Query 020341
Match_columns 327
No_of_seqs 306 out of 1670
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 6.9E-32 1.5E-36 226.4 15.7 137 2-194 1-138 (138)
2 KOG1717 Dual specificity phosp 100.0 2.8E-31 6.1E-36 238.3 11.5 142 1-196 171-313 (343)
3 KOG1718 Dual specificity phosp 100.0 3.6E-30 7.8E-35 217.3 13.2 138 3-196 18-156 (198)
4 KOG1716 Dual specificity phosp 100.0 2.7E-29 5.9E-34 235.8 15.0 148 2-202 75-223 (285)
5 cd00127 DSPc Dual specificity 100.0 1.9E-28 4.1E-33 205.0 15.1 137 2-192 2-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 1.8E-28 4E-33 204.0 12.9 131 9-193 1-132 (133)
7 PRK12361 hypothetical protein; 99.9 2.3E-24 5E-29 219.3 15.3 142 2-196 95-238 (547)
8 PTZ00242 protein tyrosine phos 99.8 1.1E-19 2.3E-24 157.8 13.9 93 100-194 60-157 (166)
9 KOG1719 Dual specificity phosp 99.8 3.9E-20 8.5E-25 154.5 10.4 141 4-194 27-169 (183)
10 PTZ00393 protein tyrosine phos 99.8 2.1E-19 4.6E-24 162.2 14.6 94 100-196 136-230 (241)
11 KOG1720 Protein tyrosine phosp 99.6 4.2E-15 9.1E-20 130.5 13.2 94 99-193 113-206 (225)
12 COG2453 CDC14 Predicted protei 99.6 2.3E-15 5.1E-20 132.3 11.2 94 99-195 70-165 (180)
13 PF05706 CDKN3: Cyclin-depende 99.4 3.5E-13 7.6E-18 115.5 8.5 106 17-168 61-168 (168)
14 PF03162 Y_phosphatase2: Tyros 99.4 5.9E-13 1.3E-17 115.3 9.4 138 3-193 8-148 (164)
15 TIGR01244 conserved hypothetic 99.4 6.2E-12 1.3E-16 105.6 11.8 127 3-179 3-129 (135)
16 KOG2836 Protein tyrosine phosp 99.3 4.3E-11 9.3E-16 98.3 11.7 89 101-192 62-153 (173)
17 smart00012 PTPc_DSPc Protein t 99.1 7E-10 1.5E-14 87.2 11.2 82 108-189 9-100 (105)
18 smart00404 PTPc_motif Protein 99.1 7E-10 1.5E-14 87.2 11.2 82 108-189 9-100 (105)
19 PF04273 DUF442: Putative phos 99.1 4E-10 8.7E-15 91.2 8.0 101 3-152 3-103 (110)
20 COG5350 Predicted protein tyro 99.1 8.8E-10 1.9E-14 92.5 10.2 71 116-186 75-146 (172)
21 PLN02727 NAD kinase 98.9 8.4E-09 1.8E-13 108.0 10.5 109 8-163 262-370 (986)
22 cd00047 PTPc Protein tyrosine 98.9 1.9E-08 4E-13 91.4 11.0 90 100-189 128-226 (231)
23 PF13350 Y_phosphatase3: Tyros 98.9 1.7E-08 3.7E-13 87.2 10.0 36 135-171 125-160 (164)
24 smart00194 PTPc Protein tyrosi 98.8 4.7E-08 1E-12 90.4 10.2 79 111-189 168-253 (258)
25 COG3453 Uncharacterized protei 98.7 1.7E-07 3.8E-12 75.7 10.7 120 3-174 4-125 (130)
26 PRK15375 pathogenicity island 98.4 1.8E-06 3.9E-11 85.8 10.7 93 102-194 423-528 (535)
27 KOG1572 Predicted protein tyro 98.3 2.9E-06 6.3E-11 76.5 9.6 119 4-174 62-187 (249)
28 PF00102 Y_phosphatase: Protei 98.3 4.5E-06 9.8E-11 75.1 9.7 69 121-189 155-230 (235)
29 PHA02742 protein tyrosine phos 98.2 8.5E-06 1.8E-10 77.4 10.7 51 135-185 230-285 (303)
30 KOG2283 Clathrin coat dissocia 98.2 5.9E-06 1.3E-10 81.7 8.8 88 106-194 77-173 (434)
31 PHA02747 protein tyrosine phos 98.2 1.3E-05 2.9E-10 76.4 10.5 54 135-188 230-288 (312)
32 PHA02740 protein tyrosine phos 98.1 1.7E-05 3.7E-10 75.2 10.6 51 135-185 222-277 (298)
33 PHA02746 protein tyrosine phos 98.1 2.1E-05 4.6E-10 75.4 10.6 53 135-187 248-305 (323)
34 PF14566 PTPlike_phytase: Inos 98.1 6.9E-06 1.5E-10 70.0 6.2 61 97-158 88-148 (149)
35 PF04179 Init_tRNA_PT: Initiat 98.1 2.5E-05 5.5E-10 77.7 10.9 88 104-191 341-449 (451)
36 PHA02738 hypothetical protein; 98.0 4.8E-05 1E-09 72.9 10.5 53 135-187 228-285 (320)
37 COG2365 Protein tyrosine/serin 97.8 0.00014 3.1E-09 67.2 9.9 57 134-190 136-192 (249)
38 KOG0792 Protein tyrosine phosp 97.7 0.00012 2.7E-09 77.7 9.3 80 108-187 1035-1121(1144)
39 KOG0790 Protein tyrosine phosp 97.7 8.6E-05 1.9E-09 72.4 6.6 56 133-188 450-513 (600)
40 COG5599 PTP2 Protein tyrosine 97.5 0.00014 3.1E-09 66.7 4.9 79 101-183 184-281 (302)
41 KOG2386 mRNA capping enzyme, g 97.4 0.0004 8.7E-09 67.6 7.6 76 121-196 110-186 (393)
42 KOG0789 Protein tyrosine phosp 97.0 0.0029 6.4E-08 62.1 8.4 52 134-185 299-356 (415)
43 KOG0791 Protein tyrosine phosp 96.9 0.0028 6.1E-08 60.8 7.5 56 134-189 287-347 (374)
44 KOG0793 Protein tyrosine phosp 94.3 0.1 2.2E-06 54.0 6.4 79 101-184 894-983 (1004)
45 PF14671 DSPn: Dual specificit 94.1 0.19 4.1E-06 42.5 6.8 66 110-176 39-112 (141)
46 KOG4228 Protein tyrosine phosp 93.7 0.11 2.4E-06 56.3 5.8 62 122-183 713-784 (1087)
47 KOG4471 Phosphatidylinositol 3 92.8 0.17 3.6E-06 51.6 5.0 31 128-158 366-399 (717)
48 KOG4228 Protein tyrosine phosp 92.5 0.21 4.6E-06 54.2 5.8 50 133-182 1017-1071(1087)
49 cd01518 RHOD_YceA Member of th 84.4 4.5 9.8E-05 31.2 6.8 27 134-163 61-87 (101)
50 KOG1089 Myotubularin-related p 83.0 2.4 5.2E-05 43.5 5.7 33 126-158 334-369 (573)
51 PLN02160 thiosulfate sulfurtra 81.9 5.9 0.00013 32.9 6.9 26 135-163 82-107 (136)
52 PRK01415 hypothetical protein; 80.4 3.3 7.1E-05 38.3 5.2 28 133-163 170-197 (247)
53 PF06602 Myotub-related: Myotu 80.3 3.9 8.4E-05 39.8 5.9 20 133-152 229-249 (353)
54 PF10122 Mu-like_Com: Mu-like 73.4 0.97 2.1E-05 31.2 -0.2 18 255-272 4-21 (51)
55 PF03226 Yippee-Mis18: Yippee 69.0 1.6 3.5E-05 34.0 0.0 19 255-273 2-20 (96)
56 COG1660 Predicted P-loop-conta 62.8 7.7 0.00017 36.2 3.2 17 136-152 245-261 (286)
57 COG0607 PspE Rhodanese-related 62.2 9.4 0.0002 29.4 3.3 26 134-162 61-86 (110)
58 smart00400 ZnF_CHCC zinc finge 62.1 9.2 0.0002 26.5 2.9 32 138-171 23-54 (55)
59 PF03668 ATP_bind_2: P-loop AT 60.4 17 0.00038 34.3 5.2 17 136-152 244-260 (284)
60 PRK05416 glmZ(sRNA)-inactivati 59.3 17 0.00036 34.4 5.0 33 120-152 223-263 (288)
61 PRK00142 putative rhodanese-re 59.3 14 0.0003 35.4 4.4 43 135-192 172-214 (314)
62 cd01533 4RHOD_Repeat_2 Member 59.2 21 0.00047 27.8 4.9 25 135-162 67-91 (109)
63 PF04343 DUF488: Protein of un 56.6 54 0.0012 26.4 7.0 16 21-36 7-22 (122)
64 PF00096 zf-C2H2: Zinc finger, 56.5 2.2 4.8E-05 23.7 -0.9 20 256-275 1-20 (23)
65 PF03861 ANTAR: ANTAR domain; 55.6 17 0.00038 25.2 3.4 26 149-174 15-40 (56)
66 PF00581 Rhodanese: Rhodanese- 53.1 62 0.0013 24.6 6.7 58 105-163 34-98 (113)
67 cd01523 RHOD_Lact_B Member of 52.7 23 0.0005 27.0 4.0 27 134-163 61-87 (100)
68 KOG3399 Predicted Yippee-type 51.5 5.9 0.00013 32.5 0.4 24 253-276 13-36 (122)
69 cd01532 4RHOD_Repeat_1 Member 49.4 25 0.00055 26.6 3.7 29 134-163 50-78 (92)
70 TIGR03865 PQQ_CXXCW PQQ-depend 49.0 37 0.0008 29.0 5.1 27 135-163 117-143 (162)
71 TIGR03642 cas_csx13 CRISPR-ass 47.7 67 0.0015 26.5 6.1 61 101-161 53-116 (124)
72 cd01528 RHOD_2 Member of the R 47.6 46 0.00099 25.4 5.0 26 135-163 59-84 (101)
73 cd01448 TST_Repeat_1 Thiosulfa 47.2 32 0.0007 27.2 4.2 26 136-163 81-106 (122)
74 COG2888 Predicted Zn-ribbon RN 47.0 5.2 0.00011 28.6 -0.5 12 253-264 36-47 (61)
75 cd01520 RHOD_YbbB Member of th 44.5 45 0.00098 26.9 4.7 26 136-163 88-113 (128)
76 PRK05320 rhodanese superfamily 44.2 36 0.00078 31.5 4.6 27 134-163 175-201 (257)
77 COG4416 Com Mu-like prophage p 43.0 4.7 0.0001 28.2 -1.2 17 255-271 4-20 (60)
78 PF01807 zf-CHC2: CHC2 zinc fi 42.4 26 0.00056 27.3 2.8 36 138-175 54-89 (97)
79 PF09082 DUF1922: Domain of un 41.8 11 0.00025 27.6 0.6 20 255-275 3-22 (68)
80 cd01534 4RHOD_Repeat_3 Member 41.1 34 0.00074 25.8 3.3 26 135-163 57-82 (95)
81 PF13912 zf-C2H2_6: C2H2-type 40.9 5.7 0.00012 23.0 -0.9 21 255-275 1-21 (27)
82 PF13344 Hydrolase_6: Haloacid 37.8 1.3E+02 0.0028 23.4 6.2 44 121-165 16-59 (101)
83 COG3091 SprT Zn-dependent meta 36.4 16 0.00035 31.2 0.8 15 253-267 138-152 (156)
84 PRK14890 putative Zn-ribbon RN 36.1 10 0.00023 27.0 -0.3 11 254-264 35-45 (59)
85 PF03811 Zn_Tnp_IS1: InsA N-te 35.2 15 0.00033 23.5 0.4 10 253-262 27-36 (36)
86 cd01443 Cdc25_Acr2p Cdc25 enzy 34.8 1E+02 0.0022 24.1 5.3 17 135-151 67-83 (113)
87 smart00834 CxxC_CXXC_SSSS Puta 33.6 20 0.00044 22.8 0.8 13 253-265 3-15 (41)
88 cd01444 GlpE_ST GlpE sulfurtra 32.8 99 0.0022 22.9 4.8 25 135-162 57-81 (96)
89 COG1054 Predicted sulfurtransf 32.7 2E+02 0.0043 27.5 7.4 35 121-157 156-193 (308)
90 PRK12554 undecaprenyl pyrophos 32.6 42 0.00091 31.5 3.1 27 142-170 165-191 (276)
91 PF02673 BacA: Bacitracin resi 32.0 51 0.0011 30.7 3.5 28 142-171 159-186 (259)
92 smart00355 ZnF_C2H2 zinc finge 31.9 9.3 0.0002 21.0 -1.0 20 256-275 1-20 (26)
93 PF03853 YjeF_N: YjeF-related 31.7 51 0.0011 28.3 3.3 73 123-200 11-86 (169)
94 cd01522 RHOD_1 Member of the R 31.2 77 0.0017 25.1 4.1 25 135-162 65-89 (117)
95 PF13894 zf-C2H2_4: C2H2-type 30.9 11 0.00023 20.5 -0.8 20 256-275 1-20 (24)
96 KOG0235 Phosphoglycerate mutas 30.8 2E+02 0.0044 26.0 7.0 53 112-170 129-186 (214)
97 PF09723 Zn-ribbon_8: Zinc rib 29.5 26 0.00056 23.0 0.8 13 253-265 3-15 (42)
98 KOG1530 Rhodanese-related sulf 29.5 1.3E+02 0.0029 25.1 5.1 14 136-150 91-104 (136)
99 TIGR00753 undec_PP_bacA undeca 29.4 55 0.0012 30.4 3.2 27 142-170 159-185 (255)
100 cd04445 DEP_PLEK1 DEP (Disheve 29.2 69 0.0015 25.3 3.2 36 132-172 22-58 (99)
101 TIGR02605 CxxC_CxxC_SSSS putat 28.7 25 0.00054 23.8 0.6 12 253-264 3-14 (52)
102 TIGR02981 phageshock_pspE phag 28.6 1.3E+02 0.0028 23.4 4.9 24 136-162 60-83 (101)
103 PRK04860 hypothetical protein; 28.5 33 0.0007 29.6 1.4 17 253-269 141-157 (160)
104 TIGR00853 pts-lac PTS system, 28.4 41 0.0009 26.1 1.9 12 135-146 4-15 (95)
105 cd01530 Cdc25 Cdc25 phosphatas 28.4 63 0.0014 25.9 3.1 22 135-158 69-91 (121)
106 cd01447 Polysulfide_ST Polysul 28.4 57 0.0012 24.6 2.7 25 135-162 62-86 (103)
107 PRK00281 undecaprenyl pyrophos 28.2 60 0.0013 30.4 3.3 27 142-170 163-189 (268)
108 cd01526 RHOD_ThiF Member of th 27.9 77 0.0017 25.2 3.5 25 135-162 73-97 (122)
109 cd01531 Acr2p Eukaryotic arsen 27.7 2E+02 0.0044 22.3 5.9 19 134-152 62-80 (113)
110 PF10302 DUF2407: DUF2407 ubiq 27.6 29 0.00063 27.3 0.9 10 135-144 86-95 (97)
111 cd01529 4RHOD_Repeats Member o 27.6 77 0.0017 23.9 3.3 26 135-163 57-82 (96)
112 cd01525 RHOD_Kc Member of the 27.3 78 0.0017 24.1 3.3 27 134-163 65-91 (105)
113 PF12760 Zn_Tnp_IS1595: Transp 26.6 26 0.00057 23.3 0.4 11 253-263 35-45 (46)
114 COG4738 Predicted transcriptio 26.5 54 0.0012 26.7 2.2 33 142-175 22-54 (124)
115 COG1571 Predicted DNA-binding 26.3 32 0.00068 34.3 1.1 15 255-269 367-381 (421)
116 PF09419 PGP_phosphatase: Mito 26.2 47 0.001 28.9 2.0 31 2-33 14-46 (168)
117 PF08050 Tet_res_leader: Tetra 24.8 36 0.00079 18.6 0.7 12 257-268 2-13 (20)
118 PF09623 Cas_NE0113: CRISPR-as 24.6 1.7E+02 0.0037 26.6 5.4 47 119-165 95-142 (224)
119 COG0794 GutQ Predicted sugar p 24.2 1.3E+02 0.0027 27.1 4.4 35 120-159 27-61 (202)
120 COG3707 AmiR Response regulato 24.2 72 0.0016 28.4 2.8 22 152-173 150-171 (194)
121 TIGR00319 desulf_FeS4 desulfof 23.9 37 0.00081 21.0 0.7 14 253-266 5-18 (34)
122 PRK05772 translation initiatio 23.8 1.5E+02 0.0033 29.0 5.3 12 133-144 165-177 (363)
123 PF11822 DUF3342: Domain of un 23.8 3E+02 0.0066 26.5 7.1 66 118-188 90-158 (317)
124 cd01519 RHOD_HSP67B2 Member of 23.7 1E+02 0.0022 23.4 3.4 25 136-163 68-92 (106)
125 PRK10886 DnaA initiator-associ 23.7 1.7E+02 0.0037 25.9 5.2 35 117-154 23-58 (196)
126 PF06397 Desulfoferrod_N: Desu 23.4 35 0.00077 21.9 0.5 13 253-265 4-16 (36)
127 KOG1985 Vesicle coat complex C 23.2 57 0.0012 35.1 2.3 64 251-315 214-290 (887)
128 KOG1197 Predicted quinone oxid 22.8 4.4E+02 0.0096 25.0 7.7 67 123-192 133-211 (336)
129 PF10955 DUF2757: Protein of u 22.7 41 0.00088 25.4 0.8 15 254-268 3-17 (76)
130 PF13717 zinc_ribbon_4: zinc-r 22.6 50 0.0011 20.9 1.1 14 252-265 22-35 (36)
131 PF07975 C1_4: TFIIH C1-like d 22.5 26 0.00057 24.3 -0.2 24 253-276 19-42 (51)
132 cd01317 DHOase_IIa Dihydroorot 22.4 3E+02 0.0066 26.5 7.1 36 1-36 13-54 (374)
133 PF07295 DUF1451: Protein of u 22.0 4.6E+02 0.0099 22.2 7.2 45 114-173 13-58 (146)
134 cd05567 PTS_IIB_mannitol PTS_I 21.7 86 0.0019 23.6 2.5 16 136-152 2-17 (87)
135 PRK10287 thiosulfate:cyanide s 21.5 2E+02 0.0043 22.6 4.7 24 136-162 62-85 (104)
136 PRK04351 hypothetical protein; 21.5 39 0.00084 28.8 0.6 16 253-268 130-145 (149)
137 PRK11493 sseA 3-mercaptopyruva 21.4 79 0.0017 29.4 2.7 24 136-162 233-256 (281)
138 PRK09590 celB cellobiose phosp 21.4 73 0.0016 25.3 2.1 13 136-148 3-15 (104)
139 PF01641 SelR: SelR domain; I 21.2 52 0.0011 27.2 1.3 21 252-272 34-54 (124)
140 PRK00162 glpE thiosulfate sulf 21.2 1.8E+02 0.0039 22.3 4.4 27 134-163 58-84 (108)
141 TIGR01391 dnaG DNA primase, ca 21.0 2.6E+02 0.0056 27.8 6.4 37 138-176 55-91 (415)
142 TIGR03167 tRNA_sel_U_synt tRNA 20.9 2.1E+02 0.0046 27.3 5.5 25 136-162 76-100 (311)
143 cd00974 DSRD Desulforedoxin (D 20.6 48 0.001 20.5 0.7 13 254-266 3-15 (34)
144 COG1968 BacA Undecaprenyl pyro 20.6 1E+02 0.0022 28.9 3.2 26 143-170 165-190 (270)
145 PRK13352 thiamine biosynthesis 20.5 3.1E+02 0.0068 27.4 6.6 52 122-173 143-217 (431)
146 COG1831 Predicted metal-depend 20.4 5.4E+02 0.012 24.3 7.8 71 99-173 33-108 (285)
147 PRK05600 thiamine biosynthesis 20.3 99 0.0021 30.3 3.2 24 136-162 334-357 (370)
148 cd01521 RHOD_PspE2 Member of t 20.3 1.4E+02 0.0031 23.1 3.7 26 135-162 65-91 (110)
149 PF01964 ThiC: ThiC family; I 20.2 3E+02 0.0064 27.5 6.4 52 122-173 139-213 (420)
150 PRK06036 translation initiatio 20.2 1.6E+02 0.0035 28.5 4.6 17 133-149 146-163 (339)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.98 E-value=6.9e-32 Score=226.42 Aligned_cols=137 Identities=34% Similarity=0.519 Sum_probs=124.2
Q ss_pred CccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020341 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
|++|.|+||+|+.+++.+.+.|+++||++||||+.+.
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~------------------------------------------- 37 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEV------------------------------------------- 37 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCC-------------------------------------------
Confidence 8999999999999999999999999999999997621
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc
Q 020341 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (327)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~ 160 (327)
. . ....++.|+++|+.|....++.+.|+.+++||+..+.+| +|||||.+|+|||+++++||||+..
T Consensus 38 -~--~----------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 38 -P--N----------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred -C--C----------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 0 0 002357889999999878889999999999999999877 8999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHh
Q 020341 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (327)
Q Consensus 161 ~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~ 194 (327)
||++++|+.+|+++||.+.||.+|++||+.||++
T Consensus 105 ~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 105 NLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred CCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999974
No 2
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=2.8e-31 Score=238.30 Aligned_cols=142 Identities=30% Similarity=0.498 Sum_probs=129.8
