Query 020345
Match_columns 327
No_of_seqs 342 out of 1793
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 1.7E-27 3.8E-32 218.0 25.9 148 89-242 35-185 (223)
2 PF09335 SNARE_assoc: SNARE as 99.8 4.9E-20 1.1E-24 152.0 14.2 120 121-241 1-122 (123)
3 COG0586 DedA Uncharacterized m 99.8 8.3E-18 1.8E-22 152.7 22.2 154 90-248 4-169 (208)
4 PRK10847 hypothetical protein; 99.8 7.6E-18 1.7E-22 154.1 19.1 124 119-246 47-181 (219)
5 KOG3140 Predicted membrane pro 99.6 4.3E-15 9.4E-20 139.4 12.8 144 104-250 95-241 (275)
6 COG1238 Predicted membrane pro 99.3 1.9E-11 4.1E-16 106.7 13.8 144 91-243 8-156 (161)
7 PF06695 Sm_multidrug_ex: Puta 94.5 0.77 1.7E-05 38.3 11.3 98 135-233 15-119 (121)
8 TIGR02359 thiW thiW protein. L 89.0 9.8 0.00021 33.3 12.0 32 123-154 34-65 (160)
9 PRK12821 aspartyl/glutamyl-tRN 86.3 17 0.00037 37.0 13.1 26 125-150 100-125 (477)
10 PF01102 Glycophorin_A: Glycop 85.6 1.3 2.8E-05 37.1 4.3 62 255-318 60-121 (122)
11 PRK01844 hypothetical protein; 83.2 3 6.5E-05 31.7 4.9 25 136-160 3-27 (72)
12 PF09835 DUF2062: Uncharacteri 82.0 31 0.00067 29.4 13.2 100 195-295 30-152 (154)
13 PF12794 MscS_TM: Mechanosensi 78.0 72 0.0016 31.2 17.1 16 120-135 57-72 (340)
14 PF07155 ECF-ribofla_trS: ECF- 77.7 7.2 0.00016 33.7 6.3 33 122-154 37-69 (169)
15 PRK00523 hypothetical protein; 76.3 6.5 0.00014 29.9 4.8 23 138-160 6-28 (72)
16 PRK01637 hypothetical protein; 74.6 29 0.00063 32.8 10.1 43 204-246 187-229 (286)
17 COG3763 Uncharacterized protei 71.3 11 0.00023 28.6 4.8 34 137-173 4-37 (71)
18 PF11368 DUF3169: Protein of u 67.1 21 0.00047 33.1 7.2 23 218-240 8-30 (248)
19 PRK13661 hypothetical protein; 67.0 22 0.00047 31.8 6.9 33 122-154 39-71 (182)
20 PF03672 UPF0154: Uncharacteri 66.5 9.4 0.0002 28.4 3.7 22 142-163 2-24 (64)
21 PF12273 RCR: Chitin synthesis 64.8 5.2 0.00011 33.5 2.4 28 261-288 2-29 (130)
22 TIGR00261 traB pheromone shutd 64.2 81 0.0018 31.5 10.9 39 55-99 240-278 (380)
23 PRK15083 PTS system mannitol-s 62.6 1.2E+02 0.0026 32.3 12.6 28 261-288 313-340 (639)
24 COG5336 Uncharacterized protei 62.0 46 0.001 27.4 7.2 20 220-247 51-70 (116)
25 PF06695 Sm_multidrug_ex: Puta 60.6 24 0.00053 29.2 5.6 34 119-152 83-120 (121)
26 PF04246 RseC_MucC: Positive r 58.7 30 0.00065 28.9 6.0 39 127-165 81-121 (135)
27 PF08374 Protocadherin: Protoc 58.3 13 0.00028 34.1 3.8 79 233-311 6-94 (221)
28 PRK11404 putative PTS system 54.6 2.6E+02 0.0057 28.8 16.8 70 220-296 400-476 (482)
29 COG4956 Integral membrane prot 54.1 1.3E+02 0.0027 29.5 9.8 14 231-244 117-130 (356)
30 COG3086 RseC Positive regulato 53.1 49 0.0011 28.6 6.3 37 128-164 90-127 (150)
31 PRK12489 anaerobic C4-dicarbox 53.0 2.7E+02 0.0058 28.5 12.6 32 263-294 173-204 (443)
32 COG4858 Uncharacterized membra 52.9 50 0.0011 29.9 6.5 23 218-240 161-183 (226)
33 PRK11677 hypothetical protein; 52.5 16 0.00034 31.2 3.2 22 140-161 3-24 (134)
34 PF04995 CcmD: Heme exporter p 52.2 40 0.00087 23.0 4.7 17 280-296 27-43 (46)
35 PRK09609 hypothetical protein; 52.0 40 0.00087 32.7 6.2 25 126-150 46-70 (312)
36 PF03773 DUF318: Predicted per 51.8 2.2E+02 0.0048 27.1 14.7 77 141-233 19-96 (307)
37 PF07172 GRP: Glycine rich pro 50.4 37 0.0008 27.2 4.9 20 264-283 7-26 (95)
38 COG0398 Uncharacterized conser 50.1 1.1E+02 0.0025 28.0 8.8 40 87-134 119-158 (223)
39 PF12822 DUF3816: Protein of u 49.8 15 0.00032 31.6 2.7 32 122-153 30-61 (172)
40 PF09512 ThiW: Thiamine-precur 49.6 1.8E+02 0.0038 25.4 9.7 45 117-161 65-115 (150)
41 PF06195 DUF996: Protein of un 45.9 1.9E+02 0.0041 24.6 9.2 34 263-296 76-109 (139)
42 COG2851 CitM H+/citrate sympor 42.8 28 0.0006 34.9 3.6 78 214-296 131-211 (433)
43 PF06305 DUF1049: Protein of u 41.2 49 0.0011 23.9 4.1 16 280-295 44-59 (68)
44 PF14143 YrhC: YrhC-like prote 41.2 1.6E+02 0.0035 22.4 7.9 12 233-244 20-31 (72)
45 PRK11677 hypothetical protein; 39.8 20 0.00044 30.5 2.0 26 261-286 3-28 (134)
46 COG3105 Uncharacterized protei 38.8 38 0.00083 28.7 3.4 30 259-288 6-35 (138)
47 PRK10862 SoxR reducing system 38.5 75 0.0016 27.5 5.4 21 141-161 104-124 (154)
48 COG4732 Predicted membrane pro 37.8 52 0.0011 28.8 4.1 29 121-149 37-66 (177)
49 PF06781 UPF0233: Uncharacteri 37.2 59 0.0013 25.7 4.1 20 54-73 30-49 (87)
50 TIGR03141 cytochro_ccmD heme e 37.0 1.2E+02 0.0025 20.7 5.0 11 283-293 31-41 (45)
51 PRK00191 tatA twin arginine tr 36.9 69 0.0015 25.1 4.3 21 285-305 41-61 (84)
52 PF05915 DUF872: Eukaryotic pr 36.3 1.4E+02 0.0031 24.6 6.4 18 55-72 40-57 (115)
53 PF11190 DUF2976: Protein of u 35.5 2.2E+02 0.0048 22.4 7.9 60 221-285 24-84 (87)
54 PRK10034 fructuronate transpor 34.9 5.1E+02 0.011 26.5 14.2 24 206-229 124-150 (447)
55 COG4732 Predicted membrane pro 33.8 3.3E+02 0.0071 23.9 11.5 19 116-134 73-92 (177)
56 PF01102 Glycophorin_A: Glycop 33.8 76 0.0017 26.6 4.5 9 152-160 83-91 (122)
57 PF09512 ThiW: Thiamine-precur 33.7 69 0.0015 27.8 4.3 21 125-145 33-53 (150)
58 COG4597 BatB ABC-type amino ac 33.2 4.8E+02 0.01 25.6 10.5 36 134-169 91-128 (397)
59 PRK11281 hypothetical protein; 33.1 8.1E+02 0.018 28.2 15.8 28 219-246 684-712 (1113)
60 PF06295 DUF1043: Protein of u 33.0 37 0.0008 28.4 2.5 20 142-161 1-20 (128)
61 PF11044 TMEMspv1-c74-12: Plec 32.9 1.2E+02 0.0026 21.0 4.4 17 267-283 12-28 (49)
62 PF06570 DUF1129: Protein of u 32.7 1.4E+02 0.0031 26.8 6.4 24 218-241 146-169 (206)
63 PRK01844 hypothetical protein; 32.1 1.3E+02 0.0028 22.9 5.0 25 267-291 10-34 (72)
64 PRK05415 hypothetical protein; 32.1 4.4E+02 0.0095 26.0 10.0 56 190-245 210-276 (341)
65 PF04341 DUF485: Protein of un 32.0 2.5E+02 0.0053 21.9 7.0 26 266-291 58-83 (91)
66 PF10883 DUF2681: Protein of u 31.4 82 0.0018 24.9 4.0 11 294-304 61-71 (87)
67 PF08006 DUF1700: Protein of u 31.2 3.5E+02 0.0077 23.5 12.7 32 137-169 141-172 (181)
68 PF09335 SNARE_assoc: SNARE as 30.9 2.6E+02 0.0057 21.9 9.8 39 120-158 82-121 (123)
69 PF10337 DUF2422: Protein of u 30.5 5.8E+02 0.013 25.7 15.3 33 206-238 146-178 (459)
70 PRK09821 putative transporter; 30.3 6.1E+02 0.013 26.0 15.2 27 264-290 179-205 (454)
71 PRK10929 putative mechanosensi 30.2 9E+02 0.019 27.9 14.2 32 121-152 532-564 (1109)
72 COG4064 MtrG Tetrahydromethano 29.9 88 0.0019 23.7 3.7 23 130-152 50-72 (75)
73 PF13807 GNVR: G-rich domain o 28.8 85 0.0018 23.8 3.7 32 114-145 47-79 (82)
74 COG5524 Bacteriorhodopsin [Gen 28.4 1.9E+02 0.0042 27.7 6.6 67 200-283 113-179 (285)
75 PF09515 Thia_YuaJ: Thiamine t 28.1 3.8E+02 0.0081 23.8 8.2 61 217-281 105-167 (177)
76 PRK00523 hypothetical protein; 28.0 1.9E+02 0.004 22.1 5.2 25 267-291 11-35 (72)
77 COG1238 Predicted membrane pro 27.6 1.3E+02 0.0028 26.4 5.0 52 198-249 31-82 (161)
78 PF00558 Vpu: Vpu protein; In 27.6 80 0.0017 24.6 3.3 11 268-278 16-26 (81)
79 PRK10478 putative PTS system f 26.8 6.4E+02 0.014 25.0 12.8 21 264-284 316-336 (359)
80 TIGR03796 NHPM_micro_ABC1 NHPM 26.5 8E+02 0.017 26.1 17.3 6 23-28 85-90 (710)
81 PF07290 DUF1449: Protein of u 26.0 5E+02 0.011 23.6 11.9 34 139-172 93-126 (202)
82 COG4615 PvdE ABC-type sideroph 25.9 7.5E+02 0.016 25.5 11.8 21 197-217 105-126 (546)
83 COG4720 Predicted membrane pro 25.9 2E+02 0.0044 25.7 5.9 51 104-156 15-73 (177)
84 PF15048 OSTbeta: Organic solu 25.8 79 0.0017 26.6 3.2 26 256-281 32-57 (125)
85 KOG3140 Predicted membrane pro 25.6 6E+02 0.013 24.3 11.5 88 190-283 128-218 (275)
86 PF14163 SieB: Superinfection 24.9 2.8E+02 0.0061 23.4 6.7 27 119-145 13-43 (151)
87 KOG4694 Predicted membrane pro 24.8 3.7E+02 0.008 23.6 7.1 67 218-296 86-153 (174)
88 PRK14414 membrane protein; Pro 24.1 4.1E+02 0.0089 24.4 7.8 82 141-222 9-102 (210)
89 COG2261 Predicted membrane pro 24.0 2E+02 0.0043 22.5 4.9 36 127-162 40-80 (82)
90 COG2891 MreD Cell shape-determ 23.1 5.2E+02 0.011 22.7 10.5 35 205-239 119-153 (167)
91 PF11241 DUF3043: Protein of u 23.1 4.6E+02 0.0099 23.3 7.6 18 153-170 118-135 (170)
92 PF05106 Phage_holin_3: Phage 23.0 3.4E+02 0.0074 21.7 6.4 14 86-99 5-18 (100)
93 PRK10520 rhtB homoserine/homos 23.0 5.2E+02 0.011 22.7 9.0 80 192-288 11-93 (205)
94 COG3105 Uncharacterized protei 22.8 1.3E+02 0.0029 25.5 4.0 23 139-161 7-29 (138)
95 TIGR02840 spore_YtaF putative 22.5 4.9E+02 0.011 23.5 8.0 82 207-302 17-99 (206)
96 TIGR00439 ftsX putative protei 22.4 4.6E+02 0.01 25.1 8.3 21 269-289 286-306 (309)
97 PF14012 DUF4229: Protein of u 22.1 3.4E+02 0.0074 20.2 6.7 28 141-168 34-61 (69)
