Your job contains 1 sequence.
>020346
MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE
NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV
DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR
SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT
PGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYY
FQLLDEIRIREEFQLRTFGTKREGDVR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020346
(327 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2197618 - symbol:emb1688 "embryo defective 168... 1296 3.4e-132 1
UNIPROTKB|A8IGD6 - symbol:CHLREDRAFT_49443 "Predicted pro... 379 1.1e-60 2
UNIPROTKB|Q81WH7 - symbol:rsgA "Putative ribosome biogene... 246 5.2e-41 2
TIGR_CMR|BA_3999 - symbol:BA_3999 "conserved hypothetical... 246 5.2e-41 2
UNIPROTKB|Q3AC25 - symbol:rsgA "Putative ribosome biogene... 215 4.4e-37 2
TIGR_CMR|CHY_1477 - symbol:CHY_1477 "GTP-binding protein"... 215 4.4e-37 2
UNIPROTKB|Q9X242 - symbol:rsgA "Putative ribosome biogene... 223 2.6e-32 2
UNIPROTKB|Q71YJ7 - symbol:rsgA1 "Putative ribosome biogen... 199 5.8e-30 2
TIGR_CMR|VC_0340 - symbol:VC_0340 "ribosome small subunit... 210 1.8e-24 2
UNIPROTKB|Q8EJ79 - symbol:rsgA "Putative ribosome biogene... 181 3.9e-23 2
TIGR_CMR|SO_0591 - symbol:SO_0591 "conserved hypothetical... 181 3.9e-23 2
TIGR_CMR|CPS_4380 - symbol:CPS_4380 "ribosome small subun... 188 3.5e-22 2
UNIPROTKB|Q60BE0 - symbol:rsgA "Putative ribosome biogene... 168 6.4e-21 2
UNIPROTKB|P39286 - symbol:rsgA "ribosome small subunit-de... 175 1.8e-19 2
UNIPROTKB|Q74A60 - symbol:rsgA "Putative ribosome biogene... 159 3.3e-17 2
TIGR_CMR|GSU_2530 - symbol:GSU_2530 "GTPase YjeQ" species... 159 3.3e-17 2
UNIPROTKB|Q81RN4 - symbol:rsgA "Putative ribosome biogene... 140 4.8e-14 2
TIGR_CMR|BA_2008 - symbol:BA_2008 "conserved hypothetical... 140 4.8e-14 2
UNIPROTKB|Q71ZZ0 - symbol:rsgA2 "Putative ribosome biogen... 123 1.1e-13 2
UNIPROTKB|Q87VI5 - symbol:rsgA "Putative ribosome biogene... 184 5.0e-12 1
UNIPROTKB|Q8A8H7 - symbol:rsgA1 "Putative ribosome biogen... 131 8.7e-12 2
TIGR_CMR|SPO_2565 - symbol:SPO_2565 "GTPase, putative" sp... 119 2.2e-07 2
>TAIR|locus:2197618 [details] [associations]
symbol:emb1688 "embryo defective 1688" species:3702
"Arabidopsis thaliana" [GO:0003924 "GTPase activity" evidence=IEA]
[GO:0005525 "GTP binding" evidence=IEA;IBA] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] HAMAP:MF_01820 InterPro:IPR004881
InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936 GO:GO:0005525
EMBL:CP002684 GO:GO:0046872 GO:GO:0003924 GO:GO:0006184
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K06949
TIGRFAMs:TIGR00157 HOGENOM:HOG000006958 OMA:WERYPYY
ProtClustDB:CLSN2680781 EMBL:BT023457 IPI:IPI00547945
RefSeq:NP_176911.2 UniGene:At.35652 ProteinModelPortal:Q4V399
SMR:Q4V399 PRIDE:Q4V399 EnsemblPlants:AT1G67440.1 GeneID:843064
KEGG:ath:AT1G67440 TAIR:At1g67440 InParanoid:Q4V399
PhylomeDB:Q4V399 Genevestigator:Q4V399 Uniprot:Q4V399
Length = 433
Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
Identities = 256/330 (77%), Positives = 280/330 (84%)
Query: 1 MRVIVQQSEPSRTSDC-ND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ND KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297
ADTPGFNQPSLLKVTK SLA FPEI+ M+ E KC F +CLH+GEPGCVVKGDWERY
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERY 339
Query: 298 QYYFQLLDEIRIREEFQLRTFGTKREGDVR 327
YY QLLDEIRIREEFQLRTFGTKRE DVR
Sbjct: 340 PYYLQLLDEIRIREEFQLRTFGTKREDDVR 369
>UNIPROTKB|A8IGD6 [details] [associations]
symbol:CHLREDRAFT_49443 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003924 "GTPase activity"
evidence=IBA] [GO:0006184 "GTP catabolic process" evidence=IBA]
[GO:0042254 "ribosome biogenesis" evidence=IBA] HAMAP:MF_01820
InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936
GO:GO:0005525 GO:GO:0003924 GO:GO:0042254 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1162 KO:K06949 TIGRFAMs:TIGR00157
EMBL:DS496117 RefSeq:XP_001690400.1 STRING:A8IGD6 GeneID:5715970
KEGG:cre:CHLREDRAFT_49443 ProtClustDB:CLSN2680781 Uniprot:A8IGD6
Length = 308
Score = 379 (138.5 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 78/165 (47%), Positives = 108/165 (65%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC +R+LL+K+++ V+VGD V V ++DWV RG + V RS+ + DP VANV+H LL+
Sbjct: 2 LLCSLRSLLRKLRQDVVVGDVVRVEAVDWVAGRGAVSEVLPRSSRLTDPAVANVEHALLV 61
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFC 142
F++D P E ++RFLV E+ G+ +L LNK +LV EVL RL WGYEP+
Sbjct: 62 FALDTPPFEEQQVSRFLVAYEAAGVSFSLVLNKADLVAPEVL---AGRLAQAWGYEPVVL 118
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
S E+ G++ + RL D+ +V+ GPSG GKSSLIN LR H D
