BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020334
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/323 (55%), Positives = 237/323 (73%), Gaps = 1/323 (0%)
Query: 5 KGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNA 64
KG+VCVTGGTGF+GSW+I LL++GY V TT+R+DPE K+D+SFLTNLPGASE+L FNA
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNA 60
Query: 65 DLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGTVKRF 124
DL++P+SF AAI GC G+ H A+PID E EE++T+R V+G +GILK+C+ S TVKRF
Sbjct: 61 DLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRF 120
Query: 125 VYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFAEEHGL 184
+YTSSGS V F+GKD D+LDE+ WSD D +R + +G +Y ++KTL E+A LEF E++G+
Sbjct: 121 IYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGI 180
Query: 185 DLVTLIPSFVVGPFICPKFAGSVRSTLAMVLGNREEYSILLNISMVHIDDVARAHIFLLE 244
D+VTLI F+VG F+CPK S+ L +VLG +E+ + MVH+DDVARAHI+LLE
Sbjct: 181 DVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGV-TRFHMVHVDDVARAHIYLLE 239
Query: 245 YPDAKGRYICSSAKLTIQEMAEFLSAKHPEYPIPNVDSLSEIEGYXXXXXXXXXXXDICF 304
GRY CS + I+EM++ LSAK+PEY I VD L EI+G D F
Sbjct: 240 NSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGF 299
Query: 305 TYKYGIDEMFDGAIKCCKERGYL 327
+KY I++MFD AI+CCKE+GYL
Sbjct: 300 DFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 197/331 (59%), Gaps = 10/331 (3%)
Query: 1 MEEQKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQ 60
M Q VCVTG +GFIGSWL+MRLL+ GY V TVR DP + K + L +LP A L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVR-DPTNVKKVKHLLDLPKAETHLT 59
Query: 61 IFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGT 120
++ ADL D SFD AI GC GV HVA P+D + K+ E + + + G +GI+KSC + T
Sbjct: 60 LWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKT 119
Query: 121 VKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFAE 180
V+R V+TSS TV + + DE+ WSD ++ R + Y ++KTL E+AA ++A+
Sbjct: 120 VRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAK 179
Query: 181 EHGLDLVTLIPSFVVGPFICPKFAGSVRSTLAMVLGNREEYSILLNISMVHIDDVARAHI 240
E+ +D +T+IP+ VVGPFI S+ + L+ + GN YSI+ VH+DD+ AHI
Sbjct: 180 ENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHI 239
Query: 241 FLLEYPDAKGRYICSSAKLTIQEMAEFLSAKHPEYPIPN----VDSLSEIEGYXXXXXXX 296
+L E P A+GRYICSS I ++A+ L K+PEY IP VD E
Sbjct: 240 YLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVD-----ENLKSVCFSS 294
Query: 297 XXXXDICFTYKYGIDEMFDGAIKCCKERGYL 327
D+ F +KY +++MF GA+ C+ +G L
Sbjct: 295 KKLTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/338 (36%), Positives = 192/338 (56%), Gaps = 25/338 (7%)
Query: 5 KGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNA 64
K CV GGTGF+ S L+ LL GY V TTVR DP+++K +S L L + L+IF A
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVR-DPDNQKKVSHLLELQELGD-LKIFRA 66
Query: 65 DLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGTVKRF 124
DL D SF+A IAGC V HVA P+ ++ E M + A+ G + ++K+C ++ +VKR
Sbjct: 67 DLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRV 126
Query: 125 VYTSSGSTVYFSGKDVD--MLDETFWSDEDYIR--KLDIWGKSYVLTKTLTERAALEFAE 180
+ TSS + V + D ++DE W+D +++ K WG Y +KTL E+AA +FAE
Sbjct: 127 ILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWG--YPASKTLAEKAAWKFAE 184
Query: 181 EHGLDLVTLIPSFVVGPFICPKFAGSVRSTLAMVLGNREEYSILLN-----------ISM 229
E+ +DL+T+IP+ + G + S+ ++++ GN L+N +S+
Sbjct: 185 ENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNE----FLINGMKGMQMLSGSVSI 240
Query: 230 VHIDDVARAHIFLLEYPDAKGRYICSSAKLTIQEMAEFLSAKHPEYPIPNVDSLSEIEGY 289
H++DV RAHIF+ E A GRYIC +A ++ E+A+FLS ++P+Y +P +
Sbjct: 241 AHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPT--DFGDFPPK 298
Query: 290 XXXXXXXXXXXDICFTYKYGIDEMFDGAIKCCKERGYL 327
F++KYGI+E++D +++ K +G L
Sbjct: 299 SKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 37/274 (13%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNL--------PGASERL 59
V VTG GF+ S ++ +LL+HGY V T RS S L NL PG E
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARS-------ASKLANLQKRWDAKYPGRFETA 66
Query: 60 QIFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSG 119
+ D+ ++D I G AGV H+A+ + K +EV+T A+ GT+ L++ +
Sbjct: 67 VV--EDMLKQGAYDEVIKGAAGVAHIASVVSFSNK-YDEVVTP-AIGGTLNALRAAAATP 122
Query: 120 TVKRFVYTSSGSTVYFSGKDVD--MLDETFWSDE--DYIRKL-------DIWGKSYVLTK 168
+VKRFV TSS + +V+ LDE W+ E D + L +W Y +K
Sbjct: 123 SVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLW--VYAASK 180
Query: 169 TLTERAALEFAEEHG--LDLVTLIPSFVVGPFICPKFAGSVRSTLAMVLGNRE---EYSI 223
T E AA +F +E+ L ++P++ +G P+ S M L N E ++
Sbjct: 181 TEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALAL 240
Query: 224 LLNISMVHIDDVARAHIFLLEYPDAKGRYICSSA 257
+ V D+ H+ L P + R + +A
Sbjct: 241 MPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTA 274
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 119/259 (45%), Gaps = 49/259 (18%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNL--------PGASERL 59
V VTG GF+ S ++ +LL+HGY V T RS S L NL PG E
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARS-------ASKLANLQKRWDAKYPGRFETA 66
Query: 60 QIFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSG 119
+ D ++D I G AGV H+A+ + K +EV+T A+ GT+ L++ +
Sbjct: 67 VV--EDXLKQGAYDEVIKGAAGVAHIASVVSFSNK-YDEVVTP-AIGGTLNALRAAAATP 122
Query: 120 TVKRFVYTSSGSTVYFSGKDVD--MLDETFWSDE--DYIRKL-------DIWGKSYVLTK 168
+VKRFV TSS + +V+ LDE W+ E D + L +W Y +K
Sbjct: 123 SVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLW--VYAASK 180
Query: 169 TLTERAALEFAEEHG--LDLVTLIPSFVVGPFICPK-------------FAGSVRSTLAM 213
T E AA +F +E+ L ++P++ +G P+ F G V LA
Sbjct: 181 TEAELAAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALA- 239
