkHk~~   94 (327)
                      ||+++.|..+
T Consensus        69 Hm~~~~H~~~   78 (100)
T PF12756_consen   69 HMRSKHHKKR   78 (100)
T ss_dssp             HHHHTTTTC-
T ss_pred             HHcCccCCCc
Confidence            9999999873

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.34  E-value=1.4e-07  Score=96.86  Aligned_cols=74  Identities=22%  Similarity=0.448  Sum_probs=64.4

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHH----HHHHHHHHHHHHhhhcCCCCeeecCCcCCcccC
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEA----LFLARQAALAQEKNKNATPMTYSCGLCGKGYRS   78 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~----~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s   78 (327)
                      .|.|+.|.+.|...+.|-+|---  |        .|..|.-|.    .|..| --|.+|++.|.|++||.|+-|+|+|..
T Consensus       894 myaCDqCDK~FqKqSSLaRHKYE--H--------sGqRPyqC~iCkKAFKHK-HHLtEHkRLHSGEKPfQCdKClKRFSH  962 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKYE--H--------SGQRPYQCIICKKAFKHK-HHLTEHKRLHSGEKPFQCDKCLKRFSH  962 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhhh--h--------cCCCCcccchhhHhhhhh-hhhhhhhhhccCCCcchhhhhhhhccc
Confidence            59999999999999999888555  5        488888777    46555 368899999999999999999999999


Q ss_pred             hHHHHHHHh
Q 020332           79 SKALAQHLN   87 (327)
Q Consensus        79 ~~~l~~Hl~   87 (327)
                      .+.|.+||+
T Consensus       963 SGSYSQHMN  971 (1007)
T KOG3623|consen  963 SGSYSQHMN  971 (1007)
T ss_pred             ccchHhhhc
Confidence            999999995

>PHA00733 hypothetical protein

Probab=98.11  E-value=2.5e-06  Score=71.86  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCCChhhhhhhhhhccc
Q 020332          183 ACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       183 ~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      +.|..|++.|.....|..|+.+.|+
T Consensus       100 ~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        100 KVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             ccCCCCCCccCCHHHHHHHHHHhcC
Confidence            5799999999999999999999997

>PHA02768 hypothetical protein; Provisional

Probab=98.06  E-value=1.1e-06  Score=62.89  Aligned_cols=43  Identities=14%  Similarity=0.300  Sum_probs=37.0

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      +|.|..||+.|...+.|+.||++  |.                                   ++|+|..|+|.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~-----------------------------------k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK--HN-----------------------------------TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh--cC-----------------------------------CcccCCcccceeccccee
Confidence            68999999999999999999999  41                                   377899999999866554

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.91  E-value=3.2e-06  Score=51.82  Aligned_cols=27  Identities=33%  Similarity=0.705  Sum_probs=25.0

Q ss_pred             eeecCCcCCcccChHHHHHHHhhhhhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNSRSHI   92 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~skkHk   92 (327)
                      .|.|.+|++.|.+..++.+|+++++|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            378999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.86  E-value=9e-06  Score=48.62  Aligned_cols=25  Identities=40%  Similarity=0.929  Sum_probs=24.0

Q ss_pred             eecCCcCCcccChHHHHHHHhhhhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      |.|.+|++.|.+..+|+.|+++++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999987

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.80  E-value=1.3e-05  Score=48.74  Aligned_cols=25  Identities=24%  Similarity=0.647  Sum_probs=22.5

Q ss_pred             HHHHhhhcCCCCeeecCCcCCcccC
Q 020332           54 LAQEKNKNATPMTYSCGLCGKGYRS   78 (327)
Q Consensus        54 l~~~~~~h~~~~~~~C~~C~K~F~s   78 (327)
                      |..|+++|+++++|.|+.|+|+|.+
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            6778889999999999999999974

...

>PHA00733 hypothetical protein

Probab=97.78  E-value=2.1e-05  Score=66.33  Aligned_cols=80  Identities=14%  Similarity=0.170  Sum_probs=54.3

Q ss_pred             CCccccccccccCChHHHhcc--ccccccccchhhhhcCCCCccHH----HHHHHHHHHHHHhhhcCCCCeeecCCcCCc
Q 020332            2 PGLTCNSCNREFNDDAEQKLH--YKSDWHRYNLKRKVAGVPGVTEA----LFLARQAALAQEKNKNATPMTYSCGLCGKG   75 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H--~ksdwHryNlKRkva~lppv~~~----~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~   75 (327)
                      .++.|..|...|.++..|+.|  ++.  |.     ...+..|+.|+    .|..+ ..|.+|++.|  ..+|.|.+|+|.
T Consensus        39 ~~~~~~~~~~~~~~~~~l~~~~~l~~--~~-----~~~~~kPy~C~~Cgk~Fss~-s~L~~H~r~h--~~~~~C~~CgK~  108 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQLLDESSYLYK--LL-----TSKAVSPYVCPLCLMPFSSS-VSLKQHIRYT--EHSKVCPVCGKE  108 (128)
T ss_pred             hhHHHHHHhhhccChhhhcchHHHHh--hc-----ccCCCCCccCCCCCCcCCCH-HHHHHHHhcC--CcCccCCCCCCc
Confidence            357799999999988888877  222  10     11123444444    24433 4567777754  346899999999


Q ss_pred             ccChHHHHHHHhhhhh
Q 020332           76 YRSSKALAQHLNSRSH   91 (327)
Q Consensus        76 F~s~~~l~~Hl~skkH   91 (327)
                      |.....|..|+..+..
T Consensus       109 F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        109 FRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCCHHHHHHHHHHhcC
Confidence            9999999999887543

>PHA00732 hypothetical protein

Probab=97.73  E-value=1.7e-05  Score=61.38  Aligned_cols=49  Identities=29%  Similarity=0.480  Sum_probs=39.9

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      ||.|..|++.|.+...|+.|++.. |                                    .++.|+.|+++|.   .+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~-H------------------------------------~~~~C~~CgKsF~---~l   40 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRN-H------------------------------------TLTKCPVCNKSYR---RL   40 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcc-c------------------------------------CCCccCCCCCEeC---Ch
Confidence            689999999999999999999852 3                                    1347999999998   47


Q ss_pred             HHHHhhhhh
Q 020332           83 AQHLNSRSH   91 (327)
Q Consensus        83 ~~Hl~skkH   91 (327)
                      ..|+++|..
T Consensus        41 ~~H~~~~~~   49 (79)
T PHA00732         41 NQHFYSQYD   49 (79)
T ss_pred             hhhhcccCC
Confidence            788876654

>PHA02768 hypothetical protein; Provisional

Probab=97.62  E-value=2.5e-05  Score=55.99  Aligned_cols=44  Identities=11%  Similarity=0.091  Sum_probs=36.8

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHH
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAV  252 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l  252 (327)
                      -.+.|..||+.|+..+.|..||++|+                         .+++|..|+   |.|...+.|
T Consensus         4 ~~y~C~~CGK~Fs~~~~L~~H~r~H~-------------------------k~~kc~~C~---k~f~~~s~l   47 (55)
T PHA02768          4 LGYECPICGEIYIKRKSMITHLRKHN-------------------------TNLKLSNCK---RISLRTGEY   47 (55)
T ss_pred             cccCcchhCCeeccHHHHHHHHHhcC-------------------------CcccCCccc---ceeccccee
Confidence            35789999999999999999999854                         168999996   888866554

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.56  E-value=0.00015  Score=71.27  Aligned_cols=87  Identities=26%  Similarity=0.482  Sum_probs=57.1

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHH-hhh--cCCCCeeecCCcCCcccCh
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQE-KNK--NATPMTYSCGLCGKGYRSS   79 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~-~~~--h~~~~~~~C~~C~K~F~s~   79 (327)
                      .|.|..|++.|+-+..|-.|.|  ||.-.=---.++-+|-... -..+  .+.++ .+.  ......|.|.+|+|+|+++
T Consensus       295 EYrCPEC~KVFsCPANLASHRR--WHKPR~eaa~a~~~P~k~~-~~~r--ae~~ea~rsg~dss~gi~~C~~C~KkFrRq  369 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRR--WHKPRPEAAKAGSPPPKQA-VETR--AEVQEAERSGDDSSSGIFSCHTCGKKFRRQ  369 (500)
T ss_pred             eecCCcccccccCchhhhhhhc--ccCCchhhhhcCCCChhhh-hhhh--hhhhhccccCCcccCceeecHHhhhhhHHH
Confidence            4899999999999999999987  7864322222355553221 1111  12222 111  1233479999999999999


Q ss_pred             HHHHHHHhhhhhhhh
Q 020332           80 KALAQHLNSRSHIMR   94 (327)
Q Consensus        80 ~~l~~Hl~skkHk~~   94 (327)
                      .-|+.|+.++.-...
T Consensus       370 AYLrKHqlthq~~~~  384 (500)
T KOG3993|consen  370 AYLRKHQLTHQRAPL  384 (500)
T ss_pred             HHHHHhHHhhhcccc
Confidence            999999877655443

>PHA00732 hypothetical protein

Probab=97.52  E-value=7.3e-05  Score=57.81  Aligned_cols=47  Identities=17%  Similarity=0.373  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      |+.|..|++.|.+...|..||+.+|.                         ++.|..|+   +.|.   .+..|++.|
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~-------------------------~~~C~~Cg---KsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT-------------------------LTKCPVCN---KSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC-------------------------CCccCCCC---CEeC---Chhhhhccc
Confidence            57899999999999999999986553                         35899997   8888   467898665

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.48  E-value=8.6e-05  Score=47.78  Aligned_cols=30  Identities=20%  Similarity=0.542  Sum_probs=27.7

Q ss_pred             eeecCCcCCcccChHHHHHHHhhhhhhhhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNSRSHIMRA   95 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~   95 (327)
                      +|.|++|++.|.+..++.+|+++++|+.+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~   32 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNV   32 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHH
Confidence            688999999999999999999999998854

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.38  E-value=0.0002  Score=73.77  Aligned_cols=50  Identities=20%  Similarity=0.264  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCCCC----------ChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHH
Q 020332          181 DPACCFMCDLPHD----------AIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLE  250 (327)
Q Consensus       181 ~p~~ClfC~~~f~----------s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~  250 (327)
                      .|+.|.||+..+.          ..+.+..|+.. +|                    .   ..+.|..||   +.|. +.
T Consensus       503 Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG--------------------~---rt~~C~~Cg---k~Vr-lr  554 (567)
T PLN03086        503 RLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CG--------------------S---RTAPCDSCG---RSVM-LK  554 (567)
T ss_pred             CceeCCCCCCccccCccccchhhhhhhHHHHHHh-cC--------------------C---cceEccccC---Ceee-eh
Confidence            4678999999884          13466677664 34                    2   367999996   6554 45


Q ss_pred             HHHHHHHh
Q 020332          251 AVRKHMEA  258 (327)
Q Consensus       251 ~l~~HM~~  258 (327)
                      .+..|+..
T Consensus       555 dm~~H~~~  562 (567)
T PLN03086        555 EMDIHQIA  562 (567)
T ss_pred             hHHHHHHH
Confidence            57788775

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.24  E-value=8.2e-05  Score=47.90  Aligned_cols=34  Identities=32%  Similarity=0.642  Sum_probs=30.8

Q ss_pred             CCCccccccccccCChHHHhccccccccccchhh
Q 020332            1 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKR   34 (327)
Q Consensus         1 ~~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKR   34 (327)
                      +.+|.|..|++.|.+...++.|+++..|+.|+++
T Consensus         1 ~~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CcCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            4689999999999999999999999999887765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.20  E-value=0.00024  Score=41.43  Aligned_cols=22  Identities=36%  Similarity=0.958  Sum_probs=20.9

Q ss_pred             eecCCcCCcccChHHHHHHHhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      |.|+.|++.|.+...|.+|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            7899999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.96  E-value=0.00033  Score=42.74  Aligned_cols=25  Identities=32%  Similarity=0.737  Sum_probs=23.7

Q ss_pred             ccccccccccCChHHHhcccccccc
Q 020332            4 LTCNSCNREFNDDAEQKLHYKSDWH   28 (327)
Q Consensus         4 f~C~~C~~~F~~~~~lr~H~ksdwH   28 (327)
                      |.|..|++.|.+...++.|+++..|
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~H   26 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKH   26 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCC
Confidence            7899999999999999999999766

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PHA00616 hypothetical protein

Probab=96.93  E-value=0.00026  Score=48.51  Aligned_cols=27  Identities=15%  Similarity=0.230  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccC
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGF  208 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f  208 (327)
                      |++|+.||+.|...+.+..|+++|||-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC
Confidence            689999999999999999999999984

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.80  E-value=0.001  Score=38.42  Aligned_cols=23  Identities=39%  Similarity=1.002  Sum_probs=19.2

Q ss_pred             eecCCcCCcccChHHHHHHHhhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |.|++|++.|.+...|..|++..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999999864

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.68  E-value=0.0011  Score=40.16  Aligned_cols=24  Identities=38%  Similarity=0.750  Sum_probs=22.0

Q ss_pred             eeecCCcCCcccChHHHHHHHhhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +|.|..|++.|.+..+|..|++..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            589999999999999999999764

>PHA00616 hypothetical protein

Probab=96.65  E-value=0.00026  Score=48.47  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=22.7

Q ss_pred             CccccccccccCChHHHhcccccc
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSD   26 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksd   26 (327)
                      ||+|..||+.|.....++.|++++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~   24 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSV   24 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHh
Confidence            699999999999999999999985

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.62  E-value=0.0017  Score=46.31  Aligned_cols=51  Identities=27%  Similarity=0.612  Sum_probs=38.9

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      .|+|+.|++.| +...|..|.... |+.                                ..+.+.|++|...+.  ..|
T Consensus         2 ~f~CP~C~~~~-~~~~L~~H~~~~-H~~--------------------------------~~~~v~CPiC~~~~~--~~l   45 (54)
T PF05605_consen    2 SFTCPYCGKGF-SESSLVEHCEDE-HRS--------------------------------ESKNVVCPICSSRVT--DNL   45 (54)
T ss_pred             CcCCCCCCCcc-CHHHHHHHHHhH-CcC--------------------------------CCCCccCCCchhhhh--hHH
Confidence            59999999954 578899998875 531                                234689999998655  488


Q ss_pred             HHHHhhh
Q 020332           83 AQHLNSR   89 (327)
Q Consensus        83 ~~Hl~sk   89 (327)
                      ..||.+.
T Consensus        46 ~~Hl~~~   52 (54)
T PF05605_consen   46 IRHLNSQ   52 (54)
T ss_pred             HHHHHHh
Confidence            9999764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=96.59  E-value=0.00064  Score=66.85  Aligned_cols=27  Identities=11%  Similarity=0.070  Sum_probs=24.2

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccC
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGF  208 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f  208 (327)
                      .+.|..|++.|....-|.+|...||--
T Consensus       356 i~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence            678999999999999999998888753

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.56  E-value=0.00089  Score=40.54  Aligned_cols=24  Identities=21%  Similarity=0.580  Sum_probs=22.6

Q ss_pred             CccccccccccCChHHHhcccccc
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSD   26 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksd   26 (327)
                      ||.|..|++.|.+...|..|++.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            689999999999999999999984

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.46  E-value=0.00092  Score=38.66  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCCChhhhhhhhhhcc
Q 020332          183 ACCFMCDLPHDAIENCMVHMHKCH  206 (327)
Q Consensus       183 ~~ClfC~~~f~s~~~l~~HM~~~H  206 (327)
                      +.|.+|+..|.+...+..||..+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            469999999999999999999876

...

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.46  E-value=0.00074  Score=40.14  Aligned_cols=24  Identities=25%  Similarity=0.675  Sum_probs=22.0

Q ss_pred             ccccccccccCChHHHhccccccc
Q 020332            4 LTCNSCNREFNDDAEQKLHYKSDW   27 (327)
Q Consensus         4 f~C~~C~~~F~~~~~lr~H~ksdw   27 (327)
                      |.|..|++.|.+...++.|+++..
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~   24 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKK   24 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCC
Confidence            689999999999999999999843

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.31  E-value=0.00086  Score=63.85  Aligned_cols=69  Identities=25%  Similarity=0.506  Sum_probs=50.3

Q ss_pred             CCccccc--cccccCChHHHhccccccccccchhhhhcCC-CCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccC
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKSDWHRYNLKRKVAGV-PGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRS   78 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ksdwHryNlKRkva~l-ppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s   78 (327)
                      .||+|.+  |.+.+.+...|+.|+.-- |. |-|  ...- .|+.-..|..             ..+||+|++|+|+|+.
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhG-H~-~~~--~~~~p~p~~~~~F~~-------------~~KPYrCevC~KRYKN  410 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHG-HQ-NQK--LHENPSPEKMNIFSA-------------KDKPYRCEVCDKRYKN  410 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhcc-cc-Ccc--cCCCCCccccccccc-------------cCCceeccccchhhcc
Confidence            5899975  999999999999999864 31 111  1111 2444445643             3589999999999999


Q ss_pred             hHHHHHHHh
Q 020332           79 SKALAQHLN   87 (327)
Q Consensus        79 ~~~l~~Hl~   87 (327)
                      .+.|+-|..
T Consensus       411 lNGLKYHr~  419 (423)
T COG5189         411 LNGLKYHRK  419 (423)
T ss_pred             Cccceeccc
Confidence            999988863

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.21  E-value=0.0025  Score=37.05  Aligned_cols=22  Identities=27%  Similarity=0.762  Sum_probs=20.3

Q ss_pred             ccccccCCCCcccCCHHHHHHHHHh
Q 020332          234 FMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       234 ~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      |+|..|+   +.|.+...|+.||+.
T Consensus         1 y~C~~C~---~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICG---KSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTT---EEESSHHHHHHHHHH
T ss_pred             CCCCCCC---CccCCHHHHHHHHhH
Confidence            5799997   999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=95.96  E-value=0.0024  Score=52.75  Aligned_cols=84  Identities=24%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             ChHHHhccccccccccchhhhhcC--CCCccHHHHHHHHHHHHHHhhh-cCCCCeeecCCcCCcccChHHHHHHHhhhhh
Q 020332           15 DDAEQKLHYKSDWHRYNLKRKVAG--VPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        15 ~~~~lr~H~ksdwHryNlKRkva~--lppv~~~~F~~k~~~l~~~~~~-h~~~~~~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      ..+.-+.|.+++-||-|.-|.-+.  |..|..+.=..+...|.+.... --|--.|.|..|.+-|.+..+|+.|.++|.|
T Consensus         3 ~~s~r~k~~~~~~hr~~r~r~~~r~dLDqi~~dl~~~~~kll~~~~D~dlPG~GqfyCi~CaRyFi~~~~l~~H~ktK~H   82 (129)
T KOG3408|consen    3 MVSVRRKHHRSNRHRINRTRGRARKDLDQIDEDLETQKGKLLNQEIDPDLPGGGQFYCIECARYFIDAKALKTHFKTKVH   82 (129)
T ss_pred             ccccccccccchhHHHHhhhccCcccccccccccccccchhhcCcCCCCCCCCceeehhhhhhhhcchHHHHHHHhccHH
Confidence            445566788888888776655544  3333332111111111111100 0134579999999999999999999999999


Q ss_pred             hhhhccC
Q 020332           92 IMRASQG   98 (327)
Q Consensus        92 k~~~~~~   98 (327)
                      |.|+++.
T Consensus        83 KrRvK~l   89 (129)
T KOG3408|consen   83 KRRVKEL   89 (129)
T ss_pred             HHHHHhc
Confidence            9986643

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.004  Score=62.15  Aligned_cols=30  Identities=33%  Similarity=0.628  Sum_probs=27.9

Q ss_pred             eecCCcCCcccChHHHHHHHhhhhhhhhhc
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSRSHIMRAS   96 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~   96 (327)
                      +.|.+|+|+|++.+++++|..||+|+.+.+
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~  322 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVA  322 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHH
Confidence            889999999999999999999999998643

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.78  E-value=0.011  Score=65.36  Aligned_cols=82  Identities=22%  Similarity=0.306  Sum_probs=60.1

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      .|.|..|+..|.....|-.|||+.+|-.+..+-.++.+-.          .+++-...-.+-.+|.|..|.-++.+...|
T Consensus       465 t~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~----------~~arg~~~~~~~~p~~C~~C~~stttng~L  534 (1406)
T KOG1146|consen  465 TLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHP----------RLARGEVYRCPGKPYPCRACNYSTTTNGNL  534 (1406)
T ss_pred             cccCCccchhhhhHHHhhhcccccccccchhHhHhccccc----------cccccccccCCCCcccceeeeeeeecchHH
Confidence            5899999999999999999999987766653333332210          011101111245789999999999999999


Q ss_pred             HHHHhhhhhhhh
Q 020332           83 AQHLNSRSHIMR   94 (327)
Q Consensus        83 ~~Hl~skkHk~~   94 (327)
                      ..||.+-+|+.+
T Consensus       535 sihlqS~~h~~~  546 (1406)
T KOG1146|consen  535 SIHLQSDLHRNE  546 (1406)
T ss_pred             HHHHHHHhhHHH
Confidence            999999999874

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=95.77  E-value=0.012  Score=41.95  Aligned_cols=51  Identities=14%  Similarity=0.346  Sum_probs=38.1

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      .+.|+||++ .-+...|..|....|..                   +.  ..+.|..|.   ..+.  ..|..||...
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~-------------------~~--~~v~CPiC~---~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRS-------------------ES--KNVVCPICS---SRVT--DNLIRHLNSQ   52 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcC-------------------CC--CCccCCCch---hhhh--hHHHHHHHHh
Confidence            468999999 56789999998888852                   11  247999996   4333  4899999853

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.43  E-value=0.011  Score=34.35  Aligned_cols=21  Identities=43%  Similarity=0.947  Sum_probs=19.8

Q ss_pred             eecCCcCCcccChHHHHHHHh
Q 020332           67 YSCGLCGKGYRSSKALAQHLN   87 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~   87 (327)
                      |.|..|++.|.+...|..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            579999999999999999998

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=95.43  E-value=0.008  Score=36.38  Aligned_cols=26  Identities=35%  Similarity=0.727  Sum_probs=19.9

Q ss_pred             hhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCC
Q 020332          197 NCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNS  248 (327)
Q Consensus       197 ~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s  248 (327)
                      +|..||++|.|                    ++   +|.|..|+   +.|.+
T Consensus         1 ~l~~H~~~H~~--------------------~k---~~~C~~C~---k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTG--------------------EK---PYKCPYCG---KSFSN   26 (26)
T ss_dssp             HHHHHHHHHSS--------------------SS---SEEESSSS---EEESS
T ss_pred             CHHHHhhhcCC--------------------CC---CCCCCCCc---CeeCc
Confidence            46789987554                    44   89999997   88864

...

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.66  E-value=0.01  Score=34.94  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             CCCCCCCCCCCChhhhhhhhhhccc
Q 020332          183 ACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       183 ~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ++|.+|+.... ...+.+||..+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            47999999998 8899999999885

>PLN03086 PRLI-interacting factor K; Provisional

Probab=93.18  E-value=0.18  Score=52.34  Aligned_cols=73  Identities=14%  Similarity=0.225  Sum_probs=50.0

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhc-cCCccccccCCCCcccC----------CHH
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKV-KRDFMCLYCNDRCHPFN----------SLE  250 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki-~~~~~Cl~C~~~gk~F~----------s~~  250 (327)
                      ...|.+|+..|. ...+..||..+|.-+.+..........|..|+...- ..++.|.+|+   +.|.          ...
T Consensus       453 H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~---~~v~~g~~~~d~~d~~s  528 (567)
T PLN03086        453 HVHCEKCGQAFQ-QGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCG---DMVQAGGSAMDVRDRLR  528 (567)
T ss_pred             CccCCCCCCccc-hHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCC---CccccCccccchhhhhh
Confidence            457999999996 678899999888544443323446677777764221 2478999997   6663          245


Q ss_pred             HHHHHHHh
Q 020332          251 AVRKHMEA  258 (327)
Q Consensus       251 ~l~~HM~~  258 (327)
                      .|..|+..
T Consensus       529 ~Lt~HE~~  536 (567)
T PLN03086        529 GMSEHESI  536 (567)
T ss_pred             hHHHHHHh
Confidence            78888875

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=92.66  E-value=0.097  Score=51.28  Aligned_cols=80  Identities=18%  Similarity=0.393  Sum_probs=53.3

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcC---CcccCh
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCG---KGYRSS   79 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~---K~F~s~   79 (327)
                      |--|..|+..|.+-..-..||..+ |-+=       +|-+   ++..-..-|..=... .....|.|..|+   +.|.+.
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~-Hgff-------IPdr---eYL~D~~GLl~YLge-KV~~~~~CL~CN~~~~~f~sl  233 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKE-HGFF-------IPDR---EYLTDEKGLLKYLGE-KVGIGFICLFCNELGRPFSSL  233 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhc-cCCc-------CCch---HhhhchhHHHHHHHH-HhccCceEEEeccccCccccc
Confidence            457999999999999999999987 5322       2211   111111111000000 022568899998   999999


Q ss_pred             HHHHHHHhhhhhhhh
Q 020332           80 KALAQHLNSRSHIMR   94 (327)
Q Consensus        80 ~~l~~Hl~skkHk~~   94 (327)
                      .+.+.||..|.|-+.
T Consensus       234 eavr~HM~~K~HCkl  248 (390)
T KOG2785|consen  234 EAVRAHMRDKGHCKL  248 (390)
T ss_pred             HHHHHHHhhccCccc
Confidence            999999999999763

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=92.64  E-value=0.23  Score=40.23  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=25.5

Q ss_pred             CCCCCC----CCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACC----FMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~C----lfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .+.+.|    ..|++...+...+..|++.+||
T Consensus        78 ~~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   78 YDGYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            356889    9999999999999999999996

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>smart00355 ZnF_C2H2 zinc finger

Probab=92.36  E-value=0.13  Score=29.61  Aligned_cols=22  Identities=32%  Similarity=0.729  Sum_probs=19.8

Q ss_pred             ccccccCCCCcccCCHHHHHHHHHh
Q 020332          234 FMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       234 ~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      +.|..|+   +.|.+...|+.||+.
T Consensus         1 ~~C~~C~---~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECG---KVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCc---chhCCHHHHHHHHHH
Confidence            5799997   999999999999983

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=92.26  E-value=0.047  Score=45.26  Aligned_cols=36  Identities=33%  Similarity=0.563  Sum_probs=31.7

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCC
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPG   41 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lpp   41 (327)
                      ..|.|..|.+-|.+...|+.|+|+..|    |||+..|.+
T Consensus        56 GqfyCi~CaRyFi~~~~l~~H~ktK~H----KrRvK~l~~   91 (129)
T KOG3408|consen   56 GQFYCIECARYFIDAKALKTHFKTKVH----KRRVKELRE   91 (129)
T ss_pred             ceeehhhhhhhhcchHHHHHHHhccHH----HHHHHhccc
Confidence            458999999999999999999999988    788877753

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.48  E-value=0.19  Score=52.92  Aligned_cols=72  Identities=21%  Similarity=0.357  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCChhhhhhhhhhcccCCCCCc-----c------cccChHHHHHHhh-----hhccCC-ccccccCCCCcc
Q 020332          183 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDV-----E------YLKDPKGLLTYLG-----LKVKRD-FMCLYCNDRCHP  245 (327)
Q Consensus       183 ~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~-----~------~l~d~~gLl~yl~-----~ki~~~-~~Cl~C~~~gk~  245 (327)
                      ..|++| ..|.++..|..||...|.++.+..     +      .++....|+.|+.     ++...+ ..|.+|.   ..
T Consensus       116 ~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~---~~  191 (669)
T KOG2231|consen  116 KECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCH---ER  191 (669)
T ss_pred             CCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhh---hh
Confidence            468888 788899999999988898887554     1      2467778888863     222223 5899997   78


Q ss_pred             cCCHHHHHHHHHh
Q 020332          246 FNSLEAVRKHMEA  258 (327)
Q Consensus       246 F~s~~~l~~HM~~  258 (327)
                      |-....|+.||+-
T Consensus       192 fld~~el~rH~~~  204 (669)
T KOG2231|consen  192 FLDDDELYRHLRF  204 (669)
T ss_pred             hccHHHHHHhhcc
Confidence            8889999999984

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.46  E-value=0.081  Score=37.39  Aligned_cols=28  Identities=25%  Similarity=0.305  Sum_probs=21.2

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|..|+.|+..+.+..+|..||...|+
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            3578999999999999999999999886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.24  E-value=0.28  Score=34.69  Aligned_cols=31  Identities=29%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             CCCCeeecCCcCCcccChHHHHHHHhhhhhh
Q 020332           62 ATPMTYSCGLCGKGYRSSKALAQHLNSRSHI   92 (327)
Q Consensus        62 ~~~~~~~C~~C~K~F~s~~~l~~Hl~skkHk   92 (327)
                      ....+-.|++|+..+.+...|++||.....+
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            3567889999999999999999999876543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=89.30  E-value=0.29  Score=29.34  Aligned_cols=21  Identities=24%  Similarity=0.725  Sum_probs=17.1

Q ss_pred             eecCCcCCcccChHHHHHHHhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      ..|+.||++| ....|..|++.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3699999999 66788899753

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=88.75  E-value=0.42  Score=27.83  Aligned_cols=22  Identities=27%  Similarity=0.610  Sum_probs=17.2

Q ss_pred             eecCCcCCcccChHHHHHHHhhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |.|+.|....+ ...|.+|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            68999998887 88999999764

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.71  E-value=0.18  Score=45.66  Aligned_cols=63  Identities=25%  Similarity=0.546  Sum_probs=47.9

Q ss_pred             cccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeec--CCcCCcccChHHH
Q 020332            5 TCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSC--GLCGKGYRSSKAL   82 (327)
Q Consensus         5 ~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C--~~C~K~F~s~~~l   82 (327)
                      .|..|.+.|++..+|-.|+- +||-               ..|..+++         -|..-|.|  +-|+-.|++..+-
T Consensus       108 sCs~C~r~~Pt~hLLd~HI~-E~HD---------------s~Fqa~ve---------RG~dMy~ClvEgCt~KFkT~r~R  162 (253)
T KOG4173|consen  108 SCSFCKRAFPTGHLLDAHIL-EWHD---------------SLFQALVE---------RGQDMYQCLVEGCTEKFKTSRDR  162 (253)
T ss_pred             hhHHHHHhCCchhhhhHHHH-HHHH---------------HHHHHHHH---------cCccHHHHHHHhhhhhhhhhhhh
Confidence            79999999999999999975 6881               13444432         14557888  6799999999999


Q ss_pred             HHHHhhhhhhh
Q 020332           83 AQHLNSRSHIM   93 (327)
Q Consensus        83 ~~Hl~skkHk~   93 (327)
                      +.||.. +||.
T Consensus       163 kdH~I~-~Hk~  172 (253)
T KOG4173|consen  163 KDHMIR-MHKY  172 (253)
T ss_pred             hhHHHH-hccC
Confidence            999965 5554

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.18  E-value=0.47  Score=46.16  Aligned_cols=73  Identities=19%  Similarity=0.370  Sum_probs=57.0

