BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020338
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/276 (56%), Positives = 184/276 (66%), Gaps = 30/276 (10%)
Query: 61 DSLYYSRLLIRQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHV 120
D LY S I QQ QDM+NR LC TRL EA+ EAEALR EN LR++N L +
Sbjct: 31 DQLYKSTRNI----MQQRQDMVNREALCYTRLHEASLEAEALRLENTELRSMNLRLKNEL 86
Query: 121 SLLIKSSVNEQ------------LSCGNNDAATSFGVVNGMRGLSIAGGGEEVSAESPTS 168
+ LI+SS+ + LS G NDA V N R ++ ++V+ +SPTS
Sbjct: 87 NSLIRSSIQNRFDHRSPLRMLSNLSIGGNDADE---VENQNRTVN----RDDVNDKSPTS 139
Query: 169 VMENVDVKRVSLPKSISVRSNGYLKMGQPAAAAAAAA----ASKTRPRTPAPLRPTQKVY 224
VMEN D+ R SLPKSISVRSNGY K Q AAA + + T+P T + TQKVY
Sbjct: 140 VMENEDLNRSSLPKSISVRSNGYSKASQGGGGAAAQSGKPRGTVTKPGTCGQVSTTQKVY 199
Query: 225 VKGGQQEEEPLELE---VYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHP 281
V+GG ++E+ E VYNQGM KTELCNKWQETG CPYGDHCQFAHGI+ELRPVIRHP
Sbjct: 200 VRGGGKKEDQEEEIEVEVYNQGMTKTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHP 259
Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMG 317
RYKTEVCRMVLAGD CPYGHRCHFRH+L+EQE+ +
Sbjct: 260 RYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVA 295
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/300 (43%), Positives = 170/300 (56%), Gaps = 44/300 (14%)
Query: 27 DENADAFASLYSSLVMAQPETTLSHNPYNDPTIHDSLYYSRLLIRQQQQQQHQDMINRH- 85
+E A +FASLY+S+ + + + + P+ D+ RLL Q + D +N H
Sbjct: 39 EEFAASFASLYNSIFSPESLSPSPPSSSSPPSRVDTTTEHRLL--QAKLILEYDELNEHY 96
Query: 86 NLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSV---------NEQLSCGN 136
LCL RL+ E ++LR ENDSLR N +L K + + SS N Q
Sbjct: 97 ELCLNRLQSLMTELDSLRHENDSLRFENSDLLKLIRISTSSSSSVSPPAPIHNRQFRHQI 156
Query: 137 NDAATSFGVVNGMRGLSIAGGGEEVSAESPTSVMENVDVKRVSLPKSISVRSNGYLKMGQ 196
+D+ ++ + + +R SLPKSISVRS GYLK+
Sbjct: 157 SDSRSA----------------------------KRNNQERNSLPKSISVRSQGYLKINH 188
Query: 197 PAAAAAAAAASKTRPRTPAPLRPTQKVYVKGGQQEEEPLELEVYNQGMFKTELCNKWQET 256
A+ +T + + +QKV V + E E LELEVY QGM KTELCNKWQET
Sbjct: 189 ----GFEASDLQTSQLSSNSVSSSQKVCVVQTKGEREALELEVYRQGMMKTELCNKWQET 244
Query: 257 GACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFM 316
GAC YGD+CQFAHGI+ELRPVIRHPRYKTEVCRM++ G +CPYGHRCHFRH+LT+QER M
Sbjct: 245 GACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHFRHSLTDQERMM 304
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 207 bits (528), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/251 (52%), Positives = 166/251 (66%), Gaps = 29/251 (11%)
Query: 77 QHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLSCGN 136
Q+Q++ +R+ LCL+ L EAA EA ALR EN LR N +L ++LL G
Sbjct: 98 QYQEVADRYELCLSHLAEAAEEAAALRLENAELRVTNSDLALRLALL----------SGK 147
Query: 137 NDAATSFGVVNGMRGLSIAGGGEEVSAESPTSVMENVDVKRVSLPKSISVRSNGYLKMGQ 196
+ AA + V + +R L + G ++V+A + E + V LPKSISVRS YLK+ Q
Sbjct: 148 HTAAVA--VADEIRRLRL--GEQKVAAATKERTPEKLAV----LPKSISVRSTSYLKLNQ 199
Query: 197 PAAAAAAAAASKTR-PRTPA-PLRP--TQKVY---VKGGQQEEEPL----ELEVYNQGMF 245
+ AA A +A+ R PRT + P P +Q+ Y KG +Q+ +P ELEVYNQGMF
Sbjct: 200 QSQAATATSAAPNRKPRTSSNPTNPPNSQRAYDGGKKGDEQKAQPADSGAELEVYNQGMF 259
Query: 246 KTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHF 305
KTELCNKW+ETG CPYGD CQFAHG+ ELRPVIRHPRYKT VCRMVLAGDVCPYGHRCHF
Sbjct: 260 KTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCHF 319
Query: 306 RHALTEQERFM 316
RH+LT ER +
Sbjct: 320 RHSLTPAERLL 330
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 204 bits (520), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 124/264 (46%), Positives = 154/264 (58%), Gaps = 44/264 (16%)
