Query 020346
Match_columns 327
No_of_seqs 341 out of 3108
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1162 Predicted GTPases [Gen 100.0 1E-57 2.2E-62 425.8 26.2 282 1-312 5-297 (301)
2 PRK12289 GTPase RsgA; Reviewed 100.0 4.2E-57 9.1E-62 436.1 29.2 298 1-326 9-311 (352)
3 PRK12288 GTPase RsgA; Reviewed 100.0 8.3E-54 1.8E-58 412.8 27.9 277 1-310 40-336 (347)
4 PRK00098 GTPase RsgA; Reviewed 100.0 1.8E-50 3.9E-55 383.1 28.3 280 1-310 1-295 (298)
5 cd01854 YjeQ_engC YjeQ/EngC. 100.0 1.2E-50 2.6E-55 382.4 25.9 272 3-305 1-287 (287)
6 TIGR00157 ribosome small subun 100.0 1.2E-47 2.6E-52 354.3 22.5 237 39-305 1-245 (245)
7 PRK01889 GTPase RsgA; Reviewed 100.0 1.3E-45 2.9E-50 357.6 24.6 274 1-310 29-325 (356)
8 PF03193 DUF258: Protein of un 100.0 9.8E-33 2.1E-37 238.5 9.6 153 126-305 2-161 (161)
9 COG1126 GlnQ ABC-type polar am 99.9 1.4E-26 3E-31 206.5 1.2 156 136-311 4-186 (240)
10 COG2884 FtsE Predicted ATPase 99.9 1.5E-25 3.3E-30 196.1 4.7 159 136-312 3-188 (223)
11 COG3839 MalK ABC-type sugar tr 99.9 3.4E-25 7.3E-30 211.7 4.2 138 135-295 4-161 (338)
12 COG1116 TauB ABC-type nitrate/ 99.9 4.5E-25 9.7E-30 201.1 4.3 133 136-294 5-157 (248)
13 COG3842 PotA ABC-type spermidi 99.9 2.9E-25 6.4E-30 213.2 3.1 153 135-310 6-182 (352)
14 COG1120 FepC ABC-type cobalami 99.9 1.2E-24 2.6E-29 200.9 4.4 142 136-295 4-166 (258)
15 COG1135 AbcC ABC-type metal io 99.9 2.7E-24 5.8E-29 200.6 2.9 155 138-310 5-190 (339)
16 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.3E-23 2.9E-28 193.2 6.6 154 135-312 5-190 (254)
17 COG0410 LivF ABC-type branched 99.9 8.1E-24 1.8E-28 190.5 3.8 158 136-310 5-185 (237)
18 COG1136 SalX ABC-type antimicr 99.9 3.5E-24 7.5E-29 194.4 1.3 156 138-310 5-191 (226)
19 COG1125 OpuBA ABC-type proline 99.9 2.4E-23 5.3E-28 189.6 4.2 151 136-307 3-181 (309)
20 COG3638 ABC-type phosphate/pho 99.9 2.7E-23 5.7E-28 187.6 3.3 162 135-311 4-197 (258)
21 COG1124 DppF ABC-type dipeptid 99.9 8.3E-23 1.8E-27 185.2 5.3 155 136-310 5-190 (252)
22 COG1127 Ttg2A ABC-type transpo 99.9 9.8E-23 2.1E-27 184.4 3.7 158 135-310 9-194 (263)
23 KOG0058 Peptide exporter, ABC 99.9 1.3E-22 2.8E-27 206.4 4.8 142 135-294 466-631 (716)
24 KOG0057 Mitochondrial Fe/S clu 99.9 8.3E-23 1.8E-27 202.1 2.8 134 135-294 352-514 (591)
25 COG3840 ThiQ ABC-type thiamine 99.9 1.8E-22 4E-27 175.8 4.0 149 138-311 5-179 (231)
26 COG1118 CysA ABC-type sulfate/ 99.9 3.3E-22 7.2E-27 186.4 5.3 151 137-310 5-186 (345)
27 COG1117 PstB ABC-type phosphat 99.9 2E-22 4.4E-27 179.5 3.7 162 135-309 8-197 (253)
28 COG2274 SunT ABC-type bacterio 99.8 4.6E-22 1E-26 207.1 4.2 142 135-294 472-636 (709)
29 TIGR02868 CydC thiol reductant 99.8 4.8E-22 1E-26 201.9 3.6 143 134-295 334-498 (529)
30 COG1122 CbiO ABC-type cobalt t 99.8 1.9E-21 4.2E-26 178.4 5.7 154 137-311 6-188 (235)
31 cd03261 ABC_Org_Solvent_Resist 99.8 1.6E-21 3.5E-26 178.2 4.9 158 137-309 3-184 (235)
32 PRK11432 fbpC ferric transport 99.8 8E-22 1.7E-26 191.1 2.3 151 135-308 7-183 (351)
33 PRK11650 ugpC glycerol-3-phosp 99.8 9.3E-22 2E-26 191.0 2.7 152 135-309 4-182 (356)
34 cd03259 ABC_Carb_Solutes_like 99.8 1.7E-21 3.6E-26 175.5 4.1 152 137-309 3-178 (213)
35 COG1132 MdlB ABC-type multidru 99.8 1.6E-21 3.6E-26 199.7 3.2 142 135-294 329-492 (567)
36 PRK13537 nodulation ABC transp 99.8 2.5E-21 5.5E-26 184.4 3.8 156 135-310 8-187 (306)
37 KOG0056 Heavy metal exporter H 99.8 6.5E-22 1.4E-26 193.3 -0.5 143 134-294 537-701 (790)
38 TIGR02314 ABC_MetN D-methionin 99.8 1.5E-21 3.2E-26 188.7 1.8 157 136-310 3-189 (343)
39 PRK09452 potA putrescine/sperm 99.8 2E-21 4.2E-26 189.9 2.5 152 135-309 15-192 (375)
40 cd03265 ABC_DrrA DrrA is the A 99.8 2.6E-21 5.7E-26 175.1 2.9 151 137-309 3-179 (220)
41 TIGR03265 PhnT2 putative 2-ami 99.8 1.8E-21 3.8E-26 188.9 1.5 151 135-308 5-181 (353)
42 PRK10851 sulfate/thiosulfate t 99.8 2.9E-21 6.3E-26 187.4 3.0 151 136-309 4-184 (353)
43 cd03229 ABC_Class3 This class 99.8 5.1E-21 1.1E-25 168.1 4.1 140 137-310 3-149 (178)
44 PRK11174 cysteine/glutathione 99.8 3.8E-21 8.3E-26 197.6 3.8 141 135-294 350-512 (588)
45 cd03226 ABC_cobalt_CbiO_domain 99.8 3.1E-21 6.6E-26 172.9 2.6 148 138-309 3-174 (205)
46 cd03266 ABC_NatA_sodium_export 99.8 2.7E-21 6E-26 174.5 2.3 154 137-309 4-184 (218)
47 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2.3E-21 4.9E-26 203.5 1.9 143 135-295 478-643 (710)
48 cd03301 ABC_MalK_N The N-termi 99.8 6.1E-21 1.3E-25 171.6 4.4 152 137-309 3-178 (213)
49 cd03216 ABC_Carb_Monos_I This 99.8 5.4E-21 1.2E-25 166.0 3.8 121 137-309 3-130 (163)
50 TIGR00960 3a0501s02 Type II (G 99.8 1.7E-21 3.6E-26 175.8 0.6 155 137-309 4-186 (216)
51 cd03218 ABC_YhbG The ABC trans 99.8 3E-21 6.6E-26 175.8 2.3 155 137-309 3-181 (232)
52 cd01858 NGP_1 NGP-1. Autoanti 99.8 2.8E-19 6E-24 153.8 14.4 142 72-243 4-157 (157)
53 cd03296 ABC_CysA_sulfate_impor 99.8 5.9E-21 1.3E-25 175.1 4.1 154 136-309 4-184 (239)
54 TIGR02673 FtsE cell division A 99.8 2.7E-21 5.8E-26 174.1 1.8 158 137-309 4-185 (214)
55 cd03262 ABC_HisP_GlnQ_permease 99.8 6.1E-21 1.3E-25 171.5 4.1 157 137-309 3-183 (213)
56 PRK11000 maltose/maltodextrin 99.8 3.7E-21 8E-26 187.7 2.7 152 135-309 4-181 (369)
57 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 5.6E-21 1.2E-25 199.9 4.0 142 134-294 451-615 (686)
58 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 4.2E-21 9E-26 173.3 2.6 158 137-309 3-188 (218)
59 PRK13536 nodulation factor exp 99.8 5.5E-21 1.2E-25 184.6 3.5 156 135-310 42-221 (340)
60 COG1137 YhbG ABC-type (unclass 99.8 7.7E-22 1.7E-26 174.2 -2.3 158 137-311 7-189 (243)
61 cd03225 ABC_cobalt_CbiO_domain 99.8 1.5E-20 3.2E-25 168.9 5.7 153 138-309 3-182 (211)
62 TIGR01288 nodI ATP-binding ABC 99.8 7.3E-21 1.6E-25 180.8 3.8 154 136-309 6-183 (303)
63 cd03263 ABC_subfamily_A The AB 99.8 5.1E-21 1.1E-25 173.0 2.6 153 137-308 3-180 (220)
64 PRK09536 btuD corrinoid ABC tr 99.8 2.9E-21 6.2E-26 190.1 0.7 153 136-309 5-187 (402)
65 cd03224 ABC_TM1139_LivF_branch 99.8 3.9E-21 8.5E-26 173.8 1.5 156 137-309 3-180 (222)
66 TIGR03258 PhnT 2-aminoethylpho 99.8 4.4E-21 9.5E-26 186.7 1.6 152 135-309 6-185 (362)
67 cd03219 ABC_Mj1267_LivG_branch 99.8 1E-20 2.2E-25 172.8 3.9 156 137-309 3-191 (236)
68 TIGR02315 ABC_phnC phosphonate 99.8 7.3E-21 1.6E-25 174.5 2.9 158 137-309 4-193 (243)
69 cd03268 ABC_BcrA_bacitracin_re 99.8 3.3E-21 7.1E-26 173.0 0.6 153 137-309 3-174 (208)
70 cd03256 ABC_PhnC_transporter A 99.8 5.7E-21 1.2E-25 174.8 2.0 158 137-309 3-192 (241)
71 TIGR01188 drrA daunorubicin re 99.8 3.7E-21 8E-26 182.7 0.6 146 143-310 2-173 (302)
72 COG1131 CcmA ABC-type multidru 99.8 1E-20 2.2E-25 179.2 3.6 154 136-311 6-186 (293)
73 cd03258 ABC_MetN_methionine_tr 99.8 7.3E-21 1.6E-25 173.6 2.3 157 137-309 4-188 (233)
74 cd03230 ABC_DR_subfamily_A Thi 99.8 2.4E-20 5.3E-25 163.1 5.5 133 137-309 3-143 (173)
75 cd03295 ABC_OpuCA_Osmoprotecti 99.8 9.4E-21 2E-25 174.0 2.9 154 137-309 3-183 (242)
76 cd03246 ABCC_Protease_Secretio 99.8 1.5E-20 3.3E-25 164.4 3.9 133 137-309 3-144 (173)
77 PRK11607 potG putrescine trans 99.8 6.7E-21 1.4E-25 186.3 1.9 137 135-294 20-176 (377)
78 PRK13647 cbiO cobalt transport 99.8 4.8E-21 1E-25 179.6 0.8 153 136-309 6-186 (274)
79 PRK10895 lipopolysaccharide AB 99.8 1.3E-20 2.8E-25 172.9 3.7 157 136-309 5-185 (241)
80 cd03231 ABC_CcmA_heme_exporter 99.8 1.4E-20 2.9E-25 168.5 3.6 151 137-309 3-173 (201)
81 cd03264 ABC_drug_resistance_li 99.8 6.1E-21 1.3E-25 171.6 1.2 151 137-308 3-177 (211)
82 cd03235 ABC_Metallic_Cations A 99.8 8.6E-21 1.9E-25 170.8 2.0 149 138-309 3-180 (213)
83 cd03214 ABC_Iron-Siderophores_ 99.8 6.8E-21 1.5E-25 167.6 1.1 137 137-309 2-145 (180)
84 TIGR02211 LolD_lipo_ex lipopro 99.8 9.7E-21 2.1E-25 171.3 2.1 157 137-309 4-189 (221)
85 PRK11153 metN DL-methionine tr 99.8 7.6E-21 1.7E-25 183.8 1.5 155 137-309 4-188 (343)
86 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.4E-20 3.1E-25 170.3 3.2 148 137-308 3-178 (220)
87 PRK13538 cytochrome c biogenes 99.8 1.4E-20 2.9E-25 168.8 2.8 151 137-309 4-177 (204)
88 TIGR01186 proV glycine betaine 99.8 1E-20 2.2E-25 184.1 2.1 149 143-308 2-176 (363)
89 PRK09493 glnQ glutamine ABC tr 99.8 1.9E-20 4.2E-25 171.6 3.8 157 137-309 4-184 (240)
90 TIGR01189 ccmA heme ABC export 99.8 1E-20 2.2E-25 168.7 1.8 150 137-308 3-174 (198)
91 cd03292 ABC_FtsE_transporter F 99.8 8.5E-21 1.8E-25 170.7 1.2 155 137-309 3-184 (214)
92 TIGR02857 CydD thiol reductant 99.8 2.1E-20 4.5E-25 190.0 4.2 143 134-294 320-485 (529)
93 TIGR03375 type_I_sec_LssB type 99.8 1.4E-20 3.1E-25 197.1 2.9 143 134-294 463-628 (694)
94 PRK11629 lolD lipoprotein tran 99.8 1.1E-20 2.3E-25 172.7 1.6 159 136-309 7-193 (233)
95 PRK13540 cytochrome c biogenes 99.8 9.4E-21 2E-25 169.3 1.2 154 137-309 4-175 (200)
96 COG4988 CydD ABC-type transpor 99.8 3.1E-20 6.6E-25 185.7 5.0 155 137-309 323-504 (559)
97 TIGR01193 bacteriocin_ABC ABC- 99.8 1.5E-20 3.3E-25 197.3 2.9 143 134-294 473-638 (708)
98 PRK13650 cbiO cobalt transport 99.8 1E-20 2.3E-25 177.7 1.5 153 136-309 6-188 (279)
99 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 1.4E-20 3E-25 172.3 2.2 152 137-308 4-179 (236)
100 cd03228 ABCC_MRP_Like The MRP 99.8 3.1E-20 6.7E-25 162.1 4.3 132 137-308 3-143 (171)
101 PRK10908 cell division protein 99.8 1.1E-20 2.4E-25 171.3 1.5 157 137-309 4-185 (222)
102 PRK10790 putative multidrug tr 99.8 2.2E-20 4.7E-25 192.3 3.9 141 135-294 341-503 (592)
103 cd03260 ABC_PstB_phosphate_tra 99.8 2.5E-20 5.5E-25 169.4 3.8 157 137-309 3-189 (227)
104 cd03269 ABC_putative_ATPase Th 99.8 1E-20 2.3E-25 169.9 1.0 150 137-309 3-176 (210)
105 PRK11264 putative amino-acid A 99.8 3E-20 6.6E-25 171.2 4.0 161 136-309 5-192 (250)
106 KOG0055 Multidrug/pheromone ex 99.8 1.8E-20 3.8E-25 200.3 2.8 156 134-307 350-535 (1228)
107 COG0411 LivG ABC-type branched 99.8 3.2E-21 6.9E-26 175.0 -2.6 161 137-310 7-198 (250)
108 PRK11176 lipid transporter ATP 99.8 2.3E-20 5E-25 191.5 3.4 140 135-294 342-507 (582)
109 PRK14250 phosphate ABC transpo 99.8 2.1E-20 4.6E-25 171.8 2.7 157 135-309 4-179 (241)
110 PRK13638 cbiO cobalt transport 99.8 5.1E-20 1.1E-24 172.1 5.3 156 137-309 4-184 (271)
111 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 1.1E-18 2.5E-23 147.6 13.1 134 72-246 7-141 (141)
112 PRK11160 cysteine/glutathione 99.8 3.1E-20 6.8E-25 190.7 4.1 142 134-294 338-502 (574)
113 PRK10584 putative ABC transpor 99.8 2.2E-20 4.8E-25 169.8 2.6 157 136-309 8-194 (228)
114 PRK11231 fecE iron-dicitrate t 99.8 1.1E-20 2.3E-25 175.0 0.6 156 136-309 4-186 (255)
115 PRK13635 cbiO cobalt transport 99.8 1.5E-20 3.3E-25 176.7 1.4 156 135-309 6-188 (279)
116 PRK10575 iron-hydroxamate tran 99.8 1.8E-20 3.8E-25 174.8 1.8 157 135-309 12-195 (265)
117 TIGR01166 cbiO cobalt transpor 99.8 2.1E-20 4.6E-25 165.5 2.2 148 145-309 3-175 (190)
118 TIGR03608 L_ocin_972_ABC putat 99.8 8E-21 1.7E-25 169.9 -0.5 157 138-309 2-182 (206)
119 cd03217 ABC_FeS_Assembly ABC-t 99.8 6.5E-20 1.4E-24 164.1 5.3 141 137-309 3-152 (200)
120 TIGR03411 urea_trans_UrtD urea 99.8 1.7E-20 3.7E-25 172.1 1.5 155 137-308 5-190 (242)
121 TIGR00958 3a01208 Conjugate Tr 99.8 1.5E-20 3.1E-25 197.6 1.2 143 135-295 479-645 (711)
122 PRK11831 putative ABC transpor 99.8 4E-20 8.8E-25 172.7 4.0 156 136-309 9-191 (269)
123 TIGR03410 urea_trans_UrtE urea 99.8 4.4E-20 9.6E-25 168.1 4.1 155 137-309 3-179 (230)
124 COG4598 HisP ABC-type histidin 99.8 1.2E-20 2.6E-25 164.4 0.4 163 135-313 7-204 (256)
125 PRK11247 ssuB aliphatic sulfon 99.8 4.2E-20 9.1E-25 171.9 4.0 148 135-308 13-180 (257)
126 TIGR03522 GldA_ABC_ATP gliding 99.8 1.2E-20 2.5E-25 179.3 0.3 153 136-308 4-180 (301)
127 PRK10253 iron-enterobactin tra 99.8 2.4E-20 5.2E-25 173.8 2.2 157 135-309 8-191 (265)
128 PRK11300 livG leucine/isoleuci 99.8 2.1E-20 4.6E-25 172.7 1.8 157 136-309 7-201 (255)
129 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2.3E-20 5.1E-25 174.4 2.1 158 137-309 27-208 (269)
130 PRK11124 artP arginine transpo 99.8 3.7E-20 7.9E-25 170.0 3.3 158 136-309 4-189 (242)
131 PRK13637 cbiO cobalt transport 99.8 2.2E-20 4.8E-25 176.3 1.9 155 136-309 4-192 (287)
132 cd03257 ABC_NikE_OppD_transpor 99.8 8.6E-20 1.9E-24 165.5 5.6 158 137-309 4-193 (228)
133 KOG0055 Multidrug/pheromone ex 99.8 3.5E-20 7.6E-25 198.0 3.6 140 134-294 987-1153(1228)
134 PRK13657 cyclic beta-1,2-gluca 99.8 3.9E-20 8.4E-25 190.3 3.8 142 135-294 335-498 (588)
135 PRK13644 cbiO cobalt transport 99.8 5.2E-20 1.1E-24 172.6 4.3 153 137-309 4-184 (274)
136 PRK13632 cbiO cobalt transport 99.8 2.5E-20 5.5E-25 174.3 2.1 156 135-309 8-190 (271)
137 PRK13548 hmuV hemin importer A 99.8 2E-20 4.4E-25 173.8 1.4 154 137-308 5-187 (258)
138 PRK13652 cbiO cobalt transport 99.8 3.7E-20 8E-25 173.8 3.0 155 136-309 5-185 (277)
139 COG4525 TauB ABC-type taurine 99.8 2.3E-19 5E-24 158.2 7.8 136 136-295 5-160 (259)
140 TIGR02203 MsbA_lipidA lipid A 99.8 1.6E-20 3.6E-25 192.0 0.6 143 135-295 331-497 (571)
141 cd03233 ABC_PDR_domain1 The pl 99.8 8.2E-20 1.8E-24 163.8 5.0 148 136-309 5-166 (202)
142 TIGR03005 ectoine_ehuA ectoine 99.8 7.2E-20 1.6E-24 169.1 4.7 160 137-309 3-194 (252)
143 PRK10247 putative ABC transpor 99.8 2.8E-20 6.1E-25 169.3 1.9 156 136-309 9-185 (225)
144 cd03247 ABCC_cytochrome_bd The 99.8 3.7E-20 8E-25 162.6 2.5 133 137-307 3-144 (178)
145 PRK11614 livF leucine/isoleuci 99.8 3.6E-20 7.8E-25 169.5 2.5 157 136-309 7-185 (237)
146 TIGR01978 sufC FeS assembly AT 99.8 7.7E-20 1.7E-24 167.6 4.3 156 137-309 3-192 (243)
147 TIGR03873 F420-0_ABC_ATP propo 99.8 2.6E-20 5.6E-25 172.6 1.2 156 136-309 3-185 (256)
148 COG4175 ProV ABC-type proline/ 99.8 2.3E-20 4.9E-25 174.7 0.6 130 148-294 42-191 (386)
149 cd03215 ABC_Carb_Monos_II This 99.8 3.4E-20 7.4E-25 163.4 1.7 138 138-309 8-152 (182)
150 PRK11248 tauB taurine transpor 99.8 6.8E-20 1.5E-24 170.1 3.4 147 137-307 4-174 (255)
151 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.2E-19 2.6E-24 163.1 5.0 151 137-309 3-176 (211)
152 PRK13543 cytochrome c biogenes 99.8 4.9E-20 1.1E-24 166.4 2.4 151 135-309 12-185 (214)
153 cd03245 ABCC_bacteriocin_expor 99.8 5.7E-20 1.2E-24 166.1 2.5 155 136-308 4-187 (220)
154 PRK13631 cbiO cobalt transport 99.8 1.3E-19 2.9E-24 173.6 4.7 161 135-309 22-224 (320)
155 cd03252 ABCC_Hemolysin The ABC 99.8 7.8E-20 1.7E-24 167.2 2.9 153 137-307 3-184 (237)
156 TIGR02982 heterocyst_DevA ABC 99.8 1.1E-19 2.3E-24 164.8 3.6 158 137-309 4-189 (220)
157 PTZ00265 multidrug resistance 99.8 6.1E-20 1.3E-24 204.9 2.3 139 135-294 1166-1385(1466)
158 cd03213 ABCG_EPDR ABCG transpo 99.8 1.6E-19 3.5E-24 160.9 4.6 140 136-309 5-159 (194)
159 PRK11701 phnK phosphonate C-P 99.8 1.6E-19 3.4E-24 167.5 4.4 160 136-309 8-199 (258)
160 PRK13643 cbiO cobalt transport 99.8 1.4E-19 3.1E-24 170.9 4.2 156 137-309 4-192 (288)
161 cd03369 ABCC_NFT1 Domain 2 of 99.8 7.4E-20 1.6E-24 164.2 2.1 151 135-307 7-171 (207)
162 PRK10619 histidine/lysine/argi 99.8 1E-19 2.2E-24 168.6 3.1 162 135-309 6-200 (257)
163 TIGR00972 3a0107s01c2 phosphat 99.8 6.5E-20 1.4E-24 169.0 1.7 157 137-309 4-192 (247)
164 COG4604 CeuD ABC-type enteroch 99.8 3.5E-20 7.5E-25 163.5 -0.1 137 137-294 4-162 (252)
165 cd03254 ABCC_Glucan_exporter_l 99.8 1.2E-19 2.5E-24 165.1 3.2 155 135-307 3-185 (229)
166 TIGR02204 MsbA_rel ABC transpo 99.8 9.6E-20 2.1E-24 186.7 3.0 142 135-294 338-503 (576)
167 PRK13641 cbiO cobalt transport 99.8 4E-20 8.6E-25 174.5 0.1 159 136-309 4-193 (287)
168 PRK10744 pstB phosphate transp 99.8 2.5E-19 5.4E-24 166.5 5.4 158 135-308 14-203 (260)
169 TIGR03740 galliderm_ABC gallid 99.8 1.1E-19 2.3E-24 165.0 2.8 151 137-309 3-172 (223)
170 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.1E-19 2.4E-24 185.9 3.3 137 134-294 337-497 (555)
171 TIGR02769 nickel_nikE nickel i 99.8 2E-19 4.3E-24 167.7 4.5 158 137-309 5-198 (265)
172 PLN03130 ABC transporter C fam 99.8 1.5E-19 3.3E-24 203.4 4.4 138 135-294 1238-1401(1622)
173 PRK13539 cytochrome c biogenes 99.8 6.4E-20 1.4E-24 164.9 1.0 151 136-310 4-176 (207)
174 TIGR01277 thiQ thiamine ABC tr 99.8 2E-19 4.4E-24 162.1 4.1 151 137-309 3-176 (213)
175 PRK13646 cbiO cobalt transport 99.8 2.3E-19 5.1E-24 169.2 4.7 159 136-309 4-193 (286)
176 PRK13636 cbiO cobalt transport 99.8 2.9E-19 6.4E-24 168.2 5.4 157 136-309 7-189 (283)
177 PRK14247 phosphate ABC transpo 99.8 1.8E-19 3.9E-24 166.2 3.8 154 136-307 5-192 (250)
178 PLN03232 ABC transporter C fam 99.8 1.6E-19 3.5E-24 202.5 4.1 138 135-294 1235-1398(1495)
179 PRK13633 cobalt transporter AT 99.8 3.6E-19 7.8E-24 167.4 5.8 156 136-309 6-192 (280)
180 COG4181 Predicted ABC-type tra 99.8 5E-20 1.1E-24 159.3 -0.1 133 146-295 22-174 (228)
181 PRK13648 cbiO cobalt transport 99.8 3E-19 6.6E-24 166.8 5.1 156 135-309 8-190 (269)
182 PRK15112 antimicrobial peptide 99.8 2.4E-19 5.3E-24 167.3 4.4 156 136-309 6-197 (267)
183 PRK11022 dppD dipeptide transp 99.8 8.7E-20 1.9E-24 175.3 1.4 157 136-309 5-201 (326)
184 PRK09700 D-allose transporter 99.8 8.4E-20 1.8E-24 184.9 1.3 158 136-310 7-194 (510)
185 PRK13649 cbiO cobalt transport 99.8 1.9E-19 4.2E-24 168.9 3.6 158 137-309 5-193 (280)
186 PRK15079 oligopeptide ABC tran 99.8 2E-19 4.4E-24 173.1 3.6 145 147-309 34-209 (331)
187 PRK13651 cobalt transporter AT 99.8 2.7E-19 5.8E-24 170.4 4.5 158 136-309 4-213 (305)
188 PRK10762 D-ribose transporter 99.8 2.5E-19 5.5E-24 181.1 4.5 157 136-309 6-189 (501)
189 PRK15056 manganese/iron transp 99.8 1.4E-19 3.1E-24 169.3 2.5 154 135-309 7-190 (272)
190 PRK10771 thiQ thiamine transpo 99.8 2.6E-19 5.7E-24 163.4 4.1 151 137-309 4-177 (232)
191 PRK13642 cbiO cobalt transport 99.8 1.3E-19 2.8E-24 170.1 2.1 155 136-309 6-188 (277)
192 cd03251 ABCC_MsbA MsbA is an e 99.8 2.3E-19 4.9E-24 163.7 3.6 153 137-307 3-184 (234)
193 PRK15439 autoinducer 2 ABC tra 99.8 8.2E-20 1.8E-24 185.1 0.7 158 135-309 12-188 (510)
194 cd03244 ABCC_MRP_domain2 Domai 99.8 4E-19 8.8E-24 160.7 5.0 155 135-307 3-185 (221)
195 TIGR01842 type_I_sec_PrtD type 99.8 2.6E-19 5.6E-24 182.7 4.1 155 135-307 317-500 (544)
196 PRK13634 cbiO cobalt transport 99.8 3E-19 6.5E-24 168.8 4.3 157 136-309 4-193 (290)
197 PRK10522 multidrug transporter 99.8 1.9E-19 4.1E-24 183.9 3.1 143 134-294 322-476 (547)
198 PRK09984 phosphonate/organopho 99.8 1.6E-19 3.4E-24 167.9 2.3 161 136-309 6-200 (262)
199 PRK14273 phosphate ABC transpo 99.8 4.4E-19 9.5E-24 164.1 4.9 158 135-308 8-197 (254)
200 cd03300 ABC_PotA_N PotA is an 99.8 2.8E-19 6E-24 163.4 3.4 152 137-309 3-178 (232)
201 PRK10982 galactose/methyl gala 99.8 3.9E-19 8.6E-24 179.2 4.9 155 138-309 2-182 (491)
202 PRK14267 phosphate ABC transpo 99.8 4.4E-19 9.5E-24 163.9 4.7 155 136-308 6-196 (253)
203 PRK09580 sufC cysteine desulfu 99.8 7.5E-19 1.6E-23 161.6 6.2 156 137-309 4-193 (248)
204 PRK14242 phosphate transporter 99.8 3.8E-19 8.1E-24 164.3 4.1 157 136-308 8-196 (253)
205 PRK11308 dppF dipeptide transp 99.8 3.7E-19 8E-24 171.1 4.1 145 147-309 28-202 (327)
206 TIGR01846 type_I_sec_HlyB type 99.8 2.4E-19 5.1E-24 187.9 3.0 142 135-294 456-620 (694)
207 cd03232 ABC_PDR_domain2 The pl 99.8 3.9E-19 8.4E-24 158.1 3.9 139 136-309 5-156 (192)
208 cd03253 ABCC_ATM1_transporter 99.8 2.8E-19 6.1E-24 163.3 3.0 154 137-308 3-184 (236)
209 PRK14269 phosphate ABC transpo 99.8 1.9E-19 4.2E-24 165.8 1.9 154 137-308 5-189 (246)
210 PRK13639 cbiO cobalt transport 99.8 1.2E-19 2.6E-24 170.2 0.5 154 137-309 4-185 (275)
211 PRK13640 cbiO cobalt transport 99.8 1.8E-19 3.9E-24 169.6 1.7 153 136-309 7-191 (282)
212 PRK14256 phosphate ABC transpo 99.8 6.4E-19 1.4E-23 162.8 5.3 158 135-308 5-195 (252)
213 PRK13549 xylose transporter AT 99.8 4.3E-19 9.3E-24 179.7 4.4 157 136-309 7-191 (506)
214 cd03222 ABC_RNaseL_inhibitor T 99.8 1.2E-18 2.6E-23 153.7 6.6 109 137-308 3-118 (177)
215 PRK10938 putative molybdenum t 99.8 1.8E-19 4E-24 181.5 1.6 153 136-309 5-183 (490)
216 TIGR01192 chvA glucan exporter 99.8 4.2E-19 9.1E-24 182.8 4.2 142 135-294 335-498 (585)
217 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 3.6E-19 7.9E-24 162.9 3.3 154 137-308 3-186 (238)
218 COG4152 ABC-type uncharacteriz 99.7 1.6E-19 3.4E-24 163.9 0.8 154 136-312 4-181 (300)
219 PRK10789 putative multidrug tr 99.7 3.7E-19 8E-24 182.6 3.6 142 135-294 314-478 (569)
220 PRK13547 hmuV hemin importer A 99.7 2.1E-19 4.6E-24 168.5 1.6 156 136-309 3-202 (272)
221 PRK13645 cbiO cobalt transport 99.7 2.8E-19 6.1E-24 168.7 2.4 161 135-309 7-198 (289)
222 TIGR02323 CP_lyasePhnK phospho 99.7 4.7E-19 1E-23 163.7 3.7 159 136-308 5-195 (253)
223 cd01849 YlqF_related_GTPase Yl 99.7 2.9E-17 6.2E-22 141.1 14.5 135 78-243 1-155 (155)
224 TIGR02142 modC_ABC molybdenum 99.7 4.1E-19 9E-24 172.4 3.3 151 140-309 5-179 (354)
225 TIGR00968 3a0106s01 sulfate AB 99.7 8.9E-19 1.9E-23 160.6 5.2 152 137-309 3-178 (237)
226 TIGR00957 MRP_assoc_pro multi 99.7 5E-19 1.1E-23 198.8 4.3 139 134-294 1284-1448(1522)
227 cd03248 ABCC_TAP TAP, the Tran 99.7 2E-19 4.2E-24 163.4 0.8 156 135-308 12-197 (226)
228 PRK15093 antimicrobial peptide 99.7 2.7E-19 5.9E-24 172.1 1.8 156 137-309 6-206 (330)
229 PRK10070 glycine betaine trans 99.7 1.7E-19 3.7E-24 177.5 0.3 152 140-308 34-211 (400)
230 PTZ00243 ABC transporter; Prov 99.7 5.9E-19 1.3E-23 198.2 4.5 139 134-294 1308-1473(1560)
231 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.2E-18 2.6E-23 148.4 5.1 107 137-307 3-116 (144)
232 PRK14259 phosphate ABC transpo 99.7 8.2E-19 1.8E-23 164.0 4.2 158 135-308 14-201 (269)
233 PRK14241 phosphate transporter 99.7 6.6E-19 1.4E-23 163.3 3.5 158 135-308 5-195 (258)
234 COG3845 ABC-type uncharacteriz 99.7 1.1E-18 2.3E-23 171.5 5.1 159 137-312 7-191 (501)
235 cd03223 ABCD_peroxisomal_ALDP 99.7 1E-18 2.2E-23 152.0 4.4 127 137-307 3-137 (166)
236 PRK11144 modC molybdate transp 99.7 5.4E-19 1.2E-23 171.5 2.7 152 139-309 5-176 (352)
237 PRK11288 araG L-arabinose tran 99.7 2.7E-19 5.9E-24 180.9 0.7 157 136-309 6-188 (501)
238 cd03289 ABCC_CFTR2 The CFTR su 99.7 6E-19 1.3E-23 165.7 2.9 141 135-294 3-165 (275)
239 cd03288 ABCC_SUR2 The SUR doma 99.7 3.5E-19 7.7E-24 165.3 1.3 155 135-307 20-202 (257)
240 cd03234 ABCG_White The White s 99.7 4E-19 8.7E-24 161.6 1.6 153 137-310 6-192 (226)
241 PRK14248 phosphate ABC transpo 99.7 1.2E-18 2.7E-23 162.5 4.8 158 135-308 22-211 (268)
242 PRK14261 phosphate ABC transpo 99.7 1.6E-18 3.4E-23 160.3 5.4 157 136-308 8-196 (253)
243 PRK14240 phosphate transporter 99.7 1.5E-18 3.3E-23 160.0 5.2 157 135-308 4-193 (250)
244 COG4987 CydC ABC-type transpor 99.7 4.6E-19 9.9E-24 175.5 1.8 142 135-294 337-501 (573)
245 PRK14237 phosphate transporter 99.7 1.2E-18 2.7E-23 162.6 4.4 158 135-308 21-210 (267)
246 PRK14271 phosphate ABC transpo 99.7 1.2E-18 2.5E-23 163.7 4.1 157 135-308 22-210 (276)
247 COG1123 ATPase components of v 99.7 2.3E-18 4.9E-23 172.7 6.4 145 147-310 304-478 (539)
248 cd03267 ABC_NatA_like Similar 99.7 1.9E-18 4.1E-23 158.5 5.4 148 142-309 29-201 (236)
249 PRK14249 phosphate ABC transpo 99.7 1.9E-18 4E-23 159.6 5.4 155 136-307 6-193 (251)
250 cd03297 ABC_ModC_molybdenum_tr 99.7 1.1E-18 2.4E-23 157.3 3.7 154 139-309 5-179 (214)
251 PRK14272 phosphate ABC transpo 99.7 1.3E-18 2.9E-23 160.5 4.2 157 136-308 6-195 (252)
252 PRK10418 nikD nickel transport 99.7 2.4E-18 5.2E-23 159.3 5.8 153 135-309 5-188 (254)
253 CHL00131 ycf16 sulfate ABC tra 99.7 7.2E-19 1.6E-23 162.2 2.3 160 135-309 8-199 (252)
254 PRK09473 oppD oligopeptide tra 99.7 4.8E-19 1E-23 170.5 1.1 157 136-309 14-209 (330)
255 PRK10419 nikE nickel transport 99.7 2.7E-18 5.9E-23 160.4 5.9 158 137-309 6-199 (268)
256 PRK14268 phosphate ABC transpo 99.7 6E-19 1.3E-23 163.7 1.4 157 135-308 13-201 (258)
257 PRK13541 cytochrome c biogenes 99.7 2.9E-19 6.2E-24 159.1 -0.8 148 137-307 4-169 (195)
258 COG4559 ABC-type hemin transpo 99.7 8.3E-19 1.8E-23 156.4 2.1 142 137-295 4-169 (259)
259 cd03250 ABCC_MRP_domain1 Domai 99.7 1.7E-18 3.7E-23 155.0 4.1 128 137-295 3-155 (204)
260 PRK14235 phosphate transporter 99.7 2.3E-18 5.1E-23 160.7 5.1 158 135-308 20-210 (267)
261 TIGR03415 ABC_choXWV_ATP choli 99.7 5E-19 1.1E-23 173.2 0.4 152 139-308 29-211 (382)
262 COG4555 NatA ABC-type Na+ tran 99.7 1.6E-18 3.4E-23 153.5 3.5 138 138-295 5-161 (245)