Q ss_pred             CCCCCCCCCCChhhhhhhhhhcc-cCCCCCc------ccccChHHHHHHhhhhccCCcccc--cc-CCCCcccCCHHHHH
Q 020332          184 CCFMCDLPHDAIENCMVHMHKCH-GFFIPDV------EYLKDPKGLLTYLGLKVKRDFMCL--YC-NDRCHPFNSLEAVR  253 (327)
Q Consensus       184 ~ClfC~~~f~s~~~l~~HM~~~H-~f~ip~~------~~l~d~~gLl~yl~~ki~~~~~Cl--~C-~~~gk~F~s~~~l~  253 (327)
                      .|.||...|=+-.+|..||+..| .-+|++.      +|+.+...|-.|...-   .|.|.  .| ..+..+|...-.|+
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~---hy~ct~qtc~~~k~~vf~~~~el~  298 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNA---HYCCTFQTCRVGKCYVFPYHTELL  298 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcC---ceEEEEEEEecCcEEEeccHHHHH
Confidence            79999999999999999999988 4566555      7899999999887433   46663  35 22236899999999


Q ss_pred             HHHHhc
Q 020332          254 KHMEAK  259 (327)
Q Consensus       254 ~HM~~k  259 (327)
                      .|+..-
T Consensus       299 ~h~~~~  304 (493)
T COG5236         299 EHLTRF  304 (493)
T ss_pred             HHHHHH
Confidence            998753

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=88.18  E-value=0.53  Score=45.85  Aligned_cols=36  Identities=25%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVA   37 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva   37 (327)
                      +.+.|..|++-|.....+..|.....|..|-+++..
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            467899999999999999999999999888766644

>PLN02748 tRNA dimethylallyltransferase

Probab=87.62  E-value=0.29  Score=49.85  Aligned_cols=32  Identities=31%  Similarity=0.598  Sum_probs=28.8

Q ss_pred             CeeecCCcCC-cccChHHHHHHHhhhhhhhhhc
Q 020332           65 MTYSCGLCGK-GYRSSKALAQHLNSRSHIMRAS   96 (327)
Q Consensus        65 ~~~~C~~C~K-~F~s~~~l~~Hl~skkHk~~~~   96 (327)
                      +.|.|++|++ .+........|+++++|+.+.+
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~  449 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQ  449 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHh
Confidence            5689999997 7999999999999999998644

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=87.44  E-value=0.41  Score=38.80  Aligned_cols=76  Identities=22%  Similarity=0.387  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccCCCCC-c----ccccChHHHHHH-------------h-hhhccCCccc----
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPD-V----EYLKDPKGLLTY-------------L-GLKVKRDFMC----  236 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~-~----~~l~d~~gLl~y-------------l-~~ki~~~~~C----  236 (327)
                      .....|..|...... +++..|++..|.-.... .    +.+....+|+..             + +..+..++.|    
T Consensus         9 ~~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~   87 (109)
T PF12013_consen    9 YRVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDP   87 (109)
T ss_pred             CCEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCC
Confidence            345679999988765 88999999666422111 0    000001111000             0 1233468999    


Q ss_pred             cccCCCCcccCCHHHHHHHHHhc
Q 020332          237 LYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       237 l~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ..|+   ....+...++.|++.+
T Consensus        88 ~~C~---y~~~~~~~m~~H~~~~  107 (109)
T PF12013_consen   88 PHCG---YITRSKKTMRKHWRKE  107 (109)
T ss_pred             CCCC---cEeccHHHHHHHHHHh
Confidence            9997   7889999999999975

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=87.31  E-value=0.3  Score=29.29  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=18.4

Q ss_pred             CccccccccccCChHHHhccccc
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      ...|..||+.| .++.+..|++.
T Consensus         2 l~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    2 LVPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CCcCCCCCCEE-CHHHHHHHHHh
Confidence            46899999999 78888888764

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.14  E-value=0.44  Score=31.56  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=17.4

Q ss_pred             eeecCCcCCcc--cChHHHHHHHhhhhhhhhh
Q 020332           66 TYSCGLCGKGY--RSSKALAQHLNSRSHIMRA   95 (327)
Q Consensus        66 ~~~C~~C~K~F--~s~~~l~~Hl~skkHk~~~   95 (327)
                      .|.|+.|++-|  .+...-++|.+..+|+.+.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv   34 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENV   34 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHH
Confidence            58899999999  3345669999999999853

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.44  E-value=0.26  Score=47.92  Aligned_cols=76  Identities=22%  Similarity=0.392  Sum_probs=56.1

Q ss_pred             CCC--CCCCCCCCChhhhhhhhhhcccCCCCCcc-----------cccChHHHHHHh--hhh---ccCCccccccCCCCc
Q 020332          183 ACC--FMCDLPHDAIENCMVHMHKCHGFFIPDVE-----------YLKDPKGLLTYL--GLK---VKRDFMCLYCNDRCH  244 (327)
Q Consensus       183 ~~C--lfC~~~f~s~~~l~~HM~~~H~f~ip~~~-----------~l~d~~gLl~yl--~~k---i~~~~~Cl~C~~~gk  244 (327)
                      +.|  .-|..+...+..|..|.+..|+++|++..           .|....+|.+|-  |..   .....+|.+|+   +
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~---~  228 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCK---I  228 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhcc---c
Confidence            445  34677778899999999999999997761           245667777763  111   11234899998   8


Q ss_pred             ccCCHHHHHHHHHhcCCc
Q 020332          245 PFNSLEAVRKHMEAKRHC  262 (327)
Q Consensus       245 ~F~s~~~l~~HM~~k~Hc  262 (327)
                      .|-+-..|..|||.+ |-
T Consensus       229 ~FYdDDEL~~HcR~~-HE  245 (493)
T COG5236         229 YFYDDDELRRHCRLR-HE  245 (493)
T ss_pred             eecChHHHHHHHHhh-hh
Confidence            999999999999986 54

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=84.89  E-value=1.6  Score=44.11  Aligned_cols=29  Identities=34%  Similarity=0.626  Sum_probs=27.0

Q ss_pred             ccccccccccCChHHHhccccccccccch
Q 020332            4 LTCNSCNREFNDDAEQKLHYKSDWHRYNL   32 (327)
Q Consensus         4 f~C~~C~~~F~~~~~lr~H~ksdwHryNl   32 (327)
                      +.|.+|+++|.+...++.|..|.-|+-|+
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv  321 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENV  321 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHH
Confidence            78999999999999999999999998775

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.86  E-value=1  Score=47.59  Aligned_cols=69  Identities=20%  Similarity=0.342  Sum_probs=50.9

Q ss_pred             CCCCCCCCCCChhhhhhhhhhcccCCC-CC-c----ccccChHHHHHHhhhhccCCcccc--ccCCCCcccCCHHHHHHH
Q 020332          184 CCFMCDLPHDAIENCMVHMHKCHGFFI-PD-V----EYLKDPKGLLTYLGLKVKRDFMCL--YCNDRCHPFNSLEAVRKH  255 (327)
Q Consensus       184 ~ClfC~~~f~s~~~l~~HM~~~H~f~i-p~-~----~~l~d~~gLl~yl~~ki~~~~~Cl--~C~~~gk~F~s~~~l~~H  255 (327)
                      .|.||...|-...++..||+..|-|-+ ++ .    +|.-+..+|-.|.++.   .|.|-  .|.  ++.|...-.+..|
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~---HflCE~~~C~--~~~f~~~~~~ei~  258 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKG---HFLCEEEFCR--TKKFYVAFELEIE  258 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhc---Cccccccccc--cceeeehhHHHHH
Confidence            699999999999999999998885432 32 1    4566788888887766   57897  886  4666666555555


Q ss_pred             HH
Q 020332          256 ME  257 (327)
Q Consensus       256 M~  257 (327)
                      |+
T Consensus       259 lk  260 (669)
T KOG2231|consen  259 LK  260 (669)
T ss_pred             HH
Confidence            55

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=84.30  E-value=0.41  Score=38.86  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhhhhhhhcc
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   97 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~~   97 (327)
                      --.+.|..|.+-|-+..+|..|.+++-|+.|+.+
T Consensus        53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~Ke   86 (126)
T COG5112          53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKE   86 (126)
T ss_pred             CceeeeehhHHHHHHHHHHHHHhccchhHHHHHH
Confidence            3468999999999999999999999999997664

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=83.53  E-value=0.28  Score=45.38  Aligned_cols=43  Identities=35%  Similarity=0.609  Sum_probs=33.9

Q ss_pred             cccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHHHH
Q 020332            5 TCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQ   84 (327)
Q Consensus         5 ~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l~~   84 (327)
                      -|..|++.|.+...|..|.|.                                       +-|+|.+|-|...+--.|.-
T Consensus        12 wcwycnrefddekiliqhqka---------------------------------------khfkchichkkl~sgpglsi   52 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA---------------------------------------KHFKCHICHKKLFSGPGLSI   52 (341)
T ss_pred             eeeecccccchhhhhhhhhhh---------------------------------------ccceeeeehhhhccCCCcee
Confidence            488999999888888887765                                       34789999888777777777


Q ss_pred             HH
Q 020332           85 HL   86 (327)
Q Consensus        85 Hl   86 (327)
                      |.
T Consensus        53 hc   54 (341)
T KOG2893|consen   53 HC   54 (341)
T ss_pred             eh
Confidence            74

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=82.37  E-value=0.36  Score=46.43  Aligned_cols=66  Identities=20%  Similarity=0.388  Sum_probs=45.6

Q ss_pred             CCCCC--CCCCCCCCChhhhhhhhhhcccCCC----CCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHH
Q 020332          181 DPACC--FMCDLPHDAIENCMVHMHKCHGFFI----PDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRK  254 (327)
Q Consensus       181 ~p~~C--lfC~~~f~s~~~l~~HM~~~H~f~i----p~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~  254 (327)
                      .||+|  .-|++.+.+..-|.-||..-|-.-+    |.++.      .-.|.. + ..+|+|..|+   |.++++..|+-
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~------~~~F~~-~-~KPYrCevC~---KRYKNlNGLKY  416 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEK------MNIFSA-K-DKPYRCEVCD---KRYKNLNGLKY  416 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccc------cccccc-c-CCceeccccc---hhhccCcccee
Confidence            78999  5699999999999999963331111    22211      111111 1 2499999997   99999999998


Q ss_pred             HHH
Q 020332          255 HME  257 (327)
Q Consensus       255 HM~  257 (327)
                      |..
T Consensus       417 Hr~  419 (423)
T COG5189         417 HRK  419 (423)
T ss_pred             ccc
Confidence            864

>PF13821 DUF4187: Domain of unknown function (DUF4187)

Probab=81.00  E-value=1.5  Score=31.50  Aligned_cols=30  Identities=23%  Similarity=0.575  Sum_probs=24.1

Q ss_pred             ChHHHHHHhhhhccCCccccccCCCCcccCCHHHHH
Q 020332          218 DPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVR  253 (327)
Q Consensus       218 d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~  253 (327)
                      .+..|+.||+.+   .+-|.||+   ..|.+...|.
T Consensus        15 ~L~~l~~YLR~~---~~YC~~Cg---~~Y~d~~dL~   44 (55)
T PF13821_consen   15 RLDKLLSYLREE---HNYCFWCG---TKYDDEEDLE   44 (55)
T ss_pred             HHHHHHHHHHhh---CceeeeeC---CccCCHHHHH
Confidence            356788899877   47899996   8899988775

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.87  E-value=0.61  Score=30.89  Aligned_cols=34  Identities=32%  Similarity=0.579  Sum_probs=17.7

Q ss_pred             CCCcccccccccc-CC-hHHHhccccccccccchhh
Q 020332            1 MPGLTCNSCNREF-ND-DAEQKLHYKSDWHRYNLKR   34 (327)
Q Consensus         1 ~~~f~C~~C~~~F-~~-~~~lr~H~ksdwHryNlKR   34 (327)
                      |+.|-|..|++.| .+ +..-+.|-+.--|+-|.++
T Consensus         1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             --S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CcCeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            7889999999999 34 4666999888767766654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=80.45  E-value=0.91  Score=32.74  Aligned_cols=27  Identities=26%  Similarity=0.488  Sum_probs=24.3

Q ss_pred             CCCCeeecCCcCCcccChHHHHHHHhh
Q 020332           62 ATPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        62 ~~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      .++..+.|+-|++-|+.+..|.+|.+.
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            477889999999999999999999864

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=80.38  E-value=0.63  Score=52.21  Aligned_cols=29  Identities=28%  Similarity=0.472  Sum_probs=26.2

Q ss_pred             eecCCcCCcccChHHHHHHHhhhhhhhhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSRSHIMRA   95 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~skkHk~~~   95 (327)
                      |.|.+|...|..+.+|+.||++-.|+.++
T Consensus      1329 ~~c~~c~~~~~~~~alqihm~~~~~~~kt 1357 (1406)
T KOG1146|consen 1329 YHCLACEVLLSGREALQIHMRSSAHRRKT 1357 (1406)
T ss_pred             ccchHHHhhcchhHHHHHHHHHhhhcccC
Confidence            44999999999999999999999998853

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=80.30  E-value=0.89  Score=31.93  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.2

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhhhhh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRSHIM   93 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~   93 (327)
                      .++-.|+.|...|.   .|..|+.|++|+.
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~   29 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRR   29 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHH
Confidence            45668999999997   5789999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	5e-12
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	4e-05

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127

 Score = 61.1 bits (147), Expect = 5e-12
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 4   LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNAT 63
             C  C+     ++++  HY+S  H   ++R +A   G       A++   A  +  +  
Sbjct: 33  TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSV--PAKKFKAAPAEISDGE 90

Query: 64  PMTYSCGLCGKGYRSSKALAQHLNSRSHIMR 94
             +  C +C   + S      H   ++HI  
Sbjct: 91  DRSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 4   LTCNSCNREFNDDAEQKLHYKSDWH-RYNLKRKVAGVPGVTEALFLARQAALAQEKNKNA 62
             C  C+  ++   E  +H     H R +        P         R+ +L + + K  
Sbjct: 20  FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS---KPRKRSLLEMEGKED 76

Query: 63  TPMTYSCGLCGKGYRSSKALAQHLNSRSH 91
                 C  CG  + S + L+ H+    H
Sbjct: 77  AQKVLKCMYCGHSFESLQDLSVHMIKTKH 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.7
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.63
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.59
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.59
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.53
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.5
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.45
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.44
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.37
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.36
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.36
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.32
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.32
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.26
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.24
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.24
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.24
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.23
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.23
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.23
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.22
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.22
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.2
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.18
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.18
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.17
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.15
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.13
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.03
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.01
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.0
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.0
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.0
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.0
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.95
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.95
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.93
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.9
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.9
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.89
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.87
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.84
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.84
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.82
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.82
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.79
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.79
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.79
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.78
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.78
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.77
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.77
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.76
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.76
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.74
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.72
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.71
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.7
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.64
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.61
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.61
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.6
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.58
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.57
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.56
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.55
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.55
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.52
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.5
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.5
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.48
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.43
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.43
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.41
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.38
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.37
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.37
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.3
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.29
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.25
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.1
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.1
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.07
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.06
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.99
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	97.97
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.88
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	97.87
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	97.85
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.83
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.82
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.81
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.81
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.81
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.81
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.81
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.8
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	97.8
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.8
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.79
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.79
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.79
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.79
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.79
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.79
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.79
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.79
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.79
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.78
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	97.78
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.78
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	97.78
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.78
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.78
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.78
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.78
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.78
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	97.77
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.77
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.77
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.77
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.77
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.77
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.77
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.77
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	97.77
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	97.77
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.77
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.76
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.76
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.76
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.76
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.76
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.76
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.76
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.76
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	97.76
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.76
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.76
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.76
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.76
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.76
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.76
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.76
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.75
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.75
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.75
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	97.75
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.75
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.75
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.75
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	97.75
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.74
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.74
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	97.74
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.74
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.74
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.74
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.74
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.74
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	97.73
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	97.73
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.73
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.73
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.73
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.72
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.72
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.72
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.72
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.72
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	97.72
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.72
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.72
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.72
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	97.72
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.72
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.72
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.72
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.72
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.72
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.72
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	97.72
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.71
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.71
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.71
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	97.71
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.71
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	97.71
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.71
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.71
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.7
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.7
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.7
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.7
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	97.7
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	97.69
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.69
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	97.69
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.69
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.69
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.69
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.69
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.69
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.69
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.69
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.69
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.68
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.68
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.67
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.67
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.67
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.67
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.67
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.67
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	97.66
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.66
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.66
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.65
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.65
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.65
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.64
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.63
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.63
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.63
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.62
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.6
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.6
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.6
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.59
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.57
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.57
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	97.56
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.55
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.53
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	97.53
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.53
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.52
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.51
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	97.51
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.5
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	97.5
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.5
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.49
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.48
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	97.48
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.47
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.47
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.46
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	97.46
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.45
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.45
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.44
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.43
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	97.42
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.42
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.41
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.4
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.37
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.36
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.35
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.34
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.34
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.34
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.33
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.32
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	97.3
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.29
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.29
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.29
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.28
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.27
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.26
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.26
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.25
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.25
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	97.25
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	97.25
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.24
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.23
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.22
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.22
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.31
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.22
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.21
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.21
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.21
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	97.2
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	97.2
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	97.2
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.2
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.2
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.18
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.17
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.16
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	97.16
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.11
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.1
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	97.09
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.07
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	97.06
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.05
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.05
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.04
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.04
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.02
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.01
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.03
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	96.96
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.96
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.01
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	96.95
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	95.99
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	96.93
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	96.91
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	96.91
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	96.9
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	96.9
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.89
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	96.87
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	96.85
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	96.85
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	96.84
1ard_A	29	Yeast transcription factor ADR1; transcription reg	96.84
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.8
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	96.79
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	96.79
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.78
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.77
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.72
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.7
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	96.69
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	96.68
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	95.7
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	96.67
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.67
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	95.69
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.64
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	96.62
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	96.62
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.52
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.52
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	96.52
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	96.52
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	96.52
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.5
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.45
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	96.43
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	96.43
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.4
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	96.38
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.37
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	96.35
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	96.34
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	96.33
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.28
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.27
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.25
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.24
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	96.23
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.15
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	96.14
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	96.12
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.03
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	95.94
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.84
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	95.83
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	95.71
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.58
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.34
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	95.22
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	95.04
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	94.7
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	94.3
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	93.68
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.37
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.31
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	90.82
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	90.41
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	89.57
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.25
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	83.85
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	83.41
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	82.99
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	82.53

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.70  E-value=1.3e-17  Score=145.10  Aligned_cols=77  Identities=19%  Similarity=0.448  Sum_probs=50.3

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHH----HHHHHHHHHHHHhhhcCCCCeeecCCcCCccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEA----LFLARQAALAQEKNKNATPMTYSCGLCGKGYR   77 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~----~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~   77 (327)
                      .+|.|..|++.|.+...|+.|+++  |.        +..|+.|.    .|..+ ..|..|++.|.++++|.|.+|++.|.
T Consensus        20 ~~~~C~~C~~~f~~~~~l~~H~~~--h~--------~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~C~~~f~   88 (190)
T 2i13_A           20 KPYACPECGKSFSRSDHLAEHQRT--HT--------GEKPYKCPECGKSFSDK-KDLTRHQRTHTGEKPYKCPECGKSFS   88 (190)
T ss_dssp             -----------CCSSHHHHHGGGC--C-----------CCEECTTTCCEESSH-HHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCcCCCCccccCCHHHHHHHHHH--cC--------CCCCccCCCcCchhCCH-HHHHHHHHhcCCCCCccCcccCCccC
Confidence            479999999999999999999998  42        22334333    34433 56888888888888999999999999


Q ss_pred             ChHHHHHHHhhh
Q 020332           78 SSKALAQHLNSR   89 (327)
Q Consensus        78 s~~~l~~Hl~sk   89 (327)
                      +...|..|++..
T Consensus        89 ~~~~l~~H~~~h  100 (190)
T 2i13_A           89 QRANLRAHQRTH  100 (190)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhc
Confidence            999999998753

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=4.2e-16  Score=125.48  Aligned_cols=112  Identities=21%  Similarity=0.432  Sum_probs=93.9

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++  |                                 .++++|.|.+|++.|.+...
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   50 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRK--H---------------------------------TGEKPFECPKCGKCYFRKEN   50 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHH--H---------------------------------SSCCSCBCTTTCCBCSSHHH
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHh--C---------------------------------CCCCCeECCCCCchhcCHHH
Confidence            579999999999999999999987  3                                 14578999999999999999


Q ss_pred             HHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccccccCCC
Q 020332           82 LAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVG  161 (327)
Q Consensus        82 l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~  161 (327)
                      |..|++.... .                 .                                                  
T Consensus        51 l~~H~~~~~~-~-----------------~--------------------------------------------------   62 (124)
T 2dlq_A           51 LLEHEARNCM-N-----------------R--------------------------------------------------   62 (124)
T ss_dssp             HHHHHHHCCC-C-----------------S--------------------------------------------------
T ss_pred             HHHHHhhhhc-C-----------------C--------------------------------------------------
Confidence            9999864210 0                 0                                                  


Q ss_pred             CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCC
Q 020332          162 SPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCND  241 (327)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~  241 (327)
                                       ...++.|.+|++.|.+...|..||..|++                    +   .+|.|..|+ 
T Consensus        63 -----------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~-  101 (124)
T 2dlq_A           63 -----------------SEQVFTCSVCQETFRRRMELRLHMVSHTG--------------------E---MPYKCSSCS-  101 (124)
T ss_dssp             -----------------CCCCEECSSSCCEESSHHHHHHHHHHHSS--------------------S---CSEECSSSC-
T ss_pred             -----------------CCCCeECCCCCCccCCHHHHHHHHHHcCC--------------------C---CCccCCCcc-
Confidence                             01367899999999999999999998775                    2   379999997 


Q ss_pred             CCcccCCHHHHHHHHHhc
Q 020332          242 RCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       242 ~gk~F~s~~~l~~HM~~k  259 (327)
                        +.|.+...|+.||+..
T Consensus       102 --~~f~~~~~l~~H~~~~  117 (124)
T 2dlq_A          102 --QQFMQKKDLQSHMIKL  117 (124)
T ss_dssp             --CEESSHHHHHHHHHHT
T ss_pred             --chhCCHHHHHHHHHHH
Confidence              9999999999999854

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.59  E-value=2.4e-15  Score=130.74  Aligned_cols=76  Identities=16%  Similarity=0.364  Sum_probs=61.3

Q ss_pred             CCccc--cccccccCChHHHhccccccccccchhhhhcCCCCccH--H----HHHHHHHHHHHHhhhcCCCCeeecC--C
Q 020332            2 PGLTC--NSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTE--A----LFLARQAALAQEKNKNATPMTYSCG--L   71 (327)
Q Consensus         2 ~~f~C--~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~--~----~F~~k~~~l~~~~~~h~~~~~~~C~--~   71 (327)
                      .+|.|  ..|++.|.+...|+.|+++  |.        +..|+.|  .    .|..+ ..|..|++.|.++++|.|.  .
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~~--h~--------~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~~~~   79 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLCK--HT--------GEKPFPCKEEGCEKGFTSL-HHLTRHSLTHTGEKNFTCDSDG   79 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHHH--HH--------CCCSSCCSSTTCCCCCSSH-HHHHHHHTTTTTCCCEECCSSS
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHHh--cC--------CCCCccCCCCCCChhhCCH-HHHHHHHHHccCCCceeCCCCC
Confidence            57999  6899999999999999998  42        3344444  2    45544 5788899889888999999  8


Q ss_pred             cCCcccChHHHHHHHhh
Q 020332           72 CGKGYRSSKALAQHLNS   88 (327)
Q Consensus        72 C~K~F~s~~~l~~Hl~s   88 (327)
                      |++.|.+...|..|++.
T Consensus        80 C~~~f~~~~~l~~H~~~   96 (190)
T 1tf6_A           80 CDLRFTTKANMKKHFNR   96 (190)
T ss_dssp             CCCEESCHHHHHHHHHT
T ss_pred             CCCccCCHHHHHHHHHH
Confidence            99999999999999843

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.59  E-value=7.1e-16  Score=129.22  Aligned_cols=136  Identities=21%  Similarity=0.409  Sum_probs=105.4

Q ss_pred             CCccccccccccCChHHHhcccccc-ccccchhhhhcCCCCccH---------HHHHHHHHHHHHHhhhcCCCCeeecCC
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSD-WHRYNLKRKVAGVPGVTE---------ALFLARQAALAQEKNKNATPMTYSCGL   71 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksd-wHryNlKRkva~lppv~~---------~~F~~k~~~l~~~~~~h~~~~~~~C~~   71 (327)
                      .+|.|..|++.|.+...|+.|++.. .|.        +..|+.|         ..|..+ ..|..|++.|.++++|.|.+
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~--------~~~~~~C~~c~C~~c~~~f~~~-~~l~~H~~~h~~~~~~~C~~   72 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHG--------ERKEFVCHWGGCSRELRPFKAQ-YMLVVHMRRHTGEKPHKCTF   72 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSS--------CSSCCCCCBTTCTTTTCCCSSH-HHHHHHTHHHHCCCCCCCCS
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCC--------CCcceeCCCCCccchhhhhhhH-HHHHHHHHhcCCCCCccCCC
Confidence            4789999999999999999999852 132        2223322         235544 56888988888889999986


Q ss_pred             --cCCcccChHHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhh
Q 020332           72 --CGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVS  149 (327)
Q Consensus        72 --C~K~F~s~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~  149 (327)
                        |++.|.+...|..|++.  |..                                                        
T Consensus        73 ~~C~~~f~~~~~l~~H~~~--h~~--------------------------------------------------------   94 (155)
T 2gli_A           73 EGCRKSYSRLENLKTHLRS--HTG--------------------------------------------------------   94 (155)
T ss_dssp             TTCCCCCSSHHHHHHHHHH--TTT--------------------------------------------------------
T ss_pred             CCCCCcccCHHHHHHHHHH--cCC--------------------------------------------------------
Confidence              99999999999999864  210                                                        


Q ss_pred             hhcccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCC--CCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhh
Q 020332          150 EATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLG  227 (327)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Clf--C~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~  227 (327)
                                                    ..|+.|.+  |++.|.+...|..||...|.                   +
T Consensus        95 ------------------------------~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------------~  125 (155)
T 2gli_A           95 ------------------------------EKPYMCEHEGCSKAFSNASDRAKHQNRTHS-------------------N  125 (155)
T ss_dssp             ------------------------------CCCEECCSTTCCCEESSSSTTHHHHHHTTC-------------------S
T ss_pred             ------------------------------CCCeeCCCCCCCCccCCHHHHHHHHHHhcC-------------------C
Confidence                                          13678998  99999999999999944453                   1


Q ss_pred             hhccCCccccc--cCCCCcccCCHHHHHHHHHhc
Q 020332          228 LKVKRDFMCLY--CNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       228 ~ki~~~~~Cl~--C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      +   .+|.|..  |+   +.|.+...|+.||+..
T Consensus       126 ~---~~~~C~~~~C~---~~f~~~~~L~~H~~~h  153 (155)
T 2gli_A          126 E---KPYVCKLPGCT---KRYTDPSSLRKHVKTV  153 (155)
T ss_dssp             C---CCEECCSTTTC---CEESSHHHHHHHHHHS
T ss_pred             C---CCeeCCCCCCc---cccCCHHHHHHHHHhh
Confidence            2   3789988  97   9999999999999864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.53  E-value=8.9e-15  Score=116.98  Aligned_cols=108  Identities=20%  Similarity=0.483  Sum_probs=91.9

Q ss_pred             CCccccc--cccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecC--CcCCccc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCG--LCGKGYR   77 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~--~C~K~F~   77 (327)
                      .+|.|..  |++.|.+...|+.|+++  |                                 .++++|.|.  .|++.|.
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~~~C~~~f~   49 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRK--H---------------------------------TGEKPYQCDFKDCERRFS   49 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHH--H---------------------------------HTTCCEECCSTTCCCEES
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHh--h---------------------------------CCCCCccCCCCCCcCccC
Confidence            5799997  99999999999999987  4                                 145689999  7999999


Q ss_pred             ChHHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccccc
Q 020332           78 SSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTN  157 (327)
Q Consensus        78 s~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~  157 (327)
                      +...|..|++.  |..                                                                
T Consensus        50 ~~~~l~~H~~~--h~~----------------------------------------------------------------   63 (119)
T 2jp9_A           50 RSDQLKRHQRR--HTG----------------------------------------------------------------   63 (119)
T ss_dssp             SHHHHHHHHHH--HHC----------------------------------------------------------------
T ss_pred             CHHHHHHHHHH--cCC----------------------------------------------------------------
Confidence            99999999975  211                                                                


Q ss_pred             cCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccc-
Q 020332          158 LNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMC-  236 (327)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~C-  236 (327)
                                            ..++.|..|++.|.+...|..||+.|+|                    +   .+|.| 
T Consensus        64 ----------------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~   98 (119)
T 2jp9_A           64 ----------------------VKPFQCKTCQRKFSRSDHLKTHTRTHTG--------------------E---KPFSCR   98 (119)
T ss_dssp             ----------------------CCCEECTTTCCEESCHHHHHHHHHHHHT--------------------C---CCEECC
T ss_pred             ----------------------CCCccCCccCchhCCHHHHHHHHHHhcC--------------------C---CCeeCC
Confidence                                  0257899999999999999999998765                    2   36899 


Q ss_pred             -cccCCCCcccCCHHHHHHHHHh
Q 020332          237 -LYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       237 -l~C~~~gk~F~s~~~l~~HM~~  258 (327)
                       ..|+   +.|.+...|+.||+.
T Consensus        99 ~~~C~---~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           99 WPSCQ---KKFARSDELVRHHNM  118 (119)
T ss_dssp             STTCC---CEESSHHHHHHHHHT
T ss_pred             CCCCc---cccCCHHHHHHHHhc
Confidence             7897   999999999999984

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.50  E-value=1.5e-14  Score=116.86  Aligned_cols=108  Identities=25%  Similarity=0.537  Sum_probs=90.3

Q ss_pred             CCcccc--ccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccCh
Q 020332            2 PGLTCN--SCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSS   79 (327)
Q Consensus         2 ~~f~C~--~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~   79 (327)
                      .+|.|.  .|++.|.+...|+.|+++  |                                  ++++|.|.+|++.|.+.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h----------------------------------~~~~~~C~~C~~~f~~~   47 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHT--H----------------------------------GPRVHVCAECGKAFVES   47 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGG--G----------------------------------SCCCEECTTTCCEESSH
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHH--c----------------------------------CCCCeECCCCCchhCCH
Confidence            479999  899999999999999987  4                                  34689999999999999


Q ss_pred             HHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccccccC
Q 020332           80 KALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLN  159 (327)
Q Consensus        80 ~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~~~  159 (327)
                      ..|..|++.  |..                                                                  
T Consensus        48 ~~l~~H~~~--h~~------------------------------------------------------------------   59 (124)
T 1ubd_C           48 SKLKRHQLV--HTG------------------------------------------------------------------   59 (124)
T ss_dssp             HHHHHHGGG--TSC------------------------------------------------------------------
T ss_pred             HHHHHHHHH--cCC------------------------------------------------------------------
Confidence            999999863  100                                                                  


Q ss_pred             CCCCCCCCCccCCCCCCCCCCCCCCCCC--CCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCcccc
Q 020332          160 VGSPADDDLEEDDDDGAFEEFDPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCL  237 (327)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~p~~Clf--C~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl  237 (327)
                                          ..++.|.+  |++.|.+...|..||+.|+|                    +   .+|.|.
T Consensus        60 --------------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~   96 (124)
T 1ubd_C           60 --------------------EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG--------------------D---RPYVCP   96 (124)
T ss_dssp             --------------------CCCEECCSTTCCCEESCHHHHHHHHHHHHC--------------------C---CCCCCC
T ss_pred             --------------------CCCeeCCCCCCcCccCCHHHHHHHHHHhCC--------------------C---CceECC
Confidence                                12578986  99999999999999998765                    2   378996


