Query 020333
Match_columns 327
No_of_seqs 278 out of 1651
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 3.4E-28 7.3E-33 204.1 12.4 133 2-190 1-136 (138)
2 KOG1717 Dual specificity phosp 99.9 1.1E-27 2.3E-32 215.6 11.0 126 1-180 171-297 (343)
3 KOG1718 Dual specificity phosp 99.9 2.3E-27 5E-32 200.6 9.6 134 3-192 18-154 (198)
4 KOG1716 Dual specificity phosp 99.9 7.6E-26 1.6E-30 212.6 10.5 136 2-190 75-213 (285)
5 cd00127 DSPc Dual specificity 99.9 3.1E-25 6.7E-30 185.6 12.5 134 2-189 2-138 (139)
6 PF00782 DSPc: Dual specificit 99.9 2.8E-25 6.1E-30 185.0 6.7 125 9-187 1-128 (133)
7 PRK12361 hypothetical protein; 99.9 4E-21 8.6E-26 195.8 13.8 122 2-176 95-218 (547)
8 PTZ00242 protein tyrosine phos 99.8 7.2E-18 1.6E-22 146.5 12.5 77 100-177 60-141 (166)
9 KOG1719 Dual specificity phosp 99.7 9.4E-18 2E-22 140.6 9.4 123 4-176 27-151 (183)
10 PTZ00393 protein tyrosine phos 99.7 1.3E-16 2.7E-21 144.4 11.7 76 100-177 136-212 (241)
11 COG2453 CDC14 Predicted protei 99.5 2.6E-14 5.7E-19 125.8 9.7 77 100-177 71-149 (180)
12 KOG1720 Protein tyrosine phosp 99.5 1.5E-13 3.2E-18 121.0 12.1 78 99-177 113-190 (225)
13 PF05706 CDKN3: Cyclin-depende 99.4 1.4E-12 3E-17 111.9 10.2 106 17-168 61-168 (168)
14 TIGR01244 conserved hypothetic 99.3 2.8E-11 6E-16 101.7 12.0 123 2-174 2-124 (135)
15 PF03162 Y_phosphatase2: Tyros 99.3 1.4E-11 3.1E-16 106.8 9.0 119 3-173 8-129 (164)
16 KOG2836 Protein tyrosine phosp 99.1 4.7E-10 1E-14 92.4 9.4 91 101-193 62-156 (173)
17 PF04273 DUF442: Putative phos 99.0 8.4E-10 1.8E-14 89.5 7.8 102 3-153 3-104 (110)
18 smart00404 PTPc_motif Protein 99.0 4.5E-09 9.7E-14 82.6 9.5 71 107-177 8-88 (105)
19 smart00012 PTPc_DSPc Protein t 99.0 4.5E-09 9.7E-14 82.6 9.5 71 107-177 8-88 (105)
20 PLN02727 NAD kinase 98.8 3.9E-08 8.4E-13 103.2 10.9 111 8-165 262-372 (986)
21 COG3453 Uncharacterized protei 98.7 2E-07 4.3E-12 75.5 10.3 120 3-173 4-124 (130)
22 cd00047 PTPc Protein tyrosine 98.6 1.5E-07 3.3E-12 85.4 9.3 77 100-176 128-213 (231)
23 COG5350 Predicted protein tyro 98.5 6.2E-07 1.3E-11 75.7 8.9 61 116-176 75-136 (172)
24 smart00194 PTPc Protein tyrosi 98.5 3.7E-07 8E-12 84.4 8.2 59 119-177 176-241 (258)
25 PF13350 Y_phosphatase3: Tyros 98.5 1.4E-06 3.1E-11 75.3 10.9 34 135-169 125-158 (164)
26 KOG1572 Predicted protein tyro 98.1 2.7E-05 5.8E-10 70.4 10.3 117 3-173 61-186 (249)
27 PHA02742 protein tyrosine phos 98.1 1.4E-05 3E-10 76.1 9.0 42 135-176 230-276 (303)
28 PRK15375 pathogenicity island 98.1 1.5E-05 3.2E-10 79.5 8.6 76 102-177 423-510 (535)
29 PHA02740 protein tyrosine phos 98.0 2.1E-05 4.4E-10 74.7 9.0 42 135-176 222-268 (298)
30 PF14566 PTPlike_phytase: Inos 98.0 1.5E-05 3.3E-10 68.0 6.1 60 98-158 89-148 (149)
31 PHA02746 protein tyrosine phos 98.0 2.6E-05 5.7E-10 74.8 8.3 42 135-176 248-294 (323)
32 PF00102 Y_phosphatase: Protei 97.9 3.5E-05 7.6E-10 69.2 7.9 56 121-176 155-217 (235)
33 KOG2283 Clathrin coat dissocia 97.9 1.8E-05 3.9E-10 78.4 6.5 70 105-175 76-149 (434)
34 PHA02747 protein tyrosine phos 97.9 4.4E-05 9.6E-10 72.9 8.9 42 135-176 230-276 (312)
35 PHA02738 hypothetical protein; 97.8 6.8E-05 1.5E-09 71.9 8.5 42 135-176 228-274 (320)
36 KOG0792 Protein tyrosine phosp 97.5 0.00026 5.5E-09 75.4 8.0 69 108-176 1035-1110(1144)
37 KOG2386 mRNA capping enzyme, g 97.3 0.00031 6.8E-09 68.4 5.6 53 124-176 113-166 (393)
38 COG5599 PTP2 Protein tyrosine 97.2 0.00054 1.2E-08 63.1 5.6 54 101-158 184-242 (302)
39 KOG0790 Protein tyrosine phosp 96.9 0.00076 1.7E-08 66.0 3.3 45 132-176 449-501 (600)
40 COG2365 Protein tyrosine/serin 96.8 0.0038 8.2E-08 57.8 7.1 56 121-176 121-178 (249)
41 PF04179 Init_tRNA_PT: Initiat 96.6 0.0072 1.6E-07 60.5 8.0 60 103-162 340-404 (451)
42 KOG0789 Protein tyrosine phosp 96.3 0.012 2.6E-07 57.9 7.4 43 134-176 299-347 (415)
43 KOG0791 Protein tyrosine phosp 95.5 0.024 5.2E-07 54.6 5.3 42 135-176 288-334 (374)
44 KOG4228 Protein tyrosine phosp 93.9 0.06 1.3E-06 58.4 4.2 62 115-176 706-777 (1087)
45 PF14671 DSPn: Dual specificit 93.8 0.19 4.1E-06 42.5 6.2 66 110-176 39-112 (141)
46 PF03226 Yippee-Mis18: Yippee 93.2 0.052 1.1E-06 42.6 1.8 19 216-234 2-20 (96)
47 KOG0793 Protein tyrosine phosp 91.6 0.34 7.3E-06 50.4 5.6 42 136-177 929-976 (1004)
48 KOG4471 Phosphatidylinositol 3 90.8 0.37 8E-06 49.3 5.0 25 134-158 373-399 (717)
49 KOG4228 Protein tyrosine phosp 88.7 0.49 1.1E-05 51.6 4.3 54 123-176 1007-1065(1087)
50 cd01518 RHOD_YceA Member of th 81.0 7.6 0.00017 29.9 6.9 26 135-163 62-87 (101)
51 PF01641 SelR: SelR domain; I 78.2 1.7 3.7E-05 35.9 2.3 65 213-302 34-103 (124)
52 KOG1089 Myotubularin-related p 77.0 5 0.00011 41.3 5.7 32 127-158 335-369 (573)
53 PF06602 Myotub-related: Myotu 76.0 6.2 0.00013 38.4 6.0 20 133-152 229-249 (353)
54 PRK05508 methionine sulfoxide 74.1 3.4 7.3E-05 33.9 3.0 19 213-231 30-48 (119)
55 TIGR02300 FYDLN_acid conserved 72.7 2.1 4.6E-05 35.4 1.5 35 282-316 6-41 (129)
56 smart00714 LITAF Possible memb 72.1 1.8 3.9E-05 31.5 0.9 19 281-299 48-66 (67)
57 PF10571 UPF0547: Uncharacteri 70.5 2.7 5.8E-05 25.0 1.2 21 287-310 2-23 (26)
58 PRK00222 methionine sulfoxide 70.2 4.9 0.00011 34.0 3.2 19 213-231 40-58 (142)
59 PF09538 FYDLN_acid: Protein o 68.9 2.8 6.1E-05 33.8 1.4 33 282-314 6-39 (108)
60 PF13453 zf-TFIIB: Transcripti 68.3 3.5 7.7E-05 26.9 1.6 25 287-311 1-30 (41)
61 PF10601 zf-LITAF-like: LITAF- 66.0 3 6.5E-05 30.8 1.0 18 282-299 55-72 (73)
62 PRK01415 hypothetical protein; 65.4 14 0.00031 34.2 5.6 27 134-163 171-197 (247)
63 TIGR00357 methionine-R-sulfoxi 65.3 6.2 0.00014 33.1 2.9 19 213-231 37-55 (134)
64 PF15135 UPF0515: Uncharacteri 65.2 5.6 0.00012 36.6 2.8 38 282-319 152-192 (278)
65 PF03861 ANTAR: ANTAR domain; 64.7 11 0.00024 26.3 3.7 26 149-174 15-40 (56)
66 PF12773 DZR: Double zinc ribb 62.0 4 8.8E-05 27.6 1.0 32 283-314 10-42 (50)
67 PF11781 RRN7: RNA polymerase 60.0 5.4 0.00012 25.6 1.2 23 286-310 9-34 (36)
68 smart00400 ZnF_CHCC zinc finge 58.9 12 0.00025 26.0 2.9 32 138-171 23-54 (55)
69 PLN02160 thiosulfate sulfurtra 58.2 19 0.0004 29.9 4.6 28 133-163 79-107 (136)
70 cd01533 4RHOD_Repeat_2 Member 57.6 24 0.00052 27.5 5.0 25 135-162 67-91 (109)
71 PF11648 RIG-I_C-RD: C-termina 56.7 5.3 0.00011 32.9 1.0 26 282-307 57-83 (123)
72 PF09814 HECT_2: HECT-like Ubi 56.7 10 0.00022 36.5 3.2 19 215-233 105-123 (354)
73 PF13248 zf-ribbon_3: zinc-rib 55.9 4.4 9.4E-05 23.9 0.3 13 283-295 14-26 (26)
74 PRK00142 putative rhodanese-re 54.8 45 0.00097 31.9 7.1 27 134-163 171-197 (314)
75 PF13408 Zn_ribbon_recom: Reco 54.8 7.5 0.00016 26.8 1.4 21 282-302 2-22 (58)
76 PF13717 zinc_ribbon_4: zinc-r 54.3 7.1 0.00015 24.9 1.1 25 285-309 2-33 (36)
77 PF00581 Rhodanese: Rhodanese- 54.2 55 0.0012 24.9 6.5 58 105-163 34-98 (113)
78 PF10122 Mu-like_Com: Mu-like 51.5 5.3 0.00011 27.7 0.1 16 216-231 4-19 (51)
79 PF06750 DiS_P_DiS: Bacterial 51.2 11 0.00023 29.4 1.9 32 282-313 30-70 (92)
80 COG0607 PspE Rhodanese-related 51.1 18 0.0004 27.8 3.3 27 134-163 61-87 (110)
81 TIGR03865 PQQ_CXXCW PQQ-depend 50.5 33 0.00073 29.3 5.0 27 135-163 117-143 (162)
82 PF08996 zf-DNA_Pol: DNA Polym 50.3 5.7 0.00012 35.1 0.2 13 300-312 43-56 (188)
83 PF13240 zinc_ribbon_2: zinc-r 48.9 7.9 0.00017 22.2 0.6 21 287-310 1-22 (23)
84 TIGR00373 conserved hypothetic 48.6 7.1 0.00015 33.6 0.5 24 287-311 111-138 (158)
85 PF03966 Trm112p: Trm112p-like 47.4 9.3 0.0002 27.8 0.9 13 280-292 48-60 (68)
86 PF03604 DNA_RNApol_7kD: DNA d 47.2 9.4 0.0002 23.8 0.8 23 288-311 3-27 (32)
87 PF09297 zf-NADH-PPase: NADH p 47.2 8.7 0.00019 23.6 0.6 23 287-309 5-29 (32)
88 cd01528 RHOD_2 Member of the R 47.1 47 0.001 25.4 5.0 26 135-163 59-84 (101)
89 PF07282 OrfB_Zn_ribbon: Putat 46.9 9.7 0.00021 27.5 1.0 24 287-310 30-55 (69)
90 PF03119 DNA_ligase_ZBD: NAD-d 46.8 7.7 0.00017 23.4 0.3 10 287-296 1-10 (28)
91 cd01523 RHOD_Lact_B Member of 46.2 34 0.00073 26.1 4.1 26 135-163 62-87 (100)
92 TIGR02098 MJ0042_CXXC MJ0042 f 44.4 13 0.00027 23.6 1.1 13 283-295 23-35 (38)
93 COG3809 Uncharacterized protei 44.2 13 0.00027 28.3 1.2 23 286-308 2-28 (88)
94 PF13719 zinc_ribbon_5: zinc-r 43.8 13 0.00029 23.7 1.1 10 285-294 2-11 (37)
95 PRK00420 hypothetical protein; 43.1 14 0.00029 30.1 1.3 25 286-311 24-50 (112)
96 PF00096 zf-C2H2: Zinc finger, 42.6 3.9 8.4E-05 22.7 -1.4 19 217-235 1-19 (23)
97 PRK05550 bifunctional methioni 42.4 21 0.00046 33.7 2.7 19 213-231 33-51 (283)
98 PF03668 ATP_bind_2: P-loop AT 42.2 35 0.00075 32.3 4.1 17 136-152 244-260 (284)
99 cd01532 4RHOD_Repeat_1 Member 42.1 38 0.00082 25.6 3.7 28 134-162 50-77 (92)
100 cd01448 TST_Repeat_1 Thiosulfa 42.0 43 0.00094 26.5 4.2 26 136-163 81-106 (122)
101 PHA00626 hypothetical protein 41.8 16 0.00035 25.9 1.3 25 287-311 2-33 (59)
102 PF02673 BacA: Bacitracin resi 41.1 27 0.00058 32.6 3.1 27 142-170 159-185 (259)
103 COG2093 DNA-directed RNA polym 40.9 12 0.00027 27.0 0.7 18 286-303 19-36 (64)
104 PRK06266 transcription initiat 40.9 11 0.00024 33.0 0.6 23 146-168 21-43 (178)
105 smart00531 TFIIE Transcription 40.7 13 0.00029 31.4 1.0 17 282-298 120-136 (147)
106 cd01520 RHOD_YbbB Member of th 40.7 62 0.0013 26.1 5.0 30 132-163 83-113 (128)
107 PF01807 zf-CHC2: CHC2 zinc fi 40.4 32 0.0007 26.8 3.1 35 138-174 54-88 (97)
108 PF07295 DUF1451: Protein of u 40.0 20 0.00043 30.5 2.0 27 283-310 110-139 (146)
109 PRK12554 undecaprenyl pyrophos 39.0 29 0.00062 32.7 3.0 26 143-170 166-191 (276)
110 TIGR00753 undec_PP_bacA undeca 37.9 31 0.00067 32.1 3.0 26 143-170 160-185 (255)
111 COG1660 Predicted P-loop-conta 37.7 32 0.0007 32.3 3.1 17 136-152 245-261 (286)
112 COG4416 Com Mu-like prophage p 37.4 10 0.00022 26.6 -0.2 16 216-231 4-19 (60)
113 cd04445 DEP_PLEK1 DEP (Disheve 37.1 41 0.00089 26.6 3.1 37 132-173 22-59 (99)
114 PRK03681 hypA hydrogenase nick 37.0 27 0.00058 28.3 2.2 30 281-310 66-96 (114)
115 KOG3399 Predicted Yippee-type 36.8 14 0.00031 30.3 0.5 24 214-237 13-36 (122)
116 PRK14714 DNA polymerase II lar 36.5 25 0.00054 39.7 2.4 12 25-36 413-424 (1337)
117 PRK12380 hydrogenase nickel in 36.3 30 0.00064 28.0 2.3 29 281-310 66-95 (113)
118 COG0229 Conserved domain frequ 36.2 39 0.00086 28.4 3.1 19 213-231 39-57 (140)
119 PRK00281 undecaprenyl pyrophos 36.1 34 0.00074 32.0 3.0 26 143-170 164-189 (268)
120 cd01522 RHOD_1 Member of the R 35.8 77 0.0017 25.2 4.8 25 135-162 65-89 (117)
121 PRK05416 glmZ(sRNA)-inactivati 35.4 69 0.0015 30.3 5.0 32 121-152 224-263 (288)
122 PRK14018 trifunctional thiored 34.2 35 0.00077 35.1 3.0 20 212-231 414-433 (521)
123 TIGR00100 hypA hydrogenase nic 34.2 27 0.00059 28.3 1.8 28 282-310 67-95 (115)
124 TIGR00354 polC DNA polymerase, 33.8 23 0.00049 38.8 1.6 33 283-316 1010-1043(1095)
125 PRK08351 DNA-directed RNA poly 33.7 21 0.00045 25.8 0.9 17 287-303 17-33 (61)
126 smart00450 RHOD Rhodanese Homo 33.7 75 0.0016 23.2 4.2 25 136-163 58-82 (100)
127 COG1831 Predicted metal-depend 33.5 2.5E+02 0.0054 26.5 8.1 74 99-176 33-111 (285)
128 PRK11032 hypothetical protein; 33.5 29 0.00064 30.0 2.0 27 283-310 122-151 (160)
129 COG1675 TFA1 Transcription ini 33.3 19 0.00041 31.7 0.8 9 217-225 62-70 (176)
130 PRK11827 hypothetical protein; 33.1 24 0.00051 25.4 1.1 14 285-299 8-21 (60)
131 PF12760 Zn_Tnp_IS1595: Transp 32.7 20 0.00044 23.9 0.7 11 283-294 17-27 (46)
132 PRK00398 rpoP DNA-directed RNA 32.1 24 0.00052 23.5 1.0 11 285-295 21-31 (46)
133 COG5629 Predicted metal-bindin 32.0 24 0.00053 32.9 1.3 36 282-317 166-211 (321)
134 smart00659 RPOLCX RNA polymera 31.9 24 0.00052 23.6 0.9 12 284-295 18-29 (44)
135 PRK00432 30S ribosomal protein 31.7 26 0.00055 24.2 1.1 8 286-293 21-28 (50)
136 cd01534 4RHOD_Repeat_3 Member 31.5 56 0.0012 24.7 3.2 26 135-163 57-82 (95)
137 PF09419 PGP_phosphatase: Mito 31.3 34 0.00073 29.8 2.0 32 2-34 14-47 (168)
138 COG1645 Uncharacterized Zn-fin 31.0 25 0.00054 29.3 1.1 13 282-294 41-53 (131)
139 PHA02540 61 DNA primase; Provi 30.9 79 0.0017 30.7 4.7 37 135-174 52-89 (337)
140 PRK13130 H/ACA RNA-protein com 29.9 45 0.00097 23.6 2.1 20 287-311 7-27 (56)
141 COG3707 AmiR Response regulato 29.3 53 0.0012 29.3 2.9 22 153-174 151-172 (194)
142 PF13912 zf-C2H2_6: C2H2-type 28.5 9.6 0.00021 22.0 -1.3 20 217-236 2-21 (27)
143 cd01444 GlpE_ST GlpE sulfurtra 28.3 1.3E+02 0.0028 22.3 4.7 25 135-162 57-81 (96)
144 PF06044 DRP: Dam-replacing fa 28.2 14 0.00031 34.0 -0.8 25 277-301 23-48 (254)
145 TIGR02981 phageshock_pspE phag 28.0 1.3E+02 0.0029 23.4 4.8 24 136-162 60-83 (101)
146 PF04343 DUF488: Protein of un 27.9 2.3E+02 0.0049 22.7 6.3 17 20-36 6-22 (122)
147 COG2888 Predicted Zn-ribbon RN 27.7 22 0.00047 25.5 0.2 12 214-225 36-47 (61)
148 COG1933 Archaeal DNA polymeras 27.5 27 0.00058 32.1 0.8 35 285-322 167-202 (253)
149 COG1968 BacA Undecaprenyl pyro 27.3 65 0.0014 30.2 3.3 26 143-170 165-190 (270)
150 KOG0235 Phosphoglycerate mutas 27.0 2.5E+02 0.0053 25.5 6.9 53 112-170 129-186 (214)
151 PRK14714 DNA polymerase II lar 27.0 34 0.00073 38.7 1.5 29 284-313 1252-1281(1337)
152 cd01447 Polysulfide_ST Polysul 26.7 66 0.0014 24.3 2.8 27 133-162 59-86 (103)
153 PF03811 Zn_Tnp_IS1: InsA N-te 26.6 22 0.00048 22.8 0.0 10 214-223 27-36 (36)
154 PRK04023 DNA polymerase II lar 26.6 35 0.00075 37.7 1.5 32 283-315 1035-1067(1121)
155 PRK05320 rhodanese superfamily 26.4 1E+02 0.0022 28.5 4.5 27 134-163 175-201 (257)
156 PF14599 zinc_ribbon_6: Zinc-r 26.3 29 0.00063 25.0 0.6 30 282-311 27-58 (61)
157 PHA02325 hypothetical protein 26.0 37 0.0008 24.7 1.1 16 287-302 5-22 (72)
158 cd01526 RHOD_ThiF Member of th 25.9 90 0.0019 24.9 3.6 25 135-162 73-97 (122)
159 PF06677 Auto_anti-p27: Sjogre 25.6 38 0.00083 22.4 1.0 11 282-292 31-41 (41)
160 cd01529 4RHOD_Repeats Member o 25.4 81 0.0018 23.7 3.1 25 135-162 57-81 (96)
161 PRK05772 translation initiatio 25.3 1.4E+02 0.003 29.4 5.3 12 133-144 165-177 (363)
162 cd01443 Cdc25_Acr2p Cdc25 enzy 25.1 1.9E+02 0.0041 22.5 5.3 16 136-151 68-83 (113)
163 cd01525 RHOD_Kc Member of the 25.1 90 0.0019 23.7 3.3 26 134-162 65-90 (105)
164 TIGR00853 pts-lac PTS system, 25.0 53 0.0012 25.5 2.0 15 135-150 4-18 (95)
165 PRK14559 putative protein seri 24.5 59 0.0013 34.4 2.7 19 283-301 39-57 (645)
166 PF14205 Cys_rich_KTR: Cystein 24.3 42 0.0009 23.7 1.1 9 286-294 5-13 (55)
167 smart00355 ZnF_C2H2 zinc finge 23.9 14 0.00031 20.2 -1.2 20 217-236 1-20 (26)
168 PRK12495 hypothetical protein; 23.8 41 0.00088 30.6 1.2 12 283-294 56-67 (226)
169 TIGR02094 more_P_ylases alpha- 23.7 1.8E+02 0.004 30.5 6.2 36 135-173 161-199 (601)
170 COG2260 Predicted Zn-ribbon RN 23.6 61 0.0013 23.2 1.8 20 287-311 7-27 (59)
171 PF08772 NOB1_Zn_bind: Nin one 23.5 31 0.00067 25.8 0.3 12 283-294 22-33 (73)
172 TIGR03655 anti_R_Lar restricti 23.4 56 0.0012 22.5 1.6 12 287-298 3-14 (53)
173 KOG1812 Predicted E3 ubiquitin 23.1 43 0.00094 33.0 1.4 24 286-309 307-331 (384)
174 COG0794 GutQ Predicted sugar p 23.0 1.5E+02 0.0032 26.6 4.7 36 120-160 27-62 (202)
175 PRK10886 DnaA initiator-associ 23.0 1.8E+02 0.0039 25.8 5.2 36 117-155 23-59 (196)
176 PRK00162 glpE thiosulfate sulf 22.9 1.7E+02 0.0037 22.5 4.6 27 134-163 58-84 (108)
177 COG4738 Predicted transcriptio 22.7 59 0.0013 26.5 1.8 21 143-163 23-43 (124)
178 PRK06835 DNA replication prote 22.6 43 0.00094 32.3 1.2 24 283-309 96-119 (329)
179 PRK10287 thiosulfate:cyanide s 22.5 1.8E+02 0.0039 22.9 4.6 15 136-151 62-76 (104)
180 PF07754 DUF1610: Domain of un 22.5 49 0.0011 19.3 0.9 9 284-292 15-23 (24)
181 PF13894 zf-C2H2_4: C2H2-type 22.1 13 0.00029 20.1 -1.5 19 217-235 1-19 (24)
182 PF10302 DUF2407: DUF2407 ubiq 22.0 42 0.00092 26.4 0.9 10 135-144 86-95 (97)
183 PRK14715 DNA polymerase II lar 21.9 49 0.0011 37.7 1.6 31 283-315 1540-1571(1627)
184 COG3478 Predicted nucleic-acid 21.6 45 0.00097 24.3 0.8 11 284-294 3-13 (68)
185 PF08271 TF_Zn_Ribbon: TFIIB z 21.5 43 0.00094 21.9 0.7 17 281-297 15-31 (43)
186 COG1571 Predicted DNA-binding 21.5 44 0.00096 33.3 1.1 30 282-311 347-377 (421)
187 PRK06036 translation initiatio 21.4 1.5E+02 0.0032 28.8 4.6 16 133-148 146-162 (339)
188 PF09151 DUF1936: Domain of un 21.3 47 0.001 20.6 0.8 10 286-295 2-11 (36)
189 PRK14890 putative Zn-ribbon RN 21.3 36 0.00078 24.4 0.3 11 215-225 35-45 (59)
190 cd01519 RHOD_HSP67B2 Member of 21.1 1.2E+02 0.0026 23.0 3.3 25 136-163 68-92 (106)