263 PRK09544 znuC high-affinity zi 99.7 1.6E-18 3.6E-23 160.6 3.8 142 136-309 6-168 (251)
264 COG1129 MglA ABC-type sugar tr 99.7 2.2E-18 4.9E-23 171.6 4.8 159 136-311 10-195 (500)
265 PRK14251 phosphate ABC transpo 99.7 2.3E-18 5E-23 158.9 4.6 156 136-307 6-193 (251)
266 COG4618 ArpD ABC-type protease 99.7 1.7E-18 3.7E-23 170.4 3.7 132 146-295 348-500 (580)
267 cd03290 ABCC_SUR1_N The SUR do 99.7 3.6E-18 7.9E-23 154.4 5.7 142 138-294 4-167 (218)
268 cd03299 ABC_ModC_like Archeal 99.7 1.5E-18 3.2E-23 159.0 3.1 151 137-309 3-177 (235)
269 TIGR02633 xylG D-xylose ABC tr 99.7 1.8E-18 3.9E-23 174.7 3.9 156 137-309 4-189 (500)
270 PRK14274 phosphate ABC transpo 99.7 1.8E-18 3.9E-23 160.5 3.6 158 135-308 13-202 (259)
271 PRK14257 phosphate ABC transpo 99.7 2.2E-18 4.8E-23 165.8 4.3 157 135-308 81-272 (329)
272 PRK14243 phosphate transporter 99.7 3.6E-18 7.8E-23 159.2 5.4 158 135-308 11-198 (264)
273 PRK14238 phosphate transporter 99.7 2E-18 4.3E-23 161.6 3.7 157 135-308 25-214 (271)
274 PRK14275 phosphate ABC transpo 99.7 2E-18 4.3E-23 162.9 3.7 158 135-308 40-229 (286)
275 PRK14239 phosphate transporter 99.7 3.1E-18 6.7E-23 158.0 4.8 157 136-308 7-195 (252)
276 PRK14254 phosphate ABC transpo 99.7 5E-18 1.1E-22 160.1 6.1 157 136-308 41-227 (285)
277 PRK14263 phosphate ABC transpo 99.7 4.7E-18 1E-22 158.3 5.8 156 137-308 11-196 (261)
278 PRK14245 phosphate ABC transpo 99.7 2E-18 4.4E-23 159.2 3.3 160 136-308 5-193 (250)
279 COG0396 sufC Cysteine desulfur 99.7 4.9E-18 1.1E-22 153.0 5.6 156 136-310 5-193 (251)
280 PRK14270 phosphate ABC transpo 99.7 3.4E-18 7.3E-23 157.9 4.6 155 137-308 7-194 (251)
281 TIGR02324 CP_lyasePhnL phospho 99.7 2.9E-18 6.4E-23 155.5 4.0 159 137-309 4-197 (224)
282 PRK14253 phosphate ABC transpo 99.7 2.9E-18 6.4E-23 158.0 4.0 154 136-308 5-192 (249)
283 PF00005 ABC_tran: ABC transpo 99.7 6.1E-20 1.3E-24 153.5 -6.7 127 151-295 2-136 (137)
284 COG4619 ABC-type uncharacteriz 99.7 1.2E-18 2.6E-23 150.4 1.2 132 145-294 14-160 (223)
285 PRK14262 phosphate ABC transpo 99.7 3.6E-18 7.8E-23 157.5 4.2 157 136-308 5-193 (250)
286 COG4148 ModC ABC-type molybdat 99.7 7.9E-18 1.7E-22 155.4 6.3 142 153-311 17-178 (352)
287 COG5265 ATM1 ABC-type transpor 99.7 1.4E-18 3E-23 167.8 1.3 135 135-294 263-426 (497)
288 cd00267 ABC_ATPase ABC (ATP-bi 99.7 6.2E-18 1.3E-22 145.3 5.2 119 138-309 3-128 (157)
289 PRK14260 phosphate ABC transpo 99.7 3.4E-18 7.3E-23 158.8 3.8 158 135-308 8-197 (259)
290 TIGR01184 ntrCD nitrate transp 99.7 3.5E-18 7.6E-23 156.1 3.8 136 151-309 2-162 (230)
291 COG4167 SapF ABC-type antimicr 99.7 8E-18 1.7E-22 147.2 5.3 127 146-293 25-175 (267)
292 PRK14236 phosphate transporter 99.7 5.3E-18 1.1E-22 158.7 4.3 158 135-308 26-215 (272)
293 PRK14246 phosphate ABC transpo 99.7 6.2E-18 1.3E-22 157.2 4.7 156 135-308 11-200 (257)
294 PRK14266 phosphate ABC transpo 99.7 4.8E-18 1E-22 156.7 3.9 157 136-308 5-193 (250)
295 PRK14255 phosphate ABC transpo 99.7 6.7E-18 1.5E-22 155.9 4.7 157 136-308 7-195 (252)
296 PRK09700 D-allose transporter 99.7 1.6E-18 3.4E-23 175.6 0.6 145 148-309 277-457 (510)
297 PRK10261 glutathione transport 99.7 3.8E-18 8.3E-23 176.9 3.2 155 137-309 316-511 (623)
298 COG4136 ABC-type uncharacteriz 99.7 5.8E-18 1.3E-22 143.8 3.5 139 138-299 6-167 (213)
299 COG0444 DppD ABC-type dipeptid 99.7 4.5E-18 9.7E-23 160.2 2.9 156 137-309 4-201 (316)
300 PRK14258 phosphate ABC transpo 99.7 9.3E-18 2E-22 156.1 4.9 159 135-309 8-198 (261)
301 PRK13549 xylose transporter AT 99.7 1.9E-18 4.1E-23 175.0 0.2 157 137-310 262-454 (506)
302 PRK14265 phosphate ABC transpo 99.7 6E-18 1.3E-22 158.7 3.3 158 135-308 21-208 (274)
303 PRK14244 phosphate ABC transpo 99.7 1.6E-17 3.5E-22 153.4 6.0 155 137-307 8-195 (251)
304 TIGR02770 nickel_nikD nickel i 99.7 1.4E-17 3E-22 152.0 5.2 140 150-309 2-173 (230)
305 TIGR03596 GTPase_YlqF ribosome 99.7 2.9E-16 6.2E-21 147.6 14.1 145 71-249 16-179 (276)
306 PRK15134 microcin C ABC transp 99.7 6.1E-18 1.3E-22 172.1 2.7 158 136-309 277-473 (529)
307 COG1101 PhnK ABC-type uncharac 99.7 6.1E-18 1.3E-22 151.1 2.3 150 145-312 17-199 (263)
308 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 8.4E-18 1.8E-22 153.1 3.3 149 135-309 23-190 (224)
309 TIGR02633 xylG D-xylose ABC tr 99.7 8.7E-18 1.9E-22 169.8 3.5 156 138-310 261-452 (500)
310 TIGR01271 CFTR_protein cystic 99.7 1.3E-17 2.8E-22 187.1 5.1 137 135-294 1218-1380(1490)
311 PRK15134 microcin C ABC transp 99.7 1.5E-17 3.3E-22 169.2 5.0 159 137-309 8-204 (529)
312 COG4161 ArtP ABC-type arginine 99.7 1.7E-18 3.6E-23 148.8 -1.9 159 136-311 4-191 (242)
313 PRK03695 vitamin B12-transport 99.7 5.6E-18 1.2E-22 156.5 1.3 142 149-309 11-181 (248)
314 PRK14264 phosphate ABC transpo 99.7 1.3E-17 2.8E-22 158.8 3.7 159 135-309 46-248 (305)
315 cd01859 MJ1464 MJ1464. This f 99.7 7.3E-16 1.6E-20 132.0 13.9 143 69-243 5-156 (156)
316 PTZ00265 multidrug resistance 99.7 1E-17 2.3E-22 187.1 2.8 83 134-233 382-469 (1466)
317 TIGR03269 met_CoM_red_A2 methy 99.7 8.9E-18 1.9E-22 170.6 1.1 159 137-309 3-216 (520)
318 PRK14252 phosphate ABC transpo 99.7 6E-18 1.3E-22 157.6 -0.2 160 135-308 17-208 (265)
319 cd01856 YlqF YlqF. Proteins o 99.7 8E-16 1.7E-20 134.3 13.2 140 71-244 14-171 (171)
320 PRK09563 rbgA GTPase YlqF; Rev 99.7 1.9E-15 4.1E-20 142.9 16.0 144 71-248 19-181 (287)
321 PRK10938 putative molybdenum t 99.7 1.5E-17 3.2E-22 167.7 1.8 153 138-310 264-450 (490)
322 COG4608 AppF ABC-type oligopep 99.7 1E-16 2.3E-21 148.0 7.1 126 147-311 26-159 (268)
323 TIGR03269 met_CoM_red_A2 methy 99.7 1.2E-17 2.6E-22 169.7 0.9 157 137-309 282-475 (520)
324 PRK10762 D-ribose transporter 99.7 1E-17 2.2E-22 169.5 0.1 145 148-309 266-443 (501)
325 PLN03211 ABC transporter G-25; 99.7 4.9E-17 1.1E-21 169.5 4.6 150 139-310 73-255 (659)
326 cd03237 ABC_RNaseL_inhibitor_d 99.7 9.4E-17 2E-21 148.5 5.6 128 149-309 9-163 (246)
327 COG1123 ATPase components of v 99.6 3.1E-17 6.7E-22 164.6 2.2 155 137-310 8-203 (539)
328 PRK10261 glutathione transport 99.6 3.8E-17 8.3E-22 169.5 2.8 158 136-309 14-216 (623)
329 cd03236 ABC_RNaseL_inhibitor_d 99.6 2.6E-17 5.6E-22 153.0 1.4 154 139-309 5-187 (255)
330 COG1134 TagH ABC-type polysacc 99.6 1E-16 2.2E-21 145.8 4.9 137 144-307 37-193 (249)
331 PRK15064 ABC transporter ATP-b 99.6 5.1E-17 1.1E-21 165.4 3.2 58 137-206 4-62 (530)
332 PRK11288 araG L-arabinose tran 99.6 1.7E-17 3.6E-22 167.9 -0.5 146 148-310 267-445 (501)
333 TIGR03771 anch_rpt_ABC anchore 99.6 5.9E-17 1.3E-21 147.3 2.8 129 158-309 5-161 (223)
334 cd03291 ABCC_CFTR1 The CFTR su 99.6 5.7E-17 1.2E-21 152.9 2.5 127 135-294 40-186 (282)
335 PRK10982 galactose/methyl gala 99.6 1.3E-16 2.7E-21 161.1 5.2 147 147-310 261-440 (491)
336 PRK15064 ABC transporter ATP-b 99.6 5.2E-17 1.1E-21 165.4 2.4 141 137-306 322-483 (530)
337 PRK11819 putative ABC transpor 99.6 7E-17 1.5E-21 165.4 2.4 143 135-306 7-208 (556)
338 TIGR01257 rim_protein retinal- 99.6 4.9E-17 1.1E-21 184.1 1.0 153 136-310 1939-2119(2272)
339 PRK10535 macrolide transporter 99.6 1.1E-16 2.5E-21 166.6 3.5 159 136-309 6-192 (648)
340 COG1119 ModF ABC-type molybden 99.6 1.4E-16 3E-21 145.0 3.4 158 135-309 32-219 (257)
341 cd01855 YqeH YqeH. YqeH is an 99.6 4.5E-15 9.7E-20 131.4 12.8 146 73-243 31-190 (190)
342 COG4586 ABC-type uncharacteriz 99.6 1.8E-16 3.9E-21 146.0 3.2 146 147-311 37-206 (325)
343 TIGR01257 rim_protein retinal- 99.6 7.8E-17 1.7E-21 182.5 0.9 151 135-307 929-1107(2272)
344 PRK15439 autoinducer 2 ABC tra 99.6 4.9E-17 1.1E-21 164.9 -0.7 144 149-309 278-451 (510)
345 TIGR01187 potA spermidine/putr 99.6 1.4E-16 3E-21 153.1 2.2 123 164-309 1-148 (325)
346 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.8E-16 4E-21 162.2 3.2 130 136-294 6-188 (552)
347 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 2.1E-16 4.5E-21 161.8 3.3 142 137-307 325-489 (552)
348 COG1161 Predicted GTPases [Gen 99.6 6.5E-15 1.4E-19 141.4 13.2 142 73-248 31-192 (322)
349 cd04178 Nucleostemin_like Nucl 99.6 2E-14 4.3E-19 126.2 15.0 136 78-243 1-172 (172)
350 PRK13409 putative ATPase RIL; 99.6 2.5E-16 5.5E-21 162.2 2.9 135 140-309 346-501 (590)
351 PRK11819 putative ABC transpor 99.6 2.7E-16 5.9E-21 161.1 2.8 139 137-307 327-491 (556)
352 PRK11147 ABC transporter ATPas 99.6 3.2E-16 6.9E-21 162.9 3.1 140 138-306 323-485 (635)
353 KOG0054 Multidrug resistance-a 99.6 5E-16 1.1E-20 169.5 4.7 150 135-306 1139-1320(1381)
354 TIGR00954 3a01203 Peroxysomal 99.6 3.9E-16 8.5E-21 162.9 3.6 131 135-294 452-609 (659)
355 PRK13546 teichoic acids export 99.6 7.3E-16 1.6E-20 144.0 4.3 134 147-308 37-190 (264)
356 KOG1424 Predicted GTP-binding 99.6 7E-15 1.5E-19 144.9 11.1 163 55-247 150-373 (562)
357 PRK13545 tagH teichoic acids e 99.6 3.7E-16 8E-21 157.3 2.1 147 136-309 23-191 (549)
358 PRK10636 putative ABC transpor 99.6 8.1E-16 1.8E-20 160.0 4.3 141 138-307 316-476 (638)
359 cd03238 ABC_UvrA The excision 99.6 4.7E-16 1E-20 137.0 2.0 120 146-308 7-136 (176)
360 PRK10636 putative ABC transpor 99.6 1.6E-15 3.4E-20 157.9 5.6 60 136-207 3-63 (638)
361 PLN03073 ABC transporter F fam 99.6 7.1E-16 1.5E-20 162.0 2.6 130 137-295 511-655 (718)
362 COG4172 ABC-type uncharacteriz 99.6 1.5E-15 3.2E-20 146.4 4.5 128 147-295 300-454 (534)
363 PRK13409 putative ATPase RIL; 99.6 2.2E-16 4.8E-21 162.6 -1.5 153 140-309 79-260 (590)
364 PRK15177 Vi polysaccharide exp 99.6 7.4E-16 1.6E-20 139.4 1.6 119 149-294 2-131 (213)
365 COG4615 PvdE ABC-type sideroph 99.6 1.5E-16 3.3E-21 152.7 -3.1 162 132-313 320-501 (546)
366 TIGR00955 3a01204 The Eye Pigm 99.6 1.7E-15 3.6E-20 157.1 3.9 143 145-308 36-213 (617)
367 COG4107 PhnK ABC-type phosphon 99.6 1.9E-15 4.1E-20 131.5 3.4 144 137-294 9-178 (258)
368 TIGR00956 3a01205 Pleiotropic 99.5 1.7E-15 3.7E-20 169.1 3.8 152 137-310 762-951 (1394)
369 COG4674 Uncharacterized ABC-ty 99.5 3.5E-16 7.6E-21 138.1 -1.6 141 137-294 8-174 (249)
370 PLN03130 ABC transporter C fam 99.5 1.3E-15 2.8E-20 171.9 1.6 129 134-294 614-767 (1622)
371 PLN03232 ABC transporter C fam 99.5 1.7E-15 3.6E-20 170.3 2.0 129 135-294 615-767 (1495)
372 PRK13796 GTPase YqeH; Provisio 99.5 2.3E-13 4.9E-18 132.8 16.0 154 79-261 72-240 (365)
373 TIGR03597 GTPase_YqeH ribosome 99.5 2.3E-13 5E-18 132.6 15.8 143 75-246 62-217 (360)
374 PRK11147 ABC transporter ATPas 99.5 1E-15 2.2E-20 159.1 -1.1 60 136-207 5-65 (635)
375 TIGR00957 MRP_assoc_pro multi 99.5 4E-15 8.6E-20 167.6 2.7 128 135-294 637-787 (1522)
376 COG0488 Uup ATPase components 99.5 4.1E-15 8.9E-20 150.8 0.8 130 136-294 5-180 (530)
377 TIGR01271 CFTR_protein cystic 99.5 1.5E-14 3.2E-19 162.6 5.1 117 147-294 439-575 (1490)
378 COG4172 ABC-type uncharacteriz 99.5 1E-14 2.2E-19 140.7 3.1 157 137-310 9-206 (534)
379 TIGR00956 3a01205 Pleiotropic 99.5 4.6E-15 9.9E-20 165.7 0.6 149 146-309 73-257 (1394)
380 COG0488 Uup ATPase components 99.5 2.1E-14 4.6E-19 145.6 5.1 125 139-295 326-467 (530)
381 PLN03140 ABC transporter G fam 99.5 1.2E-14 2.6E-19 162.5 3.1 143 146-309 177-384 (1470)
382 COG4133 CcmA ABC-type transpor 99.5 7.1E-15 1.5E-19 129.0 0.3 149 139-309 7-178 (209)
383 PLN03140 ABC transporter G fam 99.5 2.1E-14 4.5E-19 160.6 3.4 143 147-310 893-1068(1470)
384 KOG0061 Transporter, ABC super 99.5 2.4E-14 5.2E-19 148.1 3.3 149 146-312 42-221 (613)
385 PTZ00243 ABC transporter; Prov 99.4 5.2E-14 1.1E-18 158.6 2.3 121 144-295 670-810 (1560)
386 COG4778 PhnL ABC-type phosphon 99.4 1.8E-14 3.8E-19 125.0 -1.7 144 148-311 25-202 (235)
387 cd03278 ABC_SMC_barmotin Barmo 99.4 2E-13 4.4E-18 122.2 4.0 131 152-308 15-164 (197)
388 PLN03073 ABC transporter F fam 99.4 4.3E-14 9.3E-19 148.6 -1.5 65 135-208 178-243 (718)
389 KOG2484 GTPase [General functi 99.4 2.4E-12 5.1E-17 123.9 9.6 149 71-249 141-313 (435)
390 COG1160 Predicted GTPases [Gen 99.4 6E-12 1.3E-16 123.5 12.2 166 64-265 71-260 (444)
391 KOG0054 Multidrug resistance-a 99.3 3.5E-13 7.6E-18 147.5 3.7 129 136-295 520-671 (1381)
392 KOG0059 Lipid exporter ABCA1 a 99.3 2.3E-12 5E-17 138.6 6.2 157 138-311 568-748 (885)
393 KOG0066 eIF2-interacting prote 99.3 2.1E-12 4.7E-17 125.7 5.2 129 148-307 601-747 (807)
394 COG4178 ABC-type uncharacteriz 99.3 1.3E-12 2.8E-17 133.0 3.1 143 135-306 393-560 (604)
395 KOG2423 Nucleolar GTPase [Gene 99.3 1.4E-11 3E-16 118.5 8.1 146 72-247 209-366 (572)
396 cd03272 ABC_SMC3_euk Eukaryoti 99.2 5.3E-12 1.2E-16 115.7 4.3 35 143-181 11-45 (243)
397 COG4138 BtuD ABC-type cobalami 99.2 3.2E-12 7E-17 111.5 2.1 136 152-311 17-182 (248)
398 cd03279 ABC_sbcCD SbcCD and ot 99.2 2.8E-11 6E-16 109.4 5.4 135 158-309 27-181 (213)
399 cd03270 ABC_UvrA_I The excisio 99.2 1.6E-12 3.5E-17 118.6 -3.3 35 142-176 3-38 (226)
400 KOG0060 Long-chain acyl-CoA tr 99.2 1.8E-11 3.8E-16 122.7 3.6 131 137-293 436-596 (659)
401 PRK00093 GTP-binding protein D 99.1 6.5E-10 1.4E-14 110.6 14.0 105 72-182 76-196 (435)
402 COG1245 Predicted ATPase, RNas 99.1 1.7E-11 3.7E-16 120.1 1.3 124 158-313 366-508 (591)
403 TIGR03594 GTPase_EngA ribosome 99.1 9.7E-10 2.1E-14 109.0 13.4 105 72-182 74-195 (429)
404 KOG2485 Conserved ATP/GTP bind 99.1 4.1E-10 8.8E-15 105.8 9.4 149 73-250 43-213 (335)
405 cd04466 S1_YloQ_GTPase S1_YloQ 99.1 2.8E-10 6E-15 84.3 6.7 68 1-71 1-68 (68)
406 PRK03003 GTP-binding protein D 99.1 1.1E-09 2.3E-14 110.5 12.3 104 73-182 114-234 (472)
407 KOG0065 Pleiotropic drug resis 99.1 1.2E-10 2.6E-15 126.0 5.2 149 145-312 802-981 (1391)
408 cd03240 ABC_Rad50 The catalyti 99.0 5.2E-10 1.1E-14 100.6 8.0 125 160-309 23-170 (204)
409 KOG0927 Predicted transporter 99.0 1.3E-10 2.9E-15 115.8 3.7 125 139-294 394-536 (614)
410 cd03273 ABC_SMC2_euk Eukaryoti 99.0 8.3E-10 1.8E-14 102.1 7.7 61 158-233 24-86 (251)
411 KOG0064 Peroxisomal long-chain 99.0 2.4E-10 5.3E-15 113.6 3.9 115 149-292 497-637 (728)
412 PRK09518 bifunctional cytidyla 99.0 4.4E-09 9.5E-14 111.1 12.8 104 73-182 351-473 (712)
413 COG1129 MglA ABC-type sugar tr 99.0 3.4E-10 7.4E-15 113.4 4.1 145 149-311 274-451 (500)
414 cd03274 ABC_SMC4_euk Eukaryoti 98.9 7.3E-10 1.6E-14 100.4 4.9 34 143-180 13-46 (212)
415 cd03271 ABC_UvrA_II The excisi 98.8 8.4E-10 1.8E-14 103.1 1.6 34 146-179 7-41 (261)
416 cd04451 S1_IF1 S1_IF1: Transla 98.8 1.3E-08 2.9E-13 74.8 6.3 58 1-59 3-61 (64)
417 COG0218 Predicted GTPase [Gene 98.8 1.6E-08 3.5E-13 90.1 7.8 62 159-248 24-85 (200)
418 cd00820 PEPCK_HprK Phosphoenol 98.8 2.4E-09 5.3E-14 86.8 2.1 62 148-232 3-65 (107)
419 PRK00276 infA translation init 98.7 2E-08 4.4E-13 75.7 6.2 59 1-60 9-68 (72)
420 COG2401 ABC-type ATPase fused 98.7 4.9E-09 1.1E-13 102.1 2.4 126 148-294 397-534 (593)
421 CHL00010 infA translation init 98.7 3.2E-08 6.9E-13 75.8 6.2 59 1-60 9-68 (78)
422 KOG0062 ATPase component of AB 98.7 6E-09 1.3E-13 103.6 2.0 47 135-181 81-128 (582)
423 cd03276 ABC_SMC6_euk Eukaryoti 98.7 6.6E-09 1.4E-13 93.1 2.0 43 265-307 108-159 (198)
424 TIGR02858 spore_III_AA stage I 98.7 1.6E-08 3.5E-13 94.9 4.6 106 160-308 112-217 (270)
425 COG3845 ABC-type uncharacteriz 98.6 2.2E-08 4.7E-13 99.3 4.6 147 148-311 272-453 (501)
426 COG4170 SapD ABC-type antimicr 98.6 7.1E-09 1.5E-13 93.2 1.0 155 145-312 18-209 (330)
427 cd03275 ABC_SMC1_euk Eukaryoti 98.6 5.9E-08 1.3E-12 89.7 6.8 44 265-308 154-206 (247)
428 TIGR03238 dnd_assoc_3 dnd syst 98.6 2.3E-08 5E-13 99.8 4.3 53 148-214 20-74 (504)
429 KOG0927 Predicted transporter 98.6 1.4E-08 3.1E-13 101.5 2.3 49 135-183 76-125 (614)
430 PF01926 MMR_HSR1: 50S ribosom 98.6 7.9E-08 1.7E-12 77.9 5.2 22 161-182 1-22 (116)
431 KOG0062 ATPase component of AB 98.5 2.2E-08 4.9E-13 99.6 1.3 128 149-307 379-525 (582)
432 COG1159 Era GTPase [General fu 98.5 1E-07 2.2E-12 89.6 5.5 58 160-246 7-67 (298)
433 COG1245 Predicted ATPase, RNas 98.5 2.1E-08 4.5E-13 98.7 0.6 121 158-295 99-241 (591)
434 KOG2355 Predicted ABC-type tra 98.5 2.4E-07 5.2E-12 83.2 6.1 59 138-208 17-77 (291)
435 PF02421 FeoB_N: Ferrous iron 98.4 6.7E-07 1.5E-11 77.4 6.4 57 161-245 2-59 (156)
436 cd03280 ABC_MutS2 MutS2 homolo 98.4 3.4E-07 7.3E-12 81.9 4.0 30 151-180 18-49 (200)
437 KOG0065 Pleiotropic drug resis 98.3 1.5E-06 3.2E-11 95.0 9.2 145 148-310 129-306 (1391)
438 cd01130 VirB11-like_ATPase Typ 98.3 1.2E-06 2.6E-11 77.5 7.0 48 148-207 13-61 (186)
439 KOG0063 RNAse L inhibitor, ABC 98.3 4.1E-07 8.9E-12 89.1 3.8 101 160-294 368-483 (592)
440 cd01853 Toc34_like Toc34-like 98.3 1.2E-06 2.5E-11 81.5 6.7 25 158-182 30-54 (249)
441 cd04104 p47_IIGP_like p47 (47- 98.3 1.1E-06 2.4E-11 78.3 6.0 61 161-246 3-65 (197)
442 TIGR03598 GTPase_YsxC ribosome 98.3 3.4E-06 7.3E-11 73.7 8.4 60 159-246 18-77 (179)
443 PRK00454 engB GTP-binding prot 98.3 1.5E-06 3.3E-11 76.2 6.2 59 159-245 24-82 (196)
444 TIGR00436 era GTP-binding prot 98.3 1.1E-06 2.5E-11 82.1 5.5 22 161-182 2-23 (270)
445 COG0486 ThdF Predicted GTPase 98.2 2E-06 4.3E-11 85.2 7.0 77 158-264 216-295 (454)
446 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 1.7E-06 3.7E-11 76.8 6.0 23 161-183 2-24 (196)
447 cd01876 YihA_EngB The YihA (En 98.2 1.9E-06 4.1E-11 72.4 5.8 57 162-246 2-58 (170)
448 PRK00635 excinuclease ABC subu 98.2 9.3E-07 2E-11 100.2 4.7 46 266-311 809-862 (1809)
449 KOG1191 Mitochondrial GTPase [ 98.2 2.3E-06 5E-11 85.0 6.3 61 158-247 267-330 (531)
450 PRK00349 uvrA excinuclease ABC 98.2 1.4E-06 2.9E-11 94.4 5.0 45 266-311 830-883 (943)
451 PRK00089 era GTPase Era; Revie 98.2 3.6E-06 7.8E-11 79.4 6.6 23 160-182 6-28 (292)
452 PRK15494 era GTPase Era; Provi 98.1 2.4E-06 5.2E-11 82.8 5.0 46 137-182 21-75 (339)
453 cd03239 ABC_SMC_head The struc 98.1 5.2E-06 1.1E-10 73.2 6.7 43 267-309 95-146 (178)
454 cd03277 ABC_SMC5_euk Eukaryoti 98.1 2.3E-06 5E-11 77.6 4.4 44 266-309 126-178 (213)
455 cd03227 ABC_Class2 ABC-type Cl 98.1 3.8E-06 8.3E-11 72.6 5.5 28 267-294 78-108 (162)
456 cd04164 trmE TrmE (MnmE, ThdF, 98.1 6.2E-06 1.3E-10 68.8 6.3 24 159-182 1-24 (157)
457 PF04548 AIG1: AIG1 family; I 98.0 6.8E-06 1.5E-10 74.3 5.2 23 161-183 2-24 (212)
458 PRK00300 gmk guanylate kinase; 98.0 4.7E-06 1E-10 74.3 4.1 25 158-182 4-28 (205)
459 cd04163 Era Era subfamily. Er 98.0 1.4E-05 3E-10 66.9 6.4 23 160-182 4-26 (168)
460 COG1160 Predicted GTPases [Gen 98.0 6.9E-06 1.5E-10 81.3 5.1 59 160-247 4-65 (444)
461 TIGR00991 3a0901s02IAP34 GTP-b 98.0 1.4E-05 3E-10 76.3 6.7 25 159-183 38-62 (313)
462 PRK10078 ribose 1,5-bisphospho 98.0 5.3E-06 1.1E-10 73.3 3.5 23 159-181 2-24 (186)
463 cd01898 Obg Obg subfamily. Th 98.0 1.1E-05 2.4E-10 68.8 5.1 21 161-181 2-22 (170)
464 PRK12298 obgE GTPase CgtA; Rev 97.9 1.9E-05 4.2E-10 78.0 6.0 21 161-181 161-181 (390)
465 cd04155 Arl3 Arl3 subfamily. 97.9 2.2E-05 4.7E-10 67.3 5.5 25 158-182 13-37 (173)
466 PRK04213 GTP-binding protein; 97.9 2.5E-05 5.4E-10 69.1 6.0 23 159-181 9-31 (201)
467 cd04171 SelB SelB subfamily. 97.9 2.8E-05 6.2E-10 65.5 6.1 21 161-181 2-22 (164)
468 PF10662 PduV-EutP: Ethanolami 97.9 1.8E-05 3.9E-10 67.4 4.7 23 160-182 2-24 (143)
469 PRK07721 fliI flagellum-specif 97.9 1.4E-05 3E-10 79.9 4.5 73 147-232 146-222 (438)
470 TIGR00630 uvra excinuclease AB 97.8 1.9E-05 4E-10 85.6 5.6 31 148-178 621-652 (924)
471 PRK06002 fliI flagellum-specif 97.8 6.1E-06 1.3E-10 82.4 1.8 74 147-233 153-229 (450)
472 PF13555 AAA_29: P-loop contai 97.8 9.3E-06 2E-10 59.4 2.3 24 158-181 22-45 (62)
473 KOG1423 Ras-like GTPase ERA [C 97.8 2.1E-05 4.6E-10 74.3 5.2 60 160-248 73-135 (379)
474 cd01894 EngA1 EngA1 subfamily. 97.8 1.5E-05 3.2E-10 66.7 3.8 19 163-181 1-19 (157)
475 PRK10416 signal recognition pa 97.8 1.1E-05 2.3E-10 77.7 3.2 41 158-210 113-153 (318)
476 TIGR00993 3a0901s04IAP86 chlor 97.8 4.8E-05 1E-09 78.9 8.1 23 160-182 119-141 (763)
477 cd03241 ABC_RecN RecN ATPase i 97.8 3.8E-06 8.2E-11 79.0 -0.0 43 265-307 169-220 (276)
478 cd01881 Obg_like The Obg-like 97.8 1.4E-05 3.1E-10 68.3 3.6 19 164-182 1-19 (176)
479 KOG0066 eIF2-interacting prote 97.8 6.4E-06 1.4E-10 81.2 1.4 49 135-183 265-314 (807)
480 cd00879 Sar1 Sar1 subfamily. 97.8 3.7E-05 8.1E-10 67.2 6.1 34 149-182 9-42 (190)
481 COG1084 Predicted GTPase [Gene 97.8 4.1E-05 8.9E-10 73.0 6.7 62 159-250 168-232 (346)
482 cd01878 HflX HflX subfamily. 97.8 2.9E-05 6.2E-10 69.0 5.4 23 160-182 42-64 (204)
483 PRK09825 idnK D-gluconate kina 97.8 1.9E-05 4.1E-10 69.5 3.8 24 158-181 2-25 (176)
484 PF00735 Septin: Septin; Inte 97.8 5.9E-05 1.3E-09 71.3 7.2 23 161-183 6-28 (281)
485 cd01897 NOG NOG1 is a nucleola 97.8 4.6E-05 1E-09 64.9 5.7 22 161-182 2-23 (168)
486 cd01850 CDC_Septin CDC/Septin. 97.8 9.2E-05 2E-09 69.8 8.2 23 161-183 6-28 (276)
487 TIGR00450 mnmE_trmE_thdF tRNA 97.8 5.1E-05 1.1E-09 76.2 6.7 25 158-182 202-226 (442)
488 PF05049 IIGP: Interferon-indu 97.7 2.6E-05 5.7E-10 76.3 4.3 23 159-181 35-57 (376)
489 cd01896 DRG The developmentall 97.7 6E-05 1.3E-09 69.2 6.2 22 161-182 2-23 (233)
490 TIGR02788 VirB11 P-type DNA tr 97.7 4.4E-05 9.5E-10 73.0 5.4 43 151-205 135-178 (308)
491 cd04159 Arl10_like Arl10-like 97.7 2.7E-05 5.9E-10 64.7 3.5 21 162-182 2-22 (159)
492 PRK09601 GTP-binding protein Y 97.7 0.00026 5.6E-09 69.2 10.8 24 160-183 3-26 (364)
493 PRK09862 putative ATP-dependen 97.7 3.6E-05 7.7E-10 78.3 4.9 62 139-212 189-251 (506)
494 TIGR00008 infA translation ini 97.7 8.5E-05 1.8E-09 55.2 5.5 59 1-59 7-65 (68)
495 PRK07196 fliI flagellum-specif 97.7 1.9E-05 4.1E-10 78.8 2.4 74 147-233 143-221 (434)
496 PRK09270 nucleoside triphospha 97.7 2.6E-05 5.7E-10 71.2 3.0 32 158-201 32-63 (229)
497 cd01887 IF2_eIF5B IF2/eIF5B (i 97.7 7.3E-05 1.6E-09 63.4 5.4 21 161-181 2-22 (168)
498 cd01900 YchF YchF subfamily. 97.6 6.2E-05 1.3E-09 70.9 5.0 22 162-183 1-22 (274)
499 PTZ00258 GTP-binding protein; 97.6 9.9E-05 2.2E-09 72.8 6.6 25 158-182 20-44 (390)
500 cd01851 GBP Guanylate-binding 97.6 8.6E-05 1.9E-09 67.8 5.6 23 160-182 8-30 (224)
No 1
>COG1162 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1e-57 Score=425.84 Aligned_cols=282 Identities=39% Similarity=0.663 Sum_probs=257.1
Q ss_pred CeeEEEecCCCCceeccCC--CCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccccccccccccccc
Q 020346 1 MRVIVQQSEPSRTSDCNDK--TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD 78 (327)
|.|+|.++..|+|++..+. +++.+.|..||+|++....++|||||.++... ..|+|++++||+|.|.||.+||+|
T Consensus 5 ~~g~v~~~~~g~y~v~~~~~~~~~~~~~~~r~~lr~~~~~~vVGD~V~~~~~~---~~g~I~~i~~Rkn~L~Rp~v~n~d 81 (301)
T COG1162 5 KRGRVVKVDAGFYGVRLEEEVDGEVYRCRARGNLRKKDLKPVVGDRVVFEDEN---NNGVIEKILPRKNVLIRPPVANND 81 (301)
T ss_pred cCcEEEEeeCCEEEEEEccccccceeeeeeecceeccCccccccCeEEEecCC---CcceEEEEecccCceeCCcccccc
Confidence 5789999999999776442 36689999999999988999999999998643 228999999999999999999999
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHH--HHHhhhhhcCCceeeccCcchhhHHHHHhh
Q 020346 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN--TWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 79 ~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~ 156 (327)
++++|+++..|.+++.+|+|||+.|++.++.|++|+||+||.+++... .....+.++||+++.+|..+..+++.+...
T Consensus 82 ~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~ 161 (301)
T COG1162 82 QAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAEL 161 (301)
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999876554 466778889999999999999999999999
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCe
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY 236 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~ 236 (327)
++|++++|+|+||||||||+|.|.+.. .+.|+++|.+.++|||||++..+++.+.+++
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~----------------------~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~ 219 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPEL----------------------NQKTGEISEKLGRGRHTTTHVELFPLPGGGW 219 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchh----------------------hhhhhhhcccCCCCCCccceEEEEEcCCCCE
Confidence 999999999999999999999999944 3789999999999999999999999988999
Q ss_pred EEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHHHHHH
Q 020346 237 LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIRI 309 (327)
Q Consensus 237 i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~e~~~ 309 (327)
++|||||+.+.++.+..+++...|+|+..+ ...|+|.+|+|.+||+|+|+. +++||+.|+++++|+..