Query: 214 VLGNREEYSILLNISMVHI 232
L + Y ++I ++H+
Sbjct: 240 -LXPPQYYVSAVDIGLLHL 257
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 112/275 (40%), Gaps = 32/275 (11%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKD-LSFLTNLPG-----ASERLQ 60
++ VTGG GFIGS + +LL Y V +D D L++ N A RL+
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAY---PDVPADEVIVLDSLTYAGNRANLAPVDADPRLR 58
Query: 61 IFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGK-ETEEVMTQRAVNGTIGILKSCLKSG 119
+ D+ D + G ++H AA +D V T+ V GT +L+ + +G
Sbjct: 59 FVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG 118
Query: 120 TVKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFA 179
V R V+ S+ + VY S +D W++ + Y +K ++ A +
Sbjct: 119 -VGRVVHVST-NQVYGS------IDSGSWTESSPLEP----NSPYAASKAGSDLVARAYH 166
Query: 180 EEHGLDLVTLIPSFVVGPFICPKFAGSVRSTLAMVLGNREEYSILLNI-SMVHIDDVARA 238
+GLD+ GP+ P+ + T + G Y N+ VH DD R
Sbjct: 167 RTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRG 226
Query: 239 HIFLLEYPDAKGR-----YICSSAKLTIQEMAEFL 268
+L A GR +I +LT +E+ L
Sbjct: 227 IALVL----AGGRAGEIYHIGGGLELTNRELTGIL 257
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 32/275 (11%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKD-LSFLTNLPG-----ASERLQ 60
++ VTGG GFIGS + +LL Y V +D D L++ N A RL+
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAY---PDVPADEVIVLDSLTYAGNRANLAPVDADPRLR 58
Query: 61 IFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGK-ETEEVMTQRAVNGTIGILKSCLKSG 119
+ D+ D + G ++H AA +D V T+ V GT +L+ + +G
Sbjct: 59 FVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG 118
Query: 120 TVKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFA 179
V R V+ S+ VY S +D W++ + Y +K ++ A +
Sbjct: 119 -VGRVVHVST-DEVYGS------IDSGSWTESSPLEP----NSPYAASKAGSDLVARAYH 166
Query: 180 EEHGLDLVTLIPSFVVGPFICPKFAGSVRSTLAMVLGNREEYSILLNI-SMVHIDDVARA 238
+GLD+ GP+ P+ + T + G Y N+ VH DD R
Sbjct: 167 RTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRG 226
Query: 239 HIFLLEYPDAKGR-----YICSSAKLTIQEMAEFL 268
+L A GR +I +LT +E+ L
Sbjct: 227 IALVL----AGGRAGEIYHIGGGLELTNRELTGIL 257
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 6 GKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPG--ASERLQIFN 63
G +TG TGF+G++LI L + + + +R+D E +TNL + E +++
Sbjct: 151 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMML 210
Query: 64 ADLN----DPESFDAAI--AGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLK 117
+++ D E D + +IH A D G + E + V GT+ +++ L
Sbjct: 211 SNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDE--FEKVNVQGTVDVIR--LA 266
Query: 118 SGTVKRFVYTSSGST-VYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAAL 176
R +Y S+ S YF D+D D TF S+ D + K + Y +K +E L
Sbjct: 267 QQHHARLIYVSTISVGTYF---DIDTEDVTF-SEAD-VYKGQLLTSPYTRSKFYSELKVL 321
Query: 177 EFAEEHGLD 185
E A +GLD
Sbjct: 322 E-AVNNGLD 329
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 7 KVCVTGGTGFIGSWLIMRLLD-HGYFVTTTVR-----SDPEHKKDLSFLTNLPGASERLQ 60
K+ VTGG GFIGS I +L+ H + + S+P + KDL R
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLE-------DDPRYT 57
Query: 61 IFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGK-ETEEVMTQRAVNGTIGILKSCLKSG 119
D+ D E + GV+H+AA +D + E+ V GT +L+S +
Sbjct: 58 FVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRREN 117
Query: 120 TVKRFVYTSS 129
RFV+ S+
Sbjct: 118 PEVRFVHVST 127
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 115/270 (42%), Gaps = 38/270 (14%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADLN 67
+ VTGG GFIGS ++ +L + V S N +E ++ ADL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSS----------GNEEFVNEAARLVKADLA 53
Query: 68 DPESFDAAIAGCAGVIHVAAPIDID-GKETEEVMTQRAVNGTIGILKSCLKSGTVKRFVY 126
+ D + G V H+AA D+ G E + + + V T +L++ K+G V R V+
Sbjct: 54 ADDIKD-YLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-VSRIVF 111
Query: 127 TSSGSTVYFSGKDVDMLDETFWSDEDY-IRKLDIWGKSYVLTKTLTERAALEFAEEHGLD 185
TS+ STVY K + + EDY + ++G S + + L E H D
Sbjct: 112 TST-STVYGEAKVIP-------TPEDYPTHPISLYGASKLACEALIESYC------HTFD 157
Query: 186 LVTLIPSF--VVGPFICPKFAGSVRSTLAMVLGNREEYSIL----LNISMVHIDDVARAH 239
+ I F V+G G + + + N EE IL N S ++I D A
Sbjct: 158 MQAWIYRFANVIGR---RSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAM 214
Query: 240 IFLLEYPDAKGRY-ICSSAKLTIQEMAEFL 268
+F L + + I S ++ ++ +AE +
Sbjct: 215 LFGLRGDERVNIFNIGSEDQIKVKRIAEIV 244
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 5 KGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNA 64
KG + VTGG G+IGS + LL HGY V ++ ++ + + G +
Sbjct: 5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFH--ET 62
Query: 65 DLNDPES----FDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGT 120
D++D + FDA A IH AA + + + R ++ L ++
Sbjct: 63 DVSDERALARIFDAHPITAA--IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA 120
Query: 121 VKRFVYTSSGSTVYFSGKDVDMLDETF 147
VKR V++SS +TVY + +DETF
Sbjct: 121 VKRIVFSSS-ATVY-GVPERSPIDETF 145
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
++ VTGG GFIGS L+ +L++ GY V + + G S L + DL
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVV-----------VDIVQRDTGGSAELHV--RDL 48
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT-QRAVNGTIGILKSCLKSGTVKRFV 125
D S+ A I G V H AA ++ TE ++ V T +L+ ++G R V
Sbjct: 49 KD-YSWGAGIKGDV-VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGV--RTV 104
Query: 126 YTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFAEEHGLD 185
+S STVY D D++ +E+ + + ++G + K E +A G+
Sbjct: 105 VFASSSTVY---GDADVIPT---PEEEPYKPISVYGAA----KAAGEVMCATYARLFGVR 154
Query: 186 LVTLIPSFVVGP 197
+ + + VVGP
Sbjct: 155 CLAVRYANVVGP 166
