BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020340
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 282 SSSIQIQVIKKPATVSA--TKVIAKSENKSEE-RTGLQSLCQNYDSDDE 327
SS+I+ VI ATVS T ++K+ S+ T + C NYDSD+E
Sbjct: 327 SSTIEKGVIFAKATVSVKVTASLSKAWTNSQSGTTAITYTCDNYDSDEE 375
>pdb|1CB0|A Chain A, Structure Of Human 5'-deoxy-5'-methylthioadenosine
Phosphorylase At 1.7 A Resolution
pdb|1CG6|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate At 1.7 A
Resolution
pdb|1K27|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase In Complex With A Transition State
Analogue
pdb|1SD1|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Formycin A
pdb|1SD2|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With 5'-Methylthiotubercidin
pdb|3OZC|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZE|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|C Chain C, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|D Chain D, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|E Chain E, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|F Chain F, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
Length = 283
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 26 PKNQQIKVRMMLPMSIRCNTCGNYI-YKGTKFNSRKEDAIGETYLGIQIFRFYF------ 78
PK +++ + + +RC++ G + +G +F+SR E + T+ G +
Sbjct: 146 PKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTW-GADVINMTTVPEVVL 204
Query: 79 --KCTKCSAELTIKTDPQNSDYIVESGASRNYEPWRAEDEAVDEEKKRRDAEEMGDAMKA 136
+ C A + + TD Y+ W+ +EAV ++ + +E + K+
Sbjct: 205 AKEAGICYASIAMATD---------------YDCWKEHEEAVSVDRVLKTLKENANKAKS 249
Query: 137 LENRTLDSKREMDILAALDEMKSM 160
L T+ + L +K+M
Sbjct: 250 LLLTTIPQIGSTEWSETLHNLKNM 273
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 90 KTDPQNSDYIVE-----SGASRNYEPWRAEDEAVDEEKKRRDAEEMGDAMK--ALENRTL 142
K + QNS +V SG+SR + PW D + + A D K AL N L
Sbjct: 67 KKEYQNSSILVSFENFGSGSSREHAPWALVDYGI----RAIIAPSFADIFKNNALGNGLL 122
Query: 143 DSKREMD-ILAALDEMKSMKSRHASVSV 169
+ D +L +DE+K + ++ +S+
Sbjct: 123 TIELAKDEVLEIVDELKKSQDKNIEISL 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,019,170
Number of Sequences: 62578
Number of extensions: 282377
Number of successful extensions: 525
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 3
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)