T Consensus 220 iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~-----~~~CkFr~C~H~~EPgCav~~av~~g~i~~~Ry~~Y~kll~el~~ 294 (301)
T COG1162 220 IIDTPGFRSLGLAHLEPEDLVQAFPEFAEL-----ARQCKFRDCTHTHEPGCAVKAAVEEGEIAPERYENYLKLLDELSG 294 (301)
T ss_pred EEeCCCCCccCcccCCHHHHHHHhHHHHHH-----hcCCCCCCCCCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 678999999999999999965 45799999999999986
Q ss_pred hHH
Q 020346 310 REE 312 (327)
Q Consensus 310 ~~~ 312 (327)
..+
T Consensus 295 ~~~ 297 (301)
T COG1162 295 NRR 297 (301)
T ss_pred hhh
Confidence 543
No 2
>PRK12289 GTPase RsgA; Reviewed
Probab=100.00 E-value=4.2e-57 Score=436.06 Aligned_cols=298 Identities=48% Similarity=0.854 Sum_probs=262.3
Q ss_pred CeeEEEecCCCCceeccCCC-----CcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccccccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKT-----GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~a 75 (327)
|.|+|++...|+|+|..+.+ +..+.|..+|++++.+..++|||||.++..++.+..++|++|+||+|.|.||.+|
T Consensus 9 ~~g~V~~~~~~~y~V~~~~~~~~~~~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~~~a 88 (352)
T PRK12289 9 LLGTVVAVQANFYRVQLDEPQNLNPPSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPVA 88 (352)
T ss_pred ccEEEEEEECCEEEEEECCCcccCcceEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceechhhh
Confidence 68999999988888875422 2579999999998777779999999998766555679999999999999999999
Q ss_pred cccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhHHHHHh
Q 020346 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 76 nvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (327)
|+|++++|+++..|.+++..|++||..++..++|+++|+||+||+++.+...|...+..++|+++.+|+.+..+++.|..
T Consensus 89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 89 NADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLE 168 (352)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhh
Confidence 99999999999889899989999999999999999999999999987766778788888999999999999999999988
Q ss_pred hcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC
Q 020346 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (327)
Q Consensus 156 ~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~ 235 (327)
.+.+++++|+|+||||||||||.|++.. ...++.++.+.++|+|||++..+++.+.++
T Consensus 169 ~L~~ki~v~iG~SgVGKSSLIN~L~~~~----------------------~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~ 226 (352)
T PRK12289 169 QLRNKITVVAGPSGVGKSSLINRLIPDV----------------------ELRVGKVSGKLGRGRHTTRHVELFELPNGG 226 (352)
T ss_pred hhccceEEEEeCCCCCHHHHHHHHcCcc----------------------ccccccccCCCCCCCCcCceeEEEECCCCc
Confidence 8889999999999999999999999854 256778888899999999999999998788
Q ss_pred eEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHHHHHHHHHHHHHHHHhHHHhh
Q 020346 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIRIREEFQL 315 (327)
Q Consensus 236 ~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~r~~~~~~ll~e~~~~~~~~~ 315 (327)
+++|||||+.+.+ .++..++...||++..+++ ...|+|.+|+|.+||||+|+++++||++|++|++|+.......+
T Consensus 227 ~liDTPG~~~~~l-~~~~~~l~~~F~e~~~~~~---~~~CrF~dC~H~~EPgCaV~~~~~Ry~~Y~~l~~e~~~~~~~~~ 302 (352)
T PRK12289 227 LLADTPGFNQPDL-DCSPRELAHYFPEARQRLA---QGNCQFNDCLHRDEPNCAVRGDWERYEHYLEFLEEAIAQQEQLQ 302 (352)
T ss_pred EEEeCCCcccccc-ccCHHHHHhhHHHHHHhHh---hCceEccCCccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998 5788899999999988742 37899999999999999999999999999999999877655544
Q ss_pred hhhccccCCCC
Q 020346 316 RTFGTKREGDV 326 (327)
Q Consensus 316 ~~~~~~~~~~~ 326 (327)
+ +++++.++
T Consensus 303 ~--~~~~~~~~ 311 (352)
T PRK12289 303 Q--SADEESTL 311 (352)
T ss_pred c--Cccccccc
Confidence 3 55555544
No 3
>PRK12288 GTPase RsgA; Reviewed
Probab=100.00 E-value=8.3e-54 Score=412.84 Aligned_cols=277 Identities=31% Similarity=0.510 Sum_probs=244.2
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccC--CceEEeeeccccccccccc-----
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD--RRGMIENVFQRSTEILDPP----- 73 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~--~~~~i~~i~~R~~~l~r~~----- 73 (327)
|.|+|++.+.|+|+|..+ +|..+.|.++|+++ .|+|||||.++..+... ..++|++|+||+|.|.||.
T Consensus 40 ~~g~Vi~~~~~~~~v~~~-~g~~~~~~~~g~~~----~~~vGD~V~~~~~~~~~~~~~~~I~~il~R~n~L~R~~~~~~~ 114 (347)
T PRK12288 40 QEGIVISRFGQHADVEAA-DGEVHRCNIRRTIR----SLVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDGV 114 (347)
T ss_pred cceEEEEEECCEEEEEeC-CCcEEEEEecccCC----CCCCCcEEEEEeCCCcccccceEEEEEecccceEECCCccccc
Confidence 579999999888888754 77889999999884 39999999998542111 1389999999999999875
Q ss_pred ---cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcCCceeeccCcch
Q 020346 74 ---VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 74 ---~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
|||+|++++|++.. |.+++..+++||..++..++++++|+||+||.++.+ ...+...+..++++++.+|+.+.
T Consensus 115 q~iaANvD~vlIV~s~~-p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 115 KPIAANIDQIVIVSAVL-PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred ceEEEEccEEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 79999999999975 899999999999999999999999999999987542 34556667778999999999999
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
.+++.|...+.+++++|+|+||||||||||+|+|.. ...+++++.+.++|+|||++..
T Consensus 194 ~GideL~~~L~~ki~~~vG~sgVGKSTLiN~Ll~~~----------------------~~~t~~is~~~~rGrHTT~~~~ 251 (347)
T PRK12288 194 EGLEELEAALTGRISIFVGQSGVGKSSLINALLPEA----------------------EILVGDVSDNSGLGQHTTTAAR 251 (347)
T ss_pred cCHHHHHHHHhhCCEEEECCCCCCHHHHHHHhcccc----------------------ceeeccccCcCCCCcCceeeEE
Confidence 999999888889999999999999999999999954 2578889988999999999999
Q ss_pred EEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHH
Q 020346 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYY 300 (327)
Q Consensus 228 ~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~ 300 (327)
+++.+.++.++|||||+.+.++.++.+++...||++.++ .+.|+|.+|.|.+||||+|+. ++.||++|
T Consensus 252 l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~-----~~~CrF~dC~H~~EpgCaV~~Av~~g~i~~~Ry~~Y 326 (347)
T PRK12288 252 LYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDY-----LGTCKFRDCKHDDDPGCALREAVEEGKIAETRFENY 326 (347)
T ss_pred EEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHH-----hcCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHH
Confidence 999987889999999999999988889999999999998 788999999999999999965 46799999
Q ss_pred HHHHHHHHHh
Q 020346 301 FQLLDEIRIR 310 (327)
Q Consensus 301 ~~ll~e~~~~ 310 (327)
++|++|+.+.
T Consensus 327 ~~l~~e~~~~ 336 (347)
T PRK12288 327 HRILESMAEV 336 (347)
T ss_pred HHHHHHHHhh
Confidence 9999999775
No 4
>PRK00098 GTPase RsgA; Reviewed
Probab=100.00 E-value=1.8e-50 Score=383.08 Aligned_cols=280 Identities=38% Similarity=0.621 Sum_probs=245.0
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccccccccccc------
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV------ 74 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~------ 74 (327)
|+|+|++.+.|+|+|..+ +|.++.|.+||++++.+..|+|||||.++.. .++.|+|++++||+|.+.||.+
T Consensus 1 ~~g~v~~~~~~~~~v~~~-~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~--~~~~g~i~~i~~R~~~l~R~~~~~~q~i 77 (298)
T PRK00098 1 MEGLIIKALGGFYYVESE-DGQVYQCRARGKFRKKTNTPAVGDRVEFSAE--NNDEGVILEIHERKNLLVRPPIFKSKLI 77 (298)
T ss_pred CeEEEEEEECCEEEEEEC-CCCEEEEEeccccccCCCCcCCCCEEEEEEC--CCCcEEEEEEeCCCceEECCCCccccce
Confidence 899999999777777643 5779999999999876778999999999753 2467899999999999999886
Q ss_pred -ccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCc-HHHHHHHHhhhhhcCCceeeccCcchhhHHH
Q 020346 75 -ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152 (327)
Q Consensus 75 -anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 152 (327)
||+|++++|+++..|.++...+++++..+...++|+++|+||+||.+ ......+...++.++++++.+|..+..+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDE 157 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH
Confidence 99999999999988988888899999999999999999999999973 3344456666777889999999999999999
Q ss_pred HHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEcc
Q 020346 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS 232 (327)
Q Consensus 153 l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~ 232 (327)
+...++|++++|+|+||||||||+|+|+|.. .+ .++.++...++|+|||++..+++.+
T Consensus 158 L~~~l~gk~~~~~G~sgvGKStlin~l~~~~------------~~----------~~g~v~~~~~~G~htT~~~~~~~~~ 215 (298)
T PRK00098 158 LKPLLAGKVTVLAGQSGVGKSTLLNALAPDL------------EL----------KTGEISEALGRGKHTTTHVELYDLP 215 (298)
T ss_pred HHhhccCceEEEECCCCCCHHHHHHHHhCCc------------CC----------CCcceeccCCCCCcccccEEEEEcC
Confidence 9888899999999999999999999999943 23 3455666778999999999999888
Q ss_pred CCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHH
Q 020346 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLD 305 (327)
Q Consensus 233 ~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~ 305 (327)
.+++++||||++...++.++..++...|+++... ...|.|.+|.|.+||+|+|.. ++.||++|++|++
T Consensus 216 ~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~-----~~~c~f~~c~h~~ep~c~v~~a~~~g~i~~~Ry~~y~~l~~ 290 (298)
T PRK00098 216 GGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPL-----SGDCKFRNCTHLHEPGCAVKAAVEEGEIAPSRYESYLQILE 290 (298)
T ss_pred CCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHH-----hCCCCCCCCcCCCCCCChHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7889999999999999888889999999999888 678999999999999999964 5679999999999
Q ss_pred HHHHh
Q 020346 306 EIRIR 310 (327)
Q Consensus 306 e~~~~ 310 (327)
|+...
T Consensus 291 e~~~~ 295 (298)
T PRK00098 291 EIENR 295 (298)
T ss_pred HHHhc
Confidence 98663
No 5
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=100.00 E-value=1.2e-50 Score=382.41 Aligned_cols=272 Identities=41% Similarity=0.649 Sum_probs=236.5
Q ss_pred eEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccccc--------c
Q 020346 3 VIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--------V 74 (327)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~--------~ 74 (327)
|+|++.+.++|+|.+ ++..+.|.+||++++.+..|+|||||.++..+ ++.++|++++||+|.|.||. +
T Consensus 1 g~v~~~~~~~~~v~~--~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~~~~~~~i~ 76 (287)
T cd01854 1 GRVIAVHGGFYDVET--EGGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRVLPRKNLLSRPAAGGREQVIA 76 (287)
T ss_pred CEEEEEECCEEEEEE--CCeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEEECCCceEEccCCCCcceeEE
Confidence 678999977777764 36789999999998766789999999998643 45789999999999999998 9
Q ss_pred ccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhHHHHH
Q 020346 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLL 154 (327)
Q Consensus 75 anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~ 154 (327)
||+|++++|+++..|.+++..+++||..+...++|+++|+||+||.++.....+...+..++++++.+|..+..+++.+.
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELR 156 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence 99999999999998888889999999999999999999999999987654444555566688999999999999999999
Q ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC
Q 020346 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (327)
Q Consensus 155 ~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~ 234 (327)
..+++++++|+|+||||||||+|.|+| ...++.| .++...++|+|+|++..+++...+
T Consensus 157 ~~L~~k~~~~~G~sg~GKSTlin~l~~------------~~~~~~g----------~v~~~~~~g~~tT~~~~~~~~~~~ 214 (287)
T cd01854 157 EYLKGKTSVLVGQSGVGKSTLINALLP------------DLDLATG----------EISEKLGRGRHTTTHRELFPLPGG 214 (287)
T ss_pred hhhccceEEEECCCCCCHHHHHHHHhc------------hhhcccc----------ceeccCCCCCcccceEEEEEcCCC
Confidence 999999999999999999999999999 3444444 344456789999999999999777
Q ss_pred CeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHH
Q 020346 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLD 305 (327)
Q Consensus 235 ~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~ 305 (327)
++++||||+..+.+..++..++...|+++.+. ...|+|.+|+|.+||||+|+. +.+||++|++|++
T Consensus 215 ~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~-----~~~C~F~~C~H~~Ep~Cav~~av~~g~i~~~Ry~~y~~l~~ 287 (287)
T cd01854 215 GLLIDTPGFREFGLLHIDPEELAHYFPEFREL-----AGQCKFRDCTHTNEPGCAVKAAVEAGEISPERYESYLKLLE 287 (287)
T ss_pred CEEEECCCCCccCCccCCHHHHHHHhHHHHHH-----hCCCCCCCCcCCCCCCCHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 89999999999887778889999999999888 788999999999999999965 4579999999863
No 6
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=100.00 E-value=1.2e-47 Score=354.33 Aligned_cols=237 Identities=39% Similarity=0.647 Sum_probs=212.0
Q ss_pred cccCcEEEEceecccCCceEEeeeccccccccccccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCC
Q 020346 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118 (327)
Q Consensus 39 ~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~D 118 (327)
++|||||.++..+ ++.++|++|++|.+.+.|+.++|+|++++|+++..|.++...+++++..++..+.++++|+||+|
T Consensus 1 ~~vGD~V~~~~~~--~~~~~i~~i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~D 78 (245)
T TIGR00157 1 LVVGDRVVWEPGN--VVKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKID 78 (245)
T ss_pred CCCCcEEEEEecC--CCceEEEEEecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcc
Confidence 5899999998643 35689999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCcHHHH-HHHHhhhhhcCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc
Q 020346 119 LVDEEVL-NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197 (327)
Q Consensus 119 l~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p 197 (327)
|.++... ..+...+..++++++.+|+.++.+++.+...+.+++++|+|+||||||||||.|.+..
T Consensus 79 L~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~-------------- 144 (245)
T TIGR00157 79 LLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSV-------------- 144 (245)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhh--------------
Confidence 9764433 3566677778999999999999999998888889999999999999999999999954
Q ss_pred cccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccc
Q 020346 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 198 ~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
...+++++.+.++|+|||++..+++. .+++++|||||+.+.++.++.+++...||++.++ .+.|+|
T Consensus 145 --------~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~-----~~~C~f 210 (245)
T TIGR00157 145 --------KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDY-----LGECKF 210 (245)
T ss_pred --------hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCCCCCCHHHHHHhCHHHHHH-----hCCCCC
Confidence 25677888888999999999999998 5789999999999999999989999999999888 678999
Q ss_pred cccccccCCceEEcc-------cHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKG-------DWERYQYYFQLLD 305 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~ 305 (327)
.+|+|.+||||+|+. ++.||++|++|++
T Consensus 211 ~~C~H~~ep~C~v~~a~~~g~i~~~ry~~y~~~~~ 245 (245)
T TIGR00157 211 RDCLHQSEPGCAVRQAVEQGEISEWRYENYLKLIE 245 (245)
T ss_pred CCCccCCCCCChHHHHHHcCCCCHHHHHHHHHHhC
Confidence 999999999999976 4569999999863
No 7
>PRK01889 GTPase RsgA; Reviewed
Probab=100.00 E-value=1.3e-45 Score=357.56 Aligned_cols=274 Identities=30% Similarity=0.442 Sum_probs=229.6
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccc----cCCCcccCcEEEEceecccCCceEEeeeccccccccccc---
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKK----IKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--- 73 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~--- 73 (327)
|.|+|++.+.|+|+|.++ +| ++.|.++|+++. .+..++|||||.++. ++.|+|++++||+|.|.||.
T Consensus 29 ~~g~v~~~~~~~~~v~~~-~~-~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~----~~~g~I~~i~pR~~~L~R~~~~~ 102 (356)
T PRK01889 29 EPGRVVEEHRSGYVVATE-EG-EVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN----EKKARIVRLLPRRSLFSRKAAGT 102 (356)
T ss_pred ccEEEEEEECCEEEEEEC-Cc-EEEEEecchhhccccccCCCCccCcEEEEec----CCceEEEEEECCCceEEcCCCCC
Confidence 579999999788888753 44 678999999874 345699999999974 35689999999999999986
Q ss_pred -------cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 74 -------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 74 -------~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
|||+|++++|+++. |.+++.+++|||+.|+..++++++|+||+||.++.. ...+...+ ..+|+++.+|..
T Consensus 103 ~~~~q~iaANvD~vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~ 180 (356)
T PRK01889 103 RSEEQLIAANVDTVFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSAL 180 (356)
T ss_pred CccceeEEEeCCEEEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECC
Confidence 69999999999996 889999999999999999999999999999987532 22233333 568999999999
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
+..+++.|...+ +|++++|+|+||+|||||+|.|+| ...|..|+|.+++. +++|+|+
T Consensus 181 ~g~gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g------------~~~~~~G~i~~~~~----------~g~~tt~ 238 (356)
T PRK01889 181 DGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLG------------EEVQKTGAVREDDS----------KGRHTTT 238 (356)
T ss_pred CCccHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHH------------hcccceeeEEECCC----------CCcchhh
Confidence 999999999988 689999999999999999999999 77788898877543 3456666
Q ss_pred EEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHH
Q 020346 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERY 297 (327)
Q Consensus 225 ~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~ 297 (327)
+..+.+...+.+++||||+..+.+.... ..+...|+++... ...|.|.+|.|.+||+|.|+. ..+||
T Consensus 239 ~~~l~~l~~~~~l~DtpG~~~~~l~~~~-~~l~~~f~~~~~~-----~~~c~f~~c~h~~E~~c~v~~a~~~~~i~~~r~ 312 (356)
T PRK01889 239 HRELHPLPSGGLLIDTPGMRELQLWDAE-DGVEETFSDIEEL-----AAQCRFRDCAHEAEPGCAVQAAIENGELDERRL 312 (356)
T ss_pred hccEEEecCCCeecCCCchhhhcccCch-hhHHHhHHHHHHH-----HccCCCCCCCCCCCCCChHHHHHHcCCCCHHHH
Confidence 6555555556799999999998887643 6688999999888 788999999999999999964 45799
Q ss_pred HHHHHHHHHHHHh
Q 020346 298 QYYFQLLDEIRIR 310 (327)
Q Consensus 298 ~~~~~ll~e~~~~ 310 (327)
+.|++|++|+...
T Consensus 313 ~~Y~~l~~e~~~~ 325 (356)
T PRK01889 313 QSYRKLQREQAYN 325 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998653
No 8
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.98 E-value=9.8e-33 Score=238.53 Aligned_cols=153 Identities=46% Similarity=0.840 Sum_probs=120.1
Q ss_pred HHHHhhhhhcCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 126 NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 126 ~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
++|...|+++||+++.+|..+..+++.|...+++++++|+|+||||||||+|.|.+..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~---------------------- 59 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEA---------------------- 59 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----------------------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc----------------------
Confidence 3567889999999999999999999999999999999999999999999999999953
Q ss_pred ceeeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccC
Q 020346 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (327)
Q Consensus 206 g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~e 285 (327)
.+.+++++.+.++|+|||++..+++.+.+++++|||||+.+.++.++.+++...||++..+ ...|+|.+|.|.+|
T Consensus 60 ~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~-----~~~CkF~~C~H~~E 134 (161)
T PF03193_consen 60 KQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPL-----AGQCKFRDCTHIHE 134 (161)
T ss_dssp ----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHH-----TTHSSSTTTTSSSS
T ss_pred chhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccc-----cCCCCccCCCCCCC
Confidence 2678899998899999999999999988999999999999999999999999999999998 78999999999999
Q ss_pred CceEEcc-------cHHHHHHHHHHHH
Q 020346 286 PGCVVKG-------DWERYQYYFQLLD 305 (327)
Q Consensus 286 p~~~v~~-------~~~r~~~~~~ll~ 305 (327)
|+|+|+. ++.||++|++|++
T Consensus 135 p~CaV~~av~~g~i~~~Ry~~Y~~l~~ 161 (161)
T PF03193_consen 135 PGCAVKAAVENGEISPERYESYLKLLD 161 (161)
T ss_dssp TT-HHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CCChHHHHHHCCCCcHHHHHHHHHHhC
Confidence 9999965 4569999999975
No 9
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.4e-26 Score=206.51 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=126.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+..+|++.++|+++++.+ +|++++|+|||||||||||+||.+ +.+|++|+|+++|.++.....
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~------------LE~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG------------LEEPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC------------CcCCCCceEEECCEeccchhh
Confidence 3567889999999999999998 999999999999999999999999 999999999999987753321
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCC----------------ccccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ----------------PSLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~----------------~~l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
-...++.+++|+|.++. ++.++..... ..++.+.+.+.++.+|.. |||||+||
T Consensus 72 ----~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q---LSGGQqQR 144 (240)
T COG1126 72 ----ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ---LSGGQQQR 144 (240)
T ss_pred ----HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccc---cCcHHHHH
Confidence 11278889999998755 3445433321 123455566677778877 99999999
Q ss_pred ccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHhH
Q 020346 275 CSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~ 311 (327)
+++|+++ ..+|++.+.| ||+-....+.+++++.+.+
T Consensus 145 VAIARAL-aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 145 VAIARAL-AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHH-cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 9999999 8999999988 6677888888888887765
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=1.5e-25 Score=196.14 Aligned_cols=159 Identities=14% Similarity=0.213 Sum_probs=129.3
Q ss_pred CCceeeccCcchh-hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.|+.++..|...+ +|+++++.+ +|+.+-++|||||||||||++|.+ ..+||+|+|+++|.+++.++
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~------------~e~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG------------EERPTRGKILVNGHDLSRLK 70 (223)
T ss_pred eehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHh------------hhcCCCceEEECCeeccccc
Confidence 4667778886544 999999998 999999999999999999999999 78999999999999999887
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
.++ -+..++++++|+|++. .++.|+..+.... ++.+.+.+....+|.. |||||+||
T Consensus 71 ~~~--iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~---LSGGEQQR 145 (223)
T COG2884 71 GRE--IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ---LSGGEQQR 145 (223)
T ss_pred ccc--cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc---cCchHHHH
Confidence 543 4568999999999873 4667776654321 3334445556677776 99999999
Q ss_pred ccccccccccCCceEEccc------HHHHHHHHHHHHHHHHhHH
Q 020346 275 CSFNNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~~ 312 (327)
+++|+++ ++.|.+++.|+ |.-....+.+++|++..+-
T Consensus 146 vaIARAi-V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~Gt 188 (223)
T COG2884 146 VAIARAI-VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT 188 (223)
T ss_pred HHHHHHH-ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCc
Confidence 9999999 99999999884 5566667788888877654
No 11
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.4e-25 Score=211.72 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=114.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+..+|++..+++++++.+ +|+.++|+||||||||||||+|+| +.+|++|+|.|+|.+++.++
T Consensus 4 i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG------------Le~~~~G~I~i~g~~vt~l~ 71 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG------------LEEPTSGEILIDGRDVTDLP 71 (338)
T ss_pred EEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCCCC
Confidence 44677888998766899999998 899999999999999999999999 99999999999999999987
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCccc---------------cccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL---------------LKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l---------------~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
++ .++++||+|++ .+++.|+.+|..... +.+...++.+..|.. |||||+||
T Consensus 72 P~-------~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~---LSGGQrQR 141 (338)
T COG3839 72 PE-------KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ---LSGGQRQR 141 (338)
T ss_pred hh-------HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc---CChhhHHH
Confidence 64 57899999985 557778887764321 122333444444444 99999999
Q ss_pred ccccccccccCCceEEcccHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+++++|+ +.+|.+.++|+|-
T Consensus 142 VAlaRAl-Vr~P~v~L~DEPl 161 (338)
T COG3839 142 VALARAL-VRKPKVFLLDEPL 161 (338)
T ss_pred HHHHHHH-hcCCCEEEecCch
Confidence 9999999 9999999999874
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.5e-25 Score=201.08 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=106.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+..+|+...+++++++.+ +|++++|+||||||||||+|+|+| +.+|++|+|.++|+++...
T Consensus 5 ~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG------------L~~p~~G~V~~~g~~v~~p-- 70 (248)
T COG1116 5 EIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG------------LEKPTSGEVLLDGRPVTGP-- 70 (248)
T ss_pred EEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCcccCCC--
Confidence 3466778888889999999998 999999999999999999999999 9999999999999988332
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
...++|++|++.. ++.||..+.... ++.+.+.+..+.+|.. |||||+||+
T Consensus 71 --------~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~q---LSGGMrQRV 139 (248)
T COG1116 71 --------GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ---LSGGMRQRV 139 (248)
T ss_pred --------CCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccc---cChHHHHHH
Confidence 3468899998654 445665443221 2223333445566666 999999999
Q ss_pred cccccccccCCceEEcccH
Q 020346 276 SFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~ 294 (327)
+|++++ +.+|+++++|+|
T Consensus 140 aiARAL-~~~P~lLLlDEP 157 (248)
T COG1116 140 AIARAL-ATRPKLLLLDEP 157 (248)
T ss_pred HHHHHH-hcCCCEEEEcCC
Confidence 999999 999999999976
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=2.9e-25 Score=213.17 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=122.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+..+|++..+++++++.+ +|+.++|+|||||||||||++|+| |..|++|+|+++|+++..++
T Consensus 6 l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG------------fe~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG------------FEQPSSGEILLDGEDITDVP 73 (352)
T ss_pred EEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCCCC
Confidence 34678899999999999999998 999999999999999999999999 99999999999999999988
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCcc----------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS----------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~----------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
. ..+.+++|+|+. ++++.|+.+|.... ++.+.+.+.....|.. |||||+|
T Consensus 74 p-------~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q---LSGGQqQ 143 (352)
T COG3842 74 P-------EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQ---LSGGQQQ 143 (352)
T ss_pred h-------hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhh---hChHHHH
Confidence 6 467899999985 66788887776441 1122333445555555 9999999
Q ss_pred cccccccccccCCceEEcccHH---HHHHHHHHHHHHHHh
Q 020346 274 KCSFNNCLHLGEPGCVVKGDWE---RYQYYFQLLDEIRIR 310 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~~---r~~~~~~ll~e~~~~ 310 (327)
|+++|+++ +.+|+++++|+|. ....-.+|..|++..
T Consensus 144 RVALARAL-~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 144 RVALARAL-VPEPKVLLLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred HHHHHHHh-hcCcchhhhcCcccchhHHHHHHHHHHHHHH
Confidence 99999999 9999999999874 222223444454443
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.90 E-value=1.2e-24 Score=200.94 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=112.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
..+.++++|+++.+++++++.+ +|++++|+||||||||||+++|+| +.+|.+|+|+++|+++...+.
T Consensus 4 ~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g------------~l~p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 4 EVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG------------LLKPKSGEVLLDGKDIASLSP 71 (258)
T ss_pred EEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc------------cCCCCCCEEEECCCchhhcCH
Confidence 4578899999999999999998 899999999999999999999999 999999999999999999887
Q ss_pred cCCCcceeeEEEEEEEccC----CCeEEeCcccCCcc-c---cccCHhHHh------------hhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS-L---LKVTKQSLA------------QTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~-l---~~~~~~~l~------------~~~~~~~~~LSgGq~q~ 274 (327)
+. ..+.++|+||.+ +.++.|...+.... . ...+.++.. +........|||||+||
T Consensus 72 ke-----lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQr 146 (258)
T COG1120 72 KE-----LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQR 146 (258)
T ss_pred HH-----HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHH
Confidence 66 788999999985 45677765544321 1 111111111 11111123499999999
Q ss_pred ccccccccccCCceEEcccHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+.+|+++ ..+|+++++|+|.
T Consensus 147 v~iArAL-aQ~~~iLLLDEPT 166 (258)
T COG1120 147 VLIARAL-AQETPILLLDEPT 166 (258)
T ss_pred HHHHHHH-hcCCCEEEeCCCc
Confidence 9999999 9999999999875
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.7e-24 Score=200.59 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=123.7
Q ss_pred ceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 138 EPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 138 ~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.+++.|.. ..+++++++.+ +|++.+|||.||||||||++++.+ +.+|++|+|+++|+++..
T Consensus 5 ~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~------------Le~PtsG~v~v~G~di~~ 72 (339)
T COG1135 5 ENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL------------LERPTSGSVFVDGQDLTA 72 (339)
T ss_pred EeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc------------cCCCCCceEEEcCEeccc
Confidence 444445543 46899999998 999999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
++...- +..++.++|++|.++. ++.++..|.... ++.+...+..+.+|.. |||||+
T Consensus 73 l~~~~L--r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~q---LSGGQK 147 (339)
T COG1135 73 LSEAEL--RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQ---LSGGQK 147 (339)
T ss_pred CChHHH--HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchh---cCcchh
Confidence 875432 4578999999998754 455555543211 2233344555666666 999999
Q ss_pred ccccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHh
Q 020346 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIR 310 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~ 310 (327)
||+++|+++ +.+|++++-| ||+--++..++|++++..
T Consensus 148 QRVaIARAL-a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~ 190 (339)
T COG1135 148 QRVAIARAL-ANNPKILLCDEATSALDPETTQSILELLKDINRE 190 (339)
T ss_pred hHHHHHHHH-hcCCCEEEecCccccCChHHHHHHHHHHHHHHHH
Confidence 999999999 9999999988 788889999999988664
No 16
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-23 Score=193.23 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=115.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+.++++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|.+.|.++....
T Consensus 5 i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG------------ll~p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG------------LLKPSSGEIKIFGKPVRKRR 72 (254)
T ss_pred EEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCcceEEEccccccccc
Confidence 45678899998657999999998 899999999999999999999999 99999999999998876654
Q ss_pred ccCCCcceeeEEEEEEEccCC------CeEEeCcccCCc-------------------cccccCHhHHhhhhHHHHHhcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG------GYLADTPGFNQP-------------------SLLKVTKQSLAQTFPEIKEMLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~------~~i~Dtpg~~~~-------------------~l~~~~~~~l~~~~~~~~~~LS 268 (327)
....++||||... .++.|...+... .++.+.+.++.+ .....||
T Consensus 73 --------~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~---r~i~~LS 141 (254)
T COG1121 73 --------KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD---RQIGELS 141 (254)
T ss_pred --------cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC---CcccccC
Confidence 3467999999531 122232222110 011111111111 1123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHhHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~~ 312 (327)
|||+||+.+|+|+ +.+|+++|+|+| .....+.++++++++.++
T Consensus 142 GGQ~QRV~lARAL-~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 142 GGQKQRVLLARAL-AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cHHHHHHHHHHHh-ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999 999999999955 577777789999887644
No 17
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=8.1e-24 Score=190.50 Aligned_cols=158 Identities=15% Similarity=0.255 Sum_probs=127.1
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.++..|+.-++++++++.+ +|++++++|+||||||||+++|+| +.+|.+|+|.|+|+++...+.
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~G------------l~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG------------LVRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeeEEECCeecCCCCH
Confidence 4577888999999999999998 999999999999999999999999 899999999999999999987
Q ss_pred cCCCcceeeEEEEEEEccC----CCeEEeCcccCCccc-----cccCHhHHhhhhHHHHHh-------cCcccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL-----LKVTKQSLAQTFPEIKEM-------LKANEPAKCSFN 278 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l-----~~~~~~~l~~~~~~~~~~-------LSgGq~q~~~~~ 278 (327)
... .+..++|+||.. .+++.++..+..... ..-..+.+...||.+.+. |||||+|.++++
T Consensus 73 ~~r----~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 73 HER----ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHH----HhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 654 778899999975 334555544332211 111256788889988764 999999999999
Q ss_pred ccccccCCceEEcccHH------HHHHHHHHHHHHHHh
Q 020346 279 NCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIR 310 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~ 310 (327)
+++ +.+|+++++|+|. =.+...+.++++++.
T Consensus 149 RAL-m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~ 185 (237)
T COG0410 149 RAL-MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185 (237)
T ss_pred HHH-hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc
Confidence 999 9999999999763 455555666666543
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=3.5e-24 Score=194.35 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=114.2
Q ss_pred ceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 138 EPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 138 ~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.+...|.. ..+++++++.+ +|+.++|+||||||||||||+|.| +..|++|.|+++|+++...
T Consensus 5 ~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~------------ld~pt~G~v~i~g~d~~~l 72 (226)
T COG1136 5 KNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG------------LDKPTSGEVLINGKDLTKL 72 (226)
T ss_pred eeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCceEEECCEEcCcC
Confidence 344444433 36899999998 999999999999999999999999 9999999999999999887
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCccc----CCcc-----------ccccCHhHHhh-hhHHHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGF----NQPS-----------LLKVTKQSLAQ-TFPEIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~----~~~~-----------l~~~~~~~l~~-~~~~~~~~LSgGq~ 272 (327)
+.+. +....++++++++|.++. ++.++..+ .... ++.+...+... .+|.. |||||+
T Consensus 73 ~~~~-~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~e---LSGGqq 148 (226)
T COG1136 73 SEKE-LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSE---LSGGQQ 148 (226)
T ss_pred CHHH-HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchh---cCHHHH
Confidence 6432 233457889999998643 33333321 1000 11112222222 44555 999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+++|+++ +++|.+++.|+| +.-+...+++.++.+.
T Consensus 149 QRVAIARAL-~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 149 QRVAIARAL-INNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred HHHHHHHHH-hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh
Confidence 999999999 999999999866 4667777778777554
No 19
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.87 E-value=2.4e-23 Score=189.61 Aligned_cols=151 Identities=15% Similarity=0.257 Sum_probs=118.0
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.|+.+++.|++..+++++++.+ +|+.++|+|||||||||++++|.+ +++|++|+|+++|+++.....
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr------------Liept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR------------LIEPTSGEILIDGEDISDLDP 70 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc------------ccCCCCceEEECCeecccCCH
Confidence 4788999999999999999998 899999999999999999999999 999999999999999998876
Q ss_pred cCCCcceeeEEEEEEEccC----CCeEEeCcccCCcc-----------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS-----------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~-----------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.. .++++||+-|.. +.++.++....... +-.++..+..+.+|.. |||||+|
T Consensus 71 ~~-----LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e---LSGGQQQ 142 (309)
T COG1125 71 VE-----LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHE---LSGGQQQ 142 (309)
T ss_pred HH-----HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchh---cCcchhh
Confidence 54 788999998864 33455554433110 1112333455566665 9999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+.+++++ ..+|.++++|+| -....++..+.++
T Consensus 143 RVGv~RAL-AadP~ilLMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 143 RVGVARAL-AADPPILLMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred HHHHHHHH-hcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence 99999999 999999999955 2334444444444
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.7e-23 Score=187.58 Aligned_cols=162 Identities=16% Similarity=0.271 Sum_probs=118.1
Q ss_pred cCCceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++..| ++..+++++++.+ +|+.++|||+|||||||||++|.| +.+|++|+|+++|.++...
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng------------l~d~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG------------LVDPTSGEILFNGVQITKL 71 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc------------ccCCCcceEEecccchhcc
Confidence 3467788888 7888999999998 999999999999999999999999 9999999999999988777
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--------cccccCHhHHhhhhHHH------------HHhcC
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--------SLLKVTKQSLAQTFPEI------------KEMLK 268 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--------~l~~~~~~~l~~~~~~~------------~~~LS 268 (327)
..+. -+..+++++|++|.++. +++.+...... .+..+..++....+..+ ...||
T Consensus 72 ~~k~--lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LS 149 (258)
T COG3638 72 KGKE--LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLS 149 (258)
T ss_pred chHH--HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCC
Confidence 6443 23478899999998754 22222111100 01111222111111111 23499
Q ss_pred ccccccccccccccccCCceEEccc------HHHHHHHHHHHHHHHHhH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~ 311 (327)
|||+||+++|+++ +.+|++++.|| |..-...+.+++++..+.
T Consensus 150 GGQQQRVaIARaL-~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~ 197 (258)
T COG3638 150 GGQQQRVAIARAL-VQQPKIILADEPVASLDPESAKKVMDILKDINQED 197 (258)
T ss_pred cchhHHHHHHHHH-hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc
Confidence 9999999999999 99999999884 456677777777776553
No 21
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.3e-23 Score=185.22 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=112.5
Q ss_pred CCceeeccCcchh----hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVESKL----GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~~~----~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
..+.+.+.|+.+. +++++++.+ +|++++|+|+||||||||.++|+| +.+|++|+|.++|.++.