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 19/189 (10%)
Query: 6 GKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNL------PGASERL 59
G +TG TGF+G++LI L + + + +R+D E TNL L
Sbjct: 70 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLXTNLNDYFSEETVEXXL 129
Query: 60 QIFNADLNDPESFDAAI--AGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLK 117
+ D E D + +IH A D G + E + V GT+ +++ L
Sbjct: 130 SNIEVIVGDFECXDDVVLPENXDTIIHAGARTDHFGDDDE--FEKVNVQGTVDVIR--LA 185
Query: 118 SGTVKRFVYTSSGST-VYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAAL 176
R +Y S+ S YF D+D D TF S+ D + K + Y +K +E L
Sbjct: 186 QQHHARLIYVSTISVGTYF---DIDTEDVTF-SEAD-VYKGQLLTSPYTRSKFYSELKVL 240
Query: 177 EFAEEHGLD 185
E A +GLD
Sbjct: 241 E-AVNNGLD 248
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
++ VTGG GFIGS L+ +L++ GY V D F+ P A ++ DL
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVV---DNLSSGRREFVN--PSAELHVR----DL 52
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT-QRAVNGTIGILKSCLKSGTVKRFV 125
D S+ A I G V H AA ++ TE ++ V T +L+ ++G R V
Sbjct: 53 KD-YSWGAGIKGDV-VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGV--RTV 108
Query: 126 YTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFAEEHGLD 185
+S STVY D D++ +E+ + + ++G + K E +A G+
Sbjct: 109 VFASSSTVY---GDADVIPT---PEEEPYKPISVYGAA----KAAGEVMCATYARLFGVR 158
Query: 186 LVTLIPSFVVGP 197
+ + + VVGP
Sbjct: 159 CLAVRYANVVGP 170
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 3 EQKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRS------DPEH----KKDLSFLTNL 52
E+ K+ + G +GF+GS L+ L+ G+ VT VR + EH K D+S L +
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEV 61
Query: 53 ----PGASERLQIFNADLNDPESFDAAI 76
GA + FN N+P+ +D I
Sbjct: 62 CEVCKGADAVISAFNPGWNNPDIYDETI 89
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 39/253 (15%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLP-GASER----LQI 61
+V VTGG GFIGS ++ LL G +++ L NL G E +
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGL--------------EVAVLDNLATGKRENVPKGVPF 47
Query: 62 FNADLNDPESFDAAIA--GCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSG 119
F DL D E + A V H AA + + V+ L +
Sbjct: 48 FRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY 107
Query: 120 TVKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFA 179
V++ V+ S+G +Y + + +ET W Y +K E +
Sbjct: 108 GVEKLVFASTGGAIYGEVPEGERAEET-WPPRPK--------SPYAASKAAFEHYLSVYG 158
Query: 180 EEHGLDLVTLIPSFVVGPFICPK--------FAGSVRSTLAMVLGNREEYSILLNIS-MV 230
+ +GL V+L V GP P FA V L + L R+ + V
Sbjct: 159 QSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYV 218
Query: 231 HIDDVARAHIFLL 243
++ DVA AH L
Sbjct: 219 YVGDVAEAHALAL 231
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
KV VTGG G+IGS ++ LL+ GY V D H +LP + R+Q
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYL---PVVIDNFHNA-FRGGGSLPESLRRVQELTGRS 59
Query: 67 NDPESFDAAIAGC----------AGVIHVAAPIDIDGKETEEVMTQRAVN--GTIGILKS 114
+ E D G VIH A + G+ ++ + VN GTI +L+
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAG-LKAMGESVQKPLDYYRVNLTGTIQLLE- 117
Query: 115 CLKSGTVKRFVYTSSGSTVY 134
+K+ VK V++SS +TVY
Sbjct: 118 IMKAHGVKNLVFSSS-ATVY 136
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
KV VTGG G+IGS ++ LL+ GY V D H +LP + R+Q
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYL---PVVIDNFHNA-FRGGGSLPESLRRVQELTGRS 59
Query: 67 NDPESFDAAIAGC----------AGVIHVAAPIDIDGKETEEVMTQRAVN--GTIGILKS 114
+ E D G VIH A + G+ ++ + VN GTI +L+
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAG-LKAVGESVQKPLDYYRVNLTGTIQLLE- 117
Query: 115 CLKSGTVKRFVYTSSGSTVY 134
+K+ VK V++SS +TVY
Sbjct: 118 IMKAHGVKNLVFSSS-ATVY 136
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
KV VTGG G+IGS ++ LL+ GY V D H +LP + R+Q
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYL---PVVIDNFHNA-FRGGGSLPESLRRVQELTGRS 59
Query: 67 NDPESFDAAIAGC----------AGVIHVAAPIDIDGKETEEVMTQRAVN--GTIGILKS 114
+ E D G VIH A + G+ ++ + VN GTI +L+
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAG-LKAVGESVQKPLDYYRVNLTGTIQLLE- 117
Query: 115 CLKSGTVKRFVYTSSGSTVY 134
+K+ VK V++SS +TVY
Sbjct: 118 IMKAHGVKNLVFSSS-ATVY 136
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 12/148 (8%)
Query: 1 MEEQKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQ 60
ME+ + ++ +TGG GF+GS L +L+ G+ VT K+++ E +
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI----GHENFE 56
Query: 61 IFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGT 120
+ N D+ +P + + H+A+P + T + TIG L +
Sbjct: 57 LINHDVVEPLYIE-----VDQIYHLASPASPPNYMYNPIKTLKT--NTIGTLNMLGLAKR 109
Query: 121 VKRFVYTSSGSTVYFSGKDVDMLDETFW 148
V + +S S VY +V E +W
Sbjct: 110 VGARLLLASTSEVY-GDPEVHPQSEDYW 136
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F+++SS +TVY
Sbjct: 117 KNFIFSSS-ATVY 128
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F+++SS +TVY
Sbjct: 117 KNFIFSSS-ATVY 128
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F+++SS +TVY
Sbjct: 117 KNFIFSSS-ATVY 128
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F+++SS +TVY
Sbjct: 117 KNFIFSSS-ATVY 128
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKK-DLSFLTNLPGASERLQIFNADL 66
+ +TGGTG G + ++LD V S E K+ +++ N P R++ F D+
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDP----RMRFFIGDV 79
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDGKETEEV-MTQRAVNGTIGILKSCLKSG 119
D E + A+ G IH AA + E + + + G ++ +CLK+
Sbjct: 80 RDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA 133
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F++ SS +TVY
Sbjct: 117 KNFIF-SSAATVY 128
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F++ SS +TVY
