Query 020338
Match_columns 327
No_of_seqs 149 out of 1168
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.7 3.6E-19 1.2E-23 136.0 3.7 71 241-311 6-76 (77)
2 2cqe_A KIAA1064 protein; CCCH 99.3 8.8E-13 3E-17 106.9 3.7 52 244-310 10-61 (98)
3 2d9n_A Cleavage and polyadenyl 99.3 2.1E-12 7.2E-17 99.9 3.5 61 242-313 5-65 (77)
4 2rhk_C Cleavage and polyadenyl 99.2 5E-12 1.7E-16 97.3 1.9 59 243-312 12-70 (72)
5 3d2q_A Muscleblind-like protei 99.1 2.1E-11 7.2E-16 92.9 3.4 66 244-314 3-69 (70)
6 2e5s_A Otthump00000018578; ZF- 99.0 8E-11 2.7E-15 95.6 1.4 68 243-315 16-84 (98)
7 3d2n_A Muscleblind-like protei 98.8 1.5E-09 5E-14 85.9 3.4 66 242-314 4-70 (83)
8 2rpp_A Muscleblind-like protei 98.6 1.9E-08 6.5E-13 80.7 3.0 67 241-314 11-78 (89)
9 2d9m_A Zinc finger CCCH-type d 98.3 8.3E-08 2.8E-12 74.1 0.3 46 245-291 18-64 (69)
10 2d9m_A Zinc finger CCCH-type d 98.1 7E-07 2.4E-11 68.9 1.0 35 280-315 15-49 (69)
11 1m9o_A Tristetraproline; Cys3H 98.1 2.3E-06 7.9E-11 64.7 3.5 36 280-315 7-42 (77)
12 2d9n_A Cleavage and polyadenyl 97.2 0.00014 4.7E-09 55.9 2.4 40 245-294 36-75 (77)
13 2cqe_A KIAA1064 protein; CCCH 97.0 0.00038 1.3E-08 56.1 3.1 25 283-308 11-35 (98)
14 3u9g_A Zinc finger CCCH-type a 96.4 0.0016 5.3E-08 60.3 3.0 27 246-273 88-118 (229)
15 2rhk_C Cleavage and polyadenyl 96.3 0.00077 2.6E-08 51.5 0.6 28 283-311 14-41 (72)
16 2fc6_A Nuclear, target of EGR1 96.2 0.0012 4.2E-08 48.0 0.9 28 245-272 18-45 (50)
17 2fc6_A Nuclear, target of EGR1 96.2 0.0011 3.6E-08 48.3 0.5 28 283-310 18-45 (50)
18 3u9g_A Zinc finger CCCH-type a 95.4 0.01 3.5E-07 54.9 3.9 51 241-311 145-199 (229)
19 3d2q_A Muscleblind-like protei 95.3 0.004 1.4E-07 46.9 0.8 31 243-275 38-68 (70)
20 3s9g_A Protein hexim1; cyclin 94.5 0.069 2.4E-06 43.8 6.1 44 71-114 32-89 (104)
21 3d2n_A Muscleblind-like protei 94.4 0.015 5.2E-07 45.6 2.0 28 283-311 7-35 (83)
22 2e5s_A Otthump00000018578; ZF- 94.4 0.005 1.7E-07 49.7 -1.0 29 282-311 17-46 (98)
23 2rpp_A Muscleblind-like protei 92.9 0.028 9.5E-07 44.8 1.0 27 284-311 16-43 (89)
24 2yy0_A C-MYC-binding protein; 91.0 0.16 5.4E-06 37.0 3.0 29 96-124 18-46 (53)
25 2lhn_A Nuclear polyadenylated 90.1 0.046 1.6E-06 43.0 0.0 21 247-271 9-29 (80)
26 3u1l_A PRE-mRNA-splicing facto 89.6 0.079 2.7E-06 48.6 0.6 26 246-272 69-94 (240)
27 3u1l_A PRE-mRNA-splicing facto 89.6 0.067 2.3E-06 49.1 0.1 27 285-312 70-96 (240)
28 2wuj_A Septum site-determining 79.4 1.2 4E-05 32.5 2.6 29 92-120 29-57 (57)
29 3v33_A Ribonuclease ZC3H12A; r 79.3 0.44 1.5E-05 43.8 0.4 26 283-311 190-215 (223)
30 2jn6_A Protein CGL2762, transp 76.4 0.89 3E-05 34.6 1.3 25 94-118 63-87 (97)
31 2lhn_A Nuclear polyadenylated 76.1 0.66 2.3E-05 36.4 0.0 42 248-310 32-73 (80)
32 1dh3_A Transcription factor CR 71.0 6 0.0002 28.6 4.5 28 92-119 24-51 (55)
33 1hjb_A Ccaat/enhancer binding 64.3 7.6 0.00026 30.8 4.2 32 93-124 39-70 (87)
34 2jee_A YIIU; FTSZ, septum, coi 64.0 30 0.001 27.2 7.6 50 75-124 26-75 (81)
35 1gu4_A CAAT/enhancer binding p 60.2 10 0.00035 29.4 4.2 32 93-124 39-70 (78)
36 1ci6_A Transcription factor AT 58.8 13 0.00044 27.3 4.4 32 92-123 25-56 (63)
37 2dgc_A Protein (GCN4); basic d 57.0 8.9 0.0003 28.4 3.3 30 90-119 30-59 (63)
38 2yy0_A C-MYC-binding protein; 54.4 8.4 0.00029 27.8 2.7 26 96-121 25-50 (53)
39 1no4_A Late, head morphogenesi 54.3 30 0.001 27.5 6.0 44 81-124 31-74 (97)
40 3mq7_A Bone marrow stromal ant 54.0 21 0.00073 30.0 5.4 20 90-109 85-104 (121)
41 1t2k_D Cyclic-AMP-dependent tr 53.6 35 0.0012 24.5 6.0 24 98-121 30-53 (61)
42 1go4_E MAD1 (mitotic arrest de 53.0 12 0.0004 30.5 3.6 26 98-123 13-38 (100)
43 1deb_A APC protein, adenomatou 51.5 15 0.00051 26.8 3.6 29 95-123 8-36 (54)
44 1jnm_A Proto-oncogene C-JUN; B 49.4 38 0.0013 24.5 5.6 29 94-122 26-54 (62)
45 2j5u_A MREC protein; bacterial 49.2 8.1 0.00028 35.4 2.4 22 100-121 22-43 (255)
46 1go4_E MAD1 (mitotic arrest de 48.7 15 0.0005 30.0 3.6 32 91-122 13-44 (100)
47 1nkp_B MAX protein, MYC proto- 45.0 22 0.00074 26.9 3.9 32 92-123 49-80 (83)