Q ss_pred             c--cCCCCcccCCHHHHHHHHHhc
Q 020332          238 Y--CNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       238 ~--C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      +  |+   +.|.+...|+.||+.+
T Consensus        97 ~~~C~---~~f~~~~~L~~H~~~H  117 (124)
T 1ubd_C           97 FDGCN---KKFAQSTNLKSHILTH  117 (124)
T ss_dssp             STTCC---CCCSSTTTTHHHHHHH
T ss_pred             CCCCC---CccCCHHHHHHHHHHH
Confidence            5  97   9999999999999864

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.45  E-value=6.8e-14  Score=117.40  Aligned_cols=117  Identities=25%  Similarity=0.417  Sum_probs=91.1

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++. |.        +.+|.                 ....-..|.|.+|++.|.+...
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~-H~--------~~~~~-----------------~~~~~~~~~C~~C~~~f~~~~~   77 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTME-HV--------GGPEQ-----------------NNHVCYWEECPREGKSFKAKYK   77 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTT-TS--------CCTTC-----------------SSCCCCBTTCTTSSCCCSSHHH
T ss_pred             cccccccCCcccCCHHHHHHHHHhh-cC--------CCccc-----------------CCccccccCCCCcccccCCHHH
Confidence            3689999999999999999999874 42        11110                 0001234899999999999999


Q ss_pred             HHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccccccCCC
Q 020332           82 LAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVG  161 (327)
Q Consensus        82 l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~  161 (327)
                      |..|++.+.  .                                                                    
T Consensus        78 l~~H~~~h~--~--------------------------------------------------------------------   87 (155)
T 2rpc_A           78 LVNHIRVHT--G--------------------------------------------------------------------   87 (155)
T ss_dssp             HHHHTHHHH--C--------------------------------------------------------------------
T ss_pred             HHHHHHhcC--C--------------------------------------------------------------------
Confidence            999987421  1                                                                    


Q ss_pred             CCCCCCCccCCCCCCCCCCCCCCCCC--CCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccc-
Q 020332          162 SPADDDLEEDDDDGAFEEFDPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY-  238 (327)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~Clf--C~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~-  238 (327)
                                        ..++.|.+  |++.|.+...|..||+.|+|                    +   .+|.|.. 
T Consensus        88 ------------------~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~--------------------~---~~~~C~~~  126 (155)
T 2rpc_A           88 ------------------EKPFPCPFPGCGKIFARSENLKIHKRTHTG--------------------E---KPFKCEFE  126 (155)
T ss_dssp             ------------------CCSEECSCTTTCCEESCHHHHHHHHTTTCS--------------------S---CSBCCSST
T ss_pred             ------------------CCcccCCcCCCCCccCCHHHHHHHHHhhCC--------------------C---CCccCCCC
Confidence                              02578988  99999999999999998765                    2   3799997 


Q ss_pred             -cCCCCcccCCHHHHHHHHHh
Q 020332          239 -CNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       239 -C~~~gk~F~s~~~l~~HM~~  258 (327)
                       |+   +.|.+...|+.||+.
T Consensus       127 ~C~---k~f~~~~~L~~H~~~  144 (155)
T 2rpc_A          127 GCD---RRFANSSDRKKHMHV  144 (155)
T ss_dssp             TCC---CCBSSHHHHHHSSTT
T ss_pred             CCC---CccCCHHHHHHHHHH
Confidence             97   999999999999985

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.44  E-value=4.7e-14  Score=117.77  Aligned_cols=104  Identities=16%  Similarity=0.235  Sum_probs=83.8

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      +|.|..|+++|.+...|+.|+++  |                                 +++++|.|++|++.|.+...|
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~~--H---------------------------------~~~k~~~C~~C~k~F~~~~~L   66 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFNI--H---------------------------------SWEKKYPCRYCEKVFPLAEYR   66 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHHH--H---------------------------------HCCSCEECSSSSCEESSHHHH
T ss_pred             CeECCCCCCCcCCHHHHHHHHHH--c---------------------------------CCCCCeeCCccCeecccccch
Confidence            69999999999999999999987  5                                 256899999999999999999


Q ss_pred             HHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccccccCCCC
Q 020332           83 AQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGS  162 (327)
Q Consensus        83 ~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~  162 (327)
                      ..|++.  |..                                                                     
T Consensus        67 ~~H~~~--H~~---------------------------------------------------------------------   75 (133)
T 2lt7_A           67 TKHEIH--HTG---------------------------------------------------------------------   75 (133)
T ss_dssp             HHHHHH--HHT---------------------------------------------------------------------
T ss_pred             hhhccc--cCC---------------------------------------------------------------------
Confidence            999864  311                                                                     


Q ss_pred             CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCC
Q 020332          163 PADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDR  242 (327)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~  242 (327)
                                       ..|+.|..|++.|.+...|..||+.+||-. |..                -...|.|..|+  
T Consensus        76 -----------------~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~-p~~----------------~~k~~~C~~C~--  119 (133)
T 2lt7_A           76 -----------------ERRYQCLACGKSFINYQFMSSHIKSVHSQD-PSG----------------DSKLYRLHPCR--  119 (133)
T ss_dssp             -----------------CCCEEESSSCCEESSHHHHHHHHHHHTCCC-TTS----------------SSCCEEECCCC--
T ss_pred             -----------------CccccCCCCCCCcCCHHHHHHHhHHhcCCC-CCC----------------CCCCeecCCCC--
Confidence                             136789999999999999999999999731 110                01258999996  


Q ss_pred             CcccCCH
Q 020332          243 CHPFNSL  249 (327)
Q Consensus       243 gk~F~s~  249 (327)
                       +.|...
T Consensus       120 -k~~~~~  125 (133)
T 2lt7_A          120 -SLQIRQ  125 (133)
T ss_dssp             -SSCCCC
T ss_pred             -chhhhc
Confidence             777643

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3.5e-13  Score=107.59  Aligned_cols=54  Identities=20%  Similarity=0.297  Sum_probs=46.3

Q ss_pred             CCCCCCCCCCC--CChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPH--DAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f--~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      .+.|..|++.|  .+...|..||+.|++                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus        50 ~~~C~~C~~~f~f~~~~~l~~H~~~H~~--------------------~---~~~~C~~C~---k~f~~~~~L~~H~~~h  103 (115)
T 2dmi_A           50 HETDNNNPKRWSKPRKRSLLEMEGKEDA--------------------Q---KVLKCMYCG---HSFESLQDLSVHMIKT  103 (115)
T ss_dssp             CCCCCCCCSCCSSCCCCCCCCCCCSCCC--------------------C---SSCBCSSSC---CBCSSHHHHHHHHHHT
T ss_pred             CccCCCCCcccccccHHHHHHHhhccCC--------------------C---cceECCCCC---CccCCHHHHHHHHHHh
Confidence            34699999999  899999999998654                    2   379999997   9999999999999986


Q ss_pred             CC
Q 020332          260 RH  261 (327)
Q Consensus       260 ~H  261 (327)
                      .|
T Consensus       104 h~  105 (115)
T 2dmi_A          104 KH  105 (115)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.36  E-value=3.2e-13  Score=112.68  Aligned_cols=94  Identities=20%  Similarity=0.352  Sum_probs=77.8

Q ss_pred             hhhcCCCCeeecCCcCCcccChHHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccc
Q 020332           58 KNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDE  137 (327)
Q Consensus        58 ~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e  137 (327)
                      +.+|+|+++|.|++|++.|.+...|..|++.  |..                                            
T Consensus        14 ~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~--H~~--------------------------------------------   47 (133)
T 2lt7_A           14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNI--HSW--------------------------------------------   47 (133)
T ss_dssp             EEEETTEEEEEETTTCCEESCHHHHHHHHHH--HHC--------------------------------------------
T ss_pred             eeecCCCcCeECCCCCCCcCCHHHHHHHHHH--cCC--------------------------------------------
Confidence            3457799999999999999999999999974  311                                            


Q ss_pred             cccCCcchhhhhhhcccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCccccc
Q 020332          138 WEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLK  217 (327)
Q Consensus       138 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~  217 (327)
                                                                ..|+.|..|++.|.+...|..||..|.|          
T Consensus        48 ------------------------------------------~k~~~C~~C~k~F~~~~~L~~H~~~H~~----------   75 (133)
T 2lt7_A           48 ------------------------------------------EKKYPCRYCEKVFPLAEYRTKHEIHHTG----------   75 (133)
T ss_dssp             ------------------------------------------CSCEECSSSSCEESSHHHHHHHHHHHHT----------
T ss_pred             ------------------------------------------CCCeeCCccCeecccccchhhhccccCC----------
Confidence                                                      1367899999999999999999987544          


Q ss_pred             ChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhcCCcccCC
Q 020332          218 DPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHF  266 (327)
Q Consensus       218 d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k~Hcki~~  266 (327)
                                ++   +|.|..|+   +.|.+...|+.||+.. |..-++
T Consensus        76 ----------~k---~~~C~~C~---k~F~~~~~L~~H~~~h-h~~~p~  107 (133)
T 2lt7_A           76 ----------ER---RYQCLACG---KSFINYQFMSSHIKSV-HSQDPS  107 (133)
T ss_dssp             ----------CC---CEEESSSC---CEESSHHHHHHHHHHH-TCCCTT
T ss_pred             ----------Cc---cccCCCCC---CCcCCHHHHHHHhHHh-cCCCCC
Confidence                      33   79999997   9999999999999975 544443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.36  E-value=1.1e-12  Score=113.87  Aligned_cols=171  Identities=15%  Similarity=0.227  Sum_probs=96.5

Q ss_pred             hHHHhccccccccccchhhhhcCCCCccHHHHHHH---HHHHHHHhhhcCCCCeeecCCcCCcccChHHHHHHHhhhhhh
Q 020332           16 DAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLAR---QAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHI   92 (327)
Q Consensus        16 ~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k---~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skkHk   92 (327)
                      ...|..|++.  |        .+..|+.|......   ...|..|++.|.++++|.|.+|++.|.+...|..|++.....
T Consensus         6 ~~~l~~h~~~--~--------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   75 (190)
T 2i13_A            6 SSSSVAQAAL--E--------PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE   75 (190)
T ss_dssp             -----------------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCC
T ss_pred             hccchhhhhh--c--------CCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCC
Confidence            4566777776  3        24456666644332   257889999998899999999999999999999999864321


Q ss_pred             hhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhhhhcccccccCCCCCCCCCCccCC
Q 020332           93 MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDD  172 (327)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (327)
                      ..-.-             +.-..                     .+.  ....+.......                   
T Consensus        76 ~~~~C-------------~~C~~---------------------~f~--~~~~l~~H~~~h-------------------  100 (190)
T 2i13_A           76 KPYKC-------------PECGK---------------------SFS--QRANLRAHQRTH-------------------  100 (190)
T ss_dssp             CCEEC-------------TTTCC---------------------EES--CHHHHHHHHHHH-------------------
T ss_pred             CCccC-------------cccCC---------------------ccC--CHHHHHHHHHhc-------------------
Confidence            10000             00000                     000  000111110000                   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccC--CCCCc--ccccChHHHHHHhhhhcc-CCccccccCCCCcccC
Q 020332          173 DDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGF--FIPDV--EYLKDPKGLLTYLGLKVK-RDFMCLYCNDRCHPFN  247 (327)
Q Consensus       173 ~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f--~ip~~--~~l~d~~gLl~yl~~ki~-~~~~Cl~C~~~gk~F~  247 (327)
                           ....++.|..|++.|.+...|..||..|++.  |.+..  ..+.....|..|+..... .+|.|..|+   +.|.
T Consensus       101 -----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~---~~f~  172 (190)
T 2i13_A          101 -----TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG---KSFS  172 (190)
T ss_dssp             -----HTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC---CEES
T ss_pred             -----CCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCC---CccC
Confidence                 0124789999999999999999999987763  22222  345788899999865543 479999997   9999


Q ss_pred             CHHHHHHHHHhc
Q 020332          248 SLEAVRKHMEAK  259 (327)
Q Consensus       248 s~~~l~~HM~~k  259 (327)
                      +...|+.||+..
T Consensus       173 ~~~~L~~H~~~H  184 (190)
T 2i13_A          173 RRDALNVHQRTH  184 (190)
T ss_dssp             SHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhc
Confidence            999999999853

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.32  E-value=6.7e-13  Score=99.00  Aligned_cols=51  Identities=22%  Similarity=0.589  Sum_probs=45.3

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      ||.|..|++.|.+...|+.|+++  |                                 .++++|.|..|++.|.+...|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~l   45 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLI--H---------------------------------SDTRPYPCQYCGKRFHQKSDM   45 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH--H---------------------------------HTCCCEECSSSCCEESSHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHH--c---------------------------------CCCCCeeCCcCChhhCCHHHH
Confidence            68999999999999999999987  4                                 145689999999999999999


Q ss_pred             HHHHhh
Q 020332           83 AQHLNS   88 (327)
Q Consensus        83 ~~Hl~s   88 (327)
                      ..|++.
T Consensus        46 ~~H~~~   51 (82)
T 2kmk_A           46 KKHTFI   51 (82)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.32  E-value=1.7e-12  Score=99.90  Aligned_cols=52  Identities=25%  Similarity=0.514  Sum_probs=46.0

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++  |                                 .++++|.|.+|++.|.+...
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   51 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRC--H---------------------------------TGVKPYKCKTCDYAAADSSS   51 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGG--C---------------------------------CCCCSEECSSSCCEESSHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHh--c---------------------------------CCCCCEeCCCCCCccCCHHH
Confidence            589999999999999999999997  4                                 14468999999999999999


Q ss_pred             HHHHHhh
Q 020332           82 LAQHLNS   88 (327)
Q Consensus        82 l~~Hl~s   88 (327)
                      |..|++.
T Consensus        52 l~~H~~~   58 (96)
T 2dmd_A           52 LNKHLRI   58 (96)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.26  E-value=6.2e-12  Score=98.66  Aligned_cols=52  Identities=25%  Similarity=0.620  Sum_probs=45.7

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++  |                                 .++++|.|.+|++.|.+...
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   60 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERT--H---------------------------------TDERPYTCDICHKAFRRQDH   60 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHH--H---------------------------------CCSCCCBCSSSCCBCSCHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH--c---------------------------------CCCCCcCCCCccchhCCHHH
Confidence            479999999999999999999887  3                                 14578999999999999999


Q ss_pred             HHHHHhh
Q 020332           82 LAQHLNS   88 (327)
Q Consensus        82 l~~Hl~s   88 (327)
                      |..|++.
T Consensus        61 l~~H~~~   67 (106)
T 2ee8_A           61 LRDHRYI   67 (106)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHH
Confidence            9999853

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.24  E-value=1e-11  Score=95.59  Aligned_cols=52  Identities=19%  Similarity=0.366  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ++.|..|++.|.+...|..||..|++                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus        36 ~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~h   87 (96)
T 2dmd_A           36 PYKCKTCDYAAADSSSLNKHLRIHSD--------------------E---RPFKCQICP---YASRNSSQLTVHLRSH   87 (96)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSCC--------------------C---CCEECSSSS---CEESSHHHHHHHHTTC
T ss_pred             CEeCCCCCCccCCHHHHHHHHHHhCC--------------------C---CCccCCCCC---CccCCHHHHHHHHHHh
Confidence            67899999999999999999998765                    2   368999997   9999999999999854

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.24  E-value=6.5e-12  Score=96.46  Aligned_cols=52  Identities=29%  Similarity=0.649  Sum_probs=46.4

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++  |                                 .++++|.|.+|++.|.+...
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   50 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLS--H---------------------------------SGEKPYSCPVCGLRFKRKDR   50 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHH--S---------------------------------CSSCSEECSSSCCEESCHHH
T ss_pred             CCeECCCCCCccCChHHHHHHHHh--c---------------------------------CCCCCCcCCCCCCccCCHHH
Confidence            579999999999999999999987  4                                 14578999999999999999


Q ss_pred             HHHHHhh
Q 020332           82 LAQHLNS   88 (327)
Q Consensus        82 l~~Hl~s   88 (327)
                      |..|++.
T Consensus        51 l~~H~~~   57 (95)
T 2yt9_A           51 MSYHVRS   57 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999964

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.24  E-value=1.2e-11  Score=94.91  Aligned_cols=56  Identities=21%  Similarity=0.542  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhcCC
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRH  261 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k~H  261 (327)
                      ++.|..|++.|.+...|..||+.|++.                     ...+|.|..|+   +.|.+...|+.||+.. |
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~---------------------~~~~~~C~~C~---~~f~~~~~L~~H~~~~-H   89 (95)
T 2yt9_A           35 PYSCPVCGLRFKRKDRMSYHVRSHDGS---------------------VGKPYICQSCG---KGFSRPDHLNGHIKQV-H   89 (95)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHHHCCC---------------------CCSSBCCSSSC---CCBSSHHHHHHHHHHT-S
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCC---------------------CCCceECCCcc---chhCCHHHHHHHHHHh-c
Confidence            678999999999999999999987751                     02379999997   9999999999999753 4


Q ss_pred             c
Q 020332          262 C  262 (327)
Q Consensus       262 c  262 (327)
                      .
T Consensus        90 ~   90 (95)
T 2yt9_A           90 S   90 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.23  E-value=1.2e-11  Score=107.07  Aligned_cols=130  Identities=22%  Similarity=0.344  Sum_probs=104.0

Q ss_pred             CCccc--cccccccCChHHHhccccccccccchhhhhcCCCCccHH------HHHHHHHHHHHHh-hhc-CCCCeeec--
Q 020332            2 PGLTC--NSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEA------LFLARQAALAQEK-NKN-ATPMTYSC--   69 (327)
Q Consensus         2 ~~f~C--~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~------~F~~k~~~l~~~~-~~h-~~~~~~~C--   69 (327)
                      .+|.|  ..|++.|.+...|+.|+++  |.        +..|+.|.      .|..+ ..|..|+ +.| .+.++|.|  
T Consensus        41 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h~--------~~~~~~C~~~~C~~~f~~~-~~l~~H~~~~h~~~~~~~~C~~  109 (190)
T 1tf6_A           41 KPFPCKEEGCEKGFTSLHHLTRHSLT--HT--------GEKNFTCDSDGCDLRFTTK-ANMKKHFNRFHNIKICVYVCHF  109 (190)
T ss_dssp             CSSCCSSTTCCCCCSSHHHHHHHHTT--TT--------TCCCEECCSSSCCCEESCH-HHHHHHHHTTSSTTTSCCEECS
T ss_pred             CCccCCCCCCChhhCCHHHHHHHHHH--cc--------CCCceeCCCCCCCCccCCH-HHHHHHHHHhcCCCcceeeCCC
Confidence            57999  8899999999999999998  42        23333332      35444 5788897 567 46789999  


Q ss_pred             CCcCCcccChHHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccccccCCcchhhhh
Q 020332           70 GLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVS  149 (327)
Q Consensus        70 ~~C~K~F~s~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~e~~~~~~~~~  149 (327)
                      ..|++.|.+...|..|+++  |..                                                        
T Consensus       110 ~~C~k~f~~~~~L~~H~~~--H~~--------------------------------------------------------  131 (190)
T 1tf6_A          110 ENCGKAFKKHNQLKVHQFS--HTQ--------------------------------------------------------  131 (190)
T ss_dssp             SSSCEECSSHHHHHHHHGG--GSS--------------------------------------------------------
T ss_pred             CCCccccCCHHHHHHHHHH--hCC--------------------------------------------------------
Confidence            9999999999999999864  210                                                        


Q ss_pred             hhcccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCC--CCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhh
Q 020332          150 EATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLG  227 (327)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Clf--C~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~  227 (327)
                                                    ..|+.|.+  |++.|.+...|..||+.|+|                    
T Consensus       132 ------------------------------~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~--------------------  161 (190)
T 1tf6_A          132 ------------------------------QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--------------------  161 (190)
T ss_dssp             ------------------------------SCSSBCCSSSCCCBCSSHHHHHHHHTSSCS--------------------
T ss_pred             ------------------------------CCCccCCCCCCCchhcCHHHHHHHHHHhCC--------------------
Confidence                                          13678988  99999999999999997553                    


Q ss_pred             hhccCCccccc---cCCCCcccCCHHHHHHHHHhc
Q 020332          228 LKVKRDFMCLY---CNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       228 ~ki~~~~~Cl~---C~~~gk~F~s~~~l~~HM~~k  259 (327)
                            +.|..   |+   +.|.+...|+.||+..
T Consensus       162 ------~~C~~~~~C~---~~f~~~~~l~~H~~~h  187 (190)
T 1tf6_A          162 ------YPCKKDDSCS---FVGKTWTLYLKHVAEC  187 (190)
T ss_dssp             ------CCCCSTTTCC---CCCSCHHHHHHHHTTC
T ss_pred             ------CcCCCCCcCC---CccccHHHHHHHHHhh
Confidence                  67888   96   9999999999999853

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.23  E-value=3.7e-11  Score=94.15  Aligned_cols=52  Identities=17%  Similarity=0.305  Sum_probs=46.5

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ++.|..|++.|.+...|..||..|++                    +   .+|.|..|+   +.|.+...|+.||+.+
T Consensus        45 ~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~L~~H~~~H   96 (106)
T 2ee8_A           45 PYTCDICHKAFRRQDHLRDHRYIHSK--------------------E---KPFKCQECG---KGFCQSRTLAVHKTLH   96 (106)
T ss_dssp             CCBCSSSCCBCSCHHHHHHHGGGSCC--------------------C---CTTSCSSSC---CCCSSHHHHHHHHHHT
T ss_pred             CcCCCCccchhCCHHHHHHHHHHhCC--------------------C---CCeECCCcC---CcccCHHHHHHHHHHh
Confidence            67899999999999999999998765                    2   368999997   9999999999999865

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=9.9e-12  Score=98.28  Aligned_cols=52  Identities=19%  Similarity=0.443  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ++.|.+|++.|.+...|..||..|++                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKIHTG--------------------I---KPYECNICA---KRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTTTCC--------------------C---CCEECSSSC---CEESCHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHHcCC--------------------C---CCeeCCCCc---chhcCHHHHHHHHHHc
Confidence            57899999999999999999998765                    2   368999997   9999999999999864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.22  E-value=9.5e-12  Score=92.64  Aligned_cols=52  Identities=17%  Similarity=0.348  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      |+.|..|++.|.+...|..||..|++                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTFIHTG--------------------E---KPHKCQVCG---KAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT--------------------C---CCEECTTTS---CEESSHHHHHHHHHHH
T ss_pred             CeeCCcCChhhCCHHHHHHHHHHhcC--------------------C---CCCcCCCcc---hhhCChHHHHHHHHhh
Confidence            57899999999999999999998765                    2   379999997   9999999999999863

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.22  E-value=2.1e-11  Score=96.17  Aligned_cols=85  Identities=22%  Similarity=0.286  Sum_probs=71.7

Q ss_pred             hhhcCCCCeeecCCcCCcccChHHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCccc
Q 020332           58 KNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDE  137 (327)
Q Consensus        58 ~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e  137 (327)
                      ++.|+++++|.|.+|++.|.+...|..|++.  |..                                            
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--H~~--------------------------------------------   41 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERL--CRN--------------------------------------------   41 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHH--HHH--------------------------------------------
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHH--CCC--------------------------------------------
Confidence            3457788999999999999999999999976  211                                            


Q ss_pred             cccCCcchhhhhhhcccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCccccc
Q 020332          138 WEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLK  217 (327)
Q Consensus       138 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~  217 (327)
                                                                  ++.|..|++.|.+...|..||. |++          
T Consensus        42 --------------------------------------------~~~C~~C~~~f~~~~~l~~H~~-H~~----------   66 (107)
T 1wjp_A           42 --------------------------------------------AAVCPYCSLRFFSPELKQEHES-KCE----------   66 (107)
T ss_dssp             --------------------------------------------SBCCTTTCCCBSSHHHHHHHHH-HCS----------
T ss_pred             --------------------------------------------CccCCCCCCccCCHHHHHHHHH-cCC----------
Confidence                                                        3579999999999999999995 543          


Q ss_pred             ChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          218 DPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       218 d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                                ++   +|.|..|+   +.|.+...|+.||+..
T Consensus        67 ----------~~---~~~C~~C~---~~f~~~~~L~~H~~~~   92 (107)
T 1wjp_A           67 ----------YK---KLTCLECM---RTFKSSFSIWRHQVEV   92 (107)
T ss_dssp             ----------TG---GGEEGGGT---EECSSHHHHHHHHHHT
T ss_pred             ----------CC---CccCcccc---chhCCHHHHHHHHHHH
Confidence                      33   69999997   9999999999999843

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.20  E-value=8.4e-12  Score=94.73  Aligned_cols=52  Identities=23%  Similarity=0.627  Sum_probs=45.5

Q ss_pred             CCcccc--ccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccCh
Q 020332            2 PGLTCN--SCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSS   79 (327)
Q Consensus         2 ~~f~C~--~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~   79 (327)
                      .+|.|.  .|++.|.+...|+.|+++  |                                 .++++|.|.+|++.|.+.
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~   47 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRI--H---------------------------------TGQKPFQCRICMRNFSRS   47 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHH--H---------------------------------HCCCCEECTTTCCEESCH
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHH--h---------------------------------CCCCCccCCCCCcccCCH
Confidence            589998  699999999999999987  4                                 145689999999999999


Q ss_pred             HHHHHHHhh
Q 020332           80 KALAQHLNS   88 (327)
Q Consensus        80 ~~l~~Hl~s   88 (327)
                      ..|..|++.
T Consensus        48 ~~l~~H~~~   56 (90)
T 1a1h_A           48 DHLTTHIRT   56 (90)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.18  E-value=2.2e-11  Score=92.39  Aligned_cols=52  Identities=19%  Similarity=0.476  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ++.|..|++.|.+...|..||..|++                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~H   85 (90)
T 1a1h_A           34 PFQCRICMRNFSRSDHLTTHIRTHTG--------------------E---KPFACDICG---RKFARSDERKRHTKIH   85 (90)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHC--------------------C---CCEECTTTC---CEESSHHHHHHHHGGG
T ss_pred             CccCCCCCcccCCHHHHHHHHHHcCC--------------------C---CCccCCCCC---chhCCHHHHHHHHHHh
Confidence            57899999999999999999998765                    2   378999997   9999999999999853

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.18  E-value=1.7e-11  Score=98.16  Aligned_cols=55  Identities=18%  Similarity=0.446  Sum_probs=47.3

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|++.. |                               .+.++++|.|.+|++.|.+...
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~~-~-------------------------------~~~~~~~~~C~~C~~~f~~~~~   81 (124)
T 2dlq_A           34 KPFECPKCGKCYFRKENLLEHEARN-C-------------------------------MNRSEQVFTCSVCQETFRRRME   81 (124)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHC-C-------------------------------CCSCCCCEECSSSCCEESSHHH
T ss_pred             CCeECCCCCchhcCHHHHHHHHhhh-h-------------------------------cCCCCCCeECCCCCCccCCHHH
Confidence            5799999999999999999999873 1                               1235678999999999999999


Q ss_pred             HHHHHhh
Q 020332           82 LAQHLNS   88 (327)
Q Consensus        82 l~~Hl~s   88 (327)
                      |..|++.
T Consensus        82 l~~H~~~   88 (124)
T 2dlq_A           82 LRLHMVS   88 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.17  E-value=5.2e-12  Score=105.49  Aligned_cols=75  Identities=19%  Similarity=0.311  Sum_probs=58.7

Q ss_pred             CCccccc-----cccccCChHHHhccccccccccchhhhhcCCCCccHH------HHHHHHHHHHHHhhhcCCCCeeecC
Q 020332            2 PGLTCNS-----CNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEA------LFLARQAALAQEKNKNATPMTYSCG   70 (327)
Q Consensus         2 ~~f~C~~-----C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~------~F~~k~~~l~~~~~~h~~~~~~~C~   70 (327)
                      .+|.|..     |++.|.+...|+.|+++  |.        +..|+.|.      .|..+ ..|..|++.|.++++|.|+
T Consensus        33 ~~~~C~~c~C~~c~~~f~~~~~l~~H~~~--h~--------~~~~~~C~~~~C~~~f~~~-~~l~~H~~~h~~~~~~~C~  101 (155)
T 2gli_A           33 KEFVCHWGGCSRELRPFKAQYMLVVHMRR--HT--------GEKPHKCTFEGCRKSYSRL-ENLKTHLRSHTGEKPYMCE  101 (155)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHH--HH--------CCCCCCCCSTTCCCCCSSH-HHHHHHHHHTTTCCCEECC
T ss_pred             cceeCCCCCccchhhhhhhHHHHHHHHHh--cC--------CCCCccCCCCCCCCcccCH-HHHHHHHHHcCCCCCeeCC
Confidence            3577664     45999999999999998  42        33344332      35544 5788999999999999999


Q ss_pred             C--cCCcccChHHHHHHHh
Q 020332           71 L--CGKGYRSSKALAQHLN   87 (327)
Q Consensus        71 ~--C~K~F~s~~~l~~Hl~   87 (327)
                      +  |++.|.+...|..|++
T Consensus       102 ~~~C~~~f~~~~~L~~H~~  120 (155)
T 2gli_A          102 HEGCSKAFSNASDRAKHQN  120 (155)
T ss_dssp             STTCCCEESSSSTTHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHH
Confidence            9  9999999999999984

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.15  E-value=1.1e-11  Score=89.69  Aligned_cols=54  Identities=26%  Similarity=0.548  Sum_probs=49.2

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .||.|..|+++|.....|+.|+++  |                                 +++++|.|.+|||.|.....
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~--H---------------------------------t~ekp~~C~~C~k~F~~~~~   47 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRA--H---------------------------------LGYRPRSCPECGKCFRDQSE   47 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH--H---------------------------------HTCCCEECTTTCCEESSHHH
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHH--h---------------------------------CCCcCeECCCCCCCcCCHHH
Confidence            589999999999999999999987  4                                 37789999999999999999


Q ss_pred             HHHHHhhhh
Q 020332           82 LAQHLNSRS   90 (327)
Q Consensus        82 l~~Hl~skk   90 (327)
                      |..|++++.
T Consensus        48 L~~H~~~Ht   56 (60)
T 4gzn_C           48 VNRHLKVHQ   56 (60)
T ss_dssp             HHHHGGGGS
T ss_pred             HHHHhCccC
Confidence            999998754

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.13  E-value=1.8e-11  Score=96.82  Aligned_cols=50  Identities=26%  Similarity=0.695  Sum_probs=42.3

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.| .|++.|.+...|+.|++.  |                                 .++++|.|.+|++.|.+...
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   52 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMSM--H---------------------------------LGLRPYGCGVCGKKFKMKHH   52 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHH--H---------------------------------SCCCSEECTTTSCEESSSHH
T ss_pred             CCEec-cCCCccCCHHHHHHHHHH--c---------------------------------CCCcCccCCCCCcccCCHHH
Confidence            57999 899999999999999987  4                                 13467888888888888888


Q ss_pred             HHHHHh
Q 020332           82 LAQHLN   87 (327)
Q Consensus        82 l~~Hl~   87 (327)
                      |..|++
T Consensus        53 l~~H~~   58 (110)
T 2csh_A           53 LVGHMK   58 (110)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            888875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.07  E-value=1.4e-10  Score=93.21  Aligned_cols=52  Identities=23%  Similarity=0.526  Sum_probs=45.9

