Query 020345
Match_columns 327
No_of_seqs 342 out of 1793
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pi7_A VPU protein, U ORF prot 56.7 28 0.00096 22.0 5.1 29 264-292 7-35 (36)
2 2k9j_B Integrin beta-3; transm 47.8 39 0.0013 22.0 5.0 29 265-293 13-41 (43)
3 2knc_B Integrin beta-3; transm 44.3 26 0.00089 25.9 4.1 13 283-295 41-53 (79)
4 3p5n_A RIBU, riboflavin uptake 38.5 45 0.0015 28.3 5.4 50 104-153 16-77 (189)
5 2k1k_A Ephrin type-A receptor 33.1 79 0.0027 20.0 4.5 29 254-282 6-34 (38)
6 4ezc_A UREA transporter 1; mem 32.4 1.2E+02 0.0041 29.0 7.7 68 89-158 37-106 (384)
7 2knc_B Integrin beta-3; transm 26.7 71 0.0024 23.5 4.0 26 266-291 15-40 (79)
8 2jwa_A Receptor tyrosine-prote 26.4 1.1E+02 0.0039 20.0 4.5 24 261-284 14-37 (44)
9 4dve_A Biotin transporter BIOY 24.1 3.4E+02 0.012 23.2 12.0 16 125-140 53-68 (198)
10 3iyz_A Aquaporin-4; water tran 19.8 2.5E+02 0.0086 26.3 7.3 143 1-157 1-153 (340)
No 1
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=56.71 E-value=28 Score=21.99 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020345 264 NIISFIIAVLTIIAFTVYAKRALKELERG 292 (327)
Q Consensus 264 ~iig~i~avv~~~~l~~~~kr~l~~~~~~ 292 (327)
.+++++++.++-+.++...-+..+|..++
T Consensus 7 ~ivalivalIiaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555544555555543
No 2
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=47.83 E-value=39 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020345 265 IISFIIAVLTIIAFTVYAKRALKELERGE 293 (327)
Q Consensus 265 iig~i~avv~~~~l~~~~kr~l~~~~~~~ 293 (327)
+.|.+.+++++..+.....|.+..+++++
T Consensus 13 v~gvi~~ivliGl~lLliwk~~~~i~Drr 41 (43)
T 2k9j_B 13 LLSVMGAILLIGLAALLIWKLLITIHDRK 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheehhh
Confidence 34556666666666677777777776654
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=44.27 E-value=26 Score=25.92 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=6.2
Q ss_pred HHHHHHHHhcccc
Q 020345 283 KRALKELERGEAN 295 (327)
Q Consensus 283 kr~l~~~~~~~~~ 295 (327)
||..+|.++|+++
T Consensus 41 rrE~~kFEkE~~~ 53 (79)
T 2knc_B 41 RKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4455555544443
No 4
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=38.47 E-value=45 Score=28.30 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 104 VLAIVLIASLALFPVFLIP------------SGPSMWLAGMIFGYGLGFVIIMVGTTIGMVL 153 (327)
Q Consensus 104 ~~~~~~i~~~~~~~~l~iP------------~~~l~i~aG~lFG~~~G~li~~lg~~lGa~i 153 (327)
....++.++.++...+.+| ++...+++|++||++.|++...+...++..+
T Consensus 16 ~~~all~Al~~vl~~~~ipip~~~~~~ki~l~~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 16 ITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp HHHHHHHHHHHHTTTCCCCCTTSCSSCCCCGGGHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcceecHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=33.14 E-value=79 Score=19.99 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=17.4
Q ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 254 YHMTTVEIVYNIISFIIAVLTIIAFTVYA 282 (327)
Q Consensus 254 ~~~s~~~~i~~iig~i~avv~~~~l~~~~ 282 (327)
..++...+.-.++|.++.+++++++.++.