48 3v33_A Ribonuclease ZC3H12A; r 43.3 5 0.00017 36.8 0.0 25 246-273 191-215 (223)
49 1qqp_4 FMDV, protein (genome p 42.0 12 0.00042 29.4 2.0 45 1-45 27-80 (85)
50 1gd2_E Transcription factor PA 39.4 76 0.0026 24.0 6.1 29 93-121 32-60 (70)
51 1ci6_A Transcription factor AT 39.0 95 0.0033 22.6 6.4 40 71-117 18-57 (63)
52 1ik9_A DNA repair protein XRCC 36.9 73 0.0025 28.6 6.6 48 79-126 121-168 (213)
53 1jnm_A Proto-oncogene C-JUN; B 36.3 36 0.0012 24.6 3.7 39 72-110 18-56 (62)
54 1nlw_A MAD protein, MAX dimeri 35.0 37 0.0013 26.0 3.8 26 96-121 53-78 (80)
55 2v66_B Nuclear distribution pr 33.8 94 0.0032 25.6 6.2 49 74-125 15-63 (111)
56 1gd2_E Transcription factor PA 32.5 49 0.0017 25.0 4.0 22 100-121 46-67 (70)
57 1t2k_D Cyclic-AMP-dependent tr 32.4 57 0.002 23.4 4.2 39 71-109 17-55 (61)
58 3hnw_A Uncharacterized protein 31.4 1.4E+02 0.0046 25.1 7.0 43 75-117 67-109 (138)
59 3w03_C DNA repair protein XRCC 30.8 71 0.0024 28.4 5.4 36 85-120 147-182 (184)
60 4dzn_A Coiled-coil peptide CC- 30.7 51 0.0017 21.5 3.3 13 98-110 3-15 (33)
61 2jee_A YIIU; FTSZ, septum, coi 30.5 63 0.0021 25.3 4.4 26 90-115 13-38 (81)
62 2kqb_A Aprataxin and PNK-like 30.4 28 0.00097 27.8 2.5 10 296-305 58-67 (89)
63 2rn7_A IS629 ORFA; helix, all 29.9 0.76 2.6E-05 35.6 -6.7 28 97-124 71-98 (108)
64 1nkp_A C-MYC, MYC proto-oncoge 26.9 83 0.0029 24.3 4.6 27 97-123 59-85 (88)
65 2w83_C C-JUN-amino-terminal ki 24.2 75 0.0026 24.8 3.8 52 73-124 13-71 (77)
66 3he5_A Synzip1; heterodimeric 24.2 1.2E+02 0.0041 21.3 4.4 32 93-124 6-37 (49)
67 3m9b_A Proteasome-associated A 23.9 97 0.0033 28.9 5.2 41 74-114 59-99 (251)
68 2xdj_A Uncharacterized protein 22.0 1.1E+02 0.0036 23.9 4.3 34 92-125 22-55 (83)
69 2wt7_A Proto-oncogene protein 21.8 1.1E+02 0.0039 22.0 4.2 32 92-123 25-56 (63)
70 1am9_A Srebp-1A, protein (ster 21.7 84 0.0029 23.8 3.6 29 92-120 45-73 (82)
71 2zxx_A Geminin; coiled-coil, c 21.1 3E+02 0.01 21.4 8.7 49 64-114 17-65 (79)
72 3m91_A Proteasome-associated A 20.7 2.4E+02 0.0081 20.1 6.2 36 75-110 15-50 (51)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.75 E-value=3.6e-19 Score=135.97 Aligned_cols=71 Identities=54% Similarity=1.088 Sum_probs=34.3
Q ss_pred ccCCcccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCch
Q 020338 241 NQGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311 (327)
Q Consensus 241 n~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~E 311 (327)
...++||++|++|+..|.|++|++|+|+|+..+++.+..++.+++.+|++|...|.|++|.+|+|+|+..|
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 34579999999998799999999999999999998776678899999998888889999999999999765
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.30 E-value=8.8e-13 Score=106.88 Aligned_cols=52 Identities=31% Similarity=0.671 Sum_probs=46.9
Q ss_pred CcccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCc
Q 020338 244 MFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALT 310 (327)
Q Consensus 244 k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~ 310 (327)
.+|+++|++|+ .|.|.+|++|+|+|+ +.+|++|+..|.|++|.+|+|.|...
T Consensus 10 ~~k~~lC~~f~-~G~C~~G~~C~f~H~--------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 10 PKKRELCKFYI-TGFCARAENCPYMHG--------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCCSBCTTTT-TTCCSCSTTCSSBSS--------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCccCcccc-cCcCCCCCCCCCCCC--------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 47999999995 899999999999998 56799997667999999999999965
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=99.94 Aligned_cols=61 Identities=30% Similarity=0.598 Sum_probs=51.8
Q ss_pred cCCcccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCchhh
Q 020338 242 QGMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQE 313 (327)
Q Consensus 242 ~~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elr 313 (327)
...+|+++|++|+ .|.|.+|+.|.|+|+.... ++.+|++|+..|.|. |++|+|.|...+..
