BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020340
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54WR5|CCD94_DICDI Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium
discoideum GN=ccdc94 PE=3 SV=1
Length = 324
Score = 240 bits (613), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 165/243 (67%), Gaps = 28/243 (11%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
MGERKV++KYYPPDFDPSK+ +I+ + KV MLPMSIRCNTCG YI +GTKFN++K
Sbjct: 1 MGERKVISKYYPPDFDPSKVAKIKVKRPTFTKVTTMLPMSIRCNTCGEYIGRGTKFNAKK 60
Query: 61 EDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRNYEPWRAEDEAVDE 120
E E YLGI+I+RF+ +C KC+AELTIKTDP+NS+Y+ ESGA+RNYEPW+ DE
Sbjct: 61 ETVQNEDYLGIKIYRFFLRCKKCAAELTIKTDPKNSEYVCESGATRNYEPWK----ETDE 116
Query: 121 EKKRR---DAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKSRHASVSVDAMLEALQ 177
EK R + EE DAM ALENRTL+SKREM++L AL+E+KS+ SR++ + + +LE
Sbjct: 117 EKSNRMTKEQEEEQDAMIALENRTLESKREMEMLDALEEIKSLNSRNSEIDTEQLLEYNL 176
Query: 178 STAPEKEKRLEEEDEALIRSIFQKPREV-------------------VRRISDEDLDDDG 218
+EK +EED+ L++SIF ++ ++RI E+ DDDG
Sbjct: 177 QKQELEEKLQDEEDDLLVKSIFNNKNKLELNQINDNNSINNNIDSNKIKRI--ENDDDDG 234
Query: 219 DLF 221
D F
Sbjct: 235 DKF 237
>sp|Q9D6J3|CCD94_MOUSE Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94
PE=1 SV=1
Length = 314
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 127/173 (73%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
M ERKVLNKYYPPDFDPSK+P+++ PK++Q VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1 MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60
Query: 61 EDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRNYEPWRAEDEAVDE 120
E E YLG+ IFRFY KCT+C AE+T KTDP+N+DY +E GA+RN++ + +E
Sbjct: 61 ETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKR 120
Query: 121 EKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKSRHASVSVDAML 173
+K R+ EE+ + MK LENRT DSK EM++L L E+K + R A V +AML
Sbjct: 121 VQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAML 173
>sp|Q9BW85|CCD94_HUMAN Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94
PE=1 SV=1
Length = 323
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 127/173 (73%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
M ERKVLNKYYPPDFDPSK+P+++ PK++Q VR+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1 MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60
Query: 61 EDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRNYEPWRAEDEAVDE 120
E E YLG+ IFRFY KCT+C AE+T KTDP+N+DY +E GA+RN++ + +E
Sbjct: 61 ETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKR 120
Query: 121 EKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKSRHASVSVDAML 173
+K R+ EE+ + MK LENRT DSK EM++L L E+K + R A V +AML
Sbjct: 121 VQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAML 173
>sp|Q9P7C5|CWF16_SCHPO Pre-mRNA-splicing factor cwf16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf16 PE=1 SV=2
Length = 270
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 145/229 (63%), Gaps = 19/229 (8%)
Query: 1 MGERKVLNKYYPPDFDPSKLP-----RIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTK 55
M ERKVLNKY PPD+DPS P + + P ++ VR+M P S+RC+TCG YIYKG K
Sbjct: 1 MSERKVLNKYIPPDYDPSIRPPKKKKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKK 60
