Query 020338
Match_columns 327
No_of_seqs 149 out of 1168
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.5 1E-14 2.3E-19 138.4 3.9 74 241-314 126-206 (332)
2 KOG1595 CCCH-type Zn-finger pr 99.2 1.4E-11 3E-16 125.6 4.3 90 215-316 208-298 (528)
3 COG5063 CTH1 CCCH-type Zn-fing 98.8 1.5E-09 3.3E-14 105.1 3.3 73 240-312 221-301 (351)
4 COG5063 CTH1 CCCH-type Zn-fing 98.6 1.7E-08 3.7E-13 97.9 3.6 76 241-316 268-345 (351)
5 PF00642 zf-CCCH: Zinc finger 98.4 4.2E-08 9.2E-13 63.3 0.2 26 245-270 1-26 (27)
6 KOG2333 Uncharacterized conser 98.4 1.4E-07 2.9E-12 96.6 1.5 64 246-311 75-140 (614)
7 KOG1595 CCCH-type Zn-finger pr 98.2 7E-07 1.5E-11 91.7 3.8 73 243-325 197-270 (528)
8 KOG1040 Polyadenylation factor 98.2 5E-07 1.1E-11 88.5 2.5 57 243-309 73-129 (325)
9 PF00642 zf-CCCH: Zinc finger 98.2 2.4E-07 5.1E-12 59.8 -0.3 27 283-309 1-27 (27)
10 KOG1677 CCCH-type Zn-finger pr 98.2 2.1E-06 4.5E-11 82.0 4.9 44 238-281 168-211 (332)
11 smart00356 ZnF_C3H1 zinc finge 98.0 3.8E-06 8.2E-11 52.6 2.2 25 245-270 2-26 (27)
12 KOG2494 C3H1-type Zn-finger pr 97.7 1E-05 2.3E-10 79.2 1.6 67 241-314 31-98 (331)
13 KOG1763 Uncharacterized conser 97.7 4.6E-06 1E-10 81.0 -0.9 67 244-311 89-192 (343)
14 smart00356 ZnF_C3H1 zinc finge 97.7 2.8E-05 6E-10 48.7 2.3 26 283-309 2-27 (27)
15 COG5252 Uncharacterized conser 97.0 8.8E-05 1.9E-09 70.6 -1.6 67 244-311 82-177 (299)
16 COG5084 YTH1 Cleavage and poly 96.8 0.0012 2.6E-08 64.1 4.0 31 244-275 101-131 (285)
17 KOG1492 C3H1-type Zn-finger pr 96.5 0.0011 2.4E-08 63.3 1.8 60 238-310 225-284 (377)
18 KOG1492 C3H1-type Zn-finger pr 96.4 0.0018 3.9E-08 61.9 2.4 55 245-310 259-313 (377)
19 KOG1040 Polyadenylation factor 96.0 0.0034 7.4E-08 62.0 2.0 71 243-314 101-187 (325)
20 KOG2185 Predicted RNA-processi 95.9 0.0045 9.7E-08 62.9 2.6 25 285-310 140-164 (486)
21 KOG2185 Predicted RNA-processi 95.0 0.01 2.2E-07 60.4 1.3 37 235-272 128-164 (486)
22 PF14608 zf-CCCH_2: Zinc finge 94.5 0.024 5.1E-07 34.1 1.6 18 249-269 1-18 (19)
23 COG5152 Uncharacterized conser 94.1 0.018 4E-07 54.1 0.7 30 245-274 139-168 (259)
24 COG5084 YTH1 Cleavage and poly 93.5 0.12 2.5E-06 50.6 5.1 56 246-310 133-190 (285)
25 PF14608 zf-CCCH_2: Zinc finge 93.3 0.057 1.2E-06 32.5 1.7 19 287-308 1-19 (19)
26 COG5152 Uncharacterized conser 93.3 0.032 7E-07 52.5 0.8 28 284-311 140-167 (259)
27 KOG4791 Uncharacterized conser 92.7 0.03 6.5E-07 58.3 -0.2 30 285-315 61-90 (667)
28 KOG4791 Uncharacterized conser 89.8 0.19 4.1E-06 52.6 2.1 55 248-313 4-58 (667)
29 PF07407 Seadorna_VP6: Seadorn 89.6 0.25 5.4E-06 49.6 2.6 29 95-123 30-58 (420)
30 KOG1813 Predicted E3 ubiquitin 88.1 0.16 3.5E-06 50.0 0.2 31 245-275 184-214 (313)
31 KOG2494 C3H1-type Zn-finger pr 88.1 0.17 3.7E-06 50.3 0.4 25 285-310 37-62 (331)
32 PF14775 NYD-SP28_assoc: Sperm 87.1 0.99 2.1E-05 34.5 4.0 32 80-111 23-54 (60)
33 KOG1813 Predicted E3 ubiquitin 87.0 0.19 4.1E-06 49.5 0.0 30 283-312 184-213 (313)
34 KOG1763 Uncharacterized conser 86.6 0.22 4.7E-06 49.3 0.2 31 284-315 91-121 (343)
35 KOG4343 bZIP transcription fac 83.6 3.7 7.9E-05 43.8 7.4 50 76-125 281-337 (655)
36 PRK00888 ftsB cell division pr 82.5 2.2 4.8E-05 35.7 4.4 35 90-124 27-61 (105)
37 COG4026 Uncharacterized protei 82.3 3 6.5E-05 40.3 5.7 49 75-123 127-175 (290)
38 KOG1039 Predicted E3 ubiquitin 82.1 0.53 1.1E-05 47.1 0.6 24 248-272 9-32 (344)
39 PF10224 DUF2205: Predicted co 82.1 9 0.0002 31.1 7.6 48 78-125 18-65 (80)
40 KOG2202 U2 snRNP splicing fact 81.7 0.58 1.3E-05 45.3 0.8 26 284-310 151-176 (260)
41 COG5252 Uncharacterized conser 79.7 0.6 1.3E-05 45.1 0.1 34 283-317 83-116 (299)
42 PRK13169 DNA replication intia 79.1 7.6 0.00016 33.2 6.5 35 89-123 21-55 (110)
43 PF10650 zf-C3H1: Putative zin 78.4 1.3 2.9E-05 28.3 1.4 20 287-307 2-21 (23)
44 PF10205 KLRAQ: Predicted coil 75.9 11 0.00023 32.1 6.4 37 90-126 33-69 (102)
45 PF06156 DUF972: Protein of un 75.3 14 0.00031 31.2 7.2 35 90-124 22-56 (107)
46 KOG3702 Nuclear polyadenylated 71.9 4.6 9.9E-05 43.8 4.1 14 296-309 652-665 (681)
47 TIGR00219 mreC rod shape-deter 71.2 13 0.00028 36.0 6.7 26 96-121 65-90 (283)
48 PF04977 DivIC: Septum formati 69.8 9.2 0.0002 28.9 4.4 34 90-123 17-50 (80)
49 PF07558 Shugoshin_N: Shugoshi 68.5 3.6 7.7E-05 29.9 1.8 41 74-114 5-45 (46)
50 KOG3650 Predicted coiled-coil 66.4 34 0.00074 29.4 7.4 70 41-123 26-103 (120)
51 PF00170 bZIP_1: bZIP transcri 64.1 30 0.00066 25.8 6.2 20 101-120 37-56 (64)
52 PRK13922 rod shape-determining 63.9 29 0.00063 32.7 7.4 49 75-123 47-95 (276)
53 PF04859 DUF641: Plant protein 62.2 18 0.00038 31.9 5.2 47 74-120 81-131 (131)
54 PF10650 zf-C3H1: Putative zin 61.7 5.3 0.00012 25.6 1.4 21 248-269 1-21 (23)
55 PF06005 DUF904: Protein of un 61.0 17 0.00036 28.8 4.4 24 75-98 10-33 (72)
56 KOG2333 Uncharacterized conser 60.7 3.7 8E-05 43.5 0.8 28 284-311 75-104 (614)
57 PF06005 DUF904: Protein of un 60.6 38 0.00083 26.8 6.4 22 94-115 15-36 (72)
58 PRK09413 IS2 repressor TnpA; R 59.4 15 0.00032 30.8 4.1 32 92-123 73-104 (121)
59 PF04849 HAP1_N: HAP1 N-termin 58.9 18 0.00039 36.0 5.2 35 70-104 269-304 (306)
60 PRK10722 hypothetical protein; 54.0 96 0.0021 30.2 9.0 64 64-133 145-210 (247)
61 PF05103 DivIVA: DivIVA protei 54.0 9.8 0.00021 31.5 2.2 32 92-123 27-58 (131)
62 KOG3702 Nuclear polyadenylated 53.3 19 0.00041 39.3 4.6 45 225-273 519-566 (681)
63 KOG2202 U2 snRNP splicing fact 53.0 6.3 0.00014 38.4 1.0 27 244-271 149-175 (260)
64 PF12709 Kinetocho_Slk19: Cent 52.4 24 0.00052 29.2 4.1 34 90-123 49-86 (87)
65 PRK14127 cell division protein 52.3 46 0.00099 28.5 5.9 28 96-123 43-70 (109)
66 TIGR00219 mreC rod shape-deter 52.0 40 0.00087 32.6 6.3 42 82-123 58-110 (283)
67 smart00338 BRLZ basic region l 51.3 29 0.00062 26.0 4.1 33 91-123 27-59 (65)
68 PRK13922 rod shape-determining 50.3 47 0.001 31.3 6.3 26 89-114 68-93 (276)
69 PRK14127 cell division protein 49.6 23 0.00049 30.3 3.7 33 92-124 32-64 (109)
70 COG4467 Regulator of replicati 49.0 51 0.0011 28.6 5.7 28 95-122 27-54 (114)
71 PF14775 NYD-SP28_assoc: Sperm 48.1 74 0.0016 24.3 5.9 43 79-121 15-57 (60)
72 PF14197 Cep57_CLD_2: Centroso 44.9 1.2E+02 0.0026 23.8 6.8 32 85-116 35-66 (69)
73 PRK10884 SH3 domain-containing 44.8 99 0.0021 28.9 7.4 28 96-123 131-158 (206)
74 COG3074 Uncharacterized protei 43.9 1.3E+02 0.0028 24.5 6.8 51 74-124 23-73 (79)
75 smart00338 BRLZ basic region l 43.7 90 0.002 23.3 5.8 15 96-110 46-60 (65)
76 PF14197 Cep57_CLD_2: Centroso 43.5 70 0.0015 25.1 5.3 29 82-110 39-67 (69)
77 TIGR02209 ftsL_broad cell divi 43.0 40 0.00087 26.0 3.9 33 92-124 26-58 (85)
78 PF07716 bZIP_2: Basic region 42.6 38 0.00083 24.7 3.5 25 93-117 28-52 (54)