98 PF00558 Vpu: Vpu protein; In 22.0 1.7E+02 0.0036 22.9 4.1 27 264-290 8-34 (81)
99 PF08229 SHR3_chaperone: ER me 21.8 2.5E+02 0.0054 25.5 5.8 21 272-292 147-167 (196)
100 PRK10929 putative mechanosensi 21.8 7.5E+02 0.016 28.5 10.7 55 109-165 885-942 (1109)
101 TIGR02203 MsbA_lipidA lipid A 21.4 8.8E+02 0.019 24.8 16.3 13 279-291 171-183 (571)
102 PF02687 FtsX: FtsX-like perme 21.4 3.8E+02 0.0081 20.4 7.3 11 272-282 102-112 (121)
103 PF15102 TMEM154: TMEM154 prot 21.1 25 0.00055 30.4 -0.6 14 302-315 102-115 (146)
104 TIGR00220 mscL large conductan 21.1 2.4E+02 0.0051 23.8 5.2 9 284-292 90-98 (127)
105 COG2610 GntT H+/gluconate symp 21.0 9.1E+02 0.02 24.7 13.5 26 265-291 177-203 (442)
106 COG3162 Predicted membrane pro 20.9 4.6E+02 0.01 21.3 6.9 25 266-290 66-90 (102)
107 TIGR02357 thia_yuaJ probable p 20.6 6E+02 0.013 22.5 13.8 18 127-144 39-56 (183)
108 PF04995 CcmD: Heme exporter p 20.4 2E+02 0.0043 19.5 3.9 34 264-297 7-40 (46)
109 PRK09430 djlA Dna-J like membr 20.4 1.5E+02 0.0032 28.1 4.3 16 146-161 17-32 (267)
110 PF01618 MotA_ExbB: MotA/TolQ/ 20.3 5E+02 0.011 21.5 7.5 11 222-232 70-80 (139)
111 COG1422 Predicted membrane pro 20.2 2.4E+02 0.0052 25.7 5.3 14 260-273 47-60 (201)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=218.03 Aligned_cols=148 Identities=24% Similarity=0.459 Sum_probs=131.5
Q ss_pred hHHHHHHHHHhcChhHHHHH-HHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 020345 89 LFPLMQWEATAFGRPVLAIV-LIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLF-RDRIH 166 (327)
Q Consensus 89 ~~~l~~wi~~~~G~p~~~~~-~i~~~~~~~~l~iP~~~l~i~aG~lFG~~~G~li~~lg~~lGa~i~f~igR~~-r~~i~ 166 (327)
.+.+++|++++ | .+++++ |++.+...++.++|++++++++|++||+++|++++++|+++|++++|+++|++ |++.+
T Consensus 35 ~~~l~~~i~~~-g-~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~ 112 (223)
T COG0398 35 PETLREWIQAY-G-ALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVL 112 (223)
T ss_pred HHHHHHHHHHc-C-chHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 78899999764 6 566666 66666666677899999999999999999999999999999999999999987 89999
Q ss_pred HHhhcchHHHHHHHHHHcCCchhhHHHHHHHhccc-chhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHH
Q 020345 167 QWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRL 242 (327)
Q Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~~g~~~v~l~Rl~P-~P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~ 242 (327)
++.+++++.+++++..+++ |++.+++.|++| +|++++||++|+|+|++++|.++|.+|++|++++|+++|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~----g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~ 185 (223)
T COG0398 113 KFVGGKEKVQRIDAGLERN----GFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA 185 (223)
T ss_pred HHhcccHHHHHHHHHHHhC----ChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8888777777777665554 789999999999 79999999999999999999999999999999999999973
No 2
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.84 E-value=4.9e-20 Score=151.98 Aligned_cols=120 Identities=28% Similarity=0.513 Sum_probs=102.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcchHHHHHHHHHHcCCchhhHHHHHHHhc
Q 020345 121 IPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFR-DRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRV 199 (327)
Q Consensus 121 iP~~~l~i~aG~lFG~~~G~li~~lg~~lGa~i~f~igR~~r-~~i~~~l~~~~~~~~l~~~~~~~~~~~g~~~v~l~Rl 199 (327)
+|++++++++|++||++.|++++.+|+++|+.++|++||+++ +...++..++++.+++++..+ ..++||+..+++.|+
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~l~~~~~ 79 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIER-WFQKYGFWVLFLSRF 79 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH-HHhhhhHHHHHHHHH
Confidence 699999999999999999999999999999999999999884 666666655444444222222 112258899999999
Q ss_pred cc-chhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHH
Q 020345 200 SP-FPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGR 241 (327)
Q Consensus 200 ~P-~P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~ 241 (327)
+| +|++++||++|+++||+++|+.++++|.+|++.+++++|+
T Consensus 80 ~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~ 122 (123)
T PF09335_consen 80 IPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY 122 (123)
T ss_pred HHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99 6999999999999999999999999999999999999996
No 3
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.80 E-value=8.3e-18 Score=152.73 Aligned_cols=154 Identities=18% Similarity=0.261 Sum_probs=115.1
Q ss_pred HHHHHHHHH-hcChhHHHHHHHHHHH-hhccccCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 90 FPLMQWEAT-AFGRPVLAIVLIASLA-LFPVFLIPSGPSMWLAGMIFG-----YGLGFVIIMVGTTIGMVLPYWVGLLFR 162 (327)
Q Consensus 90 ~~l~~wi~~-~~G~p~~~~~~i~~~~-~~~~l~iP~~~l~i~aG~lFG-----~~~G~li~~lg~~lGa~i~f~igR~~r 162 (327)
+++..+.+. .+++ ...++.+..+. ++...++|++.+++++|++-+ ++..++.+++|+++|+.+.|++||+++
T Consensus 4 ~~~~~~~~~~~~~~-~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G 82 (208)
T COG0586 4 ELLILWIQEGSLGY-LGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFG 82 (208)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555543 3442 22222222332 234459999999999999854 678889999999999999999999984
Q ss_pred -HHHHHHhhc----chHHHHHHHHHHcCCchhhHHHHHHHhcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHH
Q 020345 163 -DRIHQWLKR----WPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYI 237 (327)
Q Consensus 163 -~~i~~~l~~----~~~~~~l~~~~~~~~~~~g~~~v~l~Rl~P~P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v 237 (327)
+.++++.++ .++.++.++..++ ||.+.+++.|++|.-++++++.||+++||+++|.+.+++|.+.|..+++
T Consensus 83 ~~~l~~~~~~~~~~~~~l~~a~~~f~r----~G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~ 158 (208)
T COG0586 83 RKLLRKLWSYRLLKRKKLDKAELLFER----HGLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLT 158 (208)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHH----cCchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHH
Confidence 555554441 1222222233332 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 020345 238 YSGRLIRTLAD 248 (327)
Q Consensus 238 ~~G~~l~~l~~ 248 (327)
+.|+.+++..+
T Consensus 159 ~lGy~~G~~~~ 169 (208)
T COG0586 159 LLGYLLGEVID 169 (208)
T ss_pred HHHHHhccchH
Confidence 99999986554
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.79 E-value=7.6e-18 Score=154.09 Aligned_cols=124 Identities=16% Similarity=0.306 Sum_probs=99.9
Q ss_pred ccCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhc---chHHHHHHHHHHcCCc
Q 020345 119 FLIPSGPSMWLAGMIFG-------YGLGFVIIMVGTTIGMVLPYWVGLLF-RDRIHQWLKR---WPQQAAMLRLAAEGSW 187 (327)
Q Consensus 119 l~iP~~~l~i~aG~lFG-------~~~G~li~~lg~~lGa~i~f~igR~~-r~~i~~~l~~---~~~~~~l~~~~~~~~~ 187 (327)
.++|++.+.+++|++.+ ++..++++++|+++|+.++|++||++ ++.+.++.++ .++.++.++..++
T Consensus 47 ~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~~~~~~~~~~l~~~~~~~~r--- 123 (219)
T PRK10847 47 PFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQFYEK--- 123 (219)
T ss_pred CCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhccccccCCHHHHHHHHHHHHH---
Confidence 47899999999998865 45678899999999999999999988 4444432222 1122233333333
Q ss_pred hhhHHHHHHHhcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 020345 188 LHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTL 246 (327)
Q Consensus 188 ~~g~~~v~l~Rl~P~P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~l~~l 246 (327)
||.+.+++.|++|+-++++++++|+++||+++|++.+.+|.++|+.+++++|+.+++.
T Consensus 124 -~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~~ 181 (219)
T PRK10847 124 -HGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGTL 181 (219)
T ss_pred -cCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4778999999999767899999999999999999999999999999999999998864
No 5
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.62 E-value=4.3e-15 Score=139.41 Aligned_cols=144 Identities=22% Similarity=0.394 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhhccccCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHH
Q 020345 104 VLAIVLIASLALFPVFLIPSGPS-MWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLF-RDRIHQWLKRWPQQAAMLRL 181 (327)
Q Consensus 104 ~~~~~~i~~~~~~~~l~iP~~~l-~i~aG~lFG~~~G~li~~lg~~lGa~i~f~igR~~-r~~i~~~l~~~~~~~~l~~~ 181 (327)
...+.|++.|+....+.+||..+ .+.+|++||++.|++++..++++|+++||++++.+ |.++.+++..+..+...+ .