Sbjct: 117 KNFIF-SSAATVY 128
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F++ SS +TVY
Sbjct: 117 KNFIF-SSAATVY 128
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F++ SS +TVY
Sbjct: 117 KNFIF-SSAATVY 128
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F+++S+ +TVY
Sbjct: 117 KNFIFSST-ATVY 128
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 39/267 (14%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGY---FVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNA 64
V VTGG G+IGS ++ L+++GY S + L LT + +
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT-----KHHIPFYEV 68
Query: 65 DLNDPESFDAAIA--GCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIG--ILKSCLKSGT 120
DL D + + VIH A + E+ ++ + N +G +L ++
Sbjct: 69 DLCDRKGLEKVFKEYKIDSVIHFAGLKAVG--ESTQIPLRYYHNNILGTVVLLELMQQYN 126
Query: 121 VKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKS-YVLTKTL-----TERA 174
V +FV++SS +TVY G + +E + + +G + Y + L +++
Sbjct: 127 VSKFVFSSS-ATVY--GDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKK 183
Query: 175 ALEFAEEHGLDLVTLIPSFVVG--PFICPKFAGSVRSTLAMV-LGNREEYSILLN----- 226
+ +FA + + PS ++G P P ++ +A V +G RE+ I +
Sbjct: 184 SWKFAILRYFNPIGAHPSGLIGEDPLGIPN---NLLPYMAQVAVGRREKLYIFGDDYDSR 240
Query: 227 -----ISMVHIDDVARAHIFLLEYPDA 248
+H+ D+A+ HI L+Y +A
Sbjct: 241 DGTPIRDYIHVVDLAKGHIAALQYLEA 267
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 4 QKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFN 63
Q +V VTG TGF GSWL + L + G V P + L + ++ ++
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPT----VPSLFEIVRLNDLMESHI 63
Query: 64 ADLNDPESFDAAIAGCAG--VIHVAAPIDIDGKETEEVMT-QRAVNGTIGILKSCLKSGT 120
D+ D E ++IA V H+AA + + + T V GT+ +L++ + G
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 121 VKRFVYTSS 129
+K V +S
Sbjct: 124 IKAVVNITS 132
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 12/147 (8%)
Query: 2 EEQKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQI 61
E+ + ++ +TGG GF+GS L +L G+ VT K+++ E ++
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWI----GHENFEL 79
Query: 62 FNADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGTV 121
N D+ +P + + H+A+P + T + TIG L + V
Sbjct: 80 INHDVVEPLYIE-----VDQIYHLASPASPPNYXYNPIKTLKT--NTIGTLNXLGLAKRV 132
Query: 122 KRFVYTSSGSTVYFSGKDVDMLDETFW 148
+ +S S VY +V E +W
Sbjct: 133 GARLLLASTSEVY-GDPEVHPQSEDYW 158
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERL---QIFN 63
+V VTGG+G+IGS ++LL +G+ V + L + L G I N
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTV 121
L D AI VIH A + G+ ++ + VNGT+ ++ S +++ V
Sbjct: 62 EALMTEILHDHAI---DTVIHFAG-LKAVGESVQKPLEYYDNNVNGTLRLI-SAMRAANV 116
Query: 122 KRFVYTSSGSTVY 134
K F++ SS +TVY
Sbjct: 117 KNFIF-SSVATVY 128
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 113/284 (39%), Gaps = 36/284 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVT-----TTVRSDPEHKKDLSFLTNLPGASERLQI 61
KV +TG G IGS + LL+ G V T R EH KD LT + G+ +
Sbjct: 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRR--EHLKDHPNLTFVEGSIADHAL 80
Query: 62 FNADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGTV 121
N + D + DA V+H AA + +T V G+ + K V
Sbjct: 81 VNQLIGDLQP-DA-------VVHTAASYKDPDDWYNDTLTN-CVGGSNVV--QAAKKNNV 129
Query: 122 KRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFAEE 181
RFVY + + + K + D+ R + SY ++K+ E ++ E
Sbjct: 130 GRFVYFQT--ALCYGVKPIQQPVRL-----DHPR--NPANSSYAISKSANE----DYLEY 176
Query: 182 HGLDLVTLIPSFVVGPFICPKFAGSVRSTLAMVLGNREEYSILLNISMVHIDDVARAHIF 241
GLD VT + VVGP +G + + ++ + V + D+ARA +
Sbjct: 177 SGLDFVTFRLANVVGPR---NVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVR 233
Query: 242 LLEYPDAKGRYICSSAKLTIQEMAEFL--SAKHPEYPIPNVDSL 283
++ + S + I+E+ + + + P YP P + L
Sbjct: 234 AVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIREL 277
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 102/252 (40%), Gaps = 42/252 (16%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADLN 67
+ VTGG GFIGS ++ L D G +T + D + KD + NL + + AD
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKG--ITDILVVD--NLKDGTKFVNL------VDLNIADYM 51
Query: 68 DPESFDAAI-AG-----CAGVIHVAA---PIDIDGKETEEVMTQRAVNGTIGILKSCLKS 118
D E F I AG + H A + DGK M + +L CL+
Sbjct: 52 DKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTEWDGK----YMMDNNYQYSKELLHYCLER 107
Query: 119 GTVKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEF 178
F+Y SS +T + G+ D ++ +Y + L+++G S K L + +
Sbjct: 108 EI--PFLYASSAAT--YGGRTSDFIES-----REYEKPLNVYGYS----KFLFDEYVRQI 154
Query: 179 AEEHGLDLVTLIPSFVVGPFICPKFA-GSVRSTLAMVLGNRE-----EYSILLNISMVHI 232
E +V V GP K + SV L L N E E S V++
Sbjct: 155 LPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYV 214
Query: 233 DDVARAHIFLLE 244
DVA +++ LE
Sbjct: 215 GDVADVNLWFLE 226
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
++ VTG G +G + RL + L+ L+ L A + DL
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILR------------LADLSPLDPAGPNEECVQCDL 52
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGTVKRFVY 126
D + +A +AGC G++H+ I ++ E + Q + G + ++ G R V+
Sbjct: 53 ADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAARAHGQ-PRIVF 108
Query: 127 TSSGSTVYF 135
SS T+ +
Sbjct: 109 ASSNHTIGY 117
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
++ VTG G +G + RL + L+ L+ L A + DL
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILR------------LADLSPLDPAGPNEECVQCDL 52
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGTVKRFVY 126
D + +A +AGC G++H+ I ++ E + Q + G + ++ G R V+
Sbjct: 53 ADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAARAHGQ-PRIVF 108
Query: 127 TSSGSTVYF 135
SS T+ +
Sbjct: 109 ASSNHTIGY 117