Q ss_pred CCccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCC
Q 020341 1 MPYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGS 80 (327)
Q Consensus 1 ~p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
+|.+|+|+||||+..++.+.+.|+++||++||||+..
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpn------------------------------------------- 207 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPN------------------------------------------- 207 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCC-------------------------------------------
Confidence 6899999999999999999999999999999999751
Q ss_pred CCCCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHh
Q 020341 81 RSCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT 159 (327)
Q Consensus 81 ~~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~ 159 (327)
.|..+ ..+-.+.|++||+.|.-..++.+.|++|+.||++++.+. .|||||.+|+|||+||++||||.+
T Consensus 208 ----lpn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 208 ----LPNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred ----Ccchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 01111 223368899999999999999999999999999999887 899999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCC
Q 020341 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 196 (327)
Q Consensus 160 ~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~ 196 (327)
..+++.+|+.+|+.++..+.||.+||.||..||+++.
T Consensus 277 l~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 277 LNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred hccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999874
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3.6e-30 Score=217.27 Aligned_cols=138 Identities=33% Similarity=0.431 Sum_probs=123.5
Q ss_pred ccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020341 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
++|.++|||++--.|.+...|+++|||+|||++.+.
T Consensus 18 SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-------------------------------------------- 53 (198)
T KOG1718|consen 18 SQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-------------------------------------------- 53 (198)
T ss_pred hhcCcceeEeccccccCHHHHHhcCceEEEEcccCC--------------------------------------------
Confidence 689999999988888889999999999999997520
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhC-CcEEEEcCCCCchhHHHHHHHHHHhcC
Q 020341 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE-GGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (327)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~-g~VLVHC~aG~sRS~tvv~AyLm~~~~ 161 (327)
|+... -++.|+.+|+.|.+...+.+||+.+.+.|+..... |++||||.||+|||+++|+||||+..+
T Consensus 54 ---pn~~l---------~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~ 121 (198)
T KOG1718|consen 54 ---PNTSL---------PDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHC 121 (198)
T ss_pred ---CCccC---------CCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHcc
Confidence 11111 14678999999999999999999999999998655 599999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCC
Q 020341 162 LSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 196 (327)
Q Consensus 162 ~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~ 196 (327)
+++.||+.+++++||.+.||.||++||..||..++
T Consensus 122 msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~ 156 (198)
T KOG1718|consen 122 MSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLF 156 (198)
T ss_pred chHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999765
No 4
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=2.7e-29 Score=235.78 Aligned_cols=148 Identities=36% Similarity=0.489 Sum_probs=130.9
Q ss_pred CccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020341 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
+..|.|+||+|+..++.+...|.+.||+||||+..++..
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~----------------------------------------- 113 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPN----------------------------------------- 113 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCCc-----------------------------------------
Confidence 467999999999999999999999999999999763200
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc
Q 020341 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (327)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~ 160 (327)
+. . ...-.+.|++|++.|.+..+|..+|+.+++||+.++.+| +|||||.+|+|||+|+++||||+.+
T Consensus 114 ----~~-~-------~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 114 ----PR-F-------LKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred ----cc-c-------ccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 00 0 001157789999999999999999999999999999877 8999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCcCCCC
Q 020341 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGS 202 (327)
Q Consensus 161 ~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~~~~~~~ 202 (327)
+|++++|+++|+++||.+.||.||+.||.+|++++.......
T Consensus 182 ~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 182 GLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred CCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999999999987665544
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=1.9e-28 Score=204.98 Aligned_cols=137 Identities=37% Similarity=0.532 Sum_probs=122.3
Q ss_pred CccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020341 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
+++|.|+||+|+++++.|.+.|+++||++||||+.+.+
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~------------------------------------------ 39 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVP------------------------------------------ 39 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCC------------------------------------------
Confidence 57999999999999999999999999999999986210
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc
Q 020341 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (327)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~ 160 (327)
. + .....++.|+++|+.|.+..++...++.+++||+...++| +|||||.+|.|||+++++||||...
T Consensus 40 --~-~---------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 40 --N-E---------NLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred --C-c---------ccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 0 0 0112367789999999888888899999999999998876 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCcccCCHHHHHHHHHHH
Q 020341 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFE 192 (327)
Q Consensus 161 ~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e 192 (327)
++++++|+++|++.||.+.||.+|++||..||
T Consensus 108 ~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 108 GLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999986
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.96 E-value=1.8e-28 Score=204.04 Aligned_cols=131 Identities=35% Similarity=0.556 Sum_probs=116.9
Q ss_pred eEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 020341 9 LFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTK 88 (327)
Q Consensus 9 LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (327)
||||+.+++. ...|++.||++|||++.+.. .+
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~---------------------------------------------~~-- 32 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECP---------------------------------------------NP-- 32 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSS---------------------------------------------TS--
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCc---------------------------------------------Cc--
Confidence 7999999999 99999999999999976210 00
Q ss_pred hhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHH
Q 020341 89 LLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGA 167 (327)
Q Consensus 89 ~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~A 167 (327)
. .....++.++++|+.|....++.+.|+.+++||+++..+| +|||||.+|+|||+++++||||...+|++++|
T Consensus 33 ~------~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A 106 (133)
T PF00782_consen 33 Y------FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEA 106 (133)
T ss_dssp H------HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHH
T ss_pred h------hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHH
Confidence 0 0123367889999999889999999999999999998766 89999999999999999999999999999999
Q ss_pred HHHHHhcCCcccCCHHHHHHHHHHHH
Q 020341 168 LESLRQSCESVCPNDGFLEQLKMFEE 193 (327)
Q Consensus 168 l~~vr~~Rp~~~pn~~f~~qL~~~e~ 193 (327)
+++|+++||.+.||++|++||.+||+
T Consensus 107 ~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 107 IEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999986
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.92 E-value=2.3e-24 Score=219.30 Aligned_cols=142 Identities=26% Similarity=0.361 Sum_probs=121.2
Q ss_pred CccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCC
Q 020341 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
+++|.|+||||+...+.|.+.|++.||++||||+.+. +
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-------------------~----------------------- 132 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEF-------------------D----------------------- 132 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccc-------------------c-----------------------
Confidence 3689999999999999999999999999999997521 0
Q ss_pred CCCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHh-
Q 020341 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT- 159 (327)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~- 159 (327)
.. +.. ....++.|+++|+.|...++ .++|+++++||++++++| +|||||.+|+|||+++++||||.+
T Consensus 133 -~~-~~~--------~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 133 -GL-DWS--------LTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred -cc-ccc--------ccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 00 000 01125778999999977665 577999999999999876 899999999999999999999976
Q ss_pred cCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCC
Q 020341 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 196 (327)
Q Consensus 160 ~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~ 196 (327)
.++++++|+++||++||.+.||++++++|+.|.+.+.
T Consensus 202 ~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~ 238 (547)
T PRK12361 202 PDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGK 238 (547)
T ss_pred cCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999998763
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.83 E-value=1.1e-19 Score=157.83 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=79.0
Q ss_pred cceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhC----C-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhc
Q 020341 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE----G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (327)
Q Consensus 100 ~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~----g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~ 174 (327)
.++.++++|+.|...+. .+.+...++|+++.+.. | +|+|||.+|+|||++++++|||...++++++|+++|+++
T Consensus 60 ~gi~~~~~p~~D~~~P~-~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 60 NGIEVHDWPFDDGAPPP-KAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREK 138 (166)
T ss_pred CCCEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36778899998865444 44467778888887643 5 899999999999999999999999889999999999999
Q ss_pred CCcccCCHHHHHHHHHHHHh
Q 020341 175 CESVCPNDGFLEQLKMFEEM 194 (327)
Q Consensus 175 Rp~~~pn~~f~~qL~~~e~~ 194 (327)
||.+ +|..|+.+|..|++.
T Consensus 139 R~~~-i~~~Q~~~l~~~~~~ 157 (166)
T PTZ00242 139 RKGA-INQTQLQFLKKYKPR 157 (166)
T ss_pred CCCC-chHHHHHHHHHHHHH
Confidence 9975 589999999999874
No 9
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.82 E-value=3.9e-20 Score=154.51 Aligned_cols=141 Identities=23% Similarity=0.402 Sum_probs=117.8
Q ss_pred cccCCeEecCHH-hHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020341 4 LVREHLFIGNIS-DAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 4 ~I~~~LylG~~~-~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
+|++.+.+|.++ ...+.+.++..|+..|+++.++- +
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~y-------------------------------------------E 63 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPY-------------------------------------------E 63 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCch-------------------------------------------h
Confidence 466777777663 23566778899999999997621 0
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhcC
Q 020341 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (327)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~ 161 (327)
-..|.. .....+++++.||..|....+-++.+..+++||++....| .|+|||.||.+||+|++++|||...+
T Consensus 64 ~~a~s~-------~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~ 136 (183)
T KOG1719|consen 64 LLAPSN-------LWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKN 136 (183)
T ss_pred hhhhhH-------HHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcC
Confidence 111111 1345689999999999888888888999999999998888 79999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHh
Q 020341 162 LSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (327)
Q Consensus 162 ~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~ 194 (327)
|++++|+++|+++||.+-..+++++.|.+|.+.
T Consensus 137 wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~ 169 (183)
T KOG1719|consen 137 WTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQ 169 (183)
T ss_pred CCHHHHHHHHHhcCcceeecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999874
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.82 E-value=2.1e-19 Score=162.18 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=82.4
Q ss_pred cceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCCcc
Q 020341 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESV 178 (327)
Q Consensus 100 ~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~ 178 (327)
.+|.++++|+.|...++ .+.+++++++|+..+..| +|+|||.+|+|||++++++|||. .|+++++|+++||++||.+
T Consensus 136 ~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgA 213 (241)
T PTZ00393 136 AGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGA 213 (241)
T ss_pred cCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCC
Confidence 36777888988876665 455788899999888777 89999999999999999999998 6999999999999999977
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 020341 179 CPNDGFLEQLKMFEEMGF 196 (327)
Q Consensus 179 ~pn~~f~~qL~~~e~~~~ 196 (327)
+|..+++.|+.|++...