T Consensus 95 ~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~-~ 173 (275)
T KOG3140|consen 95 AVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQD-V 173 (275)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHH-H
Confidence 35567778888888999998776 89999999999999999999999999999999987 878877766543333222 2
Q ss_pred HHcCCchhhHHHHHHHhcccc-hhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHhhhhhhc
Q 020345 182 AAEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVK 250 (327)
Q Consensus 182 ~~~~~~~~g~~~v~l~Rl~P~-P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~l~~l~~~~ 250 (327)
..+.+ +-+.++++.|++|+ |.++.|+++++.+++++.|++++++|.+|..++++-.|+.++++.+.+
T Consensus 174 ~~~~~--~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~ 241 (275)
T KOG3140|consen 174 ELNRN--SLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSAS 241 (275)
T ss_pred Hhccc--chhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccc
Confidence 22221 13677999999995 999999999999999999999999999999999999999999876543
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.35 E-value=1.9e-11 Score=106.65 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=105.4
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhccccCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 91 PLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSM---WLAGMIFGYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQ 167 (327)
Q Consensus 91 ~l~~wi~~~~G~p~~~~~~i~~~~~~~~l~iP~~~l~---i~aG~lFG~~~G~li~~lg~~lGa~i~f~igR~~r~~i~~ 167 (327)
...++..+.++ ...+|+..++-..++|+|.+++. ...| +.++.-.+++++|+++|++++|++||+..+.+.+
T Consensus 8 ~~~~~~~~~~a---~~~Lf~vaF~eat~lP~~sE~~l~~m~~~~--~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 8 WTLSLMSQAYA---YAGLFIVAFLEATLLPVPSEVLLAPMLLLG--LNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhcCCChHHHHHHHHHcC--CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 44555555544 22345556666677899999873 3333 6788889999999999999999999988666554
Q ss_pred H-hhc-chHHHHHHHHHHcCCchhhHHHHHHHhcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHH
Q 020345 168 W-LKR-WPQQAAMLRLAAEGSWLHQFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLI 243 (327)
Q Consensus 168 ~-l~~-~~~~~~l~~~~~~~~~~~g~~~v~l~Rl~P~P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~l 243 (327)
. ... +.+ .++..++...++|.+.+++.=+.|+| ++++.++|..++++++|++..++|....-++.+++....
T Consensus 83 ~~~~~~~~~---~~~~~~~~~~ryg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~ 156 (161)
T COG1238 83 RWFPGSEEA---LEKLQEKWYRRYGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLG 156 (161)
T ss_pred HhhcchHHH---HHHHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 221 222 22332211223688999999999999 999999999999999999999999999988877766554
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=94.53 E-value=0.77 Score=38.26 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHH--cCCchhhHHHHHHHhcccch---hhHH
Q 020345 135 GYGLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQ--WLKRWPQQAAMLRLAA--EGSWLHQFRMVALFRVSPFP---YTIF 207 (327)
Q Consensus 135 G~~~G~li~~lg~~lGa~i~f~igR~~r~~i~~--~l~~~~~~~~l~~~~~--~~~~~~g~~~v~l~Rl~P~P---~~lv 207 (327)
+++..++++.+|+++...+.++.-+...+++.+ ++++.-+. ..++..+ +.-.++|+..+++.=.+|+| -+.-
T Consensus 15 ~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~-~~~k~~~~~~~i~kyg~~GL~lFVaIPlP~TG~wtg 93 (121)
T PF06695_consen 15 PPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEW-LEKKAEKKSKKIEKYGFWGLALFVAIPLPGTGAWTG 93 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHH
Confidence 467888888888888776666555543333221 11110000 0001111 00111477777777777887 3467
Q ss_pred HHHHHhcCCCchhHHHHHHHhhHHHH
Q 020345 208 NYAIVVTSMRFWPYLCGSVAGMVPEA 233 (327)
Q Consensus 208 ny~aG~t~i~~~~F~~~s~lG~lP~~ 233 (327)
+.++-+.+|+.++=+++..+|.+...
T Consensus 94 al~a~llg~~~~~~~~ai~~Gv~ia~ 119 (121)
T PF06695_consen 94 ALIASLLGMDKKKAFLAIFLGVLIAG 119 (121)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 77888899999999999888876543
No 8
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=89.03 E-value=9.8 Score=33.35 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 123 SGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP 154 (327)
Q Consensus 123 ~~~l~i~aG~lFG~~~G~li~~lg~~lGa~i~ 154 (327)
++..++++|++||||+|.+...+++.++..+.
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 56669999999999999999988888877654
No 9
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=86.28 E-value=17 Score=37.01 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 125 PSMWLAGMIFGYGLGFVIIMVGTTIG 150 (327)
Q Consensus 125 ~l~i~aG~lFG~~~G~li~~lg~~lG 150 (327)
+.+.++|++|||++|.+...++..+|
T Consensus 100 Ipi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 100 ILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34789999999999999999999888
No 10
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.56 E-value=1.3 Score=37.12 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=21.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCCcCCCCCcccccccCCCCCC
Q 020345 255 HMTTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEANGEETSTSTGSGFEMNKLPLERTK 318 (327)
Q Consensus 255 ~~s~~~~i~~iig~i~avv~~~~l~~~~kr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (327)
.++-..++..++|.++++++++++..|.-|+++|....+.+- .+.....|.-+..|+.|-|+
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p--~P~~~d~~~p~~~~~~~~~~ 121 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP--LPEEDDTDVPLSSVEIENPE 121 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-------------------------------
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCCCCcceeeecCCC
Confidence 344455677788888888888877777544443333222111 11112344445556666554
No 11
>PRK01844 hypothetical protein; Provisional
Probab=83.19 E-value=3 Score=31.67 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 136 YGLGFVIIMVGTTIGMVLPYWVGLL 160 (327)
Q Consensus 136 ~~~G~li~~lg~~lGa~i~f~igR~ 160 (327)
.|..+++.+++..+|..++|+++|+
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788999999999999984
No 12
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=81.98 E-value=31 Score=29.37 Aligned_cols=100 Identities=9% Similarity=0.030 Sum_probs=54.7
Q ss_pred HHHhcccc-hhhH-HH-HHHHhcCCCchhHHHHHHHhhHHHHHHHH-----HHHHHHhhhhh-----hcc-CCCcCch--
Q 020345 195 ALFRVSPF-PYTI-FN-YAIVVTSMRFWPYLCGSVAGMVPEAFIYI-----YSGRLIRTLAD-----VKY-GNYHMTT-- 258 (327)
Q Consensus 195 ~l~Rl~P~-P~~l-vn-y~aG~t~i~~~~F~~~s~lG~lP~~~l~v-----~~G~~l~~l~~-----~~~-~~~~~s~-- 258 (327)
++.-++|+ +... +. .++=+.|.+..--++++.++. |.+.... .+|+.+-+... ..+ ..+.++.
T Consensus 30 ~fig~~P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~n-Plt~~~i~~~~y~vG~~ll~~~~~~~~~~~~~~~~~~~~~~ 108 (154)
T PF09835_consen 30 VFIGFLPIFGLQTVLAIALALLFRLNKPAAILGTWISN-PLTIPPIYPLSYRVGSFLLGGPPEEFAALFEFDWSLMHWSD 108 (154)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHccHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhCCChhhhhhhcccccccchHHH
Confidence 33448884 5553 22 234467888888888888854 6655322 35655543322 100 0111111
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 020345 259 -------VEIVYNIISFIIAVLTIIAFTVYAKRALKELERGEAN 295 (327)
Q Consensus 259 -------~~~i~~iig~i~avv~~~~l~~~~kr~l~~~~~~~~~ 295 (327)
....+.+.+++.++++.+..++..+..+++.++++++
T Consensus 109 ~~~~~~~~~~~~~~G~~i~~~v~~~i~Y~l~~~~~~~~r~~r~~ 152 (154)
T PF09835_consen 109 LLESLWEFGLPFLLGSLILGIVLGIISYFLVYFLVRKYRKRRRK 152 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1123445567777777777777777777777665543
No 13
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=77.98 E-value=72 Score=31.16 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=10.4
Q ss_pred cCChHHHHHHHHHHHH
Q 020345 120 LIPSGPSMWLAGMIFG 135 (327)
Q Consensus 120 ~iP~~~l~i~aG~lFG 135 (327)
.+|...+..++|+.+.
T Consensus 57 alp~pl~~~~~g~~L~ 72 (340)
T PF12794_consen 57 ALPLPLLLLAIGYLLQ 72 (340)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466666777777665
No 14
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=77.69 E-value=7.2 Score=33.66 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 122 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP 154 (327)
Q Consensus 122 P~~~l~i~aG~lFG~~~G~li~~lg~~lGa~i~ 154 (327)
|+.....++|++||+..|++...+|..+++.+.
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 356778999999999999999999999988854
No 15
>PRK00523 hypothetical protein; Provisional
Probab=76.28 E-value=6.5 Score=29.88 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020345 138 LGFVIIMVGTTIGMVLPYWVGLL 160 (327)
Q Consensus 138 ~G~li~~lg~~lGa~i~f~igR~ 160 (327)
..+++.+++..+|..++|+++|+
T Consensus 6 l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888999999999984
No 16
>PRK01637 hypothetical protein; Reviewed
Probab=74.65 E-value=29 Score=32.82 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=31.4
Q ss_pred hhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 020345 204 YTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTL 246 (327)
Q Consensus 204 ~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~l~~l 246 (327)
+.++.+...-.++++++-+.+++++.+-|.+.-...+..+.++
T Consensus 187 f~~lY~~~P~~k~~~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~ 229 (286)
T PRK01637 187 FWLLYSVVPNKKVPFRHALVGALVAALLFELGKKGFALYITTF 229 (286)
T ss_pred HHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555556789999999999999888887766666666554
No 17
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.31 E-value=11 Score=28.58 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 020345 137 GLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWP 173 (327)
Q Consensus 137 ~~G~li~~lg~~lGa~i~f~igR~~r~~i~~~l~~~~ 173 (327)
|.+.++..++-..|...+||++|.. ..+.++++|
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~---~~k~lk~NP 37 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQ---MKKQLKDNP 37 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhCC
Confidence 5566677777778888889999742 334455544
No 18
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=67.07 E-value=21 Score=33.05 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=14.4
Q ss_pred chhHHHHHHHhhHHHHHHHHHHH
Q 020345 218 FWPYLCGSVAGMVPEAFIYIYSG 240 (327)
Q Consensus 218 ~~~F~~~s~lG~lP~~~l~v~~G 240 (327)
+++|+.-.++|.+.+.++-...|
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~ 30 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIG 30 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777766665443333
No 19
>PRK13661 hypothetical protein; Provisional
Probab=67.01 E-value=22 Score=31.82 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 122 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLP 154 (327)
Q Consensus 122 P~~~l~i~aG~lFG~~~G~li~~lg~~lGa~i~ 154 (327)
|++.+..+.|++||+..|++...+|..+++.+.
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 456778889999999999999999999988763
No 20
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.54 E-value=9.4 Score=28.41 Aligned_cols=22 Identities=14% Similarity=0.513 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH
Q 020345 142 IIMVGTTIGMVLPYWVGLL-FRD 163 (327)
Q Consensus 142 i~~lg~~lGa~i~f~igR~-~r~ 163 (327)
+.+++.++|..++|+++|+ +.+
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999984 443
No 21
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=64.84 E-value=5.2 Score=33.48 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 261 IVYNIISFIIAVLTIIAFTVYAKRALKE 288 (327)
Q Consensus 261 ~i~~iig~i~avv~~~~l~~~~kr~l~~ 288 (327)
|+++++.+++++++++++.+..||+.|+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555444455555555555666666665
No 22
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=64.17 E-value=81 Score=31.51 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccchhchHHHHHHHHHh
Q 020345 55 RWIRTLALCILLVIIILIFLKWGVPFLFEKVPIVLFPLMQWEATA 99 (327)
Q Consensus 55 ~W~k~l~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~wi~~~ 99 (327)
+|...++.+++++++++..+ ++.+. +.. .+.+..|+--+
T Consensus 240 k~~~~~i~~~i~~~~~~~~~-~~~~~--~~~---~~~~~~W~l~n 278 (380)
T TIGR00261 240 KVLSYLIAISIILLFVMISF-YLNGF--EFL---YKNLKLWILSN 278 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCcH--HHH---HHHHHHHHHHH
Confidence 55555566666666662222 23321 222 56777887544
No 23
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=62.56 E-value=1.2e+02 Score=32.29 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 261 IVYNIISFIIAVLTIIAFTVYAKRALKE 288 (327)
Q Consensus 261 ~i~~iig~i~avv~~~~l~~~~kr~l~~ 288 (327)
+...++++++++++..++++..++..++
T Consensus 313 ~~~~~i~~~v~~~v~~v~t~~~~~~~~~ 340 (639)
T PRK15083 313 YFANIASVAAAMAVSFVVSAILLKTSKV 340 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445567777777777777666655554
No 24
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.98 E-value=46 Score=27.43 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=11.4
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 020345 220 PYLCGSVAGMVPEAFIYIYSGRLIRTLA 247 (327)
Q Consensus 220 ~F~~~s~lG~lP~~~l~v~~G~~l~~l~ 247 (327)
.|+.++++|. .+|..+..++
T Consensus 51 efIsGilVGa--------~iG~llD~~a 70 (116)
T COG5336 51 EFISGILVGA--------GIGWLLDKFA 70 (116)
T ss_pred HHHHHHHHHH--------HHHHHHHHhc
Confidence 3555555554 5666666654
No 25
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=60.55 E-value=24 Score=29.23 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=20.9
Q ss_pred ccCChHH--HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 020345 119 FLIPSGP--SMWLAGMIFG--YGLGFVIIMVGTTIGMV 152 (327)
Q Consensus 119 l~iP~~~--l~i~aG~lFG--~~~G~li~~lg~~lGa~ 152 (327)
+|+|++- ...+++.++| ....++...+|..++++
T Consensus 83 IPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 83 IPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred CCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4677544 3555666776 35666667777766654
No 26
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=58.71 E-value=30 Score=28.90 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 127 MWLAGMIFGYGLG--FVIIMVGTTIGMVLPYWVGLLFRDRI 165 (327)
Q Consensus 127 ~i~aG~lFG~~~G--~li~~lg~~lGa~i~f~igR~~r~~i 165 (327)
.+++|++.|...+ -..+.+++.+|..++|++.|++++..