191 PF14803 Nudix_N_2: Nudix N-te 21.0 40 0.00086 21.3 0.4 9 287-295 2-10 (34)
192 COG1228 HutI Imidazolonepropio 21.0 3.1E+02 0.0068 27.2 7.0 66 128-194 299-378 (406)
193 TIGR01460 HAD-SF-IIA Haloacid 20.8 2.3E+02 0.0051 25.4 5.7 54 121-175 16-79 (236)
194 smart00834 CxxC_CXXC_SSSS Puta 20.8 46 0.00099 21.1 0.7 13 283-295 24-36 (41)
195 PF06174 DUF987: Protein of un 20.6 42 0.00092 24.2 0.5 12 295-306 26-37 (66)
196 COG1054 Predicted sulfurtransf 20.5 4.4E+02 0.0095 25.3 7.4 36 121-158 156-194 (308)
197 PRK03824 hypA hydrogenase nick 20.5 71 0.0015 26.6 2.0 10 283-292 68-77 (135)
198 PF04438 zf-HIT: HIT zinc fing 20.5 48 0.001 20.3 0.7 13 283-295 11-23 (30)
199 COG3791 Uncharacterized conser 20.3 75 0.0016 26.3 2.1 13 283-295 67-79 (133)
200 PRK00564 hypA hydrogenase nick 20.2 67 0.0015 26.1 1.7 28 282-310 68-97 (117)
201 KOG3092 Casein kinase II, beta 20.2 52 0.0011 29.4 1.1 13 280-292 129-141 (216)
202 PF02302 PTS_IIB: PTS system, 20.1 1.1E+02 0.0024 22.7 2.8 13 136-148 1-13 (90)
203 KOG4784 Uncharacterized conser 20.1 65 0.0014 31.2 1.8 35 265-302 164-201 (348)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.95 E-value=3.4e-28 Score=204.13 Aligned_cols=133 Identities=31% Similarity=0.445 Sum_probs=116.5
Q ss_pred CccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020333 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
|++|.|+||+|+.+++.+.+.|+++||++||||+....
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~------------------------------------------ 38 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP------------------------------------------ 38 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC------------------------------------------
Confidence 89999999999999999999999999999999976210
Q ss_pred CCCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHc
Q 020333 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~ 160 (327)
. . ...++.|+++|+.|....++.+.|+.+++||+..+.+| +|||||.+|+|||+++++||||..+
T Consensus 39 --~--~----------~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 39 --N--L----------NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred --C--C----------CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 0 0 01357889999999888889999999999999999877 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccc--cCCCCccccCccc
Q 020333 161 QLSSEGALESLRQSCDS--YNRGEKIDSSKFG 190 (327)
Q Consensus 161 ~~s~~~A~~~vr~~rp~--~~~g~~~~~~~~~ 190 (327)
|+++++|+++|+++||. ++.+|..+|..|+
T Consensus 105 ~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e 136 (138)
T smart00195 105 NLSLNDAYDFVKDRRPIISPNFGFLRQLIEYE 136 (138)
T ss_pred CCCHHHHHHHHHHHCCccCCCHhHHHHHHHHh
Confidence 99999999999999994 4567777776654
No 2
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.95 E-value=1.1e-27 Score=215.65 Aligned_cols=126 Identities=28% Similarity=0.499 Sum_probs=113.0
Q ss_pred CCccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCC
Q 020333 1 MPYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGS 80 (327)
Q Consensus 1 ~p~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
+|.+|+|+||||+..++.+.+.|++.||++||||+...
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl------------------------------------------ 208 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL------------------------------------------ 208 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCC------------------------------------------
Confidence 58999999999999999999999999999999998732
Q ss_pred CCCCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHH
Q 020333 81 RSCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT 159 (327)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~ 159 (327)
|+.+. ..-.+.|++||+.|+..+++.+.|++++.||++++.+. .|||||.+|+|||+||++||||++
T Consensus 209 -----pn~fe-------~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 209 -----PNNFE-------NNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred -----cchhh-------cCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 22221 23368899999999999999999999999999999987 999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhccccCC
Q 020333 160 EQLSSEGALESLRQSCDSYNR 180 (327)
Q Consensus 160 ~~~s~~~A~~~vr~~rp~~~~ 180 (327)
..+++.+|+++|+.++..+.+
T Consensus 277 l~lslndAyd~Vk~kksnisP 297 (343)
T KOG1717|consen 277 LNLSLNDAYDFVKHKKSNISP 297 (343)
T ss_pred hccchhhHHHHHHHhccCCCC
Confidence 999999999999999875444
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=2.3e-27 Score=200.64 Aligned_cols=134 Identities=29% Similarity=0.352 Sum_probs=118.2
Q ss_pred ccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020333 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
++|.++|||++-..|.|...|+++|||+|||++.+.
T Consensus 18 SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-------------------------------------------- 53 (198)
T KOG1718|consen 18 SQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-------------------------------------------- 53 (198)
T ss_pred hhcCcceeEeccccccCHHHHHhcCceEEEEcccCC--------------------------------------------
Confidence 689999999988899999999999999999997621
Q ss_pred CCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHcC
Q 020333 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~ 161 (327)
|+... -++.|+.||+.|.+...+.+||+.+.+.|+....+| ++||||.||+|||+++|+||||+..+
T Consensus 54 ---pn~~l---------~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~ 121 (198)
T KOG1718|consen 54 ---PNTSL---------PDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHC 121 (198)
T ss_pred ---CCccC---------CCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHcc
Confidence 11110 156789999999999999999999999999987655 99999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcc--ccCCCCccccCcccCC
Q 020333 162 LSSEGALESLRQSCD--SYNRGEKIDSSKFGAD 192 (327)
Q Consensus 162 ~s~~~A~~~vr~~rp--~~~~g~~~~~~~~~~~ 192 (327)
+++.||+.++|++|| .+|.||..|+..|+.+
T Consensus 122 msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~q 154 (198)
T KOG1718|consen 122 MSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQ 154 (198)
T ss_pred chHHHHHHHHHhhCceeCCCccHHHHHHHHHHH
Confidence 999999999999999 6788999998776654
No 4
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=7.6e-26 Score=212.64 Aligned_cols=136 Identities=35% Similarity=0.453 Sum_probs=118.3
Q ss_pred CccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020333 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
+.+|.|+||+|+...+.+.+.|.++||+||+|+......
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~----------------------------------------- 113 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPN----------------------------------------- 113 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCCc-----------------------------------------
Confidence 468999999999999999999999999999999763200
Q ss_pred CCCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHc
Q 020333 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~ 160 (327)
+. . .....+.|+.|++.|.+..+|.++|+++++||+.++.+| +|||||.+|+|||+|+++||||+.+
T Consensus 114 ----~~-~-------~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 114 ----PR-F-------LKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred ----cc-c-------ccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 00 0 011157899999999999999999999999999999987 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcc--ccCCCCccccCccc
Q 020333 161 QLSSEGALESLRQSCD--SYNRGEKIDSSKFG 190 (327)
Q Consensus 161 ~~s~~~A~~~vr~~rp--~~~~g~~~~~~~~~ 190 (327)
+|++++|+++|+++|| .+|.||..|+..|+
T Consensus 182 ~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e 213 (285)
T KOG1716|consen 182 GLSLEDAYELVKSRRPIISPNFGFLRQLLEFE 213 (285)
T ss_pred CCCHHHHHHHHHHhCCccCCCHHHHHHHHHHH
Confidence 9999999999999999 46788888776554
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.93 E-value=3.1e-25 Score=185.60 Aligned_cols=134 Identities=34% Similarity=0.436 Sum_probs=114.1
Q ss_pred CccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020333 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
+++|.|+||+|+.+++.|.+.|+++||++|||+++...
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~------------------------------------------ 39 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVP------------------------------------------ 39 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCC------------------------------------------
Confidence 58999999999999999999999999999999987320
Q ss_pred CCCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHc
Q 020333 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~ 160 (327)
. ......++.|+++|+.|.+..++...++.+++||+...++| +|||||.+|+|||+++++||||...
T Consensus 40 --~----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 40 --N----------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred --C----------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 0 00112367889999999998888889999999999998876 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcccc--CCCCccccCcc
Q 020333 161 QLSSEGALESLRQSCDSY--NRGEKIDSSKF 189 (327)
Q Consensus 161 ~~s~~~A~~~vr~~rp~~--~~g~~~~~~~~ 189 (327)
++++++|+++||++||.+ +.+|..++..|
T Consensus 108 ~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~ 138 (139)
T cd00127 108 GLSLREAYEFVKSRRPIISPNAGFMRQLKEY 138 (139)
T ss_pred CCCHHHHHHHHHHHCCccCCCHHHHHHHHHh
Confidence 999999999999999954 44565555443
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.91 E-value=2.8e-25 Score=184.96 Aligned_cols=125 Identities=33% Similarity=0.455 Sum_probs=105.7
Q ss_pred eEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 020333 9 LFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTK 88 (327)
Q Consensus 9 LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (327)
||||+..++. ...|+++||++|||++..... +
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~---------------------------------------------~-- 32 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPN---------------------------------------------P-- 32 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSST---------------------------------------------S--
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcC---------------------------------------------c--
Confidence 7999999999 999999999999999873200 0
Q ss_pred hhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHcCCCHHHH
Q 020333 89 LLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGA 167 (327)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A 167 (327)
. .....++.++.+|+.|....++..+|+.+++||+++.++| +|||||.+|+|||+++++||||..++|++++|
T Consensus 33 ~------~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A 106 (133)
T PF00782_consen 33 Y------FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEA 106 (133)
T ss_dssp H------HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHH
T ss_pred h------hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHH
Confidence 0 0122367899999999899999999999999999998876 99999999999999999999999999999999
Q ss_pred HHHHHhhccccCC--CCccccC
Q 020333 168 LESLRQSCDSYNR--GEKIDSS 187 (327)
Q Consensus 168 ~~~vr~~rp~~~~--g~~~~~~ 187 (327)
+++|+++||..++ ++..+|.
T Consensus 107 ~~~v~~~rp~~~~~~~~~~~L~ 128 (133)
T PF00782_consen 107 IEYVRSRRPQINPNPSFIRQLY 128 (133)
T ss_dssp HHHHHHHSTTSTHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHH
Confidence 9999999995543 3444443
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.85 E-value=4e-21 Score=195.76 Aligned_cols=122 Identities=26% Similarity=0.392 Sum_probs=103.2
Q ss_pred CccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020333 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
+++|.|+||||+...+.|.+.|+++||++|||++.+. ..
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-------------------~~---------------------- 133 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEF-------------------DG---------------------- 133 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccc-------------------cc----------------------
Confidence 3689999999999999999999999999999997521 00
Q ss_pred CCCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHH-
Q 020333 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT- 159 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~- 159 (327)
. +.. ....++.|+++|+.|...++ .++|+++++||++.+++| +|||||.+|+|||+++++||||.+
T Consensus 134 --~-~~~--------~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 134 --L-DWS--------LTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred --c-ccc--------ccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 0 000 01125788999999987765 577999999999999976 999999999999999999999976
Q ss_pred cCCCHHHHHHHHHhhcc
Q 020333 160 EQLSSEGALESLRQSCD 176 (327)
Q Consensus 160 ~~~s~~~A~~~vr~~rp 176 (327)
.++++++|+++||++||
T Consensus 202 ~~~~~~eA~~~vr~~Rp 218 (547)
T PRK12361 202 PDLTVEEVLQQIKQIRK 218 (547)
T ss_pred cCCCHHHHHHHHHHHCC
Confidence 58999999999999999
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.76 E-value=7.2e-18 Score=146.53 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=65.0
Q ss_pred cceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhC----C-cEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 020333 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE----G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (327)
Q Consensus 100 ~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~----g-~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~~ 174 (327)
.++.++.+|+.|...+. .+.+...++++++.+.. | +|+|||.+|+|||++++++|||...++++++|+++||++
T Consensus 60 ~gi~~~~~p~~D~~~P~-~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 60 NGIEVHDWPFDDGAPPP-KAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREK 138 (166)
T ss_pred CCCEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36788889998876554 33467778888877643 5 999999999999999999999999889999999999999
Q ss_pred ccc
Q 020333 175 CDS 177 (327)
Q Consensus 175 rp~ 177 (327)
||.
T Consensus 139 R~~ 141 (166)
T PTZ00242 139 RKG 141 (166)
T ss_pred CCC
Confidence 993
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.74 E-value=9.4e-18 Score=140.56 Aligned_cols=123 Identities=23% Similarity=0.424 Sum_probs=100.9
Q ss_pred cccCCeEecChhh-hhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020333 4 LVREHLFIGNISD-AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 4 ~I~~~LylG~~~~-a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
+|.+.+.+|-++- ..+.+.+++.|+..||.+.++.+ +.
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE-----------------~~------------------------ 65 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYE-----------------LL------------------------ 65 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchh-----------------hh------------------------
Confidence 4566777776632 36778899999999999987321 10
Q ss_pred CCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHcC
Q 020333 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~ 161 (327)
.+.. .-+..+++++.||..|.-...-.+.+.++++||+....-| .|+|||.||.+||+|++++|||...+
T Consensus 66 --a~s~-------~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~ 136 (183)
T KOG1719|consen 66 --APSN-------LWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKN 136 (183)
T ss_pred --hhhH-------HHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcC
Confidence 0111 1134588999999999888777888999999999988878 89999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcc
Q 020333 162 LSSEGALESLRQSCD 176 (327)
Q Consensus 162 ~s~~~A~~~vr~~rp 176 (327)
|++++|+++||++||
T Consensus 137 wtpe~A~~~vr~iRp 151 (183)
T KOG1719|consen 137 WTPEAAVEHVRKIRP 151 (183)
T ss_pred CCHHHHHHHHHhcCc
Confidence 999999999999999
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.70 E-value=1.3e-16 Score=144.42 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=66.7
Q ss_pred cceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Q 020333 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCDS 177 (327)
Q Consensus 100 ~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~~rp~ 177 (327)
.++.++++|+.|...++ .+.+++++++|+..++.| +|+|||.+|+|||++++++|||. .|+++++|+++||++||.