T Consensus 214 -In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 214 -INKRQLQFLKAYKKKKK 230 (241)
T ss_pred -CCHHHHHHHHHHHHhcc
Confidence 69999999999998753
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.63 E-value=4.2e-15 Score=130.45 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=80.7
Q ss_pred CcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCCcc
Q 020341 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESV 178 (327)
Q Consensus 99 ~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~ 178 (327)
..+|.++++++.|...++... +.+.++.++.+++.|+|.|||.+|.|||++|++||||+.+|++..||+++||..||.+
T Consensus 113 ~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~ 191 (225)
T KOG1720|consen 113 DAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGA 191 (225)
T ss_pred ccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCcc
Confidence 557889999999977766544 5567777777887569999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 020341 179 CPNDGFLEQLKMFEE 193 (327)
Q Consensus 179 ~pn~~f~~qL~~~e~ 193 (327)
-..+.+...|.++..
T Consensus 192 V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 192 VIGPQQHKLLHKQRD 206 (225)
T ss_pred ccCHHHHHHHHHHHH
Confidence 888887777766554
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.62 E-value=2.3e-15 Score=132.31 Aligned_cols=94 Identities=28% Similarity=0.379 Sum_probs=76.5
Q ss_pred CcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHHHHHHhcCC
Q 020341 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGALESLRQSCE 176 (327)
Q Consensus 99 ~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~-~~s~~~Al~~vr~~Rp 176 (327)
..++.++++|+.|...+++ +.++++++||++++++| +|||||.+|+|||+||++||||... .+..++|+..++.+||
T Consensus 70 ~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred cCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 3467789999999988887 66999999999999988 9999999999999999999999995 5666777777777777
Q ss_pred cccCCHHHHHHHHHHHHhC
Q 020341 177 SVCPNDGFLEQLKMFEEMG 195 (327)
Q Consensus 177 ~~~pn~~f~~qL~~~e~~~ 195 (327)
. ++....+++..++...
T Consensus 149 ~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 149 G--AVVTEIQHLFELEQEL 165 (180)
T ss_pred c--ccccHHHHHHHHHHHH
Confidence 5 5555555555555543
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.44 E-value=3.5e-13 Score=115.49 Aligned_cols=106 Identities=20% Similarity=0.322 Sum_probs=66.9
Q ss_pred HhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhc
Q 020341 17 AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTKLLYSLEYA 96 (327)
Q Consensus 17 a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 96 (327)
..|++.|++.|++.||++.+ ..|+....+++.. ..+
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~-----------------~~EL~~l~Vp~L~--------------------------~~~- 96 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLT-----------------DHELARLGVPDLG--------------------------EAA- 96 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S------------------HHHHHHTT-TTHH--------------------------HHH-
T ss_pred HHHHHHHHHCCCCEEEEeCc-----------------HHHHHHcCCccHH--------------------------HHH-
Confidence 67788899999999999977 3455554443222 122
Q ss_pred cCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHH
Q 020341 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGAL 168 (327)
Q Consensus 97 ~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~-~~s~~~Al 168 (327)
...++.++|+||.|...+++.... ..++.|...+++| +|+|||.+|+|||++|++++|+... .+++++|+
T Consensus 97 -~~~Gi~~~h~PI~D~~aPd~~~~~-~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 97 -QARGIAWHHLPIPDGSAPDFAAAW-QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -HHTT-EEEE----TTS---HHHHH-HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred -HHcCCEEEecCccCCCCCCHHHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 233577889999999888876544 5778888888888 8999999999999999988887763 48999886
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.43 E-value=5.9e-13 Score=115.33 Aligned_cols=138 Identities=11% Similarity=0.148 Sum_probs=77.7
Q ss_pred ccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020341 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
..|.++||-|+.+.+.++.+|+++|+++||+|+.+.
T Consensus 8 ~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~-------------------------------------------- 43 (164)
T PF03162_consen 8 GMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEP-------------------------------------------- 43 (164)
T ss_dssp EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---------------------------------------------
T ss_pred cCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCC--------------------------------------------
Confidence 368999999999999999999999999999997521
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCC---CcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHh
Q 020341 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMES---ENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (327)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~---~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~ 159 (327)
.+.+...+ ....++...++++..... .-..+.+.++++.|-+. ++.+|||||..|..|+++|+++|= +.
T Consensus 44 -~~~~~~~f-----~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lR-k~ 115 (164)
T PF03162_consen 44 -PSQDFLEF-----AEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLR-KL 115 (164)
T ss_dssp ---HHHHHH-----HHHTT-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHH-HH
T ss_pred -CCHHHHHH-----HhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHH-HH
Confidence 00111111 112256666777655332 11233455555555333 256999999999999999998887 77
Q ss_pred cCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHH
Q 020341 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEE 193 (327)
Q Consensus 160 ~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~ 193 (327)
+||++..|++.++.--. ...+..-.+.++.|..
T Consensus 116 Q~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 116 QGWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDV 148 (164)
T ss_dssp TTB-HHHHHHHHHHHHG-GG--HHHHHHHHT---
T ss_pred cCCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCc
Confidence 89999999999986322 1334444445555543
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.37 E-value=6.2e-12 Score=105.55 Aligned_cols=127 Identities=17% Similarity=0.174 Sum_probs=84.2
Q ss_pred ccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020341 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
.+|.+.+|+++.....|++.|+++||++|||++... +.
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~------------------------------------------E~ 40 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDR------------------------------------------EE 40 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCC------------------------------------------CC
Confidence 589999999999999999999999999999998621 00
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
...|.... +.......++.|+++|+..... + ...+....++++. ..++||+||.+|. ||+.+.+.++. ..|+
T Consensus 41 ~~~p~~~~--~~~~a~~~gl~y~~iPv~~~~~-~-~~~v~~f~~~~~~--~~~pvL~HC~sG~-Rt~~l~al~~~-~~g~ 112 (135)
T TIGR01244 41 ESQPDFAQ--IKAAAEAAGVTYHHQPVTAGDI-T-PDDVETFRAAIGA--AEGPVLAYCRSGT-RSSLLWGFRQA-AEGV 112 (135)
T ss_pred CCCCCHHH--HHHHHHHCCCeEEEeecCCCCC-C-HHHHHHHHHHHHh--CCCCEEEEcCCCh-HHHHHHHHHHH-HcCC
Confidence 11111100 0001123467888999875332 1 1112333333432 2479999999999 98776655554 4799
Q ss_pred CHHHHHHHHHhcCCccc
Q 020341 163 SSEGALESLRQSCESVC 179 (327)
Q Consensus 163 s~~~Al~~vr~~Rp~~~ 179 (327)
+.+++++..+..--.+.
T Consensus 113 ~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 113 PVEEIVRRAQAAGYDLS 129 (135)
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 99999999987655444
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.29 E-value=4.3e-11 Score=98.29 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=66.8
Q ss_pred ceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhC--C-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCCc
Q 020341 101 KLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCES 177 (327)
Q Consensus 101 ~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~ 177 (327)
+|+.+..|.+|.. ++..+..+..++.+....++ | .|.|||.+|+||.+.+++..|+.. |+.+++|++++|++|.
T Consensus 62 GI~Vldw~f~dg~-ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krr- 138 (173)
T KOG2836|consen 62 GITVLDWPFDDGA-PPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRR- 138 (173)
T ss_pred CceEeecccccCC-CCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhh-
Confidence 5677888887744 44455566666666555443 5 799999999999988887777666 9999999999999998
Q ss_pred ccCCHHHHHHHHHHH
Q 020341 178 VCPNDGFLEQLKMFE 192 (327)
Q Consensus 178 ~~pn~~f~~qL~~~e 192 (327)
-..|..++..|+.|.
T Consensus 139 ga~n~kql~~lekyr 153 (173)
T KOG2836|consen 139 GAINSKQLLYLEKYR 153 (173)
T ss_pred ccccHHHHHHHHHhC
Confidence 567776666666553
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.13 E-value=7e-10 Score=87.22 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=60.0
Q ss_pred ecCCCCCCcHHHhHHHHHHHHHHHHh----CCcEEEEcCCCCchhHHHHHHHHHHhc------CCCHHHHHHHHHhcCCc
Q 020341 108 PIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQSCES 177 (327)
Q Consensus 108 pi~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aG~sRS~tvv~AyLm~~~------~~s~~~Al~~vr~~Rp~ 177 (327)
++.|...++....|...++.++.... +++|+|||.+|.|||++++++|++... ..++.+++..+|..||.
T Consensus 9 ~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~ 88 (105)
T smart00012 9 GWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPG 88 (105)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Confidence 44444444443445555555555543 469999999999999999999998753 37899999999999998
Q ss_pred ccCCHHHHHHHH
Q 020341 178 VCPNDGFLEQLK 189 (327)
Q Consensus 178 ~~pn~~f~~qL~ 189 (327)
...+..+...+.
T Consensus 89 ~~~~~~q~~~~~ 100 (105)
T smart00012 89 MVQTFEQYLFLY 100 (105)
T ss_pred hCCcHHHHHHHH
Confidence 888776655443
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.13 E-value=7e-10 Score=87.22 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=60.0
Q ss_pred ecCCCCCCcHHHhHHHHHHHHHHHHh----CCcEEEEcCCCCchhHHHHHHHHHHhc------CCCHHHHHHHHHhcCCc
Q 020341 108 PIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQSCES 177 (327)
Q Consensus 108 pi~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aG~sRS~tvv~AyLm~~~------~~s~~~Al~~vr~~Rp~ 177 (327)
++.|...++....|...++.++.... +++|+|||.+|.|||++++++|++... ..++.+++..+|..||.
T Consensus 9 ~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~ 88 (105)
T smart00404 9 GWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPG 88 (105)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhh
Confidence 44444444443445555555555543 469999999999999999999998753 37899999999999998
Q ss_pred ccCCHHHHHHHH
Q 020341 178 VCPNDGFLEQLK 189 (327)
Q Consensus 178 ~~pn~~f~~qL~ 189 (327)
...+..+...+.
T Consensus 89 ~~~~~~q~~~~~ 100 (105)
T smart00404 89 MVQTFEQYLFLY 100 (105)
T ss_pred hCCcHHHHHHHH
Confidence 888776655443
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.08 E-value=4e-10 Score=91.23 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=54.9
Q ss_pred ccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020341 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
.+|.+.+|+++.....++..|++.|+++|||++...
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~-------------------------------------------- 38 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG-------------------------------------------- 38 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TT--------------------------------------------
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCC--------------------------------------------
Confidence 479999999999999999999999999999997410
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHH
Q 020341 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII 152 (327)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv 152 (327)
+.+.......+.......++.|.++|+.-.. .. .+.+....+.++.. .++||+||..|. ||.++-
T Consensus 39 E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-~~-~~~v~~f~~~l~~~--~~Pvl~hC~sG~-Ra~~l~ 103 (110)
T PF04273_consen 39 EEPGQPSSAEEAAAAEALGLQYVHIPVDGGA-IT-EEDVEAFADALESL--PKPVLAHCRSGT-RASALW 103 (110)
T ss_dssp STTT-T-HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHHHHHTT--TTSEEEE-SCSH-HHHHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCeEEEeecCCCC-CC-HHHHHHHHHHHHhC--CCCEEEECCCCh-hHHHHH
Confidence 0000011111233344568889999997532 22 22233333333332 469999999995 986654
No 20
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.08 E-value=8.8e-10 Score=92.48 Aligned_cols=71 Identities=27% Similarity=0.375 Sum_probs=59.6
Q ss_pred cHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHH-HHHHHHhcCCCHHHHHHHHHhcCCcccCCHHHHH
Q 020341 116 NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII-TAYLMRTEQLSSEGALESLRQSCESVCPNDGFLE 186 (327)
Q Consensus 116 ~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv-~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~ 186 (327)
.-..|....++|+++.-+.-++||||.+|+|||.+++ +|-|.....++..+..+.++..+|.+.||+..+.
T Consensus 75 p~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 75 PGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred CCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 3457899999999999888899999999999997654 3345566689999999999999999999987643
No 21
>PLN02727 NAD kinase
Probab=98.88 E-value=8.4e-09 Score=108.00 Aligned_cols=109 Identities=8% Similarity=0.102 Sum_probs=77.6
Q ss_pred CeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 020341 8 HLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPT 87 (327)
Q Consensus 8 ~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (327)
.+|+++.+.+.++++|.+.||++|||++.+. +...+
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~-------------------------------------------E~~q~- 297 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEI-------------------------------------------VKDNF- 297 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCC-------------------------------------------cCCCc-
Confidence 5899999999999999999999999997621 00001
Q ss_pred chhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 88 KLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 88 ~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
....++.+....++.|++||+.+...... +.++++.+++++.+ ..+||+||..|..|+++++++||.+..+..
T Consensus 298 -~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~sl-pkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 298 -YQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSDSS-KKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred -hhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHhhc-CCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 11123333445578899999876444432 33555566664422 569999999999999999999999876654
No 22
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.86 E-value=1.9e-08 Score=91.38 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=64.8
Q ss_pred cceEEEEEe-cCCCCCCcHHHhHHHHHHHHHHHHh---CCcEEEEcCCCCchhHHHHHHHHHHhc-----CCCHHHHHHH
Q 020341 100 LKLVRMTVP-IRDMESENLLDYLDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMRTE-----QLSSEGALES 170 (327)
Q Consensus 100 ~~i~~l~ip-i~D~~~~~l~~~~~~~~~fI~~~~~---~g~VLVHC~aG~sRS~tvv~AyLm~~~-----~~s~~~Al~~ 170 (327)
..+.++++. ..|...++-...|.+.++.++.... .++|+|||.+|+|||+++++++++... .+++.+++..
T Consensus 128 ~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 128 RTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred eEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345555554 3344444443445555555655543 469999999999999999999876543 6999999999
Q ss_pred HHhcCCcccCCHHHHHHHH
Q 020341 171 LRQSCESVCPNDGFLEQLK 189 (327)
Q Consensus 171 vr~~Rp~~~pn~~f~~qL~ 189 (327)
+|+.|+.+-.+..+...+.
T Consensus 208 iR~~R~~~v~~~~Qy~f~~ 226 (231)
T cd00047 208 LRSQRPGMVQTEEQYIFLY 226 (231)
T ss_pred HHhccccccCCHHHHHHHH
Confidence 9999999888877665554
No 23
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.85 E-value=1.7e-08 Score=87.18 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~v 171 (327)
++|||||.+|+.|+ .+++|.|+...|.+.++.++-.
T Consensus 125 ~p~l~HC~aGKDRT-G~~~alll~~lGV~~~~I~~DY 160 (164)
T PF13350_consen 125 GPVLFHCTAGKDRT-GVVAALLLSLLGVPDEDIIADY 160 (164)
T ss_dssp --EEEE-SSSSSHH-HHHHHHHHHHTT--HHHHHHHH
T ss_pred CcEEEECCCCCccH-HHHHHHHHHHcCCCHHHHHHHH
Confidence 69999999999999 4556777778899999887644
No 24
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.76 E-value=4.7e-08 Score=90.35 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=58.4
Q ss_pred CCCCCcHHHhHHHHHHHHHHHHh--CCcEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHhcCCcccCCHH
Q 020341 111 DMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDG 183 (327)
Q Consensus 111 D~~~~~l~~~~~~~~~fI~~~~~--~g~VLVHC~aG~sRS~tvv~AyLm~~-----~~~s~~~Al~~vr~~Rp~~~pn~~ 183 (327)
|...+.-...+.+.+..++.... .|+|+|||.+|+|||+++++++++.. ..+++.+++..||+.|+.+-.+..