T Consensus 81 ~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~ 121 (135)
T PF04246_consen 81 ALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRL 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555554444 57778888999999999999875443
No 27
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=58.29 E-value=13 Score=34.13 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhhhhccCCCc---C--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccccCcCCcCC
Q 020345 233 AFIYIYSGRLIRTLADVKYGNYH---M--TTVEIVYNIISFIIAVLTIIAFTVYAKRAL-----KELERGEANGEETSTS 302 (327)
Q Consensus 233 ~~l~v~~G~~l~~l~~~~~~~~~---~--s~~~~i~~iig~i~avv~~~~l~~~~kr~l-----~~~~~~~~~~~~~~~~ 302 (327)
++++..+++.+.+=.+..-+.+. . .-..+++.+++.+++|+++++++.++|+.. +-.++.+++.+|-=+.
T Consensus 6 tli~~lv~rs~~tPl~~~Ia~d~~~~~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKqe~~e~~tP 85 (221)
T PF08374_consen 6 TLIEELVRRSLETPLDRNIAGDPASSRSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQENSEWVTP 85 (221)
T ss_pred HHHHHHHHhhccCCCcCcccCCCCccccccceeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhcccccccccCC
Confidence 56777777777633222111111 1 112344556666777777777777776333 1123333323444455
Q ss_pred CCCcccccc
Q 020345 303 TGSGFEMNK 311 (327)
Q Consensus 303 ~~~~~~~~~ 311 (327)
.+.+-|.++
T Consensus 86 n~~nkq~k~ 94 (221)
T PF08374_consen 86 NQENKQKKK 94 (221)
T ss_pred Cccchhhcc
Confidence 777777754
No 28
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=54.62 E-value=2.6e+02 Score=28.82 Aligned_cols=70 Identities=13% Similarity=-0.003 Sum_probs=37.2
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHhhhhhhccCCCc------C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020345 220 PYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYH------M-TTVEIVYNIISFIIAVLTIIAFTVYAKRALKELERG 292 (327)
Q Consensus 220 ~F~~~s~lG~lP~~~l~v~~G~~l~~l~~~~~~~~~------~-s~~~~i~~iig~i~avv~~~~l~~~~kr~l~~~~~~ 292 (327)
+|+.++.+|....-.+....|-..... .+.-- . +++ .+++++++..+...++..+.||...|.+++
T Consensus 400 ~~i~a~~iG~avgGa~~~~~gv~~~a~----~gg~~~p~~~~~~~~~---~~~~~~~vG~~v~a~~~~~~k~~~~~~~~~ 472 (482)
T PRK11404 400 PMITANTLAGGITGVLVIAFGIKRLAP----GLGIFDPLIGLMSPVG---SFYLVLAIGLALNISFIIVLKGLWLRRKAK 472 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccc----ccCeeeecHHhhccHH---HHHHHHHHHHHHHHHHHHHHhhHhhhhhHH
Confidence 777777777777666666666433211 11111 1 222 334556666666666666666665555444
Q ss_pred cccC
Q 020345 293 EANG 296 (327)
Q Consensus 293 ~~~~ 296 (327)
..++
T Consensus 473 ~~~~ 476 (482)
T PRK11404 473 AAQQ 476 (482)
T ss_pred hhhh
Confidence 3333
No 29
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=54.05 E-value=1.3e+02 Score=29.52 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHh
Q 020345 231 PEAFIYIYSGRLIR 244 (327)
Q Consensus 231 P~~~l~v~~G~~l~ 244 (327)
..+++.+|+|..+.
T Consensus 117 i~t~il~y~G~~~~ 130 (356)
T COG4956 117 ILTIILAYFGFQLA 130 (356)
T ss_pred HHHHHHHHHhhHHh
Confidence 34566777776654
No 30
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.10 E-value=49 Score=28.63 Aligned_cols=37 Identities=16% Similarity=0.481 Sum_probs=25.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 128 WLAGMIFGYG-LGFVIIMVGTTIGMVLPYWVGLLFRDR 164 (327)
Q Consensus 128 i~aG~lFG~~-~G~li~~lg~~lGa~i~f~igR~~r~~ 164 (327)
+++.++++.. ..=.++.+++.+|..++|++.|.+.++
T Consensus 90 ~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 90 FLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444432 233678899999999999999876433
No 31
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=52.96 E-value=2.7e+02 Score=28.51 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020345 263 YNIISFIIAVLTIIAFTVYAKRALKELERGEA 294 (327)
Q Consensus 263 ~~iig~i~avv~~~~l~~~~kr~l~~~~~~~~ 294 (327)
+..+++..+++..++..++.+|.-||++++.+
T Consensus 173 il~VgIP~~~ig~l~~~l~~~~~gk~l~~Dp~ 204 (443)
T PRK12489 173 ILAVTIPATLIGVLAAALWSLRRGKDLDKDPE 204 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCHH
Confidence 34556767777777777777777777766543
No 32
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=52.85 E-value=50 Score=29.95 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=17.8
Q ss_pred chhHHHHHHHhhHHHHHHHHHHH
Q 020345 218 FWPYLCGSVAGMVPEAFIYIYSG 240 (327)
Q Consensus 218 ~~~F~~~s~lG~lP~~~l~v~~G 240 (327)
+|+|++++.+.++.|.++++.-+
T Consensus 161 ~~K~~lv~~~sm~lWi~v~i~t~ 183 (226)
T COG4858 161 TWKYLLVAVLSMLLWIAVMIATV 183 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788889999999885543
No 33
>PRK11677 hypothetical protein; Provisional
Probab=52.54 E-value=16 Score=31.17 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020345 140 FVIIMVGTTIGMVLPYWVGLLF 161 (327)
Q Consensus 140 ~li~~lg~~lGa~i~f~igR~~ 161 (327)
++++++|-++|.+++|+++|+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888999999999999976
No 34
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=52.22 E-value=40 Score=23.03 Aligned_cols=17 Identities=41% Similarity=0.343 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhccccC
Q 020345 280 VYAKRALKELERGEANG 296 (327)
Q Consensus 280 ~~~kr~l~~~~~~~~~~ 296 (327)
+-.|+..++++++++.+
T Consensus 27 ~~~r~~~~~l~~~~~r~ 43 (46)
T PF04995_consen 27 RRRRRLRKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33445555555554444
No 35
>PRK09609 hypothetical protein; Provisional
Probab=52.02 E-value=40 Score=32.71 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 126 SMWLAGMIFGYGLGFVIIMVGTTIG 150 (327)
Q Consensus 126 l~i~aG~lFG~~~G~li~~lg~~lG 150 (327)
.+.++|++|||+.|.++..+..++|
T Consensus 46 PviI~G~LFGPv~G~ivG~lsDLLs 70 (312)
T PRK09609 46 PIKITGFIFGPIVGFFTGLLSDLIS 70 (312)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3677888888888776665555544
No 36
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=51.80 E-value=2.2e+02 Score=27.13 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHcCCchhhHHHHHHHhcccc-hhhHHHHHHHhcCCCch
Q 020345 141 VIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRWPQQAAMLRLAAEGSWLHQFRMVALFRVSPF-PYTIFNYAIVVTSMRFW 219 (327)
Q Consensus 141 li~~lg~~lGa~i~f~igR~~r~~i~~~l~~~~~~~~l~~~~~~~~~~~g~~~v~l~Rl~P~-P~~lvny~aG~t~i~~~ 219 (327)
....+|..+++.+-.++. +++++|+++++.. . .-+...+++-++|+ +...++.+.++.+-.-.
T Consensus 19 p~ll~g~~l~~~i~~~v~---~~~~~~~l~~~~~-~------------~~~~a~~~G~~~p~C~c~~~P~~~~l~~~Ga~ 82 (307)
T PF03773_consen 19 PFLLLGFLLSGLIQVFVP---REKVARWLGRSGF-K------------GILLASLLGALLPVCSCGAVPVARGLLRKGAP 82 (307)
T ss_pred HHHHHHHHHHHHHHHHCC---HHHHHHHcCCCcc-h------------HHHHHHHHHhccCCCcccHHHHHHHHHHCCCC
Confidence 344455555555444333 4567776665321 1 12456788889996 99999999999877666
Q ss_pred hHHHHHHHhhHHHH
Q 020345 220 PYLCGSVAGMVPEA 233 (327)
Q Consensus 220 ~F~~~s~lG~lP~~ 233 (327)
.-...+++-..|..