T Consensus 136 ~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPg 212 (241)
T PTZ00393 136 AGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKG 212 (241)
T ss_pred cCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCC
Confidence 36777888988877665 455788889999888877 99999999999999999999997 699999999999999993
No 11
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.54 E-value=2.6e-14 Score=125.75 Aligned_cols=77 Identities=31% Similarity=0.474 Sum_probs=67.8
Q ss_pred cceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHcC-CCHHHHHHHHHhhccc
Q 020333 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ-LSSEGALESLRQSCDS 177 (327)
Q Consensus 100 ~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~-~s~~~A~~~vr~~rp~ 177 (327)
.+..++.+|+.|...+++ +.++++++||+.++++| +|+|||.+|+|||+||++||||...+ +..++|+.+++.+||.
T Consensus 71 ~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~ 149 (180)
T COG2453 71 DGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG 149 (180)
T ss_pred CCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc
Confidence 467788999999999987 66999999999999998 99999999999999999999999954 5677777778888773
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.51 E-value=1.5e-13 Score=120.99 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=69.2
Q ss_pred CcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Q 020333 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCDS 177 (327)
Q Consensus 99 ~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~~rp~ 177 (327)
..++.++.+++.|...+++.. +.+.++.++.+++.|+|.|||.+|.+||+++++||||+.+||++.||++.||..||.
T Consensus 113 ~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG 190 (225)
T KOG1720|consen 113 DAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPG 190 (225)
T ss_pred ccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCc
Confidence 357889999999988777554 667788888888866999999999999999999999999999999999999999993
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.41 E-value=1.4e-12 Score=111.94 Aligned_cols=106 Identities=20% Similarity=0.311 Sum_probs=68.0
Q ss_pred hhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhc
Q 020333 17 AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTKLLYSLEYA 96 (327)
Q Consensus 17 a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (327)
..|++.|++.|++.||.+.+ ..|+.++.++... ..+
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~-----------------~~EL~~l~Vp~L~--------------------------~~~- 96 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLT-----------------DHELARLGVPDLG--------------------------EAA- 96 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S------------------HHHHHHTT-TTHH--------------------------HHH-
T ss_pred HHHHHHHHHCCCCEEEEeCc-----------------HHHHHHcCCccHH--------------------------HHH-
Confidence 56777899999999999976 4577766543211 122
Q ss_pred cCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHc-CCCHHHHH
Q 020333 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGAL 168 (327)
Q Consensus 97 ~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~-~~s~~~A~ 168 (327)
...++.++++||.|...+++.. +-+.++.|...+++| +|+|||.+|++||++|++.+|+... .+++++|+
T Consensus 97 -~~~Gi~~~h~PI~D~~aPd~~~-~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 97 -QARGIAWHHLPIPDGSAPDFAA-AWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -HHTT-EEEE----TTS---HHH-HHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred -HHcCCEEEecCccCCCCCCHHH-HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 2346788899999998888655 446778888888888 9999999999999999999888753 48999986
No 14
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.31 E-value=2.8e-11 Score=101.72 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=82.0
Q ss_pred CccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020333 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
..+|.+.+|+++.....|++.|+++||+.|||++...+ .
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E-----------------~------------------------ 40 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDRE-----------------E------------------------ 40 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCC-----------------C------------------------
Confidence 35899999999999999999999999999999986310 0
Q ss_pred CCCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHHcC
Q 020333 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (327)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~~~~ 161 (327)
...|.... +.......++.|++||+..... + ........++++. ..++||+||.+|. ||+++.+.++.. .|
T Consensus 41 -~~~p~~~~--~~~~a~~~gl~y~~iPv~~~~~-~-~~~v~~f~~~~~~--~~~pvL~HC~sG~-Rt~~l~al~~~~-~g 111 (135)
T TIGR01244 41 -ESQPDFAQ--IKAAAEAAGVTYHHQPVTAGDI-T-PDDVETFRAAIGA--AEGPVLAYCRSGT-RSSLLWGFRQAA-EG 111 (135)
T ss_pred -CCCCCHHH--HHHHHHHCCCeEEEeecCCCCC-C-HHHHHHHHHHHHh--CCCCEEEEcCCCh-HHHHHHHHHHHH-cC
Confidence 00111100 0000112467888999875332 1 1123333333432 2479999999999 998777665554 79
Q ss_pred CCHHHHHHHHHhh
Q 020333 162 LSSEGALESLRQS 174 (327)
Q Consensus 162 ~s~~~A~~~vr~~ 174 (327)
++.+++++..+..
T Consensus 112 ~~~~~i~~~~~~~ 124 (135)
T TIGR01244 112 VPVEEIVRRAQAA 124 (135)
T ss_pred CCHHHHHHHHHHc
Confidence 9999999988754
No 15
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.28 E-value=1.4e-11 Score=106.80 Aligned_cols=119 Identities=12% Similarity=0.218 Sum_probs=71.5
Q ss_pred ccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020333 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
..|.++||-|+.+.+.++.+|+++|+++||+|....
T Consensus 8 ~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~-------------------------------------------- 43 (164)
T PF03162_consen 8 GMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEP-------------------------------------------- 43 (164)
T ss_dssp EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---------------------------------------------
T ss_pred cCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCC--------------------------------------------
Confidence 368999999999999999999999999999997621
Q ss_pred CCCCchhhhhhhhccCCcceEEEEEecCCCCCC---cHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHH
Q 020333 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESE---NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~---~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~~ 159 (327)
.+.... + .....++...++++...... -..+.+.++++.|-+. ++.+|||||..|..|+++|+++|- +.
T Consensus 44 --~~~~~~---~-f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lR-k~ 115 (164)
T PF03162_consen 44 --PSQDFL---E-FAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLR-KL 115 (164)
T ss_dssp ----HHHH---H-HHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHH-HH
T ss_pred --CCHHHH---H-HHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHH-HH
Confidence 000000 0 01123566677777654431 1233344455444222 245999999999999999999999 67
Q ss_pred cCCCHHHHHHHHHh
Q 020333 160 EQLSSEGALESLRQ 173 (327)
Q Consensus 160 ~~~s~~~A~~~vr~ 173 (327)
+||++..|++..+.
T Consensus 116 Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 116 QGWSLSSIFDEYRR 129 (164)
T ss_dssp TTB-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 89999999998875
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.11 E-value=4.7e-10 Score=92.40 Aligned_cols=91 Identities=21% Similarity=0.358 Sum_probs=64.5
Q ss_pred ceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHh--CC-cEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhcc-
Q 020333 101 KLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCD- 176 (327)
Q Consensus 101 ~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~--~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~~rp- 176 (327)
++..+-.|.+|...+. .+..+.-++.+....+ .| .|.|||.+|++|++.+++.-|+.. ||.+++|++++|++|.
T Consensus 62 GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krrg 139 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRRG 139 (173)
T ss_pred CceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhhc
Confidence 5566666766654332 3334444444443333 35 899999999999999998888765 9999999999999988
Q ss_pred ccCCCCccccCcccCCC
Q 020333 177 SYNRGEKIDSSKFGADP 193 (327)
Q Consensus 177 ~~~~g~~~~~~~~~~~~ 193 (327)
.+|..+...|++|.+..
T Consensus 140 a~n~kql~~lekyrpk~ 156 (173)
T KOG2836|consen 140 AINSKQLLYLEKYRPKM 156 (173)
T ss_pred cccHHHHHHHHHhCccc
Confidence 67776666666665543
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.03 E-value=8.4e-10 Score=89.46 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=55.8
Q ss_pred ccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020333 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
.+|.+.+|+++.....++..|++.||++|||++.+.+ -
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E-----------------~------------------------- 40 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGE-----------------E------------------------- 40 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTS-----------------T-------------------------
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCC-----------------C-------------------------
Confidence 5799999999999999999999999999999986210 0
Q ss_pred CCCCchhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHH
Q 020333 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIIT 153 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~ 153 (327)
...|. ...+.......++.|++||+..... -.+.+....+.++.. .++||+||..|. ||.++.+
T Consensus 41 ~~qp~--~~~~~~~a~~~Gl~y~~iPv~~~~~--~~~~v~~f~~~l~~~--~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 41 PGQPS--SAEEAAAAEALGLQYVHIPVDGGAI--TEEDVEAFADALESL--PKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp TT-T---HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHHHHHTT--TTSEEEE-SCSH-HHHHHHH
T ss_pred CCCCC--HHHHHHHHHHcCCeEEEeecCCCCC--CHHHHHHHHHHHHhC--CCCEEEECCCCh-hHHHHHH
Confidence 00010 1112222345688899999975331 123333333333321 469999999995 9976643
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.96 E-value=4.5e-09 Score=82.62 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=51.9
Q ss_pred EecCCCCCCcHHHhHHHHHHHHHHHHh----CCcEEEEcCCCCchhHHHHHHHHHHHc------CCCHHHHHHHHHhhcc
Q 020333 107 VPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQSCD 176 (327)
Q Consensus 107 ipi~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~~G~sRS~tvv~AYLm~~~------~~s~~~A~~~vr~~rp 176 (327)
.++.|...++....|.+.++.++.... .++|+|||.+|+|||++++++|+|... ..++.+++..+|..||
T Consensus 8 ~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~ 87 (105)
T smart00404 8 TGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRP 87 (105)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhh
Confidence 344444333333455556666655543 459999999999999999999998753 3688899999999998
Q ss_pred c
Q 020333 177 S 177 (327)
Q Consensus 177 ~ 177 (327)
.
T Consensus 88 ~ 88 (105)
T smart00404 88 G 88 (105)
T ss_pred h
Confidence 4
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.96 E-value=4.5e-09 Score=82.62 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=51.9
Q ss_pred EecCCCCCCcHHHhHHHHHHHHHHHHh----CCcEEEEcCCCCchhHHHHHHHHHHHc------CCCHHHHHHHHHhhcc
Q 020333 107 VPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQSCD 176 (327)
Q Consensus 107 ipi~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~~G~sRS~tvv~AYLm~~~------~~s~~~A~~~vr~~rp 176 (327)
.++.|...++....|.+.++.++.... .++|+|||.+|+|||++++++|+|... ..++.+++..+|..||
T Consensus 8 ~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~ 87 (105)
T smart00012 8 TGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRP 87 (105)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhh
Confidence 344444333333455556666655543 459999999999999999999998753 3688899999999998
Q ss_pred c
Q 020333 177 S 177 (327)
Q Consensus 177 ~ 177 (327)
.
T Consensus 88 ~ 88 (105)
T smart00012 88 G 88 (105)
T ss_pred h
Confidence 4
No 20
>PLN02727 NAD kinase
Probab=98.76 E-value=3.9e-08 Score=103.24 Aligned_cols=111 Identities=8% Similarity=0.142 Sum_probs=77.5
Q ss_pred CeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 020333 8 HLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPT 87 (327)
Q Consensus 8 ~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (327)
.+|.++...+.++++|.+.||++|||++.+.+ ...+
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E-----------------------------------------~~q~--- 297 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIV-----------------------------------------KDNF--- 297 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCc-----------------------------------------CCCc---
Confidence 58999999999999999999999999987310 0000
Q ss_pred hhhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHH
Q 020333 88 KLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (327)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~ 165 (327)
....++......++.|++||+.+..... .+.++++.+++++. ...+||+||..|..|++++++.|+.+..+....
T Consensus 298 -~~~ee~eAae~~GL~yVhIPVs~~~apt-~EqVe~fa~~l~~s-lpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~ 372 (986)
T PLN02727 298 -YQAAVDDAISSGKIEVVKIPVEVRTAPS-AEQVEKFASLVSDS-SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAER 372 (986)
T ss_pred -hhHHHHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHhh-cCCCEEEECCCCCchHHHHHHHHHHHHcccchh
Confidence 0111222233457889999987655443 23355556666331 256999999999999999999999987665433
No 21
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=2e-07 Score=75.52 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=78.7
Q ss_pred ccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020333 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
.+|.+.|++++.....|+..++.+|++.|||-+.+-+ .
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgE----e-------------------------------------- 41 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGE----E-------------------------------------- 41 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCC----C--------------------------------------
Confidence 5789999999999999999999999999999986320 0
Q ss_pred CCCCchhhhhhhhccCCcceEEEEEecCCCC-CCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHHcC
Q 020333 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDME-SENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~-~~~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~~~~ 161 (327)
.--|... .+.......++.|.+||+.... .++-.+.|..+++ ++ +|+||.||..| .||.++=..-. ...|
T Consensus 42 ~~QP~~~--~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~---ea--egPVlayCrsG-tRs~~ly~~~~-~~~g 112 (130)
T COG3453 42 PGQPGFA--AIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALD---EA--EGPVLAYCRSG-TRSLNLYGLGE-LDGG 112 (130)
T ss_pred CCCCChH--HHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHH---Hh--CCCEEeeecCC-chHHHHHHHHH-HhcC
Confidence 0011111 1222334557889999987633 3322222333322 22 68999999999 68855422222 4568
Q ss_pred CCHHHHHHHHHh
Q 020333 162 LSSEGALESLRQ 173 (327)
Q Consensus 162 ~s~~~A~~~vr~ 173 (327)
|+.++..++-+.
T Consensus 113 m~~de~~a~g~a 124 (130)
T COG3453 113 MSRDEIEALGQA 124 (130)
T ss_pred CCHHHHHHHHHh
Confidence 999998877554
No 22
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.63 E-value=1.5e-07 Score=85.40 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=54.4
Q ss_pred cceEEEEEe-cCCCCCCcHHHhHHHHHHHHHHHHh---CCcEEEEcCCCCchhHHHHHHHHHHHc-----CCCHHHHHHH
Q 020333 100 LKLVRMTVP-IRDMESENLLDYLDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMRTE-----QLSSEGALES 170 (327)
Q Consensus 100 ~~~~~~~ip-i~D~~~~~l~~~~~~~~~fI~~~~~---~g~VLVHC~~G~sRS~tvv~AYLm~~~-----~~s~~~A~~~ 170 (327)
..+.++++. ..|...+.....|.+.++.++.... .++|+|||.+|+|||+++++++++... .+++.+|+..
T Consensus 128 ~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 128 RTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred eEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345555554 3343333333445555555555543 459999999999999999999976543 5899999999
Q ss_pred HHhhcc
Q 020333 171 LRQSCD 176 (327)
Q Consensus 171 vr~~rp 176 (327)
||+.|+
T Consensus 208 iR~~R~ 213 (231)
T cd00047 208 LRSQRP 213 (231)
T ss_pred HHhccc
Confidence 999998
No 23
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.51 E-value=6.2e-07 Score=75.66 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=51.4
Q ss_pred cHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHH-HHHHHHHcCCCHHHHHHHHHhhcc
Q 020333 116 NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII-TAYLMRTEQLSSEGALESLRQSCD 176 (327)
Q Consensus 116 ~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv-~AYLm~~~~~s~~~A~~~vr~~rp 176 (327)
.-..|.+..++|+++.-+.-++||||.+|+|||++++ +|-|.....++-.+..+.+|..+|
T Consensus 75 p~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp 136 (172)
T COG5350 75 PGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSP 136 (172)
T ss_pred CCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCc
Confidence 3467899999999988878899999999999998876 334455668899999999999998
No 24
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.50 E-value=3.7e-07 Score=84.42 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHHHh--CCcEEEEcCCCCchhHHHHHHHHHHH-----cCCCHHHHHHHHHhhccc
Q 020333 119 DYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCDS 177 (327)
Q Consensus 119 ~~~~~~~~fI~~~~~--~g~VLVHC~~G~sRS~tvv~AYLm~~-----~~~s~~~A~~~vr~~rp~ 177 (327)
..|.+.+..++.... .++|+|||.+|+|||+++++++++.. ..+++.+++..||+.|+.
T Consensus 176 ~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 241 (258)
T smart00194 176 KSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG 241 (258)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence 334444555554444 46999999999999999999987743 468999999999999993
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.48 E-value=1.4e-06 Score=75.26 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHH
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALE 169 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~ 169 (327)
++||+||.+|.-|++.++ |.|+.-.|.+.++.++
T Consensus 125 ~p~l~HC~aGKDRTG~~~-alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 125 GPVLFHCTAGKDRTGVVA-ALLLSLLGVPDEDIIA 158 (164)
T ss_dssp --EEEE-SSSSSHHHHHH-HHHHHHTT--HHHHHH
T ss_pred CcEEEECCCCCccHHHHH-HHHHHHcCCCHHHHHH
Confidence 699999999999997665 4555667998887764
No 26
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.10 E-value=2.7e-05 Score=70.43 Aligned_cols=117 Identities=13% Similarity=0.225 Sum_probs=79.4
Q ss_pred ccccCCeEecChhhhhCHHHHhhCCCcEEEEcccCCccccccccccccCCChhhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020333 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~IVnl~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
+-|.++||-++++...++.+|+.++.+.||.++.+. .|
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-------------yp----------------------------- 98 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-------------YP----------------------------- 98 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCC-------------CC-----------------------------
Confidence 357889999999999999999999999999998731 01
Q ss_pred CCCCchhhhhhhhccCCcceEEEEEecCCCC------CCcHHHh-HHHHHHHHHHHHhC-C-cEEEEcCCCCchhHHHHH
Q 020333 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDME------SENLLDY-LDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIIT 153 (327)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ipi~D~~------~~~l~~~-~~~~~~fI~~~~~~-g-~VLVHC~~G~sRS~tvv~ 153 (327)
..+..| ....++.+.+|-+...- ..++.++ +..++.+ .+.. + ++||||..|..|+++|+.
T Consensus 99 ---~~nl~f-----~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~---lld~~N~P~Lihc~rGkhRtg~lVg 167 (249)
T KOG1572|consen 99 ---EENLNF-----LESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKV---LLDKRNYPILIHCKRGKHRTGCLVG 167 (249)
T ss_pred ---hHHHHH-----HHhcCceEEEEecccccccccCCCCCChHHHHHHHHHH---HhcccCCceEEecCCCCcchhhhHH
Confidence 111111 12235666666655333 3333333 4444444 3343 3 999999999999999987
Q ss_pred HHHHHHcCCCHHHHHHHHHh
Q 020333 154 AYLMRTEQLSSEGALESLRQ 173 (327)
Q Consensus 154 AYLm~~~~~s~~~A~~~vr~ 173 (327)
..- +.++|++...++.-+.
T Consensus 168 clR-klq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 168 CLR-KLQNWSLSSILDEYLR 186 (249)
T ss_pred HHH-HHhccchhHHHHHHHH
Confidence 755 6678988877765443
No 27
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.09 E-value=1.4e-05 Score=76.07 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=35.8
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhcc
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCD 176 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~A~~~vr~~rp 176 (327)
++|+|||.+|+|||+++++..++. ...+++.+++..+|+.|+
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~ 276 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRH 276 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Confidence 699999999999999999877554 224688899999999998
No 28
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.05 E-value=1.5e-05 Score=79.49 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=51.6
Q ss_pred eEEEEEe-cCCCCCCcHHHhHHHHHHHHHHHHhC----------CcEEEEcCCCCchhHHHHHHHHHHHcC-CCHHHHHH
Q 020333 102 LVRMTVP-IRDMESENLLDYLDVCFDFIDRRRKE----------GGVLVHCFAGVSRSAAIITAYLMRTEQ-LSSEGALE 169 (327)
Q Consensus 102 ~~~~~ip-i~D~~~~~l~~~~~~~~~fI~~~~~~----------g~VLVHC~~G~sRS~tvv~AYLm~~~~-~s~~~A~~ 169 (327)
+.++++. ..|....+-...+...++.|+...+. +..+|||.+|++||++++++|+|...+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 5555553 34543332223355555555544221 235799999999999999999997544 68999999
Q ss_pred HHHhhccc
Q 020333 170 SLRQSCDS 177 (327)
Q Consensus 170 ~vr~~rp~ 177 (327)
.+|..|+.