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 4 QKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFN 63
Q + VTGG GFIGS + + ++ V TV + + + L + G +R+++
Sbjct: 3 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG--DRVELVV 60
Query: 64 ADLNDPESFDAAIAGCAGVIHVAA 87
D+ D E D A ++H AA
Sbjct: 61 GDIADAELVDKLAAKADAIVHYAA 84
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 102/252 (40%), Gaps = 42/252 (16%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADLN 67
+ VTGG GFIGS ++ L D G +T + D + KD + NL + + AD
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKG--ITDILVVD--NLKDGTKFVNL------VDLNIADYM 98
Query: 68 DPESFDAAI-AG-----CAGVIHVAA---PIDIDGKETEEVMTQRAVNGTIGILKSCLKS 118
D E F I AG + H A + DGK M + +L CL+
Sbjct: 99 DKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGK----YMMDNNYQYSKELLHYCLER 154
Query: 119 GTVKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEF 178
F+Y SS +T + G+ D ++ +Y + L+++G S K L + +
Sbjct: 155 EIP--FLYASSAAT--YGGRTSDFIES-----REYEKPLNVFGYS----KFLFDEYVRQI 201
Query: 179 AEEHGLDLVTLIPSFVVGPFICPKFA-GSVRSTLAMVLGNRE-----EYSILLNISMVHI 232
E +V V GP K + SV L L N E E S V++
Sbjct: 202 LPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYV 261
Query: 233 DDVARAHIFLLE 244
DVA +++ LE
Sbjct: 262 GDVADVNLWFLE 273
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGAS----ERLQIFN 63
+ VTG TG +G +I LL + P + ++ + N+ AS + +++ +
Sbjct: 3 IAVTGATGQLGGLVIQHLL----------KKVPA-SQIIAIVRNVEKASTLADQGVEVRH 51
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAP 88
D N PES A AG + ++ ++ P
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGP 76
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGAS----ERLQIFN 63
+ VTG TG +G +I LL + P + ++ + N+ AS + +++ +
Sbjct: 3 IAVTGATGQLGGLVIQHLL----------KKVPA-SQIIAIVRNVEKASTLADQGVEVRH 51
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAP 88
D N PES A AG + ++ ++ P
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGP 76
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/255 (19%), Positives = 104/255 (40%), Gaps = 37/255 (14%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADLN 67
+ + GG G+IGS + +L+D G V H+ + +E + +N DL
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI---------TEGAKFYNGDLR 54
Query: 68 DPESFDAAIA--GCAGVIHVAAPIDIDGKETEEVMT--QRAVNGTIGILKSCLKSGTVKR 123
D V+H AA + G E+ + V G + +L+ + V +
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAAD-SLVGVSMEKPLQYYNNNVYGALCLLE-VMDEFKVDK 112
Query: 124 FVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTL----TERAALEFA 179
F+++S+ +T + DVD++ E E + +G++ + + + ++ + L +
Sbjct: 113 FIFSSTAAT--YGEVDVDLITE-----ETMTNPTNTYGETKLAIEKMLHWYSQASNLRYK 165
Query: 180 EEHGLDLVTLIPSFVVGPFICPKFAGSVRSTLAMVLGNREEYSILLN----------ISM 229
++ P+ ++G P+ + L + LG RE+ + +
Sbjct: 166 IFRYFNVAGATPNGIIGEDHRPE-THLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDY 224
Query: 230 VHIDDVARAHIFLLE 244
+H++D+ AH L+
Sbjct: 225 IHVEDLVAAHFLGLK 239
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 10 VTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASE--RLQIFNADLN 67
+TG GFIGS L+ LL V H+++L + +L + + D+
Sbjct: 32 ITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIR 91
Query: 68 DPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVN--GTIGILKSCLKSGTVKRFV 125
+ + + A AG V+H AA + + + +T A N G + +L + + V+ F
Sbjct: 92 NLDDCNNACAGVDYVLHQAALGSVP-RSINDPITSNATNIDGFLNMLIAA-RDAKVQSFT 149
Query: 126 YTSSGST 132
Y +S ST
Sbjct: 150 YAASSST 156
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 24/198 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
K+ +TG GFI S + RL G++V + EH + F + DL
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD---------EFHLVDL 81
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDG--KETEEVMTQRAVNGTIGILKSCLKSGTVKRF 124
E+ G V ++AA + G + V+ + ++++ +G +KRF
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRF 140
Query: 125 VYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIW----GKSYVLTKTLTERAALEFAE 180
Y SS + +Y K ++ + + +++ D W +Y L K TE + +
Sbjct: 141 FYASS-ACIYPEFKQLETTNVS-------LKESDAWPAEPQDAYGLEKLATEELCKHYNK 192
Query: 181 EHGLDLVTLIPSFVVGPF 198
+ G++ + GPF
Sbjct: 193 DFGIECRIGRFHNIYGPF 210
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 24/198 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
K+ +TG GFI S + RL G++V + EH + F + DL
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD---------EFHLVDL 81
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDG--KETEEVMTQRAVNGTIGILKSCLKSGTVKRF 124
E+ G V ++AA + G + V+ + ++++ +G +KRF
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRF 140
Query: 125 VYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIW----GKSYVLTKTLTERAALEFAE 180
Y SS + +Y K ++ + + +++ D W +Y L K TE + +
Sbjct: 141 FYASS-ACIYPEFKQLETTNVS-------LKESDAWPAEPQDAYGLEKLATEELCKHYNK 192
Query: 181 EHGLDLVTLIPSFVVGPF 198
+ G++ + GPF
Sbjct: 193 DFGIECRIGRFHNIYGPF 210
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 117/277 (42%), Gaps = 38/277 (13%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
+ +TG GF+G +L L + V T R++ LP +++ + D+
Sbjct: 14 RALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE---------AKLPN----VEMISLDI 60
Query: 67 NDPESFDAAIAGCAG--VIHVAAPIDI-DGKETEEVMTQRAVNGTIGILKSCLKSGTVKR 123
D + I+ + H+AA + D ++ V GT+ +L + S R
Sbjct: 61 MDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCR 120
Query: 124 FVYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIWGKSYVLTKTLTERAALEFAEEHG 183
+ + GS+ + + + +E+ S+E+ +R + +G ++K A ++ + +G
Sbjct: 121 IL--TIGSSEEYG---MILPEESPVSEENQLRPMSPYG----VSKASVGMLARQYVKAYG 171
Query: 184 LDLVTLIPSFVVGP-----FICPKFAGSVRSTLAMVLGNREEYSILLNISMVH----IDD 234