T Consensus 5 ~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G------------l~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 5 SVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG------------LEKPSSGSILLDGKPLA 72 (252)
T ss_pred EEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc------------ccCCCCceEEECCcccC
Confidence 3466777787766 999999998 999999999999999999999999 99999999999998876
Q ss_pred cccccCCCcceeeEEEEEEEccCCCeE---------EeCcccC----C------ccccccCH-hHHhhhhHHHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGGYL---------ADTPGFN----Q------PSLLKVTK-QSLAQTFPEIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~~i---------~Dtpg~~----~------~~l~~~~~-~~l~~~~~~~~~~LSgG 270 (327)
.... .+...+.++||||++...+ +..|.-. . ..++.+.. .+....+|.. ||||
T Consensus 73 ~~~~----~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~e---LSGG 145 (252)
T COG1124 73 PKKR----AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHE---LSGG 145 (252)
T ss_pred cccc----chhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchh---cChh
Confidence 5432 1236788999999873322 1111111 0 01111111 2333445554 9999
Q ss_pred ccccccccccccccCCceEEcccHH------HHHHHHHHHHHHHHh
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIR 310 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~ 310 (327)
|+||++|++++ ..+|+++|.|++. -.+....++.++++.
T Consensus 146 Q~QRiaIARAL-~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~ 190 (252)
T COG1124 146 QRQRIAIARAL-IPEPKLLILDEPTSALDVSVQAQILNLLLELKKE 190 (252)
T ss_pred HHHHHHHHHHh-ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh
Confidence 99999999999 7899999999663 445555666666544
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=9.8e-23 Score=184.37 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=125.8
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.++++|+++.+++++++.+ +|++++|+|+||+|||||+++|.| +++|++|+|+++|.++...+
T Consensus 9 I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~G------------ll~P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG------------LLRPDKGEILIDGEDIPQLS 76 (263)
T ss_pred EEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhc------------cCCCCCCeEEEcCcchhccC
Confidence 34577899999999999999998 999999999999999999999999 99999999999999999887
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCccc----------------cccCHh-HHhhhhHHHHHhcCcccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL----------------LKVTKQ-SLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l----------------~~~~~~-~l~~~~~~~~~~LSgGq~ 272 (327)
.... ...++++++++|.. .+++.||.+|..... +.+... ...+.||.- |||||+
T Consensus 77 ~~~~--~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE---LSGGM~ 151 (263)
T COG1127 77 EEEL--YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSE---LSGGMR 151 (263)
T ss_pred HHHH--HHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchh---hcchHH
Confidence 6431 12678899999975 457788887742211 111111 224566665 999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+|+++|+++ ..+|.+++.|+| -....+-+|+.++++.
T Consensus 152 KRvaLARAi-aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 152 KRVALARAI-ALDPELLFLDEPTSGLDPISAGVIDELIRELNDA 194 (263)
T ss_pred HHHHHHHHH-hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh
Confidence 999999999 889999999855 4666777777777654
No 23
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.3e-22 Score=206.39 Aligned_cols=142 Identities=17% Similarity=0.310 Sum_probs=115.1
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.|++++|+|.. .++++|+++.+ +|+++|+|||||+||||++++|.+ +|+|++|+|.+||.|+.
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r------------fY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR------------FYDPTSGRILLDGVPIS 533 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCCeEEECCeehh
Confidence 568999999975 45899999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---hHHhhhhHHHHH--------------hcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---QSLAQTFPEIKE--------------MLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---~~l~~~~~~~~~--------------~LSgG 270 (327)
++..+. .++++++|.|++ ++++.|+..+.......-+. .+.++...-+.+ .||||
T Consensus 534 ~~~~~~-----lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 534 DINHKY-----LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred hcCHHH-----HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 998654 789999999987 66788888777653221111 122222222211 39999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++|+++ +.+|.++|+||.
T Consensus 609 QKQRIAIARAL-lr~P~VLILDEA 631 (716)
T KOG0058|consen 609 QKQRIAIARAL-LRNPRVLILDEA 631 (716)
T ss_pred HHHHHHHHHHH-hcCCCEEEEech
Confidence 99999999999 999999999953
No 24
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8.3e-23 Score=202.07 Aligned_cols=134 Identities=22% Similarity=0.353 Sum_probs=112.2
Q ss_pred cCCceeeccCcchh-hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.|+.++++|+.++ +|+++++++ +|+.+||+|+|||||||+||+|.+ +++ .+|+|++||+++.++
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr------------F~d-~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR------------FFD-YSGSILIDGQDIKEV 418 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH------------Hhc-cCCcEEECCeeHhhh
Confidence 66889999998776 999999998 999999999999999999999999 999 999999999999999
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHH---------------------------H
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIK---------------------------E 265 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~---------------------------~ 265 (327)
+... +++.++++|| |++.|.+..+.|+....+...++++. .
T Consensus 419 ~~~S-----lR~~Ig~VPQ-------d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~ 486 (591)
T KOG0057|consen 419 SLES-----LRQSIGVVPQ-------DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGL 486 (591)
T ss_pred ChHH-----hhhheeEeCC-------cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccc
Confidence 8765 8899999999 56677666655544333332222221 1
Q ss_pred hcCccccccccccccccccCCceEEcccH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.|||||+||+++++|+ +.+|.+.+.|++
T Consensus 487 ~LSGGekQrvslaRa~-lKda~Il~~DEa 514 (591)
T KOG0057|consen 487 MLSGGEKQRVSLARAF-LKDAPILLLDEA 514 (591)
T ss_pred ccccchHHHHHHHHHH-hcCCCeEEecCc
Confidence 3999999999999999 999999999865
No 25
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=1.8e-22 Score=175.84 Aligned_cols=149 Identities=18% Similarity=0.243 Sum_probs=105.2
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
..+.++|++.+- .+++.+ .|++++|+||||+|||||+|+++| |..|.+|+|+++|++.....+
T Consensus 5 ~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAG------------F~~P~~G~i~i~g~d~t~~~P-- 68 (231)
T COG3840 5 DDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAG------------FETPASGEILINGVDHTASPP-- 68 (231)
T ss_pred cceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHh------------ccCCCCceEEEcCeecCcCCc--
Confidence 445566655331 122233 799999999999999999999999 999999999999999887765
Q ss_pred CCcceeeEEEEEEEccCCC----eEEeCcccCCc-cc--------------cccCHhHHhhhhHHHHHhcCccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG----YLADTPGFNQP-SL--------------LKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~-~l--------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
..+-+++++|+++. ++..+.|+... .+ ..+..+...+..|.. |||||+||+++
T Consensus 69 -----~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~---LSGGqRQRvAL 140 (231)
T COG3840 69 -----AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE---LSGGQRQRVAL 140 (231)
T ss_pred -----ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc---cCchHHHHHHH
Confidence 45678999999765 44555555422 11 112223333344444 99999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
++|+ +.+.-++++|+| .=.+..+.++..+....
T Consensus 141 ARcl-vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 141 ARCL-VREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred HHHH-hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 9999 888888888854 33345556666665543
No 26
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.3e-22 Score=186.37 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=118.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce---eeccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVGEV 212 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~---~v~~~ 212 (327)
.+.+...|+...+++++++.+ .|+.++++|||||||||||++|+| +..|++|.|.+||. ++..+
T Consensus 5 i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG------------Le~p~~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 5 INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG------------LETPDAGRIRLNGRVLFDVSNL 72 (345)
T ss_pred ehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC------------cCCCCCceEEECCEeccchhcc
Confidence 344556667777888999998 899999999999999999999999 99999999999999 55554
Q ss_pred cccCCCcceeeEEEEEEEccC----CCeEEeCcccCCcc-----------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS-----------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~-----------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
+. ..+++|+++|+. .+++.|+..|.... +..+..+.+.+.+|.. |||||
T Consensus 73 ~~-------~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~Q---LSGGQ 142 (345)
T COG1118 73 AV-------RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQ---LSGGQ 142 (345)
T ss_pred ch-------hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchh---cChHH
Confidence 32 457899999975 66788888876521 2234455677778877 99999
Q ss_pred cccccccccccccCCceEEcccHH------HHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~ 310 (327)
+||+++|+++ .-||.++++|+|. -...+++-|.++.++
T Consensus 143 rQRVALARAL-A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~ 186 (345)
T COG1118 143 RQRVALARAL-AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186 (345)
T ss_pred HHHHHHHHHh-hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999 8999999999663 334445555555443
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2e-22 Score=179.48 Aligned_cols=162 Identities=15% Similarity=0.229 Sum_probs=114.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--ccccceeecceeecc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~v~~ 211 (327)
+..+.+.+.|+++++|+++++.+ +++++||+|||||||||||++|..... +++ -.+|+|+++|+++..
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---------l~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---------LIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---------cCcCceEEEEEEECCeeccC
Confidence 34567888999999999999998 899999999999999999999998332 222 135999999999876
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCcc--ccc-----cCHh--HHhhhhHHHHH-------hcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPS--LLK-----VTKQ--SLAQTFPEIKE-------MLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~--l~~-----~~~~--~l~~~~~~~~~-------~LSgGq~ 272 (327)
..... -..++.+|||+|.++ .++.|+..+.... ..+ +-.. ..+....|... .|||||+
T Consensus 79 ~~~d~---~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 79 PKVDV---VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred CCCCH---HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 53221 127889999999864 4677776554221 111 0000 11112222221 2899999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+.+|+++ .-+|.++++|+| -.-....+++.|+++
T Consensus 156 QRLcIARal-Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~ 197 (253)
T COG1117 156 QRLCIARAL-AVKPEVLLMDEPTSALDPISTLKIEELITELKK 197 (253)
T ss_pred HHHHHHHHH-hcCCcEEEecCcccccCchhHHHHHHHHHHHHh
Confidence 999999999 889999999955 355555667777763
No 28
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.84 E-value=4.6e-22 Score=207.14 Aligned_cols=142 Identities=19% Similarity=0.314 Sum_probs=117.6
Q ss_pred cCCceeeccCcch--hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|... .+++++++.+ +|++++|||+||||||||+|+|.| +|+|++|+|.+||.+++.
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g------------ly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG------------LYKPQQGRILLDGVDLND 539 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEeHHh
Confidence 5688899999754 6999999998 899999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcccccc---CHhHHhhhhHHHHHh--------------cCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKV---TKQSLAQTFPEIKEM--------------LKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~---~~~~l~~~~~~~~~~--------------LSgGq 271 (327)
++... .++.+++++|++ .+++.|+..+..+....- +...++...+.+.+. |||||
T Consensus 540 i~~~~-----lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ 614 (709)
T COG2274 540 IDLAS-----LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614 (709)
T ss_pred cCHHH-----HHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence 98765 899999999985 567778777776654321 122333333444332 99999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++|+++ +++|.++++||+
T Consensus 615 rQrlalARaL-l~~P~ILlLDEa 636 (709)
T COG2274 615 RQRLALARAL-LSKPKILLLDEA 636 (709)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCc
Confidence 9999999999 999999999954
No 29
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=4.8e-22 Score=201.91 Aligned_cols=143 Identities=19% Similarity=0.289 Sum_probs=110.2
Q ss_pred hcCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 134 TWGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 134 ~~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.+.++.++++|.+ +.+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.+||.++.+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g------------~~~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG------------LLDPLQGEVTLDGVSVSS 401 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEhhh
Confidence 3668889999965 46899999998 999999999999999999999999 999999999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcccccc---------CHhHHhhhhHH--------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKV---------TKQSLAQTFPE--------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~---------~~~~l~~~~~~--------~~~~LSgGq 271 (327)
+ ... .+++++++||++ ++++.|+..+..+...+- ...+.-..+|+ -...|||||
T Consensus 402 ~-~~~-----lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 475 (529)
T TIGR02868 402 L-QDE-----LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGE 475 (529)
T ss_pred H-HHH-----HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHH
Confidence 8 554 788999999986 445666655543221110 11111111111 012399999
Q ss_pred cccccccccccccCCceEEcccHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+||+++|+++ +.+|.++|+||+.
T Consensus 476 rQRiaiARal-l~~~~iliLDE~T 498 (529)
T TIGR02868 476 RQRLALARAL-LADAPILLLDEPT 498 (529)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCc
Confidence 9999999999 9999999999653
No 30
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.9e-21 Score=178.42 Aligned_cols=154 Identities=18% Similarity=0.255 Sum_probs=116.4
Q ss_pred CceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc-cc
Q 020346 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VS 213 (327)
Q Consensus 137 ~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~-~s 213 (327)
++.++++|.+. .+++++++.+ +|+.++|+|+||||||||+++|.| +++|++|.|+++|.++.. .+
T Consensus 6 ~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G------------Ll~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 6 AENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG------------LLKPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred EEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcC------------cCcCCCCEEEECCeeccchhh
Confidence 56788888775 8999999998 799999999999999999999999 999999999999998773 33
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeC-----cccCCccc---------------cccCHhHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADT-----PGFNQPSL---------------LKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dt-----pg~~~~~l---------------~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
... .++.+++++|++...++.. ..|....+ +.+...++.+..|. .|||||+|
T Consensus 74 ~~~-----~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~---~LSGGqkq 145 (235)
T COG1122 74 LLE-----LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF---NLSGGQKQ 145 (235)
T ss_pred HHH-----hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc---ccCCccee
Confidence 222 6889999999985543322 22221111 11111222223332 39999999
Q ss_pred cccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHhH
Q 020346 274 KCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~ 311 (327)
|++||..+ ..+|.++|+| |+.......++++++....
T Consensus 146 RvaIA~vL-a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 146 RVAIAGVL-AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred eHHhhHHH-HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999777 9999999999 4568888888888887663
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.6e-21 Score=178.20 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=108.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+|+|+| +++|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG------------LLRPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEccccChh
Confidence 456777887778999999998 999999999999999999999999 8999999999999987654321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------------HHhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
. ....++.++|+||.+.. ++.|+..+........... .+..........|||||+||+.++
T Consensus 71 ~--~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 71 E--LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred h--HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0 01145679999997532 2223222110000000000 000000111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 149 ~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 184 (235)
T cd03261 149 RAL-ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184 (235)
T ss_pred HHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 456666667776654
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8e-22 Score=191.12 Aligned_cols=151 Identities=15% Similarity=0.249 Sum_probs=111.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...+
T Consensus 7 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG------------l~~p~~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG------------LEKPTEGQIFIDGEDVTHRS 74 (351)
T ss_pred EEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC------------CCCCCceEEEECCEECCCCC
Confidence 34677888888778899999998 899999999999999999999999 99999999999999887654
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. .++.|+..+... .++.+....+.+..+. .|||||+||
T Consensus 75 ~-------~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~---~LSgGq~QR 144 (351)
T PRK11432 75 I-------QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD---QISGGQQQR 144 (351)
T ss_pred H-------HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHH
Confidence 2 3467999999753 344454443211 0111122222333333 399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+++++++ +.+|+++++|+| .-.+.++..++++.
T Consensus 145 VaLARaL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 145 VALARAL-ILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred HHHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 34444555555553
No 33
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=9.3e-22 Score=191.04 Aligned_cols=152 Identities=14% Similarity=0.195 Sum_probs=111.1
Q ss_pred cCCceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++| ++..+++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|+++|.++...
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG------------l~~p~~G~I~~~g~~i~~~ 71 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG------------LERITSGEIWIGGRVVNEL 71 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHC------------CCCCCceEEEECCEECCCC
Confidence 3456778888 6677999999998 899999999999999999999999 8999999999999998765
Q ss_pred cccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
+. ..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+. .|||||+|
T Consensus 72 ~~-------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~LSgGq~Q 141 (356)
T PRK11650 72 EP-------ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR---ELSGGQRQ 141 (356)
T ss_pred CH-------HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh---hCCHHHHH
Confidence 43 2367999999752 3344444332110 111122222333333 39999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|.++++|+| ...+.+++.++++..
T Consensus 142 RvalARAL-~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 142 RVAMGRAI-VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred HHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 344455555555543
No 34
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.7e-21 Score=175.46 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=106.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~- 69 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG------------LERPDSGEILIDGRDVTGVPP- 69 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEcCcCch-
Confidence 456777887778999999998 999999999999999999999999 899999999999998764331
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
..+.++++||.+. .++.|+..+..... .... .+ +..........|||||+||+.++
T Consensus 70 ------~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 142 (213)
T cd03259 70 ------ERRNIGMVFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA 142 (213)
T ss_pred ------hhccEEEEcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 2456899999752 22223222110000 0000 00 10111111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| .....+.+++.++..
T Consensus 143 ~al-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 143 RAL-AREPSLLLLDEPLSALDAKLREELREELKELQR 178 (213)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455556666666644
No 35
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.83 E-value=1.6e-21 Score=199.69 Aligned_cols=142 Identities=20% Similarity=0.323 Sum_probs=112.5
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.|+.++++|. ++++++++++.+ +|+++|||||||||||||+|+|.+ +|+|++|+|.+||+++.++
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r------------~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR------------LYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCeEEECCEehhhc
Confidence 56889999998 689999999998 999999999999999999999999 9999999999999999999
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---hHHhhhhHHHH--------------HhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---QSLAQTFPEIK--------------EMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---~~l~~~~~~~~--------------~~LSgGq~ 272 (327)
+... .+++++++||++ ++++.|+..+..+...+-+. .+.+...+.+. ..|||||+
T Consensus 397 ~~~~-----lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 397 SLDS-----LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred CHHH-----HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 8765 789999999975 44556666655443211011 01111111111 23999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++|+++ +.+|.++|+||+
T Consensus 472 QrlaiARal-l~~~~ILILDEa 492 (567)
T COG1132 472 QRLAIARAL-LRNPPILILDEA 492 (567)
T ss_pred HHHHHHHHH-hcCCCEEEEecc
Confidence 999999999 999999999965
No 36
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=2.5e-21 Score=184.38 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=111.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G------------l~~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG------------LTHPDAGSISLCGEPVPSRA 75 (306)
T ss_pred EEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEecccch
Confidence 34577888888888999999998 899999999999999999999999 89999999999999886543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------------HHhhhhHHHHHhcCcccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
.. .++.++|+||++.. ++.|+..+... +...... ++..........||+||+||+.
T Consensus 76 ~~------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 76 RH------ARQRVGVVPQFDNLDPDFTVRENLLVFGR-YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLT 148 (306)
T ss_pred HH------HHhcEEEEeccCcCCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHH
Confidence 21 46789999997532 22233221110 0000000 0111111112359999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+++++ +++|.++++|+| .-...+.+++++++..
T Consensus 149 la~aL-~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 187 (306)
T PRK13537 149 LARAL-VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187 (306)
T ss_pred HHHHH-hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 99999 999999999954 4555566677777543
No 37
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.5e-22 Score=193.29 Aligned_cols=143 Identities=21% Similarity=0.326 Sum_probs=112.0
Q ss_pred hcCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 134 TWGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 134 ~~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.+.|++++|+|. .+++++|++|.+ +|+++|+|||||+||||++++|.+ +++.++|+|.+||+++..
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR------------ffdv~sGsI~iDgqdIrn 604 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR------------FFDVNSGSITIDGQDIRN 604 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH------------HhhccCceEEEcCchHHH
Confidence 356888999996 578999999998 999999999999999999999999 999999999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHH---hh------hhHHHHH--------hcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSL---AQ------TFPEIKE--------MLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l---~~------~~~~~~~--------~LSgGq 271 (327)
+...+ .+++||.+||+. +.++.++..+..+...+-+.... +. .|||-.+ .|||||
T Consensus 605 vt~~S-----LRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE 679 (790)
T KOG0056|consen 605 VTQSS-----LRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE 679 (790)
T ss_pred HHHHH-----HHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence 87665 789999999963 34455555555544333222111 11 2232211 289999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++|+.+ +..|.++++|+.
T Consensus 680 KQRVAiARti-LK~P~iIlLDEA 701 (790)
T KOG0056|consen 680 KQRVAIARTI-LKAPSIILLDEA 701 (790)
T ss_pred hhhHHHHHHH-hcCCcEEEEcch
Confidence 9999999999 999999999854
No 38
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.82 E-value=1.5e-21 Score=188.70 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=112.2
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|.| +.+|++|+|+++|.++.
T Consensus 3 ~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~g------------l~~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 3 KLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL------------LERPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECC
Confidence 35667777742 36899999998 899999999999999999999999 99999999999999887
Q ss_pred cccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
..+.... +..++.++|+||.+.. ++.|+..+... .++.+...+..+..+. .|||||
T Consensus 71 ~~~~~~l--~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~---~LSgGq 145 (343)
T TIGR02314 71 TLSNSEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS---NLSGGQ 145 (343)
T ss_pred cCCHHHH--HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHH
Confidence 6543210 1135689999998533 23333322110 0111112222233333 399999
Q ss_pred cccccccccccccCCceEEccc------HHHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~ 310 (327)
+||+.+++++ +.+|.++++|+ +...+...++++++...
T Consensus 146 kQRV~IARAL-~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~ 189 (343)
T TIGR02314 146 KQRVAIARAL-ASNPKVLLCDEATSALDPATTQSILELLKEINRR 189 (343)
T ss_pred HHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 89999999994 45666777777777543
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.82 E-value=2e-21 Score=189.90 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=112.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 15 L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG------------l~~p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG------------FETPDSGRIMLDGQDITHVP 82 (375)
T ss_pred EEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECCCCC
Confidence 45677888888778899999998 899999999999999999999999 99999999999999887654
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. .++.|+..+.... ++.+.+..+.+..|. .|||||+||
T Consensus 83 ~-------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~---~LSgGq~QR 152 (375)
T PRK09452 83 A-------ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH---QLSGGQQQR 152 (375)
T ss_pred H-------HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---hCCHHHHHH
Confidence 3 2357999999853 3444554432110 111122223333333 399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|+++++|+| ...+.++..++++..
T Consensus 153 VaLARaL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 153 VAIARAV-VNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344445555555543
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.6e-21 Score=175.12 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=106.1
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+ .
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~-~ 69 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT------------LLKPTSGRATVAGHDVVREP-R 69 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEecCcCh-H
Confidence 456777887778999999998 999999999999999999999999 88999999999998765422 1
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
. ..+.++++||++.. ++.|+..+... . ++.+......+.. ...|||||+||+.
T Consensus 70 ~-----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LS~G~~qr~~ 141 (220)
T cd03265 70 E-----VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL---VKTYSGGMRRRLE 141 (220)
T ss_pred H-----HhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC---hhhCCHHHHHHHH
Confidence 1 34578999997532 12222111000 0 0001111111111 2349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 142 la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (220)
T cd03265 142 IARSL-VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179 (220)
T ss_pred HHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH
Confidence 99999 999999999965 455666666766644
No 41
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.82 E-value=1.8e-21 Score=188.92 Aligned_cols=151 Identities=13% Similarity=0.220 Sum_probs=110.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|.++|+++...+
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~~~~~~ 72 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG------------LERQTAGTIYQGGRDITRLP 72 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHC------------CCCCCceEEEECCEECCCCC
Confidence 34567888888878899999998 899999999999999999999999 89999999999999886544
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. +++.++..+.... ++.+.+..+.+..+. .|||||+||
T Consensus 73 ~-------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~---~LSgGq~QR 142 (353)
T TIGR03265 73 P-------QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG---QLSGGQQQR 142 (353)
T ss_pred H-------HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChh---hCCHHHHHH
Confidence 2 2457999999752 3444444332110 111112222233333 399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+++++++ +.+|+++++|+| .....+++.++++.
T Consensus 143 vaLARaL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 181 (353)
T TIGR03265 143 VALARAL-ATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 (353)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 34444555555553
No 42
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.82 E-value=2.9e-21 Score=187.39 Aligned_cols=151 Identities=18% Similarity=0.230 Sum_probs=109.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|+++...+.
T Consensus 4 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG------------l~~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 4 EIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG------------LEHQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCCH
Confidence 3567778887778999999998 999999999999999999999999 899999999999998865432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc-------------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS-------------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~-------------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
..+.++|++|++.. ++.++..+.... ++.+.+.++.+..+ ..|||||
T Consensus 72 -------~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---~~LSgGq 141 (353)
T PRK10851 72 -------RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---AQLSGGQ 141 (353)
T ss_pred -------HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---hhCCHHH
Confidence 23579999997532 333333322110 11111112222222 2399999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+++++++ +.+|.++++|+| ...+.++++++++..
T Consensus 142 ~QRvalArAL-~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 142 KQRVALARAL-AVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 344555566666644
No 43
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=5.1e-21 Score=168.14 Aligned_cols=140 Identities=15% Similarity=0.220 Sum_probs=104.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG------------LEEPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEccccchh
Confidence 456677777777999999998 999999999999999999999999 8999999999999987654310
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
.....+.+++++|.+..+ .. ....+++... ||+||+||+.+++++ +.+|.++++|+|
T Consensus 71 ---~~~~~~~i~~~~q~~~~~--~~----~t~~~~l~~~------------lS~G~~qr~~la~al-~~~p~llilDEP~ 128 (178)
T cd03229 71 ---LPPLRRRIGMVFQDFALF--PH----LTVLENIALG------------LSGGQQQRVALARAL-AMDPDVLLLDEPT 128 (178)
T ss_pred ---HHHHhhcEEEEecCCccC--CC----CCHHHheeec------------CCHHHHHHHHHHHHH-HCCCCEEEEeCCc
Confidence 011456789999853210 00 0111111110 999999999999999 999999999955
Q ss_pred -----HHHHHHHHHHHHHHHh
Q 020346 295 -----ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~~~ 310 (327)
...+.+.+++.++...
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~ 149 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQ 149 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 4566666777776543
No 44
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.82 E-value=3.8e-21 Score=197.64 Aligned_cols=141 Identities=25% Similarity=0.289 Sum_probs=107.8
Q ss_pred cCCceeecc-CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCS-VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s-~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++++ |.++.+++++++.+ +|++++|+|+||||||||+++|+| ++ |++|+|.+||.++.++
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g------------~~-p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG------------FL-PYQGSLKINGIELREL 416 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CC-CCCcEEEECCEecccC
Confidence 567777654 45667999999998 999999999999999999999999 99 9999999999999988
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh------HHhh---hhHH-----H---HHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ------SLAQ---TFPE-----I---KEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~------~l~~---~~~~-----~---~~~LSgGq~ 272 (327)
+... .+++++++||++ ++++.|+..+..+....-+.. .+.+ .+|+ + -..|||||+
T Consensus 417 ~~~~-----lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 417 DPES-----WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred CHHH-----HHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 7654 788999999986 556667766653321111110 1111 1111 0 123999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++|+++ +.+|.++|+||+
T Consensus 492 QRialARAl-l~~~~IliLDE~ 512 (588)
T PRK11174 492 QRLALARAL-LQPCQLLLLDEP 512 (588)
T ss_pred HHHHHHHHH-hcCCCEEEEeCC
Confidence 999999999 999999999965
No 45
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.82 E-value=3.1e-21 Score=172.88 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=105.0
Q ss_pred ceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
+.+.++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~--- 67 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG------------LIKESSGSILLNGKPIKAK--- 67 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEhhhH---
Confidence 456677766 67899999998 999999999999999999999999 8899999999999887431
Q ss_pred CCCcceeeEEEEEEEccCCC-----eEEeCcccCCcc-----------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPS-----------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
. ..++++|++|++.. ++.|+..+.... ++.+...+..+.. ...|||||+||+.+++
T Consensus 68 ~-----~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LS~G~~qrv~lar 139 (205)
T cd03226 68 E-----RRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH---PLSLSGGQKQRLAIAA 139 (205)
T ss_pred H-----hhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC---chhCCHHHHHHHHHHH
Confidence 1 34578999997421 222222211000 0001111111112 2349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++..
T Consensus 140 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (205)
T cd03226 140 AL-LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174 (205)
T ss_pred HH-HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999955 455566667776643
No 46
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.82 E-value=2.7e-21 Score=174.51 Aligned_cols=154 Identities=14% Similarity=0.189 Sum_probs=107.4
Q ss_pred CceeeccCcch----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~ 71 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG------------LLEPDAGFATVDGFDVVK 71 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CcCCCCceEEECCEEccc
Confidence 46677788665 7999999998 899999999999999999999999 899999999999998764
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccc----------ccCHhHHhhhhHHHHHhcCccccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLL----------KVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~----------~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
.+. ..++.++++||.+.. ++.|+..+... ... .++...+..........|||||+||+
T Consensus 72 ~~~------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 72 EPA------EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred CHH------HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHH
Confidence 221 145679999997522 22222211100 000 00000111111222344999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 146 ~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 184 (218)
T cd03266 146 AIARAL-VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184 (218)
T ss_pred HHHHHH-hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 455666667776643
No 47
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.82 E-value=2.3e-21 Score=203.53 Aligned_cols=143 Identities=15% Similarity=0.233 Sum_probs=110.2
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|.. +.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+||.++.+
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG------------LYQPWSGEILFDGIPREE 545 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEeHHH
Confidence 567889999964 57999999998 999999999999999999999999 999999999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---------hHHhhhhHH--------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---------QSLAQTFPE--------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---------~~l~~~~~~--------~~~~LSgGq 271 (327)
++... .++.++++||++ ++++.|+..+..+....-+. .+.-..+|+ --..|||||
T Consensus 546 ~~~~~-----lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 546 IPREV-----LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred CCHHH-----HHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 87654 788999999986 44566665544322111000 010111110 012399999
Q ss_pred cccccccccccccCCceEEcccHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+||+++++++ +.+|.++++||+.
T Consensus 621 rQRiaLARal-l~~p~iliLDEpt 643 (710)
T TIGR03796 621 RQRLEIARAL-VRNPSILILDEAT 643 (710)
T ss_pred HHHHHHHHHH-hhCCCEEEEECcc
Confidence 9999999999 9999999999663
No 48
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.82 E-value=6.1e-21 Score=171.65 Aligned_cols=152 Identities=17% Similarity=0.260 Sum_probs=105.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~v~~~g~~~~~~~~- 69 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG------------LEEPTSGRIYIGGRDVTDLPP- 69 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCcCCc-
Confidence 456777887778999999998 999999999999999999999999 889999999999998754432
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------H------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------S------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------~------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
..+.+++++|.+.. ++.|+..+... ....... + +..........||+||+||+.++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la 142 (213)
T cd03301 70 ------KDRDIAMVFQNYALYPHMTVYDNIAFGLK-LRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG 142 (213)
T ss_pred ------ccceEEEEecChhhccCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHH
Confidence 23579999987522 22222211100 0000000 0 00111111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|+++++|+| .......++++++..
T Consensus 143 ral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 143 RAI-VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455555566666644
No 49
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=5.4e-21 Score=165.96 Aligned_cols=121 Identities=16% Similarity=0.278 Sum_probs=99.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG------------LYKPDSGEILVDGKEVSFASPR 70 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEECCcCCHH
Confidence 466778887778999999998 999999999999999999999999 8999999999999987654321
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
. ..++.+++++| ||+||+||+.+++++ +.+|.++++|+|
T Consensus 71 ~----~~~~~i~~~~q-----------------------------------LS~G~~qrl~laral-~~~p~illlDEP~ 110 (163)
T cd03216 71 D----ARRAGIAMVYQ-----------------------------------LSVGERQMVEIARAL-ARNARLLILDEPT 110 (163)
T ss_pred H----HHhcCeEEEEe-----------------------------------cCHHHHHHHHHHHHH-hcCCCEEEEECCC
Confidence 1 13456778776 999999999999999 999999999965
Q ss_pred -----HHHHHHHHHHHHHHH
Q 020346 295 -----ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~~ 309 (327)
...+...++++++..
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~ 130 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRA 130 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 455566666666643
No 50
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.82 E-value=1.7e-21 Score=175.84 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=105.4
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILG------------IEKPTRGKIRFNGQDLTRLR 71 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEehhhcC
Confidence 4567777754 35899999998 999999999999999999999999 89999999999999876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
... ....++.++|++|++.. ++.|+..+... . ++.+......+.. ...|||||+||
T Consensus 72 ~~~--~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgG~~qr 146 (216)
T TIGR00960 72 GRE--IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL---PMQLSGGEQQR 146 (216)
T ss_pred hhH--HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC---hhhCCHHHHHH
Confidence 211 00134578999997532 22222211100 0 0001111111111 23499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|+++++|+| ...+.+.+++.++..
T Consensus 147 v~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 186 (216)
T TIGR00960 147 VAIARAI-VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR 186 (216)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555556666543
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.82 E-value=3e-21 Score=175.82 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=107.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.++.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG------------LVKPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEecccCCHh
Confidence 456778887778999999998 999999999999999999999999 8899999999999987654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.. ....+++++|.+.. ++.|+..+.... ..... .+ +..........||+||+||+.++
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 145 (232)
T cd03218 71 KR----ARLGIGYLPQEASIFRKLTVEENILAVLEI-RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIA 145 (232)
T ss_pred HH----HhccEEEecCCccccccCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 11 23468999987532 222222111000 00000 00 11111111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.++++++..
T Consensus 146 ~al-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 181 (232)
T cd03218 146 RAL-ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181 (232)
T ss_pred HHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455566667766654
No 52
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.82 E-value=2.8e-19 Score=153.79 Aligned_cols=142 Identities=27% Similarity=0.375 Sum_probs=103.2
Q ss_pred cccccccEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhc-CCceeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 149 (327)
..++++|++++|.++..|..+ ...+.+++.. ...++|+++|+||+|+.+++....|...+.+. .+..+.+|.....+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 357899999999999887443 5678888864 34468999999999998877666677766553 23346667665555
Q ss_pred HHHHHhhc----------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 150 LDSLLQRL----------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 150 l~~l~~~l----------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
++.+...+ .+..++++|+||+|||||+|+|.+... ..++.. +|
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~----------------------~~~~~~---~g-- 135 (157)
T cd01858 83 KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV----------------------CKVAPI---PG-- 135 (157)
T ss_pred HHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc----------------------eeeCCC---CC--
Confidence 55443332 245678999999999999999999431 122222 33
Q ss_pred ceeeEEEEEEEccCCCeEEeCccc
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
+|++..+++...+.+++||||+
T Consensus 136 --~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 136 --ETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred --eeEeEEEEEcCCCEEEEECcCC
Confidence 7888899998777899999995
No 53
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=5.9e-21 Score=175.07 Aligned_cols=154 Identities=15% Similarity=0.184 Sum_probs=107.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 4 EVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG------------LERPDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCcCCc
Confidence 3567788887778999999998 999999999999999999999999 889999999999998754331
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccc---cCH-------hH------HhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK---VTK-------QS------LAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~---~~~-------~~------l~~~~~~~~~~LSgGq~q~ 274 (327)
..+.++|++|.+.. ++.|+..+....... ... .+ +..........||+||+||
T Consensus 72 -------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 144 (239)
T cd03296 72 -------QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQR 144 (239)
T ss_pred -------cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 23568999997532 222322221000000 000 00 1001111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 145 l~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 145 VALARAL-AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184 (239)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999 899999999965 455556667766654
No 54
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.82 E-value=2.7e-21 Score=174.11 Aligned_cols=158 Identities=13% Similarity=0.200 Sum_probs=106.6
Q ss_pred CceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++| .+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG------------ALTPSRGQVRIAGEDVNRLRG 71 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEcccCCH
Confidence 45667777 4567899999998 999999999999999999999999 889999999999998865432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccc--cc--CHh------HHhhhhHHHHHhcCcccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLL--KV--TKQ------SLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~--~~--~~~------~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.. .....+.+++++|.+.. ++.|+..+... ... .. ... .+..........|||||+||+.++
T Consensus 72 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 72 RQ--LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred HH--HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 11 01134678999987532 22222211100 000 00 000 011111111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| .....+.++++++..
T Consensus 150 ~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 185 (214)
T TIGR02673 150 RAI-VNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185 (214)
T ss_pred HHH-hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 899999999965 455566666666644
No 55
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.82 E-value=6.1e-21 Score=171.50 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=107.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.....
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~- 69 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL------------LEEPDSGTIIIDGLKLTDDKK- 69 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCccch-
Confidence 456777887778999999998 999999999999999999999999 889999999999987742110
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhh---------hHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQT---------FPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~---------~~~~~~~LSgGq~q~~~~~ 278 (327)
......+.++|++|++.. .+.|+..+........... ..... .......||+||+||++++
T Consensus 70 --~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 70 --NINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred --hHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH
Confidence 001145679999997532 2223222210000000000 00000 0111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 148 ~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 183 (213)
T cd03262 148 RAL-AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183 (213)
T ss_pred HHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455666677777654
No 56
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.7e-21 Score=187.72 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=109.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG------------l~~p~~G~I~~~g~~i~~~~ 71 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG------------LEDITSGDLFIGEKRMNDVP 71 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECCCCC
Confidence 34567888888778999999998 899999999999999999999999 89999999999999886543
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. .++.|+..+... . ++.+.+....+..+ ..|||||+||
T Consensus 72 ~-------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---~~LSgGq~QR 141 (369)
T PRK11000 72 P-------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---KALSGGQRQR 141 (369)
T ss_pred H-------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---hhCCHHHHHH
Confidence 2 2356999999753 233343332110 0 01111111112222 3499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|+++|+|+| .-.+.++++++++..