T Consensus 503 dlR~qRng 510 (535)
T PRK15375 503 DFRNSRNN 510 (535)
T ss_pred HHHhcCCc
Confidence 99999983
No 29
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.04 E-value=2.1e-05 Score=74.73 Aligned_cols=42 Identities=29% Similarity=0.397 Sum_probs=36.2
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhcc
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCD 176 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~A~~~vr~~rp 176 (327)
|+|+|||.+|+|||+++++..++. ...+++.+++..+|+.|+
T Consensus 222 ~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~ 268 (298)
T PHA02740 222 APIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKY 268 (298)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCc
Confidence 589999999999999999877553 335799999999999998
No 30
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.97 E-value=1.5e-05 Score=68.03 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=44.9
Q ss_pred CCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHH
Q 020333 98 KDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMR 158 (327)
Q Consensus 98 ~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~ 158 (327)
...++.|++||+.|...+. .+.|+..++|+...-+...+.+||.+|.+|+.+..+.|.|.
T Consensus 89 ~~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 89 EGNGLRYYRIPITDHQAPD-PEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999986554 66699999999988444489999999999999999888775
No 31
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.96 E-value=2.6e-05 Score=74.85 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=36.0
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhcc
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCD 176 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~A~~~vr~~rp 176 (327)
|+|+|||.+|+|||+++++..++. ...+++.+++..+|..|+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~ 294 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRH 294 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhccc
Confidence 689999999999999999876543 335799999999999998
No 32
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.92 E-value=3.5e-05 Score=69.25 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHH--hCCcEEEEcCCCCchhHHHHHHHHHHH-----cCCCHHHHHHHHHhhcc
Q 020333 121 LDVCFDFIDRRR--KEGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCD 176 (327)
Q Consensus 121 ~~~~~~fI~~~~--~~g~VLVHC~~G~sRS~tvv~AYLm~~-----~~~s~~~A~~~vr~~rp 176 (327)
+-..++.+.... ..++|+|||.+|.+||++++++.+|.. ...++.+++..+|+.|+
T Consensus 155 ~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~ 217 (235)
T PF00102_consen 155 FLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRP 217 (235)
T ss_dssp HHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTST
T ss_pred hhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCC
Confidence 334444444444 245999999999999999999987752 24799999999999998
No 33
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=97.92 E-value=1.8e-05 Score=78.41 Aligned_cols=70 Identities=27% Similarity=0.322 Sum_probs=58.1
Q ss_pred EEEecCCCCCCcHHHhHHHHHHHHHHHHhC---CcEEEEcCCCCchhHHHHHHHHHHHcCCC-HHHHHHHHHhhc
Q 020333 105 MTVPIRDMESENLLDYLDVCFDFIDRRRKE---GGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLRQSC 175 (327)
Q Consensus 105 ~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~---g~VLVHC~~G~sRS~tvv~AYLm~~~~~s-~~~A~~~vr~~r 175 (327)
..++..|...+.+.. +..+++-++..+.. ..|.|||.+|.+|++++++||||...-.. +++|+.+.-++|
T Consensus 76 ~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 76 ARFGFDDHNPPPLEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred eecCCCCCCCCcHHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 347788877777554 66777778888874 37899999999999999999999986654 999999999998
No 34
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.92 E-value=4.4e-05 Score=72.92 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=36.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhcc
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCD 176 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~A~~~vr~~rp 176 (327)
|+|+|||.+|+|||+++++..++. ...++..+++..+|+.|+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~ 276 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRH 276 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccc
Confidence 689999999999999999887543 335789999999999998
No 35
>PHA02738 hypothetical protein; Provisional
Probab=97.82 E-value=6.8e-05 Score=71.91 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=35.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhcc
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCD 176 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~A~~~vr~~rp 176 (327)
|+|+|||.+|+|||+++++..++. ...+++.+++..+|+.|+
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~ 274 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRY 274 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhh
Confidence 589999999999999998766433 235689999999999998
No 36
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.00026 Score=75.43 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=51.1
Q ss_pred ecCCCCCCcHHHhHHHHHHHHHHHHhC-C-cEEEEcCCCCchhHHHHHHHHHH-----HcCCCHHHHHHHHHhhcc
Q 020333 108 PIRDMESENLLDYLDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCD 176 (327)
Q Consensus 108 pi~D~~~~~l~~~~~~~~~fI~~~~~~-g-~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~A~~~vr~~rp 176 (327)
.+.|...++-..+|-..++.|+..+.. + +|||||.||+|||++++++=+|. ..-+.+-+.+..+|.+|-
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~ 1110 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRA 1110 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 455666666666776777777777665 6 99999999999999998654443 235677888888888876
No 37
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.33 E-value=0.00031 Score=68.39 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 020333 124 CFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCD 176 (327)
Q Consensus 124 ~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~~rp 176 (327)
+-.|+......+ -|+|||.+|.+|++-++++|||...+++..+|+..+...||
T Consensus 113 v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~ 166 (393)
T KOG2386|consen 113 VKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARP 166 (393)
T ss_pred HHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCC
Confidence 334454444456 79999999999999999999999999999999999999998
No 38
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.23 E-value=0.00054 Score=63.08 Aligned_cols=54 Identities=22% Similarity=0.398 Sum_probs=35.8
Q ss_pred ceEEEEEe-cCCCCCCcHHHhHHHHHHHHHHHH----hCCcEEEEcCCCCchhHHHHHHHHHH
Q 020333 101 KLVRMTVP-IRDMESENLLDYLDVCFDFIDRRR----KEGGVLVHCFAGVSRSAAIITAYLMR 158 (327)
Q Consensus 101 ~~~~~~ip-i~D~~~~~l~~~~~~~~~fI~~~~----~~g~VLVHC~~G~sRS~tvv~AYLm~ 158 (327)
.+.|++++ ..|....++. +..++|+... ..|+++|||.||+||++|+++.-.+.
T Consensus 184 ~Ihhf~y~nW~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll 242 (302)
T COG5599 184 KIHHFQYINWVDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILL 242 (302)
T ss_pred EEEEEEecCccccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHH
Confidence 44455554 4465555443 4455555554 44699999999999999998766444
No 39
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.88 E-value=0.00076 Score=66.00 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=35.7
Q ss_pred HhCCcEEEEcCCCCchhHHHHHHH-HH---HHcC----CCHHHHHHHHHhhcc
Q 020333 132 RKEGGVLVHCFAGVSRSAAIITAY-LM---RTEQ----LSSEGALESLRQSCD 176 (327)
Q Consensus 132 ~~~g~VLVHC~~G~sRS~tvv~AY-Lm---~~~~----~s~~~A~~~vr~~rp 176 (327)
.+.|+|.|||.||++|++|+++.= || +..| ++....++.||+.|.
T Consensus 449 ~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRS 501 (600)
T KOG0790|consen 449 MDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRS 501 (600)
T ss_pred cccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhc
Confidence 456899999999999999987443 33 3445 478899999999998
No 40
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=96.78 E-value=0.0038 Score=57.80 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhC--CcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 020333 121 LDVCFDFIDRRRKE--GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCD 176 (327)
Q Consensus 121 ~~~~~~fI~~~~~~--g~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~~rp 176 (327)
.+....++...+.. ++||+||.+|..|++.+++.|++...+..-..+-++++..++
T Consensus 121 ~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~ 178 (249)
T COG2365 121 AERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRY 178 (249)
T ss_pred HHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCc
Confidence 34444444444443 799999999999999999999998866666677777766655
No 41
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=96.60 E-value=0.0072 Score=60.49 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=49.1
Q ss_pred EEEEEecCC--CCCCcHHHhHHHHHHHHHHHHhC--C-cEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 103 VRMTVPIRD--MESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 103 ~~~~ipi~D--~~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
.++++++.. ....++...|++++.|+...+.+ + +|||+|..|.-.|+.|++|.|+..+..
T Consensus 340 ~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~ 404 (451)
T PF04179_consen 340 KYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDD 404 (451)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCc
Confidence 345555543 44567888999999999999887 6 899999999999999999999987653
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.28 E-value=0.012 Score=57.86 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCCchhHHHHHHH-HHHH--c---CCCHHHHHHHHHhhcc
Q 020333 134 EGGVLVHCFAGVSRSAAIITAY-LMRT--E---QLSSEGALESLRQSCD 176 (327)
Q Consensus 134 ~g~VLVHC~~G~sRS~tvv~AY-Lm~~--~---~~s~~~A~~~vr~~rp 176 (327)
.+++.|||.+|+||++|+++.. .|.. . .....+.+..+|..|+
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~ 347 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRP 347 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhh
Confidence 3699999999999999999655 3332 1 2347888888998887
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.46 E-value=0.024 Score=54.60 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCchhHHHHHHH-HHHHcCC----CHHHHHHHHHhhcc
Q 020333 135 GGVLVHCFAGVSRSAAIITAY-LMRTEQL----SSEGALESLRQSCD 176 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AY-Lm~~~~~----s~~~A~~~vr~~rp 176 (327)
++++|||.+|++|++|+++.- |++..+- +.-..+..+|..|+
T Consensus 288 ~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~ 334 (374)
T KOG0791|consen 288 GPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARM 334 (374)
T ss_pred CceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccc
Confidence 499999999999999998665 3333332 33344445555555
No 44
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.90 E-value=0.06 Score=58.35 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=40.2
Q ss_pred CcHHHhHHHHHHHHHHHHh-----CCcEEEEcCCCCchhHHHHHHHHH-----HHcCCCHHHHHHHHHhhcc
Q 020333 115 ENLLDYLDVCFDFIDRRRK-----EGGVLVHCFAGVSRSAAIITAYLM-----RTEQLSSEGALESLRQSCD 176 (327)
Q Consensus 115 ~~l~~~~~~~~~fI~~~~~-----~g~VLVHC~~G~sRS~tvv~AYLm-----~~~~~s~~~A~~~vr~~rp 176 (327)
.....+--..+.|+++... .|+++|||.||+||++++++.=-| .....+.-.-+..+|.+|+
T Consensus 706 ~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~ 777 (1087)
T KOG4228|consen 706 HGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRN 777 (1087)
T ss_pred CCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccc
Confidence 3333344456777777643 589999999999999997643333 2333455556666666666
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=93.77 E-value=0.19 Score=42.52 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=40.4
Q ss_pred CCCCCCcHHHhHHHHHHHHHHHHhC----CcEEEEcCCCCch----hHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Q 020333 110 RDMESENLLDYLDVCFDFIDRRRKE----GGVLVHCFAGVSR----SAAIITAYLMRTEQLSSEGALESLRQSCD 176 (327)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~~----g~VLVHC~~G~sR----S~tvv~AYLm~~~~~s~~~A~~~vr~~rp 176 (327)
.|.+.-++.. +-+....+++.++. ++.+||+...-.+ ++.++.+|+|...+||+++|++-+...-|
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5666666555 44555556666664 6899999775433 57788999999999999999999987765
No 46
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=93.20 E-value=0.052 Score=42.57 Aligned_cols=19 Identities=26% Similarity=0.828 Sum_probs=18.0
Q ss_pred cccchhhhhccccccceec
Q 020333 216 AYRCKKCRRVVALQENVVD 234 (327)
Q Consensus 216 ~~rCrkCR~~L~~~~~i~~ 234 (327)
.|.|++|+..|+.+.+++.
T Consensus 2 vf~C~~C~t~l~ds~~lvs 20 (96)
T PF03226_consen 2 VFQCKNCKTILADSNELVS 20 (96)
T ss_pred EEECCCCCCCcCCHHHhee
Confidence 5899999999999999998
No 47
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.56 E-value=0.34 Score=50.42 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=33.0
Q ss_pred cEEEEcCCCCchhHHHHHHHHHH----H--cCCCHHHHHHHHHhhccc
Q 020333 136 GVLVHCFAGVSRSAAIITAYLMR----T--EQLSSEGALESLRQSCDS 177 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tvv~AYLm~----~--~~~s~~~A~~~vr~~rp~ 177 (327)
+|+|||..|-+|+++-++.=|+. + ..++....++++|.+||.
T Consensus 929 pIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~G 976 (1004)
T KOG0793|consen 929 PIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPG 976 (1004)
T ss_pred ceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCc
Confidence 89999999999999876544322 1 246888889999999993
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=0.37 Score=49.27 Aligned_cols=25 Identities=44% Similarity=0.719 Sum_probs=20.5
Q ss_pred CC-cEEEEcCCCCchhHHHH-HHHHHH
Q 020333 134 EG-GVLVHCFAGVSRSAAII-TAYLMR 158 (327)
Q Consensus 134 ~g-~VLVHC~~G~sRS~tvv-~AYLm~ 158 (327)
.+ .|||||..|..|++-++ +|-||-
T Consensus 373 ~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 373 ESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred CCceEEEEcCCCccchHHHHHHHHHHh
Confidence 45 89999999999999887 555654
No 49
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=88.70 E-value=0.49 Score=51.63 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHH----c-CCCHHHHHHHHHhhcc
Q 020333 123 VCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT----E-QLSSEGALESLRQSCD 176 (327)
Q Consensus 123 ~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~~----~-~~s~~~A~~~vr~~rp 176 (327)
...+-.++...++++.|||.+|.+||++++++-++.. . -++.-.++.-+|..||
T Consensus 1007 ~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp 1065 (1087)
T KOG4228|consen 1007 SVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRP 1065 (1087)
T ss_pred HHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCc
Confidence 3333333333367999999999999999997765432 2 2466677888888887
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=80.98 E-value=7.6 Score=29.93 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
.+|+|+|..| .||... +.+| ...|.+
T Consensus 62 ~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 62 KKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred CEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4899999999 688643 3344 555653
No 51
>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....
Probab=78.21 E-value=1.7 Score=35.94 Aligned_cols=65 Identities=26% Similarity=0.521 Sum_probs=37.5
Q ss_pred CCccccchhhhhccccccceeccCCCCCCchhhhhhcccCCCCCCCCCCCCceeeeccccc--chhhhc---ccccceee
Q 020333 213 RTPAYRCKKCRRVVALQENVVDHIPGEGETAFEWHKRKSGNRFNRSDESECSSIFVEPLRW--MTAVEE---GALEGKLS 287 (327)
Q Consensus 213 ~~~~~rCrkCR~~L~~~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~fiep~~W--m~~~~~---~~~~Gkl~ 287 (327)
....|.|+.|+..||.+.+=..... | | | | |-+|+.. +....+ |...--+.
T Consensus 34 ~~G~Y~C~~Cg~pLF~S~~Kf~Sg~--G-----W-------P----------S-F~~~i~~~~v~~~~D~s~g~~R~Ev~ 88 (124)
T PF01641_consen 34 EEGIYVCAVCGTPLFSSDTKFDSGC--G-----W-------P----------S-FWQPIPGDAVKEREDFSHGMVRTEVR 88 (124)
T ss_dssp SSEEEEETTTS-EEEEGGGEETSSS--S-----S-------S----------E-ESSCSSTTSEEEEEEECTSSEEEEEE
T ss_pred CCEEEEcCCCCCccccCcccccCCc--C-----C-------c----------c-ccCcCChHHEEEeccccCCceEEEEE
Confidence 4678999999999999875332111 1 1 0 1 3444433 111111 23344689
Q ss_pred CcCCCCCcCeeeecc
Q 020333 288 CAHCEARLGYFNWSG 302 (327)
Q Consensus 288 Cp~C~~klG~f~w~G 302 (327)
|.+|++.||.-=-.|
T Consensus 89 C~~Cg~HLGHVF~DG 103 (124)
T PF01641_consen 89 CARCGSHLGHVFDDG 103 (124)
T ss_dssp ETTTCCEEEEEESTS
T ss_pred ecCCCCccccEeCCC
Confidence 999999999753355
No 52
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=76.96 E-value=5 Score=41.34 Aligned_cols=32 Identities=38% Similarity=0.525 Sum_probs=22.6
Q ss_pred HHHHHHh-CC-cEEEEcCCCCchhHHHH-HHHHHH
Q 020333 127 FIDRRRK-EG-GVLVHCFAGVSRSAAII-TAYLMR 158 (327)
Q Consensus 127 fI~~~~~-~g-~VLVHC~~G~sRS~tvv-~AYLm~ 158 (327)
+|-+++. +| .|||||..|..|+.-|+ +|=||-
T Consensus 335 ~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 335 EIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 3444455 55 89999999999997766 444554
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=76.04 E-value=6.2 Score=38.43 Aligned_cols=20 Identities=45% Similarity=0.815 Sum_probs=16.1
Q ss_pred hCC-cEEEEcCCCCchhHHHH
Q 020333 133 KEG-GVLVHCFAGVSRSAAII 152 (327)
Q Consensus 133 ~~g-~VLVHC~~G~sRS~tvv 152 (327)
.+| .|||||..|..|++-|+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 456 89999999999996655
No 54
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=74.08 E-value=3.4 Score=33.89 Aligned_cols=19 Identities=26% Similarity=0.579 Sum_probs=16.7
Q ss_pred CCccccchhhhhccccccc
Q 020333 213 RTPAYRCKKCRRVVALQEN 231 (327)
Q Consensus 213 ~~~~~rCrkCR~~L~~~~~ 231 (327)
....|.|+-|...||.+.+
T Consensus 30 ~~G~Y~C~~Cg~pLF~S~~ 48 (119)
T PRK05508 30 EKGTYVCKQCGAPLYRSED 48 (119)
T ss_pred CCeEEEecCCCCccccccc
Confidence 4678999999999999875
No 55
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=72.73 E-value=2.1 Score=35.37 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=25.4
Q ss_pred ccceeeCcCCCCCcCeeeeccccCC-CCCcccccee
Q 020333 282 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQ 316 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~v~Pa~~ 316 (327)
+--|-.||+|++|.=-.|=.=..|+ ||+-+.|...
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~~~ 41 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEA 41 (129)
T ss_pred hCccccCCCcCccccccCCCCccCCCcCCccCcchh
Confidence 3458899999999633333456897 9998877743
No 56
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=72.12 E-value=1.8 Score=31.53 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=16.0
Q ss_pred cccceeeCcCCCCCcCeee
Q 020333 281 ALEGKLSCAHCEARLGYFN 299 (327)
Q Consensus 281 ~~~Gkl~Cp~C~~klG~f~ 299 (327)
-.+-.-+||+|++.||.|+
T Consensus 48 ~kd~~H~Cp~C~~~lg~~~ 66 (67)
T smart00714 48 FKDVNHYCPNCGAFLGTYN 66 (67)
T ss_pred ccCccEECCCCCCEeEEec
Confidence 3466789999999999985
No 57
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=70.51 E-value=2.7 Score=24.99 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=14.2
Q ss_pred eCcCCCCCcCeeeeccccCC-CCCc
Q 020333 287 SCAHCEARLGYFNWSGIQCS-CGSW 310 (327)
Q Consensus 287 ~Cp~C~~klG~f~w~G~~Cs-Cg~~ 310 (327)
.||.|++.+ .-+-..|+ ||.-
T Consensus 2 ~CP~C~~~V---~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEV---PESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCc---hhhcCcCCCCCCC
Confidence 488888877 22345787 8853
No 58
>PRK00222 methionine sulfoxide reductase B; Provisional
Probab=70.22 E-value=4.9 Score=33.98 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=16.5
Q ss_pred CCccccchhhhhccccccc
Q 020333 213 RTPAYRCKKCRRVVALQEN 231 (327)
Q Consensus 213 ~~~~~rCrkCR~~L~~~~~ 231 (327)
....|.|+.|...||.+.+
T Consensus 40 ~~G~Y~C~~Cg~pLF~S~~ 58 (142)
T PRK00222 40 EKGIYVCIVCGEPLFSSDT 58 (142)
T ss_pred CCeEEEecCCCchhcCCcc
Confidence 4678999999999999864
No 59
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=68.93 E-value=2.8 Score=33.81 Aligned_cols=33 Identities=33% Similarity=0.675 Sum_probs=23.7
Q ss_pred ccceeeCcCCCCCcCeeeeccccCC-CCCccccc
Q 020333 282 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWITPA 314 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~v~Pa 314 (327)
+--|-.||+|++|.=-.|=.=..|+ ||+-+.|.