Sbjct: 119 SCETGEGVEQVAARLSDRVSVVAGPSGAGKSSLINLLRRGRHRPD 163
Score = 260 (96.6 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 52/109 (47%), Positives = 70/109 (64%)
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276
GRG HTT +SLL L GGG+LADTPGF QP+L + LA FPEI +++ +P C
Sbjct: 174 GRGMHTTTSISLLRLLGGGWLADTPGFGQPTLDDIASPQLAACFPEISDLV-GEQP--CR 230
Query: 277 FNNCLHLGEPGCVVKG-DWERYQYYFQLLDEIRIREEFQLRTFGTKREG 324
F++CLH+ EPGC V+G ERY +Y + L +IR + +L+ REG
Sbjct: 231 FSDCLHVAEPGCAVRGAGLERYAFYLRFLHDIRANDVTRLQRARADREG 279
>UNIPROTKB|Q81WH7 [details] [associations]
symbol:rsgA "Putative ribosome biogenesis GTPase RsgA"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01820
InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936
GO:GO:0005525 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1162 KO:K06949 TIGRFAMs:TIGR00157 HOGENOM:HOG000006958
OMA:DYLAMRT ProtClustDB:PRK00098 RefSeq:NP_846241.1
RefSeq:YP_020639.1 RefSeq:YP_029963.1 ProteinModelPortal:Q81WH7
SMR:Q81WH7 DNASU:1086726 EnsemblBacteria:EBBACT00000009592
EnsemblBacteria:EBBACT00000018161 EnsemblBacteria:EBBACT00000020710
GeneID:1086726 GeneID:2816551 GeneID:2850345 KEGG:ban:BA_3999
KEGG:bar:GBAA_3999 KEGG:bat:BAS3712
BioCyc:BANT260799:GJAJ-3770-MONOMER
BioCyc:BANT261594:GJ7F-3887-MONOMER Uniprot:Q81WH7
Length = 293
Score = 246 (91.7 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 59/158 (37%), Positives = 90/158 (56%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
S+ + +D L L +V+ G SGVGKSS++N LR
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR 180
Score = 206 (77.6 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 46/111 (41%), Positives = 64/111 (57%)
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
+ ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE+KE
Sbjct: 186 KTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPELKE-- 242
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
A++ C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 243 -ASQ--YCKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>TIGR_CMR|BA_3999 [details] [associations]
symbol:BA_3999 "conserved hypothetical protein TIGR00157"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193
PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003924
GO:GO:0006184 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1162 KO:K06949 TIGRFAMs:TIGR00157 HOGENOM:HOG000006958
OMA:DYLAMRT ProtClustDB:PRK00098 RefSeq:NP_846241.1
RefSeq:YP_020639.1 RefSeq:YP_029963.1 ProteinModelPortal:Q81WH7
SMR:Q81WH7 DNASU:1086726 EnsemblBacteria:EBBACT00000009592
EnsemblBacteria:EBBACT00000018161 EnsemblBacteria:EBBACT00000020710
GeneID:1086726 GeneID:2816551 GeneID:2850345 KEGG:ban:BA_3999
KEGG:bar:GBAA_3999 KEGG:bat:BAS3712
BioCyc:BANT260799:GJAJ-3770-MONOMER
BioCyc:BANT261594:GJ7F-3887-MONOMER Uniprot:Q81WH7
Length = 293
Score = 246 (91.7 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 59/158 (37%), Positives = 90/158 (56%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
S+ + +D L L +V+ G SGVGKSS++N LR
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR 180
Score = 206 (77.6 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 46/111 (41%), Positives = 64/111 (57%)
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
+ ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE+KE
Sbjct: 186 KTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPELKE-- 242
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
A++ C F C HL EP C VK E RY+ Y Q ++EIR R+
Sbjct: 243 -ASQ--YCKFRGCTHLSEPKCAVKAAVEEGKITEYRYKNYKQFVEEIRERK 290
>UNIPROTKB|Q3AC25 [details] [associations]
symbol:rsgA "Putative ribosome biogenesis GTPase RsgA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01820
InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936
GO:GO:0005525 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003924 GO:GO:0006184 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1162 KO:K06949 TIGRFAMs:TIGR00157
HOGENOM:HOG000006958 OMA:DYLAMRT RefSeq:YP_360309.1
ProteinModelPortal:Q3AC25 STRING:Q3AC25 GeneID:3726827
KEGG:chy:CHY_1477 PATRIC:21276085
BioCyc:CHYD246194:GJCN-1476-MONOMER Uniprot:Q3AC25
Length = 290
Score = 215 (80.7 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 20 TGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG + +C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD
Sbjct: 17 TGKAIYMCKARGKFKKDNIKILTGDRVIIRELV-PNSEGVIESLLPRKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTW 135
+LL+F+ P + R LV A + + + L NK +LV+ E + +K L
Sbjct: 76 QVLLVFAFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKILP-- 133