79 PF06632 XRCC4: DNA double-str 41.9 80 0.0017 31.8 6.8 44 83-126 130-173 (342)
80 TIGR02449 conserved hypothetic 39.3 1.9E+02 0.0041 22.7 7.3 11 103-113 20-30 (65)
81 COG2919 Septum formation initi 39.1 52 0.0011 27.8 4.3 34 91-124 51-84 (117)
82 PRK13169 DNA replication intia 38.6 85 0.0018 26.9 5.5 29 90-118 15-43 (110)
83 PF06156 DUF972: Protein of un 37.7 89 0.0019 26.5 5.5 44 80-123 5-48 (107)
84 PF11418 Scaffolding_pro: Phi2 36.8 1.3E+02 0.0027 25.4 6.0 43 81-123 31-73 (97)
85 TIGR03752 conj_TIGR03752 integ 35.3 46 0.001 35.1 4.0 30 91-120 74-103 (472)
86 TIGR02894 DNA_bind_RsfA transc 35.3 64 0.0014 29.5 4.5 51 97-154 104-156 (161)
87 COG4467 Regulator of replicati 35.1 35 0.00075 29.6 2.6 27 91-117 16-42 (114)
88 PF00170 bZIP_1: bZIP transcri 34.2 87 0.0019 23.4 4.4 43 71-113 21-63 (64)
89 PF14645 Chibby: Chibby family 33.7 45 0.00098 28.6 3.1 30 95-124 69-98 (116)
90 KOG0153 Predicted RNA-binding 33.3 22 0.00049 36.2 1.4 27 245-272 159-185 (377)
91 PRK10884 SH3 domain-containing 32.3 2E+02 0.0044 26.9 7.4 22 96-117 145-166 (206)
92 KOG4815 Muscular protein impli 32.0 2.8E+02 0.0061 28.5 8.7 19 107-125 333-351 (511)
93 COG4951 Uncharacterized protei 31.6 23 0.0005 35.3 1.1 33 91-133 2-34 (361)
94 KOG4005 Transcription factor X 31.4 69 0.0015 31.4 4.3 35 91-125 98-139 (292)
95 PRK14872 rod shape-determining 29.7 61 0.0013 32.7 3.8 21 98-118 58-78 (337)
96 PF12808 Mto2_bdg: Micro-tubul 29.1 47 0.001 25.0 2.2 19 94-112 26-44 (52)
97 KOG1039 Predicted E3 ubiquitin 28.7 42 0.00092 33.9 2.5 30 284-313 248-278 (344)
98 TIGR02894 DNA_bind_RsfA transc 28.7 1.7E+02 0.0038 26.8 6.1 35 91-125 105-139 (161)
99 KOG3119 Basic region leucine z 28.3 1.5E+02 0.0032 28.6 6.0 32 93-124 218-249 (269)
100 PF13942 Lipoprotein_20: YfhG 28.2 1.8E+02 0.0039 27.1 6.2 50 71-124 107-157 (179)
101 PHA00489 scaffolding protein 27.9 1.4E+02 0.0031 25.3 5.0 42 81-122 32-73 (101)
102 KOG0153 Predicted RNA-binding 27.6 33 0.00071 35.0 1.5 25 285-310 161-185 (377)
103 PF09544 DUF2381: Protein of u 26.9 61 0.0013 31.7 3.1 42 84-125 128-171 (289)
104 PF11559 ADIP: Afadin- and alp 26.6 2.6E+02 0.0056 24.1 6.7 50 75-124 44-93 (151)
105 PF10186 Atg14: UV radiation r 24.2 3.5E+02 0.0077 24.9 7.5 48 74-121 61-108 (302)
106 TIGR02449 conserved hypothetic 23.9 2.6E+02 0.0056 22.0 5.5 28 97-124 28-55 (65)
107 KOG0969 DNA polymerase delta, 23.5 39 0.00086 38.0 1.2 34 12-45 545-581 (1066)
108 PF13600 DUF4140: N-terminal d 23.2 1.3E+02 0.0029 24.1 4.0 33 91-123 71-103 (104)
109 KOG0982 Centrosomal protein Nu 23.2 79 0.0017 33.3 3.2 35 90-124 403-437 (502)
110 PF11382 DUF3186: Protein of u 23.1 76 0.0017 31.1 3.0 27 97-123 39-65 (308)
111 PF02183 HALZ: Homeobox associ 23.0 89 0.0019 22.6 2.6 15 98-112 20-34 (45)
112 PF06472 ABC_membrane_2: ABC t 23.0 1.6E+02 0.0035 27.9 5.1 43 74-116 197-239 (281)
113 PF15058 Speriolin_N: Sperioli 22.8 77 0.0017 30.0 2.8 27 100-126 8-34 (200)
114 TIGR02268 Myxococcus xanthus p 22.1 69 0.0015 31.8 2.5 29 86-114 134-162 (295)
115 KOG4343 bZIP transcription fac 22.0 70 0.0015 34.6 2.7 27 85-111 303-330 (655)
116 PF08098 ATX_III: Anemonia sul 21.7 51 0.0011 21.8 1.0 10 257-266 13-22 (27)
117 PF14916 CCDC92: Coiled-coil d 20.7 57 0.0012 25.3 1.3 27 97-123 21-47 (60)
118 PF10828 DUF2570: Protein of u 20.7 5E+02 0.011 21.6 7.4 69 74-152 40-108 (110)
119 PF04880 NUDE_C: NUDE protein, 20.4 1.5E+02 0.0033 27.1 4.2 29 92-120 19-47 (166)
120 PRK15422 septal ring assembly 20.4 1.9E+02 0.0041 23.8 4.2 34 90-123 11-44 (79)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.50 E-value=1e-14 Score=138.40 Aligned_cols=74 Identities=42% Similarity=0.943 Sum_probs=66.7
Q ss_pred ccCCcccccCcccccCCCCCC-CCCCCccccCcccc------cccccCCccccccccccCccccCCCCCCCCCCCCchhh
Q 020338 241 NQGMFKTELCNKWQETGACPY-GDHCQFAHGIEELR------PVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQE 313 (327)
Q Consensus 241 n~~k~KTkLCr~f~~~G~C~y-GD~C~FAHd~~Elr------~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elr 313 (327)
+...+||.+|.+|...|.|.| |++|+|+|+.++++ ....+++|||++|.+|.+.|.|+||.+|+|.|+..+..
T Consensus 126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred CcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 456899999999999999999 99999999999998 33467899999999999999999999999999987655
Q ss_pred h
Q 020338 314 R 314 (327)
Q Consensus 314 k 314 (327)
.
T Consensus 206 ~ 206 (332)
T KOG1677|consen 206 A 206 (332)
T ss_pred c
Confidence 4
No 2
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.18 E-value=1.4e-11 Score=125.55 Aligned_cols=90 Identities=27% Similarity=0.597 Sum_probs=76.0
Q ss_pred CCCCCCccccccCCcccccchhhhhcccCCcccccCcccccCCCCCCCCCCCccccCcccccccccC-CccccccccccC
Q 020338 215 APLRPTQKVYVKGGQQEEEPLELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHP-RYKTEVCRMVLA 293 (327)
Q Consensus 215 ~~~~~~~~v~~~gg~~~e~~~e~e~~n~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp-~yKTk~Ck~Fl~ 293 (327)
-.-+||.|.|+++|+|+.. ..-..-.|..+.|+.| ++|.|+.||.|.|+|++-|... || .|||+.|+.
T Consensus 208 ~shDwteCPf~HpgEkARR----RDPRkyhYs~tpCPef-rkG~C~rGD~CEyaHgvfEcwL---HPa~YRT~~CkD--- 276 (528)
T KOG1595|consen 208 RSHDWTECPFAHPGEKARR----RDPRKYHYSSTPCPEF-RKGSCERGDSCEYAHGVFECWL---HPARYRTRKCKD--- 276 (528)
T ss_pred cCCCcccCCccCCCccccc----CCcccccccCccCccc-ccCCCCCCCccccccceehhhc---CHHHhccccccC---
Confidence 3458999999999988743 3334456889999999 4899999999999999999775 54 799999999
Q ss_pred ccccCCCCCCCCCCCCchhhhhc
Q 020338 294 GDVCPYGHRCHFRHALTEQERFM 316 (327)
Q Consensus 294 gG~CpyG~rCRFaH~~~Elrkl~ 316 (327)
+|+|+. .-|.|+|...++|.+.
T Consensus 277 g~~C~R-rvCfFAH~~eqLR~l~ 298 (528)
T KOG1595|consen 277 GGYCPR-RVCFFAHSPEQLRPLP 298 (528)
T ss_pred CCCCcc-ceEeeecChHHhcccC
Confidence 479999 8899999999998665
No 3
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.84 E-value=1.5e-09 Score=105.12 Aligned_cols=73 Identities=41% Similarity=0.916 Sum_probs=65.1
Q ss_pred cccCCccc--ccCcccccCCCCCC---CCCCCcc---ccCcccccccccCCccccccccccCccccCCCCCCCCCCCCch
Q 020338 240 YNQGMFKT--ELCNKWQETGACPY---GDHCQFA---HGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311 (327)
Q Consensus 240 ~n~~k~KT--kLCr~f~~~G~C~y---GD~C~FA---Hd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~E 311 (327)
.+...+|+ .+|..|-..|.|++ |+.|+|+ |+..++.+......|+|++|..|...|+|+||.+|.|.|+..+
T Consensus 221 ~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~ 300 (351)
T COG5063 221 QNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300 (351)
T ss_pred ccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChh
Confidence 35567898 99999988999999 9999999 9999988765566799999999999999999999999999865
Q ss_pred h
Q 020338 312 Q 312 (327)
Q Consensus 312 l 312 (327)
.