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCC--cCCcccCh
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGL--CGKGYRSS   79 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~--C~K~F~s~   79 (327)
                      .+|.|..|++.|.+...|+.|+++  |                                 .++++|.|.+  |++.|.+.
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~~~C~~~f~~~   77 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQLV--H---------------------------------TGEKPFQCTFEGCGKRFSLD   77 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGG--T---------------------------------SCCCCEECCSTTCCCEESCH
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH--c---------------------------------CCCCCeeCCCCCCcCccCCH
Confidence            479999999999999999999987  4                                 2457899986  99999999


Q ss_pred             HHHHHHHhh
Q 020332           80 KALAQHLNS   88 (327)
Q Consensus        80 ~~l~~Hl~s   88 (327)
                      ..|..|++.
T Consensus        78 ~~l~~H~~~   86 (124)
T 1ubd_C           78 FNLRTHVRI   86 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.06  E-value=1.8e-11  Score=93.39  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      |+.|..|++.|.+...|..||..+|+                        .++.|..|+   +.|.+...|+.||+..
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h~~------------------------~~~~c~~C~---~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQHI------------------------LPILEDKVE---ELLSKNYHLENEVARL   81 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTH------------------------HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhCC------------------------CcchHHHHH---HHHHHHhhhHHHHHHH
Confidence            67899999999999999999998774                        157899996   9999999999999854

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.05  E-value=1.8e-10  Score=88.96  Aligned_cols=52  Identities=21%  Similarity=0.503  Sum_probs=44.2

Q ss_pred             CCccccc--cccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecC--CcCCccc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCG--LCGKGYR   77 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~--~C~K~F~   77 (327)
                      .+|.|..  |++.|.+...|+.|+++  |                                 .++++|.|.  .|++.|.
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~~~C~~~f~   58 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRT--H---------------------------------TGEKPYKCTWEGCDWRFA   58 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHH--H---------------------------------SCCCCEECCSSSCCCEES
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHH--h---------------------------------CCCCCeeCCCCCCCCccC
Confidence            4689996  99999999999999987  4                                 145689996  6999999


Q ss_pred             ChHHHHHHHhh
Q 020332           78 SSKALAQHLNS   88 (327)
Q Consensus        78 s~~~l~~Hl~s   88 (327)
                      +...|..|++.
T Consensus        59 ~~~~l~~H~~~   69 (100)
T 2ebt_A           59 RSDELTRHYRK   69 (100)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.03  E-value=2.1e-10  Score=86.74  Aligned_cols=52  Identities=25%  Similarity=0.618  Sum_probs=44.1

Q ss_pred             CCccccc--cccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecC--CcCCccc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCG--LCGKGYR   77 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~--~C~K~F~   77 (327)
                      .+|.|..  |++.|.+...|+.|+++  |                                 .++++|.|.  .|++.|.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~~~C~~~f~   48 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRT--H---------------------------------TGEKPYHCDWDGCGWKFA   48 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTT--S---------------------------------CSSCCEECCSTTTCCEES
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHh--c---------------------------------CCCCCcCCCCCCCCCccC
Confidence            5799999  99999999999999987  4                                 145688997  5999999


Q ss_pred             ChHHHHHHHhh
Q 020332           78 SSKALAQHLNS   88 (327)
Q Consensus        78 s~~~l~~Hl~s   88 (327)
                      +...|..|++.
T Consensus        49 ~~~~l~~H~~~   59 (89)
T 2wbs_A           49 RSDELTRHYRK   59 (89)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999853

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.01  E-value=2.6e-10  Score=95.38  Aligned_cols=50  Identities=22%  Similarity=0.456  Sum_probs=44.5

Q ss_pred             ccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCC--cCCcccChHH
Q 020332            4 LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGL--CGKGYRSSKA   81 (327)
Q Consensus         4 f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~--C~K~F~s~~~   81 (327)
                      |.|..|++.|.+...|+.|+++  |                                 .++++|.|.+  |++.|.+...
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~~~C~~~f~~~~~  107 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRV--H---------------------------------TGEKPFPCPFPGCGKIFARSEN  107 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHH--H---------------------------------HCCCSEECSCTTTCCEESCHHH
T ss_pred             cCCCCcccccCCHHHHHHHHHh--c---------------------------------CCCCcccCCcCCCCCccCCHHH
Confidence            8999999999999999999987  4                                 1457899998  9999999999


Q ss_pred             HHHHHhh
Q 020332           82 LAQHLNS   88 (327)
Q Consensus        82 l~~Hl~s   88 (327)
                      |..|++.
T Consensus       108 L~~H~~~  114 (155)
T 2rpc_A          108 LKIHKRT  114 (155)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9999863

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.00  E-value=5.1e-10  Score=86.35  Aligned_cols=52  Identities=27%  Similarity=0.523  Sum_probs=45.1

Q ss_pred             CCCCC--CCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCF--MCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~Cl--fC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ++.|.  .|++.|.+...|..||..|++                    +   .+|.|..|+   +.|.+...|+.||+.+
T Consensus        45 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           45 PYKCTWEGCDWRFARSDELTRHYRKHTG--------------------A---KPFQCGVCN---RSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHTS--------------------C---CSCBCSSSC---CBCSSHHHHHHHHHHH
T ss_pred             CeeCCCCCCCCccCCHHHHHHHHHHhCC--------------------C---CCeECCCCc---CccCCHHHHHHHHHHh
Confidence            56786  599999999999999998765                    2   379999997   9999999999999863

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.00  E-value=4.1e-10  Score=89.53  Aligned_cols=52  Identities=19%  Similarity=0.491  Sum_probs=45.5

Q ss_pred             CCCCC--CCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          182 PACCF--MCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       182 p~~Cl--fC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      |+.|.  .|++.|.+...|..||..|++                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~h   89 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRRHTG--------------------V---KPFQCKTCQ---RKFSRSDHLKTHTRTH   89 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHC--------------------C---CCEECTTTC---CEESCHHHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHcCC--------------------C---CCccCCccC---chhCCHHHHHHHHHHh
Confidence            56798  699999999999999998765                    2   378999997   9999999999999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.00  E-value=1.3e-11  Score=94.10  Aligned_cols=53  Identities=23%  Similarity=0.617  Sum_probs=46.9

Q ss_pred             CCCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChH
Q 020332            1 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSK   80 (327)
Q Consensus         1 ~~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~   80 (327)
                      +.||.|..|++.|.+...|+.|+++  |                                 .++++|.|.+|++.|.+..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~--H---------------------------------~~~~~~~C~~C~k~f~~~~   45 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRT--H---------------------------------TGEKPFACDICGRKFARSD   45 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--H---------------------------------HCCCCEECTTTCCEESSHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH--c---------------------------------CCCCCccCCCCCCccCCHH
Confidence            3689999999999999999999987  4                                 1457899999999999999


Q ss_pred             HHHHHHhh
Q 020332           81 ALAQHLNS   88 (327)
Q Consensus        81 ~l~~Hl~s   88 (327)
                      .|..|++.
T Consensus        46 ~L~~H~~~   53 (88)
T 1llm_C           46 ERKRHRDI   53 (88)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.00  E-value=2.8e-10  Score=85.95  Aligned_cols=51  Identities=25%  Similarity=0.522  Sum_probs=44.6

Q ss_pred             CCCCCC--CCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHh
Q 020332          182 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       182 p~~Clf--C~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      ++.|.+  |++.|.+...|..||..|+|                    +   .+|.|..|+   +.|.+...|+.||+.
T Consensus        35 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           35 PYHCDWDGCGWKFARSDELTRHYRKHTG--------------------H---RPFQCQKCD---RAFSRSDHLALHMKR   87 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHHHC--------------------C---CCEECSSSS---CEESSHHHHHHHGGG
T ss_pred             CcCCCCCCCCCccCCHHHHHHHHHHcCC--------------------C---CCccCCCCC---cccCCHHHHHHHHHh
Confidence            578974  99999999999999988665                    2   378999997   999999999999985

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.95  E-value=3.4e-10  Score=78.74  Aligned_cols=55  Identities=22%  Similarity=0.570  Sum_probs=48.8

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      ||.|..|++.|.+...|+.|+++  |                                 +++++|.|.+|++.|.+...|
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~l   45 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT--H---------------------------------TDVRPYHCTYCNFSFKTKGNL   45 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--T---------------------------------SSCCCEECSSSSCEESSHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh--c---------------------------------CCCCCccCCCCCchhcCHHHH
Confidence            69999999999999999999887  4                                 256789999999999999999


Q ss_pred             HHHHhhhhhh
Q 020332           83 AQHLNSRSHI   92 (327)
Q Consensus        83 ~~Hl~skkHk   92 (327)
                      ..|++++.+.
T Consensus        46 ~~H~~~h~~~   55 (57)
T 1bbo_A           46 TKHMKSKAHS   55 (57)
T ss_dssp             HHHHHSSSSC
T ss_pred             HHHHHHhccc
Confidence            9999876553

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=9.7e-11  Score=93.23  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=27.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      |++.|+++++|.|.+|++.|.+...|..|++.
T Consensus        10 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             CCCCCCCCCSEEBSSSSCEESSHHHHHHHHHH
T ss_pred             heeeeCCCCCEECCccCchhcCHHHHHHHHHH
Confidence            44455678899999999999999999999986

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.93  E-value=4.8e-10  Score=83.66  Aligned_cols=51  Identities=25%  Similarity=0.595  Sum_probs=44.9

Q ss_pred             Cccc--cccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCC--cCCcccC
Q 020332            3 GLTC--NSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGL--CGKGYRS   78 (327)
Q Consensus         3 ~f~C--~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~--C~K~F~s   78 (327)
                      ||.|  ..|++.|.+...|+.|+++  |                                 .++++|.|.+  |++.|.+
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~~~C~~~f~~   45 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFS--H---------------------------------TQQLPYECPHEGCDKRFSL   45 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH--H---------------------------------HTTCCEECCSTTCCCEESS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHH--h---------------------------------CCCCCeeCCCCCCcCccCC
Confidence            6899  9999999999999999987  4                                 1457899988  9999999


Q ss_pred             hHHHHHHHhh
Q 020332           79 SKALAQHLNS   88 (327)
Q Consensus        79 ~~~l~~Hl~s   88 (327)
                      ...|..|++.
T Consensus        46 ~~~l~~H~~~   55 (85)
T 2j7j_A           46 PSRLKRHEKV   55 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.90  E-value=1.6e-09  Score=80.74  Aligned_cols=49  Identities=20%  Similarity=0.286  Sum_probs=43.3

Q ss_pred             CCCCCC--CCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccc---cCCCCcccCCHHHHHHHH
Q 020332          182 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY---CNDRCHPFNSLEAVRKHM  256 (327)
Q Consensus       182 p~~Clf--C~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~---C~~~gk~F~s~~~l~~HM  256 (327)
                      |+.|..  |++.|.+...|..||+.|+|                          +.|..   |+   +.|.+...|+.||
T Consensus        31 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------------~~C~~~~~C~---~~f~~~~~l~~H~   81 (85)
T 2j7j_A           31 PYECPHEGCDKRFSLPSRLKRHEKVHAG--------------------------YPCKKDDSCS---FVGKTWTLYLKHV   81 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHS--------------------------EECCSCSSCC---CEESSHHHHHHHH
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCC--------------------------CCCCCCCCCC---CccCCHHHHHHHH
Confidence            578988  99999999999999987653                          68988   96   9999999999999


Q ss_pred             Hhc
Q 020332          257 EAK  259 (327)
Q Consensus       257 ~~k  259 (327)
                      +..
T Consensus        82 ~~h   84 (85)
T 2j7j_A           82 AEC   84 (85)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            864

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.90  E-value=4.1e-10  Score=83.50  Aligned_cols=71  Identities=20%  Similarity=0.379  Sum_probs=57.5

Q ss_pred             HHhhhcCCCCeeecCCcCCcccChHHHHHHHhhhhhhhhhccCCChhhhhhhhccCCCCcCCCCCCCccccCCCCCCCCc
Q 020332           56 QEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSD  135 (327)
Q Consensus        56 ~~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  135 (327)
                      .|+++|+++++|.|.+|++.|.+...|..|++.. |..                                          
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~-h~~------------------------------------------   41 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQK-HTE------------------------------------------   41 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHH-SSS------------------------------------------
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHh-cCC------------------------------------------
Confidence            4566778899999999999999999999998631 100                                          


Q ss_pred             cccccCCcchhhhhhhcccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhhhhcccCCCCC
Q 020332          136 DEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPD  212 (327)
Q Consensus       136 ~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~  212 (327)
                                                                 ...++.|..|++.|.+...|..||+.+|+..-|.
T Consensus        42 -------------------------------------------~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A           42 -------------------------------------------NVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             -------------------------------------------SCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             -------------------------------------------CCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence                                                       0136889999999999999999999999865553

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.89  E-value=9.1e-10  Score=82.59  Aligned_cols=34  Identities=21%  Similarity=0.524  Sum_probs=29.5

Q ss_pred             HHHhhhcCCCCeeecCCcCCcccChHHHHHHHhh
Q 020332           55 AQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        55 ~~~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      ..|+++|+++++|.|.+|++.|.+...|..|++.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~   37 (86)
T 1x6h_A            4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR   37 (86)
T ss_dssp             TCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             ccccceecCCCCCcCCCCCCccCCHHHHHHHHHH
Confidence            3466677788999999999999999999999864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.87  E-value=4.3e-10  Score=88.55  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++  |.-.+++.+.+.      .|... ..|..|+. |+++++|.|.+|++.|.+...
T Consensus        15 ~~~~C~~C~~~f~~~~~l~~H~~~--H~~~~~C~~C~~------~f~~~-~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A           15 EVYQCRLCNAKLSSLLEQGSHERL--CRNAAVCPYCSL------RFFSP-ELKQEHES-KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH--HHHSBCCTTTCC------CBSSH-HHHHHHHH-HCSTGGGEEGGGTEECSSHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH--CCCCccCCCCCC------ccCCH-HHHHHHHH-cCCCCCccCccccchhCCHHH
Confidence            579999999999999999999998  643344444443      34433 56788885 889999999999999999999


Q ss_pred             HHHHHhh
Q 020332           82 LAQHLNS   88 (327)
Q Consensus        82 l~~Hl~s   88 (327)
                      |..|++.
T Consensus        85 L~~H~~~   91 (107)
T 1wjp_A           85 IWRHQVE   91 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999973

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.84  E-value=1.3e-09  Score=75.74  Aligned_cols=53  Identities=21%  Similarity=0.517  Sum_probs=46.3

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++  |                                 +++++|.|.+|++.|.+...
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   47 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRT--H---------------------------------TGEKPYKCEFCEYAAAQKTS   47 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHH--H---------------------------------HCCCCEECSSSSCEESSHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHHH--c---------------------------------CCCCCcCCCCCcchhCCHHH
Confidence            589999999999999999999987  4                                 15678999999999999999


Q ss_pred             HHHHHhhh
Q 020332           82 LAQHLNSR   89 (327)
Q Consensus        82 l~~Hl~sk   89 (327)
                      |..|++..
T Consensus        48 l~~H~~~h   55 (57)
T 3uk3_C           48 LRYHLERH   55 (57)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999864

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.84  E-value=1.6e-09  Score=83.58  Aligned_cols=52  Identities=23%  Similarity=0.519  Sum_probs=46.9

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++  |                                 +++++|.|.+|+|.|.+...
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~--H---------------------------------~~~k~~~C~~C~k~F~~~~~   71 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRL--L---------------------------------HAAQVFPCKYCPATFYSSPG   71 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHT--T---------------------------------SCSSSEECTTSSCEESSHHH
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhh--c---------------------------------cCCCccCCCCCCCEeCCHHH
Confidence            468999999999999999999988  4                                 26789999999999999999


Q ss_pred             HHHHHhh
Q 020332           82 LAQHLNS   88 (327)
Q Consensus        82 l~~Hl~s   88 (327)
                      |.+|++.
T Consensus        72 L~~H~~~   78 (85)
T 2lv2_A           72 LTRHINK   78 (85)
T ss_dssp             HHHHHHT
T ss_pred             HHHhCcc
Confidence            9999864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.82  E-value=7.6e-10  Score=91.79  Aligned_cols=90  Identities=19%  Similarity=0.347  Sum_probs=66.7

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCC---CccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccC
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVP---GVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRS   78 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lp---pv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s   78 (327)
                      .++.|..|++.|.+...+..|+++.+|+.|+++...+..   |+....|.     ...+...+.....|.|.+|++.|.+
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~C~~C~~~f~s  105 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFK-----AAPAEISDGEDRSKCCPVCNMTFSS  105 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCS-----CCSSCCSSCCCTTTEETTTTEECSS
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccC-----CCccccccCCCCCeEcCCCCCEeCC
Confidence            467899999999999999999999999999987765321   10000000     0001112345678999999999999


Q ss_pred             hHHHHHHHhhhhhhhhhc
Q 020332           79 SKALAQHLNSRSHIMRAS   96 (327)
Q Consensus        79 ~~~l~~Hl~skkHk~~~~   96 (327)
                      ...+.+|+++|+|+.+..
T Consensus       106 ~~~~~~H~~gk~H~~~~~  123 (127)
T 1zu1_A          106 PVVAESHYIGKTHIKNLR  123 (127)
T ss_dssp             HHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHH
Confidence            999999999999998654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.2e-09  Score=82.79  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=29.5

Q ss_pred             HHHhhhcCCCCeeecCCcCCccc-ChHHHHHHHhh
Q 020332           55 AQEKNKNATPMTYSCGLCGKGYR-SSKALAQHLNS   88 (327)
Q Consensus        55 ~~~~~~h~~~~~~~C~~C~K~F~-s~~~l~~Hl~s   88 (327)
                      ..|++.|.++++|.|.+|+|.|. +...|..|++.
T Consensus        13 ~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~   47 (98)
T 2gqj_A           13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEV   47 (98)
T ss_dssp             SHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHH
T ss_pred             HHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHH
Confidence            34566677889999999999999 99999999975

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.79  E-value=2.6e-09  Score=78.49  Aligned_cols=54  Identities=22%  Similarity=0.530  Sum_probs=47.9

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.....|+.|+++  |                                 +++++|.|.+|++.|.+...
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~--H---------------------------------~~~~~~~C~~C~k~f~~~~~   60 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTV--H---------------------------------TGEKPYRCNICGAQFNRPAN   60 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHH--H---------------------------------CCCCSEECTTTCCEESCHHH
T ss_pred             CCeECCCCCceeCCHHHHHHHHHH--c---------------------------------CCCCCEECCCCCchhCCHHH
Confidence            579999999999999999999887  4                                 25578999999999999999


Q ss_pred             HHHHHhhhh
Q 020332           82 LAQHLNSRS   90 (327)
Q Consensus        82 l~~Hl~skk   90 (327)
                      |..|++++.
T Consensus        61 L~~H~~~H~   69 (74)
T 2lce_A           61 LKTHTRIHS   69 (74)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999997643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.79  E-value=2.2e-09  Score=76.85  Aligned_cols=56  Identities=20%  Similarity=0.485  Sum_probs=48.3

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.+...|+.|+++. |.                                +++++|.|++|++.|.+...
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~-H~--------------------------------~~~~~~~C~~C~k~f~~~~~   55 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTS-HK--------------------------------RNVKVYPCPFCFKEFTRKDN   55 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHH-SS--------------------------------SSCCCEECTTTCCEESCHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHHHH-cC--------------------------------CCCcCeECCCCCCccCCHHH
Confidence            5799999999999999999998872 20                                25679999999999999999


Q ss_pred             HHHHHhhhh
Q 020332           82 LAQHLNSRS   90 (327)
Q Consensus        82 l~~Hl~skk   90 (327)
                      |..|++...
T Consensus        56 L~~H~~~~H   64 (66)
T 2drp_A           56 MTAHVKIIH   64 (66)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999998753

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.79  E-value=3.7e-09  Score=74.23  Aligned_cols=51  Identities=31%  Similarity=0.785  Sum_probs=46.0

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .||.|..|++.|.+...|+.|+++  |                                 +++++|.|.+|++.|.+...
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   45 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS--H---------------------------------TNEKPYPCGLCNRAFTRRDL   45 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--T---------------------------------TSSCSEECTTTCCEESSHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH--h---------------------------------CCCCCccCCCCCCccCCHHH
Confidence            479999999999999999999987  4                                 25578999999999999999


Q ss_pred             HHHHHh
Q 020332           82 LAQHLN   87 (327)
Q Consensus        82 l~~Hl~   87 (327)
                      |..|++
T Consensus        46 l~~H~~   51 (60)
T 2adr_A           46 LIRHAQ   51 (60)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.78  E-value=2.5e-09  Score=76.62  Aligned_cols=29  Identities=21%  Similarity=0.533  Sum_probs=26.5

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      +|+++++|.|+.|++.|.+...|..|++.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   32 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVT   32 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHH
Confidence            57788999999999999999999999865

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.78  E-value=3.8e-09  Score=76.77  Aligned_cols=54  Identities=19%  Similarity=0.471  Sum_probs=48.2

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.....|+.|+++  |                                 +++++|.|.+|++.|.+...
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~--H---------------------------------~~~~~~~C~~C~~~f~~~~~   52 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERI--H---------------------------------CTDRPFKCNYCSFDTKQPSN   52 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG--G---------------------------------CCSCSEECSSSSCEESSHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH--c---------------------------------CCCCCEeCCCCCCccCCHHH
Confidence            579999999999999999999988  4                                 25578999999999999999


Q ss_pred             HHHHHhhhh
Q 020332           82 LAQHLNSRS   90 (327)
Q Consensus        82 l~~Hl~skk   90 (327)
                      |..|++...
T Consensus        53 L~~H~~~h~   61 (70)
T 1x5w_A           53 LSKHMKKFH   61 (70)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998644

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.77  E-value=2.7e-09  Score=76.93  Aligned_cols=52  Identities=19%  Similarity=0.386  Sum_probs=46.9

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHh
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      .|+.|..||+.|.+...|..||++|-|                    ++   +|.|..|+   +.|.....|+.||+.
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~--------------------ek---p~~C~~C~---k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRAHLG--------------------YR---PRSCPECG---KCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHT--------------------CC---CEECTTTC---CEESSHHHHHHHGGG
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHHhCC--------------------Cc---CeECCCCC---CCcCCHHHHHHHhCc
Confidence            689999999999999999999987543                    44   89999996   999999999999985

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.77  E-value=8.2e-09  Score=71.56  Aligned_cols=54  Identities=26%  Similarity=0.546  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhcCC
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRH  261 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k~H  261 (327)
                      |+.|..|++.|.+...|..||..|++                    +   .+|.|..|+   +.|.+...|+.||+.+.+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTD--------------------V---RPYHCTYCN---FSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSS--------------------C---CCEECSSSS---CEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCC--------------------C---CCccCCCCC---chhcCHHHHHHHHHHhcc
Confidence            57899999999999999999998665                    2   379999997   999999999999997654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.76  E-value=4.3e-09  Score=76.98  Aligned_cols=53  Identities=23%  Similarity=0.505  Sum_probs=47.5

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.....|+.|+++  |                                 .++++|.|.+|++.|.+...
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   57 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRV--H---------------------------------TGEKPYKCLECGKAFSQNSG   57 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHG--G---------------------------------GCSCCEECSSSCCEESSHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHh--c---------------------------------CCCCCeECCCCCcccCCHHH
Confidence            579999999999999999999987  4                                 14579999999999999999


Q ss_pred             HHHHHhhh
Q 020332           82 LAQHLNSR   89 (327)
Q Consensus        82 l~~Hl~sk   89 (327)
                      |..|++.+
T Consensus        58 L~~H~~~H   65 (72)
T 1x6e_A           58 LINHQRIH   65 (72)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.76  E-value=7.3e-09  Score=76.55  Aligned_cols=53  Identities=30%  Similarity=0.653  Sum_probs=45.3

Q ss_pred             CCccccc--cccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCC--cCCccc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGL--CGKGYR   77 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~--C~K~F~   77 (327)
                      .+|.|..  |++.|.+...|+.|++.. |                                 +++++|.|.+  |++.|.
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~-H---------------------------------~~~~~~~C~~~~C~k~f~   51 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQ-H---------------------------------IHQKSFSCPEPACGKSFN   51 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHG-G---------------------------------GSCCCEECSCTTTCCEES
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHH-h---------------------------------CCCCCeECCCCCCcCccC
Confidence            4788987  999999999999999831 3                                 2567899999  999999


Q ss_pred             ChHHHHHHHhh
Q 020332           78 SSKALAQHLNS   88 (327)
Q Consensus        78 s~~~l~~Hl~s   88 (327)
                      +...|..|++.
T Consensus        52 ~~~~L~~H~~~   62 (79)
T 2dlk_A           52 FKKHLKEHMKL   62 (79)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999974

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.74  E-value=9e-09  Score=76.05  Aligned_cols=40  Identities=18%  Similarity=0.363  Sum_probs=34.2

Q ss_pred             CCCCCC--CCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccC
Q 020332          182 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFN  247 (327)
Q Consensus       182 p~~Clf--C~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~  247 (327)
                      ++.|..  |++.|.+...|..||+.|++                    +   .+|.|..|+   +.|.
T Consensus        38 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~--------------------~---~~~~C~~C~---k~F~   79 (79)
T 2dlk_A           38 SFSCPEPACGKSFNFKKHLKEHMKLHSD--------------------T---RDYICEFSG---PSSG   79 (79)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHHT--------------------S---CCCSCCSSS---CCCC
T ss_pred             CeECCCCCCcCccCCHHHHHHHHHHhCC--------------------C---CCeeCCCCC---CCCC
Confidence            678998  99999999999999998765                    3   379999997   8874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.72  E-value=6e-09  Score=77.13  Aligned_cols=55  Identities=20%  Similarity=0.457  Sum_probs=47.2

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCC-CCeeecCCcCCcccChH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNAT-PMTYSCGLCGKGYRSSK   80 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~-~~~~~C~~C~K~F~s~~   80 (327)
                      .+|.|..|++.|.....|+.|++.. |                                 .+ .++|.|.+|++.|.+..
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~~~-h---------------------------------~~~~~~~~C~~C~~~f~~~~   59 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHILQK-H---------------------------------TENVAKFHCPHCDTVIARKS   59 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHH-S---------------------------------SSSCSSEECSSSSCEESSHH
T ss_pred             CCeECCCcCchhCCHHHHHHHHHHh-c---------------------------------CCCCCccCCCCCCCccCCHH
Confidence            5799999999999999999998742 3                                 23 36899999999999999


Q ss_pred             HHHHHHhhhh
Q 020332           81 ALAQHLNSRS   90 (327)
Q Consensus        81 ~l~~Hl~skk   90 (327)
                      .|..|++...
T Consensus        60 ~L~~H~~~~H   69 (77)
T 2ct1_A           60 DLGVHLRKQH   69 (77)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHhC
Confidence            9999998754

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.71  E-value=1e-08  Score=75.83  Aligned_cols=53  Identities=23%  Similarity=0.596  Sum_probs=47.4

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.....|+.|+++  |                                 .++++|.|.+|++.|.+...
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~~~   61 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRT--H---------------------------------TGEKPYKCDECGKAFIQRSH   61 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT--T---------------------------------CCSCSEECSSSCCEESSHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH--c---------------------------------CCCcCeeCCCCCCccCCHHH
Confidence            579999999999999999999987  4                                 24578999999999999999


Q ss_pred             HHHHHhhh
Q 020332           82 LAQHLNSR   89 (327)
Q Consensus        82 l~~Hl~sk   89 (327)
                      |..|++.+
T Consensus        62 L~~H~~~H   69 (77)
T 2cot_A           62 LIGHHRVH   69 (77)
T ss_dssp             HHHHGGGS
T ss_pred             HHHHHHHh
Confidence            99999763

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.8e-08  Score=74.60  Aligned_cols=28  Identities=21%  Similarity=0.444  Sum_probs=26.0

Q ss_pred             cCCCCeeecCCcCCcccChHHHHHHHhh
Q 020332           61 NATPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        61 h~~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      |+++++|.|.+|++.|.+...|..|++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~   29 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRK   29 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHH
Confidence            6788999999999999999999999975

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.64  E-value=2.1e-08  Score=69.40  Aligned_cols=53  Identities=17%  Similarity=0.377  Sum_probs=46.0

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      .|+.|..|++.|.+...|..||+.|++                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~h   55 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTG--------------------E---KPYKCEFCE---YAAAQKTSLRYHLERH   55 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHC--------------------C---CCEECSSSS---CEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCC--------------------C---CCcCCCCCc---chhCCHHHHHHHHHHh
Confidence            478999999999999999999998665                    2   379999997   9999999999999864

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.61  E-value=1.4e-08  Score=79.50  Aligned_cols=51  Identities=22%  Similarity=0.445  Sum_probs=43.7

Q ss_pred             CCcccccccccc-CChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChH
Q 020332            2 PGLTCNSCNREF-NDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSK   80 (327)
Q Consensus         2 ~~f~C~~C~~~F-~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~   80 (327)
                      .+|.|..|++.| .+...|+.|+++                                   | ++++|.|.+|+|.|.+..
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~-----------------------------------h-~~k~~~C~~Cgk~F~~~~   76 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMEN-----------------------------------C-KQEMFTCHHCGKQLRSLA   76 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHH-----------------------------------H-CCCCCCCSSSCCCCSSHH
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHH-----------------------------------H-CCCCeECCCCCCeeCCHH
Confidence            468899999999 888888888776                                   3 457999999999999999


Q ss_pred             HHHHH-Hhh
Q 020332           81 ALAQH-LNS   88 (327)
Q Consensus        81 ~l~~H-l~s   88 (327)
                      .|..| ++.
T Consensus        77 ~L~~H~~~~   85 (96)
T 2ctd_A           77 GMKYHVMAN   85 (96)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhHHh
Confidence            99999 654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.61  E-value=1.9e-08  Score=81.47  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             HHHHHHhhhcCCCCeeecCCcCCcccChHHHHHHHhh
Q 020332           52 AALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        52 ~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      ..|..|+ .|+++++|.|.+|+|.|.+...|..|++.
T Consensus        61 ~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~   96 (129)
T 2wbt_A           61 SYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRY   96 (129)
T ss_dssp             HHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             HHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHH
Confidence            4556666 46778999999999999999999999975

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.5e-08  Score=74.96  Aligned_cols=57  Identities=23%  Similarity=0.600  Sum_probs=47.9

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.....|+.|+++  |.        +                      ..++++|.|.+|++.|.+...
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~--h~--------~----------------------~~~~~~~~C~~C~k~f~~~~~   53 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRK--HA--------E----------------------TVAALRFPCEFCGKRFEKPDS   53 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH--HH--------H----------------------HTTTCCEECTTTCCEESSHHH
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHH--hh--------c----------------------cCCCcccCCCCCCchhCCHHH
Confidence            589999999999999999999988  41        0                      013579999999999999999


Q ss_pred             HHHHHhhhh
Q 020332           82 LAQHLNSRS   90 (327)
Q Consensus        82 l~~Hl~skk   90 (327)
                      |..|++...
T Consensus        54 L~~H~~~~H   62 (78)
T 2d9h_A           54 VAAHRSKSH   62 (78)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHhC
Confidence            999996543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.58  E-value=7e-08  Score=70.70  Aligned_cols=54  Identities=20%  Similarity=0.357  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ..++.|..|++.|.+...|..||+.|++                    +   .+|.|..|+   +.|.+...|+.||+.+
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~--------------------~---~~~~C~~C~---k~f~~~~~L~~H~~~H   68 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTVHTG--------------------E---KPYRCNICG---AQFNRPANLKTHTRIH   68 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHHHCC--------------------C---CSEECTTTC---CEESCHHHHHHHHHHH
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHHcCC--------------------C---CCEECCCCC---chhCCHHHHHHHHHhc
Confidence            4689999999999999999999998664                    2   379999997   9999999999999864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.57  E-value=7.1e-08  Score=67.53  Aligned_cols=51  Identities=18%  Similarity=0.391  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHh
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      |+.|..|++.|.+...|..||+.|++                    +   .+|.|..|+   +.|.+...|+.||+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~~   52 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN--------------------E---KPYPCGLCN---RAFTRRDLLIRHAQK   52 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS--------------------S---CSEECTTTC---CEESSHHHHHHHHTT
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCC--------------------C---CCccCCCCC---CccCCHHHHHHHHHH
Confidence            78999999999999999999998664                    2   379999997   999999999999864