+D++ +GP F+ FA + + + + +E + N+ V + D
Sbjct: 172 MDIIHTRTFNHIGPGQSLGFVTQDFA---KQIVDIEMEKQEPIIKVGNLEAVRDFTDVRD 228
Query: 235 VARAHIFLLEYPDAKGRY-ICSSAKLTIQEMAEFLSA 270
+ +A+ L +Y Y +CS IQ++ + L A
Sbjct: 229 IVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLA 265
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 24/198 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
K+ +TG GFI S + RL G++V + EH + F + DL
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD---------EFHLVDL 81
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDG--KETEEVMTQRAVNGTIGILKSCLKSGTVKRF 124
E+ G V ++AA + G + V+ + ++++ +G +KRF
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRF 140
Query: 125 VYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIW----GKSYVLTKTLTERAALEFAE 180
Y SS + +Y K ++ + + +++ D W +Y L + TE + +
Sbjct: 141 FYASS-ACIYPEFKQLETTNVS-------LKESDAWPAEPQDAYGLERLATEELCKHYNK 192
Query: 181 EHGLDLVTLIPSFVVGPF 198
+ G++ + GPF
Sbjct: 193 DFGIECRIGRFHNIYGPF 210
>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
Length = 264
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 10 VTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADLNDP 69
+T GT +G + +LL GY VT T SD + + ERLQ AD+
Sbjct: 12 ITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMK--ETYKDVEERLQFVQADVTKK 69
Query: 70 ESF 72
E
Sbjct: 70 EDL 72
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 5 KGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNA 64
+ ++ + G TG+IG + LD G+ VR + SE+ Q+
Sbjct: 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRE-----------STASSNSEKAQLL-- 50
Query: 65 DLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIG---------ILKSC 115
ESF A+ A ++H ID E V V T+G I+K+
Sbjct: 51 -----ESFKAS---GANIVH--GSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAI 100
Query: 116 LKSGTVKRFVYTSSGSTV 133
+ GTVKRF + G+ V
Sbjct: 101 KEVGTVKRFFPSEFGNDV 118
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 24/198 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
K+ +TG GFI S + RL G++V + EH + F + DL
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCD---------EFHLVDL 81
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDG--KETEEVMTQRAVNGTIGILKSCLKSGTVKRF 124
E+ G V ++AA + G + V+ + ++++ +G +KRF
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRF 140
Query: 125 VYTSSGSTVYFSGKDVDMLDETFWSDEDYIRKLDIW----GKSYVLTKTLTERAALEFAE 180
Y SS + +Y K ++ + + +++ D W ++ L K TE + +
Sbjct: 141 FYASS-ACIYPEFKQLETTNVS-------LKESDAWPAEPQDAFGLEKLATEELCKHYNK 192
Query: 181 EHGLDLVTLIPSFVVGPF 198
+ G++ + GPF
Sbjct: 193 DFGIECRIGRFHNIYGPF 210
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1 MEEQKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEH 42
+ ++G V VTG TG +GS + L GY V + EH
Sbjct: 146 LTPERGPVLVTGATGGVGSLAVSXLAKRGYTVEASTGKAAEH 187
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGAS----ERLQIFN 63
+ VTG TG +G +I L + + ++ + N+ AS + +++ +
Sbjct: 3 IAVTGATGQLGGLVIQHL-----------XAAVPASQIIAIVRNVEKASTLADQGVEVRH 51
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAP 88
D N PES A AG + ++ ++ P
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGP 76
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 8 VCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGAS----ERLQIFN 63
+ VTG TG +G +I L + + ++ + N+ AS + +++ +
Sbjct: 3 IAVTGATGQLGGLVIQHL-----------XAAVPASQIIAIVRNVEKASTLADQGVEVRH 51
Query: 64 ADLNDPESFDAAIAGCAGVIHVAAP 88
D N PES A AG + ++ ++ P
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGP 76
>pdb|1M3D|C Chain C, Structure Of Type Iv Collagen Nc1 Domains
pdb|1M3D|F Chain F, Structure Of Type Iv Collagen Nc1 Domains
pdb|1M3D|I Chain I, Structure Of Type Iv Collagen Nc1 Domains
pdb|1M3D|L Chain L, Structure Of Type Iv Collagen Nc1 Domains
pdb|1T60|C Chain C, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|F Chain F, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|I Chain I, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|L Chain L, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|O Chain O, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|R Chain R, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|U Chain U, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|X Chain X, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T61|C Chain C, Crystal Structure Of Collagen Iv Nc1 Domain From Placenta
Basement Membrane
pdb|1T61|F Chain F, Crystal Structure Of Collagen Iv Nc1 Domain From Placenta
Basement Membrane
Length = 227
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 102 QRAVNGTIGILKSCLKSGTVKRFVYTSSGSTVYFSGKDVDMLDETFW 148
++A N +G+ SCL + F+Y + G Y++ ++ D+++W
Sbjct: 39 EKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRN----DKSYW 81
>pdb|1LI1|C Chain C, The 1.9-A Crystal Structure Of The Noncollagenous (Nc1)
Domain Of Human Placenta Collagen Iv Shows Stabilization
Via A Novel Type Of Covalent Met-Lys Cross-Link
pdb|1LI1|F Chain F, The 1.9-A Crystal Structure Of The Noncollagenous (Nc1)
Domain Of Human Placenta Collagen Iv Shows Stabilization
Via A Novel Type Of Covalent Met-Lys Cross-Link
Length = 228
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 102 QRAVNGTIGILKSCLKSGTVKRFVYTSSGSTVYFSGKDVDMLDETFW 148
++A N +G+ SCL + F+Y + G Y++ ++ D+++W
Sbjct: 40 EKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRN----DKSYW 82
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 24/134 (17%)
Query: 5 KGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNA 64
KG+V + G TGFIG ++ LD H+ P + + +IF A
Sbjct: 10 KGRVLIAGATGFIGQFVATASLD-------------AHRPTYILARPGPRSPSKAKIFKA 56