T Consensus 301 ~ 301 (351)
T COG5063 301 D 301 (351)
T ss_pred h
Confidence 3
No 4
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.64 E-value=1.7e-08 Score=97.93 Aligned_cols=76 Identities=26% Similarity=0.520 Sum_probs=65.3
Q ss_pred ccCCcccccCcccccCCCCCCCCCCCccccCcccccccccC--CccccccccccCccccCCCCCCCCCCCCchhhhhc
Q 020338 241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHP--RYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFM 316 (327)
Q Consensus 241 n~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp--~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrkl~ 316 (327)
..+.|+|++|.+|...|.|+||-+|.|.|+..+...+..++ .|+..+|+-+..+|.|++|-.|.|.|...-+.+-.
T Consensus 268 k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~s~ 345 (351)
T COG5063 268 KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLDFSV 345 (351)
T ss_pred cccccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchhhhhh
Confidence 34579999999999999999999999999988766554566 78899999999999999999999999987665433
No 5
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.44 E-value=4.2e-08 Score=63.29 Aligned_cols=26 Identities=58% Similarity=1.386 Sum_probs=17.7
Q ss_pred cccccCcccccCCCCCCCCCCCcccc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHG 270 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd 270 (327)
+|+++|++|...|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 56778888876778888888888886
No 6
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=98.35 E-value=1.4e-07 Score=96.62 Aligned_cols=64 Identities=28% Similarity=0.672 Sum_probs=53.9
Q ss_pred ccccCcccccC--CCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCch
Q 020338 246 KTELCNKWQET--GACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311 (327)
Q Consensus 246 KTkLCr~f~~~--G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~E 311 (327)
+..||+..... ..|.|||+|+|.||++.+... ++.....-|+.|..+|+|+||.+|||+..+-+
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLat--K~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld 140 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLAT--KAPDIGPSCPVFESLGFCPYGFKCRFLGAHLD 140 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhc--cCcccCCccceeeccccCCccceeehhhcccC
Confidence 68899998744 369999999999999987654 45566788999999999999999999877543
No 7
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.24 E-value=7e-07 Score=91.73 Aligned_cols=73 Identities=27% Similarity=0.477 Sum_probs=59.9
Q ss_pred CCcccccCcccccCCCCCCCCCCCccc-cCcccccccccCCccccccccccCccccCCCCCCCCCCCCchhhhhcCCCCC
Q 020338 243 GMFKTELCNKWQETGACPYGDHCQFAH-GIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMGHLNP 321 (327)
Q Consensus 243 ~k~KTkLCr~f~~~G~C~yGD~C~FAH-d~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrkl~~~l~P 321 (327)
.-||++.|. ++.|.-+-.|.|+| +...-|-..++-.|..++|+.|.+| .|..|+.|.|+|+..|.. |||
T Consensus 197 y~fKir~C~----R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG-~C~rGD~CEyaHgvfEcw-----LHP 266 (528)
T KOG1595|consen 197 YSFKIRRCS----RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKG-SCERGDSCEYAHGVFECW-----LHP 266 (528)
T ss_pred EeeeecccC----CccCCCcccCCccCCCcccccCCcccccccCccCcccccC-CCCCCCccccccceehhh-----cCH
Confidence 348999996 55899999999999 6666554445567889999999995 899999999999987765 888
Q ss_pred CccC
Q 020338 322 RSIK 325 (327)
Q Consensus 322 ~~vk 325 (327)
..+|
T Consensus 267 a~YR 270 (528)
T KOG1595|consen 267 ARYR 270 (528)
T ss_pred HHhc
Confidence 7765
No 8
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.23 E-value=5e-07 Score=88.48 Aligned_cols=57 Identities=28% Similarity=0.679 Sum_probs=43.1
Q ss_pred CCcccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCC
Q 020338 243 GMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHAL 309 (327)
Q Consensus 243 ~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~ 309 (327)
...++++|++|+ .|.|.+||.|.|+|.. ++. +...|.+|...|.|..|..|-|.|..
T Consensus 73 ~~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~~--------k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 73 DSRGKVVCKHWL-RGLCKKGDQCEFLHEY-DLT--------KMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred ccCCceeehhhh-hhhhhccCcCcchhhh-hhc--------ccccccccccccccccccCCcccCCC
Confidence 378899999997 8999999999999987 332 34456666666666666666666665
No 9
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.21 E-value=2.4e-07 Score=59.82 Aligned_cols=27 Identities=41% Similarity=1.131 Sum_probs=21.9
Q ss_pred ccccccccccCccccCCCCCCCCCCCC
Q 020338 283 YKTEVCRMVLAGDVCPYGHRCHFRHAL 309 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~rCRFaH~~ 309 (327)
|++.+|++|...|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 578999999998899999999999973
No 10
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.16 E-value=2.1e-06 Score=81.99 Aligned_cols=44 Identities=50% Similarity=0.916 Sum_probs=37.6
Q ss_pred hhcccCCcccccCcccccCCCCCCCCCCCccccCcccccccccC
Q 020338 238 EVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHP 281 (327)
Q Consensus 238 e~~n~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp 281 (327)
...+..+|||++|.+|..+|.|+||.+|+|+|...+..+...++
T Consensus 168 ~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~~~ 211 (332)
T KOG1677|consen 168 QVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNRHP 211 (332)
T ss_pred hhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccccCC
Confidence 55677899999999999899999999999999998877654433
No 11
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.00 E-value=3.8e-06 Score=52.60 Aligned_cols=25 Identities=60% Similarity=1.358 Sum_probs=17.9
Q ss_pred cccccCcccccCCCCCCCCCCCcccc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHG 270 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd 270 (327)
+|+.+|++| ..|.|++|+.|+|+|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 566677777 5777777777777775
No 12
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.75 E-value=1e-05 Score=79.23 Aligned_cols=67 Identities=21% Similarity=0.507 Sum_probs=53.1
Q ss_pred ccCCcccccCcccccCCCCCCCCC-CCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCchhhh
Q 020338 241 NQGMFKTELCNKWQETGACPYGDH-CQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQER 314 (327)
Q Consensus 241 n~~k~KTkLCr~f~~~G~C~yGD~-C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrk 314 (327)
.+++..-++||.|+ +|.|.+||. |+|+|....... ..-+-..|..|+++ .|.. ++|+|.|+..+++.
T Consensus 31 d~~wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~V----~~g~v~aC~Ds~kg-rCsR-~nCkylHpp~hlkd 98 (331)
T KOG2494|consen 31 DTKWLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQV----SNGRVIACFDSQKG-RCSR-ENCKYLHPPQHLKD 98 (331)
T ss_pred ccchhHHHHHHHHH-hccccCCCccccccCCCCCCCc----cCCeEEEEeccccC-ccCc-ccceecCCChhhhh
Confidence 45567788999997 899999999 999997664432 22345679999997 7998 67999999987653
No 13
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.74 E-value=4.6e-06 Score=81.01 Aligned_cols=67 Identities=36% Similarity=0.774 Sum_probs=49.0
Q ss_pred CcccccCcccccCCCCCCCCCCCccccCccccccc------------------------cc--CCcc-ccccccccC---
Q 020338 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELRPVI------------------------RH--PRYK-TEVCRMVLA--- 293 (327)
Q Consensus 244 k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~------------------------~h--p~yK-Tk~Ck~Fl~--- 293 (327)
--|+.+|-+| ..|.|..|+.|.|+|+...-+... .| ++.. -.+|+||+-
T Consensus 89 DPKSvvCafF-k~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE 167 (343)
T KOG1763|consen 89 DPKSVVCAFF-KQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE 167 (343)
T ss_pred CchHHHHHHH-hccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence 3689999999 489999999999999976533221 01 1111 248999986
Q ss_pred ---cc---ccCCCC-CCCCCCCCch
Q 020338 294 ---GD---VCPYGH-RCHFRHALTE 311 (327)
Q Consensus 294 ---gG---~CpyG~-rCRFaH~~~E 311 (327)
+| .||+|- .|.|.|.+++
T Consensus 168 ~~kYGWfW~CPnGg~~C~YrHaLP~ 192 (343)
T KOG1763|consen 168 NGKYGWFWECPNGGDKCIYRHALPE 192 (343)
T ss_pred cCCccceeECCCCCCeeeeeecCCc
Confidence 23 499976 8999999875
No 14
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.69 E-value=2.8e-05 Score=48.66 Aligned_cols=26 Identities=54% Similarity=1.261 Sum_probs=22.3
Q ss_pred ccccccccccCccccCCCCCCCCCCCC
Q 020338 283 YKTEVCRMVLAGDVCPYGHRCHFRHAL 309 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~rCRFaH~~ 309 (327)
+++.+|++|.. |.|++|++|+|.|..