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + + G+D L L + +V+ GPSGVGKS+LIN L
Sbjct: 134 --KVVAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL 175
Score = 200 (75.5 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 47/105 (44%), Positives = 60/105 (57%)
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKA 269
GEVS K RG+HTTRHV L+ L GG++ADTPGF+ +L ++ K L FPE + K
Sbjct: 184 GEVSPKIKRGRHTTRHVELIKLPFGGFIADTPGFSNLTLPEMDKLELQSYFPEFNQNRKY 243
Query: 270 NEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C F NCLH+ EP C V+ E RY+ Y L+EI
Sbjct: 244 -----CYFPNCLHVKEPNCRVRELLETGEIPPFRYENYLTFLEEI 283
>TIGR_CMR|CHY_1477 [details] [associations]
symbol:CHY_1477 "GTP-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0005525 "GTP
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914
Pfam:PF03193 PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003924 GO:GO:0006184
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1162 KO:K06949 TIGRFAMs:TIGR00157 HOGENOM:HOG000006958
OMA:DYLAMRT RefSeq:YP_360309.1 ProteinModelPortal:Q3AC25
STRING:Q3AC25 GeneID:3726827 KEGG:chy:CHY_1477 PATRIC:21276085
BioCyc:CHYD246194:GJCN-1476-MONOMER Uniprot:Q3AC25
Length = 290
Score = 215 (80.7 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 20 TGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG + +C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD
Sbjct: 17 TGKAIYMCKARGKFKKDNIKILTGDRVIIRELV-PNSEGVIESLLPRKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTW 135
+LL+F+ P + R LV A + + + L NK +LV+ E + +K L
Sbjct: 76 QVLLVFAFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKILP-- 133
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + + G+D L L + +V+ GPSGVGKS+LIN L
Sbjct: 134 --KVVAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL 175
Score = 200 (75.5 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 47/105 (44%), Positives = 60/105 (57%)
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKA 269
GEVS K RG+HTTRHV L+ L GG++ADTPGF+ +L ++ K L FPE + K
Sbjct: 184 GEVSPKIKRGRHTTRHVELIKLPFGGFIADTPGFSNLTLPEMDKLELQSYFPEFNQNRKY 243
Query: 270 NEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
C F NCLH+ EP C V+ E RY+ Y L+EI
Sbjct: 244 -----CYFPNCLHVKEPNCRVRELLETGEIPPFRYENYLTFLEEI 283
>UNIPROTKB|Q9X242 [details] [associations]
symbol:rsgA "Putative ribosome biogenesis GTPase RsgA"
species:243274 "Thermotoga maritima MSB8" [GO:0003924 "GTPase
activity" evidence=IBA] [GO:0006184 "GTP catabolic process"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193
PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872 GO:GO:0003924
GO:GO:0042254 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AE000512 GenomeReviews:AE000512_GR eggNOG:COG1162 KO:K06949
TIGRFAMs:TIGR00157 OMA:DYLAMRT PIR:A72219 RefSeq:NP_229516.1
PDB:1U0L PDBsum:1U0L ProteinModelPortal:Q9X242 SMR:Q9X242
GeneID:897880 KEGG:tma:TM1717 PATRIC:23938410
EvolutionaryTrace:Q9X242 Uniprot:Q9X242
Length = 295
Score = 223 (83.6 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 51/165 (30%), Positives = 93/165 (56%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 21 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVAN 78
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
VD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L + +
Sbjct: 79 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 138
Query: 136 GYEPLF-CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
G P+ S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 139 GLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 183
Score = 146 (56.5 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 38/107 (35%), Positives = 52/107 (48%)
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
RV EVS K RG+HTT LL GGY+ DTPGF + + + L F E +
Sbjct: 190 RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGDK- 248
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEI 307
+C F++C H+ EP C VK E RY+ Y ++ E+
Sbjct: 249 ------QCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYEL 289
>UNIPROTKB|Q71YJ7 [details] [associations]
symbol:rsgA1 "Putative ribosome biogenesis GTPase RsgA 1"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914
Pfam:PF03193 PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872
GO:GO:0003924 GO:GO:0006184 EMBL:AE017262 GenomeReviews:AE017262_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1162 KO:K06949 TIGRFAMs:TIGR00157 RefSeq:YP_014440.1
ProteinModelPortal:Q71YJ7 STRING:Q71YJ7 GeneID:2799852
KEGG:lmf:LMOf2365_1847 PATRIC:20324987 HOGENOM:HOG000006958
OMA:DYLAMRT ProtClustDB:PRK00098 Uniprot:Q71YJ7
Length = 291
Score = 199 (75.1 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE+++