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.56  E-value=3.9e-08  Score=75.74  Aligned_cols=53  Identities=21%  Similarity=0.410  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHh
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      ..++.|..|++.|.+...|..||+.|+|                    ++   +|.|..|+   +.|.+...|+.||+.
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~--------------------~k---~~~C~~C~---k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHA--------------------AQ---VFPCKYCP---ATFYSSPGLTRHINK   78 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSC--------------------SS---SEECTTSS---CEESSHHHHHHHHHT
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccC--------------------CC---ccCCCCCC---CEeCCHHHHHHhCcc
Confidence            3578999999999999999999998776                    33   79999997   999999999999974

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.55  E-value=2.7e-08  Score=72.55  Aligned_cols=53  Identities=25%  Similarity=0.627  Sum_probs=46.4

Q ss_pred             CCcccc--ccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccCh
Q 020332            2 PGLTCN--SCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSS   79 (327)
Q Consensus         2 ~~f~C~--~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~   79 (327)
                      .+|.|.  .|++.|.....|+.|+++  |                                 .++++|.|.+|++.|.+.
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~--h---------------------------------~~~~~~~C~~C~~~f~~~   62 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRI--H---------------------------------TGQKPFQCRICMRNFSRS   62 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHH--H---------------------------------HCCCCEECTTTCCEESCH
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHh--h---------------------------------CCCCCeECCCCCchhCCH
Confidence            579997  599999999999999887  4                                 155789999999999999


Q ss_pred             HHHHHHHhhh
Q 020332           80 KALAQHLNSR   89 (327)
Q Consensus        80 ~~l~~Hl~sk   89 (327)
                      ..|..|++++
T Consensus        63 ~~l~~H~~~H   72 (73)
T 1f2i_G           63 DHLTTHIRTH   72 (73)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhc
Confidence            9999999763

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.55  E-value=2.5e-08  Score=79.47  Aligned_cols=58  Identities=24%  Similarity=0.386  Sum_probs=47.4

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .||.|..|++.|.....|+.|+++. |.        +                      .+++++|.|.+|+|.|.+...
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~-H~--------~----------------------~~~ekpf~C~~Cgk~F~~~~~   65 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSE-HP--------N----------------------VVLNSSYVCVECNFLTKRYDA   65 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHH-CS--------S----------------------CCCSCCEEETTTTEEESSTHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhh-CC--------C----------------------CCCCCCcCCCCCCcccCCHHH
Confidence            5899999999999999999998741 30        0                      025679999999999999999


Q ss_pred             HHHH-Hhhhh
Q 020332           82 LAQH-LNSRS   90 (327)
Q Consensus        82 l~~H-l~skk   90 (327)
                      |..| ++...
T Consensus        66 L~~H~~r~Ht   75 (102)
T 2ghf_A           66 LSEHNLKYHP   75 (102)
T ss_dssp             HHTHHHHTST
T ss_pred             HHHHHHHhcC
Confidence            9999 66543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.52  E-value=5.9e-08  Score=70.81  Aligned_cols=53  Identities=19%  Similarity=0.416  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      .|+.|.+|++.|.+...|..||+.|++                    +   .+|.|..|+   +.|.+...|+.||+.+
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRVHTG--------------------E---KPYKCLECG---KAFSQNSGLINHQRIH   65 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGC--------------------S---CCEECSSSC---CEESSHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHhcCC--------------------C---CCeECCCCC---cccCCHHHHHHHHHhc
Confidence            689999999999999999999998664                    2   379999997   9999999999999863

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.50  E-value=9e-08  Score=69.33  Aligned_cols=53  Identities=23%  Similarity=0.400  Sum_probs=47.4

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      .|+.|..|++.|.+...|..||+.|++                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~--------------------~---~~~~C~~C~---~~f~~~~~L~~H~~~h   60 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERIHCT--------------------D---RPFKCNYCS---FDTKQPSNLSKHMKKF   60 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGGCC--------------------S---CSEECSSSS---CEESSHHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCC--------------------C---CCEeCCCCC---CccCCHHHHHHHHHHH
Confidence            689999999999999999999998654                    2   379999997   9999999999999864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=3e-08  Score=71.38  Aligned_cols=50  Identities=24%  Similarity=0.463  Sum_probs=44.9

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecC-CcCCcccChH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCG-LCGKGYRSSK   80 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~-~C~K~F~s~~   80 (327)
                      .+|.|..|++.|. ...|+.|+++  .                                  ++++|.|. .|+|.|....
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~--~----------------------------------~~~p~~C~~~C~k~f~~~~   51 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ--C----------------------------------PRLPVACPNQCGVGTVARE   51 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH--C----------------------------------SSSEEECTTCCSCCEEETT
T ss_pred             CCeeccccCCccC-HHHHHHHHHH--c----------------------------------CCcCccCCcccCcccccHH
Confidence            4799999999999 9999999875  2                                  56899999 9999999999


Q ss_pred             HHHHHHhh
Q 020332           81 ALAQHLNS   88 (327)
Q Consensus        81 ~l~~Hl~s   88 (327)
                      .|..|++.
T Consensus        52 ~L~~H~~~   59 (66)
T 2eod_A           52 DLPGHLKD   59 (66)
T ss_dssp             THHHHHHT
T ss_pred             HHHHHHHh
Confidence            99999975

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.48  E-value=1.8e-07  Score=68.93  Aligned_cols=54  Identities=15%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ..|+.|..|++.|.+...|..||+.|++                    +   .+|.|..|+   +.|.+...|+.||+.+
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~L~~H~~~H   69 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRTHTG--------------------E---KPYKCDECG---KAFIQRSHLIGHHRVH   69 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTCC--------------------S---CSEECSSSC---CEESSHHHHHHHGGGS
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHHcCC--------------------C---cCeeCCCCC---CccCCHHHHHHHHHHh
Confidence            3689999999999999999999998664                    2   379999997   9999999999999853

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=2.1e-07  Score=72.40  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCCCCC-ChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHh
Q 020332          180 FDPACCFMCDLPHD-AIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       180 ~~p~~ClfC~~~f~-s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      ..++.|..|++.|. +...|..||+.|++                   .++   +|.|..|+   +.|.+...|+.||+.
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~-------------------~~~---~~~C~~C~---k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQK-------------------LQD---ALKCQHCR---KQFKSKAGLNYHTMA   76 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHHHHHHH-------------------HHH---HHSCSSSC---CCCSCHHHHHHHHHH
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHHHHHcC-------------------CCC---CEECCCCC---CccCCHHHHHHHHHH
Confidence            35899999999999 99999999998663                   133   68999997   999999999999987


Q ss_pred             c
Q 020332          259 K  259 (327)
Q Consensus       259 k  259 (327)
                      +
T Consensus        77 h   77 (98)
T 2gqj_A           77 E   77 (98)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.43  E-value=1.2e-07  Score=70.73  Aligned_cols=58  Identities=24%  Similarity=0.651  Sum_probs=47.6

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .+|.|..|++.|.....|+.|+++. |.                              ....+++|.|.+|++.|.+...
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~~~-~~------------------------------~~~~~~~~~C~~C~~~f~~~~~   62 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFKRY-HD------------------------------PNFVPAAFVCSKCGKTFTRRNT   62 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHT-TC------------------------------SSCCCCCEECSSSCCEESCHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHh-cC------------------------------CcCCCcceECCCCCChhCCHHH
Confidence            5799999999999999999999873 21                              0002368999999999999999


Q ss_pred             HHHHHhhhh
Q 020332           82 LAQHLNSRS   90 (327)
Q Consensus        82 l~~Hl~skk   90 (327)
                      |..|++...
T Consensus        63 L~~H~~~h~   71 (86)
T 1x6h_A           63 MARHADNCA   71 (86)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHcc
Confidence            999997644

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.41  E-value=1.1e-07  Score=69.08  Aligned_cols=52  Identities=21%  Similarity=0.582  Sum_probs=45.7

Q ss_pred             CCccccc--cccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCC--cCCccc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGL--CGKGYR   77 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~--C~K~F~   77 (327)
                      .+|.|..  |++.|.....|+.|+++  |                                 +++++|.|.+  |++.|.
T Consensus        16 ~~~~C~~~~C~k~f~~~~~L~~H~~~--H---------------------------------~~~~~~~C~~~~C~k~f~   60 (72)
T 2epa_A           16 RSHICSHPGCGKTYFKSSHLKAHTRT--H---------------------------------TGEKPFSCSWKGCERRFA   60 (72)
T ss_dssp             CCEECSSTTTCCEESSHHHHHHHHHH--H---------------------------------SSSCSEECCCTTCCCEES
T ss_pred             CceeCCCCCCccccCCHHHHHHHHHh--c---------------------------------CCCCCccCCCCCCCcccC
Confidence            5799988  99999999999999887  4                                 2567999976  999999


Q ss_pred             ChHHHHHHHhh
Q 020332           78 SSKALAQHLNS   88 (327)
Q Consensus        78 s~~~l~~Hl~s   88 (327)
                      +...|..|++.
T Consensus        61 ~~~~l~~H~~~   71 (72)
T 2epa_A           61 RSDELSRHRRT   71 (72)
T ss_dssp             SHHHHHHHTTT
T ss_pred             CHHHHHhHhhc
Confidence            99999999865

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=1.1e-07  Score=65.69  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=37.0

Q ss_pred             CCccccccccccCChHHHhcccc-ccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccC
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYK-SDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRS   78 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~k-sdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s   78 (327)
                      .+|.|..|++.|.....|+.|++ +  |                                 +++++|.|.+|+|.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~--H---------------------------------~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQV--H---------------------------------TSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHT--S---------------------------------CCCCCCCSSSSCCSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHh--c---------------------------------CCCCCccCCCCCCCCCC
Confidence            57999999999999999999987 4  3                                 36689999999999986

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.37  E-value=3.4e-07  Score=71.53  Aligned_cols=58  Identities=28%  Similarity=0.547  Sum_probs=49.9

Q ss_pred             CCCCCCCCCCCC-CChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHH-HHh
Q 020332          181 DPACCFMCDLPH-DAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKH-MEA  258 (327)
Q Consensus       181 ~p~~ClfC~~~f-~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~H-M~~  258 (327)
                      .++.|..|++.| .+...|..||+.| +                    +   .+|.|..|+   |.|.+...|+.| |+.
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~h-~--------------------~---k~~~C~~Cg---k~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMENC-K--------------------Q---EMFTCHHCG---KQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHHH-C--------------------C---CCCCCSSSC---CCCSSHHHHHHHHHHH
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHHH-C--------------------C---CCeECCCCC---CeeCCHHHHHHHhHHh
Confidence            579999999999 9999999999986 6                    2   379999997   999999999999 764


Q ss_pred             cCCcccCCC
Q 020332          259 KRHCKIHFG  267 (327)
Q Consensus       259 k~Hcki~~~  267 (327)
                        |...+|-
T Consensus        86 --H~~~p~~   92 (96)
T 2ctd_A           86 --HNSLPSG   92 (96)
T ss_dssp             --TCCCSSC
T ss_pred             --cCCCCCC
Confidence              5566664

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.37  E-value=1.6e-07  Score=75.99  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             HHHHHHhhhcCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           52 AALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        52 ~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ..|..|+++|  +++|.|++|++.|.+...|..|++.+.
T Consensus        88 ~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           88 VSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             HHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             hHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            3455555555  568999999999999999999998754

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=9.3e-09  Score=74.43  Aligned_cols=26  Identities=12%  Similarity=0.045  Sum_probs=23.7

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ++.|..|++.|.+...|..||..|+|
T Consensus        39 ~~~C~~C~~~f~~~~~l~~H~~~H~~   64 (73)
T 2ctu_A           39 TPMCEKCRKDSCQEAALNKDEGNESG   64 (73)
T ss_dssp             SCCCHHHHHTCSCCCSSCCCSSCCCC
T ss_pred             CCCCCCCChhhcCHHHHHHHHHhhcC
Confidence            67899999999999999999998765

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=3.4e-07  Score=69.78  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=45.2

Q ss_pred             CccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHHH
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL   82 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~l   82 (327)
                      .|.|..|++.|.+...|+.|+++. |.        +.+|..                . ..-..|.|.+|++.|.+...|
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~-H~--------~~~~~~----------------~-~~c~~~~C~~C~k~f~~~~~L   78 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTME-HV--------GGPEQN----------------N-HVCYWEECPREGKSFKAKYKL   78 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHT-TT--------CCTTCS----------------C-CCCCCTTCSSTTCCCSSHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHh-cc--------CCCCCC----------------c-cceeccCCCCCCcccCCHHHH
Confidence            367999999999999999999873 31        111100                0 001238999999999999999


Q ss_pred             HHHHhhhh
Q 020332           83 AQHLNSRS   90 (327)
Q Consensus        83 ~~Hl~skk   90 (327)
                      ..|++++.
T Consensus        79 ~~H~~~H~   86 (95)
T 2ej4_A           79 VNHIRVHT   86 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99998643

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.25  E-value=5e-07  Score=65.63  Aligned_cols=53  Identities=21%  Similarity=0.496  Sum_probs=46.3

Q ss_pred             CCCCCCC--CCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHH
Q 020332          180 FDPACCF--MCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  257 (327)
Q Consensus       180 ~~p~~Cl--fC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~  257 (327)
                      ..++.|.  .|++.|.+...|..||+.|++                    +   .+|.|..|+   +.|.+...|+.||+
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~C~---~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIRIHTG--------------------Q---KPFQCRICM---RNFSRSDHLTTHIR   70 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHHHHHC--------------------C---CCEECTTTC---CEESCHHHHHHHHT
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHHhhCC--------------------C---CCeECCCCC---chhCCHHHHHHHHH
Confidence            4689997  599999999999999998665                    2   379999997   99999999999997


Q ss_pred             h
Q 020332          258 A  258 (327)
Q Consensus       258 ~  258 (327)
                      .
T Consensus        71 ~   71 (73)
T 1f2i_G           71 T   71 (73)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.10  E-value=1.1e-06  Score=58.91  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=33.7

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCC
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGK   74 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K   74 (327)
                      .+|.|..|++.|.....|+.|+++  |                                 +++++|.|.+|+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~--H---------------------------------~~~k~~~C~~C~k   48 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLS--H---------------------------------SGEKPYSSGPSSG   48 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG--S---------------------------------CSCCCCCSCCCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHh--c---------------------------------CCCCCccCCCCCC
Confidence            579999999999999999999987  4                                 2568999999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.10  E-value=1.5e-06  Score=62.91  Aligned_cols=53  Identities=17%  Similarity=0.404  Sum_probs=46.1

Q ss_pred             CCCCCCCC--CCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccc--cCCCCcccCCHHHHHHH
Q 020332          180 FDPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKH  255 (327)
Q Consensus       180 ~~p~~Clf--C~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~--C~~~gk~F~s~~~l~~H  255 (327)
                      ..++.|..  |++.|.+...|..||..|++                    +   .+|.|.+  |+   +.|.+...|+.|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~--------------------~---~~~~C~~~~C~---k~f~~~~~l~~H   68 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTG--------------------E---KPFSCSWKGCE---RRFARSDELSRH   68 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHSS--------------------S---CSEECCCTTCC---CEESSHHHHHHH
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcCC--------------------C---CCccCCCCCCC---cccCCHHHHHhH
Confidence            46889988  99999999999999998664                    2   3799976  97   999999999999


Q ss_pred             HHh
Q 020332          256 MEA  258 (327)
Q Consensus       256 M~~  258 (327)
                      |+.
T Consensus        69 ~~~   71 (72)
T 2epa_A           69 RRT   71 (72)
T ss_dssp             TTT
T ss_pred             hhc
Confidence            974

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.07  E-value=1.2e-06  Score=69.66  Aligned_cols=57  Identities=16%  Similarity=0.324  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHH-HHh
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKH-MEA  258 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~H-M~~  258 (327)
                      ..|+.|..|++.|.+...|..||+..|...                .++   .+|.|..|+   +.|.+...|+.| |+.
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~----------------~~e---kpf~C~~Cg---k~F~~~~~L~~H~~r~   73 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNV----------------VLN---SSYVCVECN---FLTKRYDALSEHNLKY   73 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHHHCSSC----------------CCS---CCEEETTTT---EEESSTHHHHTHHHHT
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhhCCCC----------------CCC---CCcCCCCCC---cccCCHHHHHHHHHHh
Confidence            468999999999999999999998545200                012   379999996   999999999999 664

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=7.3e-07  Score=63.92  Aligned_cols=55  Identities=15%  Similarity=0.242  Sum_probs=47.1

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCcccc-ccCCCCcccCCHHHHHHHHHh
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCL-YCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl-~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      ..|+.|.+|++.|. ...|..||+. .|                    +   .+|.|. .|+   +.|.....|+.||+.
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~-~~--------------------~---~p~~C~~~C~---k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ-CP--------------------R---LPVACPNQCG---VGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH-CS--------------------S---SEEECTTCCS---CCEEETTTHHHHHHT
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH-cC--------------------C---cCccCCcccC---cccccHHHHHHHHHh
Confidence            46899999999999 9999999987 54                    2   379999 996   999999999999984


Q ss_pred             cCCccc
Q 020332          259 KRHCKI  264 (327)
Q Consensus       259 k~Hcki  264 (327)
                        ||..
T Consensus        60 --hc~~   63 (66)
T 2eod_A           60 --SCNT   63 (66)
T ss_dssp             --TSSS
T ss_pred             --hccc
Confidence              6643

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.99  E-value=2.7e-06  Score=53.28  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|+.|+|.|.+...|..|++..
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            455678899999999999999999999998764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=8.7e-06  Score=61.79  Aligned_cols=62  Identities=11%  Similarity=-0.000  Sum_probs=46.7

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ..+.|..|++.|.+...|..||+.+|....|...+.              ..+|.|..|+   +.|.+...|+.||+.+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~--------------c~~~~C~~C~---k~f~~~~~L~~H~~~H   85 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV--------------CYWEECPREG---KSFKAKYKLVNHIRVH   85 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCC--------------CCCTTCSSTT---CCCSSHHHHHHHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccc--------------eeccCCCCCC---cccCCHHHHHHHHHhc
Confidence            346799999999999999999997564211111110              1138999997   9999999999999964

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.88  E-value=2.4e-06  Score=70.29  Aligned_cols=70  Identities=20%  Similarity=0.198  Sum_probs=35.1

Q ss_pred             cccchhhhhcCCCCccHHHHHHHHHHHHH-----HhhhcCCCCeeecCCcCCcccChHHHHHHHhhhhhhhhhcc
Q 020332           28 HRYNLKRKVAGVPGVTEALFLARQAALAQ-----EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   97 (327)
Q Consensus        28 HryNlKRkva~lppv~~~~F~~k~~~l~~-----~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~~   97 (327)
                      |....||+...+--|..+.-......+..     ....|+++++|.|..|+|.|.+.+.|..|+++|+|+.++..
T Consensus         7 ~~~~tkrr~rDlDqI~~dl~~e~~~k~~~~~~~~~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~   81 (124)
T 1zr9_A            7 HLEKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQ   81 (124)
T ss_dssp             -----------------------------CCSCSSCSSSGGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHhhcccCCCHHHHHHHHHhHHHHHhhccccccccccCCCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHH
Confidence            55556777777665544321111112221     12236789999999999999999999999999999997553

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=97.87  E-value=6.7e-06  Score=52.99  Aligned_cols=33  Identities=21%  Similarity=0.527  Sum_probs=28.9

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|++.|.+...|..|+++.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTH   33 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhc
Confidence            345678889999999999999999999999764

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.85  E-value=6.4e-06  Score=52.99  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMH   33 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            345677889999999999999999999999763

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=97.83  E-value=5.9e-06  Score=54.53  Aligned_cols=33  Identities=24%  Similarity=0.501  Sum_probs=29.5

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH   35 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHh
Confidence            556788899999999999999999999999764

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.82  E-value=8.5e-06  Score=53.65  Aligned_cols=33  Identities=21%  Similarity=0.483  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH   35 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHh
Confidence            556688899999999999999999999999864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=8.6e-06  Score=53.11  Aligned_cols=33  Identities=18%  Similarity=0.426  Sum_probs=28.9

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |++.|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH   33 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHh
Confidence            345678899999999999999999999999763

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.81  E-value=9.5e-06  Score=53.42  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhhh
Confidence            579999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.81  E-value=7e-06  Score=54.08  Aligned_cols=33  Identities=21%  Similarity=0.478  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH   35 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHc
Confidence            556678889999999999999999999999874

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.81  E-value=7.5e-06  Score=54.03  Aligned_cols=33  Identities=24%  Similarity=0.571  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|++|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH   35 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHH
Confidence            455677889999999999999999999999874

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.81  E-value=7.8e-06  Score=53.84  Aligned_cols=33  Identities=21%  Similarity=0.565  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH   35 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGG
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHh
Confidence            556678899999999999999999999999763

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.80  E-value=8e-06  Score=52.71  Aligned_cols=33  Identities=24%  Similarity=0.614  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH   34 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTT
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhc
Confidence            445678889999999999999999999998764

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.80  E-value=9.3e-06  Score=53.11  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|++.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH   35 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHh
Confidence            455678889999999999999999999999764

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.80  E-value=7.7e-06  Score=53.87  Aligned_cols=33  Identities=21%  Similarity=0.472  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH   35 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHc
Confidence            556788899999999999999999999999763

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=97.79  E-value=9e-06  Score=53.54  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH   35 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGG
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhc
Confidence            556678899999999999999999999999764

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.79  E-value=8.3e-06  Score=52.55  Aligned_cols=33  Identities=18%  Similarity=0.417  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH   34 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHH
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHc
Confidence            445678899999999999999999999999764

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.79  E-value=8.1e-06  Score=53.66  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|++|++.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH   35 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhc
Confidence            556677889999999999999999999998753

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.79  E-value=1e-05  Score=53.40  Aligned_cols=33  Identities=18%  Similarity=0.456  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH   35 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGT
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHh
Confidence            556678899999999999999999999999763

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.79  E-value=8.1e-06  Score=53.86  Aligned_cols=33  Identities=24%  Similarity=0.510  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH   35 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHc
Confidence            556678889999999999999999999999764

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.79  E-value=8e-06  Score=53.80  Aligned_cols=33  Identities=21%  Similarity=0.522  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH   35 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhc
Confidence            556788899999999999999999999999764

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.79  E-value=8.1e-06  Score=53.77  Aligned_cols=33  Identities=24%  Similarity=0.550  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH   35 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHh
Confidence            455678889999999999999999999999764

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.79  E-value=8.1e-06  Score=53.68  Aligned_cols=33  Identities=21%  Similarity=0.491  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH   35 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhc
Confidence            556678889999999999999999999999864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=97.79  E-value=1.2e-05  Score=52.93  Aligned_cols=24  Identities=21%  Similarity=0.524  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=7.9e-06  Score=53.82  Aligned_cols=33  Identities=24%  Similarity=0.523  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH   35 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhc
Confidence            556788899999999999999999999999763

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=7.6e-06  Score=53.36  Aligned_cols=33  Identities=18%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|++.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH   35 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhc
Confidence            556678899999999999999999999999764

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=8.2e-06  Score=53.64  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH   35 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHh
Confidence            556678899999999999999999999999763

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=97.78  E-value=8.8e-06  Score=53.50  Aligned_cols=24  Identities=21%  Similarity=0.523  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQRS   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGGG
T ss_pred             CceECCCCCchhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=8.3e-06  Score=53.72  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH   35 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHH
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHc
Confidence            556678889999999999999999999999764

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=8.8e-06  Score=53.50  Aligned_cols=33  Identities=21%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH   35 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGG
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHh
Confidence            556678889999999999999999999999863

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=1e-05  Score=53.39  Aligned_cols=33  Identities=24%  Similarity=0.511  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH   35 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhc
Confidence            456678899999999999999999999999764

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=9.2e-06  Score=52.78  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH   35 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTT
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhc
Confidence            556678889999999999999999999999763

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.78  E-value=9.6e-06  Score=53.39  Aligned_cols=33  Identities=21%  Similarity=0.481  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH   35 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHc
Confidence            556678889999999999999999999999763

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.77  E-value=7.5e-06  Score=53.75  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~   32 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVRS   32 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH
Confidence            589999999999999999999887

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.77  E-value=9.7e-06  Score=53.47  Aligned_cols=33  Identities=21%  Similarity=0.478  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH   35 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHh
Confidence            455678889999999999999999999999763

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.77  E-value=7.7e-06  Score=53.24  Aligned_cols=33  Identities=21%  Similarity=0.474  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH   35 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTS
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHc
Confidence            456678889999999999999999999998763

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.77  E-value=9.7e-06  Score=53.37  Aligned_cols=33  Identities=21%  Similarity=0.477  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH   35 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhh
Confidence            455678889999999999999999999999764

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.77  E-value=7.3e-06  Score=54.08  Aligned_cols=33  Identities=33%  Similarity=0.627  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH   35 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHH
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHh
Confidence            556678899999999999999999999999763

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.77  E-value=1e-05  Score=53.18  Aligned_cols=33  Identities=27%  Similarity=0.603  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH   35 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHc
Confidence            556678899999999999999999999999763

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.77  E-value=9.8e-06  Score=53.44  Aligned_cols=24  Identities=21%  Similarity=0.589  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.77  E-value=1.1e-05  Score=53.17  Aligned_cols=33  Identities=24%  Similarity=0.551  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH   35 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGG
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            556678899999999999999999999999763

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=97.77  E-value=1.1e-05  Score=51.81  Aligned_cols=33  Identities=30%  Similarity=0.591  Sum_probs=28.9

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H   34 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC   34 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhc
Confidence            345678889999999999999999999999764

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=97.77  E-value=8.6e-06  Score=53.54  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH   35 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGS
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHh
Confidence            556678899999999999999999999999763

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=97.77  E-value=9.3e-06  Score=53.55  Aligned_cols=33  Identities=24%  Similarity=0.523  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|++|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH   35 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHH
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHc
Confidence            556678899999999999999999999999763

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1.1e-05  Score=52.98  Aligned_cols=24  Identities=17%  Similarity=0.477  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHH
Confidence            579999999999999999999988

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=9.9e-06  Score=53.50  Aligned_cols=33  Identities=30%  Similarity=0.626  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++.+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH   35 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTT
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhc
Confidence            455688899999999999999999999999763

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1.3e-05  Score=52.86  Aligned_cols=33  Identities=27%  Similarity=0.552  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH   35 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGG
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhc
Confidence            455678899999999999999999999999864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1.1e-05  Score=52.47  Aligned_cols=33  Identities=18%  Similarity=0.455  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH   35 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHT
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHh
Confidence            455677889999999999999999999999764

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=9.6e-06  Score=53.30  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQRI   34 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHGG
T ss_pred             CCeECCCcChhhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1.3e-05  Score=52.80  Aligned_cols=24  Identities=17%  Similarity=0.560  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQRV   34 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHHh
Confidence            579999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=97.76  E-value=9.9e-06  Score=53.23  Aligned_cols=33  Identities=24%  Similarity=0.536  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH   35 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGG
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHh
Confidence            556688899999999999999999999998763

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1e-05  Score=53.35  Aligned_cols=34  Identities=29%  Similarity=0.589  Sum_probs=29.9

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++...
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS   36 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC
Confidence            5566788999999999999999999999998644

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1.1e-05  Score=53.09  Aligned_cols=24  Identities=21%  Similarity=0.524  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRI   34 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTT
T ss_pred             CCeECCCCCceeCCHHHHHHHHHH
Confidence            579999999999999999999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1.1e-05  Score=52.93  Aligned_cols=33  Identities=21%  Similarity=0.460  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH   35 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGT
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhc
Confidence            455678889999999999999999999999753

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1.1e-05  Score=53.08  Aligned_cols=24  Identities=17%  Similarity=0.552  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQRV   34 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.76  E-value=1e-05  Score=53.31  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHMV   34 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGGG
T ss_pred             cCccCCCccchhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1e-05  Score=53.21  Aligned_cols=33  Identities=18%  Similarity=0.382  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH   35 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHh
Confidence            456678889999999999999999999999764

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=8.6e-06  Score=53.54  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH   35 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHc
Confidence            556678899999999999999999999999763

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=9e-06  Score=53.54  Aligned_cols=24  Identities=17%  Similarity=0.423  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=1.2e-05  Score=53.02  Aligned_cols=24  Identities=17%  Similarity=0.560  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCcCCCccChhhCChHHHHHHHHH
Confidence            579999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=97.75  E-value=1.1e-05  Score=53.24  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH   35 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHH
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHc
Confidence            455678889999999999999999999999863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=1e-05  Score=53.34  Aligned_cols=33  Identities=24%  Similarity=0.441  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIH   35 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHc
Confidence            455677889999999999999999999999764

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.75  E-value=8.8e-06  Score=53.58  Aligned_cols=33  Identities=24%  Similarity=0.537  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH   35 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTT
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHh
Confidence            556678889999999999999999999999753

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=97.75  E-value=7.1e-06  Score=67.19  Aligned_cols=49  Identities=22%  Similarity=0.369  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcc-----cccChHHHHHHhhhh
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE-----YLKDPKGLLTYLGLK  229 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~-----~l~d~~gLl~yl~~k  229 (327)
                      .+..||||...|++...+++||+..|+|.+....     -+++...||+|++.+
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H~FD~~~i~~~~~LDfY~~IKLINyIR~~   67 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLK   67 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhcCCCHHHHHHhcCCCceEEEEEEEeeecc
Confidence            4789999999999999999999999999887752     247889999999876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=97.75  E-value=1.2e-05  Score=52.86  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|++|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH   35 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGG
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHc
Confidence            556678889999999999999999999999763

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=9.3e-06  Score=53.55  Aligned_cols=33  Identities=21%  Similarity=0.487  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH   35 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHh
Confidence            555677889999999999999999999999763

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.75  E-value=1.2e-05  Score=52.95  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH   35 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHc
Confidence            455688899999999999999999999999864

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.75  E-value=1.1e-05  Score=53.16  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH   35 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTT
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHh
Confidence            456678889999999999999999999999764

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1.3e-05  Score=52.77  Aligned_cols=33  Identities=18%  Similarity=0.458  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH   35 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGG
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhc
Confidence            455677889999999999999999999999764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1.1e-05  Score=53.15  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH   35 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHh
Confidence            455677889999999999999999999999764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1.2e-05  Score=52.89  Aligned_cols=33  Identities=27%  Similarity=0.584  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH   35 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            455678889999999999999999999999764

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1.2e-05  Score=52.83  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH   35 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGT
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhc
Confidence            455678899999999999999999999998763

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1.2e-05  Score=52.88  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH   35 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHH
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHh
Confidence            455677889999999999999999999999764

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=1.3e-05  Score=52.71  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|++|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH   35 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGG
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHh
Confidence            455678889999999999999999999998763

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=1.4e-05  Score=52.48  Aligned_cols=33  Identities=24%  Similarity=0.524  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|++|++.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH   35 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhc
Confidence            555677889999999999999999999999753