Query: 77 QHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLSCGN 136
Q+Q+M NR LCL+ L +AA EA ALRQEN LR N +L ++
Sbjct: 102 QYQEMANRFELCLSHLADAADEAAALRQENAELRVANNDLACRIAKF------------G 149
Query: 137 NDAATSFGVVNGMRGLSI-----AGGGEEVSAESPTSVMENVDV--KRVSLPKSISVRSN 189
+++ + +R L + P ++M V V K+ LPKSIS+RS
Sbjct: 150 GRQSSAIALAGDLRRLRLPKEQTVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRST 209
Query: 190 GYLKMGQPAAAAAAAAASKTRPRTPAPLRPTQKVYV----------KGGQQEEEP----L 235
GY K+ Q K R P + +Q+V+V K G ++EEP L
Sbjct: 210 GYQKLNQ---------GGKHRVSKPVNVG-SQRVFVGIDGAEGGEHKVGVKKEEPPMGGL 259
Query: 236 ELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGD 295
E EVYNQGMFKTELCNKW+ETGACPYGD CQFAHG+ ELRPVIRHPRYKT+VCRMVLAG
Sbjct: 260 EFEVYNQGMFKTELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGG 319
Query: 296 VCPYGHRCHFRHALTEQERF-MGH 318
VCPYGHRCHFRH++T +RF GH
Sbjct: 320 VCPYGHRCHFRHSITPADRFSFGH 343
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 97/170 (57%), Gaps = 25/170 (14%)
Query: 159 EEVSAESPTSVMENVDVKRVSLPKSISVRSNGYLKMGQPAAAAAAAAASKTRPRTPAPLR 218
++ SA +P + E+ + + PKSIS+RS GYL P A + R R +
Sbjct: 281 KQASAMAPPKLEED-EAAQGGAPKSISIRSPGYLSQKPPQGQARP---QRLRVRASQAME 336
Query: 219 ---PTQKVYVKG-----------GQQEEEP------LELEVYNQGMFKTELCNKWQETGA 258
P ++V G G +E+E +E+E Y QG KTELCNKW E GA
Sbjct: 337 ISHPNCLIFVMGNQCSPKEAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKW-ERGA 395
Query: 259 CPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHA 308
CPYG C+FAHG++ELRPVIRHPRYKT C+M A CPYGHRCHFRH+
Sbjct: 396 CPYGARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRHS 445
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 217 LRPTQKVYVKGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRP 276
L PTQK GG Q N +KTELC ++E GAC YGD CQFAHGI ELR
Sbjct: 98 LLPTQKQ--PGGGQ---------VNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146
Query: 277 VIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMG 317
+ RHP+YKTE+CR CPYG RCHF H E+ G
Sbjct: 147 LTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAG 187
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 267 FAHGIEELRPVIRHP--------RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGH 318
F+ G E L P + P RYKTE+CR C YG +C F H + E H
Sbjct: 91 FSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 150
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 221 QKVYVKGGQQ----EEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRP 276
+ + +GG++ +++P +V N +KTELC ++E GAC YGD CQFAHGI ELR
Sbjct: 88 DRSFSEGGERLLPTQKQPGSGQV-NSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146
Query: 277 VIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMG 317
+ RHP+YKTE+CR CPYG RCHF H E+ G
Sbjct: 147 LTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAG 187
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 267 FAHGIEELRPVIRHP--------RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGH 318
F+ G E L P + P RYKTE+CR C YG +C F H + E H
Sbjct: 91 FSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 150
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 221 QKVYVKGGQQ----EEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRP 276
+ + +GG++ +++P +V N +KTELC ++E GAC YGD CQFAHGI ELR
Sbjct: 88 DRSFSEGGERLLPTQKQPGSGQV-NSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS 146
Query: 277 VIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMG 317
+ RHP+YKTE+CR CPYG RCHF H E+ G
