Query 020344
Match_columns 327
No_of_seqs 136 out of 1289
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 15:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.4 2E-05 6.8E-10 75.1 18.4 63 95-160 191-253 (445)
2 3gia_A Uncharacterized protein 98.0 0.00044 1.5E-08 65.7 18.2 63 94-159 187-249 (444)
3 4djk_A Probable glutamate/gamm 97.9 0.00052 1.8E-08 66.4 18.0 60 99-161 205-264 (511)
4 2jln_A MHP1; hydantoin, transp 85.0 24 0.00081 33.7 15.2 34 24-58 143-176 (501)
5 3dh4_A Sodium/glucose cotransp 54.2 1.5E+02 0.0052 28.2 19.3 29 129-157 252-283 (530)
6 2xq2_A Sodium/glucose cotransp 29.3 3.9E+02 0.013 25.7 18.6 38 245-282 406-443 (593)
7 3mp7_B Preprotein translocase 18.3 1.1E+02 0.0036 20.2 3.1 26 126-155 25-50 (61)
8 2a65_A Leutaa, Na(+):neurotran 17.7 6.4E+02 0.022 23.9 15.6 60 97-160 244-309 (519)
9 1afo_A Glycophorin A; integral 16.9 1.6E+02 0.0056 17.5 3.3 19 300-318 12-30 (40)
10 2zjs_E Preprotein translocase 13.8 1.3E+02 0.0043 19.5 2.6 28 115-142 10-38 (60)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.36 E-value=2e-05 Score=75.07 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCC
Q 020344 95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND 160 (327)
Q Consensus 95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 160 (327)
.+++.++....|+|.|........+|+||| +|+.+|++..+.....++|....+.-....+.+
T Consensus 191 ~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 191 GAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp --HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 467788899999999999999999999998 377999999999999999999887766666554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.95 E-value=0.00044 Score=65.70 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCC
Q 020344 94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 159 (327)
Q Consensus 94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~ 159 (327)
..+++.+++...|+|.|........+|+||| +|+.+|++..+.....++|....+......+.
T Consensus 187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 187 VSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLPI 249 (444)
T ss_dssp HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3467788888899999999999999999998 35699999999999999999887765555543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.90 E-value=0.00052 Score=66.41 Aligned_cols=60 Identities=7% Similarity=0.042 Sum_probs=51.5
Q ss_pred HHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc
Q 020344 99 QALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT 161 (327)
Q Consensus 99 ~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~ 161 (327)
.++....|+|.|.......-+|+||| +++.+|++..+..+..++|....+.-....+++.
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~ 264 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNE 264 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhh
Confidence 34667899999999999999999998 3779999999999999999998887776666543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=85.03 E-value=24 Score=33.70 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 020344 24 TKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSF 58 (327)
Q Consensus 24 ~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~ 58 (327)
..+.++++++.++..+. -++.++++..++....+
T Consensus 143 ~v~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~ 176 (501)
T 2jln_A 143 PLWIVIFGAIQVVTTFY-GITFIRWMNVFASPVLL 176 (501)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 34556677777777744 47888877766544433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=54.19 E-value=1.5e+02 Score=28.21 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=17.1
Q ss_pred cchhhHHHHHHHHHHHHh---hhhhhhhhccc
Q 020344 129 KTMKMASMISIFITTFFY---LCCGCFGYAAF 157 (327)
Q Consensus 129 ~~~~~~~~~s~~~~~~~Y---~~~g~~GY~~f 157 (327)
++.+|....+......+. ...|+.++..+
T Consensus 252 k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~ 283 (530)
T 3dh4_A 252 SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVIT 283 (530)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666655443333 34566666656
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=29.35 E-value=3.9e+02 Score=25.68 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHh
Q 020344 245 YVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEM 282 (327)
Q Consensus 245 ~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~ 282 (327)
+.+++..+|..+.+.+.+++++....+....=++|+++
T Consensus 406 ~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~l 443 (593)
T 2xq2_A 406 ALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFL 443 (593)
T ss_dssp HHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 33455556655556666666655444433333445544
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=18.30 E-value=1.1e+02 Score=20.22 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=16.0
Q ss_pred ccccchhhHHHHHHHHHHHHhhhhhhhhhc
Q 020344 126 PENKTMKMASMISIFITTFFYLCCGCFGYA 155 (327)
Q Consensus 126 p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~ 155 (327)
|+++.|.++...+.+. ..++|+.||.
T Consensus 25 Pd~~Ef~~iak~~~iG----~~i~G~iGf~ 50 (61)
T 3mp7_B 25 PNWATYKRAAKITGLG----IILIGLIGML 50 (61)
T ss_dssp CCTTHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 4888998877654433 2345666654
No 8
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=17.65 E-value=6.4e+02 Score=23.91 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcc-CchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHh-----hhhhhhhhcccCCC
Q 020344 97 AFQALGDIAFAYP-YSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFY-----LCCGCFGYAAFGND 160 (327)
Q Consensus 97 ~~~~~gi~~faf~-~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y-----~~~g~~GY~~fG~~ 160 (327)
...+.|...|+.+ |.+.+...-+-+++. ++..+.........+..- .+++..||.++|.+
T Consensus 244 w~~A~gQ~FFSLslG~G~~ity~SY~~~~----~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 244 WIAAVGQIFFTLSLGFGAIITYASYVRKD----QDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHTTSCTT----SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhHHHHhHHhhhhcccCCC----cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3556788888888 455555655556654 555554332222222221 23344567666655
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=16.89 E-value=1.6e+02 Score=17.45 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020344 300 RTFSFICLLVTIIGLIGSI 318 (327)
Q Consensus 300 ~~~~~~g~i~~v~gt~~si 318 (327)
..++++|...|+.|++-.+
T Consensus 12 i~lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3556788888888887544
No 10
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=13.82 E-value=1.3e+02 Score=19.55 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=16.6
Q ss_pred HHHHhhcCCCC-ccccchhhHHHHHHHHH
Q 020344 115 LEIQDTLKSPP-PENKTMKMASMISIFIT 142 (327)
Q Consensus 115 ~~i~~~M~~p~-p~~~~~~~~~~~s~~~~ 142 (327)
-+..+|||+=. |++++..+........+
T Consensus 10 ~~v~~ElkKV~WPtr~e~~~~t~vViv~v 38 (60)
T 2zjs_E 10 QEARAELARVTWPTREQVVEGTQAILLFT 38 (60)
T ss_dssp --CCCCCCCCCCSCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCcCHHHHHHHHHHHHHHH
Confidence 35678898744 78888776544433333
Done!