T Consensus 83 ~~~~~aFl~a~p~~ 96 (307)
T PF03773_consen 83 LGAAMAFLLASPLL 96 (307)
T ss_pred cchhHHHHHhhHHh
Confidence 55555555444543
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=50.37 E-value=37 Score=27.15 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020345 264 NIISFIIAVLTIIAFTVYAK 283 (327)
Q Consensus 264 ~iig~i~avv~~~~l~~~~k 283 (327)
+++++++++++++.--.-++
T Consensus 7 llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHhhhhhH
Confidence 33444455544444333333
No 38
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=50.08 E-value=1.1e+02 Score=28.01 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=26.8
Q ss_pred hchHHHHHHHHHhcChhHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Q 020345 87 IVLFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPSGPSMWLAGMIF 134 (327)
Q Consensus 87 ~~~~~l~~wi~~~~G~p~~~~~~i~~~~~~~~l~iP~~~l~i~aG~lF 134 (327)
+..+.+.+|++++ | .+ .++..-+.| .+|.++++.++|..-
T Consensus 119 ~~~~~~~~~~~~~-g-~~----~i~~lrl~P--~~P~~lvn~aaglt~ 158 (223)
T COG0398 119 EKVQRIDAGLERN-G-FW----AILLLRLIP--IFPFDLVNYAAGLTG 158 (223)
T ss_pred HHHHHHHHHHHhC-C-hH----HHHHHHHhh--cCCHHHHHHHHhccC
Confidence 4577888898775 5 11 222334556 689999999988753
No 39
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=49.79 E-value=15 Score=31.57 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 122 PSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVL 153 (327)
Q Consensus 122 P~~~l~i~aG~lFG~~~G~li~~lg~~lGa~i 153 (327)
|.....+++|+++||+.|.+...+...++..+
T Consensus 30 ~~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 30 FSFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455778899999999988877766666554
No 40
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=49.61 E-value=1.8e+02 Score=25.36 Aligned_cols=45 Identities=29% Similarity=0.479 Sum_probs=26.4
Q ss_pred ccccCChHHH-HHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHH
Q 020345 117 PVFLIPSGPS-MWLAGMIFGYGLGFVII----MVGT-TIGMVLPYWVGLLF 161 (327)
Q Consensus 117 ~~l~iP~~~l-~i~aG~lFG~~~G~li~----~lg~-~lGa~i~f~igR~~ 161 (327)
+.+.+|++.+ .+++|++|-...=...+ .+|+ .+|+.++|-+.+++
T Consensus 65 t~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~ 115 (150)
T PF09512_consen 65 TLLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLF 115 (150)
T ss_pred CHHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4466788887 77888877543222222 3333 45666667666654
No 41
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=45.92 E-value=1.9e+02 Score=24.62 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 020345 263 YNIISFIIAVLTIIAFTVYAKRALKELERGEANG 296 (327)
Q Consensus 263 ~~iig~i~avv~~~~l~~~~kr~l~~~~~~~~~~ 296 (327)
..+.++++..+..+.-.++-||..+++.++-..+
T Consensus 76 ~~l~~~vi~~v~~Iisa~f~kks~~~l~~~tg~~ 109 (139)
T PF06195_consen 76 SFLAGLVILWVLFIISAYFLKKSYDLLAEYTGVD 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3345566666667777788899998887765444
No 42
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=42.77 E-value=28 Score=34.86 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=34.8
Q ss_pred cCCCchhHHHHHHHhhHHHHH-HHHHHHHHHhhhhhhccCCCcCchHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 020345 214 TSMRFWPYLCGSVAGMVPEAF-IYIYSGRLIRTLADVKYGNYHMTTVE-IVYNIISFIIAVLTIIAF-TVYAKRALKELE 290 (327)
Q Consensus 214 t~i~~~~F~~~s~lG~lP~~~-l~v~~G~~l~~l~~~~~~~~~~s~~~-~i~~iig~i~avv~~~~l-~~~~kr~l~~~~ 290 (327)
.|...++|.++.+++..-+.. +.=+.|-..+..+... .+|.+ |.-.+...++.++..+.+ +++.||..||+.
T Consensus 131 krLgmn~~~l~~l~~ls~gvmN~~PWGGPt~Raas~Lg-----~d~~el~~pliP~~i~Gl~~vl~lA~~lG~kErkRlg 205 (433)
T COG2851 131 KRLGMNPYLLALLATLSAGVMNMLPWGGPTARAASVLG-----VDPAELFVPLIPIQIIGLVLVLALAWLLGKKERKRLG 205 (433)
T ss_pred HHcCCcHHHHHHHHHHhhhheecCCCCCcHHHHHHHhC-----CCHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 455666676666554322111 1123444444332221 12211 112222333333333334 456788878777
Q ss_pred hccccC
Q 020345 291 RGEANG 296 (327)
Q Consensus 291 ~~~~~~ 296 (327)
+.+.++
T Consensus 206 ~~~~~~ 211 (433)
T COG2851 206 VIDLSE 211 (433)
T ss_pred hccCch
Confidence 666554
No 43
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.23 E-value=49 Score=23.90 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhcccc
Q 020345 280 VYAKRALKELERGEAN 295 (327)
Q Consensus 280 ~~~kr~l~~~~~~~~~ 295 (327)
+-.|+..++++++-++
T Consensus 44 ~~~r~~~~~~~k~l~~ 59 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKK 59 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555655554333
No 44
>PF14143 YrhC: YrhC-like protein
Probab=41.17 E-value=1.6e+02 Score=22.43 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHh
Q 020345 233 AFIYIYSGRLIR 244 (327)
Q Consensus 233 ~~l~v~~G~~l~ 244 (327)
...+.|+|..+.
T Consensus 20 vs~FlYiG~viP 31 (72)
T PF14143_consen 20 VSTFLYIGTVIP 31 (72)
T ss_pred HHHHHHHHhhCC
Confidence 345778888875
No 45
>PRK11677 hypothetical protein; Provisional
Probab=39.85 E-value=20 Score=30.49 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 261 IVYNIISFIIAVLTIIAFTVYAKRAL 286 (327)
Q Consensus 261 ~i~~iig~i~avv~~~~l~~~~kr~l 286 (327)
|++.++++++++++..++.++..+..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchh
Confidence 56677778877777777777755443
No 46
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.82 E-value=38 Score=28.72 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 259 VEIVYNIISFIIAVLTIIAFTVYAKRALKE 288 (327)
Q Consensus 259 ~~~i~~iig~i~avv~~~~l~~~~kr~l~~ 288 (327)
..|.+.++|+++.+++..++.++.++.+++
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 457788889999999888888888777665
No 47
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=38.53 E-value=75 Score=27.50 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020345 141 VIIMVGTTIGMVLPYWVGLLF 161 (327)
Q Consensus 141 li~~lg~~lGa~i~f~igR~~ 161 (327)
..+.+++.+|..++|++.|++
T Consensus 104 ~~~~~~~~~g~~~g~~~~r~~ 124 (154)
T PRK10862 104 LAALCGALLGGVGGFLLARGL 124 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888866
No 48
>COG4732 Predicted membrane protein [Function unknown]
Probab=37.84 E-value=52 Score=28.80 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=21.4
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 121 IPSG-PSMWLAGMIFGYGLGFVIIMVGTTI 149 (327)
Q Consensus 121 iP~~-~l~i~aG~lFG~~~G~li~~lg~~l 149 (327)
.|.+ .+++++|.+.|||++...+.+-+.+
T Consensus 37 aP~qh~VNvlAgV~~GPwyala~A~~~sli 66 (177)
T COG4732 37 APMQHFVNVLAGVMMGPWYALAMALVTSLI 66 (177)
T ss_pred CcHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 4544 4599999999999998776655443
No 49
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=37.23 E-value=59 Score=25.65 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020345 54 IRWIRTLALCILLVIIILIF 73 (327)
Q Consensus 54 ~~W~k~l~l~~ll~~~~~~~ 73 (327)
.+|.+.+.+.++++.++.++
T Consensus 30 p~W~~p~m~~lmllGL~WiV 49 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIV 49 (87)
T ss_pred CccHHHHHHHHHHHHHHHHh
Confidence 44666655555554444333
No 50
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=37.00 E-value=1.2e+02 Score=20.68 Aligned_cols=11 Identities=55% Similarity=0.751 Sum_probs=4.5
Q ss_pred HHHHHHHHhcc
Q 020345 283 KRALKELERGE 293 (327)
Q Consensus 283 kr~l~~~~~~~ 293 (327)
|+..+++++.+
T Consensus 31 r~~~~~l~~~~ 41 (45)
T TIGR03141 31 RRLLRELRRLE 41 (45)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 51
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=36.89 E-value=69 Score=25.15 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=8.0
Q ss_pred HHHHHHhccccCcCCcCCCCC
Q 020345 285 ALKELERGEANGEETSTSTGS 305 (327)
Q Consensus 285 ~l~~~~~~~~~~~~~~~~~~~ 305 (327)
.++..++++.+.|+...+.+.
T Consensus 41 ~~~~~~~d~~~~e~~~~a~~~ 61 (84)
T PRK00191 41 EVKEMSKDDQTPEQQQQQPQQ 61 (84)
T ss_pred HHhcccccccchhhhhhhhhh
Confidence 333333333333333333333
No 52
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=36.34 E-value=1.4e+02 Score=24.63 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020345 55 RWIRTLALCILLVIIILI 72 (327)
Q Consensus 55 ~W~k~l~l~~ll~~~~~~ 72 (327)
.|+.+++.++++++.+.+
T Consensus 40 pwK~I~la~~Lli~G~~l 57 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVL 57 (115)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577766555555444333
No 53
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=35.45 E-value=2.2e+02 Score=22.43 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=32.8
Q ss_pred HHHHHHHhhHHHHHH-HHHHHHHHhhhhhhccCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 221 YLCGSVAGMVPEAFI-YIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRA 285 (327)
Q Consensus 221 F~~~s~lG~lP~~~l-~v~~G~~l~~l~~~~~~~~~~s~~~~i~~iig~i~avv~~~~l~~~~kr~ 285 (327)
|-...++|.+...+. .....+.+.++.|..+++... .=+..-.++.+++++...|..+++
T Consensus 24 ~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W-----~~fg~~~vVGvvLlv~viwLl~~A 84 (87)
T PF11190_consen 24 KDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTW-----GDFGATVVVGVVLLVFVIWLLTKA 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccH-----HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 444556666655554 444567778888887765422 212223445555555555655543
No 54
>PRK10034 fructuronate transporter; Provisional
Probab=34.85 E-value=5.1e+02 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=14.1
Q ss_pred HHHHHHHh---cCCCchhHHHHHHHhh
Q 020345 206 IFNYAIVV---TSMRFWPYLCGSVAGM 229 (327)
Q Consensus 206 lvny~aG~---t~i~~~~F~~~s~lG~ 229 (327)
..+.+..+ +++|.-++..+...|.
T Consensus 124 laPi~~~lak~~~~s~~~~~~~l~~gl 150 (447)
T PRK10034 124 LAPLVIVIAAEAKIPFLKLAIPAVAAA 150 (447)
T ss_pred hHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 44444443 5677777777655554
No 55
>COG4732 Predicted membrane protein [Function unknown]
Probab=33.82 E-value=3.3e+02 Score=23.93 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=13.8
Q ss_pred hccccCChHHH-HHHHHHHH
Q 020345 116 FPVFLIPSGPS-MWLAGMIF 134 (327)
Q Consensus 116 ~~~l~iP~~~l-~i~aG~lF 134 (327)
.+++.+|+++. .+++|..+
T Consensus 73 gtvfA~pGsi~GaLlA~~fy 92 (177)
T COG4732 73 GTVFAFPGSIPGALLAGAFY 92 (177)
T ss_pred CCeeecCCCchHHHHHHHHH
Confidence 45678898887 66777765
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.79 E-value=76 Score=26.59 Aligned_cols=9 Identities=22% Similarity=0.582 Sum_probs=5.7
Q ss_pred HHHHHHHHH
Q 020345 152 VLPYWVGLL 160 (327)
Q Consensus 152 ~i~f~igR~ 160 (327)
.+.|++.|.
T Consensus 83 li~y~irR~ 91 (122)
T PF01102_consen 83 LISYCIRRL 91 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566777654
No 57
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=33.67 E-value=69 Score=27.83 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020345 125 PSMWLAGMIFGYGLGFVIIMV 145 (327)
Q Consensus 125 ~l~i~aG~lFG~~~G~li~~l 145 (327)
.+++++|.+.|||++...+.+
T Consensus 33 ~iNviaaVlLGP~ya~~~Af~ 53 (150)
T PF09512_consen 33 MINVIAAVLLGPWYAVAMAFI 53 (150)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 346777777777766544443
No 58
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=33.21 E-value=4.8e+02 Score=25.61 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Q 020345 134 FGYGLGFVIIMVGTTIGMVLPYWVG--LLFRDRIHQWL 169 (327)
Q Consensus 134 FG~~~G~li~~lg~~lGa~i~f~ig--R~~r~~i~~~l 169 (327)
-|...-..++.+|....++++|++| |.-.+|+-+++
T Consensus 91 VGllNTl~Va~~gIi~atIiGfliGIaRLS~NWLi~kl 128 (397)
T COG4597 91 VGLLNTLLVAALGIITATIIGFLIGIARLSDNWLIRKL 128 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 3555556778888888899999987 33355654433
No 59
>PRK11281 hypothetical protein; Provisional
Probab=33.13 E-value=8.1e+02 Score=28.23 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=16.6
Q ss_pred hhHHHHHHHhhHHHHHH-HHHHHHHHhhh
Q 020345 219 WPYLCGSVAGMVPEAFI-YIYSGRLIRTL 246 (327)
Q Consensus 219 ~~F~~~s~lG~lP~~~l-~v~~G~~l~~l 246 (327)
.++++.+++-.+|..++ .+.+|+.-...