T Consensus 2 ~k~~~C~~~~~-g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFKR-GYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCccC-CCCCCCCCcCCCCcC
Confidence 57889999955 699999999999973
No 15
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.03 E-value=8.8e-05 Score=70.65 Aligned_cols=67 Identities=36% Similarity=0.769 Sum_probs=50.1
Q ss_pred CcccccCcccccCCCCCCCCCCCccccCccccccccc------------------CCc-cccccccccCc------c---
Q 020338 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRH------------------PRY-KTEVCRMVLAG------D--- 295 (327)
Q Consensus 244 k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~h------------------p~y-KTk~Ck~Fl~g------G--- 295 (327)
--|+++|-.|. .+.|-.|+.|.|+|+.++.+..... |.. ...+|+||... |
T Consensus 82 dpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W 160 (299)
T COG5252 82 DPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGW 160 (299)
T ss_pred CchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcccee
Confidence 47899999995 8999999999999997765433110 111 23689999762 2
Q ss_pred ccCCC-CCCCCCCCCch
Q 020338 296 VCPYG-HRCHFRHALTE 311 (327)
Q Consensus 296 ~CpyG-~rCRFaH~~~E 311 (327)
.||+| .+|.|.|.+++
T Consensus 161 ~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 161 TCPNGNMRCSYIHKLPD 177 (299)
T ss_pred eCCCCCceeeeeeccCc
Confidence 59997 58999999876
No 16
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.79 E-value=0.0012 Score=64.08 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=26.7
Q ss_pred CcccccCcccccCCCCCCCCCCCccccCcccc
Q 020338 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELR 275 (327)
Q Consensus 244 k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr 275 (327)
.+..++|++|. .|.|+.|..|.|+|+.+-..
T Consensus 101 ~~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~ 131 (285)
T COG5084 101 LSSSVVCKFFL-RGLCKSGFSCEFLHEYDLRS 131 (285)
T ss_pred ccCCcccchhc-cccCcCCCccccccCCCccc
Confidence 47889999995 89999999999999877554
No 17
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=96.54 E-value=0.0011 Score=63.27 Aligned_cols=60 Identities=23% Similarity=0.630 Sum_probs=44.2
Q ss_pred hhcccCCcccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCc
Q 020338 238 EVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALT 310 (327)
Q Consensus 238 e~~n~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~ 310 (327)
..++. .....+|++|+ .|+|.+.+.|...|..+..+ -.-|++|+.| .|.. +.|||.|-..
T Consensus 225 rfvhe-ptrkticpkfl-ngrcnkaedcnlsheldprr---------ipacryfllg-kcnn-pncryvhihy 284 (377)
T KOG1492|consen 225 RFVHE-PTRKTICPKFL-NGRCNKAEDCNLSHELDPRR---------IPACRYFLLG-KCNN-PNCRYVHIHY 284 (377)
T ss_pred eeecc-ccccccChHHh-cCccCchhcCCcccccCccc---------cchhhhhhhc-cCCC-CCceEEEEee
Confidence 33343 34556888886 78888888888888766544 3459999996 8985 8999998754
No 18
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=96.42 E-value=0.0018 Score=61.91 Aligned_cols=55 Identities=20% Similarity=0.480 Sum_probs=36.9
Q ss_pred cccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALT 310 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~ 310 (327)
.....|++|+ -|.|. ..+|+|.|-.- .....+|..|...|+|..|..|.-.|-..
T Consensus 259 rripacryfl-lgkcn-npncryvhihy---------senapicfefakygfcelgtscknqhilq 313 (377)
T KOG1492|consen 259 RRIPACRYFL-LGKCN-NPNCRYVHIHY---------SENAPICFEFAKYGFCELGTSCKNQHILQ 313 (377)
T ss_pred cccchhhhhh-hccCC-CCCceEEEEee---------cCCCceeeeehhcceeccccccccceeee
Confidence 4556688775 67776 56788877321 11245688888878888888887777654
No 19
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=96.01 E-value=0.0034 Score=61.95 Aligned_cols=71 Identities=24% Similarity=0.502 Sum_probs=50.1
Q ss_pred CCcccccCcccccCCCCCCCCCCCccccCcccccc---------------cccCCccccccccccCccccCCCCC-CCCC
Q 020338 243 GMFKTELCNKWQETGACPYGDHCQFAHGIEELRPV---------------IRHPRYKTEVCRMVLAGDVCPYGHR-CHFR 306 (327)
Q Consensus 243 ~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~---------------~~hp~yKTk~Ck~Fl~gG~CpyG~r-CRFa 306 (327)
...|...|.+|...|.|..|..|.|.|+..+.... +.+-..+..+|..|..+ .|+-|.. |.+.
T Consensus 101 ~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~~~c~~y~~g-fC~~g~q~c~~~ 179 (325)
T KOG1040|consen 101 DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERKVLCPPYNAG-FCPKGPQRCDML 179 (325)
T ss_pred hhcccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhhcccCCCchhhh-hccCCCCccccc
Confidence 35667789999889999999999999987322111 11122334778888885 7888887 8888
Q ss_pred CCCchhhh
Q 020338 307 HALTEQER 314 (327)
Q Consensus 307 H~~~Elrk 314 (327)
|...++-.
T Consensus 180 hp~~~~~~ 187 (325)
T KOG1040|consen 180 HPEFQQPP 187 (325)
T ss_pred CCCCCCCh
Confidence 88766544
No 20
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.94 E-value=0.0045 Score=62.93 Aligned_cols=25 Identities=36% Similarity=1.008 Sum_probs=22.7
Q ss_pred ccccccccCccccCCCCCCCCCCCCc
Q 020338 285 TEVCRMVLAGDVCPYGHRCHFRHALT 310 (327)
Q Consensus 285 Tk~Ck~Fl~gG~CpyG~rCRFaH~~~ 310 (327)
.++|+||+.+ .|+||..|||.|+..
T Consensus 140 MkpC~ffLeg-~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 140 MKPCKFFLEG-RCRFGENCRFSHGLD 164 (486)
T ss_pred hccchHhhcc-ccccCcccccccCcc
Confidence 5789999997 999999999999964
No 21
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=94.97 E-value=0.01 Score=60.43 Aligned_cols=37 Identities=22% Similarity=0.685 Sum_probs=30.1
Q ss_pred hhhhhcccCCcccccCcccccCCCCCCCCCCCccccCc
Q 020338 235 LELEVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIE 272 (327)
Q Consensus 235 ~e~e~~n~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~ 272 (327)
+.+-..++-....++|+||+ .|.|+||.+|+|+|+..
T Consensus 128 vRVlfl~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 128 VRVLFLTPTHESMKPCKFFL-EGRCRFGENCRFSHGLD 164 (486)
T ss_pred eEEEeecCcchhhccchHhh-ccccccCcccccccCcc
Confidence 44445566667788999997 89999999999999865
No 22
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.54 E-value=0.024 Score=34.14 Aligned_cols=18 Identities=39% Similarity=0.931 Sum_probs=12.2
Q ss_pred cCcccccCCCCCCCCCCCccc
Q 020338 249 LCNKWQETGACPYGDHCQFAH 269 (327)
Q Consensus 249 LCr~f~~~G~C~yGD~C~FAH 269 (327)
+|++|. .|++|++|.|.|
T Consensus 1 ~Ck~~~---~C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSH 18 (19)
T ss_pred CCcCcC---CCCCCCcCccCC
Confidence 366664 377777777777
No 23
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.08 E-value=0.018 Score=54.11 Aligned_cols=30 Identities=37% Similarity=0.988 Sum_probs=26.9
Q ss_pred cccccCcccccCCCCCCCCCCCccccCccc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHGIEEL 274 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd~~El 274 (327)
+...+|+.|..+|.|-|||.|.|+|+.+++
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhhhhhh
Confidence 567889999889999999999999998854
No 24
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=93.54 E-value=0.12 Score=50.56 Aligned_cols=56 Identities=27% Similarity=0.632 Sum_probs=46.6
Q ss_pred ccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccC--ccccCCCCCCCCCCCCc
Q 020338 246 KTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLA--GDVCPYGHRCHFRHALT 310 (327)
Q Consensus 246 KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~--gG~CpyG~rCRFaH~~~ 310 (327)
..-.|++|-..|.|..|..|.+.|.. |......|.+|.. .+.|++|..|+|.|...
T Consensus 133 ~~~~c~~Fs~~G~cs~g~~c~~~h~d---------p~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~ 190 (285)
T COG5084 133 QGPPCRSFSLKGSCSSGPSCGYSHID---------PDSFAGNCDQYSGATYGFCPLGASCKFSHTLK 190 (285)
T ss_pred cCCCcccccccceeccCCCCCccccC---------cccccccccccCcccccccCCCCccccccccc
Confidence 37789999779999999999999975 2234577888884 46999999999999987
No 25
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=93.33 E-value=0.057 Score=32.47 Aligned_cols=19 Identities=32% Similarity=0.828 Sum_probs=15.5
Q ss_pred ccccccCccccCCCCCCCCCCC
Q 020338 287 VCRMVLAGDVCPYGHRCHFRHA 308 (327)
Q Consensus 287 ~Ck~Fl~gG~CpyG~rCRFaH~ 308 (327)
+|++|. .|++|+.|.|.|+
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 488754 3999999999995
No 26
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.28 E-value=0.032 Score=52.53 Aligned_cols=28 Identities=29% Similarity=0.746 Sum_probs=25.2
Q ss_pred cccccccccCccccCCCCCCCCCCCCch
Q 020338 284 KTEVCRMVLAGDVCPYGHRCHFRHALTE 311 (327)
Q Consensus 284 KTk~Ck~Fl~gG~CpyG~rCRFaH~~~E 311 (327)
-..+|+.|..+|||-||+.|.|+|...+
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred CcccccchhhcccccCCchhhhhhhhhh
Confidence 4568999999999999999999999874
No 27
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.03 Score=58.26 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=23.8
Q ss_pred ccccccccCccccCCCCCCCCCCCCchhhhh
Q 020338 285 TEVCRMVLAGDVCPYGHRCHFRHALTEQERF 315 (327)
Q Consensus 285 Tk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrkl 315 (327)
..+|-++..+..|.. ++|-|.|..+.+..+
T Consensus 61 e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~ 90 (667)
T KOG4791|consen 61 EIPCYWENQPTGCQK-LNCGFRHNRPPLKGV 90 (667)
T ss_pred cccceeecCCCccCC-CccccccCCCchhhh
Confidence 568999999866986 899999977666543
No 28
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=0.19 Score=52.56 Aligned_cols=55 Identities=29% Similarity=0.633 Sum_probs=43.8
Q ss_pred ccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCchhh
Q 020338 248 ELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQE 313 (327)
Q Consensus 248 kLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elr 313 (327)
.-|.+|+ ...|++++.|.|.|....+.. ...|.+|+.+=.|+. .|+|.|+.....