Sbjct: 147 LTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAG 187
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 267 FAHGIEELRPVIRHP--------RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGH 318
F+ G E L P + P RYKTE+CR C YG +C F H + E H
Sbjct: 91 FSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 150
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 51/77 (66%)
Query: 241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYG 300
N +KTELC ++E+GAC YG+ CQFAHG ELR + RHP+YKTE+CR CPYG
Sbjct: 128 NSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYG 187
Query: 301 HRCHFRHALTEQERFMG 317
RCHF H E+ + G
Sbjct: 188 PRCHFIHNAEERRQAPG 204
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGH 318
RYKTE+CR C YG +C F H E H
Sbjct: 131 RYKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRH 167
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%)
Query: 241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYG 300
N +KTELC ++E GAC YG+ CQFAHG ELR + RHP+YKTE+CR CPYG
Sbjct: 130 NSTRYKTELCRPFEENGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYG 189
Query: 301 HRCHFRHALTEQERFMG 317
RCHF H E+ + G
Sbjct: 190 PRCHFIHNAEERRQAPG 206
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGH 318
RYKTE+CR C YG +C F H E H
Sbjct: 133 RYKTELCRPFEENGACKYGEKCQFAHGFHELRSLTRH 169
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYG 300
N +KTELC ++E+GAC YG+ CQFAHG ELR + RHP+YKTE+CR CPYG
Sbjct: 98 NSTRYKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYG 157
Query: 301 HRCHFRHALTEQERFMG 317
RCH H E+ + G
Sbjct: 158 PRCHLIHNAEERRQAPG 174
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGH 318
RYKTE+CR C YG +C F H E H
Sbjct: 101 RYKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRH 137
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%)
Query: 241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYG 300
N +KTELC ++E+G C YG+ CQFAHG ELR + RHP+YKTE+CR CPYG
Sbjct: 150 NSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYG 209
Query: 301 HRCHFRHALTEQ 312
RCHF H E+
Sbjct: 210 PRCHFIHNADER 221
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPV 277
+KTELC + G CPYG C F H +E RP
Sbjct: 192 YKTELCRTFHTIGFCPYGPRCHFIHNADERRPA 224
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGH 318
RYKTE+CR C YG +C F H E H
Sbjct: 153 RYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRH 189
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 48/72 (66%)
Query: 241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYG 300
N +KTELC ++E+G C YG+ CQFAHG ELR + RHP+YKTE+CR CPYG
Sbjct: 123 NSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYG 182
Query: 301 HRCHFRHALTEQ 312
RCHF H E+
Sbjct: 183 PRCHFIHNADER 194
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELR 275
+KTELC + G CPYG C F H +E R
Sbjct: 165 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 195
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 231 EEEPLELE-VYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCR 289
+ EPL + N +KTELC ++E G C YG+ CQFAHG ELR V RHP+YKTE CR
Sbjct: 121 QSEPLPPQQPMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCR 180
Query: 290 MVLAGDVCPYGHRCHFRHALTE 311
+ CPYG RCHF H E
Sbjct: 181 TFHSVGFCPYGPRCHFVHNADE 202
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 46/74 (62%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCH 304
+KTELC + E+G C YG CQFAHG+ ELR RHP+YKTE+C CPYG RCH
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQASRHPKYKTELCHKFYLQGRCPYGSRCH 161
Query: 305 FRHALTEQERFMGH 318
F H +E GH
