Query 020339
Match_columns 327
No_of_seqs 62 out of 64
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx8_H KREV interaction trappe 9.7 1.8E+02 0.0063 26.3 3.0 26 292-317 83-108 (203)
2 1wkj_A Nucleoside diphosphate 7.4 96 0.0033 25.7 0.1 24 256-280 4-27 (137)
3 2hur_A NDK, nucleoside diphosp 7.1 1E+02 0.0035 25.8 0.1 26 255-281 4-29 (142)
4 1nhk_R Nucleoside diphosphate 6.8 1.1E+02 0.0036 25.8 0.1 26 255-281 4-29 (144)
5 4hr2_A Nucleoside diphosphate 6.5 1.1E+02 0.0038 25.8 0.1 26 254-280 8-33 (145)
6 1psb_C NDR Ser/Thr kinase-like 6.4 2.2E+02 0.0075 17.2 1.4 15 93-112 9-23 (26)
7 2dxe_A Nucleoside diphosphate 6.4 1.2E+02 0.004 26.0 0.1 25 255-280 9-33 (160)
8 3evo_A NDP kinase, NDK, nucleo 6.2 1.2E+02 0.0041 25.6 0.1 26 253-279 6-31 (146)
9 3zwl_E Eukaryotic translation 5.9 1.2E+02 0.004 21.9 -0.1 9 106-114 14-22 (50)
10 3q8u_A Nucleoside diphosphate 5.7 1.3E+02 0.0046 25.6 0.1 24 256-280 4-27 (157)
No 1
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=9.69 E-value=1.8e+02 Score=26.31 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCcceeeeeeeeCCCc
Q 020339 292 PSAYPTSAFSGKPVVGKTKIHTEGGK 317 (327)
Q Consensus 292 p~~~~~~g~SGK~Vv~~tri~T~gg~ 317 (327)
|.++..-|+.||.||...++.-+|++
T Consensus 83 piSp~nqG~~gKRVV~mKkf~ldg~~ 108 (203)
T 4dx8_H 83 PISPANQGIRGKRVVLMKKFPLDGEK 108 (203)
T ss_dssp CC---CCCCCCSCCEEEEEEECCSSC
T ss_pred cCCCCCccccceeEEEeeecccccCC
Confidence 44566779999999999999998643
No 2
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=7.39 E-value=96 Score=25.71 Aligned_cols=24 Identities=29% Similarity=0.600 Sum_probs=17.1
Q ss_pred eeeeeccCCccCCcchHhhhhhhcC
Q 020339 256 PFAFIKPCGIHGDVTLNDINQRIHS 280 (327)
Q Consensus 256 PF~~vKP~g~~gd~TL~DIN~ri~~ 280 (327)
=|.+|||.++.-.. +-+|-+||..
T Consensus 4 Tl~iIKPdav~~~~-~g~Ii~~ie~ 27 (137)
T 1wkj_A 4 TFVMIKPDGVRRGL-VGEILARFER 27 (137)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred EEEEEChHHhhccc-HHHHHHHHHH
Confidence 48899999986554 4667766653
No 3
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=7.10 E-value=1e+02 Score=25.77 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=18.6
Q ss_pred eeeeeeccCCccCCcchHhhhhhhcCC
Q 020339 255 YPFAFIKPCGIHGDVTLNDINQRIHSP 281 (327)
Q Consensus 255 yPF~~vKP~g~~gd~TL~DIN~ri~~~ 281 (327)
.=|.+|||.++.-.. +-+|-+||...
T Consensus 4 rTl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (142)
T 2hur_A 4 RTFSIIKPNAVAKNV-IGNIFARFEAA 29 (142)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEEChHHHhccc-HHHHHHHHHHC
Confidence 348999999986554 45777777544
No 4
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=6.85 E-value=1.1e+02 Score=25.75 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=18.6
Q ss_pred eeeeeeccCCccCCcchHhhhhhhcCC
Q 020339 255 YPFAFIKPCGIHGDVTLNDINQRIHSP 281 (327)
Q Consensus 255 yPF~~vKP~g~~gd~TL~DIN~ri~~~ 281 (327)
.=|.+|||.++.-.. +-+|-+||...