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al~n--------~t~C~~w~~~~~C~k--~C~YRHSe~~~k 58 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAALGN--------ETVCTLWQEGRCCRK--VCRYRHSEIDKK 58 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHhcC--------cchhhhhhhcCcccc--cccchhhHHhhh
Confidence 3587775 789999999999998887753 468999999855654 999999976554
No 29
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=89.58 E-value=0.25 Score=49.60 Aligned_cols=29 Identities=41% Similarity=0.457 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 95 AAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 95 ~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
..+|..+||.||+.|+.+|.||...|+-|
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999998877
No 30
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=0.16 Score=50.00 Aligned_cols=31 Identities=35% Similarity=1.053 Sum_probs=27.9
Q ss_pred cccccCcccccCCCCCCCCCCCccccCcccc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHGIEELR 275 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr 275 (327)
|...+|+.|..+|.|-|||.|.|.|+...+.
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~r~DyK 214 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHDRSDYK 214 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhhhhhcc
Confidence 6778999999999999999999999988663
No 31
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=88.05 E-value=0.17 Score=50.27 Aligned_cols=25 Identities=44% Similarity=0.909 Sum_probs=22.7
Q ss_pred ccccccccCccccCCCCC-CCCCCCCc
Q 020338 285 TEVCRMVLAGDVCPYGHR-CHFRHALT 310 (327)
Q Consensus 285 Tk~Ck~Fl~gG~CpyG~r-CRFaH~~~ 310 (327)
-.+|+.|+++ .|..|++ |+|+|+..
T Consensus 37 ~eVCReF~rn-~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 37 LEVCREFLRN-TCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHhc-cccCCCccccccCCCC
Confidence 3689999997 9999999 99999975
No 32
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=87.11 E-value=0.99 Score=34.50 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=26.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020338 80 DMINRHNLCLTRLREAAREAEALRQENDSLRT 111 (327)
Q Consensus 80 ~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~ 111 (327)
.--.||...|..=+....|.+.|+++|.+||.
T Consensus 23 ~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 23 NFLKRYNKVLLDRAALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999998888888899999999998885
No 33
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=0.19 Score=49.52 Aligned_cols=30 Identities=27% Similarity=0.761 Sum_probs=26.2
Q ss_pred ccccccccccCccccCCCCCCCCCCCCchh
Q 020338 283 YKTEVCRMVLAGDVCPYGHRCHFRHALTEQ 312 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~El 312 (327)
|-.-+|+.|..+|+|-||+.|.|.|...+.
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 445689999999999999999999997753
No 34
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=86.57 E-value=0.22 Score=49.26 Aligned_cols=31 Identities=32% Similarity=0.764 Sum_probs=27.5
Q ss_pred cccccccccCccccCCCCCCCCCCCCchhhhh
Q 020338 284 KTEVCRMVLAGDVCPYGHRCHFRHALTEQERF 315 (327)
Q Consensus 284 KTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrkl 315 (327)
|+.+|-+|..| .|.-|..|.|+|+....++.
T Consensus 91 KSvvCafFk~g-~C~KG~kCKFsHdl~~~~k~ 121 (343)
T KOG1763|consen 91 KSVVCAFFKQG-TCTKGDKCKFSHDLAVERKK 121 (343)
T ss_pred hHHHHHHHhcc-CCCCCCcccccchHHHhhhc
Confidence 78999999996 99999999999998876654
No 35
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=83.63 E-value=3.7 Score=43.79 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=39.1
Q ss_pred HHHHHH-HhhHHHHHHHHHH------HHHHHHHHHhhhhhhhhhhhhHHhHHHHHhh
Q 020338 76 QQHQDM-INRHNLCLTRLRE------AAREAEALRQENDSLRTVNRELNKHVSLLIK 125 (327)
Q Consensus 76 ~q~q~~-~~r~~lcl~rl~~------~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~ 125 (327)
..||+| -||-.-|++|-.. .-.-+.+|=.||..||.+|.-|.++|.+|.-
T Consensus 281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 345566 6999999998653 2234567889999999999999999999863
No 36
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.48 E-value=2.2 Score=35.66 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.++++.-.|+++++.||++|...|.+|...+..|-
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778889999999999999999999999999884
No 37
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.33 E-value=3 Score=40.27 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=43.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 75 QQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 75 ~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+-+|-||-++|+.|--.|.+..+|-++|+.||.+|-+.=.+++.||.-|
T Consensus 127 v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 127 VPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999988888888777655
No 38
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.08 E-value=0.53 Score=47.15 Aligned_cols=24 Identities=33% Similarity=1.059 Sum_probs=22.3
Q ss_pred ccCcccccCCCCCCCCCCCccccCc
Q 020338 248 ELCNKWQETGACPYGDHCQFAHGIE 272 (327)
Q Consensus 248 kLCr~f~~~G~C~yGD~C~FAHd~~ 272 (327)
.+|++|+ .|.|.||+.|+|.|...
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCc
Confidence 7999996 89999999999999876
No 39
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=82.07 E-value=9 Score=31.10 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=37.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhh
Q 020338 78 HQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIK 125 (327)
Q Consensus 78 ~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~ 125 (327)
.++|+.+-...=.-|.+....+++.+.||..|+..|.=|...|.=|..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444568889999999999999999999999988877764
No 40
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=81.71 E-value=0.58 Score=45.28 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=22.8
Q ss_pred cccccccccCccccCCCCCCCCCCCCc
Q 020338 284 KTEVCRMVLAGDVCPYGHRCHFRHALT 310 (327)
Q Consensus 284 KTk~Ck~Fl~gG~CpyG~rCRFaH~~~ 310 (327)
+...|..|..+ .|++|..|-|.|...
T Consensus 151 rea~C~~~e~~-~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 151 REAICGQFERT-ECSRGGACNFMHVKR 176 (260)
T ss_pred hhhhhcccccc-cCCCCCcCcchhhhh
Confidence 45689999998 899999999999863
No 41
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=79.71 E-value=0.6 Score=45.15 Aligned_cols=34 Identities=32% Similarity=0.595 Sum_probs=29.4
Q ss_pred ccccccccccCccccCCCCCCCCCCCCchhhhhcC
Q 020338 283 YKTEVCRMVLAGDVCPYGHRCHFRHALTEQERFMG 317 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrkl~~ 317 (327)
.|+.+|-.|+.+ .|..|..|.|+|+..+.+++..
T Consensus 83 pK~~vcalF~~~-~c~kg~~ckF~h~~ee~r~~eK 116 (299)
T COG5252 83 PKTVVCALFLNK-TCAKGDACKFAHGKEEARKTEK 116 (299)
T ss_pred chhHHHHHhccC-ccccCchhhhhcchHHHhhhcc
Confidence 378999999997 8999999999999888776543
No 42
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.12 E-value=7.6 Score=33.20 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 89 LTRLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 89 l~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+.-|.+.-.++..|=.||++||.+|..|.++|.-+
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667778888899999999999999999866
No 43
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=78.38 E-value=1.3 Score=28.26 Aligned_cols=20 Identities=40% Similarity=0.963 Sum_probs=14.4
Q ss_pred ccccccCccccCCCCCCCCCC
Q 020338 287 VCRMVLAGDVCPYGHRCHFRH 307 (327)
Q Consensus 287 ~Ck~Fl~gG~CpyG~rCRFaH 307 (327)
+|++-++||.|.. ..|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 5777777777764 6777776
No 44
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=75.93 E-value=11 Score=32.14 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhhh
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKS 126 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~~ 126 (327)
..|..--.++--+.+|++.|..-|..|.||+.+|-.+
T Consensus 33 e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 33 EQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667778899999999999999999999543
No 45
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.33 E-value=14 Score=31.20 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.-|.+.-+.+..|=.||++||.+|..|..+|.-+.
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556667777899999999999999998874
No 46
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=71.94 E-value=4.6 Score=43.76 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=7.9
Q ss_pred ccCCCCCCCCCCCC
Q 020338 296 VCPYGHRCHFRHAL 309 (327)
Q Consensus 296 ~CpyG~rCRFaH~~ 309 (327)
+|+.-..|.|.|..
T Consensus 652 ~c~~~~sc~fYh~r 665 (681)
T KOG3702|consen 652 NCPNNPSCTFYHER 665 (681)
T ss_pred cCCCCcccccccCC
Confidence 45544556677763
No 47
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.20 E-value=13 Score=36.02 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhHHH
Q 020338 96 AREAEALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 96 ~~e~~~lr~en~~lr~~n~~l~~~l~ 121 (327)
..++..|+.||.+||..|.+|+..+.
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 48
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.83 E-value=9.2 Score=28.86 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
.++...-.|+++|..++.+|+..|.+|...+..|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666888999999999999999999999988
No 49
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=68.52 E-value=3.6 Score=29.89 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020338 74 QQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNR 114 (327)
Q Consensus 74 ~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~ 114 (327)
-.+|..+++..-..=-.++.+...|+..|..||..||.-+.