Sbjct: 162 FIHNPSEDLAAPGH 175
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHP 281
+KTELC+K+ G CPYG C F H E HP
Sbjct: 140 YKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHP 176
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311
RYKTE+CR C YG +C F H L E
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGE 130
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 45/73 (61%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCH 304
+KTELC + E+G C YG CQFAHG+ ELR RHP+YKTE+C CPYG RCH
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCH 155
Query: 305 FRHALTEQERFMG 317
F H TE G
Sbjct: 156 FIHNPTEDLALPG 168
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%)
Query: 242 QGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGH 301
+ ++KTE C WQ +G C YG CQFAHG +EL+ RHP+YK+E CR + CPYG
Sbjct: 324 RALYKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGL 383
Query: 302 RCHFRH 307
RC F H
Sbjct: 384 RCCFLH 389
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 46/74 (62%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCH 304
+KTELC + E+G C YG CQFAHG+ ELR RHP+YKTE+C CPYG RCH
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQPSRHPKYKTELCHKFYLQGRCPYGSRCH 161
Query: 305 FRHALTEQERFMGH 318
F H +E GH
Sbjct: 162 FIHNPSEDLAAPGH 175
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHR 302
+KTELC+K+ G CPYG C F H E HP V R ++ P G R
Sbjct: 140 YKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHP----HVLRQSISFSGLPSGRR 193
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311
RYKTE+CR C YG +C F H L E
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGE 130
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 46/74 (62%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCH 304
+KTELC + E+G C YG CQFAHG+ ELR RHP+YKTE+C CPYG RCH
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCH 163
Query: 305 FRHALTEQERFMGH 318
F H +E GH
Sbjct: 164 FIHNPSEDLAAPGH 177
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 44/73 (60%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCH 304
+KTELC + E+G C YG CQFAHG ELR RHP+YKTE+C CPYG RCH
Sbjct: 97 YKTELCRTYSESGRCRYGAKCQFAHGPGELRQANRHPKYKTELCHKFYLQGRCPYGSRCH 156
Query: 305 FRHALTEQERFMG 317
F H TE G
Sbjct: 157 FIHNPTEDLALPG 169
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 282 RYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311
RYKTE+CR C YG +C F H E
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAHGPGE 125
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 234 PLEL-EVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVL 292
PL+L ++ N+ ++KTELC + G C YG+ CQFAHG+ EL+ + Y+T+ C
Sbjct: 193 PLQLPQLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNELKFKKKSNNYRTKPCINWS 252
Query: 293 AGDVCPYGHRCHFRHA 308
CPYG RC F+H
Sbjct: 253 KLGYCPYGKRCCFKHG 268
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 170 MENVDVKRVSLPKSISVRSNGYLKMGQPAAAAAAAAASKTRPRTPAPLRPTQKVYVKGG- 228
+ VD + LP ++ ++ L+ + A +KT +T T K Y K G
Sbjct: 164 LSQVDSQSTGLPYTLPIQKTTKLEPCRRAPLQLPQLVNKTLYKTELCESFTIKGYCKYGN 223
Query: 229 --QQEEEPLELEVYNQGM-FKTELCNKWQETGACPYGDHCQFAHG 270
Q EL+ + ++T+ C W + G CPYG C F HG
Sbjct: 224 KCQFAHGLNELKFKKKSNNYRTKPCINWSKLGYCPYGKRCCFKHG 268
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 273 ELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311
+L ++ YKTE+C C YG++C F H L E
Sbjct: 195 QLPQLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNE 233
>sp|A3BUD2|C3H57_ORYSJ Putative zinc finger CCCH domain-containing protein 57 OS=Oryza