T Consensus 168 d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~ 247 (258)
T smart00194 168 DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEE 247 (258)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHH
Confidence 44444233334444555555444 46999999999999999999987643 468999999999999999988887
Q ss_pred HHHHHH
Q 020341 184 FLEQLK 189 (327)
Q Consensus 184 f~~qL~ 189 (327)
++..+.
T Consensus 248 Qy~f~~ 253 (258)
T smart00194 248 QYIFLY 253 (258)
T ss_pred HHHHHH
Confidence 766553
No 25
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=1.7e-07 Score=75.71 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=78.4
Q ss_pred ccccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCC
Q 020341 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (327)
Q Consensus 3 ~~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
.+|++.|+|++.....|+..++.+|++.|||-+-. .| +
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPD-----------------gE-------------------------e 41 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPD-----------------GE-------------------------E 41 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCC-----------------CC-------------------------C
Confidence 46999999999999999999999999999999641 00 0
Q ss_pred CCCCcchhhhhhhccCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHh--CCcEEEEcCCCCchhHHHHHHHHHHhc
Q 020341 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRTE 160 (327)
Q Consensus 83 ~~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~--~g~VLVHC~aG~sRS~tvv~AyLm~~~ 160 (327)
.-.|.. -.+.......++.|.+||+.-.... ++.++-+.+++. +|+||.||..| -||.++ -+.--...
T Consensus 42 ~~QP~~--~~i~~aa~~aGl~y~~iPV~~~~iT------~~dV~~f~~Al~eaegPVlayCrsG-tRs~~l-y~~~~~~~ 111 (130)
T COG3453 42 PGQPGF--AAIAAAAEAAGLTYTHIPVTGGGIT------EADVEAFQRALDEAEGPVLAYCRSG-TRSLNL-YGLGELDG 111 (130)
T ss_pred CCCCCh--HHHHHHHHhcCCceEEeecCCCCCC------HHHHHHHHHHHHHhCCCEEeeecCC-chHHHH-HHHHHHhc
Confidence 011111 1223333455778999999763322 122333344433 57999999999 688443 22222456
Q ss_pred CCCHHHHHHHHHhc
Q 020341 161 QLSSEGALESLRQS 174 (327)
Q Consensus 161 ~~s~~~Al~~vr~~ 174 (327)
|++.+++.++=+..
T Consensus 112 gm~~de~~a~g~a~ 125 (130)
T COG3453 112 GMSRDEIEALGQAA 125 (130)
T ss_pred CCCHHHHHHHHHhh
Confidence 89999887765543
No 26
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.40 E-value=1.8e-06 Score=85.81 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=64.1
Q ss_pred eEEEEEec-CCCCCCcHHHhHHHHHHHHHHHHhC----------CcEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHHH
Q 020341 102 LVRMTVPI-RDMESENLLDYLDVCFDFIDRRRKE----------GGVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGALE 169 (327)
Q Consensus 102 i~~l~ipi-~D~~~~~l~~~~~~~~~fI~~~~~~----------g~VLVHC~aG~sRS~tvv~AyLm~~~-~~s~~~Al~ 169 (327)
+.++|+.- .|...++-...+...++.|+...+. +.++|||.+|+|||++++++|+|... ..++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 44555533 4544333223344445555443211 23589999999999999999999754 479999999
Q ss_pred HHHhcCCc-ccCCHHHHHHHHHHHHh
Q 020341 170 SLRQSCES-VCPNDGFLEQLKMFEEM 194 (327)
Q Consensus 170 ~vr~~Rp~-~~pn~~f~~qL~~~e~~ 194 (327)
.+|..|+. +--+..++..|......
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~ 528 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQ 528 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHH
Confidence 99999997 66678777887776654
No 27
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.34 E-value=2.9e-06 Score=76.46 Aligned_cols=119 Identities=12% Similarity=0.211 Sum_probs=81.2
Q ss_pred cccCCeEecCHHhHhcHhhhhcCCCeEEEEccccccccchhccccccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 020341 4 LVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSC 83 (327)
Q Consensus 4 ~I~~~LylG~~~~a~d~~~L~~~gIt~Vl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (327)
-|.++||-++++...++.+|+.++++.||+|+.++
T Consensus 62 ~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~--------------------------------------------- 96 (249)
T KOG1572|consen 62 MVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEP--------------------------------------------- 96 (249)
T ss_pred ccccceeecCCCCccchHHHHHhhhheEEEecCCC---------------------------------------------
Confidence 47889999999999999999999999999997521
Q ss_pred CCCcchhhhhhhccCCcceEEEEEecCCCC------CCcHH-HhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHH
Q 020341 84 LSPTKLLYSLEYAGKDLKLVRMTVPIRDME------SENLL-DYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYL 156 (327)
Q Consensus 84 ~~~~~~~y~~~~~~~~~~i~~l~ipi~D~~------~~~l~-~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyL 156 (327)
.+.+.+.| ....+|.+.+|-+...- ..++. +.+..+++++-.. .+-++||||..|..|+++||.+ |
T Consensus 97 yp~~nl~f-----~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~-~N~P~Lihc~rGkhRtg~lVgc-l 169 (249)
T KOG1572|consen 97 YPEENLNF-----LESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDK-RNYPILIHCKRGKHRTGCLVGC-L 169 (249)
T ss_pred CChHHHHH-----HHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhcc-cCCceEEecCCCCcchhhhHHH-H
Confidence 11222323 12235666667665332 23333 3355555552211 1239999999999999887755 4
Q ss_pred HHhcCCCHHHHHHHHHhc
Q 020341 157 MRTEQLSSEGALESLRQS 174 (327)
Q Consensus 157 m~~~~~s~~~Al~~vr~~ 174 (327)
=+..+|++.-.+...+..
T Consensus 170 Rklq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 170 RKLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHHhccchhHHHHHHHHh
Confidence 477899999998877654
No 28
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.28 E-value=4.5e-06 Score=75.05 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHH--hCCcEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHhcCCcccCCHHHHHHHH
Q 020341 121 LDVCFDFIDRRR--KEGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGFLEQLK 189 (327)
Q Consensus 121 ~~~~~~fI~~~~--~~g~VLVHC~aG~sRS~tvv~AyLm~~-----~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~ 189 (327)
+-..++.+.... ..++|+|||.+|.|||++++++.+|.. ...++.+++..+|+.|+.+-.+..++..+.
T Consensus 155 ~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 155 FLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCY 230 (235)
T ss_dssp HHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHH
T ss_pred hhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 334444444444 345899999999999999998887653 348999999999999999999987766554
No 29
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.23 E-value=8.5e-06 Score=77.45 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=42.2
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhcCCcccCCHHHH
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFL 185 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~ 185 (327)
|+|+|||.+|+|||+++++...+. ...+++.+++..+|+.|+..-.+..+.
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY 285 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQY 285 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHH
Confidence 699999999999999988776553 235789999999999999887776554
No 30
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.18 E-value=5.9e-06 Score=81.74 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=69.1
Q ss_pred EEecCCCCCCcHHHhHHHHHHHHHHHHhCC---cEEEEcCCCCchhHHHHHHHHHHhcCCC-HHHHHHHHHhcC---C--
Q 020341 106 TVPIRDMESENLLDYLDVCFDFIDRRRKEG---GVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLRQSC---E-- 176 (327)
Q Consensus 106 ~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g---~VLVHC~aG~sRS~tvv~AyLm~~~~~s-~~~Al~~vr~~R---p-- 176 (327)
.++..|...+.+ +.+..+++-++..+... -|.|||.+|++||+++++||||...... .++|+.++-.+| .
T Consensus 77 ~~~~~Dh~~P~L-~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~ 155 (434)
T KOG2283|consen 77 RFGFDDHNPPPL-ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKS 155 (434)
T ss_pred ecCCCCCCCCcH-HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhcccccc
Confidence 467778666654 55778888899988754 5899999999999999999999986665 899999999988 3
Q ss_pred cccCCHHHHHHHHHHHHh
Q 020341 177 SVCPNDGFLEQLKMFEEM 194 (327)
Q Consensus 177 ~~~pn~~f~~qL~~~e~~ 194 (327)
...--+.+.+.+.-|+.+
T Consensus 156 ~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 156 KGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred CCccCchhhHHHHHHHHH
Confidence 123345667888888875
No 31
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.16 E-value=1.3e-05 Score=76.40 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=45.1
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhcCCcccCCHHHHHHH
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQL 188 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL 188 (327)
|+|+|||.+|+|||+++++..++. ...++..+++..+|+.|+..-.+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 689999999999999998876433 346899999999999999988887665544
No 32
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.13 E-value=1.7e-05 Score=75.16 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=42.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhcCCcccCCHHHH
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFL 185 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~ 185 (327)
|+|+|||.+|+|||+++++...+. ...+++.+++..+|+.|+..-.+..+.
T Consensus 222 ~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY 277 (298)
T PHA02740 222 APIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDY 277 (298)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHH
Confidence 589999999999999988776543 345899999999999999888876554
No 33
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.10 E-value=2.1e-05 Score=75.38 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhcCCcccCCHHHHHH
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~~q 187 (327)
|+|+|||.+|+|||+++|+...+. ...+++.+++..+|..|+..-.+..+...
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F 305 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAF 305 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHH
Confidence 689999999999999998765433 24589999999999999988888765433
No 34
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.08 E-value=6.9e-06 Score=70.04 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=43.6
Q ss_pred cCCcceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHH
Q 020341 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMR 158 (327)
Q Consensus 97 ~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~ 158 (327)
....++.|++||+.|.. .+..+.|+..++|+...-+...+.+||.+|.||+.+..+.|.|.
T Consensus 88 ~~~~g~~Y~Ripitd~~-~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 88 VEGNGLRYYRIPITDHQ-APDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEeCCCcC-CCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999965 44566699999999998544489999999999998877777654
No 35
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.08 E-value=2.5e-05 Score=77.73 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=72.7
Q ss_pred EEEEecC--CCCCCcHHHhHHHHHHHHHHHHhC--C-cEEEEcCCCCchhHHHHHHHHHHhcCC----------------
Q 020341 104 RMTVPIR--DMESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQL---------------- 162 (327)
Q Consensus 104 ~l~ipi~--D~~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~aG~sRS~tvv~AyLm~~~~~---------------- 162 (327)
++++++. .....++...|+.++.||...+.+ + +|||+|..|...|++|++|.|+..+..
T Consensus 341 ~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~ 420 (451)
T PF04179_consen 341 YLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKD 420 (451)
T ss_pred EEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHH
Confidence 4555554 355667889999999999999887 5 899999999999999999999987653
Q ss_pred CHHHHHHHHHhcCCcccCCHHHHHHHHHH
Q 020341 163 SSEGALESLRQSCESVCPNDGFLEQLKMF 191 (327)
Q Consensus 163 s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~ 191 (327)
...+-|.+|.+.+|.++|.++.++++..|
T Consensus 421 ~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 421 DIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 23457788889999999999999988765
No 36
>PHA02738 hypothetical protein; Provisional
Probab=97.98 E-value=4.8e-05 Score=72.86 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=43.0
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHH-----hcCCCHHHHHHHHHhcCCcccCCHHHHHH
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~-----~~~~s~~~Al~~vr~~Rp~~~pn~~f~~q 187 (327)
|+|+|||.+|+|||+++++.-++. ...+++.+++..+|+.|+..-.+..+...
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 589999999999999987665432 23589999999999999988888766543
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.79 E-value=0.00014 Score=67.18 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccCCHHHHHHHHH
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKM 190 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~ 190 (327)
+++||+||.+|..|++.+++.|++...++....+-.+++.-++......+-..+...
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~ 192 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSE 192 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhh
Confidence 379999999999999999988888886666667777777777655555533344443
No 38
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.73 E-value=0.00012 Score=77.68 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=57.4
Q ss_pred ecCCCCCCcHHHhHHHHHHHHHHHHhC-C-cEEEEcCCCCchhHHHHHHHHHH----h-cCCCHHHHHHHHHhcCCcccC
Q 020341 108 PIRDMESENLLDYLDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIITAYLMR----T-EQLSSEGALESLRQSCESVCP 180 (327)
Q Consensus 108 pi~D~~~~~l~~~~~~~~~fI~~~~~~-g-~VLVHC~aG~sRS~tvv~AyLm~----~-~~~s~~~Al~~vr~~Rp~~~p 180 (327)
.+.|...++-.++|-..++.|+..+.. + +|||||.||+|||++++++=+|. . ..+.+-+.+..+|..|-.+-+
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence 344555555566665555556555554 5 89999999999999887554433 2 458888999999999988888
Q ss_pred CHHHHHH
Q 020341 181 NDGFLEQ 187 (327)
Q Consensus 181 n~~f~~q 187 (327)
+..+...
T Consensus 1115 T~~QYkF 1121 (1144)
T KOG0792|consen 1115 TLSQYKF 1121 (1144)
T ss_pred chHHhhH
Confidence 8776543
No 39
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.68 E-value=8.6e-05 Score=72.36 Aligned_cols=56 Identities=18% Similarity=0.452 Sum_probs=42.7
Q ss_pred hCCcEEEEcCCCCchhHHHH-HHHHHH---hc----CCCHHHHHHHHHhcCCcccCCHHHHHHH
Q 020341 133 KEGGVLVHCFAGVSRSAAII-TAYLMR---TE----QLSSEGALESLRQSCESVCPNDGFLEQL 188 (327)
Q Consensus 133 ~~g~VLVHC~aG~sRS~tvv-~AyLm~---~~----~~s~~~Al~~vr~~Rp~~~pn~~f~~qL 188 (327)
+.|+|.|||.||+||++|++ +-.||. .. .++....+.+||..|....-...+.+.+
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFI 513 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHH
Confidence 45899999999999999954 444553 33 3789999999999998776666554443
No 40
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.48 E-value=0.00014 Score=66.69 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=46.3
Q ss_pred ceEEEEEe-cCCCCCCcHHHhHHHHHHHHHHHH----hCCcEEEEcCCCCchhHHHHHHH-HHHhcCCC-----------
Q 020341 101 KLVRMTVP-IRDMESENLLDYLDVCFDFIDRRR----KEGGVLVHCFAGVSRSAAIITAY-LMRTEQLS----------- 163 (327)
Q Consensus 101 ~i~~l~ip-i~D~~~~~l~~~~~~~~~fI~~~~----~~g~VLVHC~aG~sRS~tvv~Ay-Lm~~~~~s----------- 163 (327)
.+.|++++ ..|...+++.+ ..++++... ..|+++|||.||+||++|+++.- ||+...-+
T Consensus 184 ~Ihhf~y~nW~D~~~p~i~s----l~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~ 259 (302)
T COG5599 184 KIHHFQYINWVDFNVPDIRS----LTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQ 259 (302)
T ss_pred EEEEEEecCccccCCcCHHH----HHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhh
Confidence 34454443 45666665544 345555443 44699999999999999977655 44432211
Q ss_pred --HHHHHHHHHhcCCcccCCHH
Q 020341 164 --SEGALESLRQSCESVCPNDG 183 (327)
Q Consensus 164 --~~~Al~~vr~~Rp~~~pn~~ 183 (327)
..+.+..+|+.|...--|..
T Consensus 260 D~if~iV~~LRsQRmkmVQn~~ 281 (302)
T COG5599 260 DLIFQIVLSLRSQRMKMVQNKT 281 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHhHH
Confidence 23455566666654444433
No 41
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.43 E-value=0.0004 Score=67.55 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCC
Q 020341 121 LDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 196 (327)
Q Consensus 121 ~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~ 196 (327)
...+-.|++.....+ =|+|||.+|.+|++-++++|||...+++..+|++.+...||...--...+..|...+.--.
