BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020339
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YYC|A Chain A, Solution Structure Of A Putative Late Embryogenesis
Abundant (Lea) Protein At2g46140.1
Length = 174
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 168 LDSFEGWIAECLND---PEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNVVQ 224
LD +G+ AE L + PE T D + D +S + S+P C + +
Sbjct: 28 LDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYIL 87
Query: 225 QQVTRT--------PRNVVFKGRKSLLRTPTKLASSVA 254
+ TRT P ++V G ++L P K+A S+A
Sbjct: 88 KSATRTIASGTIPDPGSLVGSGT-TVLDVPVKVAYSIA 124
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 250 ASSVAYPFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPT----SAFSGKPV 305
S ++P ++++ G G +L DI +R+H +T N D + + AF
Sbjct: 93 VSLTSHPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF 152
Query: 306 VGKTKIHTEGG 316
KT + TE G
Sbjct: 153 GIKTMLETEEG 163
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 256 PFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPT----SAFSGKPVVGKTKI 311
P ++++ G G +L DI +R+H +T N D + + AF KT +
Sbjct: 37 PVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML 96
Query: 312 HTEGG 316
TE G
Sbjct: 97 ETEEG 101
>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin
Mdia1; The DidDAD COMPLEX
Length = 233
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 256 PFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPT----SAFSGKPVVGKTKI 311
P ++++ G G +L DI +R+H +T N D + + AF KT +
Sbjct: 33 PVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML 92
Query: 312 HTEGG 316
TE G
Sbjct: 93 ETEEG 97
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 256 PFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPT----SAFSGKPVVGKTKI 311
P ++++ G G +L DI +R+H +T N D + + AF KT +
Sbjct: 39 PVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML 98
Query: 312 HTEGG 316
TE G
Sbjct: 99 ETEEG 103
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 256 PFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPT----SAFSGKPVVGKTKI 311
P ++++ G G +L DI +R+H +T N D + + AF KT +
Sbjct: 99 PVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML 158
Query: 312 HTEGG 316
TE G
Sbjct: 159 ETEEG 163
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 256 PFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPT----SAFSGKPVVGKTKI 311
P ++++ G G +L DI +R+H +T N D + + AF KT +
Sbjct: 37 PVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML 96
Query: 312 HTEGG 316
TE G
Sbjct: 97 ETEEG 101
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 256 PFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPT----SAFSGKPVVGKTKI 311
P ++++ G G +L DI +R+H +T N D + + AF KT +
Sbjct: 33 PVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML 92
Query: 312 HTEGG 316
TE G
Sbjct: 93 ETEEG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,323,322
Number of Sequences: 62578
Number of extensions: 431835
Number of successful extensions: 608
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 10
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)