sativa subsp. japonica GN=Os08g0491700 PE=4 SV=1
Length = 605
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 219 PTQK--VYVKGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRP 276
P++K + KG Q+ EP KT +C W TG C GD C++AH +ELR
Sbjct: 503 PSEKGAIQAKGKQKMREP-----------KTVMCPDWCRTGHCSSGDGCEYAHSQDELRV 551
Query: 277 VIRHPRYKTEVCRMVLAGDVCPYGHRCHFR 306
+ P+Y+TE CR LAG C YG +C ++
Sbjct: 552 IDARPKYRTEPCRYWLAGKGCWYGDKCRYK 581
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRC 303
++KTELC + G+CPYG CQFAHG+ EL+ ++T+ C CPYG RC
Sbjct: 169 LYKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKNFRTKPCVNWEKLGYCPYGRRC 228
Query: 304 HFRHA 308
F+H
Sbjct: 229 CFKHG 233
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 283 YKTEVCRMVLAGDVCPYGHRCHFRHALTE 311
YKTE+C CPYG +C F H L E
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGE 198
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 245 FKTELC-NKWQETGACPYGDHCQFAHGIEELRPV---IRHP--RYKTEVCRMVLAG--DV 296
FKT LC C G C+FAHG++ELR R+P +YKT++C+ G V
Sbjct: 274 FKTRLCMTHAAGINPCALGARCKFAHGLKELRASDIPTRYPNNKYKTKLCKNFARGGSGV 333
Query: 297 CPYGHRCHFRH 307
CPYG RC F H
Sbjct: 334 CPYGLRCEFVH 344
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEEL 274
+KT +CNKWQ TG CP+G HC FAHG EL
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 36/113 (31%)
Query: 242 QGMFKTELCNKWQETGACPY-GDHCQFAHGIEELR------------------------- 275
+ FKT+LC K++ G CPY C FAH EELR
Sbjct: 69 KSFFKTKLCFKFR-AGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAV 127
Query: 276 ---------PVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHL 319
++ P +KT +C CP+G CHF H +E F G L
Sbjct: 128 SLGPRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGL 180
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 245 FKTELCNKWQETG--ACPYGDHCQFAHGIEELRPV---IRHP--RYKTEVCRMVLAGDV- 296
+KT LC +G C G C+FAHG++ELR R+P +YKT++C+ G
Sbjct: 271 YKTRLC-MMHASGIKPCDMGARCKFAHGLKELRATDAPARYPNNKYKTKLCKNFARGGTG 329
Query: 297 -CPYGHRCHFRH 307
CPYG RC F H
Sbjct: 330 FCPYGLRCEFVH 341
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 281 PRYKTEVCRMVLAG-DVCPYGHRCHFRHALTE 311
P YKT +C M +G C G RC F H L E
Sbjct: 269 PNYKTRLCMMHASGIKPCDMGARCKFAHGLKE 300
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCH 304
+KT+LC + G C + +C+FAHG EL K E C +G CP G C
Sbjct: 440 YKTKLCKTFTSGGLCLFAANCRFAHGEVELG--------KKEPCWYFFSGQTCPRGDTCG 491
Query: 305 FRHA 308
FRH+
Sbjct: 492 FRHS 495
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 37/199 (18%)
Query: 162 SAESPTSVMENVDVKRVSLPKSISVRSNGYLKMGQPAAAAAAAAASKTR------PRTPA 215
SA P S + R S P S S + + + A A+ + R P P
Sbjct: 289 SAPPPCSAASRAWLVRCSSPLSDSEWTRRSILAREAAHTPASTVTGRGRFEFVPIPGAPY 348
Query: 216 PLRPTQKVYVKGGQQEEEPLELEVYNQGMFKTELCNKWQETG-ACPYGDHCQFAHGIEEL 274
P+ G PL+ + KT+LC ++ G CP G+ C++AHG ++L
Sbjct: 349 APPPSFAPIAAGAGPAARPLQQLAFGLEEHKTKLCAEYYSRGLGCPRGNTCKYAHGEDDL 408
Query: 275 RPVIR-----------------------HPRYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311
R V+ +YKT++C+ +G +C + C F H E
Sbjct: 409 RLVVAVSSLADAGEGSSSSDSSFAALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGEVE 468
Query: 312 QER-------FMGHLNPRS 323
+ F G PR
Sbjct: 469 LGKKEPCWYFFSGQTCPRG 487
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEEL 274
+KT +CNKW+ TG CP+G C FAHG EL
Sbjct: 246 WKTRICNKWEMTGYCPFGSKCHFAHGAAEL 275
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELR 275
FKT+LC K++ G CPY +C FAHG+EELR
Sbjct: 87 FFKTKLCCKFR-AGTCPYVTNCNFAHGMEELR 117