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCcccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 4458899999999633333346797 99888777
No 60
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=68.29 E-value=3.5 Score=26.94 Aligned_cols=25 Identities=28% Similarity=0.926 Sum_probs=18.5
Q ss_pred eCcCCCCCcCeeeeccc---cCC-CC-Ccc
Q 020333 287 SCAHCEARLGYFNWSGI---QCS-CG-SWI 311 (327)
Q Consensus 287 ~Cp~C~~klG~f~w~G~---~Cs-Cg-~~v 311 (327)
+||+|+..|-.....+. .|. || .|+
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGIWF 30 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeEEc
Confidence 59999999999988763 564 65 443
No 61
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=65.99 E-value=3 Score=30.83 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.1
Q ss_pred ccceeeCcCCCCCcCeee
Q 020333 282 LEGKLSCAHCEARLGYFN 299 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~ 299 (327)
.+-.-+||+|++.||.|+
T Consensus 55 kd~~H~Cp~C~~~lg~~~ 72 (73)
T PF10601_consen 55 KDVYHYCPNCGAFLGTYK 72 (73)
T ss_pred cCceEECCCCCCEeEEEe
Confidence 455689999999999985
No 62
>PRK01415 hypothetical protein; Validated
Probab=65.44 E-value=14 Score=34.16 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
+.+|+++|..| .|| ..++++|. ..|..
T Consensus 171 ~k~Iv~yCtgG-iRs-~kAa~~L~-~~Gf~ 197 (247)
T PRK01415 171 GKKIAMVCTGG-IRC-EKSTSLLK-SIGYD 197 (247)
T ss_pred CCeEEEECCCC-hHH-HHHHHHHH-HcCCC
Confidence 44899999999 587 45556664 44653
No 63
>TIGR00357 methionine-R-sulfoxide reductase. This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.
Probab=65.27 E-value=6.2 Score=33.05 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=16.6
Q ss_pred CCccccchhhhhccccccc
Q 020333 213 RTPAYRCKKCRRVVALQEN 231 (327)
Q Consensus 213 ~~~~~rCrkCR~~L~~~~~ 231 (327)
....|.|+.|...||.+.+
T Consensus 37 ~~G~Y~C~~Cg~pLF~S~~ 55 (134)
T TIGR00357 37 EEGIYVDITCGEPLFSSED 55 (134)
T ss_pred CCeEEEccCCCCccccccc
Confidence 4678999999999999875
No 64
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=65.21 E-value=5.6 Score=36.62 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=28.3
Q ss_pred ccceeeCcCCCCCcCeeeecc--ccCC-CCCccccceeeec
Q 020333 282 LEGKLSCAHCEARLGYFNWSG--IQCS-CGSWITPAFQLHK 319 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~w~G--~~Cs-Cg~~v~Pa~~l~~ 319 (327)
--|..+||+|+-..-.|.=-| +-|. ||.-|.|.--|.+
T Consensus 152 G~aef~C~~C~h~F~G~~qm~v~sPCy~C~~~v~P~~IlPP 192 (278)
T PF15135_consen 152 GIAEFHCPKCRHNFRGFAQMGVPSPCYGCGNPVYPSRILPP 192 (278)
T ss_pred ceeeeecccccccchhhhhcCCCCCccCCCCccCcccccCC
Confidence 367899999987766664434 5675 9999999877663
No 65
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=64.66 E-value=11 Score=26.29 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhh
Q 020333 149 AAIITAYLMRTEQLSSEGALESLRQS 174 (327)
Q Consensus 149 ~tvv~AYLm~~~~~s~~~A~~~vr~~ 174 (327)
..-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 34567889999999999999999875
No 66
>PF12773 DZR: Double zinc ribbon
Probab=61.98 E-value=4 Score=27.60 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=20.5
Q ss_pred cceeeCcCCCCCcCeeeeccccCC-CCCccccc
Q 020333 283 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPA 314 (327)
Q Consensus 283 ~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~v~Pa 314 (327)
.+-.+||+|+++|....=....|+ ||+-+.+.
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAENPPN 42 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCCCcCC
Confidence 445778888888883333335684 88766543
No 67
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=59.96 E-value=5.4 Score=25.56 Aligned_cols=23 Identities=35% Similarity=0.891 Sum_probs=16.1
Q ss_pred eeCcCCCCCcCeeee-cc-ccC-CCCCc
Q 020333 286 LSCAHCEARLGYFNW-SG-IQC-SCGSW 310 (327)
Q Consensus 286 l~Cp~C~~klG~f~w-~G-~~C-sCg~~ 310 (327)
..|+.|+++ .|.. .| .-| +||+-
T Consensus 9 ~~C~~C~~~--~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSR--WFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCe--EeEccCCEEEhhhCceE
Confidence 568889888 5555 36 478 88864
No 68
>smart00400 ZnF_CHCC zinc finger.
Probab=58.86 E-value=12 Score=26.00 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=23.9
Q ss_pred EEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHH
Q 020333 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (327)
Q Consensus 138 LVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~v 171 (327)
..||.+ -++++-+ +.++|+.+++++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 478875 2455544 6788888899999999875
No 69
>PLN02160 thiosulfate sulfurtransferase
Probab=58.16 E-value=19 Score=29.90 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=18.6
Q ss_pred hCC-cEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 133 KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 133 ~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
..+ +|+|||..| .||... +.++...|++
T Consensus 79 ~~~~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 344 899999999 688644 3334555653
No 70
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=57.56 E-value=24 Score=27.52 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
.+|+|||..|. ||. .+ +.+++..|.
T Consensus 67 ~~ivv~C~~G~-rs~-~a-~~~L~~~G~ 91 (109)
T cd01533 67 TPIVVNCAGRT-RSI-IG-AQSLINAGL 91 (109)
T ss_pred CeEEEECCCCc-hHH-HH-HHHHHHCCC
Confidence 38999999995 773 33 334455565
No 71
>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host. The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....
Probab=56.75 E-value=5.3 Score=32.91 Aligned_cols=26 Identities=27% Similarity=0.822 Sum_probs=20.0
Q ss_pred ccceeeCcCCCCCcCeee-eccccCCC
Q 020333 282 LEGKLSCAHCEARLGYFN-WSGIQCSC 307 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~-w~G~~CsC 307 (327)
..|+|.|-+|+..+|..- +.|...+|
T Consensus 57 ~~~~I~C~~C~~~wG~~m~yk~~~LP~ 83 (123)
T PF11648_consen 57 PNGKIHCKNCGQDWGIMMKYKGVELPC 83 (123)
T ss_dssp EEEEEEETSTSBEEEEEEEETTEEEEE
T ss_pred eCCEEEcCCCChHhhhheEECCccccE
Confidence 579999999999999765 45655443
No 72
>PF09814 HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2)-binding; InterPro: IPR019193 This entry consists of E3 ubiquitin-protein ligases which accept ubiquitin from specific E2 ubiquitin-conjugating enzymes, and transfer it to substrates, generally promoting their degradation by the proteasome [].
Probab=56.68 E-value=10 Score=36.47 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=15.4
Q ss_pred ccccchhhhhcccccccee
Q 020333 215 PAYRCKKCRRVVALQENVV 233 (327)
Q Consensus 215 ~~~rCrkCR~~L~~~~~i~ 233 (327)
..++|++|+..|.....+.
T Consensus 105 ~~~~C~~C~~~li~~~~~~ 123 (354)
T PF09814_consen 105 FSLCCRNCKNPLIPSRNFK 123 (354)
T ss_pred eEEECCCCCCcccCccccC
Confidence 6899999999997776543
No 73
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=55.91 E-value=4.4 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.7
Q ss_pred cceeeCcCCCCCc
Q 020333 283 EGKLSCAHCEARL 295 (327)
Q Consensus 283 ~Gkl~Cp~C~~kl 295 (327)
.+-..||+|+++|
T Consensus 14 ~~~~fC~~CG~~L 26 (26)
T PF13248_consen 14 PDAKFCPNCGAKL 26 (26)
T ss_pred cccccChhhCCCC
Confidence 4456799998876
No 74
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=54.81 E-value=45 Score=31.93 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
..+|+|||..| .|| ..+++||.. .|.+
T Consensus 171 dk~IvvyC~~G-~Rs-~~aa~~L~~-~Gf~ 197 (314)
T PRK00142 171 DKKVVMYCTGG-IRC-EKASAWMKH-EGFK 197 (314)
T ss_pred cCeEEEECCCC-cHH-HHHHHHHHH-cCCC
Confidence 34899999999 588 445566654 5663
No 75
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=54.80 E-value=7.5 Score=26.76 Aligned_cols=21 Identities=33% Similarity=0.756 Sum_probs=18.4
Q ss_pred ccceeeCcCCCCCcCeeeecc
Q 020333 282 LEGKLSCAHCEARLGYFNWSG 302 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~w~G 302 (327)
..|+|.|+.|+.++-...|.|
T Consensus 2 l~g~l~C~~CG~~m~~~~~~~ 22 (58)
T PF13408_consen 2 LSGLLRCGHCGSKMTRRKRKG 22 (58)
T ss_pred CCCcEEcccCCcEeEEEECCC
Confidence 468999999999999988864
No 76
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=54.32 E-value=7.1 Score=24.91 Aligned_cols=25 Identities=32% Similarity=0.910 Sum_probs=15.9
Q ss_pred eeeCcCCCCCcCeeee----cc--ccCC-CCC
Q 020333 285 KLSCAHCEARLGYFNW----SG--IQCS-CGS 309 (327)
Q Consensus 285 kl~Cp~C~~klG~f~w----~G--~~Cs-Cg~ 309 (327)
++.||+|+++---=+. .| .||+ ||+
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 5899999886432222 13 4887 875
No 77
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=54.18 E-value=55 Score=24.91 Aligned_cols=58 Identities=17% Similarity=0.374 Sum_probs=29.1
Q ss_pred EEEecCCC---CCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHH---HHHHHHcCCC
Q 020333 105 MTVPIRDM---ESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIIT---AYLMRTEQLS 163 (327)
Q Consensus 105 ~~ipi~D~---~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~---AYLm~~~~~s 163 (327)
.+||.... ........+.............+ .|+|+|..|. |+...+. +|++...|++
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 45666332 22333333444333333333455 7999997774 5544443 3445655653
No 78
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=51.47 E-value=5.3 Score=27.70 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=13.4
Q ss_pred cccchhhhhccccccc
Q 020333 216 AYRCKKCRRVVALQEN 231 (327)
Q Consensus 216 ~~rCrkCR~~L~~~~~ 231 (327)
.+||+.|.+.||...+
T Consensus 4 eiRC~~CnklLa~~g~ 19 (51)
T PF10122_consen 4 EIRCGHCNKLLAKAGE 19 (51)
T ss_pred ceeccchhHHHhhhcC
Confidence 5899999999998543
No 79
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=51.16 E-value=11 Score=29.42 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=21.7
Q ss_pred ccceeeCcCCCCCcCeeeec--------cccCC-CCCcccc
Q 020333 282 LEGKLSCAHCEARLGYFNWS--------GIQCS-CGSWITP 313 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~w~--------G~~Cs-Cg~~v~P 313 (327)
..++=+||+|+.+|.-++-. ..+|. |++.+.+
T Consensus 30 ~~~rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 30 IFPRSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred cCCCCcCcCCCCcCcccccchHHHHHHhCCCCcccCCCCCh
Confidence 34567788888888877643 34786 7776644
No 80
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=51.11 E-value=18 Score=27.76 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
...++|+|..| .|| ..++.+|... |++
T Consensus 61 ~~~ivv~C~~G-~rS-~~aa~~L~~~-G~~ 87 (110)
T COG0607 61 DDPIVVYCASG-VRS-AAAAAALKLA-GFT 87 (110)
T ss_pred CCeEEEEeCCC-CCh-HHHHHHHHHc-CCc
Confidence 34899999999 577 4455555443 543
No 81
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=50.51 E-value=33 Score=29.33 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
..|+|+|..|..||.. ++++++..|.+
T Consensus 117 ~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 117 RPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3899999999778865 45566666653
No 82
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=50.33 E-value=5.7 Score=35.07 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=4.5
Q ss_pred eccccCC-CCCccc
Q 020333 300 WSGIQCS-CGSWIT 312 (327)
Q Consensus 300 w~G~~Cs-Cg~~v~ 312 (327)
+.|.+|+ |+....
T Consensus 43 ~~~~~C~~C~~~~~ 56 (188)
T PF08996_consen 43 PSGLQCPNCSTPLS 56 (188)
T ss_dssp TTEEEETTT--B--
T ss_pred cCcCcCCCCCCcCC
Confidence 4455554 555443
No 83
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=48.95 E-value=7.9 Score=22.19 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=13.5
Q ss_pred eCcCCCCCcCeeeeccccCC-CCCc
Q 020333 287 SCAHCEARLGYFNWSGIQCS-CGSW 310 (327)
Q Consensus 287 ~Cp~C~~klG~f~w~G~~Cs-Cg~~ 310 (327)
.||+|++++= =....|+ ||+-
T Consensus 1 ~Cp~CG~~~~---~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIE---DDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCC---CcCcchhhhCCc
Confidence 4899988872 1234575 7754
No 84
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=48.63 E-value=7.1 Score=33.55 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=13.0
Q ss_pred eCcCCCCCcCeeee---ccccCC-CCCcc
Q 020333 287 SCAHCEARLGYFNW---SGIQCS-CGSWI 311 (327)
Q Consensus 287 ~Cp~C~~klG~f~w---~G~~Cs-Cg~~v 311 (327)
.||+|+.|. +|.= .|-.|+ ||.-.
T Consensus 111 ~Cp~c~~r~-tf~eA~~~~F~Cp~Cg~~L 138 (158)
T TIGR00373 111 ICPNMCVRF-TFNEAMELNFTCPRCGAML 138 (158)
T ss_pred ECCCCCcEe-eHHHHHHcCCcCCCCCCEe
Confidence 377776654 3322 156776 77543
No 85
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=47.37 E-value=9.3 Score=27.83 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=11.3
Q ss_pred ccccceeeCcCCC
Q 020333 280 GALEGKLSCAHCE 292 (327)
Q Consensus 280 ~~~~Gkl~Cp~C~ 292 (327)
..++|.|.||+|+
T Consensus 48 ~i~eg~L~Cp~c~ 60 (68)
T PF03966_consen 48 EIVEGELICPECG 60 (68)
T ss_dssp ETTTTEEEETTTT
T ss_pred cccCCEEEcCCCC
Confidence 4579999999996
No 86
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=47.22 E-value=9.4 Score=23.85 Aligned_cols=23 Identities=35% Similarity=0.888 Sum_probs=10.3
Q ss_pred CcCCCCCcCeeee-ccccCC-CCCcc
Q 020333 288 CAHCEARLGYFNW-SGIQCS-CGSWI 311 (327)
Q Consensus 288 Cp~C~~klG~f~w-~G~~Cs-Cg~~v 311 (327)
|..|++.+. ... ...+|. ||..|
T Consensus 3 C~~Cg~~~~-~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 3 CGECGAEVE-LKPGDPIRCPECGHRI 27 (32)
T ss_dssp ESSSSSSE--BSTSSTSSBSSSS-SE
T ss_pred CCcCCCeeE-cCCCCcEECCcCCCeE
Confidence 555655554 222 234665 66554
No 87
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=47.16 E-value=8.7 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=8.0
Q ss_pred eCcCCCCCcCeeee-ccccCC-CCC
Q 020333 287 SCAHCEARLGYFNW-SGIQCS-CGS 309 (327)
Q Consensus 287 ~Cp~C~~klG~f~w-~G~~Cs-Cg~ 309 (327)
+||+|++++=.-.. ...+|+ ||.
T Consensus 5 fC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SSSS-EEESSSS-
T ss_pred ccCcCCccccCCCCcCEeECCCCcC
Confidence 46666666533322 124553 543
No 88
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=47.10 E-value=47 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
.+|+|+|..| .||... +. ++...|.+
T Consensus 59 ~~vv~~c~~g-~rs~~~-~~-~l~~~G~~ 84 (101)
T cd01528 59 KDIVVLCHHG-GRSMQV-AQ-WLLRQGFE 84 (101)
T ss_pred CeEEEEeCCC-chHHHH-HH-HHHHcCCc
Confidence 3899999998 577444 33 33445654
No 89
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=46.93 E-value=9.7 Score=27.51 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=16.0
Q ss_pred eCcCCCCCcCe-eeeccccCC-CCCc
Q 020333 287 SCAHCEARLGY-FNWSGIQCS-CGSW 310 (327)
Q Consensus 287 ~Cp~C~~klG~-f~w~G~~Cs-Cg~~ 310 (327)
.||.|+.+... -+.....|+ ||..