T Consensus 5 ~~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 5 SSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------KMPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp CSCCTTSBCHHHH-TTCCSCTTSSSSBCSCCTT---------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CCCCcceeCHhHc-cCcCCCCCCCCCccccccC---------cCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 3468999999997 6999999999999987643 356899999966999 99999999986543
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.17 E-value=5e-12 Score=97.26 Aligned_cols=59 Identities=31% Similarity=0.604 Sum_probs=50.1
Q ss_pred CCcccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCchh
Q 020338 243 GMFKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQ 312 (327)
Q Consensus 243 ~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~El 312 (327)
...|+++|++|+ .|.|.+|+.|.|+|+.... ++.+|++|+++|.|.+ ++|+|.|..++.
T Consensus 12 ~~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 12 SGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp SCCCCSBCHHHH-TTCCCCGGGSSSBCSCCTT---------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCCcCeeCHHHh-cCCCCCCCCCCCccccccc---------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 458899999997 6999999999999986532 4678999999669999 999999997653
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.13 E-value=2.1e-11 Score=92.89 Aligned_cols=66 Identities=24% Similarity=0.570 Sum_probs=53.9
Q ss_pred CcccccCcccccCCCCCCCC-CCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCchhhh
Q 020338 244 MFKTELCNKWQETGACPYGD-HCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQER 314 (327)
Q Consensus 244 k~KTkLCr~f~~~G~C~yGD-~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrk 314 (327)
..|.++|++|+ .|.|.+|+ .|.|+|+..+... .....++.+|.+|++| .|.+| .|+|.|....++.
T Consensus 3 ~~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~--~~~~~~~~vC~~flkG-~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 3 TDRLEVCREYQ-RGNCNRGENDCRFAHPADSTMI--DTNDNTVTVCMDYIKG-RCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp -CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCC--BTTTTEEEBCHHHHTT-CCCCT-TCCSBCCCHHHHC
T ss_pred cccchhCHHHh-cCCCCCCCCCCCCccCcccccc--cccCCcceeccccCcC-CCCCC-CcCeeCCHHHHhc
Confidence 35788999996 89999999 5999999876532 1234578999999995 99999 9999999987763
No 6
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=8e-11 Score=95.63 Aligned_cols=68 Identities=25% Similarity=0.518 Sum_probs=55.9
Q ss_pred CCcccccCcccccCCCCCCCC-CCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCchhhhh
Q 020338 243 GMFKTELCNKWQETGACPYGD-HCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERF 315 (327)
Q Consensus 243 ~k~KTkLCr~f~~~G~C~yGD-~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrkl 315 (327)
...|.++|++|+ .|.|.+|+ .|+|+|+..+.... ....++.+|.+|++| .|.+| .|+|.|....++..
T Consensus 16 ~~~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~~--~~~~~~~vC~~flkG-~C~r~-~C~y~H~~~~l~~~ 84 (98)
T 2e5s_A 16 RTDKLEVCREFQ-RGNCARGETDCRFAHPADSTMID--TSDNTVTVCMDYIKG-RCMRE-KCKYFHPPAHLQAK 84 (98)
T ss_dssp CSSEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSCC--TTTCEEEBCHHHHHT-CCCCT-TCCSBCCCHHHHHH
T ss_pred ChhhhhhhHHHh-cCcCCCCCCCCCCcCCchhcccc--ccCCccccchhhccC-CCCCC-CcCccCChHHHHHH
Confidence 357889999997 69999999 79999998765421 223578899999996 99999 99999999887653
No 7
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.83 E-value=1.5e-09 Score=85.93 Aligned_cols=66 Identities=24% Similarity=0.534 Sum_probs=54.2
Q ss_pred cCCcccccCcccccCCCCCCCC-CCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCchhhh
Q 020338 242 QGMFKTELCNKWQETGACPYGD-HCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQER 314 (327)
Q Consensus 242 ~~k~KTkLCr~f~~~G~C~yGD-~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrk 314 (327)
+.+.+..+|+.|+ .|.|..|| .|+|+|....+.. ...+..+|.+|++| .|..+ .|+|.|+...+..
T Consensus 4 ~~~~~~~VCr~Fl-rG~C~r~d~~C~f~H~~~~~~~----~~~~~~vC~dflkG-~C~r~-~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 4 TKWLTLEVCREFQ-RGTCSRPDTECKFAHPSKSCQV----ENGRVIACFDSLKG-RCSRE-NCKYLHPPPHLKT 70 (83)
T ss_dssp CGGGEEEBCTTGG-GTCCCSCTTTCSSBCCCTTCCE----ETTEEECCHHHHTT-CCCCS-SCSSCCCCHHHHH
T ss_pred cccccchhcHHHh-cCCCCCCCCCCCCcCCCccccc----cCCceeehhHhhhc-cccCC-CcceeCChHHHHH
Confidence 4568889999998 59999997 9999998765431 12357899999996 89998 9999999987764
No 8
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.59 E-value=1.9e-08 Score=80.66 Aligned_cols=67 Identities=25% Similarity=0.556 Sum_probs=54.0
Q ss_pred ccCCcccccCcccccCCCCCCCC-CCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCchhhh
Q 020338 241 NQGMFKTELCNKWQETGACPYGD-HCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQER 314 (327)
Q Consensus 241 n~~k~KTkLCr~f~~~G~C~yGD-~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrk 314 (327)
...+.+..+|+.|+ .|.|..|+ .|+|+|....... ...+..+|.+|++| .|..+ .|+|.|....++.