T Consensus 684 ~~~~~~~~l~~~P~~l~~l~~~GY~yTa~ 712 (1113)
T PRK11281 684 LRLVVRTVLTIAPIALIVLVVLGYYYTAL 712 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454555666676664 66778766543
No 60
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.03 E-value=37 Score=28.45 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020345 142 IIMVGTTIGMVLPYWVGLLF 161 (327)
Q Consensus 142 i~~lg~~lGa~i~f~igR~~ 161 (327)
++++|.++|.+++|+++|+.
T Consensus 1 y~~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 35788889999999999976
No 61
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=32.95 E-value=1.2e+02 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020345 267 SFIIAVLTIIAFTVYAK 283 (327)
Q Consensus 267 g~i~avv~~~~l~~~~k 283 (327)
-+++++.+.+++.+|-|
T Consensus 12 vIil~If~~iGl~IyQk 28 (49)
T PF11044_consen 12 VIILGIFAWIGLSIYQK 28 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566667778888854
No 62
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=32.68 E-value=1.4e+02 Score=26.76 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=14.8
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHH
Q 020345 218 FWPYLCGSVAGMVPEAFIYIYSGR 241 (327)
Q Consensus 218 ~~~F~~~s~lG~lP~~~l~v~~G~ 241 (327)
++++++.+++.++.|.++++...-
T Consensus 146 ~~k~~~~~~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 146 WWKYILISVLAMVLWIVIFVLTSF 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777776665554
No 63
>PRK01844 hypothetical protein; Provisional
Probab=32.13 E-value=1.3e+02 Score=22.90 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 020345 267 SFIIAVLTIIAFTVYAKRALKELER 291 (327)
Q Consensus 267 g~i~avv~~~~l~~~~kr~l~~~~~ 291 (327)
.++..++..++-.+.+||..++..+
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556667777766544
No 64
>PRK05415 hypothetical protein; Provisional
Probab=32.10 E-value=4.4e+02 Score=26.04 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=28.2
Q ss_pred hHHHHHHHhcccchhh-----------HHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHhh
Q 020345 190 QFRMVALFRVSPFPYT-----------IFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRT 245 (327)
Q Consensus 190 g~~~v~l~Rl~P~P~~-----------lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~l~~ 245 (327)
....-.+.-++|+|.. .++=++-+-+++...+-..-++-.+-.+..++-......+
T Consensus 210 a~~~a~~vAvsPla~vD~l~v~~~n~rmI~~ia~lYG~~lg~~~~~rL~r~V~~~la~~G~~e~~~~ 276 (341)
T PRK05415 210 AAESALVTAVSPLALVDMAFIAWRNLRLIRRIAELYGIELGYLSRIRLFRLVLANIAFAGASELVDD 276 (341)
T ss_pred HHHHHHhheeCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666775321 1233344556666666555555555555555544444433
No 65
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=32.04 E-value=2.5e+02 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020345 266 ISFIIAVLTIIAFTVYAKRALKELER 291 (327)
Q Consensus 266 ig~i~avv~~~~l~~~~kr~l~~~~~ 291 (327)
.|+..-++..+...+|.+++-++.++
T Consensus 58 ~g~~~~~~~~~l~~~Yv~~An~~~D~ 83 (91)
T PF04341_consen 58 LGLGQIVFAWVLTWLYVRRANREFDP 83 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCH
Confidence 34555555666666777666554443
No 66
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=31.36 E-value=82 Score=24.86 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=4.7
Q ss_pred ccCcCCcCCCC
Q 020345 294 ANGEETSTSTG 304 (327)
Q Consensus 294 ~~~~~~~~~~~ 304 (327)
+.+|++++++.
T Consensus 61 knee~~~~~sr 71 (87)
T PF10883_consen 61 KNEENTRRLSR 71 (87)
T ss_pred HhHHhhccCCH
Confidence 33444444443
No 67
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=31.17 E-value=3.5e+02 Score=23.47 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020345 137 GLGFVIIMVGTTIGMVLPYWVGLLFRDRIHQWL 169 (327)
Q Consensus 137 ~~G~li~~lg~~lGa~i~f~igR~~r~~i~~~l 169 (327)
+.|..+..+|..+.. +.+++.|++.+...+++
T Consensus 141 ~~~i~~~glGlll~~-~~~~l~k~~~~~~~~y~ 172 (181)
T PF08006_consen 141 FFGIGLFGLGLLLIV-ITFYLTKLFIKLTVRYL 172 (181)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345555555544433 45666776655444443
No 68
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=30.94 E-value=2.6e+02 Score=21.92 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=23.1
Q ss_pred cCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 120 LIPSGPSMWLAGMI-FGYGLGFVIIMVGTTIGMVLPYWVG 158 (327)
Q Consensus 120 ~iP~~~l~i~aG~l-FG~~~G~li~~lg~~lGa~i~f~ig 158 (327)
.+|.++++.++|.. ..++.=++.+.+|...-..+..++|
T Consensus 82 ~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G 121 (123)
T PF09335_consen 82 GLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLG 121 (123)
T ss_pred HccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999998888864 2334444455566655555444443
No 69
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=30.48 E-value=5.8e+02 Score=25.73 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHH
Q 020345 206 IFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIY 238 (327)
Q Consensus 206 lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~ 238 (327)
+.-|+.|..|.+..+|..+.++|.+-..+...+
T Consensus 146 ~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~ 178 (459)
T PF10337_consen 146 VFIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTY 178 (459)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHh
Confidence 456777777888877888887777655544443
No 70
>PRK09821 putative transporter; Provisional
Probab=30.32 E-value=6.1e+02 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.047 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 264 NIISFIIAVLTIIAFTVYAKRALKELE 290 (327)
Q Consensus 264 ~iig~i~avv~~~~l~~~~kr~l~~~~ 290 (327)
...|+++++...+..++|.|+.-||..
T Consensus 179 ~l~Giivaip~~i~g~~~~~~~~~~~~ 205 (454)
T PRK09821 179 TIIGIAISIPVGIVGYFAAKIINRRQY 205 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345777777777777888876666554
No 71
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=30.19 E-value=9e+02 Score=27.86 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=16.3
Q ss_pred CChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 020345 121 IPSGPSMWLAGM-IFGYGLGFVIIMVGTTIGMV 152 (327)
Q Consensus 121 iP~~~l~i~aG~-lFG~~~G~li~~lg~~lGa~ 152 (327)
+|...+.+++|+ +++.|......-+|..+.+.
T Consensus 532 lP~pl~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 564 (1109)
T PRK10929 532 SPLPVLWAALGYGLQNAWPYPLAVAIGDGVTAT 564 (1109)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhHhhccHHHHHH
Confidence 466666667777 44434333334444444443
No 72
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=29.93 E-value=88 Score=23.68 Aligned_cols=23 Identities=22% Similarity=0.700 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020345 130 AGMIFGYGLGFVIIMVGTTIGMV 152 (327)
Q Consensus 130 aG~lFG~~~G~li~~lg~~lGa~ 152 (327)
.|.+||...|.+++++-..+|+.
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888777777664
No 73
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=28.81 E-value=85 Score=23.78 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=21.9
Q ss_pred Hhhcccc-CChHHHHHHHHHHHHHHHHHHHHHH
Q 020345 114 ALFPVFL-IPSGPSMWLAGMIFGYGLGFVIIMV 145 (327)
Q Consensus 114 ~~~~~l~-iP~~~l~i~aG~lFG~~~G~li~~l 145 (327)
+..|.-| -|.-.+.++.|.++|...|+.++++
T Consensus 47 A~~P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 47 AIVPDKPVSPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred cccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333 3677788888899998888776653
No 74
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=28.38 E-value=1.9e+02 Score=27.72 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=39.6
Q ss_pred ccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHhhhhhhccCCCcCchHHHHHHHHHHHHHHHHHHHHH
Q 020345 200 SPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFT 279 (327)
Q Consensus 200 ~P~P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~l~~l~~~~~~~~~~s~~~~i~~iig~i~avv~~~~l~ 279 (327)
.|.+---+.+++|.+ ..++++.+-...+.+..| ... ... .++.+|.+..+|.+..++++..+.
T Consensus 113 tPllll~l~lla~~~--------~~ti~~~v~ad~~~iv~~-laa----a~~----~~tykW~~y~ig~~a~lvvl~~l~ 175 (285)
T COG5524 113 TPLLLLYLGLLAGTS--------LWTIAGVVAADIIMIVTG-LAA----ALT----HSTYKWAYYAIGAAAFLVVLAVLV 175 (285)
T ss_pred hhHHHHHHHHhcCCc--------HHHHHHHHHHHHHHHHHH-HHH----Hhh----chhhhHHHHHHHHHHHHHHHHHHH
Confidence 365556677777766 345555555555555555 111 111 146789999988887777666655
Q ss_pred HHHH
Q 020345 280 VYAK 283 (327)
Q Consensus 280 ~~~k 283 (327)
.-.+
T Consensus 176 ~~~~ 179 (285)
T COG5524 176 TGFF 179 (285)
T ss_pred hhhh
Confidence 4433
No 75
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=28.12 E-value=3.8e+02 Score=23.82 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=31.7
Q ss_pred CchhHHHHHHHhhHHHHHHHHHHHHHHhhhhhhccCCCcCchH--HHHHHHHHHHHHHHHHHHHHHH
Q 020345 217 RFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTV--EIVYNIISFIIAVLTIIAFTVY 281 (327)
Q Consensus 217 ~~~~F~~~s~lG~lP~~~l~v~~G~~l~~l~~~~~~~~~~s~~--~~i~~iig~i~avv~~~~l~~~ 281 (327)
+......++++|.+-..+..+..|...-.--.+ ++++++ +.++|....+...++...+...
T Consensus 105 ~~~~i~~g~~i~~~~r~~~h~isGvif~~~yAp----~g~~~~~YS~~yN~sy~l~~~~i~~iv~~l 167 (177)
T PF09515_consen 105 SYLNIILGTFIAVFLRYFCHFISGVIFFGSYAP----EGMNPWLYSFIYNGSYMLPELLITLIVLSL 167 (177)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-GGG------TT--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888887777777777554211111 123453 5556666655554444444333
No 76
>PRK00523 hypothetical protein; Provisional
Probab=28.01 E-value=1.9e+02 Score=22.10 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 020345 267 SFIIAVLTIIAFTVYAKRALKELER 291 (327)
Q Consensus 267 g~i~avv~~~~l~~~~kr~l~~~~~ 291 (327)
++++.++..++-.+.+||..++..+
T Consensus 11 ~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556667777766544
No 77
>COG1238 Predicted membrane protein [Function unknown]
Probab=27.61 E-value=1.3e+02 Score=26.40 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=43.7
Q ss_pred hcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 020345 198 RVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADV 249 (327)
Q Consensus 198 Rl~P~P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~l~~l~~~ 249 (327)
=+.|+|..++=...-+.+.+.+.+...+.+|...+..+--++|+.+.+..+.