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.74  E-value=8.4e-06  Score=53.58  Aligned_cols=33  Identities=24%  Similarity=0.553  Sum_probs=29.4

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH   35 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTT
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhc
Confidence            556788899999999999999999999999764

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.73  E-value=7.9e-06  Score=52.54  Aligned_cols=33  Identities=21%  Similarity=0.549  Sum_probs=28.9

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|++.|.+...|..|++..
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH   34 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGT
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHh
Confidence            455678889999999999999999999998753

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.73  E-value=1.2e-05  Score=52.86  Aligned_cols=33  Identities=21%  Similarity=0.474  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH   35 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhc
Confidence            556788899999999999999999999999763

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=1.3e-05  Score=50.03  Aligned_cols=30  Identities=20%  Similarity=0.649  Sum_probs=27.4

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +|+++++|.|.+|++.|.+...|..|++..
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h   32 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTN   32 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHH
Confidence            577889999999999999999999999864

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.73  E-value=1.2e-05  Score=52.88  Aligned_cols=33  Identities=24%  Similarity=0.507  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH   35 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHH
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhc
Confidence            455678899999999999999999999999764

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.73  E-value=1.3e-05  Score=52.67  Aligned_cols=33  Identities=21%  Similarity=0.538  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH   35 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTT
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHh
Confidence            455677889999999999999999999999753

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.1e-05  Score=53.01  Aligned_cols=24  Identities=17%  Similarity=0.517  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.3e-05  Score=52.76  Aligned_cols=33  Identities=24%  Similarity=0.534  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH   35 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            556678889999999999999999999998754

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.4e-05  Score=52.63  Aligned_cols=33  Identities=18%  Similarity=0.463  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH   35 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGG
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHc
Confidence            556788899999999999999999999999763

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.1e-05  Score=53.18  Aligned_cols=24  Identities=21%  Similarity=0.499  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQRI   34 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCChHHHHHHHhh
Confidence            579999999999999999999987

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.72  E-value=1.6e-05  Score=50.07  Aligned_cols=30  Identities=17%  Similarity=0.420  Sum_probs=26.6

Q ss_pred             hhcCCCCeeecCCcCCcccChHHHHHH-Hhh
Q 020332           59 NKNATPMTYSCGLCGKGYRSSKALAQH-LNS   88 (327)
Q Consensus        59 ~~h~~~~~~~C~~C~K~F~s~~~l~~H-l~s   88 (327)
                      ++|+++++|.|..|+|.|.+...|..| ++.
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHH
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            357788999999999999999999999 654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.5e-05  Score=52.56  Aligned_cols=24  Identities=17%  Similarity=0.477  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhcccc-c
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYK-S   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~k-s   25 (327)
                      .+|.|..|++.|.....|+.|++ +
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~~   35 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWRYY   35 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHTTT
T ss_pred             CCEECCccCchhCChHHHHHHhHhh
Confidence            57999999999999999999998 6

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=97.72  E-value=1.1e-05  Score=53.19  Aligned_cols=24  Identities=25%  Similarity=0.582  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTG
T ss_pred             cCcCCCCCcchhCCHHHHHHHHHh
Confidence            579999999999999999999988

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.3e-05  Score=52.70  Aligned_cols=33  Identities=15%  Similarity=0.426  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |++.|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH   35 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTS
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh
Confidence            455678889999999999999999999999764

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.4e-05  Score=52.59  Aligned_cols=33  Identities=21%  Similarity=0.493  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH   35 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHH
Confidence            455678899999999999999999999999763

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.3e-05  Score=52.73  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH   35 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHh
Confidence            455677889999999999999999999999763

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.2e-05  Score=52.78  Aligned_cols=33  Identities=24%  Similarity=0.497  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH   35 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGG
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHc
Confidence            455678889999999999999999999999753

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.1e-05  Score=53.04  Aligned_cols=33  Identities=24%  Similarity=0.500  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH   35 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhc
Confidence            455677889999999999999999999998763

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.4e-05  Score=52.72  Aligned_cols=33  Identities=27%  Similarity=0.573  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH   35 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHh
Confidence            456688899999999999999999999999763

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.3e-05  Score=52.80  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=28.9

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH   35 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTT
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHc
Confidence            455677889999999999999999999999763

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.72  E-value=1.4e-05  Score=52.61  Aligned_cols=33  Identities=18%  Similarity=0.492  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH   35 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHT
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHc
Confidence            455677889999999999999999999998763

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.72  E-value=1.1e-05  Score=53.15  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCcCCCccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.72  E-value=1.8e-05  Score=54.32  Aligned_cols=43  Identities=16%  Similarity=0.142  Sum_probs=36.1

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhh-hcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCC
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMH-KCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNS  248 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~-~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s  248 (327)
                      ..|+.|..|++.|.+...|..||+ .|.+                    +   .+|.|..|+   +.|.+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~--------------------~---k~~~C~~C~---k~F~~   53 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTS--------------------E---RPHKCQVWV---SGPSS   53 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCC--------------------C---CCCCSSSSC---CSSCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCC--------------------C---CCccCCCCC---CCCCC
Confidence            368999999999999999999997 5443                    3   379999997   88976

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.71  E-value=1.5e-05  Score=51.95  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|++.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTH   35 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGG
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            455677889999999999999999999999764

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.71  E-value=1.2e-05  Score=52.93  Aligned_cols=33  Identities=21%  Similarity=0.510  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|+++.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH   35 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHc
Confidence            456678889999999999999999999998763

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.71  E-value=1.4e-05  Score=52.62  Aligned_cols=33  Identities=27%  Similarity=0.576  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH   35 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHh
Confidence            455678889999999999999999999999864

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=97.71  E-value=9.9e-06  Score=53.42  Aligned_cols=24  Identities=21%  Similarity=0.521  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred             CCcccCccCcccCCHHHHHHHHHH
Confidence            579999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=97.71  E-value=1.3e-05  Score=52.61  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQRV   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGG
T ss_pred             cCeECCccccccCChHHHHHHHHH
Confidence            579999999999999999999987

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=97.71  E-value=8e-06  Score=56.04  Aligned_cols=33  Identities=24%  Similarity=0.505  Sum_probs=27.9

Q ss_pred             hhhcCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           58 KNKNATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        58 ~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++.|+++++|.|.+|++.|.+...|..|++.+.
T Consensus        16 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A           16 RSRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             HHHHTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             HHhcCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            334557889999999999999999999998643

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.71  E-value=1.1e-05  Score=52.96  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH   35 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTT
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHh
Confidence            555678889999999999999999999999753

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.71  E-value=1.4e-05  Score=52.62  Aligned_cols=33  Identities=21%  Similarity=0.512  Sum_probs=28.9

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH   35 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGS
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHh
Confidence            345678889999999999999999999999763

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.70  E-value=1.5e-05  Score=52.67  Aligned_cols=33  Identities=21%  Similarity=0.454  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH   35 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHc
Confidence            455678889999999999999999999999864

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.70  E-value=1.1e-05  Score=53.03  Aligned_cols=24  Identities=17%  Similarity=0.545  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=1.5e-05  Score=52.43  Aligned_cols=33  Identities=21%  Similarity=0.499  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH   35 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHh
Confidence            455678889999999999999999999999763

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=1.2e-05  Score=52.80  Aligned_cols=24  Identities=21%  Similarity=0.548  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQRV   34 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCeECCCcCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.70  E-value=1.5e-05  Score=52.54  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHh-hh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLN-SR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~-sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++ ..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   36 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH   36 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTT
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhc
Confidence            4556788899999999999999999999998 53

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=97.69  E-value=1.4e-05  Score=52.60  Aligned_cols=24  Identities=17%  Similarity=0.513  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQRM   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.69  E-value=2.2e-05  Score=48.12  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=26.3

Q ss_pred             cCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           61 NATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        61 h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++++|.|.+|+|.|.+...|..|++..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h   30 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREV   30 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHH
Confidence            56788999999999999999999999864

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=97.69  E-value=1.8e-05  Score=52.10  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=29.2

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++.+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH   35 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            455688899999999999999999999998763

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=9.7e-06  Score=53.37  Aligned_cols=24  Identities=21%  Similarity=0.621  Sum_probs=22.2

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHHH
Confidence            579999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=1.4e-05  Score=52.53  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCeECCCCChhhCCHHHHHHHHHh
Confidence            579999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=1.6e-05  Score=52.23  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLH   35 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHh
Confidence            455678889999999999999999999999763

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=1.2e-05  Score=52.84  Aligned_cols=33  Identities=21%  Similarity=0.513  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH   35 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTS
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHh
Confidence            556678889999999999999999999999763

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=1.4e-05  Score=52.52  Aligned_cols=33  Identities=21%  Similarity=0.530  Sum_probs=29.3

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH   35 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHc
Confidence            455688899999999999999999999999863

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=1.7e-05  Score=52.30  Aligned_cols=33  Identities=27%  Similarity=0.536  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++.+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH   35 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHH
Confidence            455678889999999999999999999999864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=1.3e-05  Score=52.80  Aligned_cols=24  Identities=21%  Similarity=0.569  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQKV   34 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHh
Confidence            579999999999999999999988

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=8.9e-06  Score=53.55  Aligned_cols=33  Identities=27%  Similarity=0.582  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH   35 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGG
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            556678889999999999999999999998753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.68  E-value=2.5e-05  Score=48.05  Aligned_cols=29  Identities=17%  Similarity=0.488  Sum_probs=26.4

Q ss_pred             cCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           61 NATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        61 h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++++|.|.+|++.|.+...|..|++..
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H   30 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHc
Confidence            56789999999999999999999999764

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.68  E-value=1e-05  Score=53.32  Aligned_cols=24  Identities=17%  Similarity=0.490  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQRT   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHHH
Confidence            579999999999999999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=1.2e-05  Score=52.93  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQKI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHHH
Confidence            579999999999999999999887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=1.5e-05  Score=52.41  Aligned_cols=24  Identities=17%  Similarity=0.523  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeeCcccCcccCChHHHHHHHHH
Confidence            579999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=1.4e-05  Score=52.63  Aligned_cols=33  Identities=30%  Similarity=0.575  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|++|+|.|.+...|..|++..
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH   35 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTS
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhh
Confidence            455678889999999999999999999999763

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=1.8e-05  Score=51.59  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=29.0

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|+|.|.+...|..|++..
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALH   35 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            345677889999999999999999999999864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=1.1e-05  Score=52.66  Aligned_cols=24  Identities=17%  Similarity=0.542  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQT   32 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.67  E-value=1.6e-05  Score=52.32  Aligned_cols=24  Identities=17%  Similarity=0.609  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQRV   34 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.66  E-value=1.2e-05  Score=52.74  Aligned_cols=24  Identities=17%  Similarity=0.475  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQRT   34 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCeeCCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.66  E-value=1.1e-05  Score=53.08  Aligned_cols=24  Identities=17%  Similarity=0.499  Sum_probs=22.2

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHHH
Confidence            579999999999999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.66  E-value=1.3e-05  Score=52.69  Aligned_cols=24  Identities=21%  Similarity=0.549  Sum_probs=22.2

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQRS   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHHH
Confidence            579999999999999999999887

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.65  E-value=1e-05  Score=52.71  Aligned_cols=33  Identities=21%  Similarity=0.507  Sum_probs=29.1

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++|+++++|.|.+|++.|.+...|..|+++.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H   35 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH   35 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHH
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHh
Confidence            455677889999999999999999999999764

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.65  E-value=1.1e-05  Score=53.16  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHHH
Confidence            579999999999999999999887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.65  E-value=1.1e-05  Score=53.10  Aligned_cols=24  Identities=21%  Similarity=0.559  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQRT   34 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHHH
Confidence            579999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.64  E-value=1e-05  Score=53.26  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQKI   34 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHh
Confidence            579999999999999999999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.63  E-value=1.2e-05  Score=52.75  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHHH
Confidence            579999999999999999999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.63  E-value=1.9e-05  Score=51.97  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQKI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.63  E-value=1.4e-05  Score=52.64  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=22.1

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQVL   34 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHHH
Confidence            579999999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.62  E-value=1.1e-05  Score=53.06  Aligned_cols=24  Identities=21%  Similarity=0.555  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRRV   34 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTHH
T ss_pred             CCeECCcCCchhCCHHHHHHHHHh
Confidence            579999999999999999999887

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.60  E-value=3.4e-05  Score=48.15  Aligned_cols=30  Identities=13%  Similarity=0.345  Sum_probs=27.1

Q ss_pred             hcCCCCeeecCCcCCcccCh-HHHHHHHhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSS-KALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~-~~l~~Hl~sk   89 (327)
                      +|+++++|.|..|++.|.+. ..|..|++.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            47788999999999999999 9999999764

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.60  E-value=1.3e-05  Score=52.84  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHHH
Confidence            579999999999999999999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.60  E-value=1.3e-05  Score=52.86  Aligned_cols=24  Identities=13%  Similarity=0.486  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.59  E-value=3.5e-05  Score=47.60  Aligned_cols=30  Identities=20%  Similarity=0.390  Sum_probs=27.0

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      .|+++++|.|.+|++.|.....|..|++.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            467889999999999999999999999764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.57  E-value=3.9e-05  Score=47.52  Aligned_cols=30  Identities=13%  Similarity=0.527  Sum_probs=26.8

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      .|+++++|.|.+|++.|.....|..|++.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            366789999999999999999999999864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.57  E-value=3.9e-05  Score=47.53  Aligned_cols=30  Identities=27%  Similarity=0.575  Sum_probs=27.0

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      .|+++++|.|.+|++.|.+...|..|++.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            467889999999999999999999999764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=97.56  E-value=4.2e-05  Score=48.46  Aligned_cols=30  Identities=33%  Similarity=0.795  Sum_probs=26.0

Q ss_pred             cCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           61 NATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        61 h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      |+++++|.|.+|++.|.+...|..|+++..
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   30 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR   30 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC
Confidence            457789999999999999999999998643

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.55  E-value=6.6e-06  Score=58.48  Aligned_cols=28  Identities=11%  Similarity=0.455  Sum_probs=22.3

Q ss_pred             HHhhhcCCCCeeecCCcCCcccChHHHH
Q 020332           56 QEKNKNATPMTYSCGLCGKGYRSSKALA   83 (327)
Q Consensus        56 ~~~~~h~~~~~~~C~~C~K~F~s~~~l~   83 (327)
                      .|++.|+++++|.|+.|++.|.....|.
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~   31 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ   31 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH
Confidence            3555678889999999999998766553

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.53  E-value=4.4e-06  Score=59.42  Aligned_cols=42  Identities=17%  Similarity=0.473  Sum_probs=32.0

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .||.|..|++.|.....|+   +                                   .|+++++|.|.+|++.|.....
T Consensus        13 k~~~C~~C~k~F~~~~~l~---~-----------------------------------~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A           13 ASFKCPVCSSTFTDLEANQ---L-----------------------------------FDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHH---H-----------------------------------EETTTTEEBCSSSCCBCEECTT
T ss_pred             CCccCCCCCchhccHHHhH---h-----------------------------------hcCCCCCEECCCCCCccccCcc
Confidence            4688999999987665554   2                                   3447789999999999987654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.53  E-value=4.8e-05  Score=48.65  Aligned_cols=30  Identities=27%  Similarity=0.564  Sum_probs=27.2

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +|+++++|.|.+|+|.|.+...|..|++.+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIH   33 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHh
Confidence            577889999999999999999999998763

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.53  E-value=4.3e-05  Score=51.28  Aligned_cols=27  Identities=30%  Similarity=0.768  Sum_probs=25.6

Q ss_pred             cCCCCeeecCCcCCcccChHHHHHHHh
Q 020332           61 NATPMTYSCGLCGKGYRSSKALAQHLN   87 (327)
Q Consensus        61 h~~~~~~~C~~C~K~F~s~~~l~~Hl~   87 (327)
                      |+++++|.|.+|+|.|.....|..|++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhh
Confidence            678899999999999999999999998

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.52  E-value=5.7e-05  Score=46.57  Aligned_cols=30  Identities=27%  Similarity=0.509  Sum_probs=26.7

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      .|+++++|.|.+|+|.|.+...|..|++.+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            366789999999999999999999999764

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.51  E-value=2.4e-05  Score=51.51  Aligned_cols=24  Identities=17%  Similarity=0.553  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHHH
Confidence            579999999999999999999887

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.51  E-value=3.3e-05  Score=50.57  Aligned_cols=31  Identities=23%  Similarity=0.561  Sum_probs=27.8

Q ss_pred             hhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           59 NKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        59 ~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +.|+++++|.|.+|+|.|.+...|..|++.+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIH   35 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTT
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHh
Confidence            4578889999999999999999999999764

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.50  E-value=4.1e-05  Score=50.24  Aligned_cols=32  Identities=22%  Similarity=0.512  Sum_probs=28.2

Q ss_pred             hhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           58 KNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        58 ~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +++|+++++|.|.+|+|.|.+...|..|++.+
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH   35 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHh
Confidence            34678889999999999999999999998763

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.50  E-value=7.6e-05  Score=48.82  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=24.7

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||..|+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHERLHSG   37 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHHHCCS
T ss_pred             CCeECCCCCCccCchHHHHHHHHhcCC
Confidence            589999999999999999999998665

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.50  E-value=5.5e-05  Score=43.66  Aligned_cols=25  Identities=32%  Similarity=0.687  Sum_probs=22.8

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      +++|.|..|++.|.+...|..|++.
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHH
Confidence            3689999999999999999999975

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.49  E-value=5.1e-05  Score=49.95  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=27.8

Q ss_pred             hhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           59 NKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        59 ~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +.|+++++|.|.+|+|.|.+...|..|++.+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIH   35 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHh
Confidence            4577889999999999999999999999764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.48  E-value=6.5e-05  Score=48.73  Aligned_cols=30  Identities=17%  Similarity=0.357  Sum_probs=26.4

Q ss_pred             cCCCCeeecCC--cCCcccChHHHHHHHhhhh
Q 020332           61 NATPMTYSCGL--CGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        61 h~~~~~~~C~~--C~K~F~s~~~l~~Hl~skk   90 (327)
                      +++++||.|..  |+|.|.+...|+.|++.+.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            46889999986  9999999999999998643

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.48  E-value=4.2e-05  Score=50.94  Aligned_cols=38  Identities=11%  Similarity=0.127  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccC
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCN  240 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~  240 (327)
                      ..++.|.+|++.|.+...|..||+.|++                    +   .+|.|..|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~--------------------~---k~~~C~~C~   47 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLSHSG--------------------E---KPYSSGPSS   47 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCS--------------------C---CCCCSCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHhcCC--------------------C---CCccCCCCC
Confidence            3689999999999999999999998665                    3   379999996

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.47  E-value=8.6e-05  Score=48.55  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||..|+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKCHTG   37 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHHHSC
T ss_pred             CCccCCccChhhCCHHHHHHHHHhcCC
Confidence            589999999999999999999998665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.47  E-value=0.0001  Score=48.23  Aligned_cols=28  Identities=18%  Similarity=0.243  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|+.|..|++.|.+...|..||+.|+|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQRIHTG   37 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHTTTTT
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3589999999999999999999998654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.46  E-value=5.6e-05  Score=48.58  Aligned_cols=25  Identities=28%  Similarity=0.627  Sum_probs=23.7

Q ss_pred             CCCCeeecCCcCCcccChHHHHHHH
Q 020332           62 ATPMTYSCGLCGKGYRSSKALAQHL   86 (327)
Q Consensus        62 ~~~~~~~C~~C~K~F~s~~~l~~Hl   86 (327)
                      .++++|.|..|+|+|.+.+.|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4789999999999999999999998

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=7.4e-05  Score=48.47  Aligned_cols=31  Identities=13%  Similarity=0.300  Sum_probs=27.8

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      .|+++++|.|..|+|.|.+...|..|++.+.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTH   34 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhC
Confidence            5778899999999999999999999998643

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.45  E-value=5.2e-05  Score=49.82  Aligned_cols=32  Identities=28%  Similarity=0.579  Sum_probs=28.5

Q ss_pred             hhcCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           59 NKNATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        59 ~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++|+++++|.|.+|+|.|.+...|..|++.+.
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHT   36 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            45788899999999999999999999998743

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.45  E-value=7.6e-05  Score=46.16  Aligned_cols=29  Identities=21%  Similarity=0.552  Sum_probs=26.2

Q ss_pred             cCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           61 NATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        61 h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++++|.|.+|+|.|.....|..|++.+
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            56778999999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=97.44  E-value=0.0001  Score=48.39  Aligned_cols=28  Identities=18%  Similarity=0.288  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|+.|..|++.|.+...|..||..|.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2emk_A           10 EKPYECKECGKAFSQTTHLIQHQRVHTG   37 (46)
T ss_dssp             SCSCBCSSSCCBCSCHHHHHHHHHHHSS
T ss_pred             CCceECCCCCchhCCHHHHHHHHHHcCC
Confidence            3589999999999999999999998665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.43  E-value=0.00012  Score=48.00  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=24.7

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||..|+|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMVHTA   37 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHTTC
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHHcCC
Confidence            589999999999999999999998665

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.42  E-value=6.5e-05  Score=49.11  Aligned_cols=27  Identities=22%  Similarity=0.511  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.....|..||+.|++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~H~~   35 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVRSHDG   35 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHccC
Confidence            589999999999999999999998665

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.42  E-value=5.5e-05  Score=43.90  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=22.4

Q ss_pred             CeeecCCcCCcccChHHHHHHHhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      ++|.|..|+|.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            689999999999999999999875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.41  E-value=8.9e-05  Score=48.66  Aligned_cols=28  Identities=14%  Similarity=0.116  Sum_probs=24.9

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|+.|..|++.|.+...|..||+.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWITHTR   37 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTHHHH
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHHcCC
Confidence            3689999999999999999999998654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.40  E-value=9.8e-05  Score=48.54  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|+.|..|++.|.+...|..||+.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQRLHTG   37 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHHHHHS
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHHcCC
Confidence            3589999999999999999999998654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.37  E-value=9.1e-05  Score=42.90  Aligned_cols=25  Identities=28%  Similarity=0.725  Sum_probs=22.8

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|..|+|.|.+...|..|++.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            6899999999999999999998753

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.36  E-value=8.2e-05  Score=48.74  Aligned_cols=24  Identities=21%  Similarity=0.541  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCEECCccCcccCCHHHHHHHHHH
Confidence            579999999999999999999988

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.35  E-value=9e-05  Score=48.55  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             cCeECCCCCcccCCHHHHHHHHHh
Confidence            579999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.34  E-value=8.9e-05  Score=48.75  Aligned_cols=24  Identities=17%  Similarity=0.391  Sum_probs=22.7

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHHh
Confidence            589999999999999999999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.34  E-value=9.9e-05  Score=48.33  Aligned_cols=24  Identities=21%  Similarity=0.567  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRV   34 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.34  E-value=9.4e-05  Score=48.37  Aligned_cols=24  Identities=17%  Similarity=0.548  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHH
Confidence            579999999999999999999988

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.33  E-value=8.9e-05  Score=48.58  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTT
T ss_pred             cCeECCCCCcccCChhHHHHHhHh
Confidence            579999999999999999999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.32  E-value=8.5e-05  Score=48.57  Aligned_cols=24  Identities=21%  Similarity=0.510  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGG
T ss_pred             cCEECCCCChhhCChHHHHHHHHh
Confidence            579999999999999999999987

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.30  E-value=9e-05  Score=48.83  Aligned_cols=24  Identities=25%  Similarity=0.560  Sum_probs=22.0

Q ss_pred             CCcccc--ccccccCChHHHhccccc
Q 020332            2 PGLTCN--SCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~--~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|.  .|++.|.....|+.|+++
T Consensus        11 k~~~C~~~~C~k~f~~~~~L~~H~~~   36 (48)
T 2ent_A           11 KPFACTWPGCGWRFSRSDELSRHRRS   36 (48)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHHH
Confidence            579998  899999999999999987

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=0.00011  Score=48.13  Aligned_cols=24  Identities=17%  Similarity=0.589  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRV   34 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHh
Confidence            579999999999999999999988

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.29  E-value=0.00012  Score=48.08  Aligned_cols=24  Identities=21%  Similarity=0.609  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQRV   34 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.29  E-value=0.00014  Score=42.32  Aligned_cols=25  Identities=24%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|..|++.|.+...|..|++.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLH   25 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHh
Confidence            4799999999999999999999864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.28  E-value=0.00017  Score=45.14  Aligned_cols=29  Identities=28%  Similarity=0.496  Sum_probs=25.9

Q ss_pred             cCCCCeeecCC--cCCcccChHHHHHHHhhh
Q 020332           61 NATPMTYSCGL--CGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        61 h~~~~~~~C~~--C~K~F~s~~~l~~Hl~sk   89 (327)
                      |+++++|.|.+  |+|.|.+...|..|++.+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            56789999995  999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.27  E-value=0.00011  Score=48.13  Aligned_cols=24  Identities=21%  Similarity=0.493  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQVI   34 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHTT
T ss_pred             CCeECCcCChhhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=8.6e-05  Score=48.56  Aligned_cols=24  Identities=21%  Similarity=0.654  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQRT   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CCcCCCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.26  E-value=9e-05  Score=48.63  Aligned_cols=24  Identities=21%  Similarity=0.600  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRI   34 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.25  E-value=9.8e-05  Score=48.45  Aligned_cols=24  Identities=17%  Similarity=0.515  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCcCCcccCCHHHHHHHHHH
Confidence            579999999999999999999988

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.25  E-value=8.7e-05  Score=48.78  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRRI   34 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHHH
Confidence            579999999999999999999887

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.25  E-value=9.8e-05  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.526  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.25  E-value=8.9e-05  Score=48.08  Aligned_cols=24  Identities=29%  Similarity=0.606  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQ   32 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHHh
Confidence            579999999999999999999987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.24  E-value=0.00015  Score=47.48  Aligned_cols=24  Identities=21%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQRV   34 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH
Confidence            579999999999999999999988

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.23  E-value=0.00011  Score=48.11  Aligned_cols=24  Identities=17%  Similarity=0.527  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHhH
Confidence            579999999999999999999988

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.22  E-value=8.4e-05  Score=48.71  Aligned_cols=24  Identities=25%  Similarity=0.573  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQKT   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.22  E-value=0.00017  Score=44.01  Aligned_cols=26  Identities=23%  Similarity=0.577  Sum_probs=23.2

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++|.|.+|+|.|.+...|..|++++.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC
Confidence            47999999999999999999998643

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.31  E-value=4.9e-05  Score=43.49  Aligned_cols=24  Identities=38%  Similarity=0.773  Sum_probs=22.1

Q ss_pred             CeeecCCcCCcccChHHHHHHHhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      ++|.|..|++.|.+...|..|++.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            479999999999999999999875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.22  E-value=0.00018  Score=41.08  Aligned_cols=24  Identities=33%  Similarity=0.792  Sum_probs=21.3

Q ss_pred             eeecCCcCCcccChHHHHHHHhhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +|.|..|+|.|.+...|..|++++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHc
Confidence            589999999999999999999764

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=97.21  E-value=8e-05  Score=48.90  Aligned_cols=24  Identities=17%  Similarity=0.490  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQRI   34 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999987

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.21  E-value=0.00018  Score=41.81  Aligned_cols=25  Identities=24%  Similarity=0.776  Sum_probs=22.9

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|..|++.|.+...|..|++.+
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHh
Confidence            6899999999999999999999764

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.21  E-value=8.3e-05  Score=48.62  Aligned_cols=24  Identities=21%  Similarity=0.587  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQAT   34 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHHH
Confidence            579999999999999999999987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=0.00018  Score=45.90  Aligned_cols=24  Identities=17%  Similarity=0.573  Sum_probs=22.8

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRV   33 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHHH
Confidence            589999999999999999999998

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=97.20  E-value=0.00014  Score=49.59  Aligned_cols=45  Identities=11%  Similarity=0.178  Sum_probs=37.3

Q ss_pred             CCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHhc
Q 020332          189 DLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       189 ~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ++.|.....+..||+.|.|                    +   .+|.|..|+   +.|.+...|+.||+..
T Consensus         3 ~k~~~~~~~l~~h~~~H~~--------------------~---k~~~C~~C~---k~f~~~~~L~~H~~~H   47 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQS--------------------E---QPATCPICY---AVIRQSRNLRRHLELR   47 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTS--------------------S---CCEECTTTC---CEESSHHHHHHHHHHH
T ss_pred             ccccCCCcchhhHHHhcCC--------------------C---CCccCCCCC---cccCCHHHHHHHHHHh
Confidence            4567788888999987654                    3   379999997   9999999999999864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.20  E-value=0.00012  Score=47.86  Aligned_cols=24  Identities=17%  Similarity=0.498  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQRI   34 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHTT
T ss_pred             cCccCCCCCCccCChHHHHHHHHH
Confidence            579999999999999999999987

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.20  E-value=0.0002  Score=41.51  Aligned_cols=25  Identities=20%  Similarity=0.655  Sum_probs=22.7

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|.+|++.|.+...|..|++.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHh
Confidence            3789999999999999999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.20  E-value=9.3e-05  Score=48.56  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRRS   34 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHh
Confidence            479999999999999999999887

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.18  E-value=0.00025  Score=44.24  Aligned_cols=30  Identities=20%  Similarity=0.458  Sum_probs=26.0

Q ss_pred             cCCCCeeecC--CcCCcccChHHHHHHHhhhh
Q 020332           61 NATPMTYSCG--LCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        61 h~~~~~~~C~--~C~K~F~s~~~l~~Hl~skk   90 (327)
                      |+++++|.|.  .|+|.|.+...|..|++.+.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            4578899999  59999999999999997643

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.17  E-value=0.00012  Score=47.94  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHH
Confidence            579999999999999999999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.16  E-value=7.9e-05  Score=48.73  Aligned_cols=24  Identities=21%  Similarity=0.555  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHHh
Confidence            579999999999999999999987

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=97.16  E-value=0.00014  Score=46.53  Aligned_cols=24  Identities=21%  Similarity=0.552  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCccCCCcChhhCCHHHHHHHHHh
Confidence            579999999999999999999988

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.12  E-value=0.00018  Score=46.99  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAI   34 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTT
T ss_pred             CCeECCCCChhhCCHHHHHHHHHH
Confidence            579999999999999999999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.11  E-value=0.00018  Score=46.51  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999988

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.10  E-value=0.00026  Score=40.85  Aligned_cols=25  Identities=32%  Similarity=0.615  Sum_probs=22.7

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|..|++.|.+...|..|++.+
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHh
Confidence            4799999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.09  E-value=0.00019  Score=45.75  Aligned_cols=24  Identities=21%  Similarity=0.542  Sum_probs=22.7

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHERI   32 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHHH
Confidence            579999999999999999999988

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.07  E-value=0.00031  Score=40.04  Aligned_cols=26  Identities=12%  Similarity=0.144  Sum_probs=22.8

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.+...|..||+.|+|
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            57899999999999999999998654

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.07  E-value=0.00016  Score=46.65  Aligned_cols=24  Identities=25%  Similarity=0.677  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQRT   34 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHHH
Confidence            579999999999999999999987

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.06  E-value=0.00024  Score=46.71  Aligned_cols=32  Identities=22%  Similarity=0.467  Sum_probs=28.1

Q ss_pred             hhhcCCCCeeecC--CcCCcccChHHHHHHHhhh
Q 020332           58 KNKNATPMTYSCG--LCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        58 ~~~h~~~~~~~C~--~C~K~F~s~~~l~~Hl~sk   89 (327)
                      .++|+++++|.|.  .|+|.|.+...|..|++.+
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   37 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH   37 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTS
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHh
Confidence            3467889999998  8999999999999999763