T Consensus 11 ~~~~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~v----~~~~~~vC~dflkG-~C~r~-~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 11 DTKWLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQV----ENGRVIACFDSLKG-RCSRE-NCKYLHPPTHLKT 78 (89)
T ss_dssp SCSSSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSCC----BTTBEEBCHHHHHT-CCCCT-TCCSBCCCHHHHH
T ss_pred CCCcchhhhchHHh-cCCCCCCCCCCCCcCCCccccc----cCCceeeehhhhhC-cCCCC-CcceecCHHHHHH
Confidence 34467788999997 69999998 9999998775421 12357899999996 99998 9999999887654
No 9
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=8.3e-08 Score=74.10 Aligned_cols=46 Identities=30% Similarity=0.639 Sum_probs=34.1
Q ss_pred cccccCcccccCCCCCCCCCCCccccCccccccc-ccCCccccccccc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVI-RHPRYKTEVCRMV 291 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~-~hp~yKTk~Ck~F 291 (327)
.|++||++| ..|.|+||++|+|||+.+||+... +....++++|+..
T Consensus 18 ~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar 64 (69)
T 2d9m_A 18 GYFSICDRY-MNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS 64 (69)
T ss_dssp SCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCC
T ss_pred CCcccCccc-CcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHh
Confidence 466999999 589999999999999999998532 1223455666543
No 10
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=7e-07 Score=68.94 Aligned_cols=35 Identities=26% Similarity=0.632 Sum_probs=29.7
Q ss_pred cCCccccccccccCccccCCCCCCCCCCCCchhhhh
Q 020338 280 HPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERF 315 (327)
Q Consensus 280 hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrkl 315 (327)
.|..+..+|+.|.. |.|+||++|+|+|+..|++.+
T Consensus 15 ~P~~k~~LC~~~~~-G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 15 FPTGYFSICDRYMN-GTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CCCSCCSBCHHHHH-SCCSSCSSCSSBSSHHHHHHH
T ss_pred CCCCCcccCcccCc-CCCCCCCccCCcCCHHHHhhH
Confidence 34557799999965 599999999999999999864
No 11
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.05 E-value=2.3e-06 Score=64.74 Aligned_cols=36 Identities=42% Similarity=0.849 Sum_probs=31.8
Q ss_pred cCCccccccccccCccccCCCCCCCCCCCCchhhhh
Q 020338 280 HPRYKTEVCRMVLAGDVCPYGHRCHFRHALTEQERF 315 (327)
Q Consensus 280 hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~Elrkl 315 (327)
.+.|++.+|++|...|.|++|++|+|+|+..+++..
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~ 42 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 42 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc
Confidence 467899999999877799999999999999988753
No 12
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=0.00014 Score=55.95 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=32.9
Q ss_pred cccccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAG 294 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~g 294 (327)
.++.+|++|+..|.|. |+.|.|.|...+ .++.+|++|.+|
T Consensus 36 ~~~~~C~~f~~~G~C~-~~~C~f~H~~~~---------~~~~~C~~f~~g 75 (77)
T 2d9n_A 36 TKMPECYFYSKFGECS-NKECPFLHIDPE---------SKIKDCPWSGPS 75 (77)
T ss_dssp TTSCBCHHHHHTCCCC-CSSCSSBCCCTT---------SSCSSSSCCTTT
T ss_pred CcCCCCcccCCCCccC-CCCeeccCCCcc---------ccCCCCcccccC
Confidence 3567899998559999 999999997543 357899999986
No 13
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.99 E-value=0.00038 Score=56.12 Aligned_cols=25 Identities=24% Similarity=0.748 Sum_probs=22.9
Q ss_pred ccccccccccCccccCCCCCCCCCCC
Q 020338 283 YKTEVCRMVLAGDVCPYGHRCHFRHA 308 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~rCRFaH~ 308 (327)
+++.+|++|.. |.|.+|++|+|+|+
T Consensus 11 ~k~~lC~~f~~-G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYIT-GFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred CCCccCccccc-CcCCCCCCCCCCCC
Confidence 58999999976 59999999999998
No 14
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.37 E-value=0.0016 Score=60.29 Aligned_cols=27 Identities=26% Similarity=0.694 Sum_probs=20.7
Q ss_pred ccccCcccccCCCCCC----CCCCCccccCcc
Q 020338 246 KTELCNKWQETGACPY----GDHCQFAHGIEE 273 (327)
Q Consensus 246 KTkLCr~f~~~G~C~y----GD~C~FAHd~~E 273 (327)
.--+|++|+ -|.|++ +..|+|+|++..
T Consensus 88 ~LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s 118 (229)
T 3u9g_A 88 SLHLCKLNL-LGRCHYAQSQRNLCKYSHDVLS 118 (229)
T ss_dssp SBCCCHHHH-TTCCGGGTCCSSCCSSCSCTTC
T ss_pred ceeechhhh-cCcCCcccCCCCCcccccccCc
Confidence 345899997 699943 467999999864
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.34 E-value=0.00077 Score=51.48 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=24.7
Q ss_pred ccccccccccCccccCCCCCCCCCCCCch
Q 020338 283 YKTEVCRMVLAGDVCPYGHRCHFRHALTE 311 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~E 311 (327)
.++.+|++|++ |.|.+|+.|+|+|....
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCT
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCcccccc
Confidence 57899999999 59999999999999653
No 16
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.17 E-value=0.0012 Score=47.99 Aligned_cols=28 Identities=32% Similarity=0.839 Sum_probs=25.6
Q ss_pred cccccCcccccCCCCCCCCCCCccccCc
Q 020338 245 FKTELCNKWQETGACPYGDHCQFAHGIE 272 (327)
Q Consensus 245 ~KTkLCr~f~~~G~C~yGD~C~FAHd~~ 272 (327)
.++.+|..|...|-|++|.+|.+.|+++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 6889999998899999999999999876
No 17
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.16 E-value=0.0011 Score=48.34 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=25.7
Q ss_pred ccccccccccCccccCCCCCCCCCCCCc
Q 020338 283 YKTEVCRMVLAGDVCPYGHRCHFRHALT 310 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~ 310 (327)
.++.+|..|...|+|++|.+|.|.|+..