Sbjct: 184 KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPEMEDRR 242
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311
C F C+H EP C VK E RY++Y Q+L E++ R+
Sbjct: 243 SG-----CKFRGCMHDNEPNCAVKTAVEANEIAEFRYKHYIQILQELKNRK 288
Score = 177 (67.4 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 51/159 (32%), Positives = 77/159 (48%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPDK--EAIKDYISGKTAVIAGQSGVGKSTLLNSLNS 179
>TIGR_CMR|VC_0340 [details] [associations]
symbol:VC_0340 "ribosome small subunit-dependent GTPase A"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005525 "GTP
binding" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0043022 "ribosome binding" evidence=ISS] HAMAP:MF_01820
InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936
GO:GO:0005525 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003924 GO:GO:0006184 eggNOG:COG1162 KO:K06949
TIGRFAMs:TIGR00157 PIR:C82336 RefSeq:NP_229994.1
ProteinModelPortal:Q9KV18 SMR:Q9KV18 GeneID:2615076 KEGG:vch:VC0340
PATRIC:20079737 OMA:EDEAENT Uniprot:Q9KV18
Length = 387
Score = 210 (79.0 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 57/167 (34%), Positives = 93/167 (55%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNAL 226
Score = 124 (48.7 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
ED G +S SG G+HTT L + GG L D+PG + L + + + + E +
Sbjct: 232 EDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLWHLETDDVTKAYVEFR 291
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVVK 291
L C F +C H +PGC+++
Sbjct: 292 PYLGG-----CKFRDCKHGDDPGCLLR 313
>UNIPROTKB|Q8EJ79 [details] [associations]
symbol:rsgA "Putative ribosome biogenesis GTPase RsgA"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193
PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872 GO:GO:0003924
GO:GO:0006184 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG1162 KO:K06949 TIGRFAMs:TIGR00157 HOGENOM:HOG000006957
ProtClustDB:PRK12288 RefSeq:NP_716224.1 ProteinModelPortal:Q8EJ79
SMR:Q8EJ79 GeneID:1168460 KEGG:son:SO_0591 PATRIC:23520870
OMA:CFIEFRD Uniprot:Q8EJ79
Length = 354
Score = 181 (68.8 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 56/170 (32%), Positives = 93/170 (54%)
Query: 27 VVRALLKKIKRRVLVGDKVVVG-SIDWVDRRGM---IENVFQRSTEILDPPV-------- 74
+VR +++ ++ GDKV+V +I+ G+ +E V R + + P +
Sbjct: 65 IVRCNIRRTITSLVTGDKVIVRLAIESQANSGIAGIVEAVHPRHSSLSRPDLYDGVKIIA 124
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
+N+D +L++ S+ P + R+LV AE T IP + LNK++L+ E + L
Sbjct: 125 SNIDQILIVSSV-LPSFTTQIIDRYLVAAEDTDIPPIIILNKIDLLTPEEAPAIEEALKR 183
Query: 135 W---GYEPLFCSVESKLG--LDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ GY P++ V SKLG L+++ L+D+ +V G SGVGKSSL+NAL
Sbjct: 184 YQDIGY-PVY-KVSSKLGEGLETIKALLKDKVSVFAGQSGVGKSSLVNAL 231
Score = 146 (56.5 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 39/119 (32%), Positives = 59/119 (49%)
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
VG+VS SG G+HTT LL L GG L D+PG + +L + Q + F E ++ L
Sbjct: 239 VGDVSDNSGLGQHTTTTAKLLHLPSGGDLIDSPGVREFALWHLPAQRVGWCFIEFRDFLG 298
Query: 269 ANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQL---LDEIRIREEFQLRT 317
C F +C H +PGC +K +R+ Y ++ LDE R +F+ ++
Sbjct: 299 G-----CKFRDCKHGDDPGCALKAAVDAGKISEDRFNNYHRIIASLDEQRHARQFRAQS 352
>TIGR_CMR|SO_0591 [details] [associations]
symbol:SO_0591 "conserved hypothetical protein TIGR00157"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193
PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872 GO:GO:0003924
GO:GO:0006184 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG1162 KO:K06949 TIGRFAMs:TIGR00157 HOGENOM:HOG000006957
ProtClustDB:PRK12288 RefSeq:NP_716224.1 ProteinModelPortal:Q8EJ79
SMR:Q8EJ79 GeneID:1168460 KEGG:son:SO_0591 PATRIC:23520870
OMA:CFIEFRD Uniprot:Q8EJ79
Length = 354
Score = 181 (68.8 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 56/170 (32%), Positives = 93/170 (54%)
Query: 27 VVRALLKKIKRRVLVGDKVVVG-SIDWVDRRGM---IENVFQRSTEILDPPV-------- 74
+VR +++ ++ GDKV+V +I+ G+ +E V R + + P +
Sbjct: 65 IVRCNIRRTITSLVTGDKVIVRLAIESQANSGIAGIVEAVHPRHSSLSRPDLYDGVKIIA 124
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
+N+D +L++ S+ P + R+LV AE T IP + LNK++L+ E + L
Sbjct: 125 SNIDQILIVSSV-LPSFTTQIIDRYLVAAEDTDIPPIIILNKIDLLTPEEAPAIEEALKR 183
Query: 135 W---GYEPLFCSVESKLG--LDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ GY P++ V SKLG L+++ L+D+ +V G SGVGKSSL+NAL
Sbjct: 184 YQDIGY-PVY-KVSSKLGEGLETIKALLKDKVSVFAGQSGVGKSSLVNAL 231
Score = 146 (56.5 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 39/119 (32%), Positives = 59/119 (49%)
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