Query: 56 FNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRNYEPW---R 112
FN+RKE GE Y I I RFY +CT+C+AE+T TDP+++DY ESGASRNYEPW R
Sbjct: 61 FNARKEKT-GEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNYEPWHEKR 119
Query: 113 AEDEAVDEEKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKSRHASVSVDAM 172
++ +E +R D E D M+ LE +TLD+KR+M I ALDE++ +R + V++D
Sbjct: 120 LQEYEENELAERNDIPE-EDEMEKLEQKTLDTKRQMQISDALDELREKSARRSRVNIDDA 178
Query: 173 LEALQSTA--------PEKEKRLEEEDEALIRSIF-QKPREVVRRISDE 212
+ L+ A +K K EEE + +S+F + E++RR++ E
Sbjct: 179 IALLKEDAYGSIEEEESKKRKFEEEEIDREAKSLFSSQDGEIIRRLNAE 227
>sp|P28320|CWC16_YEAST Protein CWC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YJU2 PE=1 SV=1
Length = 278
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 91/170 (53%), Gaps = 31/170 (18%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQIK--------VRMMLPMSIRCNTCGNYIYK 52
M ERK +NKYYPPD++P + ++ R +++K +R+M P S+RC C YI K
Sbjct: 1 MSERKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPK 60
Query: 53 GTKFNSRKEDAIGETYL-GIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRNYEPW 111
KFN +KE + E YL I+I+R C +C+ + +TDP NSDY++E G RNY P
Sbjct: 61 SRKFNGKKE-LLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVGGVRNYVPQ 119
Query: 112 RAED--------EAVDE-------EKKRRDAEEMG------DAMKALENR 140
+ D E++DE EK+ E+MG D M LE R
Sbjct: 120 KPNDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKR 169
>sp|Q5EA37|CC130_BOVIN Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130
PE=2 SV=1
Length = 400
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQ-------------IKVRMMLPMSIRCNTCG 47
MGERK +NKYYPPDF+P K + R N + +R +P +I C+ C
Sbjct: 1 MGERKGVNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 48 NYIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRN 107
N+I G ++N+ K+ +G Y I+RF KC C + ++TDP N DY++ SGA R
Sbjct: 61 NHIGMGVRYNAEKKK-VG-NYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRK 118
Query: 108 YEPWRAED--EAVDEEKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKSRHA 165
E W ED + + E +++ EM DAM LE+ D L L ++ +S A
Sbjct: 119 EERWDMEDNEQVLTTEHEKKQKLEM-DAMFRLEHGEADRSTLKKALPTLSHIQEAQS--A 175
Query: 166 SVSVDAMLEALQSTAPEKEKRLEEEDE 192
A+ L+ EK+K ++EE+E
Sbjct: 176 WKDDFALNSMLRKRFREKKKAMQEEEE 202
>sp|Q9D516|CC130_MOUSE Coiled-coil domain-containing protein 130 OS=Mus musculus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 20/207 (9%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQ-------------IKVRMMLPMSIRCNTCG 47
MGERK NKYYPPDF+P K + R N + +R +P +I C+ C
Sbjct: 1 MGERKGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILVIRFEMPYNIWCDGCK 60
Query: 48 NYIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRN 107
N+I G ++N+ K+ +G Y I+RF KC C + ++TDP N DY++ SGASR
Sbjct: 61 NHIGMGVRYNAEKKK-VG-NYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRK 118
Query: 108 YEPWRAED--EAVDEEKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKSRHA 165
E W ED + + E ++++ E DAM LE+ D L L ++ ++++A
Sbjct: 119 EERWDMEDNEQVLTTEHEKKEKLET-DAMFRLEHGEADRSTLKKALPTLSHIQ--EAQNA 175
Query: 166 SVSVDAMLEALQSTAPEKEKRLEEEDE 192
A+ L+ EK+K ++EE+E
Sbjct: 176 WKDDFALNSMLRRHFREKKKAMQEEEE 202