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 5789999999999999999999999863
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=95.42 E-value=0.01 Score=54.91 Aligned_cols=51 Identities=25% Similarity=0.673 Sum_probs=42.4
Q ss_pred ccCCcccccCcccccC----CCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCch
Q 020338 241 NQGMFKTELCNKWQET----GACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALTE 311 (327)
Q Consensus 241 n~~k~KTkLCr~f~~~----G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~E 311 (327)
|..+.=.++|.+| +. |.|.+++.|...| +|++|+.| .|+| ..|.-.|...+
T Consensus 145 nDp~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH-----------------IC~~Fl~G-~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 145 SDPFFLPEICKSY-KGEGRKQTCGQPQPCERLH-----------------ICEHFTRG-NCSY-LNCLRSHNLMD 199 (229)
T ss_dssp TCGGGSCCBCTTC-CCSSSCCSCSSSSCCCSBC-----------------SCHHHHTT-CCCC-SSCSSCCCTTS
T ss_pred CCCccCchHHHHh-CCCCCCCcCCCCCCCccee-----------------ccchhhcC-CcCC-CCccCccCccC
Confidence 4445668999999 53 6899999999777 69999997 8999 89999999754
No 19
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.32 E-value=0.004 Score=46.93 Aligned_cols=31 Identities=19% Similarity=0.513 Sum_probs=26.8
Q ss_pred CCcccccCcccccCCCCCCCCCCCccccCcccc
Q 020338 243 GMFKTELCNKWQETGACPYGDHCQFAHGIEELR 275 (327)
Q Consensus 243 ~k~KTkLCr~f~~~G~C~yGD~C~FAHd~~Elr 275 (327)
...++.+|.+|+ .|.|.+| .|.|.|....|+
T Consensus 38 ~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 38 NDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp TTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred cCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence 457899999997 6999999 999999877664
No 20
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=94.54 E-value=0.069 Score=43.84 Aligned_cols=44 Identities=27% Similarity=0.251 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhHHH--------------HHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020338 71 RQQQQQQHQDMINRHNL--------------CLTRLREAAREAEALRQENDSLRTVNR 114 (327)
Q Consensus 71 ~~~~~~q~q~~~~r~~l--------------cl~rl~~~~~e~~~lr~en~~lr~~n~ 114 (327)
.|.||++|=+|-.+|+. +-.++++...|++.||.||..|+..|.
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578888888766654 236889999999999999999999987
No 21
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.42 E-value=0.015 Score=45.62 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=23.9
Q ss_pred ccccccccccCccccCCCC-CCCCCCCCch
Q 020338 283 YKTEVCRMVLAGDVCPYGH-RCHFRHALTE 311 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~-rCRFaH~~~E 311 (327)
.+..+|+.|++ |.|..|+ .|+|+|....
T Consensus 7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 7 LTLEVCREFQR-GTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp GEEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred ccchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence 35679999999 5999997 9999999753
No 22
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.36 E-value=0.005 Score=49.70 Aligned_cols=29 Identities=38% Similarity=0.723 Sum_probs=25.2
Q ss_pred CccccccccccCccccCCCC-CCCCCCCCch
Q 020338 282 RYKTEVCRMVLAGDVCPYGH-RCHFRHALTE 311 (327)
Q Consensus 282 ~yKTk~Ck~Fl~gG~CpyG~-rCRFaH~~~E 311 (327)
..+..+|++|++| .|..|+ .|+|+|....
T Consensus 17 ~~k~~VCr~FlrG-~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 17 TDKLEVCREFQRG-NCARGETDCRFAHPADS 46 (98)
T ss_dssp SSEEEBCSHHHHT-CCSSHHHHCSSBCCSSC
T ss_pred hhhhhhhHHHhcC-cCCCCCCCCCCcCCchh
Confidence 4578899999995 999999 7999999864
No 23
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=92.86 E-value=0.028 Score=44.82 Aligned_cols=27 Identities=33% Similarity=0.736 Sum_probs=23.6
Q ss_pred cccccccccCccccCCCC-CCCCCCCCch
Q 020338 284 KTEVCRMVLAGDVCPYGH-RCHFRHALTE 311 (327)
Q Consensus 284 KTk~Ck~Fl~gG~CpyG~-rCRFaH~~~E 311 (327)
+..+|+.|++| .|..|+ .|+|+|....
T Consensus 16 ~~~VCrdFlrG-~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQRG-TCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHHT-CCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhcC-CCCCCCCCCCCcCCCcc
Confidence 46799999995 999998 9999999764
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.97 E-value=0.16 Score=36.97 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 96 AREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 96 ~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
..|+++||+||.+||..+.+|..++.-|-
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999888774
No 25
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=90.10 E-value=0.046 Score=42.99 Aligned_cols=21 Identities=24% Similarity=0.600 Sum_probs=15.2
Q ss_pred cccCcccccCCCCCCCCCCCccccC
Q 020338 247 TELCNKWQETGACPYGDHCQFAHGI 271 (327)
Q Consensus 247 TkLCr~f~~~G~C~yGD~C~FAHd~ 271 (327)
.+.|++|. .|.. +.|.|.|..
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHAR 29 (80)
Confidence 45687775 6887 788888854
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.64 E-value=0.079 Score=48.64 Aligned_cols=26 Identities=27% Similarity=0.680 Sum_probs=22.2
Q ss_pred ccccCcccccCCCCCCCCCCCccccCc
Q 020338 246 KTELCNKWQETGACPYGDHCQFAHGIE 272 (327)
Q Consensus 246 KTkLCr~f~~~G~C~yGD~C~FAHd~~ 272 (327)
...+|.+|. .|.|.+|+.|.|.|...