VG+VS SG G+HTT LL L GG L D+PG + +L + Q + F E ++ L
Sbjct: 239 VGDVSDNSGLGQHTTTTAKLLHLPSGGDLIDSPGVREFALWHLPAQRVGWCFIEFRDFLG 298
Query: 269 ANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQL---LDEIRIREEFQLRT 317
C F +C H +PGC +K +R+ Y ++ LDE R +F+ ++
Sbjct: 299 G-----CKFRDCKHGDDPGCALKAAVDAGKISEDRFNNYHRIIASLDEQRHARQFRAQS 352
>TIGR_CMR|CPS_4380 [details] [associations]
symbol:CPS_4380 "ribosome small subunit-dependent GTPase
A" species:167879 "Colwellia psychrerythraea 34H" [GO:0005525 "GTP
binding" evidence=ISS] HAMAP:MF_01820 InterPro:IPR004881
InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936 GO:GO:0005525
GO:GO:0046872 GO:GO:0003924 GO:GO:0006184 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG1162 KO:K06949
TIGRFAMs:TIGR00157 HOGENOM:HOG000006957 ProtClustDB:PRK12288
OMA:CFIEFRD RefSeq:YP_271029.1 ProteinModelPortal:Q47VZ3 SMR:Q47VZ3
STRING:Q47VZ3 GeneID:3521176 KEGG:cps:CPS_4380 PATRIC:21471605
BioCyc:CPSY167879:GI48-4389-MONOMER Uniprot:Q47VZ3
Length = 352
Score = 188 (71.2 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 59/173 (34%), Positives = 94/173 (54%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRST-----EILD---P 72
EL + R L++ ++ GDKV+ +G G+IE V +R + ++ D P
Sbjct: 62 ELGEIYRCNLRRSIGSLVCGDKVLWRLGRETQHSITGIIEAVHERDSVLSRPDVYDGVKP 121
Query: 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTW 128
AN+ +L++ S+ P + R+LV AE TGI + LNK +L+D EE N
Sbjct: 122 IAANISQILIVSSV-LPVFNSDIIDRYLVAAEQTGITPVIVLNKTDLLDSISAEEQENIA 180
Query: 129 KS-RLHT-WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
K +++ GY+ L+ S +S+ G+ L +L T++ VG SGVGKS+L+NAL
Sbjct: 181 KQLKIYQDIGYQVLYASSKSRDGISELKMQLAQHTSIFVGQSGVGKSTLVNAL 233
Score = 128 (50.1 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 29/80 (36%), Positives = 39/80 (48%)
Query: 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270
EVS SG G+HTT L + GG L D+PG + L +T + + F E E L
Sbjct: 243 EVSDNSGLGQHTTTVARLYHFNEGGDLIDSPGIREFGLWHLTPEQVCHGFVEFSEFL--- 299
Query: 271 EPAKCSFNNCLHLGEPGCVV 290
C F +C H +PGC +
Sbjct: 300 --GLCKFRDCKHQTDPGCAL 317
>UNIPROTKB|Q60BE0 [details] [associations]
symbol:rsgA "Putative ribosome biogenesis GTPase RsgA"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193
PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872 GO:GO:0003924
GO:GO:0006184 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AE017282 GenomeReviews:AE017282_GR KO:K06949
TIGRFAMs:TIGR00157 HOGENOM:HOG000006957 RefSeq:YP_113056.1
ProteinModelPortal:Q60BE0 GeneID:3103330 KEGG:mca:MCA0537
PATRIC:22604832 OMA:VNSANFP Uniprot:Q60BE0
Length = 299
Score = 168 (64.2 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 41/104 (39%), Positives = 55/104 (52%)
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEML 267
R+GE+S SG G+HTT +L L GGG L D+PG L +V LAQT+ + L
Sbjct: 190 RIGELSAHSGLGRHTTTSATLYSLPGGGELIDSPGVAVFGLAEVDPTELAQTYRDFHPYL 249
Query: 268 KANEPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLL 304
KC FN+C H+ + GC V+ E RY+ Y +LL
Sbjct: 250 -----GKCRFNDCRHVRDKGCAVREAVEAGTLSPARYERYLKLL 288
Score = 136 (52.9 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 51/173 (29%), Positives = 76/173 (43%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD---RRGMIENVFQRSTEILDPP- 73
D+TG +LC R RR+ GD V + W +G + V R + ++ P
Sbjct: 21 DETGRIVLCHTR-------RRL--GDAAVGDHVRWEPCEGDQGRVLEVLPRRSSLVRPAH 71
Query: 74 -------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN 126
AN+D + ++ + +P+ + + L E I L LNK++LV L
Sbjct: 72 GGRVRVVAANLDRVFVVLA-PEPEPDWLLADQILAVCEYRHITAALILNKIDLVGASALE 130
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
GYE S + GLD+L L +++ G SGVGKSSL NAL
Sbjct: 131 RALRDYEAAGYEVFRISTRTGAGLDALRSMLHTGCSMLSGQSGVGKSSLTNAL 183
>UNIPROTKB|P39286 [details] [associations]
symbol:rsgA "ribosome small subunit-dependent GTPase A"
species:83333 "Escherichia coli K-12" [GO:0006184 "GTP catabolic
process" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0019003 "GDP binding" evidence=IDA] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003924 "GTPase activity" evidence=IEA;IDA] HAMAP:MF_01820
InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936
GO:GO:0005525 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0003924 EMBL:U14003
GO:GO:0019003 GO:GO:0042274 PDB:4A2I PDBsum:4A2I eggNOG:COG1162
KO:K06949 TIGRFAMs:TIGR00157 PIR:S56389 RefSeq:NP_418585.4
RefSeq:YP_492306.1 ProteinModelPortal:P39286 SMR:P39286
DIP:DIP-12581N IntAct:P39286 PRIDE:P39286
EnsemblBacteria:EBESCT00000004806 EnsemblBacteria:EBESCT00000017424
GeneID:12932086 GeneID:948674 KEGG:ecj:Y75_p4050 KEGG:eco:b4161
PATRIC:32123895 EchoBASE:EB2372 EcoGene:EG12479