T Consensus 142 vaLAraL-~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 142 VAIGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344445555555543
No 57
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.81 E-value=5.6e-21 Score=199.92 Aligned_cols=142 Identities=19% Similarity=0.285 Sum_probs=110.4
Q ss_pred hcCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.+.++|. ++.+++++++.+ +|++++|+|+||||||||+|+|+| +++|++|+|.+||.++.
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG------------FETPESGSVFYDGQDLA 518 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEEcC
Confidence 366788999995 357999999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcccccc---------CHhHHhhhhHH--------HHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKV---------TKQSLAQTFPE--------IKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~---------~~~~l~~~~~~--------~~~~LSgG 270 (327)
+++... .+++++++||++ ++++.|+..+..+ ...- ...+.-...|+ --..||||
T Consensus 519 ~~~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 519 GLDVQA-----VRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred cCCHHH-----HHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 887654 788999999985 4456666555433 1110 00111111111 01239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|.++++||+
T Consensus 593 QrQRialARAl-l~~p~iLiLDEp 615 (686)
T TIGR03797 593 QRQRLLIARAL-VRKPRILLFDEA 615 (686)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCC
Confidence 99999999999 999999999965
No 58
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.81 E-value=4.2e-21 Score=173.33 Aligned_cols=158 Identities=19% Similarity=0.250 Sum_probs=107.0
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~~~~ 70 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG------------LDRPTSGEVRVDGTDISK 70 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhC------------CcCCCceeEEECCEehhh
Confidence 4567777865 57899999998 999999999999999999999999 899999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhHHh---------hhhHHHHHhcCcccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQSLA---------QTFPEIKEMLKANEPAK 274 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~l~---------~~~~~~~~~LSgGq~q~ 274 (327)
.+.... .....+.+++++|.+.. ++.|+..+... ..... ...+. .........|||||+||
T Consensus 71 ~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (218)
T cd03255 71 LSEKEL-AAFRRRHIGFVFQSFNLLPDLTALENVELPLL-LAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR 148 (218)
T ss_pred cchhHH-HHHHhhcEEEEeeccccCCCCcHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH
Confidence 432100 00023578999987422 22222221100 00000 00011 11111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 149 v~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 188 (218)
T cd03255 149 VAIARAL-ANDPKIILADEPTGNLDSETGKEVMELLRELNK 188 (218)
T ss_pred HHHHHHH-ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455666667766644
No 59
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.81 E-value=5.5e-21 Score=184.56 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=111.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++....
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G------------l~~p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG------------MTSPDAGKITVLGVPVPARA 109 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCceEEEECCEECCcch
Confidence 45677888998888999999998 899999999999999999999999 99999999999999876432
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------HHh------hhhHHHHHhcCcccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------SLA------QTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------~l~------~~~~~~~~~LSgGq~q~~~ 276 (327)
.. .++.++++||.... ++.|+..+... +...... ++. .........||+||+||+.
T Consensus 110 ~~------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ 182 (340)
T PRK13536 110 RL------ARARIGVVPQFDNLDLEFTVRENLLVFGR-YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLT 182 (340)
T ss_pred HH------HhccEEEEeCCccCCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHH
Confidence 11 46679999997532 22232221100 0000000 011 1111112349999999999
Q ss_pred ccccccccCCceEEccc------HHHHHHHHHHHHHHHHh
Q 020346 277 FNNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIR 310 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~ 310 (327)
++.++ +++|.++++|+ +.....+.+++.++...
T Consensus 183 lA~aL-~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 183 LARAL-INDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221 (340)
T ss_pred HHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999 99999999995 45566666777777543
No 60
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=7.7e-22 Score=174.21 Aligned_cols=158 Identities=14% Similarity=0.175 Sum_probs=119.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
.+.+..+|+++.+++++++.+ +|++++++|||||||||.++++.| +.+|++|+|++++.+++..+..
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~G------------lv~~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG------------LVRPDSGKILLDDEDITKLPMH 74 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEE------------EEecCCceEEECCcccccCChH
Confidence 356778899999999999998 999999999999999999999999 9999999999999999999876
Q ss_pred CCCcceeeEEEEEEEccC----CCeEEeCcccCCcccc-c----cCHhHHhhhhHHH---------HHhcCccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSLL-K----VTKQSLAQTFPEI---------KEMLKANEPAKCSF 277 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l~-~----~~~~~l~~~~~~~---------~~~LSgGq~q~~~~ 277 (327)
.. .+..++|+||+. +.++.|+......... + ....++.....++ ...|||||++||.+
T Consensus 75 ~R----ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EI 150 (243)
T COG1137 75 KR----ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEI 150 (243)
T ss_pred HH----hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHH
Confidence 54 678899999975 2344444321111100 0 0011122222222 12399999999999
Q ss_pred cccccccCCceEEccc------HHHHHHHHHHHHHHHHhH
Q 020346 278 NNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~ 311 (327)
|+++ ..+|..+++|+ |--....+++++.+++++
T Consensus 151 ARaL-a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 151 ARAL-AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred HHHH-hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC
Confidence 9999 88999999995 447777788888887653
No 61
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=1.5e-20 Score=168.93 Aligned_cols=153 Identities=18% Similarity=0.296 Sum_probs=104.8
Q ss_pred ceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 138 ~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
+.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 ~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG------------LLGPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred eeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEcccCCH
Confidence 456677766 67899999998 999999999999999999999999 889999999999988765432
Q ss_pred cCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCH-------hHHhh------hhHHHHHhcCcccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTK-------QSLAQ------TFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~-------~~l~~------~~~~~~~~LSgGq~q~~~ 276 (327)
.. .++.++|+||.+.. ++.|+..+.... ..... .++.+ ........|||||+||+.
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 144 (211)
T cd03225 71 KE-----LRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN-LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA 144 (211)
T ss_pred HH-----HHhhceEEecChhhhcCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 11 45678999997421 122221110000 00000 00110 001112349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++ +.+|.++|+|+| ...+...+++.++..
T Consensus 145 laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 182 (211)
T cd03225 145 IAGVL-AMDPDILLLDEPTAGLDPAGRRELLELLKKLKA 182 (211)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999 999999999965 355555666666644
No 62
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.81 E-value=7.3e-21 Score=180.81 Aligned_cols=154 Identities=13% Similarity=0.159 Sum_probs=108.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++.....
T Consensus 6 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 6 DLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG------------MISPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECcccHH
Confidence 4567788888778999999998 999999999999999999999999 889999999999988753221
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------------HHhhhhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
..++.++|+||.+.. ++.|+..+... ....... .+..........|||||+||+.+
T Consensus 74 ------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~l 146 (303)
T TIGR01288 74 ------LARVAIGVVPQFDNLDPEFTVRENLLVFGR-YFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTL 146 (303)
T ss_pred ------HHhhcEEEEeccccCCcCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHH
Confidence 145679999997532 22222211000 0000000 01011111123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 147 a~al-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 183 (303)
T TIGR01288 147 ARAL-INDPQLLILDEPTTGLDPHARHLIWERLRSLLA 183 (303)
T ss_pred HHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 9999 999999999955 455566666666644
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.81 E-value=5.1e-21 Score=173.00 Aligned_cols=153 Identities=17% Similarity=0.243 Sum_probs=105.2
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++....
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~ 70 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG------------ELRPTSGTAYINGYSIRTDR 70 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEecccch
Confidence 4566777765 67999999998 999999999999999999999999 89999999999998875422
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--cccc----------cCHhHHhhhhHHHHHhcCccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLLK----------VTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~~----------~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
...++++++++|++.. ++.|+..+... .... ++..++..........||+||+||+.|
T Consensus 71 ------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 144 (220)
T cd03263 71 ------KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSL 144 (220)
T ss_pred ------HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHH
Confidence 1145679999997532 22222211100 0000 000011111111123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
++++ +.+|.++++|+| ...+.+.++++++.
T Consensus 145 a~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 145 AIAL-IGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred HHHH-hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999 999999999965 35555556666554
No 64
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.81 E-value=2.9e-21 Score=190.12 Aligned_cols=153 Identities=15% Similarity=0.211 Sum_probs=112.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 5 ~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG------------ll~p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 5 DVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING------------TLTPTAGTVLVAGDDVEALSA 72 (402)
T ss_pred EEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc------------CCCCCCcEEEECCEEcCcCCH
Confidence 4567888898888999999998 999999999999999999999999 899999999999998876553
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc----c---------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP----S---------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~----~---------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
.. ..+.+++++|.... .+.|+..+... . ++.+...++.+.. ...|||||
T Consensus 73 ~~-----~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~---~~~LSgGe 144 (402)
T PRK09536 73 RA-----ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP---VTSLSGGE 144 (402)
T ss_pred HH-----HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC---hhhCCHHH
Confidence 32 45679999997532 22232221110 0 0011111111111 23499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+.+++++ +++|.++++|+| .....++++++++..
T Consensus 145 rQRv~IArAL-~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~ 187 (402)
T PRK09536 145 RQRVLLARAL-AQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187 (402)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999965 455566677777754
No 65
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.81 E-value=3.9e-21 Score=173.82 Aligned_cols=156 Identities=13% Similarity=0.215 Sum_probs=107.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG------------LLPPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEcCCCCHH
Confidence 456777887777999999998 999999999999999999999999 8999999999999887654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhHHhhhh-------HHHHHhcCcccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQSLAQTF-------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~l~~~~-------~~~~~~LSgGq~q~~~~~~~ 280 (327)
.. .++.++++||.+.. ++.|+..+......... ...+...+ ......||+||+||+.++++
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 71 ER----ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred HH----HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 10 23568999987532 22222211110000000 01111111 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|.++++|+| ...+.+.++++++..
T Consensus 147 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (222)
T cd03224 147 L-MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD 180 (222)
T ss_pred H-hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 9 999999999965 455566666666643
No 66
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.81 E-value=4.4e-21 Score=186.67 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=110.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc--cceeecceeecc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL--GSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~--G~i~~~g~~v~~ 211 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++ |+|+++|.++..
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG------------l~~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG------------FVKAAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCEEEEECCEECCC
Confidence 45677888888778999999998 899999999999999999999999 999999 999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
.+. ..+.++|++|++.. ++.++..+.... ++.+.+.++.+..+. .|||||+
T Consensus 74 ~~~-------~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~---~LSgGq~ 143 (362)
T TIGR03258 74 APP-------HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---QLSGGMQ 143 (362)
T ss_pred CCH-------HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh---hCCHHHH
Confidence 432 24579999997532 333433321100 111111122223332 3999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+++++++ +.+|.++++|+| .....+++.++++..
T Consensus 144 QRvaLARAL-~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 185 (362)
T TIGR03258 144 QRIAIARAI-AIEPDVLLLDEPLSALDANIRANMREEIAALHE 185 (362)
T ss_pred HHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 999999999 999999999965 344455555555543
No 67
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.81 E-value=1e-20 Score=172.81 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=105.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG------------FLRPTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCCceEEECCEECCCCCHH
Confidence 456777787777999999998 999999999999999999999999 8899999999999987654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccc------------cC-HhHHhhh---------hHHHHHhcCc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK------------VT-KQSLAQT---------FPEIKEMLKA 269 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~------------~~-~~~l~~~---------~~~~~~~LSg 269 (327)
.. .+..++|+||.+.. ++.|+..+....... -. ....... .......|||
T Consensus 71 ~~----~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 146 (236)
T cd03219 71 EI----ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSY 146 (236)
T ss_pred HH----HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCH
Confidence 10 23458999997532 222222111000000 00 0001110 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 147 G~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 191 (236)
T cd03219 147 GQQRRLEIARAL-ATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191 (236)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 899999999965 355555566666643
No 68
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.81 E-value=7.3e-21 Score=174.47 Aligned_cols=158 Identities=17% Similarity=0.236 Sum_probs=107.3
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|+ +..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR------------LVEPSSGSILLEGTDITKLRG 71 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCccEEEECCEEhhhCCH
Confidence 466777887 677999999998 999999999999999999999999 899999999999988765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc--------cc---ccCHhHHhhhh---------HHHHHhcCcc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS--------LL---KVTKQSLAQTF---------PEIKEMLKAN 270 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~--------l~---~~~~~~l~~~~---------~~~~~~LSgG 270 (327)
... ...++.++++||.+.. ++.|+..+.... .. ........+.. ......||||
T Consensus 72 ~~~--~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 72 KKL--RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGG 149 (243)
T ss_pred HHH--HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHH
Confidence 110 0134578999987532 222332211000 00 00000111111 1112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+++++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 150 ~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 193 (243)
T TIGR02315 150 QQQRVAIARAL-AQQPDLILADEPIASLDPKTSKQVMDYLKRINK 193 (243)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 355556666666643
No 69
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=3.3e-21 Score=172.95 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=106.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+|++|+|+++|.++... .
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~--~ 68 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG------------LIKPDSGEITFDGKSYQKN--I 68 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCCcccch--H
Confidence 456777787778999999998 999999999999999999999999 8899999999999877543 1
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccc--c----cCHhHHhhhhHHHHHhcCccccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLL--K----VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~--~----~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
. ..+.++++||++.. ++.|+..+... ... . ++...+..........||+||+||+.+++++ +
T Consensus 69 ~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-~ 142 (208)
T cd03268 69 E-----ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL-L 142 (208)
T ss_pred H-----HHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHH-h
Confidence 1 34578999997532 22222211100 000 0 0000111111222345999999999999999 9
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+|.++++|+| ...+.+.+++.++..
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (208)
T cd03268 143 GNPDLLILDEPTNGLDPDGIKELRELILSLRD 174 (208)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999965 355555566666654
No 70
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=5.7e-21 Score=174.84 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=106.8
Q ss_pred CceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG------------LVEPTSGSVLIDGTDINKLKG 70 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCCceEEECCEeccccCH
Confidence 4567788876 67999999998 999999999999999999999999 889999999999998765431
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc--------cc---ccCHhHHhhhh-----HH----HHHhcCcc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS--------LL---KVTKQSLAQTF-----PE----IKEMLKAN 270 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~--------l~---~~~~~~l~~~~-----~~----~~~~LSgG 270 (327)
.. .....+.++++||+... ++.|+..+.... .. ........... .+ ....||||
T Consensus 71 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 148 (241)
T cd03256 71 KA--LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGG 148 (241)
T ss_pred hH--HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHH
Confidence 10 00134578999987532 222222111000 00 00000011100 00 11239999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 149 ~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (241)
T cd03256 149 QQQRVAIARAL-MQQPKLILADEPVASLDPASSRQVMDLLKRINR 192 (241)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 355555666666643
No 71
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=3.7e-21 Score=182.75 Aligned_cols=146 Identities=12% Similarity=0.161 Sum_probs=102.4
Q ss_pred cCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 143 s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
+|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...+. .
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~------~ 63 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT------------LLRPTSGTARVAGYDVVREPR------K 63 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcccCHH------H
Confidence 355567899999998 999999999999999999999999 899999999999988754221 1
Q ss_pred eeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccccccccccc
Q 020346 222 TTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 222 tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
.++.++++||.+.. ++.++..+... . ++.+......+ .....|||||+||+.+++|+
T Consensus 64 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgG~~qrv~la~al- 139 (302)
T TIGR01188 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD---RPVGTYSGGMRRRLDIAASL- 139 (302)
T ss_pred HHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC---CchhhCCHHHHHHHHHHHHH-
Confidence 45679999997532 22222111000 0 00011111111 11234999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+++|.++++|+| .....+.++++++...
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 999999999954 4556666777776543
No 72
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=1e-20 Score=179.23 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=113.2
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
....+..+|+ ...+++++++.+ +|++++|+||||||||||||+|+| +..|++|+|.++|.+...-.
T Consensus 6 ~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~g------------l~~p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG------------LLKPTSGEILVLGYDVVKEP 73 (293)
T ss_pred eecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEEcCEeCccCH
Confidence 4567888899 689999999998 899999999999999999999999 99999999999998876532
Q ss_pred ccCCCcceeeEEEEEEEccCCCe----EEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
.. ..++++|+||.+..+ +.++.-+... .++.+.+.+ ........||+||+||
T Consensus 74 ~~------~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~lS~G~kqr 144 (293)
T COG1131 74 AK------VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED---KANKKVRTLSGGMKQR 144 (293)
T ss_pred HH------HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch---hhCcchhhcCHHHHHH
Confidence 21 567899999976432 2222111100 011111111 0122234599999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
+.++.++ +++|.++++|+| .-....+++++++...+
T Consensus 145 l~ia~aL-~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 145 LSIALAL-LHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186 (293)
T ss_pred HHHHHHH-hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 9999998 999999999954 56666777777776655
No 73
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=7.3e-21 Score=173.57 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=107.1
Q ss_pred CceeeccCcch----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING------------LERPTSGSVLVDGTDLTL 71 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEccc
Confidence 45677777655 7999999998 999999999999999999999999 899999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------h------HHhhhhHHHHHhcCcccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------Q------SLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~ 274 (327)
.+.... ...++.++++||.+.. ++.|+..+... ...... . .+..........||+||+||
T Consensus 72 ~~~~~~--~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (233)
T cd03258 72 LSGKEL--RKARRRIGMIFQHFNLLSSRTVFENVALPLE-IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQR 148 (233)
T ss_pred CCHHHH--HHHHhheEEEccCcccCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHH
Confidence 432110 0124678999997532 22222211100 000000 0 01111111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 149 v~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 188 (233)
T cd03258 149 VGIARAL-ANNPKVLLCDEATSALDPETTQSILALLRDINR 188 (233)
T ss_pred HHHHHHH-hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455666667766644
No 74
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.4e-20 Score=163.09 Aligned_cols=133 Identities=18% Similarity=0.314 Sum_probs=101.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+ .
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~g~~~~~~~-~ 69 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG------------LLKPDSGEIKVLGKDIKKEP-E 69 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEcccch-H
Confidence 455666776667899999998 999999999999999999999999 88999999999998876433 1
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCC-ccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~-~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
. .+..++|++|++.. +.. ...+++ . ||+||+||+.+++++ +.+|.++++|||
T Consensus 70 ~-----~~~~i~~~~q~~~~-------~~~~tv~~~~-----~---------LS~G~~qrv~laral-~~~p~illlDEP 122 (173)
T cd03230 70 E-----VKRRIGYLPEEPSL-------YENLTVRENL-----K---------LSGGMKQRLALAQAL-LHDPELLILDEP 122 (173)
T ss_pred h-----hhccEEEEecCCcc-------ccCCcHHHHh-----h---------cCHHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 1 35679999996311 111 111111 1 999999999999999 999999999965
Q ss_pred ------HHHHHHHHHHHHHHH
Q 020346 295 ------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 ------~r~~~~~~ll~e~~~ 309 (327)
...+...++++++.+
T Consensus 123 t~~LD~~~~~~l~~~l~~~~~ 143 (173)
T cd03230 123 TSGLDPESRREFWELLRELKK 143 (173)
T ss_pred ccCCCHHHHHHHHHHHHHHHH
Confidence 355555666666644
No 75
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=9.4e-21 Score=174.03 Aligned_cols=154 Identities=15% Similarity=0.241 Sum_probs=107.8
Q ss_pred CceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINR------------LIEPTSGEIFIDGEDIREQDP 70 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCeEcCcCCh
Confidence 4567778876 67899999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC-------HhHHhh--------hhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT-------KQSLAQ--------TFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~-------~~~l~~--------~~~~~~~~LSgGq~q~~ 275 (327)
.. .+..++|+||.+.. ++.++..+... ..... ..++.. ........||+||+||+
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv 144 (242)
T cd03295 71 VE-----LRRKIGYVIQQIGLFPHMTVEENIALVPK-LLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRV 144 (242)
T ss_pred HH-----hhcceEEEccCccccCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHH
Confidence 21 34578999997522 22233222100 00000 001011 11111234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 145 ~laral-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 183 (242)
T cd03295 145 GVARAL-AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ 183 (242)
T ss_pred HHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 355566666666644
No 76
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=1.5e-20 Score=164.42 Aligned_cols=133 Identities=19% Similarity=0.283 Sum_probs=101.2
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+ ..+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~g~~~~~~~ 70 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG------------LLRPTSGRVRLDGADISQWD 70 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCeEEECCEEcccCC
Confidence 4566777764 45899999998 999999999999999999999999 89999999999999876554
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
... .++.+++++|++.. +.....+++ ||+||+||+.+++++ +.+|+++++|+
T Consensus 71 ~~~-----~~~~i~~~~q~~~~-------~~~tv~~~l---------------LS~G~~qrv~la~al-~~~p~~lllDE 122 (173)
T cd03246 71 PNE-----LGDHVGYLPQDDEL-------FSGSIAENI---------------LSGGQRQRLGLARAL-YGNPRILVLDE 122 (173)
T ss_pred HHH-----HHhheEEECCCCcc-------ccCcHHHHC---------------cCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 322 35678899985311 111111111 999999999999999 99999999996
Q ss_pred H------HHHHHHHHHHHHHHH
Q 020346 294 W------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 294 ~------~r~~~~~~ll~e~~~ 309 (327)
| ...+.+.++++++..
T Consensus 123 Pt~~LD~~~~~~l~~~l~~~~~ 144 (173)
T cd03246 123 PNSHLDVEGERALNQAIAALKA 144 (173)
T ss_pred CccccCHHHHHHHHHHHHHHHh
Confidence 5 344455556665543
No 77
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.7e-21 Score=186.32 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=103.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|+++|.++...+
T Consensus 20 l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG------------l~~p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG------------FEQPTAGQIMLDGVDLSHVP 87 (377)
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECCCCC
Confidence 44567788887777899999998 899999999999999999999999 99999999999999886543
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|++|++. .++.|+..+.... ++.+.+..+.+..+. .|||||+||
T Consensus 88 ~-------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~---~LSgGq~QR 157 (377)
T PRK11607 88 P-------YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH---QLSGGQRQR 157 (377)
T ss_pred H-------HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---hCCHHHHHH
Confidence 2 3567999999853 3444544332110 011111222233333 399999999
Q ss_pred ccccccccccCCceEEcccH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~ 294 (327)
+++++++ +.+|.++++|+|
T Consensus 158 VaLARAL-~~~P~lLLLDEP 176 (377)
T PRK11607 158 VALARSL-AKRPKLLLLDEP 176 (377)
T ss_pred HHHHHHH-hcCCCEEEEeCC
Confidence 9999999 999999999965
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=4.8e-21 Score=179.62 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=108.2
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 6 ~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~ 73 (274)
T PRK13647 6 EVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG------------IYLPQRGRVKVMGREVNAEN 73 (274)
T ss_pred EEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCceEEEECCEECCCCC
Confidence 4567778885 456999999998 999999999999999999999999 89999999999999875443
Q ss_pred ccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
... .++.++|++|++.. ++.++..+... . ++.+......+..+ ..|||||+|
T Consensus 74 ~~~-----~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---~~LSgG~~q 145 (274)
T PRK13647 74 EKW-----VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP---YHLSYGQKK 145 (274)
T ss_pred HHH-----HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh---hhCCHHHHH
Confidence 221 45679999997521 22222222100 0 00011111112222 349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|+++++|+| .-...+.+++.++..
T Consensus 146 rv~laraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 186 (274)
T PRK13647 146 RVAIAGVL-AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN 186 (274)
T ss_pred HHHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 455566667766654
No 79
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.3e-20 Score=172.86 Aligned_cols=157 Identities=11% Similarity=0.147 Sum_probs=108.0
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 5 TAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG------------IVPRDAGNIIIDDEDISLLPL 72 (241)
T ss_pred EEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCCH
Confidence 3456777787778999999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
.. ..+..+++++|.+.. ++.|+..+.......... .+ +..........||+||+||+.+
T Consensus 73 ~~----~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 73 HA----RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred HH----HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHH
Confidence 11 124568999997532 233332221100000000 01 1111111223499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (241)
T PRK10895 149 ARAL-AANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185 (241)
T ss_pred HHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999 999999999965 344455566666644
No 80
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.80 E-value=1.4e-20 Score=168.54 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=106.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~- 69 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG------------LSPPLAGRVLLNGGPLDFQRD- 69 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEecccccH-
Confidence 456777887778899999998 999999999999999999999999 899999999999988654321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------ccccCHhHHhhhhHHHHHhcCcccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
..++.+++++|.+.. ++.|+..+.... ++.+......+. ....||+||+||+++++++
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~LS~G~~qrl~laral- 140 (201)
T cd03231 70 -----SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR---PVAQLSAGQQRRVALARLL- 140 (201)
T ss_pred -----HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC---chhhCCHHHHHHHHHHHHH-
Confidence 145678999986432 222222211100 011111111111 1234999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|+++|+|+| ...+...+++.++..
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 173 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999965 455555666666543
No 81
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.1e-21 Score=171.57 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=105.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +| +++|+|+||+|||||+++|+| +++|++|+|+++|.++...+ .
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~-~ 68 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT------------LTPPSSGTIRIDGQDVLKQP-Q 68 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhC------------CCCCCccEEEECCCccccch-H
Confidence 456777777777999999998 78 999999999999999999999 89999999999998775433 1
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------h------HHhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------Q------SLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
. .++.+++++|++.. ++.|+..+... ...... . .+..........||+||+||+.++
T Consensus 69 ~-----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 142 (211)
T cd03264 69 K-----LRRRIGYLPQEFGVYPNFTVREFLDYIAW-LKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142 (211)
T ss_pred H-----HHhheEEecCCCcccccCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHH
Confidence 1 45678999997532 22222211100 000000 0 111111112234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+++ +.+|.++++|+| ...+.+.++++++.
T Consensus 143 ~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 143 QAL-VGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 999 999999999965 45566666776664
No 82
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.80 E-value=8.6e-21 Score=170.83 Aligned_cols=149 Identities=20% Similarity=0.289 Sum_probs=102.9
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~----- 65 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG------------LLKPTSGSIRVFGKPLEK----- 65 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCCEEEECCccHHH-----
Confidence 45667777677899999998 999999999999999999999999 889999999999987641
Q ss_pred CCcceeeEEEEEEEccCCC------eEEeCcccCCcc-------ccccCHhHHhhhh-----HH----HHHhcCcccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG------YLADTPGFNQPS-------LLKVTKQSLAQTF-----PE----IKEMLKANEPAK 274 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~------~i~Dtpg~~~~~-------l~~~~~~~l~~~~-----~~----~~~~LSgGq~q~ 274 (327)
.++.++|++|++.. ++.|+..+.... ............. ++ ....|||||+||
T Consensus 66 -----~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 140 (213)
T cd03235 66 -----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQR 140 (213)
T ss_pred -----HHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHH
Confidence 34568999987532 222222111000 0000000111100 11 123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+...+++.++..
T Consensus 141 v~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 180 (213)
T cd03235 141 VLLARAL-VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180 (213)
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999 899999999965 455555666666643
No 83
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.80 E-value=6.8e-21 Score=167.64 Aligned_cols=137 Identities=22% Similarity=0.313 Sum_probs=103.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+..
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G------------~~~~~~G~v~~~g~~~~~~~~~ 69 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG------------LLKPSSGEILLDGKDLASLSPK 69 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCcCCHH
Confidence 345677777667899999998 999999999999999999999999 8999999999999987654322
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
. .+..++|++| .++.+...+.....+ ..||+||+||+++++++ +.+|.++++|+|
T Consensus 70 ~-----~~~~i~~~~q---------------~l~~~gl~~~~~~~~---~~LS~G~~qrl~laral-~~~p~llllDEP~ 125 (180)
T cd03214 70 E-----LARKIAYVPQ---------------ALELLGLAHLADRPF---NELSGGERQRVLLARAL-AQEPPILLLDEPT 125 (180)
T ss_pred H-----HHHHHhHHHH---------------HHHHcCCHhHhcCCc---ccCCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 1 3345777776 222222222222222 33999999999999999 999999999965
Q ss_pred -----HHHHHHHHHHHHHHH
Q 020346 295 -----ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~~ 309 (327)
+-.+...++++++..
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 126 SHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 455666667776654
No 84
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.80 E-value=9.7e-21 Score=171.27 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=105.7
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG------------LDNPTSGEVLFNGQSLSK 71 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEhhh
Confidence 4566777753 45899999998 999999999999999999999999 889999999999998766
Q ss_pred ccccCCCccee-eEEEEEEEccCC----CeEEeCcccCCccccccCH----h---H------HhhhhHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHT-TRHVSLLPLSGG----GYLADTPGFNQPSLLKVTK----Q---S------LAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~t-t~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~~----~---~------l~~~~~~~~~~LSgGq~q 273 (327)
.+.... +.. ++.++|++|.+. .++.|+..+... ...... . + +..........|||||+|
T Consensus 72 ~~~~~~--~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 148 (221)
T TIGR02211 72 LSSNER--AKLRNKKLGFIYQFHHLLPDFTALENVAMPLL-IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQ 148 (221)
T ss_pred cCHhHH--HHHHHhcEEEEecccccCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 542210 001 256899999742 122233222100 000000 0 0 001111112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 149 rv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 189 (221)
T TIGR02211 149 RVAIARAL-VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189 (221)
T ss_pred HHHHHHHH-hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 355555566666643
No 85
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=7.6e-21 Score=183.79 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=108.5
Q ss_pred CceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|+ ...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~G------------l~~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINL------------LERPTSGRVLVDGQDLTA 71 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECCc
Confidence 466777886 356899999998 999999999999999999999999 899999999999998876
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
.+.... +..++.++|+||.+.. ++.|+..+... . ++.+......+.. ...|||||+
T Consensus 72 ~~~~~~--~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---~~~LSgGq~ 146 (343)
T PRK11153 72 LSEKEL--RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY---PAQLSGGQK 146 (343)
T ss_pred CCHHHH--HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC---hhhCCHHHH
Confidence 543210 1135679999997532 22232221100 0 0001111111111 234999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+.+++++ +.+|.++++|+| .....+.++++++..
T Consensus 147 qRv~lAraL-~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 147 QRVAIARAL-ASNPKVLLCDEATSALDPATTRSILELLKDINR 188 (343)
T ss_pred HHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999 999999999955 455666677776644
No 86
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.4e-20 Score=170.28 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=102.7
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~ 70 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG------------LERPTSGEVLVDGEPVTG 70 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECcc
Confidence 4567777866 67899999998 999999999999999999999999 889999999999987642
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhHHhh---------hhHHHHHhcCcccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQSLAQ---------TFPEIKEMLKANEPAK 274 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~l~~---------~~~~~~~~LSgGq~q~ 274 (327)
....++++||.+.. ++.++..+... ...+. ...... ........|||||+||
T Consensus 71 ----------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 139 (220)
T cd03293 71 ----------PGPDRGYVFQQDALLPWLTVLDNVALGLE-LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR 139 (220)
T ss_pred ----------ccCcEEEEecccccccCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH
Confidence 23468999987432 22222111100 00000 000111 0111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+.+++++ +.+|.++++|+| ...+.+.++++++.
T Consensus 140 l~la~al-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~ 178 (220)
T cd03293 140 VALARAL-AVDPDVLLLDEPFSALDALTREQLQEELLDIW 178 (220)
T ss_pred HHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 45555556666653
No 87
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.4e-20 Score=168.80 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=106.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|....+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG------------LARPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEcccchHH
Confidence 456777777777999999998 999999999999999999999999 8899999999999887643321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc------------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
..++++++++.+.. ++.++..+.... ++.+......+. ....||+||+||+.+++
T Consensus 72 ------~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~LS~G~~qrl~la~ 142 (204)
T PRK13538 72 ------YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV---PVRQLSAGQQRRVALAR 142 (204)
T ss_pred ------hhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC---ChhhcCHHHHHHHHHHH
Confidence 34568888876421 222222111100 001111111111 12349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++..
T Consensus 143 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 177 (204)
T PRK13538 143 LW-LTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177 (204)
T ss_pred HH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999965 455566677766643
No 88
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.80 E-value=1e-20 Score=184.08 Aligned_cols=149 Identities=15% Similarity=0.229 Sum_probs=104.7
Q ss_pred cCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 143 s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
.|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.... ..-
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~G------------l~~p~~G~I~i~G~~i~~~~~~~~-~~~ 68 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNR------------LIEPTAGQIFIDGENIMKQSPVEL-REV 68 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhC------------CCCCCceEEEECCEECCcCCHHHH-HHH
Confidence 355667899999998 999999999999999999999999 999999999999999876553220 000
Q ss_pred eeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccccccccccc
Q 020346 222 TTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 222 tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
.++.++|++|.+.. ++.++..+.... ++.+.+....+..|. .|||||+||+.+++++
T Consensus 69 rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---~LSGGq~QRV~lARAL- 144 (363)
T TIGR01186 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---ELSGGMQQRVGLARAL- 144 (363)
T ss_pred HhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---hCCHHHHHHHHHHHHH-
Confidence 15689999997532 333433321100 111111222223333 3999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+.+|.++++|+| .-.+.+++++.++.
T Consensus 145 ~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~ 176 (363)
T TIGR01186 145 AAEPDILLMDEAFSALDPLIRDSMQDELKKLQ 176 (363)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999955 44455555555554
No 89
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=1.9e-20 Score=171.63 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=107.1
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINK------------LEEITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCcCChh
Confidence 456777787777999999998 999999999999999999999999 8899999999999987643211
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------HHhh------hhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------SLAQ------TFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------~l~~------~~~~~~~~LSgGq~q~~~~~ 278 (327)
....++.++|++|.+.. ++.|+..+........... ++.. ........||+||+||+.|+
T Consensus 72 ---~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 72 ---ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred ---HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH
Confidence 01145678999987532 2222222210000000000 0000 01111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 149 ~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (240)
T PRK09493 149 RAL-AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184 (240)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 355555566766643
No 90
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.80 E-value=1e-20 Score=168.71 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=105.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG------------LLRPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCccEEEECCEEcccchHH
Confidence 356677777778999999998 999999999999999999999999 8899999999999987654321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc-----------ccccCHhHHhhhhHHHHHhcCcccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS-----------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
.++.++|++|.... ++.|+..+.... ++.+......+. ....||+||+||+.++++
T Consensus 71 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 71 ------PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL---PAAQLSAGQQRRLALARL 141 (198)
T ss_pred ------hhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC---ChhhcCHHHHHHHHHHHH
Confidence 34678888886421 222222211000 000111111111 123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 142 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 174 (198)
T TIGR01189 142 W-LSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174 (198)
T ss_pred H-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 9 999999999965 35555556666554
No 91
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.80 E-value=8.5e-21 Score=170.68 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=106.0
Q ss_pred CceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|.+ +.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYK------------EELPTSGTIRVNGQDVSDLRG 70 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEcccCCH
Confidence 4567777754 57899999998 999999999999999999999999 889999999999998765431
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
... ...++.+++++|.+.. ++.|+..+... . ++.+......+. ....||+||+||+
T Consensus 71 ~~~--~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~LS~G~~qrv 145 (214)
T cd03292 71 RAI--PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA---LPAELSGGEQQRV 145 (214)
T ss_pred HHH--HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC---ChhhcCHHHHHHH
Confidence 100 0134679999997532 22222211100 0 000011111111 1234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+++++ +.+|+++++|+| ...+.+.++++++..
T Consensus 146 ~laral-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 184 (214)
T cd03292 146 AIARAI-VNSPTILIADEPTGNLDPDTTWEIMNLLKKINK 184 (214)
T ss_pred HHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 455566666666643
No 92
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.80 E-value=2.1e-20 Score=189.95 Aligned_cols=143 Identities=17% Similarity=0.299 Sum_probs=108.9
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.+.++|.+ +++++++++.+ +|++++|+|+||+|||||+|+|+| +++|++|+|.++|.++.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG------------FVDPTEGSIAVNGVPLA 387 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEehh
Confidence 4667889999965 46899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhH--------HHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFP--------EIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~--------~~~~~LSgG 270 (327)
+++... .++++++++|++ ++++.|+..+..+.... ....+.-..+| +-...||||
T Consensus 388 ~~~~~~-----lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 388 DADADS-----WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred hCCHHH-----HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 887544 678899999985 44555554443221110 01111111111 111249999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|+++++||+
T Consensus 463 q~qri~laRal-~~~~~ililDE~ 485 (529)
T TIGR02857 463 QAQRLALARAF-LRDAPLLLLDEP 485 (529)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCc
Confidence 99999999999 999999999965
No 93
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.80 E-value=1.4e-20 Score=197.06 Aligned_cols=143 Identities=17% Similarity=0.305 Sum_probs=110.2
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.++++|.+ +.+++++++.+ +|++++|+|+||||||||+++|+| +|+|++|+|.+||.++.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG------------LYQPTEGSVLLDGVDIR 530 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEhh
Confidence 3567889999963 46899999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhHH--------HHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFPE--------IKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~~--------~~~~LSgG 270 (327)
+++... .++.++++||++ ++++.|+..+..+.... ....+.-..+|+ -...||||
T Consensus 531 ~~~~~~-----lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 531 QIDPAD-----LRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred hCCHHH-----HHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 887654 788999999985 44566666555432111 001111111111 01239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|.++++||+
T Consensus 606 QrQRlalARal-l~~p~iliLDE~ 628 (694)
T TIGR03375 606 QRQAVALARAL-LRDPPILLLDEP 628 (694)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCC
Confidence 99999999999 899999999965
No 94
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-20 Score=172.73 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=106.6
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.