T Consensus 31 t~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 31 TLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 3458888888777777779999999999999999999999999988876554
No 78
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.57 E-value=80 Score=24.62 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 020345 268 FIIAVLTIIAF 278 (327)
Q Consensus 268 ~i~avv~~~~l 278 (327)
+++++++...+
T Consensus 16 ~iiaIvvW~iv 26 (81)
T PF00558_consen 16 LIIAIVVWTIV 26 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 79
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=26.80 E-value=6.4e+02 Score=25.05 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020345 264 NIISFIIAVLTIIAFTVYAKR 284 (327)
Q Consensus 264 ~iig~i~avv~~~~l~~~~kr 284 (327)
.+++++++.+....++...|+
T Consensus 316 ~iiailig~vvtavl~~~~k~ 336 (359)
T PRK10478 316 YIAAVAVGAVVTAVCVNVLKS 336 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 445555656666666666555
No 80
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=26.48 E-value=8e+02 Score=26.07 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=2.8
Q ss_pred CCeeEe
Q 020345 23 SEYVRL 28 (327)
Q Consensus 23 ~~~~~~ 28 (327)
+.||.|
T Consensus 85 ~h~vvl 90 (710)
T TIGR03796 85 NHFVVV 90 (710)
T ss_pred CcEEEE
Confidence 445444
No 81
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=25.96 E-value=5e+02 Score=23.56 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020345 139 GFVIIMVGTTIGMVLPYWVGLLFRDRIHQWLKRW 172 (327)
Q Consensus 139 G~li~~lg~~lGa~i~f~igR~~r~~i~~~l~~~ 172 (327)
+.+-.++...+.-.++.++.|+.+..+.|.+.+.
T Consensus 93 ~~lp~~l~~~~al~~sl~~~~~~~~~la~ilp~~ 126 (202)
T PF07290_consen 93 GPLPAWLAAPVALFLSLFFTRYLGRPLARILPKD 126 (202)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 3344445555555667777787777777777654
No 82
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=25.92 E-value=7.5e+02 Score=25.52 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=14.4
Q ss_pred Hhccc-chhhHHHHHHHhcCCC
Q 020345 197 FRVSP-FPYTIFNYAIVVTSMR 217 (327)
Q Consensus 197 ~Rl~P-~P~~lvny~aG~t~i~ 217 (327)
.|++| .-.++-|+.++.+++|
T Consensus 105 ~rlla~L~~Dvr~ISf~~s~lp 126 (546)
T COG4615 105 ARLLAGLTSDVRNISFAFSRLP 126 (546)
T ss_pred cchhhhhcccccceeehHhhhH
Confidence 46677 5677777777766654
No 83
>COG4720 Predicted membrane protein [Function unknown]
Probab=25.87 E-value=2e+02 Score=25.69 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhccccCCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 104 VLAIVLIASLALFPVFLIPS--------GPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYW 156 (327)
Q Consensus 104 ~~~~~~i~~~~~~~~l~iP~--------~~l~i~aG~lFG~~~G~li~~lg~~lGa~i~f~ 156 (327)
..++++++...+. +|.|. .....++.++||+..|.+...+|..+=+.++++
T Consensus 15 ~aALvvvlg~~i~--IPtp~~~~~i~L~da~i~las~lfGs~~G~lvg~iG~al~Dll~gy 73 (177)
T COG4720 15 GAALVVVLGRLIR--IPTPIPNGFLTLGDAGIALASFLFGSRAGALVGGLGHALKDLLSGY 73 (177)
T ss_pred HHHHHHHHHheeE--ecCCCCCCeeeHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHhcCC
Confidence 3455555544333 34554 455677788999999999999998887777643
No 84
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=25.84 E-value=79 Score=26.63 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 256 MTTVEIVYNIISFIIAVLTIIAFTVY 281 (327)
Q Consensus 256 ~s~~~~i~~iig~i~avv~~~~l~~~ 281 (327)
.+||.+.++..++++.++.++++.+-
T Consensus 32 ~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 32 ATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 36787777666666655555555443
No 85
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=25.57 E-value=6e+02 Score=24.28 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=45.9
Q ss_pred hHHHHHHHhcccchhhHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHHHHHHhhhhhhcc-CCCcCchH--HHHHHHH
Q 020345 190 QFRMVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKY-GNYHMTTV--EIVYNII 266 (327)
Q Consensus 190 g~~~v~l~Rl~P~P~~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~G~~l~~l~~~~~-~~~~~s~~--~~i~~ii 266 (327)
++..+++.|++|.+-...||+...+-.+.+ +.-..|+.+.+.......++-..... .=..++|. .|..+++
T Consensus 128 ~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~------v~~l~p~~~~~~~~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~ 201 (275)
T KOG3140|consen 128 VFKGVLLVCLLSTLGASLCYLLSKLFGRPL------VLKLFPDKIAFLQQDVELNRNSLLNYMLFLRLSPFLPNWVINIV 201 (275)
T ss_pred cceEEeeeeeccchhHHHHHHHHHHHhHHH------HHHHhHHHHHHHHHHHHhcccchhhhhhhhhhccCCHHHHHHHH
Confidence 467889999999766888887654433211 11234555555555544332110000 00123332 4777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020345 267 SFIIAVLTIIAFTVYAK 283 (327)
Q Consensus 267 g~i~avv~~~~l~~~~k 283 (327)
+-++.+-+.+.+.-..+
T Consensus 202 spvl~Vp~~~f~~~~~~ 218 (275)
T KOG3140|consen 202 SPVLGVPLRIFFIGTFK 218 (275)
T ss_pred HHhhccchHHHHHHHHH
Confidence 76666665555444333
No 86
>PF14163 SieB: Superinfection exclusion protein B
Probab=24.88 E-value=2.8e+02 Score=23.42 Aligned_cols=27 Identities=15% Similarity=0.475 Sum_probs=16.9
Q ss_pred ccCChHHHHHHHH----HHHHHHHHHHHHHH
Q 020345 119 FLIPSGPSMWLAG----MIFGYGLGFVIIMV 145 (327)
Q Consensus 119 l~iP~~~l~i~aG----~lFG~~~G~li~~l 145 (327)
+++|.+.+..+.= ..+++|.|.+....
T Consensus 13 lf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s 43 (151)
T PF14163_consen 13 LFLPESLLEWLNLDKFEIKYQPWIGLIFLFS 43 (151)
T ss_pred HHCCHHHHHHhCcchHHHhcchHHHHHHHHH
Confidence 3678877754433 35778888765543
No 87
>KOG4694 consensus Predicted membrane protein [Function unknown]
Probab=24.80 E-value=3.7e+02 Score=23.58 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=31.0
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHhhhhhhccCCCcCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 020345 218 FWPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNII-SFIIAVLTIIAFTVYAKRALKELERGEANG 296 (327)
Q Consensus 218 ~~~F~~~s~lG~lP~~~l~v~~G~~l~~l~~~~~~~~~~s~~~~i~~ii-g~i~avv~~~~l~~~~kr~l~~~~~~~~~~ 296 (327)
.+-|+..|.+=.+|.+....+-|.. .+ -|.+++.+++ .+.++-++....-...++.-+++..++-.+
T Consensus 86 l~gfl~~t~~iqlPl~vFL~~n~~~-~n-----------LpLe~~~~~vftlf~~e~iv~~~~~~~~k~~~k~~~e~l~d 153 (174)
T KOG4694|consen 86 LWGFLTVTPCIQLPLMVFLRLNAAG-RN-----------LPLEIITNAVFTLFVLEVIVSLVHFVICKPGCKLPLEQLPD 153 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc-cc-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHccc
Confidence 3456666666666665544332221 11 2455554433 233333333333444555666665544333
No 88
>PRK14414 membrane protein; Provisional
Probab=24.09 E-value=4.1e+02 Score=24.38 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHH-HHHHHHHhhcchHHHHHHHHHHcC--------CchhhHHHHHHHhcccchhh--HHH
Q 020345 141 VIIMVGTTIGMV-LPYWVGLLF-RDRIHQWLKRWPQQAAMLRLAAEG--------SWLHQFRMVALFRVSPFPYT--IFN 208 (327)
Q Consensus 141 li~~lg~~lGa~-i~f~igR~~-r~~i~~~l~~~~~~~~l~~~~~~~--------~~~~g~~~v~l~Rl~P~P~~--lvn 208 (327)
+...+|..+|++ .+|+++|.+ +.-+++.-..++.....-|..... .-.+|+..+.+.+..+.+.. ...
T Consensus 9 l~~i~~YLlGSIp~g~ii~k~~~g~DiR~~GSGN~GaTNv~R~~G~~~gilvll~D~lKG~l~v~la~~~~~~~~~~~~~ 88 (210)
T PRK14414 9 IALIAAYFIGSTPAPYLAGRIFKGIDIRTVGSKNMGSMNVFYNVGFWPGILVLAVDIGKGALAMAVANWLGEGLGIQMLC 88 (210)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCccccCCCCchHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 344566777776 668899875 444555444444322222211100 00136778888877764222 233
Q ss_pred HHHHhcCCCchhHH
Q 020345 209 YAIVVTSMRFWPYL 222 (327)
Q Consensus 209 y~aG~t~i~~~~F~ 222 (327)
-++.+.+=.|..|+
T Consensus 89 glaavlGH~fpifl 102 (210)
T PRK14414 89 ALMAIAGHNYPVWL 102 (210)
T ss_pred HHHHHHccCChHHh
Confidence 34444454555555
No 89
>COG2261 Predicted membrane protein [Function unknown]
Probab=23.96 E-value=2e+02 Score=22.46 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 127 MWLAGMIFGYG-----LGFVIIMVGTTIGMVLPYWVGLLFR 162 (327)
Q Consensus 127 ~i~aG~lFG~~-----~G~li~~lg~~lGa~i~f~igR~~r 162 (327)
.+.+|++|+.+ -+...+.+.+++|+++.-++.|.++
T Consensus 40 A~vg~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v~ 80 (82)
T COG2261 40 AFVGGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLVR 80 (82)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666676665 3456788899999999988887654
No 90
>COG2891 MreD Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.10 E-value=5.2e+02 Score=22.75 Aligned_cols=35 Identities=3% Similarity=0.099 Sum_probs=27.6
Q ss_pred hHHHHHHHhcCCCchhHHHHHHHhhHHHHHHHHHH
Q 020345 205 TIFNYAIVVTSMRFWPYLCGSVAGMVPEAFIYIYS 239 (327)
Q Consensus 205 ~lvny~aG~t~i~~~~F~~~s~lG~lP~~~l~v~~ 239 (327)
..+.+..|-+.+++..|....++..+-|..+++.+
T Consensus 119 ~~l~~l~g~~~~~~~~f~~~~ll~tlL~~~~f~ll 153 (167)
T COG2891 119 FLLELLLGNTIFTWSQFVLSRLLPTLLWPWVFALL 153 (167)
T ss_pred HHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888899999888887777766553
No 91
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=23.06 E-value=4.6e+02 Score=23.27 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 020345 153 LPYWVGLLFRDRIHQWLK 170 (327)
Q Consensus 153 i~f~igR~~r~~i~~~l~ 170 (327)
=+++++|..+..+..++.