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.05  E-value=0.0002  Score=46.38  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKT   34 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            479999999999999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.05  E-value=0.00013  Score=54.05  Aligned_cols=31  Identities=13%  Similarity=0.185  Sum_probs=23.8

Q ss_pred             HHHhhhcCCCCeeecCCcCCcccChHHHHHHH
Q 020332           55 AQEKNKNATPMTYSCGLCGKGYRSSKALAQHL   86 (327)
Q Consensus        55 ~~~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl   86 (327)
                      ..|+..|.+.+++.|..|++.|. ...|..|+
T Consensus         6 ~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~   36 (75)
T 2d9k_A            6 SGHEETECPLRLAVCQHCDLELS-ILKLKEHE   36 (75)
T ss_dssp             SCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH
T ss_pred             HhhCcccCCCcccCCcccChHhh-HHHHHHHH
Confidence            34555567788999999999994 77788887

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.04  E-value=0.00014  Score=47.67  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=22.4

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHHH
Confidence            579999999999999999999887

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.04  E-value=0.00031  Score=40.41  Aligned_cols=25  Identities=24%  Similarity=0.458  Sum_probs=22.5

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|..|++.|.....|..|++..
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHh
Confidence            4789999999999999999999764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.02  E-value=0.00034  Score=50.99  Aligned_cols=31  Identities=29%  Similarity=0.516  Sum_probs=27.4

Q ss_pred             cCCCCeeecCCcCCcccChHHHHHHHhhhhh
Q 020332           61 NATPMTYSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        61 h~~~~~~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      +..+++|.|..|+|.|.....|..|++.+..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            5678999999999999999999999987543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.01  E-value=0.00037  Score=40.41  Aligned_cols=25  Identities=28%  Similarity=0.579  Sum_probs=22.6

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|..|++.|.....|..|++.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h   25 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHH
Confidence            3789999999999999999999764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.03  E-value=0.00011  Score=42.93  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=22.8

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|..|++.|.+...|..|++.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIH   26 (30)
Confidence            5899999999999999999999764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.96  E-value=0.00044  Score=41.29  Aligned_cols=26  Identities=31%  Similarity=0.608  Sum_probs=23.4

Q ss_pred             CeeecC--CcCCcccChHHHHHHHhhhh
Q 020332           65 MTYSCG--LCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        65 ~~~~C~--~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++|.|.  .|+|.|.+...|..|++++.
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            689999  89999999999999998743

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.96  E-value=0.00017  Score=47.26  Aligned_cols=24  Identities=21%  Similarity=0.600  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHHH
Confidence            579999999999999999999988

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.01  E-value=0.00012  Score=42.72  Aligned_cols=25  Identities=24%  Similarity=0.673  Sum_probs=22.4

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|..|++.|.....|..|++.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQH   25 (29)
Confidence            3789999999999999999999754

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.95  E-value=0.00022  Score=41.19  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..|++.|.....|+.|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            589999999999999999999987

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.99  E-value=0.00013  Score=41.62  Aligned_cols=24  Identities=17%  Similarity=0.512  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..|++.|.....|+.|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            379999999999999999999987

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.93  E-value=0.00026  Score=40.89  Aligned_cols=25  Identities=24%  Similarity=0.659  Sum_probs=23.3

Q ss_pred             CCCccccccccccCChHHHhccccc
Q 020332            1 MPGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         1 ~~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      +.+|.|..|++.|.....|+.|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTT
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHh
Confidence            3689999999999999999999998

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=96.91  E-value=0.00053  Score=39.73  Aligned_cols=26  Identities=19%  Similarity=0.396  Sum_probs=24.1

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.....|..||..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcc
Confidence            68999999999999999999998776

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.91  E-value=0.00028  Score=46.78  Aligned_cols=30  Identities=20%  Similarity=0.483  Sum_probs=26.7

Q ss_pred             hcCCCCeeecC--CcCCcccChHHHHHHHhhh
Q 020332           60 KNATPMTYSCG--LCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~--~C~K~F~s~~~l~~Hl~sk   89 (327)
                      .|+++++|.|.  .|+|.|.....|..|++.+
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            47788999996  7999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.90  E-value=0.00052  Score=39.43  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=23.8

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.....|..||..|+|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            78999999999999999999998665

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.90  E-value=0.00022  Score=40.95  Aligned_cols=24  Identities=17%  Similarity=0.419  Sum_probs=22.8

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..|++.|.....|+.|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            589999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.89  E-value=0.00024  Score=46.00  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCeECcccCcccCCHHHHHHHHHH
Confidence            579999999999999999999988

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.87  E-value=0.00028  Score=45.61  Aligned_cols=24  Identities=21%  Similarity=0.505  Sum_probs=22.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..|++.|.....|+.|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHERT   34 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhHh
Confidence            579999999999999999999987

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.85  E-value=0.0008  Score=42.91  Aligned_cols=27  Identities=19%  Similarity=0.427  Sum_probs=24.7

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|+|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRIHTG   36 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTTTSC
T ss_pred             CCEECCCCCCccCCHHHHHHHHHhcCC
Confidence            589999999999999999999998665

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.85  E-value=0.0002  Score=51.02  Aligned_cols=54  Identities=13%  Similarity=0.084  Sum_probs=32.5

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHH---HHHHHHHhhhcCCCCeeecCCc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLAR---QAALAQEKNKNATPMTYSCGLC   72 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k---~~~l~~~~~~h~~~~~~~C~~C   72 (327)
                      .+|.|..|++.|.+...|+.                 ..|+.|+.....   ...|..|++.|+++++|.|++|
T Consensus        17 ~~~~C~~C~k~f~~~~~l~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           17 RSQKCSKCGIIFIRRSTLSR-----------------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SEEECSSSCCEEECCCCCCC-----------------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCeeCCcccchhCCHHHhCc-----------------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            35677777777776555554                 123334433221   1245566666778889999988

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.84  E-value=0.00092  Score=42.44  Aligned_cols=27  Identities=15%  Similarity=0.235  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||..|.|
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~   35 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKMHTV   35 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHTSC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhCC
Confidence            589999999999999999999998654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=96.84  E-value=0.00063  Score=39.22  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=23.7

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.+...|..||..|+|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            68999999999999999999998654

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.80  E-value=0.001  Score=42.64  Aligned_cols=27  Identities=19%  Similarity=0.429  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||..|+|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRTHTG   37 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTTTCC
T ss_pred             cCeECCCCCCccCCHHHHHHHhhhcCC
Confidence            589999999999999999999988655

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=96.79  E-value=0.00072  Score=41.14  Aligned_cols=26  Identities=12%  Similarity=0.075  Sum_probs=23.7

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.+...|..||..|.|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~   27 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHEL   27 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTT
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCC
Confidence            78999999999999999999997654

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=96.79  E-value=0.0007  Score=40.12  Aligned_cols=25  Identities=28%  Similarity=0.691  Sum_probs=22.5

Q ss_pred             CeeecC--CcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCG--LCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~--~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|.  .|+|.|.+...|..|++.+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H   27 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTH   27 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHh
Confidence            478998  9999999999999999764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.78  E-value=0.00059  Score=39.79  Aligned_cols=24  Identities=29%  Similarity=0.794  Sum_probs=21.1

Q ss_pred             CeeecCCcCCcccChHHHHHH-Hhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQH-LNS   88 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~H-l~s   88 (327)
                      ++|.|..|++.|.+...|..| ++.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~   25 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI   25 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH
Confidence            378999999999999999999 444

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.77  E-value=0.0011  Score=43.11  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRVHTG   37 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHCSS
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCC
Confidence            589999999999999999999998654

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.72  E-value=0.0013  Score=42.49  Aligned_cols=27  Identities=15%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|.+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQALHAG   37 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHHHTT
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHHCC
Confidence            589999999999999999999998654

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.70  E-value=0.00023  Score=52.68  Aligned_cols=26  Identities=31%  Similarity=0.486  Sum_probs=21.8

Q ss_pred             CCCCeeecCCcCCcccChHHHHHHHhh
Q 020332           62 ATPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        62 ~~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      .+++++.|..|++.|. ...|..|++.
T Consensus        39 c~~~~~~C~~C~~~~~-~~~l~~H~~~   64 (75)
T 2d9k_A           39 CGARTELCGNCGRNVL-VKDLKTHPEV   64 (75)
T ss_dssp             HHHCEEECSSSCCEEE-TTGGGTHHHH
T ss_pred             cCCCceEcccCCCcCc-HHHHHHHHHH
Confidence            4668999999999987 5889999865

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=96.69  E-value=0.00031  Score=42.46  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=22.7

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..|++.|.....|+.|+++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH
Confidence            379999999999999999999998

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.68  E-value=0.00054  Score=39.68  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|+|
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            478999999999999999999998665

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=95.70  E-value=0.00027  Score=41.22  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=23.3

Q ss_pred             CCCccccccccccCChHHHhccccc
Q 020332            1 MPGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         1 ~~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      +.||.|..|++.|.....|+.|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            3689999999999999999999998

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=96.67  E-value=0.00057  Score=39.50  Aligned_cols=26  Identities=12%  Similarity=0.171  Sum_probs=23.7

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.+...|..||..|.|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            68899999999999999999998654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.67  E-value=0.00097  Score=38.37  Aligned_cols=25  Identities=28%  Similarity=0.748  Sum_probs=22.5

Q ss_pred             CeeecC--CcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCG--LCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~--~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++|.|.  .|+|.|.+...|..|++.+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            378999  9999999999999999764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.69  E-value=0.00028  Score=41.05  Aligned_cols=26  Identities=23%  Similarity=0.606  Sum_probs=23.6

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.....|..||+.|+|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            68999999999999999999998654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.64  E-value=0.0035  Score=51.35  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhhhhhhhc
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAS   96 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~   96 (327)
                      .+++.|.+|+..|.+...+..|.++++|+.+..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~   62 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVR   62 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHH
Confidence            357899999999999999999999999988643

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=96.62  E-value=0.0012  Score=40.59  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|+|
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            589999999999999999999998654

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=96.62  E-value=0.00086  Score=42.59  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|.|
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRSCSQ   36 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTTC
T ss_pred             CCeECCCCCcccCCHHHHHHHhhhcCC
Confidence            589999999999999999999998654

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.52  E-value=0.0014  Score=42.63  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLRLHSR   37 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhCC
Confidence            589999999999999999999998654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.52  E-value=0.00081  Score=40.76  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|+|
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCeECCCCcchhCCHHHHHHHHHHHcC
Confidence            579999999999999999999998765

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.52  E-value=0.00065  Score=39.08  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=23.6

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.+...|..||+.|.|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            68899999999999999999998654

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.52  E-value=0.00094  Score=42.49  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|.|
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVLIHTG   36 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTHHHHS
T ss_pred             CCEeCCCcChhhCCHHHHHHHHHHcCC
Confidence            589999999999999999999997654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.52  E-value=0.0012  Score=50.41  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=28.9

Q ss_pred             hhcCCCCeeecCCcCCcccChHHHHHHHhhhhh
Q 020332           59 NKNATPMTYSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        59 ~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      .+|+++++|.|.+|+|.|.....|..|++.+..
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~   50 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNE   50 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCC
Confidence            357788999999999999999999999987543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.50  E-value=0.0015  Score=39.80  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|.+
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            589999999999999999999998654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.45  E-value=0.00092  Score=41.21  Aligned_cols=27  Identities=15%  Similarity=0.274  Sum_probs=24.9

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||..|+|
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            589999999999999999999998765

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=96.43  E-value=0.0011  Score=40.26  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||+.|++
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~H~~   32 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHHcCC
Confidence            589999999999999999999998664

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=96.43  E-value=0.0019  Score=38.16  Aligned_cols=26  Identities=19%  Similarity=0.373  Sum_probs=23.4

Q ss_pred             CCCCC--CCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCF--MCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~Cl--fC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|.  .|++.|.+...|..||+.|.|
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            68897  999999999999999998655

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.40  E-value=0.00096  Score=40.93  Aligned_cols=24  Identities=21%  Similarity=0.545  Sum_probs=22.9

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            589999999999999999999998

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.38  E-value=0.0019  Score=47.88  Aligned_cols=27  Identities=19%  Similarity=0.349  Sum_probs=24.4

Q ss_pred             cCCCCeeecCC--cCCcccChHHHHHHHh
Q 020332           61 NATPMTYSCGL--CGKGYRSSKALAQHLN   87 (327)
Q Consensus        61 h~~~~~~~C~~--C~K~F~s~~~l~~Hl~   87 (327)
                      +++++||.|..  |+|.|.....|+.|++
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~r   50 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQ   50 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHH
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhh
Confidence            56899999975  9999999999999984

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.37  E-value=0.001  Score=40.61  Aligned_cols=27  Identities=30%  Similarity=0.492  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.....|..||+.|.+
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            589999999999999999999998654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.35  E-value=0.0024  Score=46.40  Aligned_cols=29  Identities=10%  Similarity=-0.003  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccC
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGF  208 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f  208 (327)
                      ..|+.|..|++.|.....|..||+.|.+.
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            36899999999999999999999997763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=96.34  E-value=0.00051  Score=41.45  Aligned_cols=26  Identities=12%  Similarity=0.139  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |+.|..|++.|.+...|..||+.|.+
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~   27 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFI   27 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHcc
Confidence            78999999999999999999987554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.33  E-value=0.0031  Score=40.63  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=22.1

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhc
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      +|.|..|+   +.|.+...|+.||+..
T Consensus        12 ~~~C~~C~---k~F~~~~~L~~H~~~H   35 (44)
T 2epv_A           12 PYECNECG---KAFIWKSLLIVHERTH   35 (44)
T ss_dssp             SEECSSSC---CEESSHHHHHHHHGGG
T ss_pred             CeECCCCC---cccCchHHHHHHHhHh
Confidence            79999997   9999999999999864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.28  E-value=0.0013  Score=40.25  Aligned_cols=27  Identities=11%  Similarity=0.166  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.....|..||+.|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            589999999999999999999998654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.27  E-value=0.0025  Score=36.89  Aligned_cols=25  Identities=12%  Similarity=0.230  Sum_probs=21.7

Q ss_pred             CCCCCCCCCCCCChhhhhhh-hhhcc
Q 020332          182 PACCFMCDLPHDAIENCMVH-MHKCH  206 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~H-M~~~H  206 (327)
                      |+.|..|++.|.+...|..| +..|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHcc
Confidence            68999999999999999999 55543

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.25  E-value=0.0014  Score=40.16  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=24.9

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|+.|..|++.|.+...|..||+.|++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            3689999999999999999999998654

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.24  E-value=0.0013  Score=42.72  Aligned_cols=27  Identities=15%  Similarity=0.273  Sum_probs=24.4

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLRSHER   37 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHHHhCC
Confidence            589999999999999999999987654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=96.23  E-value=0.0014  Score=41.93  Aligned_cols=22  Identities=18%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             CCccccccccccCChHHHhccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHY   23 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~   23 (327)
                      .||.|..|+++|...+.|+.|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            5899999999999999999998

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.15  E-value=0.0017  Score=41.81  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=24.5

Q ss_pred             CCCCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.+  |++.|.+...|..||++|.|
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            6899986  99999999999999998665

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.14  E-value=0.0032  Score=37.25  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             CCCCCC--CCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCF--MCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Cl--fC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.  .|++.|.+...|..||+.|.|
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            478998  899999999999999998654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=96.12  E-value=0.0018  Score=40.55  Aligned_cols=27  Identities=15%  Similarity=0.225  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|.+...|..||..|.|
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~~   31 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHRR   31 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcCC
Confidence            578999999999999999999998665

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.03  E-value=0.0018  Score=39.89  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCCCh-hhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAI-ENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~-~~l~~HM~~~H~  207 (327)
                      .|+.|..|++.|... ..|..||..|.|
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            589999999999999 999999987654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=95.94  E-value=0.0021  Score=36.91  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=22.5

Q ss_pred             CCcccc--ccccccCChHHHhccccc
Q 020332            2 PGLTCN--SCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~--~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|.  .|++.|.....|+.|+++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHH
Confidence            379999  999999999999999998

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.84  E-value=0.0015  Score=40.63  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=22.3

Q ss_pred             CCccccccccccCChHHHhcc-ccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLH-YKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H-~ks   25 (327)
                      .||.|..|++.|.....|+.| ++.
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHH
Confidence            579999999999999999999 776

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=95.83  E-value=0.0021  Score=42.70  Aligned_cols=24  Identities=21%  Similarity=0.649  Sum_probs=22.8

Q ss_pred             CCccccccccccCChHHHhcccc-c
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYK-S   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~k-s   25 (327)
                      .+|.|..|++.|.....|+.|++ +
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~~~   30 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYAHS   30 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHHHS
T ss_pred             cCEECCCcCcccCCHHHHHHHhhhh
Confidence            58999999999999999999999 7

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.71  E-value=0.0012  Score=50.52  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.....|+.|+++
T Consensus        24 kpy~C~~C~k~F~~~~~L~~H~~~   47 (88)
T 1x6f_A           24 STYQCKHCDSKLQSTAELTSHLNI   47 (88)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCCEeCCHHHHHHHHHH
Confidence            579999999999999999999887

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.58  E-value=0.0087  Score=42.99  Aligned_cols=55  Identities=15%  Similarity=0.141  Sum_probs=39.7

Q ss_pred             CCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCcccc--ccCCCCcccCCHHHHHHHHHhc
Q 020332          186 FMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCL--YCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       186 lfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl--~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      .-|++.|++.+.|..|+...|-...+.               . -...|.|.  .|+   +.+.....|..|++.+
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~---------------~-~~~~~~C~W~~C~---~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFK---------------H-PMEPLACNWEDCD---FLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCC---------------C-SSCCEECCCSSCC---CEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccC---------------C-CCCCCEeeCCCCc---CCCCChHHHHhhcccc
Confidence            459999999999999997667211000               0 01268997  797   6677778999999976

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.34  E-value=0.0032  Score=51.58  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=26.8

Q ss_pred             CCccccccccccCChHHHhccccccccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYN   31 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryN   31 (327)
                      .+|.|..|++.|.+...|..|+++.-|+-+
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrr   78 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKR   78 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHH
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHH
Confidence            489999999999999999999999877533

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=95.22  E-value=0.0059  Score=37.74  Aligned_cols=27  Identities=15%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             CCCCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.+  |++.|.+...|..||+.|.|
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            5899985  99999999999999998654

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.04  E-value=0.015  Score=43.07  Aligned_cols=28  Identities=21%  Similarity=0.494  Sum_probs=24.1

Q ss_pred             CCCCCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..||.|.+  |++.|...+.|..||+..|.
T Consensus        25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHT   54 (73)
T 1x3c_A           25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHK   54 (73)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCeECCCCCcChhHcCHHHHHHHhhhhCC
Confidence            37999976  99999999999999964465

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.70  E-value=0.0072  Score=37.25  Aligned_cols=24  Identities=17%  Similarity=0.578  Sum_probs=22.3

Q ss_pred             CCcccc--ccccccCChHHHhccccc
Q 020332            2 PGLTCN--SCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~--~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|.  .|++.|.....|+.|+++
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~   30 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHH
Confidence            579999  599999999999999998

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=94.30  E-value=0.032  Score=39.94  Aligned_cols=58  Identities=19%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             ccc--cccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecC--CcCCcccCh
Q 020332            4 LTC--NSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCG--LCGKGYRSS   79 (327)
Q Consensus         4 f~C--~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~--~C~K~F~s~   79 (327)
                      |.|  ..|++.|.+...|..|+..+ |.        +-++                  . ....+|.|.  -|++.+...
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~-Hv--------~~~~------------------~-~~~~~~~C~W~~C~~~~~~~   53 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKD-HV--------SQDF------------------K-HPMEPLACNWEDCDFLGDDT   53 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHH-SC--------CCCC------------------C-CSSCCEECCCSSCCCEESSH
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhh-cc--------Cccc------------------C-CCCCCCEeeCCCCcCCCCCh
Confidence            455  35999999999999998543 52        1110                  0 012479996  999999999


Q ss_pred             HHHHHHHhhh
Q 020332           80 KALAQHLNSR   89 (327)
Q Consensus        80 ~~l~~Hl~sk   89 (327)
                      ..|.+|++.+
T Consensus        54 ~~L~~Hir~~   63 (64)
T 1zw8_A           54 ASIVNHINAQ   63 (64)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhhcccc
Confidence            9999999875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=93.68  E-value=0.015  Score=38.09  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=23.8

Q ss_pred             CCCCCC--CCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCF--MCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Cl--fC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.  .|++.|.....|..||+.|.|
T Consensus        17 k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A           17 KTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             TEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            589996  699999999999999998654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.37  E-value=0.025  Score=38.31  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .+|.|..|++.|.-...|+.||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            368999999999999999999995

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.31  E-value=0.091  Score=35.55  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=21.3

Q ss_pred             CCccccccCCCCcccCCHHHHHHHHH
Q 020332          232 RDFMCLYCNDRCHPFNSLEAVRKHME  257 (327)
Q Consensus       232 ~~~~Cl~C~~~gk~F~s~~~l~~HM~  257 (327)
                      ..+.|..||   +.|..+++|+.||+
T Consensus        11 ~~~~CPrCn---~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCN---AQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTC---CCCSSHHHHHHHHH
T ss_pred             CceeCCccc---ccccchHHHHhhhh
Confidence            368999998   99999999999998

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=90.82  E-value=0.043  Score=34.64  Aligned_cols=25  Identities=24%  Similarity=0.569  Sum_probs=23.1

Q ss_pred             CCccccccccccCChHHHhcccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSD   26 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksd   26 (327)
                      .+|.|+.|.+.|.++..|..||...
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye~~   28 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYEAV   28 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cccCCcHHHHHcCCHHHHHHHHHhc
Confidence            3699999999999999999999886

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=90.41  E-value=0.1  Score=36.27  Aligned_cols=30  Identities=30%  Similarity=0.660  Sum_probs=27.4

Q ss_pred             eecCCcCCcccChHHHHHHHhhhhhhhhhc
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSRSHIMRAS   96 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~   96 (327)
                      -.|.+|+..|..+-+++.|+-++.|+.+.+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk   43 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVR   43 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHH
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHH
Confidence            489999999999999999999999998654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=89.57  E-value=0.22  Score=31.40  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=22.3

Q ss_pred             eeecCCcCCcccChHHHHHHHhhhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      .|.|++|.|.|.+...|..|-.++.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            5999999999999999999997643

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=84.25  E-value=0.33  Score=30.07  Aligned_cols=24  Identities=21%  Similarity=0.549  Sum_probs=22.6

Q ss_pred             CCCCCCCCCCChhhhhhhhhhccc
Q 020332          184 CCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       184 ~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|-||.+.++.+.+|++|.+..|.
T Consensus        11 hcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999998885

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=83.85  E-value=0.5  Score=35.26  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=25.5

Q ss_pred             eeecCCcCCcc--cChHHHHHHHhhhhhhhhhc
Q 020332           66 TYSCGLCGKGY--RSSKALAQHLNSRSHIMRAS   96 (327)
Q Consensus        66 ~~~C~~C~K~F--~s~~~l~~Hl~skkHk~~~~   96 (327)
                      .|.|++|+..+  .+.+..+.|++.++|+.+.+
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~   35 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVK   35 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHH
Confidence            47899999998  44666899999999998543

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=83.41  E-value=0.35  Score=30.72  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.1

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      ..+.|..|+++|.+-..+..|.+-
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            358899999999999999999763

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=82.99  E-value=0.68  Score=37.49  Aligned_cols=29  Identities=28%  Similarity=0.560  Sum_probs=25.4

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhcCCccc
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKI  264 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~~k~Hcki  264 (327)
                      +..|++|.   ++|.+...+.+||+.++++-+
T Consensus        15 ~~~CLFCd---~~~~s~~~~l~H~k~~H~FD~   43 (121)
T 1wir_A           15 HTPCLFCD---RLFASAEETFSHCKLEHQFNI   43 (121)
T ss_dssp             CEECSSSC---CEESSHHHHHHHHHHSSCCCH
T ss_pred             ceeEecCC---CcccCHHHHHHHHHHhcCCCH
Confidence            57999998   999999999999999866544

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=82.53  E-value=0.33  Score=36.26  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=29.6

Q ss_pred             CCCcccccccccc-C-ChHHHhccccccccccchhhhhc
Q 020332            1 MPGLTCNSCNREF-N-DDAEQKLHYKSDWHRYNLKRKVA   37 (327)
Q Consensus         1 ~~~f~C~~C~~~F-~-~~~~lr~H~ksdwHryNlKRkva   37 (327)
                      |+.|-|..|++.+ . +....+.|...--|.-|+++-..
T Consensus         1 mPkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~   39 (77)
T 3cw1_L            1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYC   39 (77)
T ss_pred             CCCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHH
Confidence            7899999999999 3 46668999999888877765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.04
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.65
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.46
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.41
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.39
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.38
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.36
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.29
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.1
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	98.05
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	97.94
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.9
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.82
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.77
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.76
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.59
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.58
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.56
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.54
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	97.52
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.49
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.48
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.46
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	97.38
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	97.34
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.3
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.28
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.27
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.27
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.26
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	97.23
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.19
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.17
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.16
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.15
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.14
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	97.12
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	97.0
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.97
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.96
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	96.96
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.88
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	96.8
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.74
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	96.53
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.49
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.42
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.96
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.94
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.84
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	95.83
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.77
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.73
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.49
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.48
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.3
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.08
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.08
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.93
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	94.86
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.49
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.44
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.38
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.35
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	94.16
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.06
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.46
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.3
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.17
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.67
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.06
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	91.8
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.74
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.43
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	91.21
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	91.15
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.08
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.03
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.98
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.22
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.04
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	89.72
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	89.4
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.09
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.02
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	88.91
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	88.84
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	88.58
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	88.42
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	87.66
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	87.43
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	86.19
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	86.02
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	85.76
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	85.73
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	85.54
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	85.24
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	85.1
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	84.48
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.82
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	83.5
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	82.83
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	81.18
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	80.88
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	80.74

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.6e-11  Score=83.03  Aligned_cols=51  Identities=25%  Similarity=0.673  Sum_probs=46.4

Q ss_pred             CCccccccccccCChHHHhccccccccccchhhhhcCCCCccHHHHHHHHHHHHHHhhhcCCCCeeecCCcCCcccChHH
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA   81 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRkva~lppv~~~~F~~k~~~l~~~~~~h~~~~~~~C~~C~K~F~s~~~   81 (327)
                      .||+|. ||++|.....|+.|+++  |                                 +++++|.|.+||+.|...+.
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~--H---------------------------------t~ekpy~C~~C~k~F~~~~~   45 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSM--H---------------------------------LGLRPYGCGVCGKKFKMKHH   45 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHH--H---------------------------------SCCCSEECTTTSCEESSSHH
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhc--c---------------------------------ccccCCcCCCcCCEecCHHH
Confidence            589995 99999999999999887  4                                 47899999999999999999


Q ss_pred             HHHHHhh
Q 020332           82 LAQHLNS   88 (327)
Q Consensus        82 l~~Hl~s   88 (327)
                      |..|+++
T Consensus        46 L~~H~r~   52 (53)
T d2csha1          46 LVGHMKI   52 (53)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            9999975

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.1e-09  Score=72.31  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcccccChHHHHHHhhhhccCCccccccCCCCcccCCHHHHHHHHHh
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~~l~d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      .|+.|. ||+.|.....|..||++|.|                    ++   +|.|..|+   +.|.....|..||+.
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~--------------------ek---py~C~~C~---k~F~~~~~L~~H~r~   52 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLG--------------------LR---PYGCGVCG---KKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSC--------------------CC---SEECTTTS---CEESSSHHHHHHHTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhcccc--------------------cc---CCcCCCcC---CEecCHHHHHHHHhc
Confidence            589994 99999999999999987554                    44   89999997   999999999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=3.5e-08  Score=62.80  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             HhhhcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           57 EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        57 ~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |.++|++++||.|..|+|+|.....|.+|++.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            456799999999999999999999999999753

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.7e-08  Score=63.72  Aligned_cols=35  Identities=23%  Similarity=0.547  Sum_probs=31.6

Q ss_pred             HHhhhcCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           56 QEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        56 ~~~~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      +|+.+|++++||.|+.|||+|...+.|..|++++.
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            46778999999999999999999999999998753

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8.2e-08  Score=60.67  Aligned_cols=32  Identities=22%  Similarity=0.538  Sum_probs=29.1

Q ss_pred             hhcCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           59 NKNATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        59 ~~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++|++++||.|.+|+|+|...+.|..|++...
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            36899999999999999999999999998753

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=9.9e-08  Score=59.85  Aligned_cols=30  Identities=17%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             cCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           61 NATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        61 h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      |++++||.|.+|+|.|.....|++|++.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            679999999999999999999999998643

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.7e-08  Score=60.54  Aligned_cols=30  Identities=17%  Similarity=0.483  Sum_probs=28.0

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +|++++||.|++|+|+|+....|+.|++..
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            689999999999999999999999998764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.1e-07  Score=57.59  Aligned_cols=31  Identities=29%  Similarity=0.554  Sum_probs=28.4

Q ss_pred             hcCCCCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           60 KNATPMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        60 ~h~~~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      +|++++||.|..|||+|...+.|..|++.+.
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            3789999999999999999999999998764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1e-07  Score=61.25  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=22.2

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..|+++|.....|+.|++.
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~   27 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQ   27 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCcC
Confidence            589999999999999999999875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=7e-07  Score=53.06  Aligned_cols=27  Identities=19%  Similarity=0.643  Sum_probs=24.8

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++||.|.+|+|.|.....|.+|++++.
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            579999999999999999999999763

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=5.1e-07  Score=72.08  Aligned_cols=50  Identities=22%  Similarity=0.347  Sum_probs=43.4

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhcccCCCCCcc-----cccChHHHHHHhhhhc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE-----YLKDPKGLLTYLGLKV  230 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~f~ip~~~-----~l~d~~gLl~yl~~ki  230 (327)
                      .++.||||.+.|++...+++||+..|+|.+....     -+++...||+|++.++
T Consensus        14 ~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~~~~~LDfY~~IKLINYIR~~~   68 (121)
T d1wira_          14 QHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKN   68 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCCHHHHHHHHHHHHHTC
T ss_pred             ccceecccCCccCCHHHHHHHHHHhhCCCHHHHHHHcCCCccceEEEEeeeeccc
Confidence            5788999999999999999999999999998752     2467889999998764

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.2e-06  Score=49.82  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=23.3

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +||.|..|||.|...+.|.+|++.+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            5899999999999999999999874

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.90  E-value=2.3e-06  Score=51.20  Aligned_cols=27  Identities=19%  Similarity=0.640  Sum_probs=24.5

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      +||.|++|+|+|.....|+.|++++..
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccC
Confidence            589999999999999999999998653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=4e-06  Score=50.11  Aligned_cols=27  Identities=22%  Similarity=0.604  Sum_probs=24.4

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      +||.|.+|+|+|..++.|.+|++++..
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCC
Confidence            589999999999999999999998643

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.3e-06  Score=48.28  Aligned_cols=28  Identities=25%  Similarity=0.710  Sum_probs=26.2

Q ss_pred             eeecCCcCCcccChHHHHHHHhhhhhhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNSRSHIM   93 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~skkHk~   93 (327)
                      ||.|..|+.+|++...|..||+||.|.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhcc
Confidence            6899999999999999999999999854