T Consensus 69 ~~~~C~ffa-kG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 69 QLFFCLFFA-KGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CCSBCHHHH-TTCCSCGGGCSSBBSCC
T ss_pred CCeEcCccc-cCCCCCCCCCCccCCCC
Confidence 355999996 79999999999999753
No 27
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.64 E-value=0.067 Score=49.09 Aligned_cols=27 Identities=22% Similarity=0.696 Sum_probs=23.4
Q ss_pred ccccccccCccccCCCCCCCCCCCCchh
Q 020338 285 TEVCRMVLAGDVCPYGHRCHFRHALTEQ 312 (327)
Q Consensus 285 Tk~Ck~Fl~gG~CpyG~rCRFaH~~~El 312 (327)
..+|.||.+| .|++|..|.|.|..+..
T Consensus 70 ~~~C~ffakG-~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAKG-MCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHTT-CCSCGGGCSSBBSCCCH
T ss_pred CeEcCccccC-CCCCCCCCCccCCCCCc
Confidence 4599999994 99999999999997653
No 28
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=79.43 E-value=1.2 Score=32.50 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHV 120 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l 120 (327)
|.+.+.+.++|..||.+|+..|..|..+|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55668889999999999999998887654
No 29
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=79.26 E-value=0.44 Score=43.80 Aligned_cols=26 Identities=31% Similarity=0.778 Sum_probs=0.0
Q ss_pred ccccccccccCccccCCCCCCCCCCCCch
Q 020338 283 YKTEVCRMVLAGDVCPYGHRCHFRHALTE 311 (327)
Q Consensus 283 yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~E 311 (327)
.+..+|++ |-.|.||.+|+|.|+...
T Consensus 190 ~~~~~~~~---~~~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 190 HRKQPCPY---GRKCTYGIKCRFFHPERP 215 (223)
T ss_dssp -----------------------------
T ss_pred cCCCCCCC---CcccccCCcceecCCccC
Confidence 35678999 456999999999998643
No 30
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=76.38 E-value=0.89 Score=34.59 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHh
Q 020338 94 EAAREAEALRQENDSLRTVNRELNK 118 (327)
Q Consensus 94 ~~~~e~~~lr~en~~lr~~n~~l~~ 118 (327)
+..+|++.|+.||.+|+.+|..|.+
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~~~Lkk 87 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRARTRHPAE 87 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCCG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999998885544
No 31
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=76.11 E-value=0.66 Score=36.40 Aligned_cols=42 Identities=33% Similarity=0.681 Sum_probs=29.8
Q ss_pred ccCcccccCCCCCCCCCCCccccCcccccccccCCccccccccccCccccCCCCCCCCCCCCc
Q 020338 248 ELCNKWQETGACPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDVCPYGHRCHFRHALT 310 (327)
Q Consensus 248 kLCr~f~~~G~C~yGD~C~FAHd~~Elr~~~~hp~yKTk~Ck~Fl~gG~CpyG~rCRFaH~~~ 310 (327)
.+|+++. .|.. ..|.|.|.. ...|+|+. .|.. ..|.|.|...
T Consensus 32 ~~Cr~g~---~C~~-~~C~f~HP~-------------~~~Crf~~---~C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 32 IMCREGA---NCTR-IDCLFGHPI-------------NEDCRFGV---NCKN-IYCLFRHPPG 73 (80)
Confidence 4677663 6876 569999941 35687753 4887 7899999754
No 32
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=71.03 E-value=6 Score=28.56 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKH 119 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~ 119 (327)
+.+.-.+++.|..||..|+..+..|...
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888888888777766554
No 33
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.32 E-value=7.6 Score=30.76 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 93 REAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 93 ~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.+...+++.|..||..|++.-..|.+.+..|-
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999988888764
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.02 E-value=30 Score=27.18 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=34.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 75 QQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 75 ~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.++..++-....-+-.-..++..+.++|++||..|+..=.....||.-|+
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666677788888888877777777776554
No 35
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.17 E-value=10 Score=29.39 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 93 REAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 93 ~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.+...+++.|..||..|+..-..|.+.|..|-
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788889999999998888888888774
No 36
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.77 E-value=13 Score=27.34 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
..+.-.+++.|..||.+|+..-..|.+.+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777777777666
No 37
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.00 E-value=8.9 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHhH
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRELNKH 119 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~l~~~ 119 (327)
.|+.+.-.+++.|..||.+|+.....|...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777888888777766655443
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.42 E-value=8.4 Score=27.76 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhHHH
Q 020338 96 AREAEALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 96 ~~e~~~lr~en~~lr~~n~~l~~~l~ 121 (327)
-.|.+.||.++.+|...|.+|..+|.
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777788888888888888877764
No 39
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=54.30 E-value=30 Score=27.54 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=35.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 81 MINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 81 ~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
+.--|--.++-.-|.+.--+.||-||..|-+.|+.|-+.+.+--
T Consensus 31 lr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~t~ 74 (97)
T 1no4_A 31 LRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTE 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhccch
Confidence 33446666777778888889999999999999999988887763
No 40
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=53.95 E-value=21 Score=29.98 Aligned_cols=20 Identities=45% Similarity=0.695 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 020338 90 TRLREAAREAEALRQENDSL 109 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~l 109 (327)
-.|+|+..|++-||+||..|
T Consensus 85 q~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 85 HKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhh
Confidence 46788888888777777544
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.59 E-value=35 Score=24.52 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHHHhhhhhhhhhhhhHHhHHH
Q 020338 98 EAEALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 98 e~~~lr~en~~lr~~n~~l~~~l~ 121 (327)
+++.|-.||.+|+..-..|...+.