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 38/113 (33%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEE---------LRPVI----------------- 278
+K C K+ CPYGD C F H + L P +
Sbjct: 170 YKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAA 229
Query: 279 ------------RHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHL 319
+ +KT +C CP+G +CHF H E ++ G L
Sbjct: 230 SASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGL 282
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 237 LEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEEL 274
+++ +KT +CNKW+ TG CP+G C FAHG EL
Sbjct: 253 IQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 45/115 (39%)
Query: 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELR--------------------------PV 277
FKT+LC K++ G CPY +C FAH +EELR V
Sbjct: 91 FFKTKLCCKFR-AGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSV 149
Query: 278 IRHPR------------------YKTEVCRMVLAGDVCPYGHRCHFRHALTEQER 314
+ PR +K C+ + CPYG C F H + R
Sbjct: 150 VEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNR 204
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 277 VIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHL 319
+++ +KT +C CP+G +CHF H E RF G L
Sbjct: 255 ILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGL 297
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 43/106 (40%)
Query: 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELR---------------------------- 275
+KT +C K++ G C G+ C FAHGIE+LR
Sbjct: 104 FYKTRMCAKFR-AGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERE 162
Query: 276 -------PVIRHPR-------YKTEVCRMVLAGDVCPYGHRCHFRH 307
PV+ + + ++CR G+ CPYG RC+F H
Sbjct: 163 RERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIH 208
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEEL 274
+KT LC K+ TG CP+GD C FAHG EL
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 48/124 (38%)
Query: 244 MFKTELCNKWQETGACPYGDHCQFAH-GIEELRP-------------------------- 276
+ + +LC K+ CPYGD C F H + + R
Sbjct: 183 ILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTAS 242
Query: 277 ---------------------VIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERF 315
V++ +KT +C CP+G +CHF H E
Sbjct: 243 NLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNS 302
Query: 316 MGHL 319
+G +
Sbjct: 303 VGRV 306
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELR 275
+KT LC+ ++ G CPY D+C +AHG +ELR
Sbjct: 99 YKTRLCDAFRREGYCPYNDNCTYAHGQDELR 129
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 252 KWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHAL 309
K+ G C G++C F+H +E RP +C+ L G+ C +G +C HAL
Sbjct: 48 KFFRNGTCTAGENCPFSHSLETERP----------ICKYFLKGN-CKFGPKCALSHAL 94
>sp|A7TQ73|DUS3_VANPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DUS3 PE=3
SV=1
Length = 664
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 259 CPYGDHCQFAHGIEEL----RPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQER 314
C +GD C+F H I+E +P I ++K +C + A CP G +C F + ++E
Sbjct: 109 CQFGDKCRFVHDIKEYLSHKKPEIELDQFK--ICPVFDALGFCPMGFKCRFMSSHFDKEN 166
Query: 315 F 315
F
Sbjct: 167 F 167
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 250 CNKWQETGACPYGDHCQFAHGIEE--------LRPVIRHPRYKTEVCRMVLAGDVCPYGH 301
C + TG C YGD C+++H E L P++ R C A C +G
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGA 326
Query: 302 RCHFRHAL 309
C F H++
Sbjct: 327 NCKFDHSM 334
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 255 ETGACPYGDHCQFAHGIEE------LRPVIRHP-RYKTEVCRMVLAGDVCPYGHRCHFRH 307
ETGAC YG C++ H + L V+ P R + C + +C +G C F H