T Consensus 110 v~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 110 VKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred HHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 334445666555566 4999999999999999999999999999999999999999877666777777776665443
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.96 E-value=0.0029 Score=62.10 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCcEEEEcCCCCchhHHHHHHHH-HHh--c---CCCHHHHHHHHHhcCCcccCCHHHH
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYL-MRT--E---QLSSEGALESLRQSCESVCPNDGFL 185 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyL-m~~--~---~~s~~~Al~~vr~~Rp~~~pn~~f~ 185 (327)
.++++|||.+|+||++|+++... +.. . ..+..+.+..+|..|+.+..+..+.
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy 356 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQY 356 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHH
Confidence 46999999999999999986552 222 1 2458888888999988777766554
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.0028 Score=60.76 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHH-HHHhcC----CCHHHHHHHHHhcCCcccCCHHHHHHHH
Q 020341 134 EGGVLVHCFAGVSRSAAIITAY-LMRTEQ----LSSEGALESLRQSCESVCPNDGFLEQLK 189 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~Ay-Lm~~~~----~s~~~Al~~vr~~Rp~~~pn~~f~~qL~ 189 (327)
.++++|||.||++|++|+++.- |++..+ .+.-..+..+|..|+..-+|..++-.|.
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~ 347 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLH 347 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHH
Confidence 3589999999999999987654 444333 4566677778889998888876654444
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.26 E-value=0.1 Score=54.03 Aligned_cols=79 Identities=20% Similarity=0.361 Sum_probs=49.6
Q ss_pred ceEEEEEecCCCCCCcHHHhHHHHHHHHHHHHh--CC---cEEEEcCCCCchhHHHHHHHH-HHh-----cCCCHHHHHH
Q 020341 101 KLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EG---GVLVHCFAGVSRSAAIITAYL-MRT-----EQLSSEGALE 169 (327)
Q Consensus 101 ~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~--~g---~VLVHC~aG~sRS~tvv~AyL-m~~-----~~~s~~~Al~ 169 (327)
.|+++.+| +...+.-.. ..++|-.+..+ .| +|+|||..|-||+++-++.=+ +.+ ..++....++
T Consensus 894 QFHfLSWp--~egvPasar---slLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlE 968 (1004)
T KOG0793|consen 894 QFHFLSWP--DEGVPASAR---SLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLE 968 (1004)
T ss_pred eeeeeccc--ccCCccchH---HHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHH
Confidence 35555554 434443333 34555444332 23 699999999999998553322 222 2478899999
Q ss_pred HHHhcCCcccCCHHH
Q 020341 170 SLRQSCESVCPNDGF 184 (327)
Q Consensus 170 ~vr~~Rp~~~pn~~f 184 (327)
++|..||.+--...+
T Consensus 969 HlRDQR~GmVaTkdQ 983 (1004)
T KOG0793|consen 969 HLRDQRPGMVATKDQ 983 (1004)
T ss_pred HHhhcCCcceeehhh
Confidence 999999976555433
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=94.12 E-value=0.19 Score=42.45 Aligned_cols=66 Identities=23% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCCCCCcHHHhHHHHHHHHHHHHhC----CcEEEEcCCCCchh----HHHHHHHHHHhcCCCHHHHHHHHHhcCC
Q 020341 110 RDMESENLLDYLDVCFDFIDRRRKE----GGVLVHCFAGVSRS----AAIITAYLMRTEQLSSEGALESLRQSCE 176 (327)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~~----g~VLVHC~aG~sRS----~tvv~AyLm~~~~~s~~~Al~~vr~~Rp 176 (327)
.|.+.-++.. +-....-+++.++. ++.+|||...-.+. +.++.||+|...+|++++|++-+...-|
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5667777655 33444455555553 68999998876553 6788999999999999999999987754
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.75 E-value=0.11 Score=56.35 Aligned_cols=62 Identities=24% Similarity=0.429 Sum_probs=42.6
Q ss_pred HHHHHHHHHHH-----hCCcEEEEcCCCCchhHHHHHHH-----HHHhcCCCHHHHHHHHHhcCCcccCCHH
Q 020341 122 DVCFDFIDRRR-----KEGGVLVHCFAGVSRSAAIITAY-----LMRTEQLSSEGALESLRQSCESVCPNDG 183 (327)
Q Consensus 122 ~~~~~fI~~~~-----~~g~VLVHC~aG~sRS~tvv~Ay-----Lm~~~~~s~~~Al~~vr~~Rp~~~pn~~ 183 (327)
-..++|+++.. ..|+++|||.||+|||+++++-= ++.....+.-.-+..+|..|+...-...
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~e 784 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEE 784 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHH
Confidence 35577777764 35899999999999999865322 2223346777777888888876554433
No 47
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=0.17 Score=51.60 Aligned_cols=31 Identities=39% Similarity=0.637 Sum_probs=22.4
Q ss_pred HHHHHh-CC-cEEEEcCCCCchhHHHH-HHHHHH
Q 020341 128 IDRRRK-EG-GVLVHCFAGVSRSAAII-TAYLMR 158 (327)
Q Consensus 128 I~~~~~-~g-~VLVHC~aG~sRS~tvv-~AyLm~ 158 (327)
|...++ ++ +|||||.-|.+|++-++ +|.||.
T Consensus 366 Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 366 IADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 333344 44 79999999999998865 565664
No 48
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.53 E-value=0.21 Score=54.22 Aligned_cols=50 Identities=20% Similarity=0.428 Sum_probs=37.8
Q ss_pred hCCcEEEEcCCCCchhHHHHHHHHHHh----c-CCCHHHHHHHHHhcCCcccCCH
Q 020341 133 KEGGVLVHCFAGVSRSAAIITAYLMRT----E-QLSSEGALESLRQSCESVCPND 182 (327)
Q Consensus 133 ~~g~VLVHC~aG~sRS~tvv~AyLm~~----~-~~s~~~Al~~vr~~Rp~~~pn~ 182 (327)
..+++.|||.+|.+||++++++-++.. . -++.=++.+.+|..||...-..
T Consensus 1017 ~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~ 1071 (1087)
T KOG4228|consen 1017 ADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTS 1071 (1087)
T ss_pred CCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcH
Confidence 357999999999999999887665432 2 2677788888888888554433
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=84.39 E-value=4.5 Score=31.22 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
+.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 61 ~~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 61 GKKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred CCEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 34899999998 68854 33344 555654
No 50
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=82.97 E-value=2.4 Score=43.54 Aligned_cols=33 Identities=36% Similarity=0.506 Sum_probs=23.2
Q ss_pred HHHHHHHh-CC-cEEEEcCCCCchhHHHH-HHHHHH
Q 020341 126 DFIDRRRK-EG-GVLVHCFAGVSRSAAII-TAYLMR 158 (327)
Q Consensus 126 ~fI~~~~~-~g-~VLVHC~aG~sRS~tvv-~AyLm~ 158 (327)
.+|.+++. +| .|||||.-|.+|+.-|+ +|=||.
T Consensus 334 ~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 334 AEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 45555666 45 89999999999996655 333443
No 51
>PLN02160 thiosulfate sulfurtransferase
Probab=81.92 E-value=5.9 Score=32.89 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
.+|+|||..| .||... +.++...|++
T Consensus 82 ~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 82 DDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred CcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 3899999999 688543 3333555654
No 52
>PRK01415 hypothetical protein; Validated
Probab=80.44 E-value=3.3 Score=38.30 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=18.9
Q ss_pred hCCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 133 KEGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 133 ~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
++.+|+++|.+| .|| ..++++|. ..|..
T Consensus 170 k~k~Iv~yCtgG-iRs-~kAa~~L~-~~Gf~ 197 (247)
T PRK01415 170 KGKKIAMVCTGG-IRC-EKSTSLLK-SIGYD 197 (247)
T ss_pred CCCeEEEECCCC-hHH-HHHHHHHH-HcCCC
Confidence 344899999999 487 55556664 44553
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=80.28 E-value=3.9 Score=39.82 Aligned_cols=20 Identities=45% Similarity=0.815 Sum_probs=15.7
Q ss_pred hCC-cEEEEcCCCCchhHHHH
Q 020341 133 KEG-GVLVHCFAGVSRSAAII 152 (327)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~tvv 152 (327)
.+| .|||||..|.+|++-|+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 456 89999999999995544
No 54
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=73.37 E-value=0.97 Score=31.22 Aligned_cols=18 Identities=28% Similarity=0.737 Sum_probs=14.8
Q ss_pred ccccccccceeeecCccc
Q 020341 255 AYRCKKCRRVVALQENVV 272 (327)
Q Consensus 255 ~yrCrKCRr~L~~~~~i~ 272 (327)
.+||+.|.++||....+.
T Consensus 4 eiRC~~CnklLa~~g~~~ 21 (51)
T PF10122_consen 4 EIRCGHCNKLLAKAGEVI 21 (51)
T ss_pred ceeccchhHHHhhhcCcc
Confidence 589999999999965444
No 55
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=68.95 E-value=1.6 Score=34.00 Aligned_cols=19 Identities=26% Similarity=0.828 Sum_probs=18.3
Q ss_pred ccccccccceeeecCcccc
Q 020341 255 AYRCKKCRRVVALQENVVD 273 (327)
Q Consensus 255 ~yrCrKCRr~L~~~~~i~~ 273 (327)
+|.|++|+..|+.+.+++.
T Consensus 2 vf~C~~C~t~l~ds~~lvs 20 (96)
T PF03226_consen 2 VFQCKNCKTILADSNELVS 20 (96)
T ss_pred EEECCCCCCCcCCHHHhee
Confidence 6999999999999999999
No 56
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=62.79 E-value=7.7 Score=36.24 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchhHHHH
Q 020341 136 GVLVHCFAGVSRSAAII 152 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv 152 (327)
.|-|=|.+|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 38899999999999886
No 57
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=62.19 E-value=9.4 Score=29.41 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
+.+++|+|..| .|| ..++.+|... |+
T Consensus 61 ~~~ivv~C~~G-~rS-~~aa~~L~~~-G~ 86 (110)
T COG0607 61 DDPIVVYCASG-VRS-AAAAAALKLA-GF 86 (110)
T ss_pred CCeEEEEeCCC-CCh-HHHHHHHHHc-CC
Confidence 34899999999 488 4455555443 53
No 58
>smart00400 ZnF_CHCC zinc finger.
Probab=62.14 E-value=9.2 Score=26.48 Aligned_cols=32 Identities=28% Similarity=0.602 Sum_probs=24.5
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 020341 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (327)
Q Consensus 138 LVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~v 171 (327)
..||.+- ++++.+ +.++|+.+|+++.+|++.+
T Consensus 23 ~~~Cf~c-g~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFGC-GAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeCC-CCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 5788853 555554 6788899999999999875
No 59
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=60.43 E-value=17 Score=34.26 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhHHHH
Q 020341 136 GVLVHCFAGVSRSAAII 152 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv 152 (327)
.|-|=|++|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 48899999999998887
No 60
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=59.32 E-value=17 Score=34.39 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHH----hCCc----EEEEcCCCCchhHHHH
Q 020341 120 YLDVCFDFIDRRR----KEGG----VLVHCFAGVSRSAAII 152 (327)
Q Consensus 120 ~~~~~~~fI~~~~----~~g~----VLVHC~aG~sRS~tvv 152 (327)
.++.+.++++..+ ++|+ |-|=|++|..||++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 223 FLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 3444444444433 4563 8899999999998886
No 61
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=59.30 E-value=14 Score=35.41 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHH
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFE 192 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e 192 (327)
.+|+|+|..| .|| ..+++||.. .|.+ ......-|+..-++.+.
T Consensus 172 k~IvvyC~~G-~Rs-~~aa~~L~~-~Gf~------------~V~~L~GGi~~w~~~~~ 214 (314)
T PRK00142 172 KKVVMYCTGG-IRC-EKASAWMKH-EGFK------------EVYQLEGGIITYGEDPE 214 (314)
T ss_pred CeEEEECCCC-cHH-HHHHHHHHH-cCCC------------cEEEecchHHHHHHhhc
Confidence 4899999999 588 455566544 4654 12334556655555444
No 62
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=59.25 E-value=21 Score=27.78 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
.+|+|+|..|. || +.+ +.+++..|+
T Consensus 67 ~~ivv~C~~G~-rs-~~a-~~~L~~~G~ 91 (109)
T cd01533 67 TPIVVNCAGRT-RS-IIG-AQSLINAGL 91 (109)
T ss_pred CeEEEECCCCc-hH-HHH-HHHHHHCCC
Confidence 38999999995 87 333 344455566
No 63
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=56.56 E-value=54 Score=26.41 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=13.9
Q ss_pred hhhhcCCCeEEEEccc
Q 020341 21 LQNGSSEITHMLSVLS 36 (327)
Q Consensus 21 ~~L~~~gIt~Vl~l~~ 36 (327)
..|+..||+.||+|..
T Consensus 7 ~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHCCCeEEEEECC
Confidence 4688999999999976
No 64
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=56.50 E-value=2.2 Score=23.74 Aligned_cols=20 Identities=25% Similarity=0.740 Sum_probs=16.8
Q ss_pred cccccccceeeecCccccCC
Q 020341 256 YRCKKCRRVVALQENVVDHI 275 (327)
Q Consensus 256 yrCrKCRr~L~~~~~i~~H~ 275 (327)
|.|..|.+...+..++..|.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEEESSHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHH
Confidence 78999999998888877763
No 65
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=55.62 E-value=17 Score=25.24 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhc
Q 020341 149 AAIITAYLMRTEQLSSEGALESLRQS 174 (327)
Q Consensus 149 ~tvv~AyLm~~~~~s~~~Al~~vr~~ 174 (327)
..-+.+.||..+|++.++|+.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44567889999999999999999864
No 66
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=53.09 E-value=62 Score=24.57 Aligned_cols=58 Identities=17% Similarity=0.374 Sum_probs=29.0
Q ss_pred EEEecCCC---CCCcHHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHH---HHHHHhcCCC
Q 020341 105 MTVPIRDM---ESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIIT---AYLMRTEQLS 163 (327)
Q Consensus 105 l~ipi~D~---~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~---AyLm~~~~~s 163 (327)
.++|.... ........+.............+ .|+|+|..|. |+...+. ++.+...|++
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 45565332 23333333433333333333445 6999997774 5544433 3445555654
No 67
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=52.75 E-value=23 Score=27.03 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
..+|+|+|..| .||. .++.. +...|++
T Consensus 61 ~~~ivv~C~~G-~rs~-~aa~~-L~~~G~~ 87 (100)
T cd01523 61 DQEVTVICAKE-GSSQ-FVAEL-LAERGYD 87 (100)
T ss_pred CCeEEEEcCCC-CcHH-HHHHH-HHHcCce
Confidence 34899999999 4874 33343 3455664
No 68
>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]
Probab=51.50 E-value=5.9 Score=32.47 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=21.3
Q ss_pred CCccccccccceeeecCccccCCC
Q 020341 253 TPAYRCKKCRRVVALQENVVDHIP 276 (327)
Q Consensus 253 ~~~yrCrKCRr~L~~~~~i~~H~~ 276 (327)
...|+|+.|+.-|+...+++.+.-
T Consensus 13 ~~~y~C~~C~thla~~~dliSksf 36 (122)
T KOG3399|consen 13 HRLYSCAHCKTHLARHDDLISKSF 36 (122)
T ss_pred CceEeccCCcccccchhhcccccc
Confidence 358999999999999999998864
No 69
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=49.37 E-value=25 Score=26.57 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
+.+|+|+|..|. |+.+.-++..+...|.+
T Consensus 50 ~~~ivl~c~~G~-~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 50 DTPIVVYGEGGG-EDLAPRAARRLSELGYT 78 (92)
T ss_pred CCeEEEEeCCCC-chHHHHHHHHHHHcCcc
Confidence 348999999985 44333334444555543
No 70
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=49.00 E-value=37 Score=29.02 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
.+|+|.|..|..||.. ++++++..|.+
T Consensus 117 ~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 117 RPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3899999998777764 45566666654
No 71
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=47.68 E-value=67 Score=26.51 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=38.1
Q ss_pred ceEEEEEecCCCCCCc-HHHhHHHHHHHHHHHHhCCc--EEEEcCCCCchhHHHHHHHHHHhcC
Q 020341 101 KLVRMTVPIRDMESEN-LLDYLDVCFDFIDRRRKEGG--VLVHCFAGVSRSAAIITAYLMRTEQ 161 (327)
Q Consensus 101 ~i~~l~ipi~D~~~~~-l~~~~~~~~~fI~~~~~~g~--VLVHC~aG~sRS~tvv~AyLm~~~~ 161 (327)
.+.-..+|++|...+. ....++.+.+.|.+..+++. .+.-|.+|--++-++.++|.+..+|
T Consensus 53 ~i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 53 EVHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 3444445666644333 34445555555666666665 4666888866778888888888777
No 72
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=47.60 E-value=46 Score=25.41 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~vv~~c~~g-~rs~~~-~~~l-~~~G~~ 84 (101)
T cd01528 59 KDIVVLCHHG-GRSMQV-AQWL-LRQGFE 84 (101)
T ss_pred CeEEEEeCCC-chHHHH-HHHH-HHcCCc
Confidence 4899999998 587443 3334 445654
No 73
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=47.19 E-value=32 Score=27.23 Aligned_cols=26 Identities=23% Similarity=-0.109 Sum_probs=17.4
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
+|+|+|..| +++++.++. +++..|++
T Consensus 81 ~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred EEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 799999998 555555544 44555654
No 74
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=46.96 E-value=5.2 Score=28.59 Aligned_cols=12 Identities=50% Similarity=1.281 Sum_probs=9.9
Q ss_pred CCccccccccce
Q 020341 253 TPAYRCKKCRRV 264 (327)
Q Consensus 253 ~~~yrCrKCRr~ 264 (327)
...|||.|||+.
