Query 020339
Match_columns 327
No_of_seqs 62 out of 64
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 15:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020339.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020339hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d5va_ a.4.5.14 (A:) Adipocyt 17.4 27 0.002 25.8 1.9 18 264-281 20-37 (94)
2 d2nqwa1 d.145.1.4 (A:4-90) Hyp 9.2 57 0.0042 22.7 1.4 26 256-281 2-29 (87)
3 d2cyua1 a.9.1.1 (A:2-40) E3-bi 8.9 64 0.0046 20.3 1.4 22 256-277 15-36 (39)
4 d2o3ga1 d.145.1.4 (A:180-255) 7.3 59 0.0043 22.2 0.7 17 265-281 5-21 (76)
5 d1w85i_ a.9.1.1 (I:) E3/E1 bin 7.2 86 0.0063 20.0 1.5 21 258-278 20-40 (42)
6 d2rk5a1 d.145.1.4 (A:5-88) Put 6.7 73 0.0053 21.8 1.0 17 265-281 10-26 (84)
7 d2p13a1 d.145.1.4 (A:431-515) 6.6 75 0.0055 22.0 1.0 17 265-281 15-31 (85)
8 d2axia1 a.42.1.1 (A:25-109) MD 6.1 58 0.0042 24.2 0.1 17 258-274 12-29 (85)
9 d2c6ya1 a.4.5.14 (A:1-98) Inte 6.0 98 0.0071 22.7 1.4 19 263-281 18-36 (98)
10 d1w7wa_ d.58.6.1 (A:) Nucleosi 6.0 59 0.0043 25.5 0.1 24 257-281 7-30 (151)
No 1
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.45 E-value=27 Score=25.84 Aligned_cols=18 Identities=33% Similarity=0.290 Sum_probs=14.9
Q ss_pred CccCCcchHhhhhhhcCC
Q 020339 264 GIHGDVTLNDINQRIHSP 281 (327)
Q Consensus 264 g~~gd~TL~DIN~ri~~~ 281 (327)
.-+|.+||+||.+.|...
T Consensus 20 sp~~~ltL~eIY~~i~~~ 37 (94)
T d1d5va_ 20 APEKKITLNGIYQFIMDR 37 (94)
T ss_dssp CSSSSBCHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHH
Confidence 457889999999999754
No 2
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=9.23 E-value=57 Score=22.69 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=19.8
Q ss_pred eeeeeccC--CccCCcchHhhhhhhcCC
Q 020339 256 PFAFIKPC--GIHGDVTLNDINQRIHSP 281 (327)
Q Consensus 256 PF~~vKP~--g~~gd~TL~DIN~ri~~~ 281 (327)
||..+-.+ -++|.++|.|+|+.+-..
T Consensus 2 p~~ki~d~~~~v~G~~~l~dl~~~l~~~ 29 (87)
T d2nqwa1 2 PFKVLGDGSYLFEGKTSLSDVRHYLDLP 29 (87)
T ss_dssp CEEECTTSCEEEETTCBHHHHHHHHTCC
T ss_pred CeEEECCCEEEEEEeCCHHHHHHHhCCC
Confidence 55556555 468999999999998654
No 3
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=8.93 E-value=64 Score=20.31 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.0
Q ss_pred eeeeeccCCccCCcchHhhhhh
Q 020339 256 PFAFIKPCGIHGDVTLNDINQR 277 (327)
Q Consensus 256 PF~~vKP~g~~gd~TL~DIN~r 277 (327)
-.+.|++.|..|-||-.||=+-
T Consensus 15 dl~~i~GtG~~GRI~k~Dv~~~ 36 (39)
T d2cyua1 15 DASAIKGTGVGGRLTREDVEKH 36 (39)
T ss_dssp CGGGSCCCSSSSCCCHHHHHHH
T ss_pred CHHHCcCCCCCCcEeHHHHHHH
Confidence 3457899999999999998543
No 4
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=7.30 E-value=59 Score=22.24 Aligned_cols=17 Identities=12% Similarity=0.497 Sum_probs=14.9
Q ss_pred ccCCcchHhhhhhhcCC
Q 020339 265 IHGDVTLNDINQRIHSP 281 (327)
Q Consensus 265 ~~gd~TL~DIN~ri~~~ 281 (327)
++|.++|.|+|+.+-.+
T Consensus 5 vdG~~~i~dl~~~l~~~ 21 (76)
T d2o3ga1 5 VEGALEYVELAPQLNLP 21 (76)
T ss_dssp EETTCBHHHHTTTTTCC
T ss_pred EEcCCCHHHHHHHHCcC
Confidence 68999999999998765
No 5
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.16 E-value=86 Score=20.03 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.6
Q ss_pred eeeccCCccCCcchHhhhhhh
Q 020339 258 AFIKPCGIHGDVTLNDINQRI 278 (327)
Q Consensus 258 ~~vKP~g~~gd~TL~DIN~ri 278 (327)
..|++.|.+|-||-.||-.-|
T Consensus 20 ~~i~GTG~~GRItk~DV~~~i 40 (42)
T d1w85i_ 20 RLVQGTGKNGRVLKEDIDAFL 40 (42)
T ss_dssp TTSCCCSGGGCCCHHHHHHHH
T ss_pred HHCccCCCCCcEeHHHHHHHh
Confidence 468999999999999996544
No 6
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=6.71 E-value=73 Score=21.82 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.9
Q ss_pred ccCCcchHhhhhhhcCC
Q 020339 265 IHGDVTLNDINQRIHSP 281 (327)
Q Consensus 265 ~~gd~TL~DIN~ri~~~ 281 (327)
++|.++|.|+|+.+-..