Sbjct: 95 ETGACKYGPTCKYHHPKDRNGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHH 154
Query: 308 ALTEQERFMGH 318
+ GH
Sbjct: 155 PHPHSQPSNGH 165
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 250 CNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGD----VCPYGHRCHF 305
C + TG C YG+ C++ H + L I + Y+ ++ V D C YG C +
Sbjct: 50 CQFFLRTGQCGYGNSCRYNHPLTNLPQGIIY--YRDQLPERVGQPDCETGACKYGPTCKY 107
Query: 306 RH 307
H
Sbjct: 108 HH 109
>sp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis
thaliana GN=At1g03790 PE=2 SV=1
Length = 393
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEE--LRPVIRHPRYKTEVCR 289
+ E+C +++ G C GD C+FAHG+ E L P+ RY+TE C+
Sbjct: 123 YSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPI----RYRTEACK 165
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELR 275
+KT++C+++ + G C YGD C FAHG ELR
Sbjct: 206 YKTKICDRYSK-GNCTYGDRCHFAHGESELR 235
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 236 ELEVYNQGMF-KTELCNKWQETGACPYGDHCQFAH 269
E+E + G+ K++ C K+ T CP+GD+C F H
Sbjct: 27 EMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 280 HP--RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQER 314
HP YKT++C G+ C YG RCHF H +E R
Sbjct: 201 HPGSNYKTKICDRYSKGN-CTYGDRCHFAHGESELRR 236
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELR 275
FKT+LC + + G+C +GD C FAHG ELR
Sbjct: 260 FKTKLCENFNK-GSCTFGDRCHFAHGESELR 289
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 246 KTELCNKWQETGACPYGDHCQFAHGIEEL-RPVI 278
KT +CNK+ C +G C FAHG EL +P++
Sbjct: 100 KTRMCNKYNTAEGCKWGSKCHFAHGERELGKPML 133
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELR 275
FKT+LC + + G+C +GD C FAHG ELR
Sbjct: 266 FKTKLCENFTK-GSCTFGDRCHFAHGENELR 295
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 246 KTELCNKWQETGACPYGDHCQFAHGIEEL-RPVI 278
KT LCNK+ C +GD C FAHG EL +P++
Sbjct: 101 KTRLCNKYNTAEGCKWGDKCHFAHGERELGKPML 134
>sp|Q5VR07|C3H1_ORYSJ Zinc finger CCCH domain-containing protein 1 OS=Oryza sativa subsp.
japonica GN=Os01g0174600 PE=2 SV=1
Length = 279
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 227 GGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVI 278
GG E P +L +KT +C + +G C + D C FAHG EELRP +
Sbjct: 45 GGFAYEPPEKL------FYKTRVCETFVTSGRCMFEDGCTFAHGDEELRPSL 90
>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa
subsp. japonica GN=Os07g0568300 PE=2 SV=1
Length = 657
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 250 CNKWQETGACPYGDHCQFAHGIEELRPVIRHP-RYKTEVCR--MVLAGDVCPYGH-RCHF 305
C ++ G CP GD C+F+HG+ E HP +Y+T +C+ A +C + H
Sbjct: 280 CPNFRRPGGCPSGDSCEFSHGVFE---SWLHPSQYRTRLCKEGAACARRICFFAHDEDEL 336
Query: 306 RHALTEQERFMGHLNPRS 323
RH G L+PR+
Sbjct: 337 RH--VPHNSGAGLLSPRA 352
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELR 275
FKT++C ++ + G C +GD C FAHG ELR
Sbjct: 214 FKTKICERFSK-GNCTFGDRCHFAHGEAELR 243
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 227 GGQQEEEPLELEVYNQGMF-KTELCNKWQETGACPYGDHCQFAH 269
GG ++ E+E Y+ G+ K++ C K+ T CP+G++C F H
Sbjct: 18 GGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLH 61
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 280 HP--RYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311
HP +KT++C G+ C +G RCHF H E
Sbjct: 209 HPGSNFKTKICERFSKGN-CTFGDRCHFAHGEAE 241
>sp|Q93ZS9|C3H47_ARATH Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis
thaliana GN=At3g55980 PE=2 SV=1
Length = 580
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 257 GACPYGDHCQFAHGIEELRPVIRHP-RYKTEVCR--MVLAGDVCPYGHR 302