T Consensus 36 ~~I~Rc~~CRk~ 47 (61)
T COG2888 36 VEIYRCAKCRKL 47 (61)
T ss_pred eeeehhhhHHHc
Confidence 468999999984
No 75
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=44.53 E-value=45 Score=26.95 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=18.1
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
+|+|.|..|-.||..+ +++++..|.+
T Consensus 88 ~vvvyC~~~G~rs~~a--~~~L~~~G~~ 113 (128)
T cd01520 88 KLLIYCARGGMRSQSL--AWLLESLGID 113 (128)
T ss_pred eEEEEeCCCCccHHHH--HHHHHHcCCc
Confidence 8999998554687533 3777777763
No 76
>PRK05320 rhodanese superfamily protein; Provisional
Probab=44.19 E-value=36 Score=31.54 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
..+|+++|..| .|| ..++++|.. .|++
T Consensus 175 dk~IvvyC~~G-~Rs-~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 175 GKTVVSFCTGG-IRC-EKAAIHMQE-VGID 201 (257)
T ss_pred CCeEEEECCCC-HHH-HHHHHHHHH-cCCc
Confidence 44899999999 487 555566643 4553
No 77
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=43.00 E-value=4.7 Score=28.20 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=13.7
Q ss_pred ccccccccceeeecCcc
Q 020341 255 AYRCKKCRRVVALQENV 271 (327)
Q Consensus 255 ~yrCrKCRr~L~~~~~i 271 (327)
..||++|..+|+..+..
T Consensus 4 tiRC~~CnKlLa~a~~~ 20 (60)
T COG4416 4 TIRCAKCNKLLAEAEGQ 20 (60)
T ss_pred eeehHHHhHHHHhcccc
Confidence 57999999999876544
No 78
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=42.37 E-value=26 Score=27.33 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=25.0
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcC
Q 020341 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSC 175 (327)
Q Consensus 138 LVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~R 175 (327)
..||.+ -+.++-+ +.++|...++++.+|++++.+.-
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHHh
Confidence 789986 4677655 67789999999999999987653
No 79
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=41.77 E-value=11 Score=27.64 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=13.0
Q ss_pred ccccccccceeeecCccccCC
Q 020341 255 AYRCKKCRRVVALQENVVDHI 275 (327)
Q Consensus 255 ~yrCrKCRr~L~~~~~i~~H~ 275 (327)
.||| +|+|.|......-.|.
T Consensus 3 ifrC-~Cgr~lya~e~~kTkk 22 (68)
T PF09082_consen 3 IFRC-DCGRYLYAKEGAKTKK 22 (68)
T ss_dssp EEEE-TTS--EEEETT-SEEE
T ss_pred EEEe-cCCCEEEecCCcceeE
Confidence 6899 7999988877766654
No 80
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=41.05 E-value=34 Score=25.85 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 57 ~~iv~~c~~G-~rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 57 ARIVLADDDG-VRADM-TASWL-AQMGWE 82 (95)
T ss_pred CeEEEECCCC-ChHHH-HHHHH-HHcCCE
Confidence 4899999999 47743 33444 555653
No 81
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=40.91 E-value=5.7 Score=22.96 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=18.1
Q ss_pred ccccccccceeeecCccccCC
Q 020341 255 AYRCKKCRRVVALQENVVDHI 275 (327)
Q Consensus 255 ~yrCrKCRr~L~~~~~i~~H~ 275 (327)
.|.|..|.+..-+...++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~ 21 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHK 21 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHH
T ss_pred CCCCCccCCccCChhHHHHHh
Confidence 489999999998888888885
No 82
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=37.80 E-value=1.3e+02 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCCCHH
Q 020341 121 LDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (327)
Q Consensus 121 ~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~ 165 (327)
++.+.++|+...+.|.-++-....-+||..-.+..| ...|++..
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~ 59 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVD 59 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCC
Confidence 678899999999988544445666688877777777 66786543
No 83
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=36.37 E-value=16 Score=31.18 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=11.6
Q ss_pred CCccccccccceeee
Q 020341 253 TPAYRCKKCRRVVAL 267 (327)
Q Consensus 253 ~~~yrCrKCRr~L~~ 267 (327)
+-+|||+||+-.|-.
T Consensus 138 g~~YrC~~C~gkL~~ 152 (156)
T COG3091 138 GEVYRCGKCGGKLVF 152 (156)
T ss_pred cceEEeccCCceEEe
Confidence 338999999987743
No 84
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=36.08 E-value=10 Score=27.03 Aligned_cols=11 Identities=55% Similarity=1.283 Sum_probs=9.4
Q ss_pred Cccccccccce
Q 020341 254 PAYRCKKCRRV 264 (327)
Q Consensus 254 ~~yrCrKCRr~ 264 (327)
..+||.|||+.
T Consensus 35 ~I~RC~~CRk~ 45 (59)
T PRK14890 35 IIYRCEKCRKQ 45 (59)
T ss_pred eEeechhHHhc
Confidence 48999999984
No 85
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=35.17 E-value=15 Score=23.48 Aligned_cols=10 Identities=60% Similarity=1.424 Sum_probs=8.4
Q ss_pred CCcccccccc
Q 020341 253 TPAYRCKKCR 262 (327)
Q Consensus 253 ~~~yrCrKCR 262 (327)
--.||||.||
T Consensus 27 ~qryrC~~C~ 36 (36)
T PF03811_consen 27 HQRYRCKDCR 36 (36)
T ss_pred CEeEecCcCC
Confidence 4589999997
No 86
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=34.83 E-value=1e+02 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=12.9
Q ss_pred CcEEEEcCCCCchhHHH
Q 020341 135 GGVLVHCFAGVSRSAAI 151 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tv 151 (327)
..|+|||..|..||+..
T Consensus 67 ~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 67 KLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CEEEEECCCCCcccHHH
Confidence 37999999866787544
No 87
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=33.56 E-value=20 Score=22.75 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=11.0
Q ss_pred CCcccccccccee
Q 020341 253 TPAYRCKKCRRVV 265 (327)
Q Consensus 253 ~~~yrCrKCRr~L 265 (327)
-+.|+|++|+...
T Consensus 3 ~Y~y~C~~Cg~~f 15 (41)
T smart00834 3 IYEYRCEDCGHTF 15 (41)
T ss_pred CEEEEcCCCCCEE
Confidence 4789999999965
No 88
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=32.82 E-value=99 Score=22.92 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
.+|+|+|..| .||.. + +.+++..|.
T Consensus 57 ~~ivv~c~~g-~~s~~-a-~~~l~~~G~ 81 (96)
T cd01444 57 RPVVVYCYHG-NSSAQ-L-AQALREAGF 81 (96)
T ss_pred CCEEEEeCCC-ChHHH-H-HHHHHHcCC
Confidence 3899999977 46533 3 444555564
No 89
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=32.73 E-value=2e+02 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.400 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH---HhCCcEEEEcCCCCchhHHHHHHHHH
Q 020341 121 LDVCFDFIDRR---RKEGGVLVHCFAGVSRSAAIITAYLM 157 (327)
Q Consensus 121 ~~~~~~fI~~~---~~~g~VLVHC~aG~sRS~tvv~AyLm 157 (327)
|.+.-.+|.+. ++..+|+..|++|+ |- =-+.|||.
T Consensus 156 FrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~ 193 (308)
T COG1054 156 FREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMK 193 (308)
T ss_pred hhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHH
Confidence 44444444444 33448999999998 74 34445543
No 90
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=32.59 E-value=42 Score=31.55 Aligned_cols=27 Identities=44% Similarity=0.442 Sum_probs=19.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 020341 142 FAGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 142 ~aG~sRS~tvv~AyLm~~~~~s~~~Al~~ 170 (327)
.=|+|||++.+.|-|+ .|++.++|.++
T Consensus 165 iPGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 165 IPGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred ccCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 3599999887766553 38888888764
No 91
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=31.98 E-value=51 Score=30.68 Aligned_cols=28 Identities=43% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 020341 142 FAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (327)
Q Consensus 142 ~aG~sRS~tvv~AyLm~~~~~s~~~Al~~v 171 (327)
.=|+|||++.+++-+ ..|++.++|.++-
T Consensus 159 ~PGiSRSG~Ti~~~l--~~G~~r~~A~~fS 186 (259)
T PF02673_consen 159 IPGISRSGATITAGL--LLGLDREEAARFS 186 (259)
T ss_pred CCCcChHHHHHHHHH--HCCCCHHHHHHHH
Confidence 569999988777755 3488888887753
No 92
>smart00355 ZnF_C2H2 zinc finger.
Probab=31.86 E-value=9.3 Score=20.97 Aligned_cols=20 Identities=30% Similarity=0.858 Sum_probs=15.9
Q ss_pred cccccccceeeecCccccCC
Q 020341 256 YRCKKCRRVVALQENVVDHI 275 (327)
Q Consensus 256 yrCrKCRr~L~~~~~i~~H~ 275 (327)
|.|..|........++..|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~ 20 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHM 20 (26)
T ss_pred CCCCCCcchhCCHHHHHHHH
Confidence 67999998887777777764
No 93
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=31.71 E-value=51 Score=28.26 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=49.5
Q ss_pred HHHHHHHHHH--hC-CcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCcC
Q 020341 123 VCFDFIDRRR--KE-GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVN 199 (327)
Q Consensus 123 ~~~~fI~~~~--~~-g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL~~~e~~~~~~~ 199 (327)
.+.++|.... .. .+|+|=|-.|.+=.-++++|-.+...|+...- --..+.-..+..+..++..+++++.++.
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 3455666666 33 48999999998888778888777777876321 1122334667889999999999987654
Q ss_pred C
Q 020341 200 R 200 (327)
Q Consensus 200 ~ 200 (327)
.
T Consensus 86 ~ 86 (169)
T PF03853_consen 86 E 86 (169)
T ss_dssp S
T ss_pred e
Confidence 3
No 94
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=31.22 E-value=77 Score=25.12 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
.+|+|+|..| .||..++ . .+...|.
T Consensus 65 ~~ivv~C~~G-~rs~~aa-~-~L~~~G~ 89 (117)
T cd01522 65 RPVLLLCRSG-NRSIAAA-E-AAAQAGF 89 (117)
T ss_pred CeEEEEcCCC-ccHHHHH-H-HHHHCCC
Confidence 3899999998 5885442 3 3345454
No 95
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=30.88 E-value=11 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.614 Sum_probs=13.8
Q ss_pred cccccccceeeecCccccCC
Q 020341 256 YRCKKCRRVVALQENVVDHI 275 (327)
Q Consensus 256 yrCrKCRr~L~~~~~i~~H~ 275 (327)
|.|..|.....+...+..|.
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHH
Confidence 68999999888777776663
No 96
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=30.79 E-value=2e+02 Score=26.02 Aligned_cols=53 Identities=32% Similarity=0.385 Sum_probs=36.5
Q ss_pred CCCCcHHHhHHHHHHHHHHHH----hCC-cEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 020341 112 MESENLLDYLDVCFDFIDRRR----KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 112 ~~~~~l~~~~~~~~~fI~~~~----~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~ 170 (327)
...+.+...++.++.|.++.+ ..| .|+|+|++..-| +++|+..|++.++....
T Consensus 129 p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l~g~s~~~i~~~ 186 (214)
T KOG0235|consen 129 PDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHLEGISDEAIKEL 186 (214)
T ss_pred CCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHHhcCCHhhhhhe
Confidence 345667777888888887754 356 799999874333 45677778888776544
No 97
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.52 E-value=26 Score=22.98 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=10.7
Q ss_pred CCcccccccccee
Q 020341 253 TPAYRCKKCRRVV 265 (327)
Q Consensus 253 ~~~yrCrKCRr~L 265 (327)
-+.|+|.+|+...
T Consensus 3 ~Yey~C~~Cg~~f 15 (42)
T PF09723_consen 3 IYEYRCEECGHEF 15 (42)
T ss_pred CEEEEeCCCCCEE
Confidence 4789999999754
No 98
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=29.48 E-value=1.3e+02 Score=25.10 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=11.9
Q ss_pred cEEEEcCCCCchhHH
Q 020341 136 GVLVHCFAGVSRSAA 150 (327)
Q Consensus 136 ~VLVHC~aG~sRS~t 150 (327)
.++|+|..|. ||..
T Consensus 91 eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 91 EIIFGCASGV-RSLK 104 (136)
T ss_pred cEEEEeccCc-chhH
Confidence 7999999995 9844
No 99
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=29.37 E-value=55 Score=30.41 Aligned_cols=27 Identities=37% Similarity=0.370 Sum_probs=19.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 020341 142 FAGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 142 ~aG~sRS~tvv~AyLm~~~~~s~~~Al~~ 170 (327)
.=|+|||++.+.|-| ..|++.++|.++
T Consensus 159 iPGiSRSG~TI~a~l--~~G~~r~~Aa~f 185 (255)
T TIGR00753 159 IPGVSRSGSTISGGL--FIGLNRKAAAEF 185 (255)
T ss_pred ccCCCCchHHHHHHH--HcCCCHHHHHHH
Confidence 359999988776655 347888887664
No 100
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=29.22 E-value=69 Score=25.33 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=27.8
Q ss_pred HhCCcEEEEcCCCCchhHHHHHHHHHHhcCCC-HHHHHHHHH
Q 020341 132 RKEGGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLR 172 (327)
Q Consensus 132 ~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s-~~~Al~~vr 172 (327)
..+++|+=||..| +-++.||+.....+ -.||+..-.