T Consensus 10 v~G~~~l~dl~~~l~~~ 26 (84)
T d2rk5a1 10 VLGTMTLNDFNEYFETD 26 (84)
T ss_dssp EETTSBHHHHHHHHTCC
T ss_pred EEeeeEHHHHHHHhCCC
Confidence 67999999999999664
No 7
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}
Probab=6.57 E-value=75 Score=21.99 Aligned_cols=17 Identities=6% Similarity=0.265 Sum_probs=14.7
Q ss_pred ccCCcchHhhhhhhcCC
Q 020339 265 IHGDVTLNDINQRIHSP 281 (327)
Q Consensus 265 ~~gd~TL~DIN~ri~~~ 281 (327)
++|.++|.|+|+.+-..
T Consensus 15 v~G~~~l~dl~~~l~~~ 31 (85)
T d2p13a1 15 MDGWISIRKASNLLEHD 31 (85)
T ss_dssp EETTSBHHHHHHHHTSC
T ss_pred EEecCCHHHHHHHHCCC
Confidence 68999999999998654
No 8
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.11 E-value=58 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=14.7
Q ss_pred eeeccCCccCCc-chHhh
Q 020339 258 AFIKPCGIHGDV-TLNDI 274 (327)
Q Consensus 258 ~~vKP~g~~gd~-TL~DI 274 (327)
.++|+.|+.|++ |+++|
T Consensus 12 ~~L~~~GA~~~~fT~kqV 29 (85)
T d2axia1 12 KLLKSVGAQKDTYTMKEV 29 (85)
T ss_dssp HHHHHTTCCCSCEEHHHH
T ss_pred HHHHHcCCCcceeeHHHH
Confidence 468899999997 99887
No 9
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.02 E-value=98 Score=22.70 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.4
Q ss_pred CCccCCcchHhhhhhhcCC
Q 020339 263 CGIHGDVTLNDINQRIHSP 281 (327)
Q Consensus 263 ~g~~gd~TL~DIN~ri~~~ 281 (327)
...+|.+||+||.+.|...
T Consensus 18 ~sp~~~ltL~eIy~~i~~~ 36 (98)
T d2c6ya1 18 MAPDKQLTLNGIYTHITKN 36 (98)
T ss_dssp TSTTSCEEHHHHHHHHHHH
T ss_pred hCCCCCccHHHHHHHHHHh
Confidence 3467889999999999754
No 10
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]}
Probab=5.98 E-value=59 Score=25.48 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=17.4
Q ss_pred eeeeccCCccCCcchHhhhhhhcCC
Q 020339 257 FAFIKPCGIHGDVTLNDINQRIHSP 281 (327)
Q Consensus 257 F~~vKP~g~~gd~TL~DIN~ri~~~ 281 (327)
|++|||+++.-.. +.+|-+||...
T Consensus 7 l~iIKPdav~~~~-~g~Ii~~i~~~ 30 (151)
T d1w7wa_ 7 FIAIKPDGVQRGL-ISEIISRFERK 30 (151)
T ss_dssp EEEECHHHHHTTC-HHHHHHHHHTT
T ss_pred EEEECchhhhcCC-HHHHHHHHHHC
Confidence 8899999887542 46677777554
Done!