T Consensus 5 ~~~qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 5 YSRQNRELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 36777888888888888999999999999999999997653
No 50
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=66.41 E-value=34 Score=29.40 Aligned_cols=70 Identities=23% Similarity=0.203 Sum_probs=44.5
Q ss_pred ccCCCCcccccCCCCCCCCCCh--------hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020338 41 VMAQPETTLSHNPYNDPTIHDS--------LYYSRLLIRQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTV 112 (327)
Q Consensus 41 ~~~~~~~~~s~~p~~~~~~~d~--------~~~~r~~~~~~~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~ 112 (327)
-+|.+.|+-|+.|-+.-...|- .--+|+ |-|--||-| -|-|.+.-+++...||..||.+
T Consensus 26 r~~~grtprs~~P~~~~~~l~a~e~~~d~~EEKaRl------ItQVLELQn-------TLdDLSqRVdsVKEEnLKLrSE 92 (120)
T KOG3650|consen 26 RILYGRTPRSLLPKMMNADLDAVEAENDVEEEKARL------ITQVLELQN-------TLDDLSQRVDSVKEENLKLRSE 92 (120)
T ss_pred cccCCCCccccCcccccccccccccccChHHHHHHH------HHHHHHHHH-------HHHHHHHHHHHHHHhhhhhhhh
Confidence 3445667777777554433221 233566 444333332 4778888999999999999999
Q ss_pred hhhHHhHHHHH
Q 020338 113 NRELNKHVSLL 123 (327)
Q Consensus 113 n~~l~~~l~ll 123 (327)
|.-|-.-|.-|
T Consensus 93 NQVLGQYIeNL 103 (120)
T KOG3650|consen 93 NQVLGQYIENL 103 (120)
T ss_pred hHHHHHHHHHH
Confidence 99665555444
No 51
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=64.07 E-value=30 Score=25.83 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=8.0
Q ss_pred HHHhhhhhhhhhhhhHHhHH
Q 020338 101 ALRQENDSLRTVNRELNKHV 120 (327)
Q Consensus 101 ~lr~en~~lr~~n~~l~~~l 120 (327)
.|-.||..|+..+..|...+
T Consensus 37 ~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 37 ELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 52
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=63.93 E-value=29 Score=32.70 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 75 QQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 75 ~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+.-.+.+++....=+.-..+.......|+.||.+|+.+|.+|...+..+
T Consensus 47 ~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 47 VSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555566666666666666655555544
No 53
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=62.15 E-value=18 Score=31.90 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhhhHHhHH
Q 020338 74 QQQQHQDMINRHNLCLTRLREAA----REAEALRQENDSLRTVNRELNKHV 120 (327)
Q Consensus 74 ~~~q~q~~~~r~~lcl~rl~~~~----~e~~~lr~en~~lr~~n~~l~~~l 120 (327)
.+.+.|.++.-||-=+.+|..-. .|+..||.+.+++...|+-|.++|
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45666777777777776665544 589999999999999999988875
No 54
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=61.74 E-value=5.3 Score=25.56 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=16.8
Q ss_pred ccCcccccCCCCCCCCCCCccc
Q 020338 248 ELCNKWQETGACPYGDHCQFAH 269 (327)
Q Consensus 248 kLCr~f~~~G~C~yGD~C~FAH 269 (327)
.+|++-+..|.|. -+.|.|.|
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QH 21 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQH 21 (23)
T ss_pred CCCccccCCCeeC-CCCCCccc
Confidence 4799887666997 56899998
No 55
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.02 E-value=17 Score=28.80 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=11.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 020338 75 QQQHQDMINRHNLCLTRLREAARE 98 (327)
Q Consensus 75 ~~q~q~~~~r~~lcl~rl~~~~~e 98 (327)
-.++|.++|.+.+==-.+.+.-.+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555433333333333
No 56
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=60.73 E-value=3.7 Score=43.51 Aligned_cols=28 Identities=25% Similarity=0.869 Sum_probs=22.7
Q ss_pred cccccccccCc--cccCCCCCCCCCCCCch
Q 020338 284 KTEVCRMVLAG--DVCPYGHRCHFRHALTE 311 (327)
Q Consensus 284 KTk~Ck~Fl~g--G~CpyG~rCRFaH~~~E 311 (327)
...+|+....+ ..|.||++|||.|+..-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~a 104 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEA 104 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHH
Confidence 35678877776 58999999999999753
No 57
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.57 E-value=38 Score=26.79 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh
Q 020338 94 EAAREAEALRQENDSLRTVNRE 115 (327)
Q Consensus 94 ~~~~e~~~lr~en~~lr~~n~~ 115 (327)
.|.+-++.|+.||.+|+..|..
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~ 36 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333
No 58
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=59.39 E-value=15 Score=30.80 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+.+..+|++.|++|+.+|+.+|.=|.+-+.+.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566788888888888888888777777665
No 59
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=58.95 E-value=18 Score=36.03 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=31.2
Q ss_pred HHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 020338 70 IRQ-QQQQQHQDMINRHNLCLTRLREAAREAEALRQ 104 (327)
Q Consensus 70 ~~~-~~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~ 104 (327)
..| +++.+-+|+-+||.-|+.-|+||=.|+..||.
T Consensus 269 e~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 269 ESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345 48899999999999999999999999999985
No 60
>PRK10722 hypothetical protein; Provisional
Probab=54.02 E-value=96 Score=30.23 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=46.0
Q ss_pred hHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhhhHHhHHHHHhhhhhhhhhc
Q 020338 64 YYSRLLIRQ-QQQQQHQDMINRHNLCLTRLREAAR-EAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLS 133 (327)
Q Consensus 64 ~~~r~~~~~-~~~~q~q~~~~r~~lcl~rl~~~~~-e~~~lr~en~~lr~~n~~l~~~l~ll~~~~~~~~~~ 133 (327)
.+.++..-| -++++-.|--.|| .||++.++ +++.||+.+.+|+....++.++|.-|. -|+-++.
T Consensus 145 PL~qlwr~~Q~l~l~LaeEr~Ry----~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT--dIERqLS 210 (247)
T PRK10722 145 PLYQLWRDGQALQLALAEERQRY----QKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLT--DIERQLS 210 (247)
T ss_pred HHHHHHHHhhHHHHhHHHHHHHH----HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 445553333 3556666666776 58877665 899999999999999999999999886 3555444
No 61
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=53.97 E-value=9.8 Score=31.51 Aligned_cols=32 Identities=38% Similarity=0.451 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
|.+.+.+++.|..||.+|+..+.+|...|.-+
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55667778888888888888888888887766
No 62
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=53.34 E-value=19 Score=39.29 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=27.2
Q ss_pred ccCCcccccchhhhhcccCCc---ccccCcccccCCCCCCCCCCCccccCcc
Q 020338 225 VKGGQQEEEPLELEVYNQGMF---KTELCNKWQETGACPYGDHCQFAHGIEE 273 (327)
Q Consensus 225 ~~gg~~~e~~~e~e~~n~~k~---KTkLCr~f~~~G~C~yGD~C~FAHd~~E 273 (327)
.++|.....+..+........ -...|.+|. .|. ++.|.|+|....
T Consensus 519 ~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~---~Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 519 GHGGSNPDSLSRHSEKKNELTKAKILTRCKYGP---ACT-SAECEFAHPTAA 566 (681)
T ss_pred ccccCCCcchhhCcccccccccceeeccccCCC---cCC-chhhhhcCCcch
Confidence 455555555544433322222 245688886 588 889999997654
No 63
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=53.01 E-value=6.3 Score=38.36 Aligned_cols=27 Identities=26% Similarity=0.764 Sum_probs=23.6
Q ss_pred CcccccCcccccCCCCCCCCCCCccccC
Q 020338 244 MFKTELCNKWQETGACPYGDHCQFAHGI 271 (327)
Q Consensus 244 k~KTkLCr~f~~~G~C~yGD~C~FAHd~ 271 (327)
.++...|..|. .+.|.+|..|.|.|-.
T Consensus 149 ~~rea~C~~~e-~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 149 DFREAICGQFE-RTECSRGGACNFMHVK 175 (260)
T ss_pred chhhhhhcccc-cccCCCCCcCcchhhh
Confidence 57888999996 6699999999999964
No 64
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=52.40 E-value=24 Score=29.24 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh----hhhhHHhHHHHH
Q 020338 90 TRLREAAREAEALRQENDSLRT----VNRELNKHVSLL 123 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~----~n~~l~~~l~ll 123 (327)
.++.+.-.|..+|.+||.+|+. +|.+=...|.||
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888999999999998887 777777777775
No 65
>PRK14127 cell division protein GpsB; Provisional
Probab=52.34 E-value=46 Score=28.49 Aligned_cols=28 Identities=43% Similarity=0.510 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 96 AREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 96 ~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
.+|.+.|+.||.+|+....++..+++-.
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3466666677777766666666666643
No 66
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.97 E-value=40 Score=32.62 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=24.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhh-----------hhhhhhhHHhHHHHH
Q 020338 82 INRHNLCLTRLREAAREAEALRQENDS-----------LRTVNRELNKHVSLL 123 (327)
Q Consensus 82 ~~r~~lcl~rl~~~~~e~~~lr~en~~-----------lr~~n~~l~~~l~ll 123 (327)
.+.+..=+..|.+.-+|-+.||+|+++ |+.+|..|.+.|.+-
T Consensus 58 ~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 58 FDGISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333444444556666666666666543 566777777666654
No 67
>smart00338 BRLZ basic region leucin zipper.
Probab=51.27 E-value=29 Score=25.98 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 91 RLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
++.+.-.++..|..||.+|+.....|...+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777777776666655
No 68
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=50.26 E-value=47 Score=31.31 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020338 89 LTRLREAAREAEALRQENDSLRTVNR 114 (327)
Q Consensus 89 l~rl~~~~~e~~~lr~en~~lr~~n~ 114 (327)
+..+.+..+|-+.|+.||++|+..+.
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666655544444
No 69
>PRK14127 cell division protein GpsB; Provisional
Probab=49.60 E-value=23 Score=30.31 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
|.+-+.+.++|-.||.+|+..|..|...|.-+-
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777766553
No 70
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=48.96 E-value=51 Score=28.61 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHhHHHH
Q 020338 95 AAREAEALRQENDSLRTVNRELNKHVSL 122 (327)
Q Consensus 95 ~~~e~~~lr~en~~lr~~n~~l~~~l~l 122 (327)
.-+-+..|=.||..||.+|..|.+||+.
T Consensus 27 lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 27 LKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3344555667899999999988888876
No 71
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=48.13 E-value=74 Score=24.30 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=35.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHH
Q 020338 79 QDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 79 q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ 121 (327)
.++=+=.+.-|.|-...-.|-++|-+|+..|+..|.+|...|.