>sp|Q32PZ9|CC130_RAT Coiled-coil domain-containing protein 130 OS=Rattus norvegicus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 20/207 (9%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQ-------------IKVRMMLPMSIRCNTCG 47
MGERK NKYYPPDF+P K + R N + +R +P +I C+ C
Sbjct: 1 MGERKGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 48 NYIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRN 107
N+I G ++N+ K+ +G Y I+RF KC C + ++TDP N DY++ SGASR
Sbjct: 61 NHIGMGVRYNAEKKK-VG-NYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRK 118
Query: 108 YEPWRAED--EAVDEEKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKSRHA 165
E W ED + + E ++++ E DAM LE+ D L L ++ ++++A
Sbjct: 119 EERWDMEDNEQVLTTEHEKKEKLET-DAMFRLEHGEADRSTLKKALPTLSHIQ--EAQNA 175
Query: 166 SVSVDAMLEALQSTAPEKEKRLEEEDE 192
A+ L+ EK+K ++EE+E
Sbjct: 176 WKDDFALNSMLRRHFREKKKAMQEEEE 202
>sp|P13994|CC130_HUMAN Coiled-coil domain-containing protein 130 OS=Homo sapiens
GN=CCDC130 PE=1 SV=2
Length = 396
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 106/208 (50%), Gaps = 22/208 (10%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQ-------------IKVRMMLPMSIRCNTCG 47
MGERK +NKYYPPDF+P K + R N + +R +P +I C+ C
Sbjct: 1 MGERKGVNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 48 NYIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRN 107
N+I G ++N+ K+ +G Y I+RF KC C + ++TDP N DY++ SGA R
Sbjct: 61 NHIGMGVRYNAEKKK-VG-NYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRK 118
Query: 108 YEPW-RAEDEAV--DEEKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKSRH 164
E W A++E V E +K++ E DAM LE+ D L L ++ +S
Sbjct: 119 EERWDMADNEQVLTTEHEKKQKLET--DAMFRLEHGEADRSTLKKALPTLSHIQEAQS-- 174
Query: 165 ASVSVDAMLEALQSTAPEKEKRLEEEDE 192
A A+ L+ EK+K ++EE+E
Sbjct: 175 AWKDDFALNSMLRRRFREKKKAIQEEEE 202
>sp|Q66I85|CC130_DANRE Coiled-coil domain-containing protein 130 homolog OS=Danio rerio
GN=ccdc130 PE=2 SV=1
Length = 390
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 16/176 (9%)
Query: 1 MGERKVLNKYYPPDFDPSKLP-------------RIRRPKNQQIKVRMMLPMSIRCNTCG 47
MGERK +NK+YPPDFDP+K R R+ + +R +P +I C+ C
Sbjct: 1 MGERKGVNKWYPPDFDPAKHGSINGYYKTHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 48 NYIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRN 107
N+I G ++N+ K+ +G Y I+RF KC C + ++TDP DY++ SGA R
Sbjct: 61 NHIGMGVRYNAEKK-KVG-NYYTTPIYRFRMKCHLCVNYIEMQTDPATCDYVIVSGAQRK 118
Query: 108 YEPW-RAEDEAVDEEKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKS 162
E W AE+E + ++ + DAM L++ D ++ + +L+E++ +S
Sbjct: 119 EERWDMAENEQILTTERNEKEKLETDAMYKLDHGGKDKEKLRAAIPSLNELQEHQS 174
>sp|Q6DJK9|CC130_XENLA Coiled-coil domain-containing protein 130 OS=Xenopus laevis
GN=ccdc130 PE=2 SV=1
Length = 384
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 22/179 (12%)
Query: 1 MGERKVLNKYYPPDFDPSKLPRIRRPKNQQ-------------IKVRMMLPMSIRCNTCG 47
MGERK NKYYPPDFDP+K + +N + +R +P +I C+ C
Sbjct: 1 MGERKGTNKYYPPDFDPAKHGSLNGYRNSHPLRERARKLSQGILIIRFEMPYNIWCDGCK 60
Query: 48 NYIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRN 107
N+I G ++N+ K+ +G Y I+RF KC C + ++TDP + DY++ SGA R
Sbjct: 61 NHIGMGVRYNAEKKK-VG-NYYTTPIYRFRMKCHLCVNYIEMQTDPASCDYVIVSGAQRK 118
Query: 108 YEPWRAEDE----AVDEEKKRRDAEEMGDAMKALENRTLDSKREMDILAALDEMKSMKS 162