T Consensus 22 ~~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 22 EKDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred HHhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 3467999999988 44679999998875 788876543
No 101
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=28.65 E-value=25 Score=23.82 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=10.2
Q ss_pred CCccccccccce
Q 020341 253 TPAYRCKKCRRV 264 (327)
Q Consensus 253 ~~~yrCrKCRr~ 264 (327)
-+.|+|++|...
T Consensus 3 ~Yey~C~~Cg~~ 14 (52)
T TIGR02605 3 IYEYRCTACGHR 14 (52)
T ss_pred CEEEEeCCCCCE
Confidence 478999999984
No 102
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=28.57 E-value=1.3e+02 Score=23.43 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
+|+|+|..| .||... +. ++...|.
T Consensus 60 ~vvlyC~~G-~rS~~a-a~-~L~~~G~ 83 (101)
T TIGR02981 60 TVKLYCNAG-RQSGMA-KD-ILLDMGY 83 (101)
T ss_pred eEEEEeCCC-HHHHHH-HH-HHHHcCC
Confidence 799999999 477444 33 3344454
No 103
>PRK04860 hypothetical protein; Provisional
Probab=28.45 E-value=33 Score=29.60 Aligned_cols=17 Identities=24% Similarity=0.886 Sum_probs=12.7
Q ss_pred CCccccccccceeeecC
Q 020341 253 TPAYRCKKCRRVVALQE 269 (327)
Q Consensus 253 ~~~yrCrKCRr~L~~~~ 269 (327)
...|+|++|++.|....
T Consensus 141 ~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 141 EAVYRCRRCGETLVFKG 157 (160)
T ss_pred CccEECCCCCceeEEec
Confidence 45699999998886543
No 104
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.45 E-value=41 Score=26.12 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=10.9
Q ss_pred CcEEEEcCCCCc
Q 020341 135 GGVLVHCFAGVS 146 (327)
Q Consensus 135 g~VLVHC~aG~s 146 (327)
.+|||-|.+|++
T Consensus 4 ~~ILl~C~~G~s 15 (95)
T TIGR00853 4 TNILLLCAAGMS 15 (95)
T ss_pred cEEEEECCCchh
Confidence 479999999998
No 105
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=28.44 E-value=63 Score=25.95 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=14.5
Q ss_pred CcEEEEcC-CCCchhHHHHHHHHHH
Q 020341 135 GGVLVHCF-AGVSRSAAIITAYLMR 158 (327)
Q Consensus 135 g~VLVHC~-aG~sRS~tvv~AyLm~ 158 (327)
..|+|||. +| .||+. ++.+|..
T Consensus 69 ~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 69 RVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CEEEEECCCcc-ccHHH-HHHHHHH
Confidence 37999997 66 68744 4445543
No 106
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=28.39 E-value=57 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
.+|+|+|..| .||.. ++.++...|+
T Consensus 62 ~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 62 KPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 3899999988 57643 3455566564
No 107
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=28.23 E-value=60 Score=30.36 Aligned_cols=27 Identities=44% Similarity=0.400 Sum_probs=19.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 020341 142 FAGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 142 ~aG~sRS~tvv~AyLm~~~~~s~~~Al~~ 170 (327)
.=|+|||++.+.+-| ..|++.++|.++
T Consensus 163 iPGiSRSG~TI~~~l--~~G~~r~~Aa~f 189 (268)
T PRK00281 163 IPGTSRSGATISGGL--LLGLSREAAAEF 189 (268)
T ss_pred CCCCCccHHHHHHHH--HcCCCHHHHHHH
Confidence 369999988776655 348888887664
No 108
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=27.88 E-value=77 Score=25.22 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
.+|+|+|..|. ||... +..+...|+
T Consensus 73 ~~ivv~C~~G~-rs~~a--a~~L~~~G~ 97 (122)
T cd01526 73 SPIYVVCRRGN-DSQTA--VRKLKELGL 97 (122)
T ss_pred CcEEEECCCCC-cHHHH--HHHHHHcCC
Confidence 48999999994 87433 233455566
No 109
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=27.72 E-value=2e+02 Score=22.27 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=13.4
Q ss_pred CCcEEEEcCCCCchhHHHH
Q 020341 134 EGGVLVHCFAGVSRSAAII 152 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv 152 (327)
+.+|+|||..+-.||...+
T Consensus 62 ~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 62 KDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CCeEEEEeecCCcchHHHH
Confidence 3489999995556875543
No 110
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=27.59 E-value=29 Score=27.28 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.6
Q ss_pred CcEEEEcCCC
Q 020341 135 GGVLVHCFAG 144 (327)
Q Consensus 135 g~VLVHC~aG 144 (327)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 3799999987
No 111
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=27.55 E-value=77 Score=23.85 Aligned_cols=26 Identities=8% Similarity=-0.086 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
.+|+|+|..| .||.. ++.+| +..|.+
T Consensus 57 ~~ivv~c~~g-~~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 57 TRYVLTCDGS-LLARF-AAQEL-LALGGK 82 (96)
T ss_pred CCEEEEeCCh-HHHHH-HHHHH-HHcCCC
Confidence 3899999877 57744 34444 555653
No 112
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=27.26 E-value=78 Score=24.08 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
...|+|+|..|. ||..+ |..+...|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCCC
Confidence 348999999985 76443 3344555653
No 113
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=26.60 E-value=26 Score=23.30 Aligned_cols=11 Identities=55% Similarity=1.310 Sum_probs=9.5
Q ss_pred CCccccccccc
Q 020341 253 TPAYRCKKCRR 263 (327)
Q Consensus 253 ~~~yrCrKCRr 263 (327)
...|+|+.||+
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 46899999996
No 114
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=26.46 E-value=54 Score=26.67 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=23.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcC
Q 020341 142 FAGVSRSAAIITAYLMRTEQLSSEGALESLRQSC 175 (327)
Q Consensus 142 ~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~R 175 (327)
..|++|+.|.+++||+.....+-.+ ++.+...|
T Consensus 22 ~lgi~R~vA~tlv~L~~~~E~sS~~-IE~~sgLR 54 (124)
T COG4738 22 ILGIPRNVATTLVCLAKGDEASSRE-IERVSGLR 54 (124)
T ss_pred HcCCCchHHHHHHHHhcCcchhhhh-hHHhhcCC
Confidence 5789999999999999875544433 34444443
No 115
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=26.33 E-value=32 Score=34.30 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.1
Q ss_pred ccccccccceeeecC
Q 020341 255 AYRCKKCRRVVALQE 269 (327)
Q Consensus 255 ~yrCrKCRr~L~~~~ 269 (327)
-||||||++..-...
T Consensus 367 g~rC~kCg~~~~~~~ 381 (421)
T COG1571 367 GFRCKKCGTRARETL 381 (421)
T ss_pred CcccccccccCCccc
Confidence 899999999875443
No 116
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=26.24 E-value=47 Score=28.87 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=26.0
Q ss_pred CccccCCeEecCHHhHhcHhh--hhcCCCeEEEE
Q 020341 2 PYLVREHLFIGNISDAADILQ--NGSSEITHMLS 33 (327)
Q Consensus 2 p~~I~~~LylG~~~~a~d~~~--L~~~gIt~Vl~ 33 (327)
|+.+.|++|+-++.+- +++. |++.||+.||-
T Consensus 14 p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~ 46 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIF 46 (168)
T ss_pred ccccCCCEEcCChhhC-CcchhhhhhcCceEEEE
Confidence 7789999999888665 5677 99999999874
No 117
>PF08050 Tet_res_leader: Tetracycline resistance leader peptide; InterPro: IPR012618 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(L) efflux proteins. Tet(L) is a transmembrane protein that can function as a metal-tetracycline/H+ antiporter. Its sequence is preceded by a leader region region that contains a 20-amino-acid open reading frame and an appropriately spaced ribosome binding site []. Expression of the gene is induced by addition of tetracycline, which is thought to act by binding to ribosomes that translate the tet(L) leader peptide coding sequence. The presence of three inverted repeats, which can form two different conformations of mRNA, suggests that the tetracycline resistance (TcR) region is regulated by a translational attenuation mechanism. A Rho-independent transcriptional terminator structure is present immediately after the translational stop codon of the Tet protein [].; GO: 0046677 response to antibiotic
Probab=24.76 E-value=36 Score=18.61 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=8.7
Q ss_pred ccccccceeeec
Q 020341 257 RCKKCRRVVALQ 268 (327)
Q Consensus 257 rCrKCRr~L~~~ 268 (327)
+|+||.|+--..
T Consensus 2 kC~k~Nrvqlk~ 13 (20)
T PF08050_consen 2 KCNKMNRVQLKE 13 (20)
T ss_pred cccccceEEeee
Confidence 699999875433
No 118
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=24.56 E-value=1.7e+02 Score=26.62 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHHHHhC-CcEEEEcCCCCchhHHHHHHHHHHhcCCCHH
Q 020341 119 DYLDVCFDFIDRRRKE-GGVLVHCFAGVSRSAAIITAYLMRTEQLSSE 165 (327)
Q Consensus 119 ~~~~~~~~fI~~~~~~-g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~ 165 (327)
...+.+.+.|.+..++ |..+.-|.+|--++-++.++|.+..+|-..+
T Consensus 95 ~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~gr~~D 142 (224)
T PF09623_consen 95 AFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFGRPQD 142 (224)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcCCccc
Confidence 3455556666666666 6677778888767788888887777664433
No 119
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=24.25 E-value=1.3e+02 Score=27.09 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHh
Q 020341 120 YLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (327)
Q Consensus 120 ~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~ 159 (327)
.|.++++.|-+. .|+|+| .|+|||+-++=++-|+.
T Consensus 27 ~~~~a~~~i~~~--~gkv~V---~G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 27 DFVRAVELILEC--KGKVFV---TGVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHhc--CCcEEE---EcCChhHHHHHHHHHHH
Confidence 455555555544 688887 58999988886665554
No 120
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=24.17 E-value=72 Score=28.42 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHh
Q 020341 152 ITAYLMRTEQLSSEGALESLRQ 173 (327)
Q Consensus 152 v~AyLm~~~~~s~~~Al~~vr~ 173 (327)
+=+.||..+|++-++|++++|.
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~ 171 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRR 171 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3467899999999999999986
No 121
>TIGR00319 desulf_FeS4 desulfoferrodoxin FeS4 iron-binding domain. Neelaredoxin, a monomeric blue non-heme iron protein, lacks this domain.
Probab=23.89 E-value=37 Score=20.98 Aligned_cols=14 Identities=29% Similarity=0.895 Sum_probs=11.7
Q ss_pred CCccccccccceee
Q 020341 253 TPAYRCKKCRRVVA 266 (327)
Q Consensus 253 ~~~yrCrKCRr~L~ 266 (327)
...|+|+.|+.++.
T Consensus 5 ~~~ykC~~Cgniv~ 18 (34)
T TIGR00319 5 GQVYKCEVCGNIVE 18 (34)
T ss_pred CcEEEcCCCCcEEE
Confidence 35899999999884
No 122
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.81 E-value=1.5e+02 Score=29.03 Aligned_cols=12 Identities=50% Similarity=0.972 Sum_probs=9.7
Q ss_pred hCC-cEEEEcCCC
Q 020341 133 KEG-GVLVHCFAG 144 (327)
Q Consensus 133 ~~g-~VLVHC~aG 144 (327)
.+| .||.||.+|
T Consensus 165 ~dg~~ILThcnsg 177 (363)
T PRK05772 165 NDGDTVLTQCNAG 177 (363)
T ss_pred CCCCEEEEecCCc
Confidence 356 799999887
No 123
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=23.81 E-value=3e+02 Score=26.46 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHhHHHHHHHHHHHHhC---CcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCCcccCCHHHHHHH
Q 020341 118 LDYLDVCFDFIDRRRKE---GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQL 188 (327)
Q Consensus 118 ~~~~~~~~~fI~~~~~~---g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp~~~pn~~f~~qL 188 (327)
.+..+.++.|+.+.+.+ -++=.-|..+ .-..-+|-+ .....++.|+..++..+--+.+|+.+...+
T Consensus 90 ~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~---~Ll~RLa~~--~t~~el~~~~l~l~D~kdk~~sn~kl~~k~ 158 (317)
T PF11822_consen 90 ESLVEECLQYCHDHMSEIVASPCNLNCLND---NLLTRLADM--FTHEELEAAFLRLKDKKDKIKSNRKLFCKK 158 (317)
T ss_pred HHHHHHHHHHHHHhHHHHHcCCCCcccCCH---HHHHHHHHh--cCcccHhHhhhhhcCchhccccHHHHHHHH
Confidence 34567888888777643 2444455333 222222222 235677778888888887788886664433
No 124
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=23.67 E-value=1e+02 Score=23.36 Aligned_cols=25 Identities=40% Similarity=0.499 Sum_probs=17.2
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
+|+|+|..|. ||.. ++.++...|..
T Consensus 68 ~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 68 ELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred eEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 8999999985 7633 34555666753
No 125
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.66 E-value=1.7e+02 Score=25.92 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHhHHHHHHHHHHHHhCC-cEEEEcCCCCchhHHHHHH
Q 020341 117 LLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITA 154 (327)
Q Consensus 117 l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~A 154 (327)
+.+.+.++.+.|.+++.++ +|+| | |.|+|++++.-
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~-~--G~GgSa~~A~~ 58 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILC-C--GNGTSAANAQH 58 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEE-E--ECcHHHHHHHH
Confidence 3456788888888888887 5655 4 66788665533
No 126
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=23.40 E-value=35 Score=21.86 Aligned_cols=13 Identities=31% Similarity=0.953 Sum_probs=8.2
Q ss_pred CCcccccccccee
Q 020341 253 TPAYRCKKCRRVV 265 (327)
Q Consensus 253 ~~~yrCrKCRr~L 265 (327)
.-.|+|..|..++
T Consensus 4 ~~~YkC~~CGniV 16 (36)
T PF06397_consen 4 GEFYKCEHCGNIV 16 (36)
T ss_dssp TEEEE-TTT--EE
T ss_pred ccEEEccCCCCEE
Confidence 4589999999886
No 127
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.17 E-value=57 Score=35.13 Aligned_cols=64 Identities=22% Similarity=0.470 Sum_probs=35.4
Q ss_pred CCCCccccccccceeeecCccccC----------CCCCCCchhhhhh--hccCCCCCCCCCCCCccc-eechhhhhhH
Q 020341 251 NRTPAYRCKKCRRVVALQENVVDH----------IPGEGETAFEWHK--RKSGNRFNRSDESECSSI-FVEPLRWMTA 315 (327)
Q Consensus 251 ~~~~~yrCrKCRr~L~~~~~i~~H----------~~~~~~~~~~~~k--~~~~~~~~~~~~~~Css~-Fvepl~WM~~ 315 (327)
......|||.||.=+--=-.++++ ...+-...|.|.- +..+.+ .+..+-.|+.+ |+-|.+.|-.