G+CP GD C++AHG+ E HP +YKT +C+ A VC + H+
Sbjct: 263 GSCPKGDSCEYAHGVFE---SWLHPAQYKTRLCKDETGCARKVCFFAHK 308
>sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa
subsp. japonica GN=Os09g0364000 PE=2 SV=1
Length = 613
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 249 LCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHA 308
LC K+ +G+CP G C + H EE R Y VC L C G C F H+
Sbjct: 323 LCFKFTSSGSCPRGSKCNYRHD-EEAR-----EHYNRNVCFDFLNKGKCEKGPECRFAHS 376
Query: 309 LTEQ 312
L+++
Sbjct: 377 LSDE 380
>sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24
PE=3 SV=1
Length = 339
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELR 275
F ++C W++TG C +GD C+F H E+ +
Sbjct: 171 FAPDVCKDWKQTGFCGFGDSCKFLHAREDYK 201
>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis
thaliana GN=At2g40140 PE=2 SV=1
Length = 597
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 257 GACPYGDHCQFAHGIEELRPVIRHP-RYKTEVCR--MVLAGDVCPYGHR 302
G+CP GD C++AHG+ E HP +Y+T +C+ A VC + HR
Sbjct: 266 GSCPKGDSCEYAHGVFE---SWLHPAQYRTRLCKDETGCARRVCFFAHR 311
>sp|Q6FJ14|DUS3_CANGA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=DUS3 PE=3 SV=1
Length = 640
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 259 CPYGDHCQFAHGI----EELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHF--RHALTEQ 312
C +GD+C+F H I E RP I +KT C + CP G +C F H E
Sbjct: 91 CTFGDNCRFVHDIPTYLEHKRPEITDSVFKT--CPVFETLGYCPMGFKCRFLSSHMDKET 148
Query: 313 ERFMG 317
+ +G
Sbjct: 149 HKLLG 153
>sp|Q9FKW2|C3H61_ARATH Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis
thaliana GN=At5g44260 PE=2 SV=1
Length = 381
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHP-RYKTEVCR 289
+ E+C ++ G C GD C FAHG+ E HP RY+TE C+
Sbjct: 101 YTGEVCPEFSRHGDCSRGDECGFAHGVFE---CWLHPSRYRTEACK 143
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 226 KGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEEL 274
KG Q++ P +KT +C ++ G CP G C FAH EEL
Sbjct: 401 KGADQQQPP------QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 443
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 279 RHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERF 315
+H +YKT +CR + CP G C F H+ E E+F
Sbjct: 410 QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKF 446
>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens
GN=ZC3H4 PE=1 SV=3
Length = 1303
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 33/90 (36%)
Query: 249 LCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAG-----DVCPY---- 299
+C + E G C +GDHC F+H IE + K E+C+ + G + CPY
Sbjct: 395 ICKYFVE-GRCTWGDHCNFSHDIELPK--------KRELCKFYITGFCARAENCPYMHGD 445
Query: 300 --------------GHRCHFRH-ALTEQER 314
G C F H LTE+ R
Sbjct: 446 FPCKLYHTTGNCINGDDCMFSHDPLTEETR 475
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 226 KGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEEL 274
KG Q++ P +KT +C ++ G CP G C FAH EEL
Sbjct: 401 KGADQQQPP------QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 443
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 279 RHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERF 315
+H +YKT +CR + CP G C F H+ E E+F
Sbjct: 410 QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKF 446
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,984,340
Number of Sequences: 539616
Number of extensions: 4912537
Number of successful extensions: 22534
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 21918
Number of HSP's gapped (non-prelim): 635
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)