E W +D + E+K+R D+M LE+ D + +L E++ ++S
Sbjct: 119 EERWDMQDNEQILTTEHEQKQRLET---DSMFRLEHGVQDKAKLQRAAPSLSELQEVQS 174
>sp|Q7K0F0|CC130_DROME Coiled-coil domain-containing protein 130 homolog OS=Drosophila
melanogaster GN=CG15084 PE=2 SV=1
Length = 316
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 1 MGERKVLNKYYPPDFDPSKLP------------RIRRPKNQQIKVRMMLPMSIRCNTCGN 48
MGERK NKYYPPD+DP K R R+ I +R +P +I C+ C N
Sbjct: 1 MGERKGQNKYYPPDYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMPYNIWCDGCKN 60
Query: 49 YIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRNY 108
+I G ++N+ K +G Y +F+F KC C I+TDP N DY++ SGA R
Sbjct: 61 HIGMGVRYNAEK-TKVG-MYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDYVILSGARRQE 118
Query: 109 EPWR-AEDEAVDEEKKRRDAEEMGDAMKALENR 140
W ++E V E K DAM LE++
Sbjct: 119 NRWDPLQNEQVVPETKEVQKRLFDDAMYKLEHQ 151
>sp|Q54TR4|CC130_DICDI Coiled-coil domain-containing protein 130 homolog OS=Dictyostelium
discoideum GN=DDB_G0281599 PE=3 SV=1
Length = 325
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 14/127 (11%)
Query: 1 MGERKVLNKYYPPDFDPSKLP------------RIRRPKNQQIKVRMMLPMSIRCNTCGN 48
M ERK NKYYPPD+DPSK R R+ + +R +P S+ C C
Sbjct: 1 MAERKATNKYYPPDWDPSKGSINQYRGQHHLRDRARKIDQGILIIRFEMPFSVWCLGCEC 60
Query: 49 YIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRNY 108
+I G +FN+ K+ + Y I+ F KC +CS + I+ DP+N+DY + SG +
Sbjct: 61 HIGMGVRFNAEKKTV--DKYFTSNIYSFKMKCHQCSNQFEIQNDPKNTDYKLISGLKKRI 118
Query: 109 EPWRAED 115
E + ED
Sbjct: 119 EQFNPED 125
>sp|O60141|CWC16_SCHPO Protein saf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=saf4 PE=3 SV=2
Length = 299
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 7 LNKYYPPDFDPSKLPRIRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRKEDAIGE 66
+ KY PP+ P+ + + +N +R +P + CN C N I +GT+FN+ K++ IG
Sbjct: 6 MGKYIPPE-GPNAKRKFDKLRNV---IRFEMPFPVWCNNCENIIQQGTRFNAVKKE-IG- 59
Query: 67 TYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASRNYEPWRAEDEAVDEEKKRRD 126
+Y +I+ F KC CS + + TDP+N++YIV SG R EP +D K D
Sbjct: 60 SYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASGGRRKIEP---QDINERPAKAEND 116
Query: 127 AEEMGDAMKALENRTLDSKRE 147
+ DA++ALE + K E
Sbjct: 117 EKVPSDAIEALETQLTQQKSE 137
>sp|Q09651|CC130_CAEEL Coiled-coil domain-containing protein 130 homolog OS=Caenorhabditis
elegans GN=ZK1307.9 PE=1 SV=1
Length = 369
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 1 MGERKVLNKYYPPDFD-----------PSKLPRIRRPKNQQ--IKVRMMLPMSIRCNTCG 47
MGERK N YYPPDF+ + R R K Q + +R +P +I C C
Sbjct: 1 MGERKGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCH 60
Query: 48 NYIYKGTKFNSRKEDAIGETYLGIQIFRFYFKCTKCSAELTIKTDPQNSDYIVESGASR 106
N++ G ++N+ K+ IG Y + F KC C I+TDP+N DY + G SR
Sbjct: 61 NHVGMGVRYNAEKK-KIG-MYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSR 117
>sp|Q3MHF7|MTAP_BOVIN S-methyl-5'-thioadenosine phosphorylase OS=Bos taurus GN=MTAP PE=1
SV=1
Length = 283
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 26 PKNQQIKVRMMLPMSIRCNTCGNYI-YKGTKFNSRKEDAIGETYLGIQIFRFYF------ 78
PK +++ + + +RC++ G I +G +F+SR E + +T+ G +
Sbjct: 146 PKTREVLIETAKKLGLRCHSKGTMITIEGPRFSSRAESIMFQTW-GADVINMTTVPEVVL 204
Query: 79 --KCTKCSAELTIKTDPQNSDYIVESGASRNYEPWRAEDEAVDEEKKRRDAEEMGDAMKA 136