T Consensus 30 ~C~~CG~~~~~~~~~r~~~C~~Cg~~ 55 (69)
T PF07282_consen 30 TCPRCGHRNKKRRSGRVFTCPNCGFE 55 (69)
T ss_pred CccCcccccccccccceEEcCCCCCE
Confidence 48888887777 344445776 7754
No 90
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=46.80 E-value=7.7 Score=23.39 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=5.7
Q ss_pred eCcCCCCCcC
Q 020333 287 SCAHCEARLG 296 (327)
Q Consensus 287 ~Cp~C~~klG 296 (327)
+||.|+++|=
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 5999999985
No 91
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=46.22 E-value=34 Score=26.10 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
.+|+|+|..| .||.. ++.. +...|++
T Consensus 62 ~~ivv~C~~G-~rs~~-aa~~-L~~~G~~ 87 (100)
T cd01523 62 QEVTVICAKE-GSSQF-VAEL-LAERGYD 87 (100)
T ss_pred CeEEEEcCCC-CcHHH-HHHH-HHHcCce
Confidence 4899999999 47743 3333 4455654
No 92
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=44.44 E-value=13 Score=23.65 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.5
Q ss_pred cceeeCcCCCCCc
Q 020333 283 EGKLSCAHCEARL 295 (327)
Q Consensus 283 ~Gkl~Cp~C~~kl 295 (327)
.+++.||+|+..+
T Consensus 23 ~~~v~C~~C~~~~ 35 (38)
T TIGR02098 23 GGKVRCGKCGHVW 35 (38)
T ss_pred CCEEECCCCCCEE
Confidence 4589999998764
No 93
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.19 E-value=13 Score=28.25 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=17.1
Q ss_pred eeCcCCCCCcCeeeeccc---cCC-CC
Q 020333 286 LSCAHCEARLGYFNWSGI---QCS-CG 308 (327)
Q Consensus 286 l~Cp~C~~klG~f~w~G~---~Cs-Cg 308 (327)
+.||.|++-|=.-.=+|. +|+ |+
T Consensus 2 llCP~C~v~l~~~~rs~vEiD~CPrCr 28 (88)
T COG3809 2 LLCPICGVELVMSVRSGVEIDYCPRCR 28 (88)
T ss_pred cccCcCCceeeeeeecCceeeeCCccc
Confidence 569999888877777773 676 64
No 94
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=43.78 E-value=13 Score=23.72 Aligned_cols=10 Identities=30% Similarity=1.122 Sum_probs=8.1
Q ss_pred eeeCcCCCCC
Q 020333 285 KLSCAHCEAR 294 (327)
Q Consensus 285 kl~Cp~C~~k 294 (327)
++.||+|+++
T Consensus 2 ~i~CP~C~~~ 11 (37)
T PF13719_consen 2 IITCPNCQTR 11 (37)
T ss_pred EEECCCCCce
Confidence 4789999874
No 95
>PRK00420 hypothetical protein; Validated
Probab=43.12 E-value=14 Score=30.09 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=13.7
Q ss_pred eeCcCCCCCcCeeeecc-ccCC-CCCcc
Q 020333 286 LSCAHCEARLGYFNWSG-IQCS-CGSWI 311 (327)
Q Consensus 286 l~Cp~C~~klG~f~w~G-~~Cs-Cg~~v 311 (327)
-+||.|++.|=.+ =.| .+|+ ||.-+
T Consensus 24 ~~CP~Cg~pLf~l-k~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 24 KHCPVCGLPLFEL-KDGEVVCPVHGKVY 50 (112)
T ss_pred CCCCCCCCcceec-CCCceECCCCCCee
Confidence 4677777665333 234 4664 76533
No 96
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=42.56 E-value=3.9 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=15.2
Q ss_pred ccchhhhhccccccceecc
Q 020333 217 YRCKKCRRVVALQENVVDH 235 (327)
Q Consensus 217 ~rCrkCR~~L~~~~~i~~H 235 (327)
|.|..|.+......++..|
T Consensus 1 y~C~~C~~~f~~~~~l~~H 19 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRH 19 (23)
T ss_dssp EEETTTTEEESSHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHH
Confidence 6899999988777766666
No 97
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=42.36 E-value=21 Score=33.70 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=16.6
Q ss_pred CCccccchhhhhccccccc
Q 020333 213 RTPAYRCKKCRRVVALQEN 231 (327)
Q Consensus 213 ~~~~~rCrkCR~~L~~~~~ 231 (327)
....|.|.-|...||.+.+
T Consensus 33 ~~G~y~c~~c~~~LF~s~~ 51 (283)
T PRK05550 33 EKGVYLCRRCGAPLFRSED 51 (283)
T ss_pred CCcEEEcCCCCchhcCChh
Confidence 4678999999999999865
No 98
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=42.21 E-value=35 Score=32.32 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhHHHH
Q 020333 136 GVLVHCFAGVSRSAAII 152 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tvv 152 (327)
.|-|=|..|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 58899999999999887
No 99
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=42.14 E-value=38 Score=25.58 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 134 ~g~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
+.+|+|+|..|...++..++ ..+...|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa-~~L~~~G~ 77 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAA-RRLSELGY 77 (92)
T ss_pred CCeEEEEeCCCCchHHHHHH-HHHHHcCc
Confidence 34899999999533344444 44444454
No 100
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=41.98 E-value=43 Score=26.48 Aligned_cols=26 Identities=27% Similarity=-0.101 Sum_probs=17.7
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
.|+|+|..| +++++.++.+| ...|++
T Consensus 81 ~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred EEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 899999998 56656654444 555654
No 101
>PHA00626 hypothetical protein
Probab=41.82 E-value=16 Score=25.88 Aligned_cols=25 Identities=32% Similarity=0.751 Sum_probs=12.7
Q ss_pred eCcCCCCC----cCee-eecc-ccCC-CCCcc
Q 020333 287 SCAHCEAR----LGYF-NWSG-IQCS-CGSWI 311 (327)
Q Consensus 287 ~Cp~C~~k----lG~f-~w~G-~~Cs-Cg~~v 311 (327)
.||+|++. -|.- .|+. .+|. ||..-
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~f 33 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYND 33 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCee
Confidence 57777662 2322 2444 3664 76443
No 102
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=41.07 E-value=27 Score=32.59 Aligned_cols=27 Identities=44% Similarity=0.448 Sum_probs=21.9
Q ss_pred CCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 020333 142 FAGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 142 ~~G~sRS~tvv~AYLm~~~~~s~~~A~~~ 170 (327)
.=|+|||++.+.+-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 4599999999888765 48899988765
No 103
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=40.86 E-value=12 Score=27.01 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.4
Q ss_pred eeCcCCCCCcCeeeeccc
Q 020333 286 LSCAHCEARLGYFNWSGI 303 (327)
Q Consensus 286 l~Cp~C~~klG~f~w~G~ 303 (327)
-.||.|++.==+.+|.|+
T Consensus 19 e~CP~Cgs~~~te~W~G~ 36 (64)
T COG2093 19 EICPVCGSTDLTEEWFGL 36 (64)
T ss_pred ccCCCCCCcccchhhccE
Confidence 459999999669999995
No 104
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=40.86 E-value=11 Score=33.03 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHcCCCHHHHH
Q 020333 146 SRSAAIITAYLMRTEQLSSEGAL 168 (327)
Q Consensus 146 sRS~tvv~AYLm~~~~~s~~~A~ 168 (327)
+.++..++-.|..+.-++-++.-
T Consensus 21 ~~~~~~Vl~~L~~~g~~tdeeLA 43 (178)
T PRK06266 21 DEEGFEVLKALIKKGEVTDEEIA 43 (178)
T ss_pred CccHhHHHHHHHHcCCcCHHHHH
Confidence 45555555555554344544433
No 105
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=40.72 E-value=13 Score=31.37 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.8
Q ss_pred ccceeeCcCCCCCcCee
Q 020333 282 LEGKLSCAHCEARLGYF 298 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f 298 (327)
..|++.||.|++.|=.+
T Consensus 120 ~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 120 MDGTFTCPRCGEELEED 136 (147)
T ss_pred CCCcEECCCCCCEEEEc
Confidence 36889999999988544
No 106
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=40.71 E-value=62 Score=26.14 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=19.8
Q ss_pred HhCC-cEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 132 RKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 132 ~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
+.+. .|+|+|..|-.||..+ ++++...|..
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCCc
Confidence 3344 8999997544677643 3777777763
No 107
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=40.43 E-value=32 Score=26.84 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=24.2
Q ss_pred EEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 020333 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (327)
Q Consensus 138 LVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~~ 174 (327)
+-||.+ -+.++-+ +.++|...++++.+|++.+.+.
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHH
Confidence 689985 4666654 6778999999999999998764
No 108
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=40.05 E-value=20 Score=30.50 Aligned_cols=27 Identities=26% Similarity=0.693 Sum_probs=19.9
Q ss_pred cceeeCcCCCCCcCeeeecc--ccCC-CCCc
Q 020333 283 EGKLSCAHCEARLGYFNWSG--IQCS-CGSW 310 (327)
Q Consensus 283 ~Gkl~Cp~C~~klG~f~w~G--~~Cs-Cg~~ 310 (327)
-|.+.|-+|+.++ .|+-.+ ..|+ ||.-
T Consensus 110 ~G~l~C~~Cg~~~-~~~~~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEV-ELTHPERLPPCPKCGHT 139 (146)
T ss_pred CceEecccCCCEE-EecCCCcCCCCCCCCCC
Confidence 6889999999888 566565 4776 7753
No 109
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=38.96 E-value=29 Score=32.71 Aligned_cols=26 Identities=46% Similarity=0.446 Sum_probs=21.2
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 020333 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 143 ~G~sRS~tvv~AYLm~~~~~s~~~A~~~ 170 (327)
=|+|||++.+.+-|+ .|++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 499999998888765 38999998764
No 110
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=37.87 E-value=31 Score=32.09 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=20.9
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 020333 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 143 ~G~sRS~tvv~AYLm~~~~~s~~~A~~~ 170 (327)
=|+|||++.+.|-|+ .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 499999998888765 48888888764
No 111
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=37.73 E-value=32 Score=32.27 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchhHHHH
Q 020333 136 GVLVHCFAGVSRSAAII 152 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tvv 152 (327)
.|-|=|.+|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 58899999999999987
No 112
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=37.37 E-value=10 Score=26.59 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=13.0
Q ss_pred cccchhhhhccccccc
Q 020333 216 AYRCKKCRRVVALQEN 231 (327)
Q Consensus 216 ~~rCrkCR~~L~~~~~ 231 (327)
.+||++|.++|+..+-
T Consensus 4 tiRC~~CnKlLa~a~~ 19 (60)
T COG4416 4 TIRCAKCNKLLAEAEG 19 (60)
T ss_pred eeehHHHhHHHHhccc
Confidence 4799999999987553
No 113
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=37.10 E-value=41 Score=26.61 Aligned_cols=37 Identities=22% Similarity=0.493 Sum_probs=29.4
Q ss_pred HhCCcEEEEcCCCCchhHHHHHHHHHHHcCCC-HHHHHHHHHh
Q 020333 132 RKEGGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLRQ 173 (327)
Q Consensus 132 ~~~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s-~~~A~~~vr~ 173 (327)
...++|+=||..| +-++.||+.+...+ -.||+.+-..
T Consensus 22 ~~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~ 59 (99)
T cd04445 22 EKDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASS 59 (99)
T ss_pred HHhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHHH
Confidence 3457999999999 56789999998885 8888876544
No 114
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=37.00 E-value=27 Score=28.29 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=17.8
Q ss_pred cccceeeCcCCCCCcCeeeeccccCC-CCCc
Q 020333 281 ALEGKLSCAHCEARLGYFNWSGIQCS-CGSW 310 (327)
Q Consensus 281 ~~~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~ 310 (327)
...++..|+.|+...-.-.+.-..|+ ||..
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 66 EQEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred eeCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 35678888888853322223225687 8844
No 115
>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]
Probab=36.81 E-value=14 Score=30.35 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=20.9
Q ss_pred CccccchhhhhccccccceeccCC
Q 020333 214 TPAYRCKKCRRVVALQENVVDHIP 237 (327)
Q Consensus 214 ~~~~rCrkCR~~L~~~~~i~~H~~ 237 (327)
...|+|+.|+.-|+...+++.+.-
T Consensus 13 ~~~y~C~~C~thla~~~dliSksf 36 (122)
T KOG3399|consen 13 HRLYSCAHCKTHLARHDDLISKSF 36 (122)
T ss_pred CceEeccCCcccccchhhcccccc
Confidence 458999999999999999998753
No 116
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=36.46 E-value=25 Score=39.67 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=7.4
Q ss_pred hCCCcEEEEccc
Q 020333 25 SSEITHMLSVLS 36 (327)
Q Consensus 25 ~~gIt~IVnl~~ 36 (327)
+.+|..|+.|.+
T Consensus 413 ~~~VeeIl~lGe 424 (1337)
T PRK14714 413 RNGVEEILDVGE 424 (1337)
T ss_pred Hhchhhhhhhhh
Confidence 356777776654
No 117
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=36.28 E-value=30 Score=27.98 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=16.7
Q ss_pred cccceeeCcCCCCCcCeeeeccccCC-CCCc
Q 020333 281 ALEGKLSCAHCEARLGYFNWSGIQCS-CGSW 310 (327)
Q Consensus 281 ~~~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~ 310 (327)
...++..|+.|+..-. .......|+ ||..
T Consensus 66 ~vp~~~~C~~Cg~~~~-~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 66 YKPAQAWCWDCSQVVE-IHQHDAQCPHCHGE 95 (113)
T ss_pred eeCcEEEcccCCCEEe-cCCcCccCcCCCCC
Confidence 3567888999973221 111233587 8843
No 118
>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=36.23 E-value=39 Score=28.37 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.7
Q ss_pred CCccccchhhhhccccccc
Q 020333 213 RTPAYRCKKCRRVVALQEN 231 (327)
Q Consensus 213 ~~~~~rCrkCR~~L~~~~~ 231 (327)
....|.|.-|...||.+.+
T Consensus 39 ~~GiY~c~~cg~pLF~S~~ 57 (140)
T COG0229 39 EKGIYVCIVCGEPLFSSED 57 (140)
T ss_pred CCceEEeecCCCccccccc
Confidence 5678999999999999865
No 119
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=36.10 E-value=34 Score=32.04 Aligned_cols=26 Identities=46% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 020333 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 143 ~G~sRS~tvv~AYLm~~~~~s~~~A~~~ 170 (327)
=|+|||++.+.+-|+ .|++-++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999998888765 48999988764
No 120
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=35.84 E-value=77 Score=25.17 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
.+|+|+|..| .||...+ .++...|.
T Consensus 65 ~~ivv~C~~G-~rs~~aa--~~L~~~G~ 89 (117)
T cd01522 65 RPVLLLCRSG-NRSIAAA--EAAAQAGF 89 (117)
T ss_pred CeEEEEcCCC-ccHHHHH--HHHHHCCC
Confidence 3899999999 5776543 33345554
No 121
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=35.43 E-value=69 Score=30.26 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHH----hCC----cEEEEcCCCCchhHHHH
Q 020333 121 LDVCFDFIDRRR----KEG----GVLVHCFAGVSRSAAII 152 (327)
Q Consensus 121 ~~~~~~fI~~~~----~~g----~VLVHC~~G~sRS~tvv 152 (327)
++...++++..+ ++| .|-|=|..|..||++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 224 LDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 444444444433 345 48899999999999886
No 122
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=34.25 E-value=35 Score=35.09 Aligned_cols=20 Identities=5% Similarity=-0.097 Sum_probs=17.3
Q ss_pred CCCccccchhhhhccccccc
Q 020333 212 NRTPAYRCKKCRRVVALQEN 231 (327)
Q Consensus 212 ~~~~~~rCrkCR~~L~~~~~ 231 (327)
..+..|.|+.|...||.+.+
T Consensus 414 ~~~G~y~c~~c~~pLf~s~~ 433 (521)
T PRK14018 414 FKPGIYVDVVSGEPLFSSAD 433 (521)
T ss_pred CCCEEEEecCCCCccccCcc
Confidence 46779999999999999864
No 123
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.24 E-value=27 Score=28.29 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=17.0
Q ss_pred ccceeeCcCCCCCcCeeeeccccCC-CCCc
Q 020333 282 LEGKLSCAHCEARLGYFNWSGIQCS-CGSW 310 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~ 310 (327)
..++..|+.|+... ........|+ ||..
T Consensus 67 ~p~~~~C~~Cg~~~-~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 67 EPVECECEDCSEEV-SPEIDLYRCPKCHGI 95 (115)
T ss_pred eCcEEEcccCCCEE-ecCCcCccCcCCcCC
Confidence 56778899997332 2222245685 8854
No 124
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=33.78 E-value=23 Score=38.82 Aligned_cols=33 Identities=21% Similarity=0.637 Sum_probs=26.8
Q ss_pred cceeeCcCCCCCcCeeeeccccCC-CCCcccccee
Q 020333 283 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQ 316 (327)
Q Consensus 283 ~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~v~Pa~~ 316 (327)
..+.-|.||++|-=.-=-+| +|. ||..+.+.++
T Consensus 1010 rQ~fRC~kC~~kYRR~PL~G-~C~kCGg~lilTV~ 1043 (1095)
T TIGR00354 1010 RQEVRCTKCNTKYRRIPLVG-KCLKCGNNLTLTVS 1043 (1095)
T ss_pred ccceeecccCCccccCCCCC-cccccCCeEEEEEe
Confidence 56789999999987777788 996 9999966543
No 125
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=33.71 E-value=21 Score=25.77 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.9
Q ss_pred eCcCCCCCcCeeeeccc
Q 020333 287 SCAHCEARLGYFNWSGI 303 (327)
Q Consensus 287 ~Cp~C~~klG~f~w~G~ 303 (327)
.||.|++.-=+.+|.|.
T Consensus 17 ~CP~Cgs~~~T~~W~G~ 33 (61)
T PRK08351 17 RCPVCGSRDLSDEWFDL 33 (61)
T ss_pred cCCCCcCCccccccccE
Confidence 49999998888999994
No 126
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=33.70 E-value=75 Score=23.18 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
.|+|+|..| .|+ ..+++++...|..
T Consensus 58 ~iv~~c~~g-~~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 58 PVVVYCRSG-NRS--AKAAWLLRELGFK 82 (100)
T ss_pred eEEEEeCCC-cHH--HHHHHHHHHcCCC
Confidence 899999666 465 3335555665654
No 127
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=33.45 E-value=2.5e+02 Score=26.47 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=54.3
Q ss_pred CcceEEEEEecCCCCCC-----cHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHh
Q 020333 99 DLKLVRMTVPIRDMESE-----NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQ 173 (327)
Q Consensus 99 ~~~~~~~~ipi~D~~~~-----~l~~~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~ 173 (327)
+..+.....|..|-... +....++..++..+.+...+.+=++|..|+. | .=+.+|+... +++++|++.++.
T Consensus 33 Gt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvH--P-aE~~~l~e~~-~~peea~e~m~~ 108 (285)
T COG1831 33 GTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVH--P-AEVSRLAEAG-RSPEEALEEMRH 108 (285)
T ss_pred CcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccC--H-HHHHHHHHhc-cChHHHHHHHHH
Confidence 34555666666665544 6777788888888878778888899999997 3 3457788775 999999998886
Q ss_pred hcc
Q 020333 174 SCD 176 (327)
Q Consensus 174 ~rp 176 (327)
.-.
T Consensus 109 ~le 111 (285)
T COG1831 109 ALE 111 (285)
T ss_pred HHH
Confidence 543
No 128
>PRK11032 hypothetical protein; Provisional
Probab=33.45 E-value=29 Score=29.96 Aligned_cols=27 Identities=33% Similarity=0.683 Sum_probs=21.9
Q ss_pred cceeeCcCCCCCcCeeeecc--ccCC-CCCc
Q 020333 283 EGKLSCAHCEARLGYFNWSG--IQCS-CGSW 310 (327)
Q Consensus 283 ~Gkl~Cp~C~~klG~f~w~G--~~Cs-Cg~~ 310 (327)
-|.|.|-+|+.++ .|...| .-|+ ||.-
T Consensus 122 ~G~LvC~~Cg~~~-~~~~p~~i~pCp~C~~~ 151 (160)
T PRK11032 122 LGNLVCEKCHHHL-AFYTPEVLPLCPKCGHD 151 (160)
T ss_pred cceEEecCCCCEE-EecCCCcCCCCCCCCCC
Confidence 6899999999999 888877 4786 8753
No 129
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=33.27 E-value=19 Score=31.65 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=4.7
Q ss_pred ccchhhhhc
Q 020333 217 YRCKKCRRV 225 (327)
Q Consensus 217 ~rCrkCR~~ 225 (327)
..|++||..
T Consensus 62 i~~~k~rd~ 70 (176)
T COG1675 62 ISYRKKRDE 70 (176)
T ss_pred eEEEeeccc
Confidence 445555544
No 130
>PRK11827 hypothetical protein; Provisional
Probab=33.08 E-value=24 Score=25.42 Aligned_cols=14 Identities=29% Similarity=1.051 Sum_probs=11.2
Q ss_pred eeeCcCCCCCcCeee
Q 020333 285 KLSCAHCEARLGYFN 299 (327)
Q Consensus 285 kl~Cp~C~~klG~f~ 299 (327)
-|.||.|+.+| .|+
T Consensus 8 ILaCP~ckg~L-~~~ 21 (60)
T PRK11827 8 IIACPVCNGKL-WYN 21 (60)
T ss_pred heECCCCCCcC-eEc
Confidence 48999999988 454
No 131
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=32.74 E-value=20 Score=23.92 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=9.0
Q ss_pred cceeeCcCCCCC
Q 020333 283 EGKLSCAHCEAR 294 (327)
Q Consensus 283 ~Gkl~Cp~C~~k 294 (327)
+| ..||+|++.