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=3.2e-06  Score=60.33  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhhhhhhhc
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAS   96 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~   96 (327)
                      ...|.|..|+|.|.+.++|.+|++||+||++.+
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk   45 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLK   45 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHH
T ss_pred             CCEEecccccCccCCHHHHHHHHcccHHHHHHH
Confidence            346999999999999999999999999998654

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.4e-05  Score=50.92  Aligned_cols=26  Identities=31%  Similarity=0.727  Sum_probs=23.9

Q ss_pred             CCCeeecCCcCCcccChHHHHHHHhh
Q 020332           63 TPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        63 ~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      .++||.|..|||+|+....|++|++.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~   27 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQ   27 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcC
Confidence            46899999999999999999999874

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.59  E-value=1.6e-05  Score=47.41  Aligned_cols=27  Identities=15%  Similarity=0.235  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.+|++.|...+.|..||++|.|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccC
Confidence            389999999999999999999998655

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=7.6e-06  Score=48.42  Aligned_cols=27  Identities=19%  Similarity=0.416  Sum_probs=24.7

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|++|..|++.|...+.|..||++|.|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            589999999999999999999998654

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=6.9e-06  Score=54.59  Aligned_cols=30  Identities=17%  Similarity=0.495  Sum_probs=27.6

Q ss_pred             cCCCCeeecCC--cCCcccChHHHHHHHhhhh
Q 020332           61 NATPMTYSCGL--CGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        61 h~~~~~~~C~~--C~K~F~s~~~l~~Hl~skk   90 (327)
                      |+++++|.|.+  |+|+|.....|+.|++++.
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            77999999988  9999999999999998764

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.5e-05  Score=46.53  Aligned_cols=27  Identities=11%  Similarity=0.186  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.+||+.|...+.|..||++|-|
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCC
Confidence            489999999999999999999998654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=7.9e-06  Score=47.44  Aligned_cols=24  Identities=17%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|+.||++|...+.|..|.|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccC
Confidence            489999999999999999999998

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.6e-05  Score=46.82  Aligned_cols=26  Identities=23%  Similarity=0.618  Sum_probs=23.4

Q ss_pred             CeeecCC--cCCcccChHHHHHHHhhhh
Q 020332           65 MTYSCGL--CGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        65 ~~~~C~~--C~K~F~s~~~l~~Hl~skk   90 (327)
                      +||.|++  |+|+|.....|+.|++++.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            5899988  9999999999999998753

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=2.8e-05  Score=47.31  Aligned_cols=27  Identities=30%  Similarity=0.608  Sum_probs=24.3

Q ss_pred             CCeeecCC--cCCcccChHHHHHHHhhhh
Q 020332           64 PMTYSCGL--CGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        64 ~~~~~C~~--C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++||.|.+  |+|+|.+...|++|++++.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            47999988  9999999999999998754

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3e-05  Score=46.52  Aligned_cols=26  Identities=31%  Similarity=0.609  Sum_probs=23.7

Q ss_pred             CeeecCC--cCCcccChHHHHHHHhhhh
Q 020332           65 MTYSCGL--CGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        65 ~~~~C~~--C~K~F~s~~~l~~Hl~skk   90 (327)
                      +||.|+.  |+|+|.+...|+.|++++.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            5899999  9999999999999998754

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=2.1e-05  Score=48.86  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..|+++|..+..|+.|+++
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             ccccCCCCCCcccChHHHHHHccc
Confidence            699999999999999999999998

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=1.9e-05  Score=49.48  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.9

Q ss_pred             Cccccc--cccccCChHHHhccccc
Q 020332            3 GLTCNS--CNREFNDDAEQKLHYKS   25 (327)
Q Consensus         3 ~f~C~~--C~~~F~~~~~lr~H~ks   25 (327)
                      .|.|..  |+++|..+..|+.|+++
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~   25 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKL   25 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHH
T ss_pred             CeECCCCCCCCeeCChhHhccccCe
Confidence            378986  99999999999999998

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=3.9e-05  Score=47.96  Aligned_cols=29  Identities=17%  Similarity=0.359  Sum_probs=26.5

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhcccC
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHGF  208 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~f  208 (327)
                      ..|+.|.+|++.|.....|..||..+|+-
T Consensus         6 ekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           6 EKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCCEeCCCCcccccchHHHHHHcccccCC
Confidence            37999999999999999999999888874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=6.4e-05  Score=44.66  Aligned_cols=26  Identities=23%  Similarity=0.692  Sum_probs=23.2

Q ss_pred             CeeecCC--cCCcccChHHHHHHHhhhh
Q 020332           65 MTYSCGL--CGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        65 ~~~~C~~--C~K~F~s~~~l~~Hl~skk   90 (327)
                      +||.|.+  |+|+|.+...|++|++.+.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            5899988  9999999999999998653

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=4.4e-05  Score=47.67  Aligned_cols=28  Identities=21%  Similarity=0.402  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|+.|..||+.|...+.|..||++||+
T Consensus         6 ekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            3699999999999999999999999886

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=4.1e-05  Score=45.12  Aligned_cols=25  Identities=28%  Similarity=0.660  Sum_probs=22.8

Q ss_pred             CeeecCC--cCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGL--CGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~--C~K~F~s~~~l~~Hl~sk   89 (327)
                      +||.|+.  |+|+|.+...|++|++++
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            5899988  999999999999999864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=7.5e-05  Score=42.97  Aligned_cols=28  Identities=39%  Similarity=0.858  Sum_probs=25.8

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhcCCcc
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  263 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~~k~Hck  263 (327)
                      ||.|.+|+   -.|++..+|-+||..|.|.+
T Consensus         1 py~C~~Cn---F~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCN---FSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSS---CEESSHHHHHHHHHSSSSCC
T ss_pred             Ccccceee---eeEeeccchhHhhhhhhhcc
Confidence            57899999   89999999999999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=8.7e-05  Score=46.80  Aligned_cols=28  Identities=14%  Similarity=0.134  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|+.|..||+.|...+.|..||++|.|
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             CCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            3799999999999999999999998655

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=7.4e-05  Score=45.05  Aligned_cols=26  Identities=27%  Similarity=0.684  Sum_probs=23.0

Q ss_pred             CeeecC--CcCCcccChHHHHHHHhhhh
Q 020332           65 MTYSCG--LCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        65 ~~~~C~--~C~K~F~s~~~l~~Hl~skk   90 (327)
                      +||.|+  .|+|+|.....|+.|++++.
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            589995  69999999999999998754

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=9.4e-05  Score=41.33  Aligned_cols=24  Identities=25%  Similarity=0.668  Sum_probs=22.1

Q ss_pred             eeecCCcCCcccChHHHHHHHhhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |++|++|+|.|..+..|+-||+++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CCccchhhhHhcchhHHHHHhhcc
Confidence            468999999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00012  Score=40.84  Aligned_cols=26  Identities=23%  Similarity=0.398  Sum_probs=23.1

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |.+|.+|++.|+....|..||+.|.|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56899999999999999999997643

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00013  Score=41.93  Aligned_cols=26  Identities=19%  Similarity=0.625  Sum_probs=22.9

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      ++||.|++||+.|..+-..++|.+.+
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            47999999999999999999988753

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00012  Score=43.71  Aligned_cols=27  Identities=26%  Similarity=0.549  Sum_probs=24.3

Q ss_pred             CCCCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.+  |++.|...+.|..||++|-|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            3899999  99999999999999998654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00011  Score=46.01  Aligned_cols=23  Identities=22%  Similarity=0.550  Sum_probs=21.7

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHh
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      ||+|..|+   +.|.....|+.||+.
T Consensus        11 Py~C~~C~---k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_          11 PFQCPDCD---RSFSRSDHLALHRKR   33 (37)
T ss_dssp             SBCCTTTC---CCBSSHHHHHHHHGG
T ss_pred             CeEeCCCC---CEecCHHHHHHHHhc
Confidence            89999997   999999999999974

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00011  Score=44.86  Aligned_cols=24  Identities=17%  Similarity=0.510  Sum_probs=22.4

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhc
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHMEAK  259 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~~k  259 (327)
                      ||+|..|+   |+|.....|..||+.+
T Consensus         7 py~C~~Cg---k~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           7 PYGCVECG---KAFSRSSILVQHQRVH   30 (33)
T ss_dssp             CEECSSSC---CEESSHHHHHHHHHGG
T ss_pred             CeeCCCCC---CEeCchHHhHhhcccc
Confidence            89999996   9999999999999964

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=9e-05  Score=44.34  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=23.9

Q ss_pred             CCCCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.+  |++.|...+.|..||++|-|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            3789988  99999999999999998654

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=6.2e-05  Score=44.31  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=22.7

Q ss_pred             CCccccc--cccccCChHHHhccccc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..  |+++|..++.|+.|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            4899988  99999999999999998

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00013  Score=44.22  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=23.0

Q ss_pred             CCccccc--cccccCChHHHhccccc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..  |+++|..++.|+.|+++
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            6899988  99999999999999999

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00013  Score=41.93  Aligned_cols=24  Identities=33%  Similarity=0.671  Sum_probs=23.0

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|.+||+.|..+...+.|.+.
T Consensus         2 kPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhh
Confidence            699999999999999999999998

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00035  Score=41.99  Aligned_cols=27  Identities=19%  Similarity=0.356  Sum_probs=23.3

Q ss_pred             CCCCCC--CCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCF--MCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Cl--fC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|+.|.  -|++.|...+.|..||++|-|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            378995  599999999999999998654

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00014  Score=43.10  Aligned_cols=24  Identities=25%  Similarity=0.587  Sum_probs=22.5

Q ss_pred             CCccccc--cccccCChHHHhccccc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..  |+++|.+++.|+.|+++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            4899988  99999999999999998

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00037  Score=43.32  Aligned_cols=25  Identities=16%  Similarity=0.216  Sum_probs=21.4

Q ss_pred             CCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          183 ACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       183 ~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      +.|.+  |++.|.....|..||++|-|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htg   28 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSD   28 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCC
Confidence            46876  99999999999999998544

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.49  E-value=0.0006  Score=42.34  Aligned_cols=27  Identities=33%  Similarity=0.844  Sum_probs=24.0

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      +.|.|.+|+|.|.+..+|--||++++.
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcc
Confidence            579999999999999999999977543

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00074  Score=39.37  Aligned_cols=27  Identities=26%  Similarity=0.693  Sum_probs=24.3

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++||.|++|+.+|+.+.-+.-|.+|+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            479999999999999999999999864

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0022  Score=36.54  Aligned_cols=27  Identities=30%  Similarity=0.596  Sum_probs=23.9

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ++||+|.+|...-+..++|..|++++.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            479999999988889999999999753

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0023  Score=36.79  Aligned_cols=27  Identities=19%  Similarity=0.388  Sum_probs=25.3

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .||.|.+|...+...++|..|..+.|+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            489999999999999999999999897

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0013  Score=38.18  Aligned_cols=27  Identities=22%  Similarity=0.463  Sum_probs=23.9

Q ss_pred             CCCCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      .||.|.+  |++.+...+.|.+||+.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            3788866  99999999999999998886

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.00087  Score=44.03  Aligned_cols=28  Identities=14%  Similarity=0.191  Sum_probs=25.1

Q ss_pred             CCCCCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          180 FDPACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       180 ~~p~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      ..|+.|.+  |++.|...+.|..||++|-|
T Consensus        16 ekpy~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_          16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             CCCeECCcCCCCccccCchHHHhhcccccC
Confidence            36999998  99999999999999998655

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.003  Score=39.55  Aligned_cols=26  Identities=23%  Similarity=0.598  Sum_probs=23.2

Q ss_pred             CCCeeecCCcCCcccChHHHHHHHhh
Q 020332           63 TPMTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        63 ~~~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      +-+||.|.+|+|.|-.+..+.+|..+
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            56899999999999999999999754

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0027  Score=36.47  Aligned_cols=28  Identities=25%  Similarity=0.488  Sum_probs=24.9

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhhhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSRSHI   92 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~skkHk   92 (327)
                      +||.|..|..+-..++.|+.|+++|..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            4899999999999999999999987654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0036  Score=36.25  Aligned_cols=25  Identities=32%  Similarity=0.736  Sum_probs=22.4

Q ss_pred             CeeecCC--cCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGL--CGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~--C~K~F~s~~~l~~Hl~sk   89 (327)
                      +||.|.+  |+|+|...++|+.|+++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~   27 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTV   27 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhh
Confidence            4899988  999999999999999864

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.48  E-value=0.0044  Score=34.07  Aligned_cols=24  Identities=33%  Similarity=0.843  Sum_probs=21.8

Q ss_pred             eecCCcCCcccChHHHHHHHhhhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      |+|-.|.++|-.+++|.+|.+.++
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999998754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.30  E-value=0.0034  Score=36.73  Aligned_cols=27  Identities=22%  Similarity=0.354  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhcccC
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHGF  208 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~f  208 (327)
                      |+.|.+|++.|+..+.++.|..+-|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            678999999999999999999998874

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.08  E-value=0.0022  Score=36.64  Aligned_cols=24  Identities=33%  Similarity=0.638  Sum_probs=22.8

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      +.|+|..|...|..+-.||.||-+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvs   26 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVS   26 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             ceEEeHHHHHHHHHHHhheeeeec
Confidence            569999999999999999999998

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0018  Score=45.69  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=28.2

Q ss_pred             CCccccccccccCChHHHhccccccccccchhh
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKR   34 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ksdwHryNlKR   34 (327)
                      ..|.|..|++.|.+...|..|++|.-|+-++|+
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~   46 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQ   46 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHH
Confidence            358999999999999999999999988655443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0032  Score=36.08  Aligned_cols=26  Identities=35%  Similarity=0.599  Sum_probs=24.2

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      |++|.||..--.+.++|..||.+.||
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            78999999888999999999999997

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0037  Score=35.69  Aligned_cols=23  Identities=17%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             CccccccccccCChHHHhccccc
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .|.|..|+.....++.|+.|+|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CccccccCcccCCHHHHHHHHHH
Confidence            37899999999999999999999

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0059  Score=34.68  Aligned_cols=27  Identities=22%  Similarity=0.480  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      .|++|.+|.+...+.+.|..|++.|.|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            489999999999999999999998655

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.0054  Score=33.67  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=21.1

Q ss_pred             CCccccccccccCChHHHhcccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYK   24 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~k   24 (327)
                      .||+|..|..+|-...+|..||-
T Consensus         1 mpykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999985

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.38  E-value=0.0052  Score=37.95  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=22.6

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      ..|.|.+|++.|.+...|=-||++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~   27 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNV   27 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CccCCCCCCCccCCcccccchHhh
Confidence            368999999999999999999999

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.0049  Score=35.78  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|..|+..|...+-+..|.|+
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCcccchHHHHhhccccceEeeec
Confidence            689999999999999999999998

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.015  Score=33.12  Aligned_cols=24  Identities=25%  Similarity=0.654  Sum_probs=22.3

Q ss_pred             eecCCcCCcccChHHHHHHHhhhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      |.|+.||......+.|+.|++++.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             ccccccCcccCCHHHHHHHHHHhc
Confidence            789999999999999999999864

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.017  Score=32.54  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             eeecCCcCCcccChHHHHHHHhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      .+.|..|||.|...+.|++|.-.
T Consensus         2 ~hvc~ecgkaf~essklkrh~lv   24 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLV   24 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG
T ss_pred             cchHHHHhHHHHHHHHHHHHhhc
Confidence            46899999999999999999754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.46  E-value=0.02  Score=33.33  Aligned_cols=23  Identities=30%  Similarity=0.863  Sum_probs=20.7

Q ss_pred             eeecCCcCCcccChHHHHHHHhh
Q 020332           66 TYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      ||.|.+|++.|..+-.+.+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            68999999999999999999753

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.023  Score=33.88  Aligned_cols=23  Identities=26%  Similarity=0.777  Sum_probs=20.4

Q ss_pred             CeeecCCcCCcccChHHHHHHHh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLN   87 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~   87 (327)
                      ..|.|..|+|.|..++.+.+|-.
T Consensus         3 ~afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             ceeeecccccchhcchHHHHHhh
Confidence            46899999999999999988864

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.021  Score=33.77  Aligned_cols=27  Identities=33%  Similarity=0.556  Sum_probs=22.8

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSRSH   91 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~skkH   91 (327)
                      +...|++|||.|+..-.|.+|.-|+..
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~   30 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSG   30 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCS
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCC
Confidence            567899999999999989888877554

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.67  E-value=0.035  Score=30.31  Aligned_cols=23  Identities=22%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHh
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~~  258 (327)
                      +|+|..|.   ..|-....|+.||..
T Consensus         2 pykcsscs---qqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCS---QQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSC---CEESSHHHHHHHHHH
T ss_pred             CCcccHHH---HHHHHHHHHHHHHHh
Confidence            68999997   999999999999984

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.06  E-value=0.044  Score=32.32  Aligned_cols=24  Identities=29%  Similarity=0.664  Sum_probs=21.2

Q ss_pred             CCeeecCCcCCcccChHHHHHHHh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLN   87 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~   87 (327)
                      +..|.|..||-+|.+.++|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            457899999999999999999963

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.03  Score=31.52  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             CccccccccccCChHHHhccccc
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      ...|..||++|..++.|+.|+-.
T Consensus         2 ~hvc~ecgkaf~essklkrh~lv   24 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLV   24 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG
T ss_pred             cchHHHHhHHHHHHHHHHHHhhc
Confidence            35799999999999999999876

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.74  E-value=0.068  Score=30.27  Aligned_cols=27  Identities=22%  Similarity=0.619  Sum_probs=23.9

Q ss_pred             CCeeecCCcCCcccChHHHHHHHhhhh
Q 020332           64 PMTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        64 ~~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      +..|.|.+|...|+.+-.|+-||-|+.
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            357999999999999999999998764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.016  Score=33.77  Aligned_cols=24  Identities=17%  Similarity=0.634  Sum_probs=21.4

Q ss_pred             CCccccc--cccccCChHHHhccc-cc
Q 020332            2 PGLTCNS--CNREFNDDAEQKLHY-KS   25 (327)
Q Consensus         2 ~~f~C~~--C~~~F~~~~~lr~H~-ks   25 (327)
                      .||.|..  |.++|.++++.-+|. |+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT   27 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT   27 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc
Confidence            4899988  999999999999996 77

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=91.21  E-value=0.019  Score=38.33  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=29.0

Q ss_pred             ccccccccccCChHHHhccccccccccchhhh
Q 020332            4 LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRK   35 (327)
Q Consensus         4 f~C~~C~~~F~~~~~lr~H~ksdwHryNlKRk   35 (327)
                      .-|..|+..|+++..-..||.-.-|+-|||++
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            35999999999999999999988899998875

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.15  E-value=0.044  Score=42.62  Aligned_cols=42  Identities=29%  Similarity=0.551  Sum_probs=31.4

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhcCCcccCCCCCChhHHHhhh-hhccc
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELE-EFYDY  283 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~~k~Hcki~~~~~~~e~~~e~~-~fYd~  283 (327)
                      +-.|++|.   +.|.+...+.+||+.+++.-+.      .-+..+. +||++
T Consensus        15 ~~~CLFCd---~~f~s~~~~l~H~k~~H~FD~~------~~~~~~~LDfY~~   57 (121)
T d1wira_          15 HTPCLFCD---RLFASAEETFSHCKLEHQFNID------SMVHKHGLEFYGY   57 (121)
T ss_dssp             CEECSSSC---CEESSHHHHHHHHHHSSCCCHH------HHHHHTTCCHHHH
T ss_pred             cceecccC---CccCCHHHHHHHHHHhhCCCHH------HHHHHcCCCccce
Confidence            45899998   9999999999999988665443      1233432 78887

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.068  Score=29.91  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      +||+|..|.-.-...+.|..|+|.+
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            5899999999999999999999875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.03  E-value=0.05  Score=32.09  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             CCccccccccccCChHHHhcccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYK   24 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~k   24 (327)
                      ..|.|.-||++|.+.+.|..|..
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35899999999999999999965

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.04  Score=30.89  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             CCCCCCCCCCCCCChhhhhhhhhhc
Q 020332          181 DPACCFMCDLPHDAIENCMVHMHKC  205 (327)
Q Consensus       181 ~p~~ClfC~~~f~s~~~l~~HM~~~  205 (327)
                      .|++|-.|++.....+.|.+|.+.|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            5899999999999999999999874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.097  Score=29.71  Aligned_cols=24  Identities=17%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             CeeecCCcCCcccChHHHHHHHhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      +||+|..|..--+..+.|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            589999999888889999999864

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.069  Score=31.46  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             ccccccccccCChHHHhccccc
Q 020332            4 LTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         4 f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      ..|..||+.|.+...|..|.-+
T Consensus         6 ~~ce~cgk~frdvyhlnrhkls   27 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLS   27 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGG
T ss_pred             hhHHHHHHHHHHHHHHHhhhcc
Confidence            5799999999999999998777

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.72  E-value=0.11  Score=28.77  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             ecCCcCCcccChHHHHHHHhhh
Q 020332           68 SCGLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        68 ~C~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      .|++|.|+|.|+--|+.|-+.+
T Consensus         2 qcp~c~k~f~skyylkvhnr~h   23 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKH   23 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccccc
Confidence            5999999999999999998754

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=89.40  E-value=0.084  Score=28.77  Aligned_cols=22  Identities=23%  Similarity=0.585  Sum_probs=20.8

Q ss_pred             ccccccccccCChHHHhccccc
Q 020332            4 LTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         4 f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      |+|-.|..+|...+.|..|.+.
T Consensus         1 ykcglcersfveksalsrhqrv   22 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHHh
Confidence            6899999999999999999997

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.09  E-value=0.13  Score=29.05  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=20.8

Q ss_pred             Ceeec--CCcCCcccChHHHHHHHhhh
Q 020332           65 MTYSC--GLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        65 ~~~~C--~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      .||.|  +-|+|+|.+.+-|++|-+.+
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            37888  56999999999999997653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.02  E-value=0.048  Score=30.88  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=21.5

Q ss_pred             CCcccc--ccccccCChHHHhccccc
Q 020332            2 PGLTCN--SCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~--~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|.  -|++.|..++-|+.|-+.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            589996  499999999999999887

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.91  E-value=0.11  Score=28.90  Aligned_cols=21  Identities=33%  Similarity=0.724  Sum_probs=18.5

Q ss_pred             eeecCCcCCcccChHHHHHHH
Q 020332           66 TYSCGLCGKGYRSSKALAQHL   86 (327)
Q Consensus        66 ~~~C~~C~K~F~s~~~l~~Hl   86 (327)
                      ||.|..|||.|-.+..|..|-
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            689999999999988888885

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.067  Score=33.26  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.5

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .||.|+.|++.|-.++.+..|.-+
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhhhh
Confidence            689999999999999999998654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.58  E-value=0.15  Score=30.37  Aligned_cols=26  Identities=27%  Similarity=0.722  Sum_probs=22.0

Q ss_pred             Cccccc--cCCCCcccCCHHHHHHHHHh
Q 020332          233 DFMCLY--CNDRCHPFNSLEAVRKHMEA  258 (327)
Q Consensus       233 ~~~Cl~--C~~~gk~F~s~~~l~~HM~~  258 (327)
                      .|.|.+  |.-.|+.|.+...|..|||.
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~   29 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRR   29 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHH
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhh
Confidence            367854  87778999999999999995

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.074  Score=34.22  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=21.3

Q ss_pred             CccccccccccCChHHHhccccc
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      .|.|-.|++.|+++..||.|-..
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQ   28 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQ   28 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHh
Confidence            58999999999999999999876

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.66  E-value=0.094  Score=33.69  Aligned_cols=30  Identities=30%  Similarity=0.660  Sum_probs=27.3

Q ss_pred             eecCCcCCcccChHHHHHHHhhhhhhhhhc
Q 020332           67 YSCGLCGKGYRSSKALAQHLNSRSHIMRAS   96 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~skkHk~~~~   96 (327)
                      -.|.+|+..|..+-..+.|+-++.|+.+..
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk   36 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVR   36 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHH
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHH
Confidence            579999999999999999999999998654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.15  Score=32.65  Aligned_cols=26  Identities=35%  Similarity=0.684  Sum_probs=22.1

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSRS   90 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~skk   90 (327)
                      ..|.|-+|+|.|.....|++|-..+.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            36889999999999999999986543

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.23  Score=27.73  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=21.5

Q ss_pred             CccccccCCCCcccCCHHHHHHHHHhcCCcc
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  263 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~~k~Hck  263 (327)
                      +-+|..|.   .+.++..+|+.|-|.  ||+
T Consensus         2 pekc~ecs---yscsskaalrvh~ri--hc~   27 (28)
T d1x5wa1           2 PEKCSECS---YSCSSKAALRIHERI--HCT   27 (28)
T ss_dssp             SEECSSSS---CEESSHHHHHHHHGG--GCC
T ss_pred             CccCcccc---cccCcHHHHHHhhcc--ccC
Confidence            34799997   788999999999985  664

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.02  E-value=0.11  Score=30.18  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=22.8

Q ss_pred             CCCCCCC--CCCCCCChhhhhhhhhhccc
Q 020332          181 DPACCFM--CDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       181 ~p~~Clf--C~~~f~s~~~l~~HM~~~H~  207 (327)
                      .||.|.+  |++.|+..+.-.+|....|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3789988  99999999999999855564

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.76  E-value=0.12  Score=28.92  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             CCCCCCCCCCCChhhhhhhhhhccc
Q 020332          183 ACCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       183 ~~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      ++|+.|+......+.|..||+.-|+
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccCCcchhheeehhhhhHHhhhccc
Confidence            6899999999999999999998775

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.73  E-value=0.26  Score=27.13  Aligned_cols=24  Identities=25%  Similarity=0.240  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCChhhhhhhhhhccc
Q 020332          184 CCFMCDLPHDAIENCMVHMHKCHG  207 (327)
Q Consensus       184 ~ClfC~~~f~s~~~l~~HM~~~H~  207 (327)
                      +|+.|.+.|.+.--|..|-++|.|
T Consensus         2 qcp~c~k~f~skyylkvhnr~htg   25 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTG   25 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSS
T ss_pred             cCcchHHHHHHhHhhhhccccccC
Confidence            699999999999999999888655

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.091  Score=32.11  Aligned_cols=30  Identities=23%  Similarity=0.602  Sum_probs=24.9

Q ss_pred             CCccc--cccccccCChHHHhccccccccccchh
Q 020332            2 PGLTC--NSCNREFNDDAEQKLHYKSDWHRYNLK   33 (327)
Q Consensus         2 ~~f~C--~~C~~~F~~~~~lr~H~ksdwHryNlK   33 (327)
                      .||.|  .-|+.+|.+.+.|..|.+.  |.-+||
T Consensus         5 kPF~C~~pGC~q~F~neDhL~vHk~K--H~m~Lk   36 (38)
T d1bhia_           5 KPFLCTAPGCGQRFTNEDHLAVHKHK--HEMTLK   36 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHH--HHTTTT
T ss_pred             CceecCCCCccccccchHHHHHhhhh--heeeec
Confidence            58999  5699999999999999887  655543

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=85.24  E-value=0.2  Score=33.25  Aligned_cols=31  Identities=19%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             CeeecCCcCCcccChHHHHHHHhhhhhhhhh
Q 020332           65 MTYSCGLCGKGYRSSKALAQHLNSRSHIMRA   95 (327)
Q Consensus        65 ~~~~C~~C~K~F~s~~~l~~Hl~skkHk~~~   95 (327)
                      +...|.+|+..|++...-++|-.-|+|.++.
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~l   50 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNL   50 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHH
T ss_pred             chhhhhhhhcccCCHHHHHHHhhhhHHHHHH
Confidence            4457999999999999999999999998753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.10  E-value=0.33  Score=29.50  Aligned_cols=25  Identities=24%  Similarity=0.545  Sum_probs=20.3

Q ss_pred             CCCeeec--CCcCCcccChHHHHHHHh
Q 020332           63 TPMTYSC--GLCGKGYRSSKALAQHLN   87 (327)
Q Consensus        63 ~~~~~~C--~~C~K~F~s~~~l~~Hl~   87 (327)
                      .++||.|  +-|+.+|.+...|..|..
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~   29 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKH   29 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhh
Confidence            4689999  789999999877766653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.48  E-value=0.32  Score=26.47  Aligned_cols=22  Identities=23%  Similarity=0.664  Sum_probs=20.0

Q ss_pred             eecCCcCCcccChHHHHHHHhh
Q 020332           67 YSCGLCGKGYRSSKALAQHLNS   88 (327)
Q Consensus        67 ~~C~~C~K~F~s~~~l~~Hl~s   88 (327)
                      |.|++|=|.|..+..+..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999864

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.82  E-value=0.37  Score=26.66  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=19.1

Q ss_pred             eec--CCcCCcccChHHHHHHHhhh
Q 020332           67 YSC--GLCGKGYRSSKALAQHLNSR   89 (327)
Q Consensus        67 ~~C--~~C~K~F~s~~~l~~Hl~sk   89 (327)
                      |.|  +-|+|.|+..++|+.|.-++
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            455  57999999999999998764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.50  E-value=0.41  Score=26.55  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             CccccccCCCCcccCCHHHHHHHHH
Q 020332          233 DFMCLYCNDRCHPFNSLEAVRKHME  257 (327)
Q Consensus       233 ~~~Cl~C~~~gk~F~s~~~l~~HM~  257 (327)
                      +|+|+.|+   |.+-..++|..|--
T Consensus         1 pf~c~kcg---kcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCG---KCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTC---CBCSSHHHHHHHHH
T ss_pred             CCccccch---hhhhhHhHHHHHHH
Confidence            57999996   88999999999964

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.83  E-value=0.18  Score=28.12  Aligned_cols=27  Identities=19%  Similarity=0.614  Sum_probs=23.3

Q ss_pred             CccccccccccCChHHHhcccccccccc
Q 020332            3 GLTCNSCNREFNDDAEQKLHYKSDWHRY   30 (327)
Q Consensus         3 ~f~C~~C~~~F~~~~~lr~H~ksdwHry   30 (327)
                      .|.|..|+......++|+.|++.- |.|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl-hsy   28 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ-HSY   28 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT-SCC
T ss_pred             CccCCcchhheeehhhhhHHhhhc-ccC
Confidence            588999999999999999999863 544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=0.26  Score=27.53  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             CCCCCCCCCCCCChhhhhhhhhhc
Q 020332          182 PACCFMCDLPHDAIENCMVHMHKC  205 (327)
Q Consensus       182 p~~ClfC~~~f~s~~~l~~HM~~~  205 (327)
                      |.+|..|.+..++...|..|-+.|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            568999999999999999998864

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.88  E-value=0.43  Score=28.29  Aligned_cols=30  Identities=27%  Similarity=0.554  Sum_probs=24.6

Q ss_pred             CCCeeecCCcCCcccChHHHHHHHhhhhhhh
Q 020332           63 TPMTYSCGLCGKGYRSSKALAQHLNSRSHIM   93 (327)
Q Consensus        63 ~~~~~~C~~C~K~F~s~~~l~~Hl~skkHk~   93 (327)
                      +...|.|.+|.+.|...+.+-+|--+ +||.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvt-SHk~   34 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVT-SHKR   34 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHH-HSSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHh-hccc
Confidence            55689999999999999999999765 3443

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=0.28  Score=29.03  Aligned_cols=24  Identities=17%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             CCccccccccccCChHHHhccccc
Q 020332            2 PGLTCNSCNREFNDDAEQKLHYKS   25 (327)
Q Consensus         2 ~~f~C~~C~~~F~~~~~lr~H~ks   25 (327)
                      ..|.|..|++.|..+..+-.|-..
T Consensus         3 ~afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             ceeeecccccchhcchHHHHHhhh
Confidence            469999999999999888877543