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 42
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.98 E-value=12 Score=30.51 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=12.8
Q ss_pred HHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 98 EAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 98 e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
++..||+|...|+.+|..|.+++..|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555444555444
No 43
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=51.50 E-value=15 Score=26.83 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 95 AAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 95 ~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
....+|+||.||.-||.+=.|=-.+|+-|
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 45678999999999998877777777776
No 44
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.41 E-value=38 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHhHHHH
Q 020338 94 EAAREAEALRQENDSLRTVNRELNKHVSL 122 (327)
Q Consensus 94 ~~~~e~~~lr~en~~lr~~n~~l~~~l~l 122 (327)
+.-.+++.|..||.+|+..-..|...+.-
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444444433
No 45
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=49.16 E-value=8.1 Score=35.35 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=8.1
Q ss_pred HHHHhhhhhhhhhhhhHHhHHH
Q 020338 100 EALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 100 ~~lr~en~~lr~~n~~l~~~l~ 121 (327)
..|+.||.+||..|.+|...+.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLES 43 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 46
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.69 E-value=15 Score=29.96 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHH
Q 020338 91 RLREAAREAEALRQENDSLRTVNRELNKHVSL 122 (327)
Q Consensus 91 rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~l 122 (327)
.+-....|++.|++||.+||-.+..|--+|.-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999987777644
No 47
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.05 E-value=22 Score=26.92 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+...-.+...|..|..+|+..|..|..+|.-|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566667777777777777777655
No 48
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=43.26 E-value=5 Score=36.79 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=0.0
Q ss_pred ccccCcccccCCCCCCCCCCCccccCcc
Q 020338 246 KTELCNKWQETGACPYGDHCQFAHGIEE 273 (327)
Q Consensus 246 KTkLCr~f~~~G~C~yGD~C~FAHd~~E 273 (327)
+..+|++- ..|.||.+|.|-|.+..
T Consensus 191 ~~~~~~~~---~~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYG---RKCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCC---cccccCCcceecCCccC
Confidence 57789853 47999999999997543
No 49
>1qqp_4 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_4* 2wzr_4 1fod_4 1fmd_4 1zba_4* 1zbe_4
Probab=41.99 E-value=12 Score=29.44 Aligned_cols=45 Identities=27% Similarity=0.168 Sum_probs=23.1
Q ss_pred CcccccccccCCCCCCcee---------eeCCCCChhhhhhhHHHhhhhccCCC
Q 020338 1 MQQMQNDGVSANPYSNHGV---------ASSKSQDDENADAFASLYSSLVMAQP 45 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~f~sly~~~~~~~~ 45 (327)
|+|.||-|--+.+.+-+.+ .|+...+..+.+-|.+|-+|-|+..-
T Consensus 27 ~nqYqnSID~s~g~~~~~~g~~~~~t~~sst~~~~~~n~~wFs~L~ssaf~~l~ 80 (85)
T 1qqp_4 27 MQQYQNSMDTQLGNDAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLF 80 (85)
T ss_dssp CHHHHSCCCCCCCCC-------------------------HHHHHHHTCBCSCS
T ss_pred hhhhhcccccccCCcccccCccCCcccccccccccccCchHHHHHHHHHHhhhh
Confidence 6788888877777666655 45556678888999999998887643
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.42 E-value=76 Score=23.98 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHhHHH
Q 020338 93 REAAREAEALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 93 ~~~~~e~~~lr~en~~lr~~n~~l~~~l~ 121 (327)
.+.-.+++.|..+|..|..+|..|...|.
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.99 E-value=95 Score=22.58 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 020338 71 RQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELN 117 (327)
Q Consensus 71 ~~~~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~ 117 (327)
||+--...++|..+ +.+...|-+.|+.+...|+.++.-|.
T Consensus 18 R~KKk~~~~~le~~-------~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 18 RQKKRAEQEALTGE-------CKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444554433 34455555555555555555555443
No 52
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=36.89 E-value=73 Score=28.60 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhhh
Q 020338 79 QDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIKS 126 (327)
Q Consensus 79 q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~~ 126 (327)
|-+.+=++-|+.-..++-.+++.|..||.+|...+.+|+..|.-++.+
T Consensus 121 e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~ 168 (213)
T 1ik9_A 121 EVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSA 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777887777778888999999999999999998888887763
No 53
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.29 E-value=36 Score=24.59 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020338 72 QQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLR 110 (327)
Q Consensus 72 ~~~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr 110 (327)
|+-...-++|-++.+.--..-.+...|++.|+.|+..|+
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333334444444444444443
No 54
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.96 E-value=37 Score=25.98 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhHHH
Q 020338 96 AREAEALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 96 ~~e~~~lr~en~~lr~~n~~l~~~l~ 121 (327)
-.+...|..|+..||..|..|.++|.
T Consensus 53 ~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 53 EDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666666666665
No 55
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.84 E-value=94 Score=25.56 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhh
Q 020338 74 QQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLIK 125 (327)
Q Consensus 74 ~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~ 125 (327)
+-.++.++-..|+- -..++...+..|..|...||..|..|.++|-=|=+
T Consensus 15 L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 15 LKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777765 34567777888999999999999988888876644
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.54 E-value=49 Score=25.03 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=11.4
Q ss_pred HHHHhhhhhhhhhhhhHHhHHH
Q 020338 100 EALRQENDSLRTVNRELNKHVS 121 (327)
Q Consensus 100 ~~lr~en~~lr~~n~~l~~~l~ 121 (327)
+.|..||..||..+..|...|.