T Consensus 118 d~~~l~r~vkk~v~~kFp 135 (170)
T PF11241_consen 118 DGVILGRRVKKRVAEKFP 135 (170)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 356788887666655444
No 92
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=23.03 E-value=3.4e+02 Score=21.67 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=8.0
Q ss_pred hhchHHHHHHHHHh
Q 020345 86 PIVLFPLMQWEATA 99 (327)
Q Consensus 86 ~~~~~~l~~wi~~~ 99 (327)
++.-.++.+|+.++
T Consensus 5 P~~W~~ll~wl~~~ 18 (100)
T PF05106_consen 5 PDFWAQLLAWLQSH 18 (100)
T ss_pred ccHHHHHHHHHHHH
Confidence 33355667777654
No 93
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=23.02 E-value=5.2e+02 Score=22.70 Aligned_cols=80 Identities=9% Similarity=0.098 Sum_probs=42.2
Q ss_pred HHHHHHhcccchhhHHHHHHHhcC--CCchhHHHHHHHhhHHHHHHH-HHHHHHHhhhhhhccCCCcCchHHHHHHHHHH
Q 020345 192 RMVALFRVSPFPYTIFNYAIVVTS--MRFWPYLCGSVAGMVPEAFIY-IYSGRLIRTLADVKYGNYHMTTVEIVYNIISF 268 (327)
Q Consensus 192 ~~v~l~Rl~P~P~~lvny~aG~t~--i~~~~F~~~s~lG~lP~~~l~-v~~G~~l~~l~~~~~~~~~~s~~~~i~~iig~ 268 (327)
...++.-++|-|..+.....|+.+ -+-..+.++..+|...+..+. ..++..+.. .|. .+ .
T Consensus 11 ~~~~~~~~sPGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~-----------~p~--~~----~ 73 (205)
T PRK10520 11 LTSIILSLSPGSGAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQ-----------SLL--AF----E 73 (205)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHH--HH----H
Confidence 456677788999887777777654 333444445555544443322 122222221 121 11 3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020345 269 IIAVLTIIAFTVYAKRALKE 288 (327)
Q Consensus 269 i~avv~~~~l~~~~kr~l~~ 288 (327)
++-++...++.+.+-|.++.
T Consensus 74 ~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 74 VLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 44555566667777666654
No 94
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.75 E-value=1.3e+02 Score=25.50 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020345 139 GFVIIMVGTTIGMVLPYWVGLLF 161 (327)
Q Consensus 139 G~li~~lg~~lGa~i~f~igR~~ 161 (327)
-+.++.+|-++|-+|+|+|.|..
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677888899999999999976
No 95
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=22.47 E-value=4.9e+02 Score=23.46 Aligned_cols=82 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCc-hhHHHHHHHhhHHHHHHHHHHHHHHhhhhhhccCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 207 FNYAIVVTSMRF-WPYLCGSVAGMVPEAFIYIYSGRLIRTLADVKYGNYHMTTVEIVYNIISFIIAVLTIIAFTVYAKRA 285 (327)
Q Consensus 207 vny~aG~t~i~~-~~F~~~s~lG~lP~~~l~v~~G~~l~~l~~~~~~~~~~s~~~~i~~iig~i~avv~~~~l~~~~kr~ 285 (327)
+....|+.+++. ....+...+-..-.+.+-.++|..+.+.-.....+ .+..+++...-.+..++.
T Consensus 17 vgi~~G~~~~~~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~--------------~ig~~iLi~iG~~mi~~~ 82 (206)
T TIGR02840 17 VGIAYGLRKIKIPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTE--------------ILGAFILIAIGIWIIYNA 82 (206)
T ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHH--------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhccccCcCCcCC
Q 020345 286 LKELERGEANGEETSTS 302 (327)
Q Consensus 286 l~~~~~~~~~~~~~~~~ 302 (327)
+++-++++++++++...
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (206)
T TIGR02840 83 FRPKKEVKDRSSEPDST 99 (206)
T ss_pred Hhhhcccccccccchhh
No 96
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=22.36 E-value=4.6e+02 Score=25.15 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020345 269 IIAVLTIIAFTVYAKRALKEL 289 (327)
Q Consensus 269 i~avv~~~~l~~~~kr~l~~~ 289 (327)
+..++.+++-.+-.+|.+|++
T Consensus 286 ~g~~lg~lgs~~s~~r~Lr~~ 306 (309)
T TIGR00439 286 FCIALGVVGAWLATTQHLLCF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334445555556678888877
No 97
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=22.10 E-value=3.4e+02 Score=20.20 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 141 VIIMVGTTIGMVLPYWVGLLFRDRIHQW 168 (327)
Q Consensus 141 li~~lg~~lGa~i~f~igR~~r~~i~~~ 168 (327)
....++..++..++|++-|..|+.+...
T Consensus 34 ~~~l~A~vis~~lS~~ll~~~R~~~~~~ 61 (69)
T PF14012_consen 34 VAALLALVISMPLSYVLLRRLRDRASAD 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888777766543
No 98
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=22.03 E-value=1.7e+02 Score=22.86 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 264 NIISFIIAVLTIIAFTVYAKRALKELE 290 (327)
Q Consensus 264 ~iig~i~avv~~~~l~~~~kr~l~~~~ 290 (327)
.++++++++++.++++...-+..+|.+
T Consensus 8 ~iialiv~~iiaIvvW~iv~ieYrk~~ 34 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTIVYIEYRKIK 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665555555444444433
No 99
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=21.80 E-value=2.5e+02 Score=25.52 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 020345 272 VLTIIAFTVYAKRALKELERG 292 (327)
Q Consensus 272 vv~~~~l~~~~kr~l~~~~~~ 292 (327)
|+++=+--||++|.-++..++
T Consensus 147 VLvLQaG~~YAe~~~~~~~~~ 167 (196)
T PF08229_consen 147 VLVLQAGQWYAERKDAKELEE 167 (196)
T ss_pred HHHHHhhHHHHhhhhHHHHHH
Confidence 333334457887766655443
No 100
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.77 E-value=7.5e+02 Score=28.48 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=32.0
Q ss_pred HHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHH
Q 020345 109 LIASLALFPVFLIPSGPSMWLAGMIFGYGLGFVI-IMVGTTIGMVLPYWVGLLF--RDRI 165 (327)
Q Consensus 109 ~i~~~~~~~~l~iP~~~l~i~aG~lFG~~~G~li-~~lg~~lGa~i~f~igR~~--r~~i 165 (327)
++++++.+..+.++.+.+.+++|. .|...|+.. -+++.++|+++.. +-|-+ ||++
T Consensus 885 ~ig~l~~L~~lGI~~t~l~al~ga-lGVgIGfAlQ~ilsNfiSGIiIL-~erPfrVGD~I 942 (1109)
T PRK10929 885 LIGGLVGFSMIGIEWSKLQWLVAA-LGVGLGFGLQEIFANFISGLIIL-FEKPIRIGDTV 942 (1109)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCEE
Confidence 334455566678887777655554 466666654 4666666665543 33433 5654
No 101
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=21.41 E-value=8.8e+02 Score=24.76 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHh
Q 020345 279 TVYAKRALKELER 291 (327)
Q Consensus 279 ~~~~kr~l~~~~~ 291 (327)
....++..++..+
T Consensus 171 ~~~~~~~~~~~~~ 183 (571)
T TIGR02203 171 MRRVSKRLRRISK 183 (571)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 102
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=21.40 E-value=3.8e+02 Score=20.45 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 020345 272 VLTIIAFTVYA 282 (327)
Q Consensus 272 vv~~~~l~~~~ 282 (327)
++......++.
T Consensus 102 ~~~~~i~~~~~ 112 (121)
T PF02687_consen 102 LLISIIASLIP 112 (121)
T ss_pred HHHHHHHHHHH
Confidence 33333334443
No 103
>PF15102 TMEM154: TMEM154 protein family
Probab=21.13 E-value=25 Score=30.38 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=6.7
Q ss_pred CCCCcccccccCCC
Q 020345 302 STGSGFEMNKLPLE 315 (327)
Q Consensus 302 ~~~~~~~~~~~~~~ 315 (327)
.+.-+.|-.|+|.=
T Consensus 102 t~e~~~Env~~PiF 115 (146)
T PF15102_consen 102 TYELGSENVKVPIF 115 (146)
T ss_pred ccccCccccccccc
Confidence 44444455555543
No 104
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=21.13 E-value=2.4e+02 Score=23.84 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=4.4
Q ss_pred HHHHHHHhc
Q 020345 284 RALKELERG 292 (327)
Q Consensus 284 r~l~~~~~~ 292 (327)
|.+++++++
T Consensus 90 k~~~k~~~~ 98 (127)
T TIGR00220 90 KAINKLRRK 98 (127)
T ss_pred HHHHHHHHh
Confidence 345555443
No 105
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=21.01 E-value=9.1e+02 Score=24.73 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=14.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 020345 265 IISFIIAVL-TIIAFTVYAKRALKELER 291 (327)
Q Consensus 265 iig~i~avv-~~~~l~~~~kr~l~~~~~ 291 (327)
..|.++++. ..+...++. |..+|..+
T Consensus 177 l~g~ivaip~~~iag~~~~-~~~~r~~~ 203 (442)
T COG2610 177 LYGLIVAIPTVIIAGPLFA-KLLGRKIK 203 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhCcCC
Confidence 345666666 555556666 55554443
No 106
>COG3162 Predicted membrane protein [Function unknown]
Probab=20.88 E-value=4.6e+02 Score=21.28 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 266 ISFIIAVLTIIAFTVYAKRALKELE 290 (327)
Q Consensus 266 ig~i~avv~~~~l~~~~kr~l~~~~ 290 (327)
+|+..-+..++.-.+|.+|+-.+.+
T Consensus 66 ~gvg~fv~tfVlt~IYv~rAn~~fD 90 (102)
T COG3162 66 FGVGVFVMTFVLTGIYVRRANGEFD 90 (102)
T ss_pred HHHHHHHHHHHHHHHHhhHhhccch
Confidence 3455555566666777777654433
No 107
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ. Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.
Probab=20.58 E-value=6e+02 Score=22.50 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020345 127 MWLAGMIFGYGLGFVIIM 144 (327)
Q Consensus 127 ~i~aG~lFG~~~G~li~~ 144 (327)
.+++|+.+|+..|.+...
T Consensus 39 iil~a~~~Gp~~G~~~G~ 56 (183)
T TIGR02357 39 IVLISFRRGLKAGLVAGL 56 (183)
T ss_pred HHHHHHHHccHHHHHHHH
Confidence 556666666666655444
No 108
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.44 E-value=2e+02 Score=19.53 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 020345 264 NIISFIIAVLTIIAFTVYAKRALKELERGEANGE 297 (327)
Q Consensus 264 ~iig~i~avv~~~~l~~~~kr~l~~~~~~~~~~~ 297 (327)
...+..+++++++++.+.+.+.-++..++-+.+|
T Consensus 7 VW~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~~~ 40 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVWSLRRRRRLRKELKRLE 40 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777778888777777777666554
No 109
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=20.39 E-value=1.5e+02 Score=28.06 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 020345 146 GTTIGMVLPYWVGLLF 161 (327)
Q Consensus 146 g~~lGa~i~f~igR~~ 161 (327)
|..+|+++++++|..+
T Consensus 17 ~g~~Ga~~G~~~Gh~~ 32 (267)
T PRK09430 17 GGFFGALLGLLIGHMF 32 (267)
T ss_pred hhHHHHHHHHHHHhHH
Confidence 5566666666666655
No 110
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=20.28 E-value=5e+02 Score=21.48 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=6.7
Q ss_pred HHHHHHhhHHH
Q 020345 222 LCGSVAGMVPE 232 (327)
Q Consensus 222 ~~~s~lG~lP~ 232 (327)
+++|++|++..
T Consensus 70 LlGTv~Gmi~~ 80 (139)
T PF01618_consen 70 LLGTVIGMIEA 80 (139)
T ss_pred HHHHHHHHHHH
Confidence 35777776543
No 111
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.23 E-value=2.4e+02 Score=25.74 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 020345 260 EIVYNIISFIIAVL 273 (327)
Q Consensus 260 ~~i~~iig~i~avv 273 (327)
.+++.+.++++++.
T Consensus 47 ~lvilV~avi~gl~ 60 (201)
T COG1422 47 HLVILVAAVITGLY 60 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444434333333
Done!