T Consensus 15 ~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 15 IRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778888899999999999999999999998887653
No 72
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.88 E-value=1.2e+02 Score=23.76 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH
Q 020338 85 HNLCLTRLREAAREAEALRQENDSLRTVNREL 116 (327)
Q Consensus 85 ~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l 116 (327)
-+.-+.+|.+|-.|+..|+.||..|+..+.++
T Consensus 35 Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 35 RDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566778888888888888888888776543
No 73
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.77 E-value=99 Score=28.92 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 96 AREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 96 ~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
.+++..|..||.+|+..+.++...+..|
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555554443
No 74
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.85 E-value=1.3e+02 Score=24.49 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 74 QQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 74 ~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
+.++-.++-+..+---.-..++..-.++|++||..|...-.-.+.||--|+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666776666544445566666778899999999888888888886665
No 75
>smart00338 BRLZ basic region leucin zipper.
Probab=43.66 E-value=90 Score=23.27 Aligned_cols=15 Identities=40% Similarity=0.632 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhhhhh
Q 020338 96 AREAEALRQENDSLR 110 (327)
Q Consensus 96 ~~e~~~lr~en~~lr 110 (327)
..+++.|+.|+..|+
T Consensus 46 ~~~~~~l~~e~~~lk 60 (65)
T smart00338 46 KKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 76
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.46 E-value=70 Score=25.08 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020338 82 INRHNLCLTRLREAAREAEALRQENDSLR 110 (327)
Q Consensus 82 ~~r~~lcl~rl~~~~~e~~~lr~en~~lr 110 (327)
+.+--.+.....+...|+++|+.|+.++|
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444444444443
No 77
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=43.03 E-value=40 Score=26.04 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.++...|++.+..|...|...|.+|...++-|.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457778888888999999999998888888774
No 78
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=42.60 E-value=38 Score=24.67 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHH
Q 020338 93 REAAREAEALRQENDSLRTVNRELN 117 (327)
Q Consensus 93 ~~~~~e~~~lr~en~~lr~~n~~l~ 117 (327)
.+...++..|..||..|+..+..|.
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666777777766666554
No 79
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=41.90 E-value=80 Score=31.81 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhhh
Q 020338 83 NRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKS 126 (327)
Q Consensus 83 ~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~~ 126 (327)
+=++.||..+.++..+...|-+||.+|+..+.+|.++|.-++.+
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~ 173 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNA 173 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999888763
No 80
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=39.27 E-value=1.9e+02 Score=22.75 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=4.1
Q ss_pred Hhhhhhhhhhh
Q 020338 103 RQENDSLRTVN 113 (327)
Q Consensus 103 r~en~~lr~~n 113 (327)
|.||..||...
T Consensus 20 ~~EN~~Lr~q~ 30 (65)
T TIGR02449 20 KSENRLLRAQE 30 (65)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 81
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=39.11 E-value=52 Score=27.85 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 91 RLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
+.......++++..||+.|...|..|..+++.|-
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455666888888999999998888888884
No 82
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.63 E-value=85 Score=26.87 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHh
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRELNK 118 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~l~~ 118 (327)
..|....+|+++|..+-.+|=.+|..|.-
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666664443
No 83
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.74 E-value=89 Score=26.45 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 80 DMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 80 ~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+|-++...==..|....+|+++|+..-.+|=.+|..|.-...-|
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444456778888888888888888888888776555555
No 84
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=36.76 E-value=1.3e+02 Score=25.37 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 81 MINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 81 ~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
|-.-|--.++-.-|.+.-.+.||.||..|-++|+-|-+.+-|-
T Consensus 31 lr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~~lt 73 (97)
T PF11418_consen 31 LRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQHGLT 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhCCC
Confidence 3344556666666778888999999999999999887766654
No 85
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.28 E-value=46 Score=35.08 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHhHH
Q 020338 91 RLREAAREAEALRQENDSLRTVNRELNKHV 120 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~~l~~~l 120 (327)
+|+++..|=+.|+.||.+||..+.++-.+|
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 345555566666666666665333333333
No 86
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.28 E-value=64 Score=29.54 Aligned_cols=51 Identities=29% Similarity=0.512 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhhhhhhhhhHHhHHHHHhhh--hhhhhhcCCCCCCcchhhhhhhcccccc
Q 020338 97 REAEALRQENDSLRTVNRELNKHVSLLIKS--SVNEQLSCGNNDAATSFGVVNGMRGLSI 154 (327)
Q Consensus 97 ~e~~~lr~en~~lr~~n~~l~~~l~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
.|..+|+.|+.+|+..|..|.+.+..|-+. -+++-|. +=+.|.+..|++-+
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~-------~L~~Im~RARkl~~ 156 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ-------TLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 455666666666666666666665555431 1234333 22556666665554
No 87
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=35.06 E-value=35 Score=29.59 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 020338 91 RLREAAREAEALRQENDSLRTVNRELN 117 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~~l~ 117 (327)
.|-.+.+|+.+|+.--.+|=.+|.-|+
T Consensus 16 ~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 16 QLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344556666666666666666666443
No 88
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.23 E-value=87 Score=23.36 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 020338 71 RQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVN 113 (327)
Q Consensus 71 ~~~~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n 113 (327)
|++...+.++|-++.+---....+...+++.|..|+..|...|
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555556666666555444444444444455555555444433
No 89
>PF14645 Chibby: Chibby family
Probab=33.67 E-value=45 Score=28.57 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 95 AAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 95 ~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
...|...||+||..|+-+|+=|.-.+.+|+
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLl 98 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLL 98 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888887777776
No 90
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=33.27 E-value=22 Score=36.18 Aligned_cols=27 Identities=22% Similarity=0.679 Sum_probs=22.9
Q ss_pred cccccCcccccCCCCCCCCCCCccccCc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHGIE 272 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd~~ 272 (327)
....+|.+|. .|.|+.|+.|.|.|...
T Consensus 159 n~p~Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 159 NRPHICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred CCCcccccee-eccccccccccccccCC
Confidence 4567899996 88999999999999754
No 91
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.27 E-value=2e+02 Score=26.90 Aligned_cols=22 Identities=5% Similarity=-0.017 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhHH
Q 020338 96 AREAEALRQENDSLRTVNRELN 117 (327)
Q Consensus 96 ~~e~~~lr~en~~lr~~n~~l~ 117 (327)
..|++.++.|+..|++.|.++.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 92
>KOG4815 consensus Muscular protein implicated in muscular dystrophy phenotype [General function prediction only]
Probab=32.01 E-value=2.8e+02 Score=28.55 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=16.7
Q ss_pred hhhhhhhhhHHhHHHHHhh
Q 020338 107 DSLRTVNRELNKHVSLLIK 125 (327)
Q Consensus 107 ~~lr~~n~~l~~~l~ll~~ 125 (327)
..|-.+|+||..|+.+|+.
T Consensus 333 hqll~ankdlle~iq~lv~ 351 (511)
T KOG4815|consen 333 HQLLLANKDLLEHIQLLVK 351 (511)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4678899999999999985
No 93
>COG4951 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.61 E-value=23 Score=35.30 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhhhhhhhhhc
Q 020338 91 RLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLS 133 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~~~~~~~~~ 133 (327)
+|.+..+|++|||+||++ +|+|+-.+.++.++.
T Consensus 2 ~~~~~~~e~aa~r~e~~~----------~~~l~E~~~~e~~~~ 34 (361)
T COG4951 2 VHKSDSDELAALRAENAR----------LVSLLEAHGIEWRRK 34 (361)
T ss_pred ccchhhHHHHHHHHHhhh----------heeccCccCceeeee
Confidence 456778999999999875 345554444454444
No 94
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.39 E-value=69 Score=31.42 Aligned_cols=35 Identities=40% Similarity=0.676 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh-------hHHhHHHHHhh
Q 020338 91 RLREAAREAEALRQENDSLRTVNR-------ELNKHVSLLIK 125 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~-------~l~~~l~ll~~ 125 (327)
-+.|.++|-+-|+.||..||.-|. +|.-+|.++-+
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 356778888888888888887665 44445555443
No 95
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=29.75 E-value=61 Score=32.68 Aligned_cols=21 Identities=29% Similarity=0.158 Sum_probs=10.0
Q ss_pred HHHHHHhhhhhhhhhhhhHHh
Q 020338 98 EAEALRQENDSLRTVNRELNK 118 (327)
Q Consensus 98 e~~~lr~en~~lr~~n~~l~~ 118 (327)
..-.|+.||.+||.+|.+|..
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~ 78 (337)
T PRK14872 58 HALVLETENFLLKERIALLEE 78 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554433
No 96
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.10 E-value=47 Score=25.05 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhh
Q 020338 94 EAAREAEALRQENDSLRTV 112 (327)
Q Consensus 94 ~~~~e~~~lr~en~~lr~~ 112 (327)
.|..+++.|+.||..||+.
T Consensus 26 ~a~~rl~~l~~EN~~Lr~e 44 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAE 44 (52)
T ss_pred hHHHHHHHHHHHHHHHHHH
No 97
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.73 E-value=42 Score=33.86 Aligned_cols=30 Identities=27% Similarity=0.856 Sum_probs=24.5
Q ss_pred cccccccccCc-cccCCCCCCCCCCCCchhh
Q 020338 284 KTEVCRMVLAG-DVCPYGHRCHFRHALTEQE 313 (327)
Q Consensus 284 KTk~Ck~Fl~g-G~CpyG~rCRFaH~~~Elr 313 (327)
..+.|++|..+ |.||||..|-|.|....-.