T Consensus 46 ~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 46 SSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.38 E-value=57 Score=23.35 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 020338 71 RQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSL 109 (327)
Q Consensus 71 ~~~~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~l 109 (327)
||+-...-++|-++++..=..-.+...|++.|+.|+..|
T Consensus 17 R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 17 RQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344344444555554443333333444444444444444
No 58
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.42 E-value=1.4e+02 Score=25.09 Aligned_cols=43 Identities=7% Similarity=-0.034 Sum_probs=23.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 020338 75 QQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNRELN 117 (327)
Q Consensus 75 ~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~ 117 (327)
+.+|-++-..++.-...|.+.-.|+.+|.+|+..++..+..+.
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556665556666556666555555554444443333
No 59
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=30.82 E-value=71 Score=28.43 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHH
Q 020338 85 HNLCLTRLREAAREAEALRQENDSLRTVNRELNKHV 120 (327)
Q Consensus 85 ~~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l 120 (327)
++-||.+..+...+.+-|.+||.+|+..=.+..++|
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346888889999999999999999988777766665
No 60
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.73 E-value=51 Score=21.52 Aligned_cols=13 Identities=46% Similarity=0.588 Sum_probs=5.5
Q ss_pred HHHHHHhhhhhhh
Q 020338 98 EAEALRQENDSLR 110 (327)
Q Consensus 98 e~~~lr~en~~lr 110 (327)
|+++|.+|.+.|.
T Consensus 3 eiaalkqeiaalk 15 (33)
T 4dzn_A 3 EIAALKQEIAALK 15 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444443
No 61
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.54 E-value=63 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh
Q 020338 90 TRLREAAREAEALRQENDSLRTVNRE 115 (327)
Q Consensus 90 ~rl~~~~~e~~~lr~en~~lr~~n~~ 115 (327)
.++..|.+.++.|+.|..+|+-.|..
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666444444444444444443
No 62
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=30.38 E-value=28 Score=27.83 Aligned_cols=10 Identities=50% Similarity=1.211 Sum_probs=0.0
Q ss_pred ccCCCCCCCC
Q 020338 296 VCPYGHRCHF 305 (327)
Q Consensus 296 ~CpyG~rCRF 305 (327)
.|+||..|--
T Consensus 58 ~C~YG~~CYR 67 (89)
T 2kqb_A 58 ECPYGPSCYR 67 (89)
T ss_dssp ----------
T ss_pred CCCCchhhhc
Confidence 6999999953
No 63
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=29.94 E-value=0.76 Score=35.57 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 97 REAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 97 ~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.|++.|++||.+|+.+|.-|.+-.+++.
T Consensus 71 ~e~~~L~~e~~~L~~e~~iLKka~~~~~ 98 (108)
T 2rn7_A 71 QRLKEPERENRELRRSNDILRLASAYFA 98 (108)
T ss_dssp SCCCCCCSCCCCCSCCCCCCCCCCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566788888888888876666655553
No 64
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.88 E-value=83 Score=24.29 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 97 REAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 97 ~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
.+...|..|...|+..|..|.++|.-|
T Consensus 59 ~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 59 AEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555666666666676655
No 65
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.19 E-value=75 Score=24.80 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 73 QQQQQHQDMINRH-------NLCLTRLREAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 73 ~~~~q~q~~~~r~-------~lcl~rl~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
.+|.|+.+|.+-. ++=+.|+-+.+.|-++|+.|+..++.+=..+..++.-+-
T Consensus 13 nLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 13 NLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888874332 345789999999999999999999999887777776553
No 66
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.15 E-value=1.2e+02 Score=21.28 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHh
Q 020338 93 REAAREAEALRQENDSLRTVNRELNKHVSLLI 124 (327)
Q Consensus 93 ~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~ 124 (327)
+..-.|++.|-.||.-|..-|.+-...|+.|-
T Consensus 6 aqlenevaslenenetlkkknlhkkdliayle 37 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHH
Confidence 45568999999999999999987777777663
No 67
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.92 E-value=97 Score=28.87 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020338 74 QQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNR 114 (327)
Q Consensus 74 ~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~ 114 (327)
+..|.+.+..|.+-+-.-|.++-+|+..|+.|+..|+.-=.
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35666777777776667777777777777777776665433
No 68
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.97 E-value=1.1e+02 Score=23.85 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHhh
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHVSLLIK 125 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll~~ 125 (327)
+.+...-++.|+.|.++||-.+.++...|.-+.+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999988865
No 69
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.82 E-value=1.1e+02 Score=22.00 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHVSLL 123 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l~ll 123 (327)
+.+...+++.|-.||.+|+..=..|...+.-|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666655554444444443
No 70
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.72 E-value=84 Score=23.82 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHhHH
Q 020338 92 LREAAREAEALRQENDSLRTVNRELNKHV 120 (327)
Q Consensus 92 l~~~~~e~~~lr~en~~lr~~n~~l~~~l 120 (327)
|.+|++=+..|+.++..|...|..|...+
T Consensus 45 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 45 LRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555444433
No 71
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.10 E-value=3e+02 Score=21.42 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 020338 64 YYSRLLIRQQQQQQHQDMINRHNLCLTRLREAAREAEALRQENDSLRTVNR 114 (327)
Q Consensus 64 ~~~r~~~~~~~~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr~~n~ 114 (327)
|+.-++.+.|.+| +.-|.+.-.|+- .+-.--.|++.|+.||..|...-.
T Consensus 17 YWk~lAE~RR~AL-~eaL~EN~~Lh~-~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 17 YWKEVAEQRRKAL-YEALKENEKLHK-EIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444443 233333333332 333334566677777777755444
No 72
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.70 E-value=2.4e+02 Score=20.13 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020338 75 QQQHQDMINRHNLCLTRLREAAREAEALRQENDSLR 110 (327)
Q Consensus 75 ~~q~q~~~~r~~lcl~rl~~~~~e~~~lr~en~~lr 110 (327)
..+-+.|..|.+-=-.-|.+|-+|++.|+.|-+.|.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567788888777888999999999998887763
Done!