T Consensus 6 ~~ls~GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeeeehHHHHHHHHHHHHHHHH
Confidence 34566666666667666666666665543
No 6
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=32.39 E-value=1.2e+02 Score=29.02 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcChhHHHHHHHHHHHhhccccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 89 LFPLMQWEATAFGRPVLAIVLIASLALFPVFLIPS--GPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYWVG 158 (327)
Q Consensus 89 ~~~l~~wi~~~~G~p~~~~~~i~~~~~~~~l~iP~--~~l~i~aG~lFG~~~G~li~~lg~~lGa~i~f~ig 158 (327)
...+.+|++++.. ..-++-..+--+-++++.+. +-+.++.|..++-++-.+.+.+|+.+|...+++++
T Consensus 37 ~~~~~~~~~~~~~--~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~llg 106 (384)
T 4ezc_A 37 MKEFANWLKDKPQ--ALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLS 106 (384)
T ss_dssp CHHHHHHHHTSCH--HHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcCCc--HHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 5678899987632 22222222333444555554 33567777777766666777777777776666555
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.69 E-value=71 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020345 266 ISFIIAVLTIIAFTVYAKRALKELER 291 (327)
Q Consensus 266 ig~i~avv~~~~l~~~~kr~l~~~~~ 291 (327)
.|++++++++.++.+...|.+..+++
T Consensus 15 ~gvi~gilliGllllliwk~~~~i~D 40 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIHD 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555666665555543
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=26.37 E-value=1.1e+02 Score=20.02 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020345 261 IVYNIISFIIAVLTIIAFTVYAKR 284 (327)
Q Consensus 261 ~i~~iig~i~avv~~~~l~~~~kr 284 (327)
++-.++|+++.+++.+.+.+|.||
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheeh
Confidence 444556655555555555556554
No 9
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.15 E-value=3.4e+02 Score=23.24 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 020345 125 PSMWLAGMIFGYGLGF 140 (327)
Q Consensus 125 ~l~i~aG~lFG~~~G~ 140 (327)
...+++|.++|+..|+
T Consensus 53 l~V~LaG~~LG~r~G~ 68 (198)
T 4dve_A 53 MGIMMAGGLLGPKYGT 68 (198)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChhHHH
Confidence 3466677777766665
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=19.83 E-value=2.5e+02 Score=26.29 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCchhhhhccCCC--CccccccCCCeeEeeccCCCCCCCCCCCCCCcccchhhHHH--HHHHHHHHHHHHHHHHHHHHh
Q 020345 1 MPNSSEELGLHGEN--SVQHVKEDSEYVRLVISDDPRPAEGDTLQPEPETRTKSLIR--WIRTLALCILLVIIILIFLKW 76 (327)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--W~k~l~l~~ll~~~~~~~~~~ 76 (327)
||.-|..--++|.. +++++-+++|| .+++++.+....-.+.+....+.++| ..-++-..+++.+.+.....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~ 76 (340)
T 3iyz_A 1 MPRGSHHHHHHGMASMTGGQQMGRDLY----DDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINW 76 (340)
T ss_pred CCCCcccccccchhhcChhhhcCCCCC----CCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ccccccccchhchHHHHHHHHHhcChhHHHHHHHHHHHhhcc---ccCChHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 020345 77 GVPFLFEKVPIVLFPLMQWEATAFGRPVLAIVLIASLALFPV---FLIPSGPSMWLAGMIFGYGLGFVII---MVGTTIG 150 (327)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~wi~~~~G~p~~~~~~i~~~~~~~~---l~iP~~~l~i~aG~lFG~~~G~li~---~lg~~lG 150 (327)
.... -..-..|+.-.++ |+..+++.+|++.++ -+=|...+.....--+.......+. ++|+++|
T Consensus 77 ~~~~--------~~~~~g~l~Iala--~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~G 146 (340)
T 3iyz_A 77 GGSE--------NPLPVDMVLISLC--FGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIG 146 (340)
T ss_pred ccCC--------CCCCcchHHHHHH--HHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 020345 151 MVLPYWV 157 (327)
Q Consensus 151 a~i~f~i 157 (327)
+.+.|.+
T Consensus 147 A~lv~~~ 153 (340)
T 3iyz_A 147 AGILYLV 153 (340)
T ss_pred HHHHHHh
Done!