Query: 65 DLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNG-----TIGILKSCLKSG 119
L D AI G+I+ ++ KE E + V G I ++K+ G
Sbjct: 57 -LED----KGAII-VYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVG 110
Query: 120 TVKRFVYTSSGSTV 133
T+KRF+ + G V
Sbjct: 111 TIKRFLPSEFGHDV 124
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 10 VTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASE--RLQIFNADLN 67
+TG GFIGS L+ +LL V H+ +L + L + R D+
Sbjct: 30 ITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR 89
Query: 68 DPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRA-VNGTIGILKSCLKSGTVKRFVY 126
D + + + G V+H AA + + + T + G + IL + K+ V+ F Y
Sbjct: 90 DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA-KNAQVQSFTY 148
Query: 127 TSSGST 132
+S ST
Sbjct: 149 AASSST 154
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 10 VTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASE--RLQIFNADLN 67
+TG GFIGS L+ +LL V H+ +L + L + R D+
Sbjct: 24 ITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR 83
Query: 68 DPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRA-VNGTIGILKSCLKSGTVKRFVY 126
D + + + G V+H AA + + + T + G + IL + K+ V+ F Y
Sbjct: 84 DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA-KNAQVQSFTY 142
Query: 127 TSSGST 132
+S ST
Sbjct: 143 AASSST 148
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 10 VTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASE--RLQIFNADLN 67
+TG GFIGS L+ +LL V H+ +L + L + R D+
Sbjct: 30 ITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR 89
Query: 68 DPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRA-VNGTIGILKSCLKSGTVKRFVY 126
D + + + G V+H AA + + + T + G + IL + K+ V+ F Y
Sbjct: 90 DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA-KNAQVQSFTY 148
Query: 127 TSSGST 132
+S ST
Sbjct: 149 AASSST 154
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 111/287 (38%), Gaps = 74/287 (25%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRS-------DPEHKKDLSFLTNLPGASERL 59
K+ VTGGTGF+G +++ + + G RS D E++ L +L
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLIN----- 58
Query: 60 QIFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETE----EVMTQRAVNGTIGILKSC 115
LND ++ V+H+AA GK +E E++TQ + +C
Sbjct: 59 -----QLNDVDA----------VVHLAATRGSQGKISEFHDNEILTQN-------LYDAC 96
Query: 116 LKSGTVKRFVYTSSGSTVYFSGKDVDMLDETF--WSDEDYIRKLDIWGKSYVLTKTLTER 173
++ + VY S+ S DET W++ ++L + Y ++K E
Sbjct: 97 YEN-NISNIVYASTISA---------YSDETSLPWNE----KELPLPDLXYGVSKLACEH 142
Query: 174 AALEFAEEHGLDLVTL----------IPSFVVGPFICPKFAGSVRSTLAMVLGNREEYSI 223
++ + GL + L ++ + F F G + A + RE
Sbjct: 143 IGNIYSRKKGLCIKNLRFAHLYGFNEKNNYXINRFFRQAFHGEQLTLHANSVAKRE---- 198
Query: 224 LLNISMVHIDDVARAHIFLLEYPDAKGRY-ICSSAKLTIQEMAEFLS 269
++ D A++ I+ L+ G + I S LT E+A ++
Sbjct: 199 -----FLYAKDAAKSVIYALKQEKVSGTFNIGSGDALTNYEVANTIN 240
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 10 VTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASE--RLQIFNADLN 67
+TG GFIGS L+ +LL V H+ +L + L + R D+
Sbjct: 43 ITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR 102
Query: 68 DPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRA-VNGTIGILKSCLKSGTVKRFVY 126
D + + + G V+H AA + + + T + G + IL + K+ V+ F Y
Sbjct: 103 DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA-KNAQVQSFTY 161
Query: 127 TSSGST 132
+S ST
Sbjct: 162 AASSST 167
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHG 29
V V GG GF+GS L+ RLL+ G
Sbjct: 34 NVMVVGGAGFVGSNLVKRLLELG 56
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADL 66
++ VTG G +GS + L G H+ LS + +L A +I DL
Sbjct: 4 RLLVTGAAGGVGSAIRPHL---GTLA---------HEVRLSDIVDLGAAEAHEEIVACDL 51
Query: 67 NDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKSGTVKRFVY 126
D ++ + C G+IH+ + + + Q + G + ++ G R V+
Sbjct: 52 ADAQAVHDLVKDCDGIIHLGG---VSVERPWNDILQANIIGAYNLYEAARNLGK-PRIVF 107
Query: 127 TSSGSTVYF 135
SS T+ +
Sbjct: 108 ASSNHTIGY 116
>pdb|2RCD|A Chain A, Crystal Structure Of A Protein With Unknown Function From
Duf3225 Family (Eca3500) From Pectobacterium
Atrosepticum Scri1043 At 2.32 A Resolution
pdb|2RCD|B Chain B, Crystal Structure Of A Protein With Unknown Function From
Duf3225 Family (Eca3500) From Pectobacterium
Atrosepticum Scri1043 At 2.32 A Resolution
pdb|2RCD|C Chain C, Crystal Structure Of A Protein With Unknown Function From
Duf3225 Family (Eca3500) From Pectobacterium
Atrosepticum Scri1043 At 2.32 A Resolution
pdb|2RCD|D Chain D, Crystal Structure Of A Protein With Unknown Function From
Duf3225 Family (Eca3500) From Pectobacterium
Atrosepticum Scri1043 At 2.32 A Resolution
Length = 129
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 135 FSGKDVDMLDETFWSDEDYIR 155
+G DV +LDE FW DE +R
Sbjct: 27 LTGNDVAVLDELFWHDEKTVR 47
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 3 EQKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVR----SDPEHKKDLSFLTNLPGASER 58
++K +V + GGTG+IG ++ + G+ R S+ + + L + L GA
Sbjct: 2 DKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQL-GA--- 57
Query: 59 LQIFNADLNDPESFDAAIAGCAGVIHVAAPIDIDGKETEEVMTQRAVNGTIGILKSCLKS 118
++ A L+D + A+ VI A G + ++ Q + ++++ ++
Sbjct: 58 -KLIEASLDDHQRLVDALKQVDVVISALA----GGVLSHHILEQ------LKLVEAIKEA 106
Query: 119 GTVKRFVYTSSG 130
G +KRF+ + G
Sbjct: 107 GNIKRFLPSEFG 118
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 4 QKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFN 63
Q +V VTG TGF G WL + L G TV+ + L ++ +Q
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMG----ATVKGYSLTAPTVPSLFETARVADGMQSEI 63
Query: 64 ADLNDPESFDAAIAGCAG--VIHVAAPIDIDGKETEEVMTQRA-VNGTIGILKSCLKSGT 120
D+ D +I V H+AA + +E V T V GT+ +L++ G