T Consensus 7 ~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 7 QCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG------------LDTPTSGDVIFNGQPMS 74 (233)
T ss_pred EEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEcC
Confidence 34567777753 46899999998 999999999999999999999999 88999999999999886
Q ss_pred cccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----hHHh---------hhhHHHHHhcCccccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----QSLA---------QTFPEIKEMLKANEPA 273 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----~~l~---------~~~~~~~~~LSgGq~q 273 (327)
..+.... .....+.++|++|++.. ++.++..+... ...... ..+. .........|||||+|
T Consensus 75 ~~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 152 (233)
T PRK11629 75 KLSSAAK-AELRNQKLGFIYQFHHLLPDFTALENVAMPLL-IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQ 152 (233)
T ss_pred cCCHHHH-HHHHhccEEEEecCcccCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 6542210 00012568999997421 22232221000 000000 0000 1111112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 153 rl~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 153 RVAIARAL-VNNPRLVLADEPTGNLDARNADSIFQLLGELNR 193 (233)
T ss_pred HHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 899999999955 455666677776643
No 95
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=9.4e-21 Score=169.31 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=106.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~v~~~g~~~~~~~~- 70 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG------------LLNPEKGEILFERQSIKKDLC- 70 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeeEEECCCccccCHH-
Confidence 466777887778999999998 999999999999999999999999 889999999999987753211
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCC-ccccccCHhHHhh------hhHHHHHhcCcccccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQ-PSLLKVTKQSLAQ------TFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~-~~l~~~~~~~l~~------~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
..++.++|++|... .++.|+..+.. .........++.. ........||+||+||+++++++ +.
T Consensus 71 -----~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral-~~ 144 (200)
T PRK13540 71 -----TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW-MS 144 (200)
T ss_pred -----HHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHH-hc
Confidence 14567899998642 22333322210 0000000011111 00111234999999999999999 99
Q ss_pred CCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|.++++|+| ...+...++++++..
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~ 175 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRA 175 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999965 455566666666543
No 96
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.1e-20 Score=185.74 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=118.9
Q ss_pred CceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.+.+.+.|.+. +++.++++++ +|+.++|||+||||||||+|+|+| +.+|++|+|.+||++..+++.
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G------------~~~~~~G~I~vng~~l~~l~~ 390 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG------------FLAPTQGEIRVNGIDLRDLSP 390 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhC------------cCCCCCceEEECCccccccCH
Confidence 34788888776 8999999998 899999999999999999999999 999999999999999999987
Q ss_pred cCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh------HHhhhhH----------HHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ------SLAQTFP----------EIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~------~l~~~~~----------~~~~~LSgGq~q~~ 275 (327)
.. ++++++|++|.+ .+++.|+..+..+...+-+.. .+.+..+ |--..|||||+||+
T Consensus 391 ~~-----~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 391 EA-----WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred HH-----HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 65 789999999986 456667777666543221111 1111111 11123999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ ++.+.+.+.||| +.-++..+.+.++.+
T Consensus 466 aLARAl-l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~ 504 (559)
T COG4988 466 ALARAL-LSPASLLLLDEPTAHLDAETEQIILQALQELAK 504 (559)
T ss_pred HHHHHh-cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh
Confidence 999999 888999999965 455555555555543
No 97
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.80 E-value=1.5e-20 Score=197.31 Aligned_cols=143 Identities=15% Similarity=0.239 Sum_probs=109.6
Q ss_pred hcCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 134 TWGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 134 ~~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.+.++.++++|. ++.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+||.++.+
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG------------FFQARSGEILLNGFSLKD 540 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCcEEEECCEEHHH
Confidence 356788999996 467899999998 899999999999999999999999 999999999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccC-CccccccCHh------HHh---hhhHH-----H---HHhcCcc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFN-QPSLLKVTKQ------SLA---QTFPE-----I---KEMLKAN 270 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~-~~~l~~~~~~------~l~---~~~~~-----~---~~~LSgG 270 (327)
++... .+++++++||++ ++++.|+..+. .+....-+.. .+. ..+|. + ...||||
T Consensus 541 ~~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 541 IDRHT-----LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred cCHHH-----HHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 87654 788999999985 44555665543 1211100000 010 11111 0 1239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|.++++||+
T Consensus 616 QrQRialARal-l~~p~iliLDE~ 638 (708)
T TIGR01193 616 QKQRIALARAL-LTDSKVLILDES 638 (708)
T ss_pred HHHHHHHHHHH-hhCCCEEEEeCc
Confidence 99999999999 999999999965
No 98
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1e-20 Score=177.75 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=108.1
Q ss_pred CCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13650 6 EVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG------------LLEAESGQIIIDGDLLTE 73 (279)
T ss_pred EEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEECCc
Confidence 45677788853 35899999998 999999999999999999999999 999999999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
.+... .++.++|++|++. .++.|+..+.... ++.+......+.. ...|||||
T Consensus 74 ~~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---~~~LSgGq 145 (279)
T PRK13650 74 ENVWD-----IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE---PARLSGGQ 145 (279)
T ss_pred CcHHH-----HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC---cccCCHHH
Confidence 43221 4567999999752 1223333221100 0001111111111 23499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+.+++|+ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 146 ~qrv~lAral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 146 KQRVAIAGAV-AMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999955 455566666766654
No 99
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.80 E-value=1.4e-20 Score=172.28 Aligned_cols=152 Identities=12% Similarity=0.177 Sum_probs=105.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTR------------LYVAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCEEcccCChh
Confidence 456677777777999999998 999999999999999999999999 8899999999999887654321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----hHHhhhh---------HHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----QSLAQTF---------PEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----~~l~~~~---------~~~~~~LSgGq~q~~~~~ 278 (327)
..+.+++++|.+.. ++.++..+... ...... ....+.. ......|||||+||+.++
T Consensus 72 ------~~~~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 72 ------ALARLGVVFQQPTLDLDLSVRQNLRYHAA-LHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred ------hhhhEEEeCCCCCCcccCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 23478999997532 22222211100 000000 0001111 111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+++ +.+|.++++|+| ...+.+.+++.++.
T Consensus 145 ral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 145 RAL-LHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred HHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 999 999999999965 45555556666664
No 100
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.1e-20 Score=162.12 Aligned_cols=132 Identities=20% Similarity=0.348 Sum_probs=100.6
Q ss_pred CceeeccCcch--hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+. .+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|+++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G------------~~~~~~G~i~~~g~~~~~~~ 70 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR------------LYDPTSGEILIDGVDLRDLD 70 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCCEEEECCEEhhhcC
Confidence 45666777654 7899999998 999999999999999999999999 89999999999999876544
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
... .++.+++++|.+. + +.....+ .+ ||+||+||+.+++++ +.+|+++++|+
T Consensus 71 ~~~-----~~~~i~~~~~~~~--~-----~~~t~~e------------~l---LS~G~~~rl~la~al-~~~p~llllDE 122 (171)
T cd03228 71 LES-----LRKNIAYVPQDPF--L-----FSGTIRE------------NI---LSGGQRQRIAIARAL-LRDPPILILDE 122 (171)
T ss_pred HHH-----HHhhEEEEcCCch--h-----ccchHHH------------Hh---hCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 222 3456888888531 1 1111111 11 999999999999999 99999999996
Q ss_pred H------HHHHHHHHHHHHHH
Q 020346 294 W------ERYQYYFQLLDEIR 308 (327)
Q Consensus 294 ~------~r~~~~~~ll~e~~ 308 (327)
| ...+.+.+++.++.
T Consensus 123 P~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 123 ATSALDPETEALILEALRALA 143 (171)
T ss_pred CCcCCCHHHHHHHHHHHHHhc
Confidence 5 34555556666553
No 101
>PRK10908 cell division protein FtsE; Provisional
Probab=99.79 E-value=1.1e-20 Score=171.26 Aligned_cols=157 Identities=13% Similarity=0.237 Sum_probs=105.9
Q ss_pred CceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++| ....+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~i~~~~~ 71 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG------------IERPSAGKIWFSGHDITRLKN 71 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcccCCh
Confidence 45666777 5567899999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh-------HHhhh------hHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ-------SLAQT------FPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~-------~l~~~------~~~~~~~LSgGq~q~~~~ 277 (327)
.. .+..++.++|++|.+.. ++.|+..+... ....... ++.+. .......||+||+||+.+
T Consensus 72 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 72 RE--VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI-IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred hH--HHHHHhheEEEecCccccccccHHHHHHhHHH-hcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHH
Confidence 11 00134678999997532 22222211100 0001100 00000 011123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (222)
T PRK10908 149 ARAV-VNKPAVLLADEPTGNLDDALSEGILRLFEEFNR 185 (222)
T ss_pred HHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999 999999999965 345556666666643
No 102
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=2.2e-20 Score=192.26 Aligned_cols=141 Identities=13% Similarity=0.225 Sum_probs=107.9
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.+||.++..+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG------------YYPLTEGEIRLDGRPLSSL 408 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCceEEECCEEhhhC
Confidence 567888888864 56899999998 999999999999999999999999 9999999999999999888
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---------hHHhhhhHH--------HHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---------QSLAQTFPE--------IKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---------~~l~~~~~~--------~~~~LSgGq~ 272 (327)
+... .+++++++||++ ++++.|+..+... ..+-+. .+.-...|+ -...|||||+
T Consensus 409 ~~~~-----l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~-~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 409 SHSV-----LRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred CHHH-----HHhheEEEccCCccccchHHHHHHhCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 7654 788999999985 3445555544431 111011 111111110 0123999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++++++ +.+|.++++|||
T Consensus 483 QRialARaL-l~~~~illlDEp 503 (592)
T PRK10790 483 QLLALARVL-VQTPQILILDEA 503 (592)
T ss_pred HHHHHHHHH-HhCCCEEEEeCC
Confidence 999999999 999999999965
No 103
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.79 E-value=2.5e-20 Score=169.35 Aligned_cols=157 Identities=15% Similarity=0.226 Sum_probs=107.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc-----cccccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF-----EPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~-----~p~~G~i~~~g~~v~ 210 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| ++ +|++|+|+++|.++.
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR------------LNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hcccccCCCCCeEEEECCEEhh
Confidence 456778887778999999998 999999999999999999999999 77 899999999999876
Q ss_pred cccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcc--ccc---c--CHhHHhh------hhHHH--HHhcCcccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPS--LLK---V--TKQSLAQ------TFPEI--KEMLKANEP 272 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~--l~~---~--~~~~l~~------~~~~~--~~~LSgGq~ 272 (327)
..+.. ....+++++|++|++..+ +.|+..+.... ... . ...++.+ ..... ...|||||+
T Consensus 71 ~~~~~---~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 71 DLDVD---VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred hcchH---HHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHH
Confidence 54310 011356799999975332 22222111000 000 0 0001111 11111 145999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+++++++ +.+|.++++|+| ...+...+++.++..
T Consensus 148 qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 189 (227)
T cd03260 148 QRLCLARAL-ANEPEVLLLDEPTSALDPISTAKIEELIAELKK 189 (227)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh
Confidence 999999999 899999999965 455556666666644
No 104
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1e-20 Score=169.90 Aligned_cols=150 Identities=16% Similarity=0.239 Sum_probs=103.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.. .
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~---~ 67 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------------IILPDSGEVLFDGKPLDI---A 67 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCCchhH---H
Confidence 456677777777899999998 999999999999999999999999 889999999999987643 1
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhH---------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQS---------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~---------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.+..+++++|.+.. ++.|+..+... ..... ... +..........||+||+||+.|+
T Consensus 68 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 68 ------ARNRIGYLPEERGLYPKMKVIDQLVYLAQ-LKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred ------HHccEEEeccCCcCCcCCcHHHHHHHHHH-HcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence 34578999987522 22222111000 00000 000 00001111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.++++++..
T Consensus 141 ~al-~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~ 176 (210)
T cd03269 141 AAV-IHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176 (210)
T ss_pred HHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 355555566666543
No 105
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.79 E-value=3e-20 Score=171.19 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=107.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 5 EVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL------------LEQPEAGTIRVGDITIDTARS 72 (250)
T ss_pred EEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEcccccc
Confidence 3566777887778999999998 999999999999999999999999 889999999999998754321
Q ss_pred cC---CCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhh---------hHHHHHhcCcccccc
Q 020346 215 KS---GRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQT---------FPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~---~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~---------~~~~~~~LSgGq~q~ 274 (327)
.. ......++.++++||.+.. ++.|+..+........... ..... .......|||||+||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 00 0001134578999997522 2223322110000000000 00000 011123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++|+|+| ...+...++++++..
T Consensus 153 v~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 192 (250)
T PRK11264 153 VAIARAL-AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ 192 (250)
T ss_pred HHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 9999999 899999999965 345555566666643
No 106
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=1.8e-20 Score=200.29 Aligned_cols=156 Identities=19% Similarity=0.321 Sum_probs=120.2
Q ss_pred hcCCceeeccCcch---hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 134 ~~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.+.|+++.|+|..+ .+++++++.+ +|++++|||+|||||||++++|.+ +|+|++|+|++||.++
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R------------fydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR------------FYDPTSGEVLIDGEDI 417 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCceEEEcCccc
Confidence 36789999999765 5889999998 899999999999999999999999 9999999999999999
Q ss_pred ccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhH---Hhh------hhHHHH--------HhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQS---LAQ------TFPEIK--------EMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~---l~~------~~~~~~--------~~LSg 269 (327)
..+..+. .+..+++|.|+| +.++.++..+..+....-+..+ ++. .+|+-. ..|||
T Consensus 418 ~~~~~~~-----lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 418 RNLNLKW-----LRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred hhcchHH-----HHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 9887655 778999999986 5566677777665422111111 111 111111 12999
Q ss_pred cccccccccccccccCCceEEccc------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGD------WERYQYYFQLLDEI 307 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~ 307 (327)
||+||+++|+++ +.+|.++++|+ ++.-...++.|+..
T Consensus 493 GQKQRIAIARal-v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 493 GQKQRIAIARAL-VRNPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred HHHHHHHHHHHH-HhCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 999999999999 99999999994 45555565556544
No 107
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=3.2e-21 Score=175.01 Aligned_cols=161 Identities=15% Similarity=0.200 Sum_probs=113.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
.+.+..+|+.-.+++++++.+ +|++++||||||||||||+|+|.| +|+|++|+|.++|+++...+..
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG------------~~~P~~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG------------FYKPSSGTVIFRGRDITGLPPH 74 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc------------cccCCCceEEECCcccCCCCHH
Confidence 456778899999999999998 999999999999999999999999 9999999999999999998876
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCc-------ccc-----------------ccCHhHHhhhhHHHHHhcCccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQP-------SLL-----------------KVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~-------~l~-----------------~~~~~~l~~~~~~~~~~LSgGq 271 (327)
........+-++.....+++++.|+...... .++ .++.-.+.+...+....||+||
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 5322223333333323345666666433211 000 0000111222222334599999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++++.+++|+ ..+|.++++|+| .-.+...++++++++.
T Consensus 155 qR~LEIArAL-a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 155 QRRLEIARAL-ATQPKLLLLDEPAAGLNPEETEELAELIRELRDR 198 (250)
T ss_pred hHHHHHHHHH-hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999 999999999976 3444555666666553
No 108
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.79 E-value=2.3e-20 Score=191.54 Aligned_cols=140 Identities=14% Similarity=0.271 Sum_probs=107.8
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.+||+++..
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTR------------FYDIDEGEILLDGHDLRD 409 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCceEEECCEEhhh
Confidence 567888999964 56999999998 999999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------------hhHH--------HHHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------------TFPE--------IKEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------------~~~~--------~~~~LS 268 (327)
++... .++.++|+||++ ++++.|+..+..+. ..+.+++.. .+|+ -...||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS 482 (582)
T PRK11176 410 YTLAS-----LRNQVALVSQNVHLFNDTIANNIAYARTE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482 (582)
T ss_pred cCHHH-----HHhhceEEccCceeecchHHHHHhcCCCC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence 87554 678899999985 44555555543211 011111111 1110 012389
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+||+++++++ +.+|.++|+|||
T Consensus 483 GGqrQRi~LARal-l~~~~ililDEp 507 (582)
T PRK11176 483 GGQRQRIAIARAL-LRDSPILILDEA 507 (582)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEECc
Confidence 9999999999999 999999999965
No 109
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.1e-20 Score=171.79 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=107.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR------------LIDPTEGSILIDGVDIKTID 71 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEhhhcC
Confidence 34567777887777999999998 999999999999999999999999 88999999999999876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcccc--ccCHhHHhhh-------hHHHHHhcCccccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLL--KVTKQSLAQT-------FPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~--~~~~~~l~~~-------~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
... .++.+++++|++.. .+.++..+...... .....++... .......|||||+||+.+++++
T Consensus 72 ~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 72 VID-----LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hHH-----hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 222 35678999997532 11122111100000 0000011100 0111234999999999999999
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|.++++|+| ...+.+.+++.++..
T Consensus 147 -~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 147 -ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred -hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 899999999965 344555566666543
No 110
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=5.1e-20 Score=172.15 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=106.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.... .
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~~-~ 70 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG------------LLRPQKGAVLWQGKPLDYSK-R 70 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCccEEEECCEEccccc-C
Confidence 567788888778999999998 899999999999999999999999 89999999999999874211 1
Q ss_pred CCCcceeeEEEEEEEccCCCeEE-----eCcccCCccccccCHh-------HHhhh------hHHHHHhcCccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLA-----DTPGFNQPSLLKVTKQ-------SLAQT------FPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~-----Dtpg~~~~~l~~~~~~-------~l~~~------~~~~~~~LSgGq~q~~~~ 277 (327)
. ....++.++|+||++...+. ++..+.... ...... .+... .......|||||+||+.+
T Consensus 71 ~--~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 71 G--LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN-LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred C--HHHHHhheEEEeeChhhccccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHH
Confidence 0 01134679999997532111 111110000 000000 00000 000123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| .....+.++++++..
T Consensus 148 araL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 184 (271)
T PRK13638 148 AGAL-VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184 (271)
T ss_pred HHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999 999999999965 455566667766653
No 111
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.79 E-value=1.1e-18 Score=147.59 Aligned_cols=134 Identities=31% Similarity=0.380 Sum_probs=102.1
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhH
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (327)
..++++|++++|+++..|..+. ..+.+++.... .++|+++|+||+|+.+++....|...+++.+++.+.+|..+...
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~- 84 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA- 84 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc-
Confidence 3578999999999998876544 36788875432 58899999999999887766677777877778888888765432
Q ss_pred HHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEE
Q 020346 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (327)
Q Consensus 151 ~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~ 230 (327)
+++++|+||+|||||+|.|.+.. ...++...+ ++++..++.
T Consensus 85 ----------~~~~~G~~~vGKstlin~l~~~~-------------------------~~~~~~~~~----~~~~~~~~~ 125 (141)
T cd01857 85 ----------TIGLVGYPNVGKSSLINALVGKK-------------------------KVSVSATPG----KTKHFQTIF 125 (141)
T ss_pred ----------EEEEECCCCCCHHHHHHHHhCCC-------------------------ceeeCCCCC----cccceEEEE
Confidence 79999999999999999999832 112333344 455566777
Q ss_pred ccCCCeEEeCcccCCc
Q 020346 231 LSGGGYLADTPGFNQP 246 (327)
Q Consensus 231 q~~~~~i~Dtpg~~~~ 246 (327)
.+.+.+++||||+..|
T Consensus 126 ~~~~~~i~DtpG~~~p 141 (141)
T cd01857 126 LTPTITLCDCPGLVFP 141 (141)
T ss_pred eCCCEEEEECCCcCCC
Confidence 7777899999998643
No 112
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=3.1e-20 Score=190.70 Aligned_cols=142 Identities=16% Similarity=0.235 Sum_probs=109.1
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.++++|.+ +.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g------------~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR------------AWDPQQGEILLNGQPIA 405 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEhh
Confidence 3667889999964 46899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhHH--------HHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFPE--------IKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~~--------~~~~LSgG 270 (327)
+++... .+++++++||++ ++++.|+..+..+...+ ....+.... |+ -...||||
T Consensus 406 ~~~~~~-----~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 406 DYSEAA-----LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred hCCHHH-----HHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 887554 678899999986 44555665554322111 010111011 11 11239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++++ +.+|.++++||+
T Consensus 480 qrqRialARal-l~~~~ililDE~ 502 (574)
T PRK11160 480 EQRRLGIARAL-LHDAPLLLLDEP 502 (574)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCC
Confidence 99999999999 999999999965
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.79 E-value=2.2e-20 Score=169.82 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=106.6
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.
T Consensus 8 ~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 8 EVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG------------LDDGSSGEVSLVGQPLH 75 (228)
T ss_pred EEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCeeEEECCEEcc
Confidence 35667777764 24899999998 999999999999999999999999 89999999999999876
Q ss_pred cccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANE 271 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq 271 (327)
..+.... .....+.+++++|.+.. ++.|+..+... . +..+...+..+.. ...||+||
T Consensus 76 ~~~~~~~-~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LS~Ge 151 (228)
T PRK10584 76 QMDEEAR-AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL---PAQLSGGE 151 (228)
T ss_pred cCCHHHH-HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC---hhhCCHHH
Confidence 5432110 00013568999987521 22233221100 0 0001111111111 23499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 152 ~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 194 (228)
T PRK10584 152 QQRVALARAF-NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194 (228)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999 899999999965 455666677766644
No 114
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.1e-20 Score=175.04 Aligned_cols=156 Identities=18% Similarity=0.292 Sum_probs=107.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 4 RTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFAR------------LLTPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhC------------CcCCCCcEEEECCEEhHHCCH
Confidence 3567778888778999999998 999999999999999999999999 889999999999988765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc----ccccC---HhHHhhhh---------HHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS----LLKVT---KQSLAQTF---------PEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----l~~~~---~~~l~~~~---------~~~~~~LSgGq~q~ 274 (327)
.. ..+.++++||+... ++.|+..+.... ..... ........ ......|||||+||
T Consensus 72 ~~-----~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 146 (255)
T PRK11231 72 RQ-----LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQR 146 (255)
T ss_pred HH-----HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHH
Confidence 21 34568999987522 222222211000 00000 00011100 11122399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 147 v~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~ 186 (255)
T PRK11231 147 AFLAMVL-AQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186 (255)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455556666666643
No 115
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.5e-20 Score=176.67 Aligned_cols=156 Identities=14% Similarity=0.203 Sum_probs=108.4
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G------------~~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG------------LLLPEAGTITVGGMVLSE 73 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEECCc
Confidence 345677888863 46999999998 999999999999999999999999 889999999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCccccccCHh-------------HHhhhhHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q 273 (327)
.+... ..+.++|++|++. .++.|+..+.... ...... .+..........|||||+|
T Consensus 74 ~~~~~-----~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q 147 (279)
T PRK13635 74 ETVWD-----VRRQVGMVFQNPDNQFVGATVQDDVAFGLEN-IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQ 147 (279)
T ss_pred CcHHH-----HhhheEEEEeCHHHhcccccHHHHHhhhHhh-CCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHH
Confidence 43222 3467999999752 1233332221000 000100 0100011112249999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.|++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 148 rv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 148 RVAIAGVL-ALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 455566666666654
No 116
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.8e-20 Score=174.75 Aligned_cols=157 Identities=16% Similarity=0.223 Sum_probs=108.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+
T Consensus 12 l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 12 FALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR------------HQPPSEGEILLDAQPLESWS 79 (265)
T ss_pred EEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCCEEEECCEehhhCC
Confidence 44667788887778999999998 999999999999999999999999 89999999999999876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc----ccccC---H---hHHhhh--hHH----HHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS----LLKVT---K---QSLAQT--FPE----IKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----l~~~~---~---~~l~~~--~~~----~~~~LSgGq~q 273 (327)
... .++.+++++|.... ++.|+..+.... ..... . ..+... +++ ....|||||+|
T Consensus 80 ~~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 154 (265)
T PRK10575 80 SKA-----FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQ 154 (265)
T ss_pred HHH-----HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHH
Confidence 322 34578999987422 222222211000 00000 0 011111 011 11239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|+++|+|+| .-.+.+.+++.++..
T Consensus 155 rv~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 195 (265)
T PRK10575 155 RAWIAMLV-AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 (265)
T ss_pred HHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 344555566666543
No 117
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.79 E-value=2.1e-20 Score=165.52 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=99.0
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++.. .... .....
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~-~~~~--~~~~~ 67 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG------------LLRPQSGAVLIDGEPLDY-SRKG--LLERR 67 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceeEEECCEEccc-cccc--hHHHH
Confidence 4456899999998 999999999999999999999999 889999999999988742 1110 01235
Q ss_pred EEEEEEEccCCC-----eEEeCcccCCccccccCH-------h------HHhhhhHHHHHhcCccccccccccccccccC
Q 020346 224 RHVSLLPLSGGG-----YLADTPGFNQPSLLKVTK-------Q------SLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (327)
Q Consensus 224 ~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~e 285 (327)
+.+++++|.+.. ++.|+..+.... ..... . .+..........||+||+||+.+++++ +.+
T Consensus 68 ~~i~~~~q~~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-~~~ 145 (190)
T TIGR01166 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLN-LGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAV-AMR 145 (190)
T ss_pred hhEEEEecChhhccccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHH-hcC
Confidence 678999997521 112221111000 00000 0 011111111234999999999999999 999
Q ss_pred CceEEcccH------HHHHHHHHHHHHHHH
Q 020346 286 PGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 286 p~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|.++|+|+| ...+.+.++++++..
T Consensus 146 p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 175 (190)
T TIGR01166 146 PDVLLLDEPTAGLDPAGREQMLAILRRLRA 175 (190)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999965 455556666666643
No 118
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.79 E-value=8e-21 Score=169.88 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=105.4
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.+.|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.......
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL------------LEKFDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEccccchhh
Confidence 35566777677999999998 999999999999999999999999 88999999999999865432110
Q ss_pred CCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----H---h------HHhhhhHHHHHhcCccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----K---Q------SLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~---~------~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
. .....+.+++++|.+.. ++.|+..+.... .... . . .+..........||+||+||+.+++
T Consensus 70 ~-~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 70 A-SKFRREKLGYLFQNFALIENETVEENLDLGLKY-KKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred H-HHHHHhCeeEEecchhhccCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHH
Confidence 0 00134578999987422 222222110000 0000 0 0 0111111112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++..
T Consensus 148 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 182 (206)
T TIGR03608 148 AI-LKDPPLILADEPTGSLDPKNRDEVLDLLLELND 182 (206)
T ss_pred HH-HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh
Confidence 99 999999999965 455666666766643
No 119
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.79 E-value=6.5e-20 Score=164.09 Aligned_cols=141 Identities=17% Similarity=0.250 Sum_probs=104.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeecccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| + ++|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~p~~G~i~~~g~~~~~~~ 70 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG------------HPKYEVTEGEILFKGEDITDLP 70 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCCCccEEEECCEECCcCC
Confidence 456777787777999999998 999999999999999999999999 5 5899999999999887654
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
.... .+..++|+||.+.. +.. ....+....++ ..||+||+||+.+++++ +.+|.++++|+
T Consensus 71 ~~~~----~~~~i~~v~q~~~~-------~~~-----~~~~~~l~~~~---~~LS~G~~qrv~laral-~~~p~illlDE 130 (200)
T cd03217 71 PEER----ARLGIFLAFQYPPE-------IPG-----VKNADFLRYVN---EGFSGGEKKRNEILQLL-LLEPDLAILDE 130 (200)
T ss_pred HHHH----hhCcEEEeecChhh-------ccC-----ccHHHHHhhcc---ccCCHHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 3211 23458999986321 111 11112112222 34999999999999999 99999999996
Q ss_pred H------HHHHHHHHHHHHHHH
Q 020346 294 W------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 294 ~------~r~~~~~~ll~e~~~ 309 (327)
| ...+.+.+++.++..
T Consensus 131 Pt~~LD~~~~~~l~~~L~~~~~ 152 (200)
T cd03217 131 PDSGLDIDALRLVAEVINKLRE 152 (200)
T ss_pred CCccCCHHHHHHHHHHHHHHHH
Confidence 5 455566666666643
No 120
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.79 E-value=1.7e-20 Score=172.06 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=106.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 5 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 5 LEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG------------KTRPDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred EEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEEECCeecCCCCHH
Confidence 456777787777999999998 999999999999999999999999 8899999999999877654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcc-------c----cccCHhHHhh---------hhHHHHHhcCccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS-------L----LKVTKQSLAQ---------TFPEIKEMLKANE 271 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~-------l----~~~~~~~l~~---------~~~~~~~~LSgGq 271 (327)
.. .++.+++++|.+.. ++.|+..+.... + .......... ........|||||
T Consensus 73 ~~----~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 73 QI----ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQ 148 (242)
T ss_pred HH----HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 11 23468999987522 222322111000 0 0000000010 1111123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+.|++++ +.+|.++++|+| .......++++++.
T Consensus 149 ~qrv~laral-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 190 (242)
T TIGR03411 149 KQWLEIGMLL-MQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190 (242)
T ss_pred HHHHHHHHHH-hcCCCEEEecCCccCCCHHHHHHHHHHHHHHh
Confidence 9999999999 999999999955 45566666776664
No 121
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.79 E-value=1.5e-20 Score=197.63 Aligned_cols=143 Identities=17% Similarity=0.302 Sum_probs=109.8
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.++++|.+ +.+++++++.+ +|++++|+|+||+|||||+|+|.| +++|++|+|.+||+++.
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN------------LYQPTGGQVLLDGVPLV 546 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCEEEECCEEHH
Confidence 567889999964 46899999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhHH-----H---HHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFPE-----I---KEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~~-----~---~~~LSgG 270 (327)
++.... .+++++++||++ ++++.|+..+..+.... ....+.-..+|+ + ...||||
T Consensus 547 ~~~~~~-----lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 547 QYDHHY-----LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred hcCHHH-----HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 887554 678899999986 44555665544322110 000111111110 1 1249999
Q ss_pred ccccccccccccccCCceEEcccHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
|+||+++++++ +.+|.++++||+.
T Consensus 622 QkQRlalARAL-l~~p~ILILDEpT 645 (711)
T TIGR00958 622 QKQRIAIARAL-VRKPRVLILDEAT 645 (711)
T ss_pred HHHHHHHHHHH-hcCCCEEEEEccc
Confidence 99999999999 9999999999663
No 122
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.79 E-value=4e-20 Score=172.75 Aligned_cols=156 Identities=18% Similarity=0.261 Sum_probs=108.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 9 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 9 DMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG------------QIAPDHGEILFDGENIPAMSR 76 (269)
T ss_pred EEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEccccCh
Confidence 4566777787777899999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc----------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS----------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
... ...++.++++||.... ++.|+..+.... ++.+......+.. ...|||||+||
T Consensus 77 ~~~--~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---~~~LSgGq~qr 151 (269)
T PRK11831 77 SRL--YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM---PSELSGGMARR 151 (269)
T ss_pred hhH--HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC---hhhCCHHHHHH
Confidence 110 0134568999997522 222322211000 0000111111111 23499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 152 v~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 191 (269)
T PRK11831 152 AALARAI-ALEPDLIMFDEPFVGQDPITMGVLVKLISELNS 191 (269)
T ss_pred HHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455666667776644
No 123
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.79 E-value=4.4e-20 Score=168.08 Aligned_cols=155 Identities=12% Similarity=0.176 Sum_probs=107.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.+.|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG------------LLPVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEECCCCCHH
Confidence 456777887778999999998 999999999999999999999999 8999999999999887654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----hHHhhhh-------HHHHHhcCcccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----QSLAQTF-------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----~~l~~~~-------~~~~~~LSgGq~q~~~~~~~ 280 (327)
. ...++++|+||++.. ++.|+..+..... .... ..+...+ ......|||||+||+.++++
T Consensus 71 ~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 71 E----RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-PRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred H----HHHhCeEEeccCCcccCCCcHHHHHHHHHHhc-CcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHH
Confidence 1 024578999997532 1112111110000 0000 1111111 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|+++++|+| ...+...+++.++..
T Consensus 146 l-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 179 (230)
T TIGR03410 146 L-VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179 (230)
T ss_pred H-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 9 999999999965 455556666766654
No 124
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=1.2e-20 Score=164.37 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=124.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+..+.++.+|+..++|+++++.. +|.++.|||.||+||||+++||.= +..|++|.|+++|..+.-..
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~------------LE~P~~G~I~v~geei~~k~ 74 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF------------LEKPSAGSIRVNGEEIRLKR 74 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh------------hcCCCCceEEECCeEEEeee
Confidence 44567888999999999999997 999999999999999999999987 88999999999999887665
Q ss_pred ccCCCcc--------eeeEEEEEEEccCCCe--------EEeCccc----CC--------ccccccCHhHHhhhhHHHHH
Q 020346 214 TKSGRGK--------HTTRHVSLLPLSGGGY--------LADTPGF----NQ--------PSLLKVTKQSLAQTFPEIKE 265 (327)
Q Consensus 214 ~~~~~g~--------~tt~~i~~v~q~~~~~--------i~Dtpg~----~~--------~~l~~~~~~~l~~~~~~~~~ 265 (327)
.+.|.-+ ..++..+|++|.++.+ +++.|-. .. ..+..+...+..+.+|..
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~-- 152 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH-- 152 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccc--
Confidence 5444321 3456788999987653 2333321 11 113344445555666766
Q ss_pred hcCccccccccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHhHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREEF 313 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~~~ 313 (327)
|||||+||+++++++ ..||.+.+.| ||+=....++++..+.+.+++
T Consensus 153 -LSGGQQQR~aIARaL-ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 153 -LSGGQQQRVAIARAL-AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred -cCchHHHHHHHHHHH-hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCe
Confidence 999999999999999 8899999988 566667777777777776653
No 125
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.79 E-value=4.2e-20 Score=171.90 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=106.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G------------l~~p~~G~i~~~g~~~~~-- 78 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG------------LETPSAGELLAGTAPLAE-- 78 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEHHH--
Confidence 45678888888778999999998 999999999999999999999999 889999999999876532
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------ccccCHhHHhhhhHHHHHhcCcccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
.++.++|++|.+.. ++.|+..+.... ++.+........ ....|||||+||+.++++
T Consensus 79 --------~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~LSgGqkqrl~lara 147 (257)
T PRK11247 79 --------AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE---WPAALSGGQKQRVALARA 147 (257)
T ss_pred --------hhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC---ChhhCCHHHHHHHHHHHH
Confidence 34568899997532 222332221100 001111111111 123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+ +.+|.++++|+| .....+.+++.++.
T Consensus 148 L-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 180 (257)
T PRK11247 148 L-IHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180 (257)
T ss_pred H-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 9 999999999965 34455556666653
No 126
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.79 E-value=1.2e-20 Score=179.28 Aligned_cols=153 Identities=15% Similarity=0.212 Sum_probs=108.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++.....
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G------------l~~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 4 RVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG------------YLPPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcccChH
Confidence 4567788888888999999998 999999999999999999999999 889999999999988754221
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC-------Hh------HHhhhhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT-------KQ------SLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~-------~~------~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
. .++.++|+||.+.. ++.|+..+... +.... .. ++..........||+||+||+.|
T Consensus 72 -~-----~~~~ig~~~q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 144 (301)
T TIGR03522 72 -E-----VQRNIGYLPEHNPLYLDMYVREYLQFIAG-IYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGL 144 (301)
T ss_pred -H-----HHhceEEecCCCCCCCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHH
Confidence 1 45679999997532 22222211000 00000 00 11111111234599999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
++++ +++|.++++|+| .-.+.+++++++++
T Consensus 145 a~al-~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 145 AQAL-IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred HHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999 999999999955 45555666666663
No 127
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.4e-20 Score=173.83 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=109.2
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+
T Consensus 8 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR------------LMTPAHGHVWLDGEHIQHYA 75 (265)
T ss_pred EEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCcEEEECCEEhhhCC
Confidence 45677888888778999999998 999999999999999999999999 88999999999999876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCC-cc---cc---ccCH---hHHhh------hhHHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ-PS---LL---KVTK---QSLAQ------TFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~-~~---l~---~~~~---~~l~~------~~~~~~~~LSgGq~q 273 (327)
... .+..++|+||++.. .+.|+..+.. .. .. .... .++.. ........||+||+|
T Consensus 76 ~~~-----~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q 150 (265)
T PRK10253 76 SKE-----VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQ 150 (265)
T ss_pred HHH-----HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHH
Confidence 221 34568999997532 2223221110 00 00 0000 00000 001112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +..|.++|+|+| .-.+...+++.++..