T Consensus 17 ~g-~~CP~Cg~~ 27 (46)
T PF12760_consen 17 DG-FVCPHCGST 27 (46)
T ss_pred CC-CCCCCCCCe
Confidence 44 779999997
No 132
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=32.10 E-value=24 Score=23.50 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=9.5
Q ss_pred eeeCcCCCCCc
Q 020333 285 KLSCAHCEARL 295 (327)
Q Consensus 285 kl~Cp~C~~kl 295 (327)
.+.||.|++++
T Consensus 21 ~~~Cp~CG~~~ 31 (46)
T PRK00398 21 GVRCPYCGYRI 31 (46)
T ss_pred ceECCCCCCeE
Confidence 68999998876
No 133
>COG5629 Predicted metal-binding protein [Function unknown]
Probab=31.98 E-value=24 Score=32.93 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=23.9
Q ss_pred ccceeeCcCCCCCcCeee---------ec-cccCCCCCccccceee
Q 020333 282 LEGKLSCAHCEARLGYFN---------WS-GIQCSCGSWITPAFQL 317 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~---------w~-G~~CsCg~~v~Pa~~l 317 (327)
-+-||+|-+|+|+||--| |. ..-|+=.+.+-|.+-|
T Consensus 166 pNfklhCsfCnA~lGlpn~~s~~kl~r~~k~~I~~g~tKihP~~di 211 (321)
T COG5629 166 PNFKLHCSFCNARLGLPNDSSIRKLFRYNKEVIPNGCTKIHPHEDL 211 (321)
T ss_pred CCcceeeehhhhhhCCCCchhhhhhhhcchheecCCCcccCchHHH
Confidence 356999999999998644 43 3345544466666544
No 134
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=31.87 E-value=24 Score=23.61 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=9.9
Q ss_pred ceeeCcCCCCCc
Q 020333 284 GKLSCAHCEARL 295 (327)
Q Consensus 284 Gkl~Cp~C~~kl 295 (327)
+.+.||.|+.|+
T Consensus 18 ~~irC~~CG~rI 29 (44)
T smart00659 18 DVVRCRECGYRI 29 (44)
T ss_pred CceECCCCCceE
Confidence 458999999886
No 135
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=31.74 E-value=26 Score=24.16 Aligned_cols=8 Identities=25% Similarity=0.804 Sum_probs=5.6
Q ss_pred eeCcCCCC
Q 020333 286 LSCAHCEA 293 (327)
Q Consensus 286 l~Cp~C~~ 293 (327)
-.||+|++
T Consensus 21 ~fCP~Cg~ 28 (50)
T PRK00432 21 KFCPRCGS 28 (50)
T ss_pred CcCcCCCc
Confidence 36888866
No 136
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=31.50 E-value=56 Score=24.65 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
.+|+|+|..| .||.. ++.+ +...|.+
T Consensus 57 ~~iv~~c~~G-~rs~~-aa~~-L~~~G~~ 82 (95)
T cd01534 57 ARIVLADDDG-VRADM-TASW-LAQMGWE 82 (95)
T ss_pred CeEEEECCCC-ChHHH-HHHH-HHHcCCE
Confidence 3899999999 47753 3333 3555653
No 137
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=31.33 E-value=34 Score=29.78 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=27.1
Q ss_pred CccccCCeEecChhhhhCHHH--HhhCCCcEEEEc
Q 020333 2 PYLVREHLFIGNISDAADILQ--NGSSEITHMLSV 34 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~--L~~~gIt~IVnl 34 (327)
|+...|++|+-++.+. +.+. |++.||+.||-=
T Consensus 14 p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~D 47 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIFD 47 (168)
T ss_pred ccccCCCEEcCChhhC-CcchhhhhhcCceEEEEc
Confidence 7889999999988766 6777 999999998743
No 138
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=31.00 E-value=25 Score=29.34 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.5
Q ss_pred ccceeeCcCCCCC
Q 020333 282 LEGKLSCAHCEAR 294 (327)
Q Consensus 282 ~~Gkl~Cp~C~~k 294 (327)
-.|+++||.|+-+
T Consensus 41 KdG~v~CPvC~~~ 53 (131)
T COG1645 41 KDGEVFCPVCGYR 53 (131)
T ss_pred eCCeEECCCCCce
Confidence 3789999999853
No 139
>PHA02540 61 DNA primase; Provisional
Probab=30.94 E-value=79 Score=30.71 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.1
Q ss_pred CcEEEEcCC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHhh
Q 020333 135 GGVLVHCFA-GVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (327)
Q Consensus 135 g~VLVHC~~-G~sRS~tvv~AYLm~~~~~s~~~A~~~vr~~ 174 (327)
+..+-||.. |.+.. ++.|||...++++.||++.+-+.
T Consensus 52 ~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~ 89 (337)
T PHA02540 52 DGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKE 89 (337)
T ss_pred CceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHH
Confidence 368999965 66654 56999999999999999865544
No 140
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=29.94 E-value=45 Score=23.64 Aligned_cols=20 Identities=30% Similarity=0.916 Sum_probs=14.6
Q ss_pred eCcCCCCCcCeeeeccccCC-CCCcc
Q 020333 287 SCAHCEARLGYFNWSGIQCS-CGSWI 311 (327)
Q Consensus 287 ~Cp~C~~klG~f~w~G~~Cs-Cg~~v 311 (327)
.||+| |.|.. ..+|+ ||.-.
T Consensus 7 ~C~~C----gvYTL-k~~CP~CG~~t 27 (56)
T PRK13130 7 KCPKC----GVYTL-KEICPVCGGKT 27 (56)
T ss_pred ECCCC----CCEEc-cccCcCCCCCC
Confidence 58887 67777 56886 88654
No 141
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=29.30 E-value=53 Score=29.26 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhh
Q 020333 153 TAYLMRTEQLSSEGALESLRQS 174 (327)
Q Consensus 153 ~AYLm~~~~~s~~~A~~~vr~~ 174 (327)
=+.||.++|+|-++||+++|..
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4569999999999999999864
No 142
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=28.51 E-value=9.6 Score=22.00 Aligned_cols=20 Identities=15% Similarity=0.596 Sum_probs=16.7
Q ss_pred ccchhhhhccccccceeccC
Q 020333 217 YRCKKCRRVVALQENVVDHI 236 (327)
Q Consensus 217 ~rCrkCR~~L~~~~~i~~H~ 236 (327)
|+|..|.+..-+...++.|.
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~ 21 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHK 21 (27)
T ss_dssp EEETTTTEEESSHHHHHHHH
T ss_pred CCCCccCCccCChhHHHHHh
Confidence 78999999987777777775
No 143
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=28.34 E-value=1.3e+02 Score=22.34 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
.+|+|+|..| .||.. ++.++...|.
T Consensus 57 ~~ivv~c~~g-~~s~~--a~~~l~~~G~ 81 (96)
T cd01444 57 RPVVVYCYHG-NSSAQ--LAQALREAGF 81 (96)
T ss_pred CCEEEEeCCC-ChHHH--HHHHHHHcCC
Confidence 3899999977 45533 2444555554
No 144
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=28.19 E-value=14 Score=33.97 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=11.8
Q ss_pred hhcccccceeeCcCCCCC-cCeeeec
Q 020333 277 VEEGALEGKLSCAHCEAR-LGYFNWS 301 (327)
Q Consensus 277 ~~~~~~~Gkl~Cp~C~~k-lG~f~w~ 301 (327)
+.+.|+....+||+|+++ |-.|.=.
T Consensus 23 ltE~Wv~~n~yCP~Cg~~~L~~f~NN 48 (254)
T PF06044_consen 23 LTEDWVAENMYCPNCGSKPLSKFENN 48 (254)
T ss_dssp HHHHHHHHH---TTT--SS-EE----
T ss_pred HHHHHHHHCCcCCCCCChhHhhccCC
Confidence 455677788999999999 8888653
No 145
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=28.01 E-value=1.3e+02 Score=23.42 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
.|+|+|..| .||... +. ++...|.
T Consensus 60 ~vvlyC~~G-~rS~~a-a~-~L~~~G~ 83 (101)
T TIGR02981 60 TVKLYCNAG-RQSGMA-KD-ILLDMGY 83 (101)
T ss_pred eEEEEeCCC-HHHHHH-HH-HHHHcCC
Confidence 799999999 476544 33 3344454
No 146
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=27.90 E-value=2.3e+02 Score=22.72 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=14.7
Q ss_pred HHHHhhCCCcEEEEccc
Q 020333 20 ILQNGSSEITHMLSVLS 36 (327)
Q Consensus 20 ~~~L~~~gIt~IVnl~~ 36 (327)
++.|++.||+.||+|..
T Consensus 6 ~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHCCCeEEEEECC
Confidence 35789999999999976
No 147
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=22 Score=25.51 Aligned_cols=12 Identities=50% Similarity=1.281 Sum_probs=9.9
Q ss_pred Cccccchhhhhc
Q 020333 214 TPAYRCKKCRRV 225 (327)
Q Consensus 214 ~~~~rCrkCR~~ 225 (327)
...+||.+||+.
T Consensus 36 ~~I~Rc~~CRk~ 47 (61)
T COG2888 36 VEIYRCAKCRKL 47 (61)
T ss_pred eeeehhhhHHHc
Confidence 457999999985
No 148
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=27.53 E-value=27 Score=32.15 Aligned_cols=35 Identities=23% Similarity=0.705 Sum_probs=26.5
Q ss_pred eeeCcCCCCCcCeeeeccccCC-CCCccccceeeecCCc
Q 020333 285 KLSCAHCEARLGYFNWSGIQCS-CGSWITPAFQLHKSRV 322 (327)
Q Consensus 285 kl~Cp~C~~klG~f~w~G~~Cs-Cg~~v~Pa~~l~~skv 322 (327)
+..|-+|++|+|.---+| +|. ||..+ -.-+++.+|
T Consensus 167 ~~rc~~c~~k~rr~pl~g-~c~kcg~~~--~ltv~~g~v 202 (253)
T COG1933 167 EFRCVKCNTKFRRPPLDG-KCPICGGKI--VLTVSKGAI 202 (253)
T ss_pred eeehHhhhhhhcCCCccc-cccccCCeE--EEEEeccHH
Confidence 578999999999999999 887 99855 344455443
No 149
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=27.27 E-value=65 Score=30.25 Aligned_cols=26 Identities=46% Similarity=0.455 Sum_probs=19.7
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 020333 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 143 ~G~sRS~tvv~AYLm~~~~~s~~~A~~~ 170 (327)
=|+|||++.+.+-|. .|++-++|.++
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 489999988877654 48888887654
No 150
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=27.02 E-value=2.5e+02 Score=25.49 Aligned_cols=53 Identities=28% Similarity=0.362 Sum_probs=36.7
Q ss_pred CCCCcHHHhHHHHHHHHHHHHh----CC-cEEEEcCCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 020333 112 MESENLLDYLDVCFDFIDRRRK----EG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 112 ~~~~~l~~~~~~~~~fI~~~~~----~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~A~~~ 170 (327)
...+.+...++.++.|+++.+. .| .|+|+|.... +=+++|+-.|++.++....
T Consensus 129 p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~~i~~~ 186 (214)
T KOG0235|consen 129 PDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDEAIKEL 186 (214)
T ss_pred CCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHhhhhhe
Confidence 3456777778888888887653 56 8999997733 3346677778887766543
No 151
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.00 E-value=34 Score=38.69 Aligned_cols=29 Identities=24% Similarity=0.720 Sum_probs=14.5
Q ss_pred ceeeCcCCCCCcCeeeeccccCC-CCCcccc
Q 020333 284 GKLSCAHCEARLGYFNWSGIQCS-CGSWITP 313 (327)
Q Consensus 284 Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~v~P 313 (327)
.+.-|.||++|-=.-=-+| +|. ||..|.+
T Consensus 1252 Q~~RC~kC~~kyRR~PL~G-~C~kCGg~iil 1281 (1337)
T PRK14714 1252 QEFRCLKCGTKYRRMPLAG-KCRKCGGRIIL 1281 (1337)
T ss_pred cceeecccCcccccCCCCC-cccccCCeEEE
Confidence 3455555555544444444 553 5555533
No 152
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=26.65 E-value=66 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=17.7
Q ss_pred hCC-cEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 133 KEG-GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 133 ~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
... +|+|+|..| .||.. ++.++...|+
T Consensus 59 ~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 344 899999988 57643 3455565554
No 153
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=26.62 E-value=22 Score=22.77 Aligned_cols=10 Identities=60% Similarity=1.424 Sum_probs=8.2
Q ss_pred Cccccchhhh
Q 020333 214 TPAYRCKKCR 223 (327)
Q Consensus 214 ~~~~rCrkCR 223 (327)
--.|||+.||
T Consensus 27 ~qryrC~~C~ 36 (36)
T PF03811_consen 27 HQRYRCKDCR 36 (36)
T ss_pred CEeEecCcCC
Confidence 4589999996
No 154
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.59 E-value=35 Score=37.70 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=20.8
Q ss_pred cceeeCcCCCCCcCeeeeccccCC-CCCccccce
Q 020333 283 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAF 315 (327)
Q Consensus 283 ~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~v~Pa~ 315 (327)
..+.-|.||++|-=.-=-+| +|. ||..|.+.+
T Consensus 1035 rQ~fRC~kC~~kYRR~PL~G-~C~kCGg~lilTV 1067 (1121)
T PRK04023 1035 RQEFRCTKCGAKYRRPPLSG-KCPKCGGNLILTV 1067 (1121)
T ss_pred ccceeecccCcccccCCCCC-cCccCCCeEEEEE
Confidence 44677777777765555666 774 777775543
No 155
>PRK05320 rhodanese superfamily protein; Provisional
Probab=26.40 E-value=1e+02 Score=28.54 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
..+|+++|..| .|| ..++++|.. .|++
T Consensus 175 dk~IvvyC~~G-~Rs-~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 175 GKTVVSFCTGG-IRC-EKAAIHMQE-VGID 201 (257)
T ss_pred CCeEEEECCCC-HHH-HHHHHHHHH-cCCc
Confidence 44899999999 577 445666654 4653
No 156
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=26.26 E-value=29 Score=25.00 Aligned_cols=30 Identities=33% Similarity=0.744 Sum_probs=13.2
Q ss_pred ccceeeCcCCCCCcC-eeeeccccCC-CCCcc
Q 020333 282 LEGKLSCAHCEARLG-YFNWSGIQCS-CGSWI 311 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG-~f~w~G~~Cs-Cg~~v 311 (327)
....|.|-.|++|== .|.|.|.||+ ||.+-
T Consensus 27 ~~v~IlCNDC~~~s~v~fH~lg~KC~~C~SYN 58 (61)
T PF14599_consen 27 KKVWILCNDCNAKSEVPFHFLGHKCSHCGSYN 58 (61)
T ss_dssp -EEEEEESSS--EEEEE--TT----TTTS---
T ss_pred CEEEEECCCCCCccceeeeHhhhcCCCCCCcc
Confidence 356799988988632 4667899997 99764
No 157
>PHA02325 hypothetical protein
Probab=26.03 E-value=37 Score=24.71 Aligned_cols=16 Identities=50% Similarity=1.126 Sum_probs=12.6
Q ss_pred eCcCCCCCc--Ceeeecc
Q 020333 287 SCAHCEARL--GYFNWSG 302 (327)
Q Consensus 287 ~Cp~C~~kl--G~f~w~G 302 (327)
.||||+|+- |---|+|
T Consensus 5 ~CPkC~A~WldgqhYWsg 22 (72)
T PHA02325 5 ICPKCGARWLDGQHYWSG 22 (72)
T ss_pred ccCccCCEeEcceeeecc
Confidence 499999984 7777875
No 158
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=25.88 E-value=90 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
..|+|+|..|. ||...+ ..+...|+
T Consensus 73 ~~ivv~C~~G~-rs~~aa--~~L~~~G~ 97 (122)
T cd01526 73 SPIYVVCRRGN-DSQTAV--RKLKELGL 97 (122)
T ss_pred CcEEEECCCCC-cHHHHH--HHHHHcCC
Confidence 48999999995 875333 34455566
No 159
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=25.61 E-value=38 Score=22.35 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=9.1
Q ss_pred ccceeeCcCCC
Q 020333 282 LEGKLSCAHCE 292 (327)
Q Consensus 282 ~~Gkl~Cp~C~ 292 (327)
.+|+++||.|+
T Consensus 31 k~g~~~Cv~C~ 41 (41)
T PF06677_consen 31 KDGKIYCVSCG 41 (41)
T ss_pred cCCCEECCCCC
Confidence 47889999995
No 160
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=25.43 E-value=81 Score=23.74 Aligned_cols=25 Identities=8% Similarity=-0.091 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
.+|+|+|..| .||+. ++.+| ...|.
T Consensus 57 ~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 57 TRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 3899999987 57744 33444 55565
No 161
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=25.35 E-value=1.4e+02 Score=29.35 Aligned_cols=12 Identities=50% Similarity=0.972 Sum_probs=9.9
Q ss_pred hCC-cEEEEcCCC
Q 020333 133 KEG-GVLVHCFAG 144 (327)
Q Consensus 133 ~~g-~VLVHC~~G 144 (327)
.+| .||.||.+|
T Consensus 165 ~dg~~ILThcnsg 177 (363)
T PRK05772 165 NDGDTVLTQCNAG 177 (363)
T ss_pred CCCCEEEEecCCc
Confidence 356 899999887
No 162
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=25.14 E-value=1.9e+02 Score=22.51 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.5
Q ss_pred cEEEEcCCCCchhHHH
Q 020333 136 GVLVHCFAGVSRSAAI 151 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tv 151 (327)
.|+|||..|-.||+..
T Consensus 68 ~iv~~C~~~g~rs~~a 83 (113)
T cd01443 68 LAIFYCGSSQGRGPRA 83 (113)
T ss_pred EEEEECCCCCcccHHH
Confidence 8999999865677654
No 163
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=25.14 E-value=90 Score=23.75 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHcCC
Q 020333 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 134 ~g~VLVHC~~G~sRS~tvv~AYLm~~~~~ 162 (327)
...|+|+|..|. ||..+ |+.+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 348999999995 76543 334455565
No 164
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=24.97 E-value=53 Score=25.53 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=12.2
Q ss_pred CcEEEEcCCCCchhHH
Q 020333 135 GGVLVHCFAGVSRSAA 150 (327)
Q Consensus 135 g~VLVHC~~G~sRS~t 150 (327)
.+|||-|.+|++ |+.
T Consensus 4 ~~ILl~C~~G~s-SS~ 18 (95)
T TIGR00853 4 TNILLLCAAGMS-TSL 18 (95)
T ss_pred cEEEEECCCchh-HHH
Confidence 479999999998 443
No 165
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.46 E-value=59 Score=34.44 Aligned_cols=19 Identities=26% Similarity=0.713 Sum_probs=15.2
Q ss_pred cceeeCcCCCCCcCeeeec
Q 020333 283 EGKLSCAHCEARLGYFNWS 301 (327)
Q Consensus 283 ~Gkl~Cp~C~~klG~f~w~ 301 (327)
.|--.||+|+.++|..=|.
T Consensus 39 ~~~~fC~~CG~~~~~~~~~ 57 (645)
T PRK14559 39 VDEAHCPNCGAETGTIWWA 57 (645)
T ss_pred cccccccccCCcccchhhh
Confidence 4556899999999999553
No 166
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=24.33 E-value=42 Score=23.65 Aligned_cols=9 Identities=22% Similarity=0.866 Sum_probs=6.9
Q ss_pred eeCcCCCCC
Q 020333 286 LSCAHCEAR 294 (327)
Q Consensus 286 l~Cp~C~~k 294 (327)
+.||.|+.|
T Consensus 5 i~CP~CgnK 13 (55)
T PF14205_consen 5 ILCPICGNK 13 (55)
T ss_pred EECCCCCCc
Confidence 678888865
No 167
>smart00355 ZnF_C2H2 zinc finger.
Probab=23.86 E-value=14 Score=20.20 Aligned_cols=20 Identities=30% Similarity=0.858 Sum_probs=14.8
Q ss_pred ccchhhhhccccccceeccC
Q 020333 217 YRCKKCRRVVALQENVVDHI 236 (327)
Q Consensus 217 ~rCrkCR~~L~~~~~i~~H~ 236 (327)
|+|..|++.+....++..|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~ 20 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHM 20 (26)
T ss_pred CCCCCCcchhCCHHHHHHHH
Confidence 57889998877766666664
No 168
>PRK12495 hypothetical protein; Provisional
Probab=23.79 E-value=41 Score=30.59 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=5.8
Q ss_pred cceeeCcCCCCC
Q 020333 283 EGKLSCAHCEAR 294 (327)
Q Consensus 283 ~Gkl~Cp~C~~k 294 (327)
.|...||.|+..