Sbjct: 64 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 123
Query: 121 VKRFVYTSS 129
VK V +S
Sbjct: 124 VKAVVNITS 132
>pdb|1PNU|A Chain A, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|A Chain A, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 270
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 199 ICPKFAGSVRSTLAMVL--GNREEYSILLNISMVHIDDVARAHIFLLEYPDAKGRYICSS 256
I +F G L ++ R++ + ++ + D A I LL Y D + RYI +
Sbjct: 46 ITSRFIGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAP 105
Query: 257 AKLTI 261
LT+
Sbjct: 106 EGLTV 110
>pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|B Chain B, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|C Chain C, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
pdb|3NYW|D Chain D, Crystal Structure Of A Betaketoacyl-[acp] Reductase
(Fabg) From Bacteroides Thetaiotaomicron
Length = 250
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 1 MEEQKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKK 44
+E+QKG +TG + IG+ + L GY V RS +K
Sbjct: 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEK 46
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 7 KVCVTGGTGFIGSWLIMRLLDHGYFVTTTVR 37
+V V GGTGFIG+ L L G+ VT R
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSR 32
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 2 EEQKGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTV 36
E+ K KV V G TG +G + L DH F T +
Sbjct: 5 EKXKIKVGVLGATGSVGQRFVQLLADHPXFELTAL 39
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 230 VHIDDVARAHIFLLEY-----PDAKGRY-----ICSSAKLTIQEMAEFLSAKHPEYPIP 278
VH+ D+A AHI L+Y P+ K +Y + +S +++E+ E ++ K +PIP
Sbjct: 273 VHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIE-VARKTTGHPIP 330
>pdb|1NKW|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1SM1|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
Length = 275
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 199 ICPKFAGSVRSTLAMVL--GNREEYSILLNISMVHIDDVARAHIFLLEYPDAKGRYICSS 256
I +F G L ++ R++ + ++ + D A I LL Y D + RYI +
Sbjct: 49 ITSRFIGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAP 108
Query: 257 AKLTI 261
LT+
Sbjct: 109 EGLTV 113
>pdb|1NWX|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1XBP|A Chain A, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|A Chain A, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|A Chain A, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|A Chain A, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|A Chain A, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|A Chain A, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|A Chain A, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|A Chain A, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 274
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 199 ICPKFAGSVRSTLAMVL--GNREEYSILLNISMVHIDDVARAHIFLLEYPDAKGRYICSS 256
I +F G L ++ R++ + ++ + D A I LL Y D + RYI +
Sbjct: 48 ITSRFIGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAP 107
Query: 257 AKLTI 261
LT+
Sbjct: 108 EGLTV 112
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 8 VCVTGGTGFIGSWLIMRLL-----DHGYFVTTTVRSDPEHKKDL--SFLTNLPG------ 54
V +TG TGF+G +L++ LL D SD + ++ L +F + P
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 55 --ASERLQIFNADLNDPE 70
A++RL++ D ++P+
Sbjct: 136 ELAADRLEVVAGDKSEPD 153
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 5 KGKVCVTGGTGFIGSWLIMRLLDHGYFVTTTVRSDP-----EHKKDLSFLT--NLPGASE 57
K KV + G TG +G ++ L H Y V + P ++K + ++ ++P +
Sbjct: 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQ 63
Query: 58 RLQIFNADLNDPESFDAAIAGCAG 81
L I + + D + D ++
Sbjct: 64 DLPIVSTNYEDHKDVDVVLSALPN 87
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 5 KGKVCVTGGTGFIGSWLIMRLLDHGYFVT 33
K ++ +TGG GFIG L L+ G VT
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVT 35
>pdb|1RWA|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase
pdb|1RWC|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase
pdb|1RWF|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
pdb|1RWG|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
pdb|1RWH|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
Length = 757
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 118 SGTVKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIR 155
+G R +T SG T YF D+ D+ FW+ +Y R
Sbjct: 410 NGENNRGYHTGSGMT-YFYTSDLGQYDDAFWATANYNR 446
>pdb|1VIM|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|B Chain B, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|C Chain C, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|D Chain D, Crystal Structure Of An Hypothetical Protein
Length = 200
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 12 GGTGFIGSWLIMRLLDHGYFVTTTVRSDPEHKKDLSFLTNLPGASERLQIFNADLNDPE- 70
G +G+I MRL+ GY V + D L + G+ E + N +
Sbjct: 56 GRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDI 115
Query: 71 ---------SFDAAIAGCAGVIHVAAPIDIDGK---ETEEVMTQRAVNGTI 109
D+++A A V+ V + GK E +E+++Q A GT+
Sbjct: 116 GSKLVAVTGKRDSSLAKMADVVMV-----VKGKMKQERDEILSQLAPLGTM 161
>pdb|1RW9|A Chain A, Crystal Structure Of The Arthrobacter Aurescens
Chondroitin Ac Lyase
Length = 757
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 118 SGTVKRFVYTSSGSTVYFSGKDVDMLDETFWSDEDYIR 155
+G R +T SG T YF D+ D+ FW+ +Y R
Sbjct: 410 NGENNRGYHTGSGMT-YFYTSDLGQYDDAFWATANYNR 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,778,264
Number of Sequences: 62578
Number of extensions: 399733
Number of successful extensions: 1145
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 93
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)