T Consensus 151 rv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~ 191 (265)
T PRK10253 151 RAWIAMVL-AQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191 (265)
T ss_pred HHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 455556666666643
No 128
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.1e-20 Score=172.74 Aligned_cols=157 Identities=13% Similarity=0.210 Sum_probs=107.0
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG------------FYKPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred EEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhC------------CcCCCcceEEECCEECCCCCH
Confidence 4567777887778999999998 999999999999999999999999 899999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc---------c------ccccC---HhH---------HhhhhHHH
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP---------S------LLKVT---KQS---------LAQTFPEI 263 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~---------~------l~~~~---~~~---------l~~~~~~~ 263 (327)
... .+..++++||.+.. ++.|+..+... . ..... ... +.......
T Consensus 75 ~~~----~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 75 HQI----ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred HHH----HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 111 23457888887522 22222211000 0 00000 000 11111111
Q ss_pred HHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 264 KEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 264 ~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
...||+||+||+.+++++ +.+|.++|+|+| ...+.+.+++.++.+
T Consensus 151 ~~~LS~G~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 201 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCM-VTQPEILMLDEPAAGLNPKETKELDELIAELRN 201 (255)
T ss_pred hhhCCHHHHHHHHHHHHH-hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh
Confidence 234999999999999999 999999999965 455566666766644
No 129
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.3e-20 Score=174.42 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=107.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+..+|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~G------------l~~p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR------------LIEPTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEccccChh
Confidence 456777788888999999998 999999999999999999999999 8999999999999987654322
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH----hHHhhhh---------HHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK----QSLAQTF---------PEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~----~~l~~~~---------~~~~~~LSgGq~q~~~~~ 278 (327)
.. .....+.++++||.+.. ++.|+..+... ...... ....+.. ......||+||+||+.++
T Consensus 95 ~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 95 EL-RELRRKKISMVFQSFALLPHRTVLENVAFGLE-VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLA 172 (269)
T ss_pred hh-hhhhcCcEEEEecCcccCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHH
Confidence 10 00013468999997532 12222111000 000000 0001000 111123999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 173 ral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 208 (269)
T cd03294 173 RAL-AVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208 (269)
T ss_pred HHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455666666666643
No 130
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.7e-20 Score=169.99 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=106.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.....
T Consensus 4 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 4 QLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNL------------LEMPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEecccccc
Confidence 3567788887778999999998 999999999999999999999999 889999999999987631110
Q ss_pred -cCCCcceeeEEEEEEEccCCC----eEEeCcccCC-----cc-----------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 215 -KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ-----PS-----------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 215 -~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~-----~~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
........++.++|+||.+.. ++.++..+.. .. +..+......+. ....|||||+|
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~LS~G~~q 148 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR---FPLHLSGGQQQ 148 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC---ChhhCCHHHHH
Confidence 000001135678999997532 2222221100 00 000011111111 12349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 149 rv~laral-~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~ 189 (242)
T PRK11124 149 RVAIARAL-MMEPQVLLFDEPTAALDPEITAQIVSIIRELAE 189 (242)
T ss_pred HHHHHHHH-hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999 899999999955 455666667776644
No 131
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.2e-20 Score=176.27 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=107.8
Q ss_pred CCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G------------l~~p~~G~i~~~g~~~ 71 (287)
T PRK13637 4 KIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG------------LLKPTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCccEEEECCEEC
Confidence 35667777753 36899999998 999999999999999999999999 8999999999999988
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCc--c-------------ccccCHh--HHhhhhHHHHHhc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQP--S-------------LLKVTKQ--SLAQTFPEIKEML 267 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~--~-------------l~~~~~~--~l~~~~~~~~~~L 267 (327)
...+... ...++.++|+||++.. ++.|+..+... . ++.+.+. ...+.. ...|
T Consensus 72 ~~~~~~~---~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---~~~L 145 (287)
T PRK13637 72 TDKKVKL---SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS---PFEL 145 (287)
T ss_pred CCcCccH---HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCC---cccC
Confidence 6532110 1145789999997532 22222222100 0 0001110 111111 2349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||||+||+.+++++ +.+|.++|+|+| .....+.++++++..
T Consensus 146 SgGq~qrv~iAraL-~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (287)
T PRK13637 146 SGGQKRRVAIAGVV-AMEPKILILDEPTAGLDPKGRDEILNKIKELHK 192 (287)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999955 455566677777654
No 132
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.79 E-value=8.6e-20 Score=165.54 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=106.0
Q ss_pred CceeeccCcch----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|.+. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~ 71 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG------------LLKPTSGSIIFDGKDLLK 71 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEccc
Confidence 45677777654 6899999998 999999999999999999999999 889999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC------eEEeCcccC--C--ccccccCHh----HHhhhh-------HHHHHhcCcc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG------YLADTPGFN--Q--PSLLKVTKQ----SLAQTF-------PEIKEMLKAN 270 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~------~i~Dtpg~~--~--~~l~~~~~~----~l~~~~-------~~~~~~LSgG 270 (327)
.+... ....++.++|++|.+.. ++.|+..+. . ......... ++...+ ......||||
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 72 LSRRL--RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGG 149 (228)
T ss_pred cchhh--HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHH
Confidence 44210 01145679999997521 122222110 0 000000000 111111 1112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 150 ~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (228)
T cd03257 150 QRQRVAIARAL-ALNPKLLIADEPTSALDVSVQAQILDLLKKLQE 193 (228)
T ss_pred HHHHHHHHHHH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 344555566666543
No 133
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=3.5e-20 Score=198.02 Aligned_cols=140 Identities=19% Similarity=0.344 Sum_probs=113.5
Q ss_pred hcCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 134 ~~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
++.|+.+.|+|.+ ..+++++++.+ +|+++||||||||||||++-+|.+ +|+|++|.|.+||.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR------------fYdp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER------------FYDPDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCCeEEECCccc
Confidence 3678899999975 46899999998 999999999999999999999998 9999999999999999
Q ss_pred ccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh------HHhhhhHHHH--------------Hh
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ------SLAQTFPEIK--------------EM 266 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~------~l~~~~~~~~--------------~~ 266 (327)
..+..+ |.++++++|.|+| +.++.|+..+.... ++.+ +++....-+. ..
T Consensus 1055 k~lnl~-----~LR~~i~lVsQEP~LF~~TIrENI~YG~~~---vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~Q 1126 (1228)
T KOG0055|consen 1055 KDLNLK-----WLRKQIGLVSQEPVLFNGTIRENIAYGSEE---VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQ 1126 (1228)
T ss_pred ccCCHH-----HHHHhcceeccCchhhcccHHHHHhccCCC---CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCc
Confidence 988764 4899999999997 55777777666211 2222 2222222221 13
Q ss_pred cCccccccccccccccccCCceEEcccH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||||+||++||+++ +.+|+++|+|+.
T Consensus 1127 LSGGQKQRIAIARAi-lRnPkILLLDEA 1153 (1228)
T KOG0055|consen 1127 LSGGQKQRIAIARAI-LRNPKILLLDEA 1153 (1228)
T ss_pred CCchHHHHHHHHHHH-HcCCCeeeeecc
Confidence 999999999999999 999999999943
No 134
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.79 E-value=3.9e-20 Score=190.33 Aligned_cols=142 Identities=21% Similarity=0.386 Sum_probs=109.1
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|.+ +.+++++++.+ +|++++|+|+||+|||||+|+|+| +++|++|+|.++|.++.++
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g------------l~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR------------VFDPQSGRILIDGTDIRTV 402 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEEhhhC
Confidence 567788999964 56899999998 999999999999999999999999 9999999999999999888
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhHH-----H---HHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFPE-----I---KEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~~-----~---~~~LSgGq~ 272 (327)
+... .+++++|+||++ ++++.|+..+..+.... ....+.-..+|+ + ...|||||+
T Consensus 403 ~~~~-----~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 403 TRAS-----LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred CHHH-----HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 7554 678899999986 44556665554322110 111111111110 1 123999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++++++ +.+|.++|+|||
T Consensus 478 QRialARal-l~~~~iliLDEp 498 (588)
T PRK13657 478 QRLAIARAL-LKDPPILILDEA 498 (588)
T ss_pred HHHHHHHHH-hcCCCEEEEeCC
Confidence 999999999 999999999965
No 135
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=5.2e-20 Score=172.57 Aligned_cols=153 Identities=15% Similarity=0.216 Sum_probs=106.4
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG------------LLRPQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEECCcccc
Confidence 466777884 456999999998 999999999999999999999999 889999999999998765431
Q ss_pred cCCCcceeeEEEEEEEccCCC-----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
.. ..++.+++++|++.. ++.|+..+.... ++.+.+....+.. ...||+||+||
T Consensus 72 ~~----~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---~~~LS~G~~qr 144 (274)
T PRK13644 72 LQ----GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS---PKTLSGGQGQC 144 (274)
T ss_pred HH----HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC---cccCCHHHHHH
Confidence 11 135679999997532 222222111000 0000111111111 23399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++|+|+| .....+.++++++..
T Consensus 145 v~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 184 (274)
T PRK13644 145 VALAGIL-TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE 184 (274)
T ss_pred HHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999 999999999965 355556666666654
No 136
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.5e-20 Score=174.29 Aligned_cols=156 Identities=13% Similarity=0.203 Sum_probs=107.8
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|. ++.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++..
T Consensus 8 l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG------------LLKPQSGEIKIDGITISK 75 (271)
T ss_pred EEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEecCc
Confidence 34567788884 457899999998 999999999999999999999999 899999999999998754
Q ss_pred ccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCccccccCHhH-------------HhhhhHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPSLLKVTKQS-------------LAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~l~~~~~~~-------------l~~~~~~~~~~LSgGq~q 273 (327)
.+... .++.++|++|++. .++.|+..+... ...+.... +..........||+||+|
T Consensus 76 ~~~~~-----~~~~i~~v~q~~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 149 (271)
T PRK13632 76 ENLKE-----IRKKIGIIFQNPDNQFIGATVEDDIAFGLE-NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQ 149 (271)
T ss_pred CCHHH-----HhcceEEEEeCHHHhcCcccHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHH
Confidence 33211 4567999998742 122222211100 00011110 000111112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++|+|+| ...+...++++++..
T Consensus 150 rl~laral-~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~ 190 (271)
T PRK13632 150 RVAIASVL-ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK 190 (271)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 455566666666644
No 137
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.79 E-value=2e-20 Score=173.77 Aligned_cols=154 Identities=17% Similarity=0.220 Sum_probs=106.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~p~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG------------ELSPDSGEVRLNGRPLADWSPA 72 (258)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEEcccCCHH
Confidence 456777887778999999998 999999999999999999999999 8899999999999887654332
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCcccc----cc--CHhHHhh------hhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLL----KV--TKQSLAQ------TFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~----~~--~~~~l~~------~~~~~~~~LSgGq~q~~~~~~ 279 (327)
. ..+.++|++|++.. ++.|+..+...... .. ....+.. ........|||||+||+.+++
T Consensus 73 ~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 73 E-----LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred H-----hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHH
Confidence 1 34578999997532 22333222110000 00 0000000 001112349999999999999
Q ss_pred cccc------cCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 280 CLHL------GEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 280 ~~h~------~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
++ + .+|.++++|+| ...+.+.++++++.
T Consensus 148 al-~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (258)
T PRK13548 148 VL-AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA 187 (258)
T ss_pred HH-hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 98 6 58999999955 45566667776664
No 138
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.7e-20 Score=173.80 Aligned_cols=155 Identities=17% Similarity=0.280 Sum_probs=106.5
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+
T Consensus 5 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~ 72 (277)
T PRK13652 5 ETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG------------ILKPTSGSVLIRGEPITKEN 72 (277)
T ss_pred EEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECCcCC
Confidence 3567788885 456899999998 999999999999999999999999 89999999999999875433
Q ss_pred ccCCCcceeeEEEEEEEccCCCeE-----EeCcccCCccccccCHh-------------HHhhhhHHHHHhcCccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYL-----ADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i-----~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~ 275 (327)
... ....+++++|++...+ .|+..+... ...+... .+..........||+||+||+
T Consensus 73 ~~~-----~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl 146 (277)
T PRK13652 73 IRE-----VRKFVGLVFQNPDDQIFSPTVEQDIAFGPI-NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRV 146 (277)
T ss_pred HHH-----HHhheEEEecCcccccccccHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH
Confidence 211 4567899999753211 121111000 0001110 000000111224999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+++|+ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 147 ~laraL-~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~ 185 (277)
T PRK13652 147 AIAGVI-AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE 185 (277)
T ss_pred HHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 355556666666654
No 139
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.3e-19 Score=158.16 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=101.3
Q ss_pred CCceeeccCcchh--hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 136 GYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
..+.++.+|..+. +++++++.+ +|+.++++||||||||||+|+++| +.+|..|+|.+||.++..-
T Consensus 5 ~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG------------f~~P~~G~i~l~~r~i~gP 72 (259)
T COG4525 5 NVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG------------FVTPSRGSIQLNGRRIEGP 72 (259)
T ss_pred ehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhc------------CcCcccceEEECCEeccCC
Confidence 3456778887665 899999998 899999999999999999999999 9999999999999998765
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHhH---Hh----------hhhHHHHHhcCccccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQS---LA----------QTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~~---l~----------~~~~~~~~~LSgGq~q~~ 275 (327)
+. .-+.|+|++.. .++|+..|.... ..+.+.. .+ .......-.|||||+||+
T Consensus 73 ga----------ergvVFQ~~~LlPWl~~~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRv 141 (259)
T COG4525 73 GA----------ERGVVFQNEALLPWLNVIDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRV 141 (259)
T ss_pred Cc----------cceeEeccCccchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHH
Confidence 43 23567887644 456776654321 1122211 11 111111223999999999
Q ss_pred cccccccccCCceEEcccHH
Q 020346 276 SFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~~ 295 (327)
.+++++ .-||+.+++|+|.
T Consensus 142 GiARAL-a~eP~~LlLDEPf 160 (259)
T COG4525 142 GIARAL-AVEPQLLLLDEPF 160 (259)
T ss_pred HHHHHh-hcCcceEeecCch
Confidence 999999 8899999999763
No 140
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.78 E-value=1.6e-20 Score=192.04 Aligned_cols=143 Identities=19% Similarity=0.322 Sum_probs=109.2
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g------------l~~~~~G~I~i~g~~i~~ 398 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPR------------FYEPDSGQILLDGHDLAD 398 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCeEEECCEeHHh
Confidence 567888999864 56899999998 999999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCc-ccc---------ccCHhHHhhhhH--------HHHHhcCcc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQP-SLL---------KVTKQSLAQTFP--------EIKEMLKAN 270 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~-~l~---------~~~~~~l~~~~~--------~~~~~LSgG 270 (327)
++... .+.+++|+||++ ++++.|+..+..+ ... .....+....+| +-...||||
T Consensus 399 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 399 YTLAS-----LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred cCHHH-----HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 87554 678899999986 4455555554432 111 111111111111 111249999
Q ss_pred ccccccccccccccCCceEEcccHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
|+||+++++|+ +.+|.++++|||.
T Consensus 474 qrQRiaLARal-l~~~~illLDEpt 497 (571)
T TIGR02203 474 QRQRLAIARAL-LKDAPILILDEAT 497 (571)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCcc
Confidence 99999999999 9999999999663
No 141
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=8.2e-20 Score=163.77 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=105.1
Q ss_pred CCceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc---ccccceeecce
Q 020346 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~ 207 (327)
.++.+.+.|. +..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~~~~G~i~i~g~ 72 (202)
T cd03233 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN------------RTEGNVSVEGDIHYNGI 72 (202)
T ss_pred EEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcc------------cCCCCCCcceEEEECCE
Confidence 4566777775 346899999998 999999999999999999999999 777 89999999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~ 287 (327)
++...+.. .++.++|++|....+ .. ....+++....... .......||+||+||+.+++++ +.+|.
T Consensus 73 ~~~~~~~~------~~~~i~~~~q~~~~~--~~----~tv~~~l~~~~~~~-~~~~~~~LS~Ge~qrl~laral-~~~p~ 138 (202)
T cd03233 73 PYKEFAEK------YPGEIIYVSEEDVHF--PT----LTVRETLDFALRCK-GNEFVRGISGGERKRVSIAEAL-VSRAS 138 (202)
T ss_pred ECccchhh------hcceEEEEecccccC--CC----CcHHHHHhhhhhhc-cccchhhCCHHHHHHHHHHHHH-hhCCC
Confidence 87654321 456789999863111 00 11112221110000 1122344999999999999999 99999
Q ss_pred eEEcccH------HHHHHHHHHHHHHHH
Q 020346 288 CVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 288 ~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++|+| ...+.+.++++++..
T Consensus 139 llllDEPt~~LD~~~~~~~~~~l~~~~~ 166 (202)
T cd03233 139 VLCWDNSTRGLDSSTALEILKCIRTMAD 166 (202)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999955 455566666766644
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.78 E-value=7.2e-20 Score=169.14 Aligned_cols=160 Identities=14% Similarity=0.171 Sum_probs=107.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMT------------LEPIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEccccccc
Confidence 456777887778999999998 999999999999999999999999 8899999999999987654200
Q ss_pred CC--------CcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCcc
Q 020346 216 SG--------RGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKAN 270 (327)
Q Consensus 216 ~~--------~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgG 270 (327)
.+ .....++.+++++|.+.. ++.|+..+.......+.. .+ +..........||+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 00 000135678999997422 222222211000000000 00 001111112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+++++++ +.+|.++++|+| .-...+.++++++..
T Consensus 151 ~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (252)
T TIGR03005 151 QQQRVAIARAL-AMRPKVMLFDEVTSALDPELVGEVLNVIRRLAS 194 (252)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 345555566666644
No 143
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.78 E-value=2.8e-20 Score=169.25 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=107.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 9 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS------------LISPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred EEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCeEEECCEEcCcCCH
Confidence 3566777787778999999998 999999999999999999999999 889999999999988765432
Q ss_pred cCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc-cccC---HhHHhhhh-------HHHHHhcCcccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL-LKVT---KQSLAQTF-------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l-~~~~---~~~l~~~~-------~~~~~~LSgGq~q~~~~~~~ 280 (327)
.. .+..+++++|++.. .+.|+..+..... .... ..++...+ ......||+||+||+.|+++
T Consensus 77 ~~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 77 EI-----YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred HH-----HHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 21 34678999987532 2222221100000 0000 00111110 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|.++|+|+| .-.+.+.++++++..
T Consensus 152 l-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (225)
T PRK10247 152 L-QFMPKVLLLDEITSALDESNKHNVNEIIHRYVR 185 (225)
T ss_pred H-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9 999999999965 355566666666643
No 144
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.78 E-value=3.7e-20 Score=162.58 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=100.6
Q ss_pred CceeeccCcch--hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|... .+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~g~~~~~~- 69 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG------------DLKPQQGEITLDGVPVSDL- 69 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCEEEECCEEHHHH-
Confidence 45666777654 6899999998 999999999999999999999999 8899999999999887544
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
... ..+.++|++|.+. +.. ....+++ ...||+||+||+.+++++ +.+|.++++|+
T Consensus 70 ~~~-----~~~~i~~~~q~~~--~~~-----~tv~~~i------------~~~LS~G~~qrv~laral-~~~p~~lllDE 124 (178)
T cd03247 70 EKA-----LSSLISVLNQRPY--LFD-----TTLRNNL------------GRRFSGGERQRLALARIL-LQDAPIVLLDE 124 (178)
T ss_pred HHH-----HHhhEEEEccCCe--eec-----ccHHHhh------------cccCCHHHHHHHHHHHHH-hcCCCEEEEEC
Confidence 111 3557899998531 111 1111221 344999999999999999 99999999996
Q ss_pred H------HHHHHHHHHHHHH
Q 020346 294 W------ERYQYYFQLLDEI 307 (327)
Q Consensus 294 ~------~r~~~~~~ll~e~ 307 (327)
| ...+.+.+++.++
T Consensus 125 P~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 125 PTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 5 3445555555555
No 145
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.6e-20 Score=169.54 Aligned_cols=157 Identities=13% Similarity=0.218 Sum_probs=108.1
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 7 SFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG------------DPRATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCCceEEECCEecCCCCH
Confidence 4567777887778999999998 999999999999999999999999 899999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccccc--CHhHHhhhhH-------HHHHhcCccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLLKV--TKQSLAQTFP-------EIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~~~--~~~~l~~~~~-------~~~~~LSgGq~q~~~~~~ 279 (327)
.. ...+.+++++|+... ++.|+..+... ..... ....+...++ .....||+||+||+.+++
T Consensus 75 ~~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 75 AK----IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HH----HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 11 134568999987532 22222211100 00000 0011111111 112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++.+
T Consensus 151 al-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 185 (237)
T PRK11614 151 AL-MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185 (237)
T ss_pred HH-HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999965 455556666666644
No 146
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.78 E-value=7.7e-20 Score=167.56 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=105.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeecccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| + ++|++|+|+++|.++...+
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG------------HPSYEVTSGTILFKGQDLLELE 70 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCcceEEECCEecCCCC
Confidence 466778887778999999998 999999999999999999999999 6 4799999999999876544
Q ss_pred ccCCCcceeeEEEEEEEccCCCe----EEeCcccCCcccc------ccCH----hHHhhh-----h-HHH----HH-hcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPGFNQPSLL------KVTK----QSLAQT-----F-PEI----KE-MLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~~~~l~------~~~~----~~l~~~-----~-~~~----~~-~LS 268 (327)
.... .+..+++++|.+..+ +.++..+...... .... ..+... + +.. .. .||
T Consensus 71 ~~~~----~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 146 (243)
T TIGR01978 71 PDER----ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFS 146 (243)
T ss_pred HHHh----hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcC
Confidence 2211 234588899875321 1111111000000 0000 001100 0 111 12 399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+||+.|++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 147 ~G~~qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (243)
T TIGR01978 147 GGEKKRNEILQMA-LLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192 (243)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999965 355566667776644
No 147
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.78 E-value=2.6e-20 Score=172.59 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=109.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~~ 70 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG------------ALRPDAGTVDLAGVDLHGLSR 70 (256)
T ss_pred eEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCCCEEEECCEEcccCCH
Confidence 3567778888778999999998 999999999999999999999999 889999999999998766543
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---cccc----CHhHHhhhhH-----H----HHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---LLKV----TKQSLAQTFP-----E----IKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---l~~~----~~~~l~~~~~-----~----~~~~LSgGq~q~ 274 (327)
.. .++.++|++|.+. .++.++..+.... .... ....+..... + ....||+||+||
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 145 (256)
T TIGR03873 71 RA-----RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQR 145 (256)
T ss_pred HH-----HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 22 3456899998753 2233333221100 0000 0001111111 1 122399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 146 l~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (256)
T TIGR03873 146 VHVARAL-AQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185 (256)
T ss_pred HHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh
Confidence 9999999 999999999965 456666677777654
No 148
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=2.3e-20 Score=174.66 Aligned_cols=130 Identities=19% Similarity=0.307 Sum_probs=105.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
-+++++++.+ .|++.+|+|-||||||||+++|.+ +++|++|+|+++|.++..++.+.- ....++.+
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr------------Liept~G~ilv~g~di~~~~~~~L-r~~Rr~~~ 108 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR------------LIEPTRGEILVDGKDIAKLSAAEL-RELRRKKI 108 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc------------cCCCCCceEEECCcchhcCCHHHH-HHHHhhhh
Confidence 3678888887 899999999999999999999999 999999999999999998876542 22345678
Q ss_pred EEEEccCCC----eEEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc
Q 020346 227 SLLPLSGGG----YLADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (327)
Q Consensus 227 ~~v~q~~~~----~i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~ 287 (327)
+||+|.++. ++.|+.+|... .++.+.+....+.+|.. |||||+||+.+|+++ ..+|+
T Consensus 109 sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e---LSGGMqQRVGLARAl-a~~~~ 184 (386)
T COG4175 109 SMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNE---LSGGMQQRVGLARAL-ANDPD 184 (386)
T ss_pred hhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCccc---ccchHHHHHHHHHHH-ccCCC
Confidence 999998644 66777776532 13334445555666666 999999999999999 99999
Q ss_pred eEEcccH
Q 020346 288 CVVKGDW 294 (327)
Q Consensus 288 ~~v~~~~ 294 (327)
++++|++
T Consensus 185 IlLMDEa 191 (386)
T COG4175 185 ILLMDEA 191 (386)
T ss_pred EEEecCc
Confidence 9999954
No 149
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=3.4e-20 Score=163.44 Aligned_cols=138 Identities=15% Similarity=0.210 Sum_probs=98.3
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++| +++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+...
T Consensus 8 ~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 8 RGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG------------LRPPASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred eccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCccCHHH
Confidence 4444555 789999998 899999999999999999999999 89999999999998876543211
Q ss_pred CCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH--
Q 020346 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-- 294 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~-- 294 (327)
. .++.++|++|++.. +.+. ...+..+... +.. .||+||+||+++++++ +.+|.++++|+|
T Consensus 72 ~----~~~~i~~~~q~~~~-----~~~~----~~~t~~e~l~-~~~---~LS~G~~qrl~la~al-~~~p~llllDEP~~ 133 (182)
T cd03215 72 A----IRAGIAYVPEDRKR-----EGLV----LDLSVAENIA-LSS---LLSGGNQQKVVLARWL-ARDPRVLILDEPTR 133 (182)
T ss_pred H----HhCCeEEecCCccc-----Cccc----CCCcHHHHHH-HHh---hcCHHHHHHHHHHHHH-ccCCCEEEECCCCc
Confidence 1 34568999985310 0111 0111111111 111 1999999999999999 999999999955
Q ss_pred ----HHHHHHHHHHHHHHH
Q 020346 295 ----ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 ----~r~~~~~~ll~e~~~ 309 (327)
...+...+++.++..
T Consensus 134 ~LD~~~~~~l~~~l~~~~~ 152 (182)
T cd03215 134 GVDVGAKAEIYRLIRELAD 152 (182)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 455566666666643
No 150
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=6.8e-20 Score=170.10 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=102.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++....
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~-- 69 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG------------FVPYQHGSITLDGKPVEGPG-- 69 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCC--
Confidence 456777787777899999998 999999999999999999999999 88999999999998875321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hHHhh------hhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QSLAQ------TFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~l~~------~~~~~~~~LSgGq~q~~~~~ 278 (327)
..+++++|.+.. ++.++..+... ...+.. .++.. ........|||||+||+.++
T Consensus 70 --------~~~~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~la 140 (255)
T PRK11248 70 --------AERGVVFQNEGLLPWRNVQDNVAFGLQ-LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA 140 (255)
T ss_pred --------CcEEEEeCCCccCCCCcHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 237889987532 22222211100 000000 00000 00111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+++ +.+|.++++|+| .....+.++++++
T Consensus 141 ral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 141 RAL-AANPQLLLLDEPFGALDAFTREQMQTLLLKL 174 (255)
T ss_pred HHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999 999999999965 3555555666665
No 151
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.2e-19 Score=163.09 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=101.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++.. .++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~g------------l~~~~~G~i~~~g~~~~~~~~- 67 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAG------------FETPQSGRVLINGVDVTAAPP- 67 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEEcCcCCH-
Confidence 456667776543 2888887 999999999999999999999999 899999999999998765432
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCc-cc--cccCHhHHhhh---------hHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP-SL--LKVTKQSLAQT---------FPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~-~l--~~~~~~~l~~~---------~~~~~~~LSgGq~q~~~~~~ 279 (327)
..+.+++++|++.. ++.|+..+... .. .......+... .......||+||+||+.+++
T Consensus 68 ------~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 68 ------ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALAR 141 (211)
T ss_pred ------hHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHH
Confidence 23568999997532 22233221110 00 00000011110 11112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| .-.+.+.+++.++..
T Consensus 142 al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 142 VL-VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred HH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 99 899999999965 355556666666543
No 152
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=4.9e-20 Score=166.44 Aligned_cols=151 Identities=14% Similarity=0.117 Sum_probs=106.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...
T Consensus 12 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~i~~~- 78 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG------------LLHVESGQIQIDGKTATRG- 78 (214)
T ss_pred EEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC------------CCCCCCeeEEECCEEccch-
Confidence 34567778887778999999998 999999999999999999999999 8999999999999877532
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccC----Ccc--------ccccCHhHHhhhhHHHHHhcCccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFN----QPS--------LLKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~----~~~--------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
. ..+.+++++|.+.. ++.|+..+. ... +..+......+. ....||+||+||+.+
T Consensus 79 --~-----~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~LS~G~~qrv~l 148 (214)
T PRK13543 79 --D-----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDT---LVRQLSAGQKKRLAL 148 (214)
T ss_pred --h-----hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccC---ChhhCCHHHHHHHHH
Confidence 1 23468899886422 122221110 000 000111111111 123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 149 aral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 185 (214)
T PRK13543 149 ARLW-LSPAPLWLLDEPYANLDLEGITLVNRMISAHLR 185 (214)
T ss_pred HHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999 999999999955 455666677776644
No 153
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.78 E-value=5.7e-20 Score=166.14 Aligned_cols=155 Identities=16% Similarity=0.257 Sum_probs=105.6
Q ss_pred CCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+||||+|||||+++|+| +.+|++|+|+++|.++...
T Consensus 4 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~ 71 (220)
T cd03245 4 EFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG------------LYKPTSGSVLLDGTDIRQL 71 (220)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCeEEECCEEhHHC
Confidence 35667777764 46899999998 999999999999999999999999 8899999999999887644
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc---------cccCHhHHhhhhHH--------HHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL---------LKVTKQSLAQTFPE--------IKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l---------~~~~~~~l~~~~~~--------~~~~LSgGq~ 272 (327)
+... .++.+++++|.+.. .+.|+..+..... ..+...++.+.++. ....|||||+
T Consensus 72 ~~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 72 DPAD-----LRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred CHHH-----HHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 3221 34578999997532 1222221111000 00111111111110 0125999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+.+++++ +.+|.++|+|+| ...+...++++++.
T Consensus 147 qrl~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 147 QAVALARAL-LNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999 899999999966 34455556666553
No 154
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.3e-19 Score=173.64 Aligned_cols=161 Identities=18% Similarity=0.232 Sum_probs=107.6
Q ss_pred cCCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 135 WGYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.+
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~G------------l~~p~~G~I~i~g~~ 89 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG------------LIKSKYGTIQVGDIY 89 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEEECCEE
Confidence 456778888864 25899999998 999999999999999999999999 999999999999988
Q ss_pred ecccc-----------ccCCCcceeeEEEEEEEccCCCeEE-----eCcccCCccccccCHhHH-------hhh------
Q 020346 209 VGEVS-----------TKSGRGKHTTRHVSLLPLSGGGYLA-----DTPGFNQPSLLKVTKQSL-------AQT------ 259 (327)
Q Consensus 209 v~~~s-----------~~~~~g~~tt~~i~~v~q~~~~~i~-----Dtpg~~~~~l~~~~~~~l-------~~~------ 259 (327)
+.... .........++.+++++|++...+. ++..+..... ....... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~ 168 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDS 168 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChh
Confidence 75420 0000011246789999997532221 2222211000 0111100 000
Q ss_pred -hHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 260 -FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 260 -~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.......|||||+||+++++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL-~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~ 224 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGIL-AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA 224 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHH-HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 0011123999999999999999 999999999965 455555566666543
No 155
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.77 E-value=7.8e-20 Score=167.19 Aligned_cols=153 Identities=17% Similarity=0.267 Sum_probs=104.6
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~ 70 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR------------FYVPENGRVLVDGHDLALAD 70 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCeehHhcC
Confidence 4567777753 46899999998 999999999999999999999999 89999999999998876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--cccc-------CHhHHhhhh--------HHHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--LLKV-------TKQSLAQTF--------PEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--l~~~-------~~~~l~~~~--------~~~~~~LSgGq~q 273 (327)
... .++.++++||++.. ++.|+..+.... ...+ ...++...+ ......|||||+|
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q 145 (237)
T cd03252 71 PAW-----LRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ 145 (237)
T ss_pred HHH-----HhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence 221 35678999997522 222222221110 0000 001111100 0112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+.+++++ +.+|+++|+|+| ...+.+.+++.++
T Consensus 146 rv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 184 (237)
T cd03252 146 RIAIARAL-IHNPRILIFDEATSALDYESEHAIMRNMHDI 184 (237)
T ss_pred HHHHHHHH-hhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999999 899999999965 3445555556555
No 156
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.77 E-value=1.1e-19 Score=164.75 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=105.2
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+.++|++ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~g~~~~~ 71 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG------------LRSVQEGSLKVLGQELYG 71 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEhHh
Confidence 4556666654 56899999997 899999999999999999999999 899999999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------h------HHhhhhHHHHHhcCcccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------Q------SLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~ 274 (327)
.+... ....++.++++||++.. ++.++..+.......+.. . .+..........||+||+||
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr 149 (220)
T TIGR02982 72 ASEKE--LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQR 149 (220)
T ss_pred cCHhH--HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 43211 01145679999987532 222211111000000000 0 01111111123499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| .-.+.+.++++++..
T Consensus 150 v~laral-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~ 189 (220)
T TIGR02982 150 VAIARAL-VHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189 (220)
T ss_pred HHHHHHH-hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555566666543
No 157
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=6.1e-20 Score=204.86 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=110.4
Q ss_pred cCCceeeccCc---chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-------------
Q 020346 135 WGYEPLFCSVE---SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP------------- 197 (327)
Q Consensus 135 ~~~~~~~~s~~---~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p------------- 197 (327)
+.|+.+.|+|. +.++++++++.+ +|+++||||+||||||||+++|+| +|+|
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r------------~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR------------FYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH------------hCCCccccccccccccc
Confidence 66889999995 346999999998 999999999999999999999999 8887
Q ss_pred -----------------------------------------cccceeecceeeccccccCCCcceeeEEEEEEEccC---
Q 020346 198 -----------------------------------------ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG--- 233 (327)
Q Consensus 198 -----------------------------------------~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~--- 233 (327)
++|+|++||.++.+++... .++++++|||++
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~-----lR~~i~~V~Qep~LF 1308 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD-----LRNLFSIVSQEPMLF 1308 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH-----HHhhccEeCCCCccc
Confidence 6999999999999987654 788999999986
Q ss_pred CCeEEeCcccCCccccccCHhHHh------hhhHHHH--------------HhcCccccccccccccccccCCceEEccc
Q 020346 234 GGYLADTPGFNQPSLLKVTKQSLA------QTFPEIK--------------EMLKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 234 ~~~i~Dtpg~~~~~l~~~~~~~l~------~~~~~~~--------------~~LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
++++.|+..+..+.. +.+++. ...+.+. ..|||||+||+++|+++ +.+|.++|+||
T Consensus 1309 ~gTIreNI~~g~~~a---t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL-lr~p~ILLLDE 1384 (1466)
T PTZ00265 1309 NMSIYENIKFGKEDA---TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL-LREPKILLLDE 1384 (1466)
T ss_pred cccHHHHHhcCCCCC---CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 556667766654321 112111 1111111 13999999999999999 99999999995
Q ss_pred H
Q 020346 294 W 294 (327)
Q Consensus 294 ~ 294 (327)
+
T Consensus 1385 a 1385 (1466)
T PTZ00265 1385 A 1385 (1466)
T ss_pred c
Confidence 5
No 158
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.77 E-value=1.6e-19 Score=160.86 Aligned_cols=140 Identities=20% Similarity=0.209 Sum_probs=102.8
Q ss_pred CCceeeccCcc------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cccccceeecc
Q 020346 136 GYEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EPILGSKWFED 206 (327)
Q Consensus 136 ~~~~~~~s~~~------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p~~G~i~~~g 206 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| ++ +|++|+|.++|
T Consensus 5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~G------------l~~~~~~~G~i~~~g 72 (194)
T cd03213 5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG------------RRTGLGVSGEVLING 72 (194)
T ss_pred EEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCCceEEEECC
Confidence 45677777764 57999999998 999999999999999999999999 88 99999999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCC
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP 286 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep 286 (327)
+++... . .++.+++++|++..+ . .....+++.... . ...||+||+||+.+++++ +.+|
T Consensus 73 ~~~~~~---~-----~~~~i~~~~q~~~~~--~----~~t~~~~i~~~~------~-~~~LS~G~~qrv~laral-~~~p 130 (194)
T cd03213 73 RPLDKR---S-----FRKIIGYVPQDDILH--P----TLTVRETLMFAA------K-LRGLSGGERKRVSIALEL-VSNP 130 (194)
T ss_pred EeCchH---h-----hhheEEEccCcccCC--C----CCcHHHHHHHHH------H-hccCCHHHHHHHHHHHHH-HcCC
Confidence 987542 1 456789998853110 0 011112221110 0 115999999999999999 8999
Q ss_pred ceEEcccH------HHHHHHHHHHHHHHH
Q 020346 287 GCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 287 ~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.++++|+| .-.+...++++++..