HOGENOM:HOG000006957 OMA:WERYPYY ProtClustDB:PRK12288
BioCyc:EcoCyc:G7841-MONOMER BioCyc:ECOL316407:JW4122-MONOMER
BioCyc:MetaCyc:G7841-MONOMER EvolutionaryTrace:P39286
Genevestigator:P39286 Uniprot:P39286
Length = 350
Score = 175 (66.7 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 51/168 (30%), Positives = 95/168 (56%)
Query: 27 VVRALLKKIKRRVLVGDKVV--VG--SIDWVDRRGMIENVFQRSTEILDP-------PVA 75
V R +++ R ++ GD+VV G + + V+ +G++E V +R++ + P P+A
Sbjct: 61 VHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIA 120
Query: 76 -NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
N+D ++++ ++ P+L + R+LV E+ I + LNK++L+D+E + ++
Sbjct: 121 ANIDQIVIVSAI-LPELSLNIIDRYLVACETLQIEPIIVLNKIDLLDDEGMAFVNEQMDI 179
Query: 135 W---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ GY L S ++ GL L + L + ++ G SGVGKSSL+NAL
Sbjct: 180 YRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNAL 227
Score = 118 (46.6 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270
++S SG G+HTT L GG + D+PG + L + + + Q F E + L
Sbjct: 238 DISDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYL--- 294
Query: 271 EPAKCSFNNCLHLGEPGCVVKGDWE-------RYQYYFQLLD---EIRIREEF 313
C + +C H +PGC ++ E R++ Y ++L+ +++ R+ F
Sbjct: 295 --GLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILESMAQVKTRKNF 345
>UNIPROTKB|Q74A60 [details] [associations]
symbol:rsgA "Putative ribosome biogenesis GTPase RsgA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914
Pfam:PF03193 PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872
GO:GO:0003924 GO:GO:0006184 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR012340 SUPFAM:SSF50249 KO:K06949 TIGRFAMs:TIGR00157
HOGENOM:HOG000006956 OMA:FPAVGDW RefSeq:NP_953576.1
ProteinModelPortal:Q74A60 GeneID:2687807 KEGG:gsu:GSU2530
PATRIC:22027909 BioCyc:GSUL243231:GH27-2499-MONOMER Uniprot:Q74A60
Length = 358
Score = 159 (61.0 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
+G V + +G+HTT H L+ L GGG + DTPG + L +V + + FPEI E+
Sbjct: 223 IGAVRERDAKGRHTTTHRQLILLPGGGIVIDTPGMREFGLWQVD-EGIDAAFPEIAELA- 280
Query: 269 ANEPAKCSFNNCLHLGEPGCVVK 291
A C F++C H EPGC V+
Sbjct: 281 ----AGCRFHDCSHRHEPGCAVR 299
Score = 116 (45.9 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 37/120 (30%), Positives = 53/120 (44%)
Query: 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
R E+ P ANVD + ++ +D L L RFL A +G + L K +L +
Sbjct: 102 RGAEV-QPVAANVDIVFIVAGLDGA-LNLRRLERFLAAARESGAEPVVLLTKSDLAGDPA 159
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV-IVGPSGVGKSSLINALRSSP 183
++ G + S G+D + L T +GPSGVGKSSL+N L P
Sbjct: 160 APAEEAATVAPGIRVMTVSSLDGAGVDEVGALLAPGVTACFIGPSGVGKSSLVNLLAGDP 219
>TIGR_CMR|GSU_2530 [details] [associations]
symbol:GSU_2530 "GTPase YjeQ" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01820
InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936
GO:GO:0005525 GO:GO:0046872 GO:GO:0003924 GO:GO:0006184
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR012340
SUPFAM:SSF50249 KO:K06949 TIGRFAMs:TIGR00157 HOGENOM:HOG000006956
OMA:FPAVGDW RefSeq:NP_953576.1 ProteinModelPortal:Q74A60
GeneID:2687807 KEGG:gsu:GSU2530 PATRIC:22027909
BioCyc:GSUL243231:GH27-2499-MONOMER Uniprot:Q74A60
Length = 358
Score = 159 (61.0 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLK 268
+G V + +G+HTT H L+ L GGG + DTPG + L +V + + FPEI E+
Sbjct: 223 IGAVRERDAKGRHTTTHRQLILLPGGGIVIDTPGMREFGLWQVD-EGIDAAFPEIAELA- 280
Query: 269 ANEPAKCSFNNCLHLGEPGCVVK 291
A C F++C H EPGC V+
Sbjct: 281 ----AGCRFHDCSHRHEPGCAVR 299
Score = 116 (45.9 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 37/120 (30%), Positives = 53/120 (44%)
Query: 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
R E+ P ANVD + ++ +D L L RFL A +G + L K +L +
Sbjct: 102 RGAEV-QPVAANVDIVFIVAGLDGA-LNLRRLERFLAAARESGAEPVVLLTKSDLAGDPA 159
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV-IVGPSGVGKSSLINALRSSP 183
++ G + S G+D + L T +GPSGVGKSSL+N L P
Sbjct: 160 APAEEAATVAPGIRVMTVSSLDGAGVDEVGALLAPGVTACFIGPSGVGKSSLVNLLAGDP 219
>UNIPROTKB|Q81RN4 [details] [associations]
symbol:rsgA "Putative ribosome biogenesis GTPase RsgA"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01820
InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936
GO:GO:0005525 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003924 GO:GO:0006184
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K06949
TIGRFAMs:TIGR00157 HOGENOM:HOG000006956 OMA:FPAVGDW
ProtClustDB:PRK01889 RefSeq:NP_844412.1 RefSeq:YP_018655.1
RefSeq:YP_028130.1 ProteinModelPortal:Q81RN4 IntAct:Q81RN4
DNASU:1083941 EnsemblBacteria:EBBACT00000010540
EnsemblBacteria:EBBACT00000013561 EnsemblBacteria:EBBACT00000019951
GeneID:1083941 GeneID:2819840 GeneID:2851304 KEGG:ban:BA_2008
