Query 020345
Match_columns 327
No_of_seqs 342 out of 1793
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 15:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020345.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020345hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 25.4 25 0.0018 25.8 3.2 16 281-296 80-95 (109)
2 d1q90m_ f.23.25.1 (M:) PetM su 14.2 1.1E+02 0.0078 17.1 4.2 25 135-159 3-28 (34)
3 d2jm6b1 f.1.4.1 (B:147-308) EA 10.5 1.6E+02 0.012 22.1 5.0 47 55-101 95-146 (162)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 9.0 5.3E+02 0.038 21.9 10.0 12 144-155 346-357 (444)
5 d1k8ke_ a.148.1.1 (E:) Arp2/3 8.6 48 0.0035 26.2 0.9 20 274-293 66-85 (174)
6 d2vv5a3 f.34.1.1 (A:27-112) Me 8.5 1.4E+02 0.01 19.7 3.4 15 277-291 17-31 (86)
7 d1q90g_ f.23.26.1 (G:) PetG su 5.6 2.5E+02 0.018 15.2 3.9 18 221-238 5-22 (30)
8 d1ppjd2 f.23.11.1 (D:196-241) 5.3 3.3E+02 0.024 16.2 4.0 20 274-293 20-39 (46)
9 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 5.3 4.6E+02 0.033 19.5 5.3 47 55-101 100-151 (164)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 5.1 3E+02 0.022 18.8 4.0 34 263-296 6-39 (158)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.35 E-value=25 Score=25.76 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhccccC
Q 020345 281 YAKRALKELERGEANG 296 (327)
Q Consensus 281 ~~kr~l~~~~~~~~~~ 296 (327)
...+.+|+++++++++
T Consensus 80 ~vvk~~n~~~~k~~~~ 95 (109)
T d2oara1 80 LVVLPYNTLRKKGEVE 95 (109)
T ss_dssp HTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhcCCCC
Confidence 3456778887665544
No 2
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.24 E-value=1.1e+02 Score=17.10 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH
Q 020345 135 GYGLGFVIIMVGTTI-GMVLPYWVGL 159 (327)
Q Consensus 135 G~~~G~li~~lg~~l-Ga~i~f~igR 159 (327)
|+.-|..+.++|.++ |-.++|.+-|
T Consensus 3 ~fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 3 EFIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecchhHHHHHHHHHHHHHHHhhee
Confidence 344566666666543 5556665544
No 3
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.53 E-value=1.6e+02 Score=22.10 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc----ccccchhch-HHHHHHHHHhcC
Q 020345 55 RWIRTLALCILLVIIILIFLKWGVPF----LFEKVPIVL-FPLMQWEATAFG 101 (327)
Q Consensus 55 ~W~k~l~l~~ll~~~~~~~~~~~~~~----~~~~~~~~~-~~l~~wi~~~~G 101 (327)
+|.|++.+..+...++.=...-+.+- ..+.+.+++ +.+.+|+.++-|
T Consensus 95 NWGRIval~~F~~~la~~~~~~~~~~~v~~i~~~~~~fl~~~l~~WI~~~GG 146 (162)
T d2jm6b1 95 NWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRG 146 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhHHHHHHHCCC
Confidence 59999877777766655443323221 123333333 346888888755
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=8.99 E-value=5.3e+02 Score=21.95 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 020345 144 MVGTTIGMVLPY 155 (327)
Q Consensus 144 ~lg~~lGa~i~f 155 (327)
.+|+.+|..++.
T Consensus 346 ~iGa~~G~~~~~ 357 (444)
T d1otsa_ 346 ALGTVLGTAFGM 357 (444)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 5
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.61 E-value=48 Score=26.19 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 020345 274 TIIAFTVYAKRALKELERGE 293 (327)
Q Consensus 274 ~~~~l~~~~kr~l~~~~~~~ 293 (327)
+++++++|....++++++..
T Consensus 66 ~LIYltlyiseCL~kl~~~~ 85 (174)
T d1k8ke_ 66 TLIYITLYISECLKKLQKCN 85 (174)
T ss_dssp HHHHHHHHHHHHHHHHTSCC
T ss_pred eeeehHHHHHHHHHHHhcCc
Confidence 35678889889999998753
No 6
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=8.54 E-value=1.4e+02 Score=19.67 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 020345 277 AFTVYAKRALKELER 291 (327)
Q Consensus 277 ~l~~~~kr~l~~~~~ 291 (327)
.+..+.+|..+|..+
T Consensus 17 ~i~~~i~~~~~~~~~ 31 (86)
T d2vv5a3 17 IIARMISNAVNRLMI 31 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444555555443
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.65 E-value=2.5e+02 Score=15.18 Aligned_cols=18 Identities=39% Similarity=0.846 Sum_probs=11.5
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 020345 221 YLCGSVAGMVPEAFIYIY 238 (327)
Q Consensus 221 F~~~s~lG~lP~~~l~v~ 238 (327)
.+.+..+|.+|.+..-.+
T Consensus 5 ll~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHHHHH
Confidence 455667788887764433
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.29 E-value=3.3e+02 Score=16.19 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 020345 274 TIIAFTVYAKRALKELERGE 293 (327)
Q Consensus 274 ~~~~l~~~~kr~l~~~~~~~ 293 (327)
+++...++-|+.+..++.++
T Consensus 20 l~~l~yy~KR~~Ws~lKsrK 39 (46)
T d1ppjd2 20 LLPLVYAMKRHKWSVLKSRK 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHhhhhcccce
Confidence 33333444455666666543
No 9
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.26 E-value=4.6e+02 Score=19.47 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc----ccccchhc-hHHHHHHHHHhcC
Q 020345 55 RWIRTLALCILLVIIILIFLKWGVPF----LFEKVPIV-LFPLMQWEATAFG 101 (327)
Q Consensus 55 ~W~k~l~l~~ll~~~~~~~~~~~~~~----~~~~~~~~-~~~l~~wi~~~~G 101 (327)
.|.|++.+.++.+.++.=...-+.+- ..+.+.++ .+.+..|+.++-|
T Consensus 100 nWGRIVal~~F~~~la~~~~~~~~~~~v~~i~~~~~~~l~~~l~~WI~~~GG 151 (164)
T d1g5ma_ 100 NWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGG 151 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 49999877777666655444333231 12222222 2356788888756
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.14 E-value=3e+02 Score=18.78 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 020345 263 YNIISFIIAVLTIIAFTVYAKRALKELERGEANG 296 (327)
Q Consensus 263 ~~iig~i~avv~~~~l~~~~kr~l~~~~~~~~~~ 296 (327)
++++-.|+++++.+++.-|.+..-+....+...+
T Consensus 6 LlVViaIIgILaaia~P~~~~~~~~a~~~~~~~~ 39 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYTARAQVSEAILL 39 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!