T Consensus 214 ~~~~IvRCr~CRtYiNPFV~fid~gr~WrCNlC~~~NdvP~~f~~~~~t~~~~~~-~~RpEl~~s~vE~iAP~eYmlR 290 (887)
T KOG1985|consen 214 TSTLIVRCRRCRTYINPFVEFIDQGRRWRCNLCGRVNDVPDDFDWDPLTGAYGDP-YSRPELTSSVVEFIAPSEYMLR 290 (887)
T ss_pred cCCceeeehhhhhhcCCeEEecCCCceeeechhhhhcCCcHHhhcCccccccCCc-ccCccccceeEEEecCcccccC
Confidence 356799999999866333334443 1122233466652 111111 23344567766 8899988863
No 128
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=22.77 E-value=4.4e+02 Score=24.97 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=39.4
Q ss_pred HHHHHHHHHH--hCC-cEEEEcCCCCchhHHHHHHHHHHhcC------CCHHHHHHHHHh---cCCcccCCHHHHHHHHH
Q 020341 123 VCFDFIDRRR--KEG-GVLVHCFAGVSRSAAIITAYLMRTEQ------LSSEGALESLRQ---SCESVCPNDGFLEQLKM 190 (327)
Q Consensus 123 ~~~~fI~~~~--~~g-~VLVHC~aG~sRS~tvv~AyLm~~~~------~s~~~Al~~vr~---~Rp~~~pn~~f~~qL~~ 190 (327)
.+.-++.++. +.| .||||-.+|- +.++++-|++..| .+-.+-.+..++ .+|...-+..|.+++..
T Consensus 133 TAy~ll~e~y~vkpGhtVlvhaAAGG---VGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~k 209 (336)
T KOG1197|consen 133 TAYMLLFEAYNVKPGHTVLVHAAAGG---VGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKK 209 (336)
T ss_pred HHHHHHHHhcCCCCCCEEEEEecccc---HHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHh
Confidence 4455666663 467 7999999994 4556666666544 233333333332 34555666666666666
Q ss_pred HH
Q 020341 191 FE 192 (327)
Q Consensus 191 ~e 192 (327)
|-
T Consensus 210 iT 211 (336)
T KOG1197|consen 210 IT 211 (336)
T ss_pred cc
Confidence 54
No 129
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=22.71 E-value=41 Score=25.36 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.4
Q ss_pred Cccccccccceeeec
Q 020341 254 PAYRCKKCRRVVALQ 268 (327)
Q Consensus 254 ~~yrCrKCRr~L~~~ 268 (327)
+.|.||.|+..+.+=
T Consensus 3 i~Y~CRHCg~~IG~i 17 (76)
T PF10955_consen 3 IHYYCRHCGTKIGTI 17 (76)
T ss_pred eEEEecCCCCEEEEe
Confidence 579999999998553
No 130
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.56 E-value=50 Score=20.91 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=11.5
Q ss_pred CCCcccccccccee
Q 020341 252 RTPAYRCKKCRRVV 265 (327)
Q Consensus 252 ~~~~yrCrKCRr~L 265 (327)
.+...+|.+|+.+.
T Consensus 22 ~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 22 KGRKVRCSKCGHVF 35 (36)
T ss_pred CCcEEECCCCCCEe
Confidence 46789999999864
No 131
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=22.48 E-value=26 Score=24.25 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=15.2
Q ss_pred CCccccccccceeeecCccccCCC
Q 020341 253 TPAYRCKKCRRVVALQENVVDHIP 276 (327)
Q Consensus 253 ~~~yrCrKCRr~L~~~~~i~~H~~ 276 (327)
...|+|.+|+...-.+=++.-|+.
T Consensus 19 ~~~y~C~~C~~~FC~dCD~fiHE~ 42 (51)
T PF07975_consen 19 SSRYRCPKCKNHFCIDCDVFIHET 42 (51)
T ss_dssp -EEE--TTTT--B-HHHHHTTTTT
T ss_pred CCeEECCCCCCccccCcChhhhcc
Confidence 578999999999888888887864
No 132
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=22.38 E-value=3e+02 Score=26.49 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCccccCCeEecC--HHhHhcHhhh----hcCCCeEEEEccc
Q 020341 1 MPYLVREHLFIGN--ISDAADILQN----GSSEITHMLSVLS 36 (327)
Q Consensus 1 ~p~~I~~~LylG~--~~~a~d~~~L----~~~gIt~Vl~l~~ 36 (327)
+|.-|+.++.++. .....++... ..-|||+|++...
T Consensus 13 lPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~ 54 (374)
T cd01317 13 APGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPN 54 (374)
T ss_pred ecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCC
Confidence 5777888888765 3334444443 3458999999853
No 133
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.04 E-value=4.6e+02 Score=22.18 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=25.6
Q ss_pred CCcHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchh-HHHHHHHHHHhcCCCHHHHHHHHHh
Q 020341 114 SENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRS-AAIITAYLMRTEQLSSEGALESLRQ 173 (327)
Q Consensus 114 ~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS-~tvv~AyLm~~~~~s~~~Al~~vr~ 173 (327)
...+...++.+.+++..+- .++|- ...+.+||-+. ++++.+++..
T Consensus 13 ~~~L~~~le~a~e~~~~~~-----------elT~eEl~lv~~ylkRD----l~~~a~~~~~ 58 (146)
T PF07295_consen 13 EEELQEALEKAKEYLVAAG-----------ELTREELALVSAYLKRD----LEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------hcCHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3444455555555554442 23444 56777877554 6777777766
No 134
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=21.71 E-value=86 Score=23.56 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=12.5
Q ss_pred cEEEEcCCCCchhHHHH
Q 020341 136 GVLVHCFAGVSRSAAII 152 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv 152 (327)
+|+|.|.+|++=| +++
T Consensus 2 kilvvCg~G~gtS-~ml 17 (87)
T cd05567 2 KIVFACDAGMGSS-AMG 17 (87)
T ss_pred EEEEECCCCccHH-HHH
Confidence 6899999998765 443
No 135
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=21.54 E-value=2e+02 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
.|+|+|..| .||... +..| ...|.
T Consensus 62 ~IVlyC~~G-~rS~~a-a~~L-~~~G~ 85 (104)
T PRK10287 62 TVKLYCNAG-RQSGQA-KEIL-SEMGY 85 (104)
T ss_pred eEEEEeCCC-hHHHHH-HHHH-HHcCC
Confidence 699999988 566444 3333 34454
No 136
>PRK04351 hypothetical protein; Provisional
Probab=21.51 E-value=39 Score=28.75 Aligned_cols=16 Identities=50% Similarity=0.924 Sum_probs=12.5
Q ss_pred CCccccccccceeeec
Q 020341 253 TPAYRCKKCRRVVALQ 268 (327)
Q Consensus 253 ~~~yrCrKCRr~L~~~ 268 (327)
...|+|++|+..|...
T Consensus 130 ~~~yrCg~C~g~L~~~ 145 (149)
T PRK04351 130 TKRYRCGKCRGKLKLI 145 (149)
T ss_pred CCcEEeCCCCcEeeec
Confidence 3679999999888544
No 137
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=21.43 E-value=79 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
+|+|+|..|. || +++ ++++...|.
T Consensus 233 ~ii~yC~~G~-~A-~~~-~~~l~~~G~ 256 (281)
T PRK11493 233 PIIASCGSGV-TA-AVV-VLALATLDV 256 (281)
T ss_pred CEEEECCcHH-HH-HHH-HHHHHHcCC
Confidence 7999999985 55 443 333345554
No 138
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.39 E-value=73 Score=25.31 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=10.6
Q ss_pred cEEEEcCCCCchh
Q 020341 136 GVLVHCFAGVSRS 148 (327)
Q Consensus 136 ~VLVHC~aG~sRS 148 (327)
+||+-|.+|+|=|
T Consensus 3 kILlvCg~G~STS 15 (104)
T PRK09590 3 KALIICAAGMSSS 15 (104)
T ss_pred EEEEECCCchHHH
Confidence 6999999999433
No 139
>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....
Probab=21.25 E-value=52 Score=27.17 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=16.5
Q ss_pred CCCccccccccceeeecCccc
Q 020341 252 RTPAYRCKKCRRVVALQENVV 272 (327)
Q Consensus 252 ~~~~yrCrKCRr~L~~~~~i~ 272 (327)
...+|.|+.|...||.+..=.
T Consensus 34 ~~G~Y~C~~Cg~pLF~S~~Kf 54 (124)
T PF01641_consen 34 EEGIYVCAVCGTPLFSSDTKF 54 (124)
T ss_dssp SSEEEEETTTS-EEEEGGGEE
T ss_pred CCEEEEcCCCCCccccCcccc
Confidence 356999999999999987644
No 140
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=21.20 E-value=1.8e+02 Score=22.32 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 020341 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (327)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s 163 (327)
+.+++|+|..|. ||.. + +..++..|++
T Consensus 58 ~~~ivv~c~~g~-~s~~-a-~~~L~~~G~~ 84 (108)
T PRK00162 58 DTPVMVMCYHGN-SSQG-A-AQYLLQQGFD 84 (108)
T ss_pred CCCEEEEeCCCC-CHHH-H-HHHHHHCCch
Confidence 448999999985 6633 2 3345555653
No 141
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=20.98 E-value=2.6e+02 Score=27.75 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=28.0
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Q 020341 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCE 176 (327)
Q Consensus 138 LVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~~Rp 176 (327)
..||.+ -+.++- ++.++|...|+++.+|++.+.+...
T Consensus 55 ~~~Cf~-Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~~g 91 (415)
T TIGR01391 55 FYHCFG-CGAGGD-AIKFLMEIEGISFVEAVEELAKRAG 91 (415)
T ss_pred cEEECC-CCCCCC-HHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 478874 344544 4688999999999999999976543
No 142
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=20.94 E-value=2.1e+02 Score=27.31 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=16.5
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
.|+|+|..|-.||..+ +.++...|+
T Consensus 76 ~vvvyC~~gG~RS~~a--a~~L~~~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSL--AWLLAQIGF 100 (311)
T ss_pred cEEEEECCCChHHHHH--HHHHHHcCC
Confidence 4999997554788544 345555565
No 143
>cd00974 DSRD Desulforedoxin (DSRD) domain; a small non-heme iron domain present in the desulforedoxin (rubredoxin oxidoreductase) and desulfoferrodoxin proteins of some archeael and bacterial methanogens and sulfate/sulfur reducers. Desulforedoxin is a small, single-domain homodimeric protein; each subunit contains an iron atom bound to four cysteinyl sulfur atoms, Fe(S-Cys)4, in a distorted tetrahedral coordination. Its metal center is similar to that found in rubredoxin type proteins. Desulforedoxin is regarded as a potential redox partner for rubredoxin. Desulfoferrodoxin forms a homodimeric protein, with each protomer comprised of two domains, the N-terminal DSRD domain and C-terminal superoxide reductase-like (SORL) domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=20.63 E-value=48 Score=20.52 Aligned_cols=13 Identities=31% Similarity=0.973 Sum_probs=11.2
Q ss_pred Cccccccccceee
Q 020341 254 PAYRCKKCRRVVA 266 (327)
Q Consensus 254 ~~yrCrKCRr~L~ 266 (327)
..|+|..|+.++.
T Consensus 3 ~~ykC~~CGniv~ 15 (34)
T cd00974 3 EVYKCEICGNIVE 15 (34)
T ss_pred cEEEcCCCCcEEE
Confidence 4799999999884
No 144
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=20.55 E-value=1e+02 Score=28.91 Aligned_cols=26 Identities=46% Similarity=0.402 Sum_probs=17.1
Q ss_pred CCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 020341 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (327)
Q Consensus 143 aG~sRS~tvv~AyLm~~~~~s~~~Al~~ 170 (327)
=|.|||++.+.+-| -.|++.+.|.++
T Consensus 165 PG~SRSGaTI~~~l--llG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGL--LLGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHH--HcCCCHHHHHHH
Confidence 69999977665544 236677776553
No 145
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=20.55 E-value=3.1e+02 Score=27.41 Aligned_cols=52 Identities=29% Similarity=0.511 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCC--cEEEEcC----------------CCCchhHHHHHHHHHHhcCC-----CHHHHHHHHHh
Q 020341 122 DVCFDFIDRRRKEG--GVLVHCF----------------AGVSRSAAIITAYLMRTEQL-----SSEGALESLRQ 173 (327)
Q Consensus 122 ~~~~~fI~~~~~~g--~VLVHC~----------------aG~sRS~tvv~AyLm~~~~~-----s~~~Al~~vr~ 173 (327)
+..++.|++..++| -+-|||. .=+||.+++.++|++....- .+++.++..++
T Consensus 143 d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~ 217 (431)
T PRK13352 143 DDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKE 217 (431)
T ss_pred HHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHH
Confidence 44567788888888 4899994 12699999999999876542 35556666553
No 146
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=20.38 E-value=5.4e+02 Score=24.28 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=53.1
Q ss_pred CcceEEEEEecCCCCCC-----cHHHhHHHHHHHHHHHHhCCcEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHh
Q 020341 99 DLKLVRMTVPIRDMESE-----NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQ 173 (327)
Q Consensus 99 ~~~i~~l~ipi~D~~~~-----~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AyLm~~~~~s~~~Al~~vr~ 173 (327)
+..+.....|..|.... +....++..++..+.++..+.+=++|..|+.=. -+.+|+... +++++|++.++.
T Consensus 33 Gt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPa---E~~~l~e~~-~~peea~e~m~~ 108 (285)
T COG1831 33 GTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPA---EVSRLAEAG-RSPEEALEEMRH 108 (285)
T ss_pred CcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCHH---HHHHHHHhc-cChHHHHHHHHH
Confidence 33455666666665544 777778888888888888888889999998643 346777774 999998888774
No 147
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=20.34 E-value=99 Score=30.26 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=16.8
Q ss_pred cEEEEcCCCCchhHHHHHHHHHHhcCC
Q 020341 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (327)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AyLm~~~~~ 162 (327)
+|+|||..| .||. .++.+| +..|+
T Consensus 334 ~Ivv~C~sG-~RS~-~Aa~~L-~~~G~ 357 (370)
T PRK05600 334 NVVVYCASG-IRSA-DFIEKY-SHLGH 357 (370)
T ss_pred cEEEECCCC-hhHH-HHHHHH-HHcCC
Confidence 899999999 5884 444555 34465
No 148
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=20.32 E-value=1.4e+02 Score=23.08 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCc-hhHHHHHHHHHHhcCC
Q 020341 135 GGVLVHCFAGVS-RSAAIITAYLMRTEQL 162 (327)
Q Consensus 135 g~VLVHC~aG~s-RS~tvv~AyLm~~~~~ 162 (327)
.+|+|+|..|.. ||. .+ +..++..|.
T Consensus 65 ~~vvvyc~~g~~~~s~-~~-a~~l~~~G~ 91 (110)
T cd01521 65 KLFVVYCDGPGCNGAT-KA-ALKLAELGF 91 (110)
T ss_pred CeEEEEECCCCCchHH-HH-HHHHHHcCC
Confidence 489999998863 543 33 344455565
No 149
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=20.18 E-value=3e+02 Score=27.48 Aligned_cols=52 Identities=29% Similarity=0.501 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCC--cEEEEcCC----------------CCchhHHHHHHHHHHhcCC-----CHHHHHHHHHh
Q 020341 122 DVCFDFIDRRRKEG--GVLVHCFA----------------GVSRSAAIITAYLMRTEQL-----SSEGALESLRQ 173 (327)
Q Consensus 122 ~~~~~fI~~~~~~g--~VLVHC~a----------------G~sRS~tvv~AyLm~~~~~-----s~~~Al~~vr~ 173 (327)
+..++.|++..++| -+-|||.. =+||.+++.++|+++...- .+++.++..++
T Consensus 139 d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~ 213 (420)
T PF01964_consen 139 DDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKE 213 (420)
T ss_dssp HHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHH
Confidence 55677788888888 49999952 2699999999999987553 46677777764
No 150
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.17 E-value=1.6e+02 Score=28.53 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=13.1
Q ss_pred hCC-cEEEEcCCCCchhH
Q 020341 133 KEG-GVLVHCFAGVSRSA 149 (327)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~ 149 (327)
..| .||.||.+|..+++
T Consensus 146 ~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 146 EDGDTVLTHCNAGRLACV 163 (339)
T ss_pred cCCCEEEEecCCcccccc
Confidence 346 79999999976653
Done!