KEGG:bar:GBAA_2008 KEGG:bat:BAS1866
BioCyc:BANT260799:GJAJ-1935-MONOMER
BioCyc:BANT261594:GJ7F-2009-MONOMER Uniprot:Q81RN4
Length = 364
Score = 140 (54.3 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
E + G++ + +G+HTT H L L G + DTPG + L + + ++ TF +I+
Sbjct: 232 EVAKTGDIREEDSKGRHTTTHRELFRLPSGSLVIDTPGMRELQLWEGS-DAIQTTFSDIE 290
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVV 290
E+ K C F +C H EPGC V
Sbjct: 291 ELAKT-----CRFRDCKHENEPGCAV 311
Score = 108 (43.1 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEI--------LDPPV--ANVDHLLLLFSMDQPK 90
VGD V + I+ +++ +I +F R + + V ANVD+L L+ +++
Sbjct: 81 VGDWVYIKKIE-NEKKAIIHRIFPRRSSFSRQEAGTRTEEQVIAANVDYLFLVNALNHD- 138
Query: 91 LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES--KL 148
+ R+L+ A +G + L K L ++ ++ G P+F V+S
Sbjct: 139 FNVRRIERYLLLAYESGAMPVIVLTKSSLCEDVEQKIVETEAVAIGV-PIFV-VDSLEHT 196
Query: 149 GLDSLLQRLRDQTTV-IVGPSGVGKSSLINAL 179
G++SL Q + T+ +VG SGVGKS+L+NAL
Sbjct: 197 GIESLQQFVTSGKTIALVGSSGVGKSTLLNAL 228
>TIGR_CMR|BA_2008 [details] [associations]
symbol:BA_2008 "conserved hypothetical protein TIGR00157"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193
PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003924
GO:GO:0006184 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
KO:K06949 TIGRFAMs:TIGR00157 HOGENOM:HOG000006956 OMA:FPAVGDW
ProtClustDB:PRK01889 RefSeq:NP_844412.1 RefSeq:YP_018655.1
RefSeq:YP_028130.1 ProteinModelPortal:Q81RN4 IntAct:Q81RN4
DNASU:1083941 EnsemblBacteria:EBBACT00000010540
EnsemblBacteria:EBBACT00000013561 EnsemblBacteria:EBBACT00000019951
GeneID:1083941 GeneID:2819840 GeneID:2851304 KEGG:ban:BA_2008
KEGG:bar:GBAA_2008 KEGG:bat:BAS1866
BioCyc:BANT260799:GJAJ-1935-MONOMER
BioCyc:BANT261594:GJ7F-2009-MONOMER Uniprot:Q81RN4
Length = 364
Score = 140 (54.3 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264
E + G++ + +G+HTT H L L G + DTPG + L + + ++ TF +I+
Sbjct: 232 EVAKTGDIREEDSKGRHTTTHRELFRLPSGSLVIDTPGMRELQLWEGS-DAIQTTFSDIE 290
Query: 265 EMLKANEPAKCSFNNCLHLGEPGCVV 290
E+ K C F +C H EPGC V
Sbjct: 291 ELAKT-----CRFRDCKHENEPGCAV 311
Score = 108 (43.1 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEI--------LDPPV--ANVDHLLLLFSMDQPK 90
VGD V + I+ +++ +I +F R + + V ANVD+L L+ +++
Sbjct: 81 VGDWVYIKKIE-NEKKAIIHRIFPRRSSFSRQEAGTRTEEQVIAANVDYLFLVNALNHD- 138
Query: 91 LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES--KL 148
+ R+L+ A +G + L K L ++ ++ G P+F V+S
Sbjct: 139 FNVRRIERYLLLAYESGAMPVIVLTKSSLCEDVEQKIVETEAVAIGV-PIFV-VDSLEHT 196
Query: 149 GLDSLLQRLRDQTTV-IVGPSGVGKSSLINAL 179
G++SL Q + T+ +VG SGVGKS+L+NAL
Sbjct: 197 GIESLQQFVTSGKTIALVGSSGVGKSTLLNAL 228
>UNIPROTKB|Q71ZZ0 [details] [associations]
symbol:rsgA2 "Putative ribosome biogenesis GTPase RsgA 2"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914
Pfam:PF03193 PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872
GO:GO:0003924 GO:GO:0006184 EMBL:AE017262 GenomeReviews:AE017262_GR
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1162 KO:K06949
TIGRFAMs:TIGR00157 RefSeq:YP_013947.1 ProteinModelPortal:Q71ZZ0
STRING:Q71ZZ0 GeneID:2797683 KEGG:lmf:LMOf2365_1349 PATRIC:20323937
HOGENOM:HOG000006956 OMA:FPAVGDW Uniprot:Q71ZZ0
Length = 346
Score = 123 (48.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277
+GKHTT H + L+ G + DTPG + + + L TF +++E+ + C F
Sbjct: 220 KGKHTTTHREMHLLTNGWIVIDTPGMREFGV-GFNQAGLETTFSDVEELAEG-----CRF 273
Query: 278 NNCLHLGEPGCVVKGDWE 295
++C H EPGC VK E
Sbjct: 274 HDCSHTQEPGCAVKAALE 291
Score = 123 (48.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 45/146 (30%), Positives = 75/146 (51%)
Query: 41 VGDKVVVGS----IDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFAL 96
VGD V V S + ++R+ + + + S E L AN D+ L++ S++ L
Sbjct: 63 VGDFVEVSSDAQILSVLERKTVFSRMNKDSEEQLI--AANFDYALIVMSLNHD-FNLNRL 119
Query: 97 TRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT--WGYEPLFCSVESKLGLDSLL 154
R+L A +G + L K +LV++ L + +L T +G + S G ++L
Sbjct: 120 ERYLTVAWDSGATPIIILTKADLVED--LTAFAQQLETVAYGVPAYYVDNLSHHGFEALE 177
Query: 155 QRLRDQTT-VIVGPSGVGKSSLINAL 179
+ L+ +T V++G SGVGKSS IN+L
Sbjct: 178 RDLKPNSTLVLLGSSGVGKSSFINSL 203
>UNIPROTKB|Q87VI5 [details] [associations]
symbol:rsgA "Putative ribosome biogenesis GTPase RsgA"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914
Pfam:PF03193 PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872
GO:GO:0003924 GO:GO:0006184 EMBL:AE016853 GenomeReviews:AE016853_GR
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1162 KO:K06949
TIGRFAMs:TIGR00157 HOGENOM:HOG000006957 ProtClustDB:PRK12288
RefSeq:NP_794684.1 ProteinModelPortal:Q87VI5 GeneID:1186636