+ C A + + TD Y+ W+ +EAV ++ + +E + K+
Sbjct: 205 AKEAGICYASIAMATD---------------YDCWKEHEEAVSVDRVLKTLKENANKAKS 249
Query: 137 LENRTLDSKREMDILAALDEMKSM 160
L T+ M+ L MK M
Sbjct: 250 LLLTTIPQIGSMEWSETLHNMKKM 273
>sp|B1I733|DDL_STRPI D-alanine--D-alanine ligase OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=ddl PE=3 SV=1
Length = 347
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 26/198 (13%)
Query: 144 SKREMDILAALDEMK-------SMKSRHASVSVDAMLEALQSTAPEKEKRLE-----EED 191
++RE+ +L+A M+ ++K+ S S D + S P +E RL + D
Sbjct: 14 AEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRLMTNETIDWD 73
Query: 192 EALIRSIFQKPREVVRRISDEDLDDDGDLFQFASERNEGSSNNLKKRKLSEDVPSK--PT 249
+ + S + R VV + + +DG + +G LK + ++ S
Sbjct: 74 KKVAPSAIYEERAVVFPVLHGPMGEDGSV--------QGFLEVLKMPYVGCNILSSSLAM 125
Query: 250 DALTEASFSDSTSNGENPTVSKTESD---TKVPRKSSSIQIQVIKKPATVSATKVIAKSE 306
D +T +S + P V+ E D K+ + V KP+ + ++ I+KSE
Sbjct: 126 DKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEELTYPVFTKPSNMGSSVGISKSE 185
Query: 307 NKSEERTGLQSLCQNYDS 324
N+ E R L+ L YDS
Sbjct: 186 NQEELRQALK-LAFQYDS 202
>sp|C1CFP2|DDL_STRZJ D-alanine--D-alanine ligase OS=Streptococcus pneumoniae (strain
JJA) GN=ddl PE=3 SV=1
Length = 347
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 26/198 (13%)
Query: 144 SKREMDILAALDEMK-------SMKSRHASVSVDAMLEALQSTAPEKEKRLE-----EED 191
++RE+ +L+A M+ ++K+ S S D++ S AP +E RL + D
Sbjct: 14 AEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMTNETIDWD 73
Query: 192 EALIRSIFQKPREVVRRISDEDLDDDGDLFQFASERNEGSSNNLKKRKLSEDVPSK--PT 249
+ + S + VV + + +DG + +G LK + ++ S
Sbjct: 74 KKVAPSAIYEEGAVVFPVLHGPMGEDGSV--------QGFLEVLKMPYVGCNILSSSLAM 125
Query: 250 DALTEASFSDSTSNGENPTVSKTESD---TKVPRKSSSIQIQVIKKPATVSATKVIAKSE 306
D +T +S + P V+ E D K+ + V KP+ + ++ I+KSE
Sbjct: 126 DKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKSE 185
Query: 307 NKSEERTGLQSLCQNYDS 324
N+ E R L+ L YDS
Sbjct: 186 NQEELRQALK-LAFRYDS 202
>sp|B8ZM66|DDL_STRPJ D-alanine--D-alanine ligase OS=Streptococcus pneumoniae (strain
ATCC 700669 / Spain 23F-1) GN=ddl PE=3 SV=1
Length = 347
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 26/198 (13%)
Query: 144 SKREMDILAALDEMK-------SMKSRHASVSVDAMLEALQSTAPEKEKRLE-----EED 191
++RE+ +L+A M+ ++K+ S S D++ S AP +E RL + D
Sbjct: 14 AEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMTNETIDWD 73
Query: 192 EALIRSIFQKPREVVRRISDEDLDDDGDLFQFASERNEGSSNNLKKRKLSEDVPSK--PT 249
+ + S + VV + + +DG + +G LK + ++ S
Sbjct: 74 KKVAPSAIYEEGAVVFPVLHGPMGEDGSV--------QGFLEVLKMPYVGCNILSSSLAM 125
Query: 250 DALTEASFSDSTSNGENPTVSKTESD---TKVPRKSSSIQIQVIKKPATVSATKVIAKSE 306
D +T +S + P V+ E D K+ + V KP+ + ++ I+KSE
Sbjct: 126 DKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKSE 185
Query: 307 NKSEERTGLQSLCQNYDS 324
N+ E R L+ L YDS
Sbjct: 186 NQEELRQALK-LAFRYDS 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,181,940
Number of Sequences: 539616
Number of extensions: 4797330
Number of successful extensions: 24123
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 708
Number of HSP's that attempted gapping in prelim test: 22340
Number of HSP's gapped (non-prelim): 3035
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)