T Consensus 4 rTl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (144)
T 1nhk_R 4 RTLSIIKPDGLEKGV-IGKIISRFEEK 29 (144)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEEChHHHhccc-HHHHHHHHHHC
Confidence 348999999986554 45777777544
No 5
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=6.55 E-value=1.1e+02 Score=25.81 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=17.8
Q ss_pred eeeeeeeccCCccCCcchHhhhhhhcC
Q 020339 254 AYPFAFIKPCGIHGDVTLNDINQRIHS 280 (327)
Q Consensus 254 ayPF~~vKP~g~~gd~TL~DIN~ri~~ 280 (327)
=.=|++|||.++.-.. +-+|-+||..
T Consensus 8 ErTl~iIKPDav~~~l-~g~Ii~rie~ 33 (145)
T 4hr2_A 8 ERTLSIIKPDAVAKNV-IGQIYSRFEN 33 (145)
T ss_dssp EEEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred HHeEEEEChHHhhcCC-HHHHHHHHHH
Confidence 3458999999876543 4567777643
No 6
>1psb_C NDR Ser/Thr kinase-like protein; helix-loop-helix, protein-peptide complex, metal binding protein; NMR {Bos taurus}
Probab=6.45 E-value=2.2e+02 Score=17.17 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=11.1
Q ss_pred CCCChhHHHhhhHHHhhhhc
Q 020339 93 MSKDPKEHRETYSQAKRRRM 112 (327)
Q Consensus 93 ~~ke~~el~E~s~~sKRRRM 112 (327)
..||++.+ |.||.||
T Consensus 9 ~~kEte~l-----Rl~R~Kl 23 (26)
T 1psb_C 9 ARKETEFL-----RLKRTRL 23 (26)
T ss_dssp CCTTHHHH-----HHHHHHH
T ss_pred HHHHHHHH-----HHhhccc
Confidence 56777776 8888876
No 7
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=6.36 E-value=1.2e+02 Score=25.98 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=17.9
Q ss_pred eeeeeeccCCccCCcchHhhhhhhcC
Q 020339 255 YPFAFIKPCGIHGDVTLNDINQRIHS 280 (327)
Q Consensus 255 yPF~~vKP~g~~gd~TL~DIN~ri~~ 280 (327)
.=|.+|||.++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~G~Ii~rie~ 33 (160)
T 2dxe_A 9 RTLVIIKPDAVVRGL-IGEIISRFEK 33 (160)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred eEEEEEChHHhhccc-HHHHHHHHHH
Confidence 458999999986554 4667677654
No 8
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=6.22 E-value=1.2e+02 Score=25.57 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=18.3
Q ss_pred eeeeeeeeccCCccCCcchHhhhhhhc
Q 020339 253 VAYPFAFIKPCGIHGDVTLNDINQRIH 279 (327)
Q Consensus 253 vayPF~~vKP~g~~gd~TL~DIN~ri~ 279 (327)
+=.=|++|||.++.... +-+|=+||.
T Consensus 6 ~e~Tl~iIKPdav~~~~-~g~Ii~~ie 31 (146)
T 3evo_A 6 LQRTLVLIKPDAFERSL-VAEIMGRIE 31 (146)
T ss_dssp CEEEEEEECHHHHHTTC-HHHHHHHHH
T ss_pred ceeEEEEEChHHHhccc-HHHHHHHHH
Confidence 44568999999987654 456666664
No 9
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=5.86 E-value=1.2e+02 Score=21.88 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=6.6
Q ss_pred HHhhhhccc
Q 020339 106 QAKRRRMLQ 114 (327)
Q Consensus 106 ~sKRRRMLq 114 (327)
..+|||||.
T Consensus 14 Ie~RRrlLe 22 (50)
T 3zwl_E 14 ILHQRELLK 22 (50)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 357888885
No 10
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=5.68 E-value=1.3e+02 Score=25.64 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=16.5
Q ss_pred eeeeeccCCccCCcchHhhhhhhcC
Q 020339 256 PFAFIKPCGIHGDVTLNDINQRIHS 280 (327)
Q Consensus 256 PF~~vKP~g~~gd~TL~DIN~ri~~ 280 (327)
=|++|||.++.-.. +-+|=+||..
T Consensus 4 Tl~iIKPDav~~~~-~G~Ii~~ie~ 27 (157)
T 3q8u_A 4 TFLMIKPDAVQRNL-IGEVISRIER 27 (157)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred EEEEEChHHhhcCC-HHHHHHHHHH
Confidence 38899999987543 4556666643
Done!