KEGG:pst:PSPTO_4951 PATRIC:20001418 OMA:RAVIVLN
BioCyc:PSYR223283:GJIX-5018-MONOMER Uniprot:Q87VI5
Length = 343
Score = 184 (69.8 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 70/224 (31%), Positives = 104/224 (46%)
Query: 27 VVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI--------LDPPVANVD 78
V R L+ ++ GD+VV + + G+I R+TE+ L P ANVD
Sbjct: 70 VFRCHLRANLPALVTGDRVVWRAGN--QGIGVIVAQLPRTTELRRPDSRGQLKPVAANVD 127
Query: 79 HLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLH 133
++++F+ P EP A + R+LV AE GI L LNK +L+DE+ LN +
Sbjct: 128 LIVIVFA---PMPEPHANLIDRYLVAAEHAGIHPLLLLNKADLIDEQNAPALNALLAVYR 184
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL--RSSPHASDAADV 191
T GY L S G+ SL +L +V VG SGVGKSSL+N+L + ++V
Sbjct: 185 TLGYPVLEVSAHQGDGMQSLQSQLDGHISVFVGQSGVGKSSLVNSLLPETDTRVGPLSEV 244
Query: 192 DNW-FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
++ F R G++ G + HVS + G
Sbjct: 245 SGQGTHTTTTARLFHFPRGGDLIDSPGIREFGLGHVSRADVEAG 288
Score = 133 (51.9 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 32/88 (36%), Positives = 45/88 (51%)
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKE 265
D RVG +S SG+G HTT L GG L D+PG + L V++ + F E +
Sbjct: 235 DTRVGPLSEVSGQGTHTTTTARLFHFPRGGDLIDSPGIREFGLGHVSRADVEAGFIEFND 294
Query: 266 MLKANEPAKCSFNNCLHLGEPGC-VVKG 292
++ C F +C H EPGC ++KG
Sbjct: 295 LI-----GTCRFRDCKHDREPGCALLKG 317
>UNIPROTKB|Q8A8H7 [details] [associations]
symbol:rsgA1 "Putative ribosome biogenesis GTPase RsgA 1"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003924
"GTPase activity" evidence=IBA] [GO:0006184 "GTP catabolic process"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
HAMAP:MF_01820 InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193
PROSITE:PS50936 GO:GO:0005525 GO:GO:0046872 GO:GO:0003924
GO:GO:0042254 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AE015928 GenomeReviews:AE015928_GR RefSeq:NP_810103.1
ProteinModelPortal:Q8A8H7 GeneID:1073808 KEGG:bth:BT_1190
PATRIC:21057209 eggNOG:COG1162 KO:K06949 OMA:RFADCAH
BioCyc:BTHE226186:GJXV-1210-MONOMER TIGRFAMs:TIGR00157
Uniprot:Q8A8H7
Length = 355
Score = 131 (51.2 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKAN 270
++S +G+G+HT+ ++ + G G L DTPG + L SL + F EI + ++
Sbjct: 227 DISLSTGKGRHTSTRREMVLMDGSGVLIDTPGVREFGLAIDNPDSLTEMF-EISDYAES- 284
Query: 271 EPAKCSFNNCLHLGEPGCVV 290
C F++C H+ EPGC V
Sbjct: 285 ----CRFSDCKHIDEPGCAV 300
Score = 96 (38.9 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTW 135
VD ++ S+D RF+ + I L LNK +L D + ++ ++ H
Sbjct: 115 VDKAFIVQSLDD-NFNVRRAERFIAQVMEEKIKPVLVLNKADLGCDRQKID--EAIKHIA 171
Query: 136 GYEPLFC-SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINAL--RSSPHASD 187
P+F S+ + L + + + +T V VG SGVGKSSL+NAL +S + SD
Sbjct: 172 RQFPVFITSIRQPQTILRLRESITKGETVVFVGSSGVGKSSLVNALCGKSVLNTSD 227
>TIGR_CMR|SPO_2565 [details] [associations]
symbol:SPO_2565 "GTPase, putative" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0005525 "GTP binding" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] HAMAP:MF_01820
InterPro:IPR004881 InterPro:IPR010914 Pfam:PF03193 PROSITE:PS50936
GO:GO:0005525 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872
GO:GO:0003924 GO:GO:0006184 KO:K06949 TIGRFAMs:TIGR00157
HOGENOM:HOG000006956 OMA:FPAVGDW RefSeq:YP_167778.1
ProteinModelPortal:Q5LQC7 GeneID:3194286 KEGG:sil:SPO2565
PATRIC:23378535 ProtClustDB:PRK01889 Uniprot:Q5LQC7
Length = 360
Score = 119 (46.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 30/93 (32%), Positives = 44/93 (47%)
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+L S++ E Q + E K G+HTT L + G + DTPG + L +
Sbjct: 221 LLDSQFIETQTIREDDAK---GRHTTTRRELHAMPNGCLILDTPGMRELQLTDAA-DGIN 276
Query: 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVV 290
F +I+E+ +C FN+C H EPGC V
Sbjct: 277 DLFADIQELA-----TQCRFNDCQHETEPGCAV 304
Score = 67 (28.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 29/109 (26%), Positives = 46/109 (42%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D + ++ S +Q + L R+ A I + + K +LV + +R +
Sbjct: 117 ANIDTVFIVTSCNQD-FKVARLERYAALAFEARITPVIVVTKTDLVTDAQSYIDAARAVS 175
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTV-IVGPSGVGKSSLINALRSS 182
E + L + TV +G SGVGKS+L NAL S
Sbjct: 176 EMIEVVALDARGSAPKADLAAWCKPGKTVAFLGSSGVGKSTLANALLDS 224
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 327 327 0.00088 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 612 (65 KB)
Total size of DFA: 233 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.94u 0.34s 26.28t Elapsed: 00:00:01
Total cpu time: 25.95u 0.34s 26.29t Elapsed: 00:00:01
Start: Sat May 11 14:54:45 2013 End: Sat May 11 14:54:46 2013