T Consensus 56 pG~~~Cp~CQ~~ 67 (226)
T PRK12495 56 DGQEFCPTCQQP 67 (226)
T ss_pred CCeeECCCCCCc
Confidence 444555555443
No 169
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=23.71 E-value=1.8e+02 Score=30.46 Aligned_cols=36 Identities=33% Similarity=0.341 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH---HcCCCHHHHHHHHHh
Q 020333 135 GGVLVHCFAGVSRSAAIITAYLMR---TEQLSSEGALESLRQ 173 (327)
Q Consensus 135 g~VLVHC~~G~sRS~tvv~AYLm~---~~~~s~~~A~~~vr~ 173 (327)
.+..|||.-|. +++++++||+ ..+++.++|++.++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 38999999997 6899999875 457899999876654
No 170
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=23.61 E-value=61 Score=23.15 Aligned_cols=20 Identities=30% Similarity=0.953 Sum_probs=13.8
Q ss_pred eCcCCCCCcCeeeeccccCC-CCCcc
Q 020333 287 SCAHCEARLGYFNWSGIQCS-CGSWI 311 (327)
Q Consensus 287 ~Cp~C~~klG~f~w~G~~Cs-Cg~~v 311 (327)
.||+| |.|... .+|+ ||.-+
T Consensus 7 kC~~c----g~YTLk-e~Cp~CG~~t 27 (59)
T COG2260 7 KCPKC----GRYTLK-EKCPVCGGDT 27 (59)
T ss_pred cCcCC----Cceeec-ccCCCCCCcc
Confidence 37776 667776 6787 88554
No 171
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=23.52 E-value=31 Score=25.80 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=5.8
Q ss_pred cceeeCcCCCCC
Q 020333 283 EGKLSCAHCEAR 294 (327)
Q Consensus 283 ~Gkl~Cp~C~~k 294 (327)
..|+.||+|+.+
T Consensus 22 ~~k~FCp~CGn~ 33 (73)
T PF08772_consen 22 MTKQFCPKCGNA 33 (73)
T ss_dssp SS--S-SSS--S
T ss_pred CCceeCcccCCC
Confidence 578999999765
No 172
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=23.39 E-value=56 Score=22.46 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=7.5
Q ss_pred eCcCCCCCcCee
Q 020333 287 SCAHCEARLGYF 298 (327)
Q Consensus 287 ~Cp~C~~klG~f 298 (327)
-||.|+.+-=.|
T Consensus 3 PCPfCGg~~~~~ 14 (53)
T TIGR03655 3 PCPFCGGADVYL 14 (53)
T ss_pred CCCCCCCcceee
Confidence 477777765543
No 173
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.07 E-value=43 Score=33.04 Aligned_cols=24 Identities=21% Similarity=0.658 Sum_probs=16.6
Q ss_pred eeCcCCCCCcCeeeecc-ccCCCCC
Q 020333 286 LSCAHCEARLGYFNWSG-IQCSCGS 309 (327)
Q Consensus 286 l~Cp~C~~klG~f~w~G-~~CsCg~ 309 (327)
..||+|+.-+=.+..-. ++|.||.
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~ 331 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGH 331 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccc
Confidence 67999988774444433 6888885
No 174
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=23.03 E-value=1.5e+02 Score=26.64 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHHc
Q 020333 120 YLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTE 160 (327)
Q Consensus 120 ~~~~~~~fI~~~~~~g~VLVHC~~G~sRS~tvv~AYLm~~~ 160 (327)
.|.++++.|-.. .|+|+| .|++||+-++=++-|+-.
T Consensus 27 ~~~~a~~~i~~~--~gkv~V---~G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 27 DFVRAVELILEC--KGKVFV---TGVGKSGLIGKKFAARLA 62 (202)
T ss_pred HHHHHHHHHHhc--CCcEEE---EcCChhHHHHHHHHHHHH
Confidence 455555554333 678887 699999999877766643
No 175
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.98 E-value=1.8e+02 Score=25.82 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHH
Q 020333 117 LLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAY 155 (327)
Q Consensus 117 l~~~~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AY 155 (327)
+.+.+.++++.|-+++.++ +|++. |.|+|++++..+
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~ 59 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHF 59 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHH
Confidence 3456888888888888877 67664 777887766443
No 176
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=22.90 E-value=1.7e+02 Score=22.50 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
+..|+|+|..|. ||.. + +.+++..|++
T Consensus 58 ~~~ivv~c~~g~-~s~~-a-~~~L~~~G~~ 84 (108)
T PRK00162 58 DTPVMVMCYHGN-SSQG-A-AQYLLQQGFD 84 (108)
T ss_pred CCCEEEEeCCCC-CHHH-H-HHHHHHCCch
Confidence 448999999985 6533 2 3344555553
No 177
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=22.73 E-value=59 Score=26.53 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=17.2
Q ss_pred CCCchhHHHHHHHHHHHcCCC
Q 020333 143 AGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 143 ~G~sRS~tvv~AYLm~~~~~s 163 (327)
.|++|+.|.+++||+.....+
T Consensus 23 lgi~R~vA~tlv~L~~~~E~s 43 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDEAS 43 (124)
T ss_pred cCCCchHHHHHHHHhcCcchh
Confidence 579999999999999864443
No 178
>PRK06835 DNA replication protein DnaC; Validated
Probab=22.55 E-value=43 Score=32.27 Aligned_cols=24 Identities=38% Similarity=0.975 Sum_probs=18.3
Q ss_pred cceeeCcCCCCCcCeeeeccccCCCCC
Q 020333 283 EGKLSCAHCEARLGYFNWSGIQCSCGS 309 (327)
Q Consensus 283 ~Gkl~Cp~C~~klG~f~w~G~~CsCg~ 309 (327)
+-+-.||+|+-. |-+ .|.+|+|=.
T Consensus 96 ~~~y~Cp~C~dt-G~i--~~~~C~C~~ 119 (329)
T PRK06835 96 EMKYTCPKCKDT-GFI--NGKKCSCYK 119 (329)
T ss_pred CCCCCCCCCCCC-CCc--CCccccchh
Confidence 445689999988 665 367999964
No 179
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=22.48 E-value=1.8e+02 Score=22.85 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=11.6
Q ss_pred cEEEEcCCCCchhHHH
Q 020333 136 GVLVHCFAGVSRSAAI 151 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tv 151 (327)
.|+|+|..| .||...
T Consensus 62 ~IVlyC~~G-~rS~~a 76 (104)
T PRK10287 62 TVKLYCNAG-RQSGQA 76 (104)
T ss_pred eEEEEeCCC-hHHHHH
Confidence 799999998 566544
No 180
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.46 E-value=49 Score=19.31 Aligned_cols=9 Identities=22% Similarity=0.822 Sum_probs=7.1
Q ss_pred ceeeCcCCC
Q 020333 284 GKLSCAHCE 292 (327)
Q Consensus 284 Gkl~Cp~C~ 292 (327)
-...||+|+
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 467899996
No 181
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=22.12 E-value=13 Score=20.10 Aligned_cols=19 Identities=16% Similarity=0.602 Sum_probs=12.1
Q ss_pred ccchhhhhccccccceecc
Q 020333 217 YRCKKCRRVVALQENVVDH 235 (327)
Q Consensus 217 ~rCrkCR~~L~~~~~i~~H 235 (327)
|.|..|.+.......+..|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H 19 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQH 19 (24)
T ss_dssp EE-SSTS-EESSHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHH
Confidence 5789999887766665555
No 182
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=22.04 E-value=42 Score=26.39 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.5
Q ss_pred CcEEEEcCCC
Q 020333 135 GGVLVHCFAG 144 (327)
Q Consensus 135 g~VLVHC~~G 144 (327)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 3899999877
No 183
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=21.87 E-value=49 Score=37.72 Aligned_cols=31 Identities=26% Similarity=0.683 Sum_probs=25.2
Q ss_pred cceeeCcCCCCCcCeeeeccccCC-CCCccccce
Q 020333 283 EGKLSCAHCEARLGYFNWSGIQCS-CGSWITPAF 315 (327)
Q Consensus 283 ~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~v~Pa~ 315 (327)
..+.-| ||++|-=.---+| +|. ||..+.+.+
T Consensus 1540 rQ~~RC-kC~~kyRR~PL~G-~C~kCGg~~ilTV 1571 (1627)
T PRK14715 1540 RQEFRC-KCGAKYRRVPLKG-KCPKCGSKLILTV 1571 (1627)
T ss_pred ccceee-cCCCccccCCCCC-cCcccCCeEEEEE
Confidence 457899 9999987777788 997 999986544
No 184
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.61 E-value=45 Score=24.34 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=7.4
Q ss_pred ceeeCcCCCCC
Q 020333 284 GKLSCAHCEAR 294 (327)
Q Consensus 284 Gkl~Cp~C~~k 294 (327)
++-.||||+.+
T Consensus 3 ~~~kCpKCgn~ 13 (68)
T COG3478 3 NAFKCPKCGNT 13 (68)
T ss_pred ccccCCCcCCc
Confidence 34459999754
No 185
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=21.53 E-value=43 Score=21.90 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=12.0
Q ss_pred cccceeeCcCCCCCcCe
Q 020333 281 ALEGKLSCAHCEARLGY 297 (327)
Q Consensus 281 ~~~Gkl~Cp~C~~klG~ 297 (327)
...|.+.|++|+.-|..
T Consensus 15 ~~~g~~vC~~CG~Vl~e 31 (43)
T PF08271_consen 15 PERGELVCPNCGLVLEE 31 (43)
T ss_dssp TTTTEEEETTT-BBEE-
T ss_pred CCCCeEECCCCCCEeec
Confidence 35789999999877653
No 186
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.51 E-value=44 Score=33.32 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=22.4
Q ss_pred ccceeeCcCCCCCcCeeeeccccCC-CCCcc
Q 020333 282 LEGKLSCAHCEARLGYFNWSGIQCS-CGSWI 311 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~w~G~~Cs-Cg~~v 311 (327)
..-+-.||.|+.++=|=-=.|.+|. ||+..
T Consensus 347 ~~~~p~Cp~Cg~~m~S~G~~g~rC~kCg~~~ 377 (421)
T COG1571 347 ERVNPVCPRCGGRMKSAGRNGFRCKKCGTRA 377 (421)
T ss_pred EEcCCCCCccCCchhhcCCCCcccccccccC
Confidence 4456689999988765544488998 99765
No 187
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.43 E-value=1.5e+02 Score=28.82 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=12.6
Q ss_pred hCC-cEEEEcCCCCchh
Q 020333 133 KEG-GVLVHCFAGVSRS 148 (327)
Q Consensus 133 ~~g-~VLVHC~~G~sRS 148 (327)
..| .||.||.+|..++
T Consensus 146 ~~g~~ILThc~sg~lat 162 (339)
T PRK06036 146 EDGDTVLTHCNAGRLAC 162 (339)
T ss_pred cCCCEEEEecCCccccc
Confidence 356 8999999997654
No 188
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=21.33 E-value=47 Score=20.57 Aligned_cols=10 Identities=20% Similarity=0.667 Sum_probs=5.7
Q ss_pred eeCcCCCCCc
Q 020333 286 LSCAHCEARL 295 (327)
Q Consensus 286 l~Cp~C~~kl 295 (327)
-.||||+.-+
T Consensus 2 hlcpkcgvgv 11 (36)
T PF09151_consen 2 HLCPKCGVGV 11 (36)
T ss_dssp -B-TTTSSSB
T ss_pred ccCCccCceE
Confidence 4699997543
No 189
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=21.30 E-value=36 Score=24.39 Aligned_cols=11 Identities=55% Similarity=1.283 Sum_probs=8.8
Q ss_pred ccccchhhhhc
Q 020333 215 PAYRCKKCRRV 225 (327)
Q Consensus 215 ~~~rCrkCR~~ 225 (327)
..+||.+||+.
T Consensus 35 ~I~RC~~CRk~ 45 (59)
T PRK14890 35 IIYRCEKCRKQ 45 (59)
T ss_pred eEeechhHHhc
Confidence 37889999885
No 190
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=21.12 E-value=1.2e+02 Score=23.04 Aligned_cols=25 Identities=40% Similarity=0.499 Sum_probs=17.3
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHHcCCC
Q 020333 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 136 ~VLVHC~~G~sRS~tvv~AYLm~~~~~s 163 (327)
.|+|+|..|. ||.. +++++...|..
T Consensus 68 ~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 68 ELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred eEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 8999999985 6643 34555666653
No 191
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=21.02 E-value=40 Score=21.31 Aligned_cols=9 Identities=33% Similarity=0.907 Sum_probs=4.2
Q ss_pred eCcCCCCCc
Q 020333 287 SCAHCEARL 295 (327)
Q Consensus 287 ~Cp~C~~kl 295 (327)
+||.|++.|
T Consensus 2 fC~~CG~~l 10 (34)
T PF14803_consen 2 FCPQCGGPL 10 (34)
T ss_dssp B-TTT--B-
T ss_pred ccccccChh
Confidence 599999887
No 192
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.00 E-value=3.1e+02 Score=27.21 Aligned_cols=66 Identities=21% Similarity=0.195 Sum_probs=43.8
Q ss_pred HHHHHhCC-cEEEEcCCCCchh---HHHHHHHHHHHcCCCHHHHHHHHHhhcc----------ccCCCCccccCcccCCC
Q 020333 128 IDRRRKEG-GVLVHCFAGVSRS---AAIITAYLMRTEQLSSEGALESLRQSCD----------SYNRGEKIDSSKFGADP 193 (327)
Q Consensus 128 I~~~~~~g-~VLVHC~~G~sRS---~tvv~AYLm~~~~~s~~~A~~~vr~~rp----------~~~~g~~~~~~~~~~~~ 193 (327)
++.+++.| +|.+..-.+.+.+ -.+.++ |+.+++|+++||+..+.-.-- ....|..-|+..|..||
T Consensus 299 ~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~-l~~~~gmtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp 377 (406)
T COG1228 299 ARKLIDAGVKVAIGTDHNPGTSHGSLALEMA-LAVRLGMTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDP 377 (406)
T ss_pred HHHHHHCCCEEEEEcCCCCCchhhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCC
Confidence 56667789 9999999998884 233334 444567999999998764321 23345455666666666
Q ss_pred C
Q 020333 194 G 194 (327)
Q Consensus 194 ~ 194 (327)
.
T Consensus 378 ~ 378 (406)
T COG1228 378 L 378 (406)
T ss_pred h
Confidence 3
No 193
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=20.84 E-value=2.3e+02 Score=25.42 Aligned_cols=54 Identities=22% Similarity=0.166 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHHcCC--C-------HHHHHHHHHhhc
Q 020333 121 LDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQL--S-------SEGALESLRQSC 175 (327)
Q Consensus 121 ~~~~~~fI~~~~~~g-~VLVHC~~G~sRS~tvv~AYLm~~~~~--s-------~~~A~~~vr~~r 175 (327)
++.+.++|....++| ++.+....+ +|+..-++.+|....|+ + ...+..+++++.
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~ 79 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRF 79 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhC
Confidence 567888898888888 666666555 78888888999886665 2 234566676643
No 194
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.78 E-value=46 Score=21.09 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=9.2
Q ss_pred cceeeCcCCCCCc
Q 020333 283 EGKLSCAHCEARL 295 (327)
Q Consensus 283 ~Gkl~Cp~C~~kl 295 (327)
...+.||.|++.+
T Consensus 24 ~~~~~CP~Cg~~~ 36 (41)
T smart00834 24 DPLATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCCCcc
Confidence 3457899998753
No 195
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=20.64 E-value=42 Score=24.18 Aligned_cols=12 Identities=33% Similarity=1.044 Sum_probs=10.8
Q ss_pred cCeeeeccccCC
Q 020333 295 LGYFNWSGIQCS 306 (327)
Q Consensus 295 lG~f~w~G~~Cs 306 (327)
-|.|.|.|+.|.
T Consensus 26 tGkY~W~Gs~~h 37 (66)
T PF06174_consen 26 TGKYQWHGSVCH 37 (66)
T ss_pred cccceeeccccc
Confidence 689999999996
No 196
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=20.51 E-value=4.4e+02 Score=25.26 Aligned_cols=36 Identities=14% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHh---CCcEEEEcCCCCchhHHHHHHHHHH
Q 020333 121 LDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMR 158 (327)
Q Consensus 121 ~~~~~~fI~~~~~---~g~VLVHC~~G~sRS~tvv~AYLm~ 158 (327)
|.+..++|++.++ ..+|...|..|+ |- =-+.|||..
T Consensus 156 FrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~~ 194 (308)
T COG1054 156 FREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMKE 194 (308)
T ss_pred hhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHHH
Confidence 5555666655443 349999999998 54 334455543
No 197
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.51 E-value=71 Score=26.64 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=5.9
Q ss_pred cceeeCcCCC
Q 020333 283 EGKLSCAHCE 292 (327)
Q Consensus 283 ~Gkl~Cp~C~ 292 (327)
..+..|+.|+
T Consensus 68 p~~~~C~~CG 77 (135)
T PRK03824 68 EAVLKCRNCG 77 (135)
T ss_pred ceEEECCCCC
Confidence 3456666665
No 198
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=20.46 E-value=48 Score=20.25 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=8.5
Q ss_pred cceeeCcCCCCCc
Q 020333 283 EGKLSCAHCEARL 295 (327)
Q Consensus 283 ~Gkl~Cp~C~~kl 295 (327)
.+|-.||+|+.+.
T Consensus 11 ~~kY~Cp~C~~~~ 23 (30)
T PF04438_consen 11 PAKYRCPRCGARY 23 (30)
T ss_dssp EESEE-TTT--EE
T ss_pred CCEEECCCcCCce
Confidence 7899999998774
No 199
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=75 Score=26.30 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=9.8
Q ss_pred cceeeCcCCCCCc
Q 020333 283 EGKLSCAHCEARL 295 (327)
Q Consensus 283 ~Gkl~Cp~C~~kl 295 (327)
-+...||+|++-|
T Consensus 67 ~~r~FC~~CGs~l 79 (133)
T COG3791 67 AGRGFCPTCGSPL 79 (133)
T ss_pred CCCeecccCCCce
Confidence 3455899998877
No 200
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.24 E-value=67 Score=26.05 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=16.7
Q ss_pred ccceeeCcCCCCCcCeeeecc-ccCC-CCCc
Q 020333 282 LEGKLSCAHCEARLGYFNWSG-IQCS-CGSW 310 (327)
Q Consensus 282 ~~Gkl~Cp~C~~klG~f~w~G-~~Cs-Cg~~ 310 (327)
..++..|..|+.. ......+ ..|+ ||..
T Consensus 68 vp~~~~C~~Cg~~-~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 68 EKVELECKDCSHV-FKPNALDYGVCEKCHSK 97 (117)
T ss_pred cCCEEEhhhCCCc-cccCCccCCcCcCCCCC
Confidence 5678889888733 2333223 3586 8854
No 201
>KOG3092 consensus Casein kinase II, beta subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=20.21 E-value=52 Score=29.42 Aligned_cols=13 Identities=46% Similarity=0.838 Sum_probs=10.1
Q ss_pred ccccceeeCcCCC
Q 020333 280 GALEGKLSCAHCE 292 (327)
Q Consensus 280 ~~~~Gkl~Cp~C~ 292 (327)
|...-||+||+|.
T Consensus 129 g~~~VklYCP~C~ 141 (216)
T KOG3092|consen 129 GKSTVKLYCPSCE 141 (216)
T ss_pred CcceEEEeCCCcc
Confidence 3456699999995
No 202
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=20.14 E-value=1.1e+02 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=11.0
Q ss_pred cEEEEcCCCCchh
Q 020333 136 GVLVHCFAGVSRS 148 (327)
Q Consensus 136 ~VLVHC~~G~sRS 148 (327)
+|||-|.+|++=|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5899999999755
No 203
>KOG4784 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.11 E-value=65 Score=31.22 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=25.6
Q ss_pred eeee---cccccchhhhcccccceeeCcCCCCCcCeeeecc
Q 020333 265 SIFV---EPLRWMTAVEEGALEGKLSCAHCEARLGYFNWSG 302 (327)
Q Consensus 265 ~~fi---ep~~Wm~~~~~~~~~Gkl~Cp~C~~klG~f~w~G 302 (327)
+||+ +..+|...+. ..-++.|-+|.+-||.+...+
T Consensus 164 sY~lin~~t~e~~~~~~---~~d~~~C~rC~~~lg~~~~~~ 201 (348)
T KOG4784|consen 164 SYLLINLATGEGVKTIA---GNDRVLCSRCKRCLGLFITKD 201 (348)
T ss_pred cEEEEEcccccceeccC---CCCchhhhhhHhhcCcccccc
Confidence 6776 3346776532 367899999999999997643
Done!