T Consensus 248 s~~~c~yf~~~~g~cPf~s~~~y~h~~~~~~ 278 (344)
T KOG1039|consen 248 SAKDCKYFSQGLGSCPFGSKCFYKHLLPSGA 278 (344)
T ss_pred hccchhhhcCCCCCCCCCCcccccccccccc
Confidence 45789999886 6899999999999876544
No 98
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.69 E-value=1.7e+02 Score=26.80 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhh
Q 020338 91 RLREAAREAEALRQENDSLRTVNRELNKHVSLLIK 125 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~ 125 (327)
.....-.|++.|+.+|..|...|.+|.+.+..+-+
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777888888888888888777776654
No 99
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.27 E-value=1.5e+02 Score=28.65 Aligned_cols=32 Identities=34% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 93 REAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 93 ~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.+...=++.|..||..||.....|.+.|..|.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666664
No 100
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=28.19 E-value=1.8e+02 Score=27.11 Aligned_cols=50 Identities=26% Similarity=0.289 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 71 RQQQQQQHQDMINRHNLCLTRLREAAR-EAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 71 ~~~~~~q~q~~~~r~~lcl~rl~~~~~-e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.|.++++--|--.|| .||+..++ |+++||+.+..|+..=.+-.+.|.=|.
T Consensus 107 ~Q~lql~L~eEr~Ry----~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 107 QQVLQLQLSEERARY----QRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred hHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455777777878887 58887774 899999999999988777777787775
No 101
>PHA00489 scaffolding protein
Probab=27.93 E-value=1.4e+02 Score=25.25 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=31.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHH
Q 020338 81 MINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSL 122 (327)
Q Consensus 81 ~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~l 122 (327)
|-.-|--.++-.-|.+.-.+.|+.|+..|-++|+-|-+.|-+
T Consensus 32 lr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFrqlg~ 73 (101)
T PHA00489 32 LRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFRQLGP 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHcCC
Confidence 344566666666677778899999999999999976655443
No 102
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=27.58 E-value=33 Score=35.03 Aligned_cols=25 Identities=28% Similarity=0.829 Sum_probs=22.8
Q ss_pred ccccccccCccccCCCCCCCCCCCCc
Q 020338 285 TEVCRMVLAGDVCPYGHRCHFRHALT 310 (327)
Q Consensus 285 Tk~Ck~Fl~gG~CpyG~rCRFaH~~~ 310 (327)
-.+|.+|..| .|+.|..|.|.|...
T Consensus 161 p~Icsf~v~g-eckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFVKG-ECKRGAECPYRHEKP 185 (377)
T ss_pred Cccccceeec-cccccccccccccCC
Confidence 4689999997 999999999999877
No 103
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=26.88 E-value=61 Score=31.70 Aligned_cols=42 Identities=33% Similarity=0.423 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHH--HHHhh
Q 020338 84 RHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHV--SLLIK 125 (327)
Q Consensus 84 r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l--~ll~~ 125 (327)
=++.|-..|.|+=.|+..+|+||.++|.+=.-...+. .||..
T Consensus 128 s~e~~~~e~~~~r~~~~~~~~e~~R~r~~~~~p~~~~Lagll~~ 171 (289)
T PF09544_consen 128 SAESCQAELLEARAEAQELREENERLRAEAPGPEGLALAGLLAE 171 (289)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhccCCcCceEEeeEEcc
Confidence 4778888899999999999999999998765444444 45543
No 104
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.62 E-value=2.6e+02 Score=24.05 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=40.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 75 QQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 75 ~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
++++++-.++.+.=...++....|.+.|...+..|..-+.++.+.++.+-
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888877888888888888888888888888888888777553
No 105
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.19 E-value=3.5e+02 Score=24.90 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHH
Q 020338 74 QQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 74 ~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ 121 (327)
+..+...+..|-+.--.++...-.+++.+|.+..++|..+......|.
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666677777778888888888888888887776665
No 106
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.92 E-value=2.6e+02 Score=21.98 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=12.6
Q ss_pred HHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 97 REAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 97 ~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.+.++++.|++.|..-|.-=..+|.-+|
T Consensus 28 ~q~~~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 28 AQEKTWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444443334444443
No 107
>KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair]
Probab=23.50 E-value=39 Score=38.01 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=26.9
Q ss_pred CCCCCceeeeCCCCChhh---hhhhHHHhhhhccCCC
Q 020338 12 NPYSNHGVASSKSQDDEN---ADAFASLYSSLVMAQP 45 (327)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~---~~~f~sly~~~~~~~~ 45 (327)
-.|.+-+||-..-|-|+. -++|+|||.||.+.--
T Consensus 545 e~yEGatVIEp~kGfY~~PIATLDFaSLYPSIMmahN 581 (1066)
T KOG0969|consen 545 EQYEGATVIEPRKGFYDKPIATLDFASLYPSIMMAHN 581 (1066)
T ss_pred ccccccEEeecccccCCCCceeeehhhhhhHHHHHhh
Confidence 467788899877776654 4799999999998754
No 108
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.24 E-value=1.3e+02 Score=24.12 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 91 RLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
++.++-++++.|+.+...++....-+..++.+|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666677777777777777777666676665
No 109
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.23 E-value=79 Score=33.33 Aligned_cols=35 Identities=37% Similarity=0.375 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.|+-+.-.|+.-||++|--|+..|-||+-.+.-+.
T Consensus 403 aRe~eleqevkrLrq~nr~l~eqneelngtilTls 437 (502)
T KOG0982|consen 403 AREIELEQEVKRLRQPNRILSEQNEELNGTILTLS 437 (502)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHH
Confidence 36667778889999999999999999998765543
No 110
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=23.13 E-value=76 Score=31.07 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 97 REAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 97 ~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
.+.+.||.||.+||..+..|.+.++-.
T Consensus 39 ~~~~~lr~e~~~l~~~~~~~~~~~~~~ 65 (308)
T PF11382_consen 39 DQFDSLREENDELRAELDALQAQLNAA 65 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888877777776543
No 111
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.03 E-value=89 Score=22.65 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=7.1
Q ss_pred HHHHHHhhhhhhhhh
Q 020338 98 EAEALRQENDSLRTV 112 (327)
Q Consensus 98 e~~~lr~en~~lr~~ 112 (327)
|-++|..||..|++.
T Consensus 20 ~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 20 EYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555443
No 112
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=22.95 E-value=1.6e+02 Score=27.93 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH
Q 020338 74 QQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNREL 116 (327)
Q Consensus 74 ~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l 116 (327)
+..+.|++-.-|.-.+.|+++-+.|+|-.+-|+.|-+..+..+
T Consensus 197 l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f 239 (281)
T PF06472_consen 197 LNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRF 239 (281)
T ss_pred HHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHH
Confidence 4677788877888899999999999999999999988777643
No 113
>PF15058 Speriolin_N: Speriolin N terminus
Probab=22.75 E-value=77 Score=29.95 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=21.0
Q ss_pred HHHHhhhhhhhhhhhhHHhHHHHHhhh
Q 020338 100 EALRQENDSLRTVNRELNKHVSLLIKS 126 (327)
Q Consensus 100 ~~lr~en~~lr~~n~~l~~~l~ll~~~ 126 (327)
|-||+-+.+|=.+|.||+|.+-|+-++
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN 34 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIREN 34 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 567788888888888888888887653
No 114
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=22.10 E-value=69 Score=31.84 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020338 86 NLCLTRLREAAREAEALRQENDSLRTVNR 114 (327)
Q Consensus 86 ~lcl~rl~~~~~e~~~lr~en~~lr~~n~ 114 (327)
+-|-.-|.++-.|++.||.||.+||..+.
T Consensus 134 es~~~E~~~~r~~~~~~~~e~~~lr~~~~ 162 (295)
T TIGR02268 134 ASYQQEVVELRARNQLLEEENARLRRQQP 162 (295)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45667777888888999999999997765
No 115
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=21.99 E-value=70 Score=34.59 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=22.5
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhhhhhhh
Q 020338 85 HNLCL-TRLREAAREAEALRQENDSLRT 111 (327)
Q Consensus 85 ~~lcl-~rl~~~~~e~~~lr~en~~lr~ 111 (327)
|.+-| .||.++-.|-+.||.||+.||-
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~ 330 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKR 330 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444 6999999999999999998884
No 116
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=21.73 E-value=51 Score=21.81 Aligned_cols=10 Identities=50% Similarity=1.624 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q 020338 257 GACPYGDHCQ 266 (327)
Q Consensus 257 G~C~yGD~C~ 266 (327)
|.|++|.+|.
T Consensus 13 ~gC~WGQ~~~ 22 (27)
T PF08098_consen 13 GGCPWGQNCY 22 (27)
T ss_dssp TT-SSS-SS-
T ss_pred cCCccccccc
Confidence 5699997774
No 117
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=20.73 E-value=57 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 97 REAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 97 ~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+=+..|+.|...|+..|+||+-.|.+-
T Consensus 21 ~tL~~LH~EIe~Lq~~~~dL~~kL~m~ 47 (60)
T PF14916_consen 21 QTLKGLHAEIERLQKRNKDLTFKLIMK 47 (60)
T ss_pred HHHHHHHHHHHHHHHhccccceeeeec
Confidence 336678888888888888887777654
No 118
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=20.72 E-value=5e+02 Score=21.59 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhhhhhhhhhcCCCCCCcchhhhhhhcccc
Q 020338 74 QQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKSSVNEQLSCGNNDAATSFGVVNGMRGL 152 (327)
Q Consensus 74 ~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
.|.+.++++++-..=+.. .-.=++.+++.+.++|....+..+.|--.+... .|.+- ....+|+|.++||
T Consensus 40 tI~qq~~~~~~L~~~~~~---~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d-----~Ca~~--~~P~~V~d~L~~~ 108 (110)
T PF10828_consen 40 TIQQQEDANQELKAQLQQ---NRQAVEEQQKREQQLRQQSEERRESIKTALKDD-----PCANT--AVPDAVIDSLRRL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----ccccC--CCCHHHHHHHHHh
Confidence 566666665544322222 222245666777789988888888877776422 35332 3347888999887
No 119
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.44 E-value=1.5e+02 Score=27.07 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHV 120 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l 120 (327)
|-+-.+|-+.||-|+.+||-+=+||.-.|
T Consensus 19 LE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 19 LESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556999999999999999999998888
No 120
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.40 E-value=1.9e+02 Score=23.76 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+++..|.+.++-|+-|..+|..-|..|......+
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777777765553
Done!