T Consensus 131 ~illlDEP~~~LD~~~~~~l~~~l~~~~~ 159 (194)
T cd03213 131 SLLFLDEPTSGLDSSSALQVMSLLRRLAD 159 (194)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 99999965 344555566666543
No 159
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.77 E-value=1.6e-19 Score=167.51 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee-----e
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-----V 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~-----v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.+ +
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA------------RLAPDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred EEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCcccccccc
Confidence 4567778887777899999998 999999999999999999999999 899999999999987 5
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCeE------EeCccc-----CCcccccc--CHhHHhhhh-------HHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADTPGF-----NQPSLLKV--TKQSLAQTF-------PEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~i------~Dtpg~-----~~~~l~~~--~~~~l~~~~-------~~~~~~LSg 269 (327)
...+.... ....+..++|++|++...+ .++..+ ........ ...++...+ ......|||
T Consensus 76 ~~~~~~~~-~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 154 (258)
T PRK11701 76 YALSEAER-RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSG 154 (258)
T ss_pred ccCCHHHH-HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCH
Confidence 43321100 0002456899999753111 111110 00000000 000111111 111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||++|++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 155 Gq~qrl~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 199 (258)
T PRK11701 155 GMQQRLQIARNL-VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199 (258)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 899999999965 344555555655543
No 160
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-19 Score=170.87 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=105.1
Q ss_pred CceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++.+.++|.. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNG------------LLQPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc------------CCCCCCcEEEECCEECc
Confidence 5667777753 24899999998 999999999999999999999999 89999999999999875
Q ss_pred cccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCcc--c-------------cccCHh-HHhhhhHHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPS--L-------------LKVTKQ-SLAQTFPEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~--l-------------~~~~~~-~l~~~~~~~~~~LSg 269 (327)
..+... .....++.+++++|++.. ++.|...+.... . +.+.+. .+.... ...|||
T Consensus 72 ~~~~~~-~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---~~~LSg 147 (288)
T PRK13643 72 STSKQK-EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKS---PFELSG 147 (288)
T ss_pred cccccc-cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCC---cccCCH
Confidence 321110 001145679999997522 222222221100 0 000110 011111 234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+++++++ +.+|.++|+|+| .....+.++++++..
T Consensus 148 GqkqrvaiA~aL-~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~ 192 (288)
T PRK13643 148 GQMRRVAIAGIL-AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192 (288)
T ss_pred HHHHHHHHHHHH-HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 344455566666643
No 161
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.77 E-value=7.4e-20 Score=164.17 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=106.7
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|+. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++..
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~ 74 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFR------------FLEAEEGKIEIDGIDIST 74 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCeEEECCEEhHH
Confidence 446777788864 46899999998 999999999999999999999999 899999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCHhHHhhhhH--HHHHhcCccccccccccccccccCC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTKQSLAQTFP--EIKEMLKANEPAKCSFNNCLHLGEP 286 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~~~l~~~~~--~~~~~LSgGq~q~~~~~~~~h~~ep 286 (327)
.+... .+..++|++|++.. ++.++..+.. ......+...+. .-...||+||+||+.+++++ +.+|
T Consensus 75 ~~~~~-----~~~~i~~v~q~~~~~~~tv~~~l~~~~----~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral-~~~p 144 (207)
T cd03369 75 IPLED-----LRSSLTIIPQDPTLFSGTIRSNLDPFD----EYSDEEIYGALRVSEGGLNLSQGQRQLLCLARAL-LKRP 144 (207)
T ss_pred CCHHH-----HHhhEEEEecCCcccCccHHHHhcccC----CCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHH-hhCC
Confidence 44222 35679999997522 2222221110 111111111111 11234999999999999999 8999
Q ss_pred ceEEcccH------HHHHHHHHHHHHH
Q 020346 287 GCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 287 ~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+++++|+| ...+.+.++++++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREE 171 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999965 3445555666554
No 162
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.77 E-value=1e-19 Score=168.65 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=109.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.+.|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~ 73 (257)
T PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF------------LEKPSEGSIVVNGQTINLVR 73 (257)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEccccc
Confidence 34567778887778999999998 999999999999999999999999 88999999999998775422
Q ss_pred ccCC--------CcceeeEEEEEEEccCCC----eEEeCcccCCccccccC-------HhHHhhh------h-HHHHHhc
Q 020346 214 TKSG--------RGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT-------KQSLAQT------F-PEIKEML 267 (327)
Q Consensus 214 ~~~~--------~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~-------~~~l~~~------~-~~~~~~L 267 (327)
...+ ..+..++.++|+||.+.. ++.|+..+......... ..++... . ......|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 1000 001135679999997532 23333322100000000 0011110 0 1112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 154 S~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 200 (257)
T PRK10619 154 SGGQQQRVSIARAL-AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE 200 (257)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999955 455666677777654
No 163
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.77 E-value=6.5e-20 Score=168.95 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=106.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-----ccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~v~ 210 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|+ +|+|+++|.++.
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNR------------MNDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCcCCCCceEEEECCEEcc
Confidence 567778887777999999998 999999999999999999999999 88888 999999999876
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCH-------h------HHh----hhhHHHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTK-------Q------SLA----QTFPEIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~-------~------~l~----~~~~~~~~~LSgG 270 (327)
..+... ...++.++|+||.+.. ++.|+..+.......... . ++. .........||||
T Consensus 72 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 148 (247)
T TIGR00972 72 DKKIDV---VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGG 148 (247)
T ss_pred ccccch---HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHH
Confidence 421100 1135679999997532 122222111000000000 0 000 0011112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++++ +.+|+++++|+| .....+.++++++.+
T Consensus 149 ~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (247)
T TIGR00972 149 QQQRLCIARAL-AVEPEVLLLDEPTSALDPIATGKIEELIQELKK 192 (247)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 899999999965 355556666666643
No 164
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.5e-20 Score=163.52 Aligned_cols=137 Identities=18% Similarity=0.261 Sum_probs=108.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
.+.++.+|+++.+++++++.+ +|++++|+||||||||||+.++++ +.++++|+|+++|.++...+.+
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sR------------L~~~d~G~i~i~g~~~~~~~s~ 71 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSR------------LLKKDSGEITIDGLELTSTPSK 71 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHH------------hccccCceEEEeeeecccCChH
Confidence 456788899999999999998 899999999999999999999999 9999999999999999887765
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCccc-----------------cccCHhHHhhhhHHHHHhcCcccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSL-----------------LKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l-----------------~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++.+.|.+. .++.|-.+|..+.. +.+.+.++.+.+- ..|||||+||
T Consensus 72 ~-----LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL---d~LSGGQrQR 143 (252)
T COG4604 72 E-----LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL---DELSGGQRQR 143 (252)
T ss_pred H-----HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH---Hhcccchhhh
Confidence 4 5666777777652 35567777765431 2223334444443 3499999999
Q ss_pred ccccccccccCCceEEcccH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~ 294 (327)
.-+|..+ ..+.+..++|+|
T Consensus 144 AfIAMVl-aQdTdyvlLDEP 162 (252)
T COG4604 144 AFIAMVL-AQDTDYVLLDEP 162 (252)
T ss_pred hhhheee-eccCcEEEecCc
Confidence 9999766 889999999976
No 165
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.2e-19 Score=165.07 Aligned_cols=155 Identities=20% Similarity=0.315 Sum_probs=106.1
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+||||+|||||+++|+| +.+|++|+|+++|.++...
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~ 70 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMR------------FYDPQKGQILIDGIDIRDI 70 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEeHHHc
Confidence 345677788864 46999999998 999999999999999999999999 8899999999999887654
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc--ccc-------CHhHHhhhhH--------HHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL--LKV-------TKQSLAQTFP--------EIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l--~~~-------~~~~l~~~~~--------~~~~~LSgGq~ 272 (327)
+... .++.++|++|++.. ++.|+..+..... ..+ ......+.++ .....||+||+
T Consensus 71 ~~~~-----~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 71 SRKS-----LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred CHHH-----HhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 3221 45678999997522 2222222111100 000 0111111110 00135999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+.+++++ +.+|+++++|+| ...+.+.+++.++
T Consensus 146 ~rv~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (229)
T cd03254 146 QLLAIARAM-LRDPKILILDEATSNIDTETEKLIQEALEKL 185 (229)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999 999999999965 3444555666555
No 166
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.77 E-value=9.6e-20 Score=186.68 Aligned_cols=142 Identities=17% Similarity=0.340 Sum_probs=108.3
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|.. +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.+||.++.
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g------------l~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR------------FYDPQSGRILLDGVDLR 405 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCEEEECCEEHH
Confidence 567888898864 46899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc---------cCHhHHhhhhH--------HHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK---------VTKQSLAQTFP--------EIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~--------~~~~~LSgG 270 (327)
..+... .+++++++||++ ++++.|+..+..+...+ ....+.-..+| +-...||||
T Consensus 406 ~~~~~~-----~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 406 QLDPAE-----LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred hcCHHH-----HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 776543 677899999986 44555665543322111 11111111111 111239999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++++|+ +.+|+++++|||
T Consensus 481 q~Qrl~laRal-~~~~~ililDEp 503 (576)
T TIGR02204 481 QRQRIAIARAI-LKDAPILLLDEA 503 (576)
T ss_pred HHHHHHHHHHH-HhCCCeEEEeCc
Confidence 99999999999 999999999965
No 167
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4e-20 Score=174.48 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=106.1
Q ss_pred CCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|+. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G------------l~~p~~G~i~~~g~~~ 71 (287)
T PRK13641 4 KFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNA------------LLKPSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEC
Confidence 35667778863 35899999998 999999999999999999999999 8999999999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCHh-------HHhhh-------hHHHHHhcCcc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTKQ-------SLAQT-------FPEIKEMLKAN 270 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~~-------~l~~~-------~~~~~~~LSgG 270 (327)
....... .....+..+++++|++.. ++.|+..+... ....... ++... .......||||
T Consensus 72 ~~~~~~~-~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (287)
T PRK13641 72 TPETGNK-NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPK-NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGG 149 (287)
T ss_pred ccccccc-hHHHHHhceEEEEeChhhhhccchHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHH
Confidence 5321000 001134579999997521 22222221100 0000000 00000 01112249999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+++++|+ +.+|.++|+|+| ...+.+.+++.++.+
T Consensus 150 q~qrl~laral-~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~ 193 (287)
T PRK13641 150 QMRRVAIAGVM-AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK 193 (287)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999955 455666677776643
No 168
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.5e-19 Score=166.45 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=106.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.+
T Consensus 14 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~p~~p~~G~i~~~g~~ 81 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR------------MYELYPEQRAEGEILLDGEN 81 (260)
T ss_pred EEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccccCCCCCcceEEEECCEE
Confidence 44677888887777999999998 999999999999999999999999 664 589999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCH-------hHHhhhh----------HHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTK-------QSLAQTF----------PEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~-------~~l~~~~----------~~~~~~LS 268 (327)
+...... ....+++++|++|++.. ++.|+..+.......... .++.+.+ ......||
T Consensus 82 ~~~~~~~---~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 158 (260)
T PRK10744 82 ILTPKQD---IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLS 158 (260)
T ss_pred ccccccc---hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCC
Confidence 7532110 01145679999997532 222222211000000000 0111111 11122499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|.++|+|+| ...+.+.++++++.
T Consensus 159 ~Gq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 203 (260)
T PRK10744 159 GGQQQRLCIARGI-AIRPEVLLLDEPCSALDPISTGRIEELITELK 203 (260)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 45555666666663
No 169
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.77 E-value=1.1e-19 Score=164.98 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=104.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~~~~~~~~--- 67 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG------------ILRPTSGEIIFDGHPWTRK--- 67 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEecccc---
Confidence 456677777777999999998 999999999999999999999999 8899999999999876421
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCc--ccc--c----cCHhHHhhhhHHHHHhcCccccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SLL--K----VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l~--~----~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
..+.++++||.+.. ++.|+..+... ... . ++...+..........||+||+||+.+++++ +
T Consensus 68 ------~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral-~ 140 (223)
T TIGR03740 68 ------DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIAL-L 140 (223)
T ss_pred ------ccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHH-h
Confidence 12468899886532 22222211000 000 0 0000111111112334999999999999999 9
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+|.++++|+| ...+.+.+++.++..
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 172 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH
Confidence 99999999965 456666677777643
No 170
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.77 E-value=1.1e-19 Score=185.91 Aligned_cols=137 Identities=14% Similarity=0.189 Sum_probs=102.9
Q ss_pred hcCCceeeccCcch-----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 134 TWGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 134 ~~~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
.+.++.+.++|.++ .+++++++.+ +|++++|+||||+|||||+|+|+| +++|++|+|.++|.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g------------~~~p~~G~i~~~g~ 404 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG------------LYIPQEGEILLDGA 404 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCE
Confidence 35678899999642 5899999998 999999999999999999999999 99999999999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------------hhHHH---HHhcCc
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------------TFPEI---KEMLKA 269 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------------~~~~~---~~~LSg 269 (327)
++...+... .+..+++++|++ +.++.++. .+ ....+++.+ ..|+- ...|||
T Consensus 405 ~i~~~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~---~~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 405 AVSADSRDD-----YRDLFSAIFADFHLFDDLIGPDE---GE---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred ECCCCCHHH-----HHhhCcEEccChhhhhhhhhccc---cc---chhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 998776543 567899999974 22232321 00 011111111 01100 134999
Q ss_pred cccccccccccccccCCceEEcccH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+||+++++++ +.+|.++|+||+
T Consensus 474 Gq~qRlalaRal-l~~~~ililDE~ 497 (555)
T TIGR01194 474 GQQKRLALICAW-LEDRPILLFDEW 497 (555)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 999999999999 999999999965
No 171
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.77 E-value=2e-19 Score=167.67 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=105.0
Q ss_pred CceeeccCc---------chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 137 YEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~---------~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
++.+.++|. +..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g 72 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG------------LEKPAQGTVSFRG 72 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECC
Confidence 456666664 356899999998 999999999999999999999999 8999999999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCC------eEEeCcccCCccccccC----Hh---HHhhh-------hHHHHHh
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG------YLADTPGFNQPSLLKVT----KQ---SLAQT-------FPEIKEM 266 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~------~i~Dtpg~~~~~l~~~~----~~---~l~~~-------~~~~~~~ 266 (327)
.++...+.... ...++.++|++|.+.. ++.|+..+.......+. .. ++.+. .......
T Consensus 73 ~~i~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 150 (265)
T TIGR02769 73 QDLYQLDRKQR--RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150 (265)
T ss_pred EEccccCHHHH--HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 98765432110 0134579999997421 11121111000000000 00 11110 0111234
Q ss_pred cCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|||||+||+++++++ +.+|.++++|+| ...+...++++++..
T Consensus 151 LSgGe~qrv~laral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (265)
T TIGR02769 151 LSGGQLQRINIARAL-AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198 (265)
T ss_pred CCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999965 355556666666644
No 172
>PLN03130 ABC transporter C family member; Provisional
Probab=99.77 E-value=1.5e-19 Score=203.42 Aligned_cols=138 Identities=18% Similarity=0.183 Sum_probs=107.8
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.+.++|.. +.+|+++++.+ +|+++||||+||||||||+++|.| +++|++|+|.+||.++.+
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r------------l~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR------------IVELERGRILIDGCDISK 1305 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------cCCCCCceEEECCEeccc
Confidence 568899999964 36999999998 999999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------hhHHHH--------------HhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------TFPEIK--------------EMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------~~~~~~--------------~~LS 268 (327)
++... .+++++++||++ ++++.|+...... .+.+++.+ ..+.+. ..||
T Consensus 1306 i~l~~-----LR~~IsiVpQdp~LF~GTIreNLd~~~~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLS 1376 (1622)
T PLN03130 1306 FGLMD-----LRKVLGIIPQAPVLFSGTVRFNLDPFNE----HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFS 1376 (1622)
T ss_pred CCHHH-----HHhccEEECCCCccccccHHHHhCcCCC----CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCC
Confidence 88665 788999999986 3444444332211 11111111 111111 2499
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+||+++|+++ +.+|.++|+||+
T Consensus 1377 gGQrQrlaLARAL-Lr~p~ILILDEA 1401 (1622)
T PLN03130 1377 VGQRQLLSLARAL-LRRSKILVLDEA 1401 (1622)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 9999999999999 999999999954
No 173
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=6.4e-20 Score=164.88 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=104.0
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++.. .
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~-~- 69 (207)
T PRK13539 4 EGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG------------LLPPAAGTIKLDGGDIDD-P- 69 (207)
T ss_pred EEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEeCcc-h-
Confidence 3466777887777899999998 999999999999999999999999 889999999999987532 1
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc-----------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS-----------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
. .+..++++++... .++.|+..+.... ++.+......... ...||+||+||+.+++
T Consensus 70 --~----~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LS~G~~qrl~la~ 140 (207)
T PRK13539 70 --D----VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLP---FGYLSAGQKRRVALAR 140 (207)
T ss_pred --h----hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCC---hhhcCHHHHHHHHHHH
Confidence 0 3456788876532 1222222111000 0001111111111 2349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++ +.+|.++++|+| ...+.+.+++.++..+
T Consensus 141 al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 141 LL-VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred HH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 99 899999999965 3455556666666443
No 174
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.76 E-value=2e-19 Score=162.11 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=102.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.. .+.++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~- 67 (213)
T TIGR01277 3 LDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAG------------FIEPASGSIKVNDQSHTGLAP- 67 (213)
T ss_pred EEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEcccCCh-
Confidence 4556666653 456888887 999999999999999999999999 899999999999998754321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCC-cccc--ccCHhH---------HhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ-PSLL--KVTKQS---------LAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~-~~l~--~~~~~~---------l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
..+.+++++|.+.. ++.|+..+.. .... ...... +.+........||+||+||+.+++
T Consensus 68 ------~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 141 (213)
T TIGR01277 68 ------YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALAR 141 (213)
T ss_pred ------hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHH
Confidence 34679999997532 3333332210 0000 000001 111111112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| .....+.++++++..
T Consensus 142 al-~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 142 CL-VRPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred HH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 899999999965 455666666766654
No 175
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.3e-19 Score=169.15 Aligned_cols=159 Identities=13% Similarity=0.226 Sum_probs=108.1
Q ss_pred CCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~G------------l~~p~~G~i~~~g~~i 71 (286)
T PRK13646 4 RFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA------------LLKPTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEC
Confidence 35667777853 35999999998 999999999999999999999999 8999999999999988
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCHh-------------HHh-hhhHHHHHhcCcc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTKQ-------------SLA-QTFPEIKEMLKAN 270 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~~-------------~l~-~~~~~~~~~LSgG 270 (327)
...+... ..+..++.++++||++.. ++.|+..+..... .+... .+. .........||||
T Consensus 72 ~~~~~~~-~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 149 (286)
T PRK13646 72 THKTKDK-YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG 149 (286)
T ss_pred ccccccc-hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 6532110 011246789999997521 2223222210000 00100 110 0001112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+++++++ +.+|.++|+|+| .....+.++++++..
T Consensus 150 q~qrv~laraL-~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~ 193 (286)
T PRK13646 150 QMRKIAIVSIL-AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193 (286)
T ss_pred HHHHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999954 455566677777654
No 176
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.9e-19 Score=168.24 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=106.8
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+
T Consensus 7 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~G------------l~~p~~G~i~i~g~~~~~~~ 74 (283)
T PRK13636 7 KVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG------------ILKPSSGRILFDGKPIDYSR 74 (283)
T ss_pred EEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCccEEEECCEECCCCc
Confidence 4567888885 467999999998 999999999999999999999999 89999999999999874211
Q ss_pred ccCCCcceeeEEEEEEEccCCCe-----EEeCcccCCccccccCHhH-------------HhhhhHHHHHhcCccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGY-----LADTPGFNQPSLLKVTKQS-------------LAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~-----i~Dtpg~~~~~l~~~~~~~-------------l~~~~~~~~~~LSgGq~q~~ 275 (327)
.. .+..+..++|+||++... +.|+..+..... ...... +..........||+||+||+
T Consensus 75 ~~---~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl 150 (283)
T PRK13636 75 KG---LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150 (283)
T ss_pred ch---HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHH
Confidence 10 011456799999975321 222221110000 011000 10011111234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+++|+ +.+|.++|+|+| .-.+.+.++++++..
T Consensus 151 ~laraL-~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~ 189 (283)
T PRK13636 151 AIAGVL-VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189 (283)
T ss_pred HHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999955 455556666666644
No 177
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.8e-19 Score=166.17 Aligned_cols=154 Identities=17% Similarity=0.216 Sum_probs=105.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|.++|.++
T Consensus 5 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~i 72 (250)
T PRK14247 5 EIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNR------------LIELYPEARVSGEVYLDGQDI 72 (250)
T ss_pred EEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCCCCceEEEECCEEC
Confidence 4567777887777999999998 999999999999999999999999 666 4799999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--cc--cccC-HhHHhhh-------------hHHHHHhc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SL--LKVT-KQSLAQT-------------FPEIKEML 267 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l--~~~~-~~~l~~~-------------~~~~~~~L 267 (327)
...+... .+..++|+||.+.. ++.|+..+... .. ..-+ ...+... .......|
T Consensus 73 ~~~~~~~-----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14247 73 FKMDVIE-----LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKL 147 (250)
T ss_pred CcCCHHH-----HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccC
Confidence 6543222 45679999997532 33333321100 00 0000 0011110 01112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||||+||+++++++ +.+|.++++|+| ...+...++++++
T Consensus 148 SgG~~qrv~laral-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 148 SGGQQQRLCIARAL-AFQPEVLLADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999 899999999965 3445555666655
No 178
>PLN03232 ABC transporter C family member; Provisional
Probab=99.76 E-value=1.6e-19 Score=202.47 Aligned_cols=138 Identities=21% Similarity=0.187 Sum_probs=107.7
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.+.++|.. +.+|+++++.+ +|+++||||+||||||||+++|.| +++|++|+|.+||.++.+
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r------------l~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR------------IVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCCceEEECCEEhhh
Confidence 568899999953 47999999998 999999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------hhHHH--------------HHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------TFPEI--------------KEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------~~~~~--------------~~~LS 268 (327)
++... .+++++++||++ ++++.|+...... .+.+++.+ ..+.+ -..||
T Consensus 1303 i~~~~-----lR~~i~iVpQdp~LF~gTIr~NL~~~~~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LS 1373 (1495)
T PLN03232 1303 FGLTD-----LRRVLSIIPQSPVLFSGTVRFNIDPFSE----HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFS 1373 (1495)
T ss_pred CCHHH-----HHhhcEEECCCCeeeCccHHHHcCCCCC----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCC
Confidence 88655 788999999986 3344444332211 11111111 11111 12499
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+||+++|+++ +.+|.++|+||+
T Consensus 1374 gGQrQrlaLARAL-Lr~~~ILILDEA 1398 (1495)
T PLN03232 1374 VGQRQLLSLARAL-LRRSKILVLDEA 1398 (1495)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEECC
Confidence 9999999999999 999999999954
No 179
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.6e-19 Score=167.35 Aligned_cols=156 Identities=14% Similarity=0.249 Sum_probs=106.5
Q ss_pred CCceeeccCcc------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 136 GYEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 136 ~~~~~~~s~~~------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
.++.+.++|.+ +.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~i~g~~ 73 (280)
T PRK13633 6 KCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNA------------LLIPSEGKVYVDGLD 73 (280)
T ss_pred EEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEe
Confidence 35677778853 46999999998 999999999999999999999999 899999999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCeE-----EeCcccCCccccccCHh-------------HHhhhhHHHHHhcCcc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYL-----ADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKAN 270 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~i-----~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgG 270 (327)
+...+... ..++.++++||++...+ .|+..+.... ..+... .+..........||+|
T Consensus 74 i~~~~~~~----~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G 148 (280)
T PRK13633 74 TSDEENLW----DIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN-LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGG 148 (280)
T ss_pred ccccccHH----HHhhheEEEecChhhhhccccHHHHHHhhHhh-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHH
Confidence 76432100 13567999999753211 1222221000 001100 0001111112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++++ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 149 ~~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 149 QKQRVAIAGIL-AMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 345555566666643
No 180
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=5e-20 Score=159.33 Aligned_cols=133 Identities=22% Similarity=0.265 Sum_probs=99.1
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
+-.+++++++.+ +|++++||||||+|||||+-.|+| +.+|++|+|.+.|++...+.. +++.....+
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAG------------Ld~~ssGeV~l~G~~L~~ldE-d~rA~~R~~ 88 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG------------LDDPSSGEVRLLGQPLHKLDE-DARAALRAR 88 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhc------------CCCCCCceEEEcCcchhhcCH-HHHHHhhcc
Confidence 345788999987 999999999999999999999999 999999999999999998874 456666788
Q ss_pred EEEEEEccCC----CeEEeCcccCCc---------------cccccCHhHHhhhhHHHHHhcCccccccccccccccccC
Q 020346 225 HVSLLPLSGG----GYLADTPGFNQP---------------SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGE 285 (327)
Q Consensus 225 ~i~~v~q~~~----~~i~Dtpg~~~~---------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~e 285 (327)
++++|+|.+. ++-.++...... .++.+...+-...+|.. |||||+||+++++++ ..+
T Consensus 89 ~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~q---LSGGEQQRVAiARAf-a~~ 164 (228)
T COG4181 89 HVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQ---LSGGEQQRVALARAF-AGR 164 (228)
T ss_pred ceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccc---cCchHHHHHHHHHHh-cCC
Confidence 9999999752 111122111100 01112222222233444 999999999999999 999
Q ss_pred CceEEcccHH
Q 020346 286 PGCVVKGDWE 295 (327)
Q Consensus 286 p~~~v~~~~~ 295 (327)
|++++.|+|.
T Consensus 165 P~vLfADEPT 174 (228)
T COG4181 165 PDVLFADEPT 174 (228)
T ss_pred CCEEeccCCC
Confidence 9999988663
No 181
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3e-19 Score=166.75 Aligned_cols=156 Identities=13% Similarity=0.205 Sum_probs=106.6
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+||||+|||||+++|+| +++|++|+|+++|.++..
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG------------IEKVKSGEIFYNNQAITD 75 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECCc
Confidence 345677778864 35899999998 999999999999999999999999 899999999999998754
Q ss_pred ccccCCCcceeeEEEEEEEccCCCe-----EEeCcccCCccccccCHh-------HHhhh------hHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGGY-----LADTPGFNQPSLLKVTKQ-------SLAQT------FPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~~-----i~Dtpg~~~~~l~~~~~~-------~l~~~------~~~~~~~LSgGq~q 273 (327)
.+... .++.++|++|++... +.++..+..... ..... .+.+. .......||+||+|
T Consensus 76 ~~~~~-----~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 149 (269)
T PRK13648 76 DNFEK-----LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQ 149 (269)
T ss_pred CCHHH-----HHhheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHH
Confidence 33211 456799999975311 111111110000 00000 00110 01112249999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 150 rl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 190 (269)
T PRK13648 150 RVAIAGVL-ALNPSVIILDEATSMLDPDARQNLLDLVRKVKS 190 (269)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 455566666766643
No 182
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.76 E-value=2.4e-19 Score=167.31 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=103.9
Q ss_pred CCceeeccCcc---------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 136 GYEPLFCSVES---------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 136 ~~~~~~~s~~~---------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
.++.+.++|+. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G------------l~~p~~G~i~~~ 73 (267)
T PRK15112 6 EVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG------------MIEPTSGELLID 73 (267)
T ss_pred EEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhC------------CCCCCCCEEEEC
Confidence 34566667742 35899999998 999999999999999999999999 899999999999
Q ss_pred ceeeccccccCCCcceeeEEEEEEEccCCCeEEe------CcccC---CccccccC----HhHHhhhh---HHH----HH
Q 020346 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD------TPGFN---QPSLLKVT----KQSLAQTF---PEI----KE 265 (327)
Q Consensus 206 g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~D------tpg~~---~~~l~~~~----~~~l~~~~---~~~----~~ 265 (327)
|.++...... ...+.++|+||.+..++.+ ...+. ........ ..++.+.+ +.. ..
T Consensus 74 g~~~~~~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 148 (267)
T PRK15112 74 DHPLHFGDYS-----YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH 148 (267)
T ss_pred CEECCCCchh-----hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCch
Confidence 9887532211 1335689999975311111 10000 00000000 00111110 111 23
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.||+||+||+++++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 149 ~LS~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 197 (267)
T PRK15112 149 MLAPGQKQRLGLARAL-ILRPKVIIADEALASLDMSMRSQLINLMLELQE 197 (267)
T ss_pred hcCHHHHHHHHHHHHH-HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999 999999999965 455566666666644
No 183
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=8.7e-20 Score=175.29 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=105.6
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc----ccccceeecc
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE----PILGSKWFED 206 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~----p~~G~i~~~g 206 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|
T Consensus 5 ~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~G------------ll~~~~~~~~G~i~~~G 72 (326)
T PRK11022 5 NVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMG------------LIDYPGRVMAEKLEFNG 72 (326)
T ss_pred EEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCCCCcceEEEECC
Confidence 34566667754 35899999998 999999999999999999999999 666 5899999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEEe--Ccc--------cC-C-c----------cccccCHh---HHhhhhH
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD--TPG--------FN-Q-P----------SLLKVTKQ---SLAQTFP 261 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~D--tpg--------~~-~-~----------~l~~~~~~---~l~~~~~ 261 (327)
+++...+.+.. .+...+.++|+||++...+.. +.+ .. . . .++.+.+. ...+.++
T Consensus 73 ~~i~~~~~~~~-~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p 151 (326)
T PRK11022 73 QDLQRISEKER-RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP 151 (326)
T ss_pred EECCcCCHHHH-HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 99876653321 111234799999975321211 111 00 0 0 00111110 1111222
Q ss_pred HHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 262 ~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
..|||||+||+.+++++ +.+|+++|.|+| .-.....++++++..
T Consensus 152 ---~~LSgGq~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 152 ---HQLSGGMSQRVMIAMAI-ACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred ---hhCCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 23999999999999999 999999999955 455556666666644
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.4e-20 Score=184.93 Aligned_cols=158 Identities=13% Similarity=0.174 Sum_probs=109.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 7 SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG------------IHEPTKGTITINNINYNKLDH 74 (510)
T ss_pred EEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CcCCCccEEEECCEECCCCCH
Confidence 4567788887778999999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---ccc---cCH----hHHhh---------hhHHHHHhcCccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---LLK---VTK----QSLAQ---------TFPEIKEMLKANE 271 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---l~~---~~~----~~l~~---------~~~~~~~~LSgGq 271 (327)
... ..+.++|++|.+.. ++.|+..+.... ... +.. ..... ........|||||
T Consensus 75 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 150 (510)
T PRK09700 75 KLA----AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISH 150 (510)
T ss_pred HHH----HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHH
Confidence 110 23468999997422 233332221100 000 000 00111 1111233499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+||+.|++++ +.+|.++|+|+| .....+.++++++.+.
T Consensus 151 ~qrv~ia~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 194 (510)
T PRK09700 151 KQMLEIAKTL-MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE 194 (510)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999 999999999955 4556666777776543
No 185
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.9e-19 Score=168.91 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=104.7
Q ss_pred CceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG------------LHVPTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcc
Confidence 4567777753 35899999998 999999999999999999999999 89999999999999876
Q ss_pred cccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCHh-------HHhhh--h-HH----HHHhcCccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTKQ-------SLAQT--F-PE----IKEMLKANE 271 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~~-------~l~~~--~-~~----~~~~LSgGq 271 (327)
..+... .....++.++|+||.+.. ++.|+..+... ....... ++.+. . +. ....|||||
T Consensus 73 ~~~~~~-~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 150 (280)
T PRK13649 73 STSKNK-DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQ-NFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQ 150 (280)
T ss_pred cccccc-CHHHHHhheEEEeeChhhhhccccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 532100 001134678999997421 22222211100 0000000 00000 0 11 123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+.+++++ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 151 ~qrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (280)
T PRK13649 151 MRRVAIAGIL-AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193 (280)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 355555566666543
No 186
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.76 E-value=2e-19 Score=173.14 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=100.0
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.... +..++.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G------------l~~p~~G~I~~~G~~i~~~~~~~~--~~~r~~ 99 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIG------------LVKATDGEVAWLGKDLLGMKDDEW--RAVRSD 99 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC------------CCCCCCcEEEECCEECCcCCHHHH--HHHhCc
Confidence 35789999998 999999999999999999999999 889999999999998876543210 113457
Q ss_pred EEEEEccCCC------eEEeCcccCC--c--cc-------------cccCH-hHHhhhhHHHHHhcCccccccccccccc
Q 020346 226 VSLLPLSGGG------YLADTPGFNQ--P--SL-------------LKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 226 i~~v~q~~~~------~i~Dtpg~~~--~--~l-------------~~~~~-~~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
++|++|++.. .+.|+..+.. . .+ +.+.+ .+..+.++ ..|||||+||+.+++++
T Consensus 100 i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p---~~LSgG~~QRv~iArAL 176 (331)
T PRK15079 100 IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP---HEFSGGQCQRIGIARAL 176 (331)
T ss_pred eEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc---ccCCHHHHHHHHHHHHH
Confidence 9999998521 1222211100 0 00 00111 01112222 23999999999999999
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|+++|.|+| .-.....++++++..
T Consensus 177 -~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (331)
T PRK15079 177 -ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR 209 (331)
T ss_pred -hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 999999999965 344455566666644
No 187
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.7e-19 Score=170.42 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=106.2
Q ss_pred CCceeeccCcch-----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|.+. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.+.
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~G------------l~~p~~G~i~~~g~~~ 71 (305)
T PRK13651 4 KVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNA------------LLLPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCcEEEEeceec
Confidence 356677777542 5899999998 999999999999999999999999 8999999999998765
Q ss_pred ccccc-------------cC------CCcceeeEEEEEEEccCCCeE-----EeCcccCCcc---------------ccc
Q 020346 210 GEVST-------------KS------GRGKHTTRHVSLLPLSGGGYL-----ADTPGFNQPS---------------LLK 250 (327)
Q Consensus 210 ~~~s~-------------~~------~~g~~tt~~i~~v~q~~~~~i-----~Dtpg~~~~~---------------l~~ 250 (327)
...+. .. ......++.++|+||++...+ .|+..+.... ++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 22110 00 000124577999999753222 2222221100 000
Q ss_pred cCHh-HHhhhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 251 VTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 251 ~~~~-~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+... .+.+.. ...|||||+||+++++++ +.+|+++|+|+| ...+.+.++++++..
T Consensus 152 ~gL~~~~~~~~---~~~LSgGqkqrvalA~aL-~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 213 (305)
T PRK13651 152 VGLDESYLQRS---PFELSGGQKRRVALAGIL-AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK 213 (305)
T ss_pred cCCChhhhhCC---hhhCCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1110 111112 234999999999999999 999999999955 456666677777654
No 188
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.76 E-value=2.5e-19 Score=181.13 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=108.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG------------IYTRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred EEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCCH
Confidence 3567788887778999999998 999999999999999999999999 889999999999988754322
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---ccccCHh----HHhh---------hhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---LLKVTKQ----SLAQ---------TFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---l~~~~~~----~l~~---------~~~~~~~~LSgGq~q~ 274 (327)
... ..+.+++++|++. .++.|+..+.... ....... .... ........|||||+||
T Consensus 74 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 149 (501)
T PRK10762 74 KSS----QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQM 149 (501)
T ss_pred HHH----HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHH
Confidence 110 2346899999742 2333333221100 0000000 0111 1111124599999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+++++ +.+|.++++|+| ...+.+.++++++..
T Consensus 150 v~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 189 (501)
T PRK10762 150 VEIAKVL-SFESKVIIMDEPTDALTDTETESLFRVIRELKS 189 (501)
T ss_pred HHHHHHH-hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 455566667777644
No 189
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.4e-19 Score=169.28 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=104.6
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|. +..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~ 74 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMG------------FVRLASGKISILGQPTRQA 74 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEhHHh
Confidence 45677888885 467899999998 999999999999999999999999 8899999999999886421
Q ss_pred cccCCCcceeeEEEEEEEccCCC------eEEeCcccCCc---cc---cccC-HhHHhhhh---------HHHHHhcCcc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG------YLADTPGFNQP---SL---LKVT-KQSLAQTF---------PEIKEMLKAN 270 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~------~i~Dtpg~~~~---~l---~~~~-~~~l~~~~---------~~~~~~LSgG 270 (327)
. ....++|+||.+.. .+.++..+... .. ..-. ........ ......||||
T Consensus 75 ~--------~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 146 (272)
T PRK15056 75 L--------QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGG 146 (272)
T ss_pred h--------ccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHH
Confidence 0 22458999987532 11222111000 00 0000 00001100 0011239999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+.+++|+ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 147 ~~qrv~laraL-~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 190 (272)
T PRK15056 147 QKKRVFLARAI-AQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190 (272)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 99999999999 899999999965 455556666666644
No 190
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.6e-19 Score=163.41 Aligned_cols=151 Identities=20% Similarity=0.291 Sum_probs=101.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.... .++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~~~~~- 68 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAG------------FLTPASGSLTLNGQDHTTTPP- 68 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCeecCcCCh-
Confidence 456777776433 3788887 999999999999999999999999 899999999999998764332
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCC-ccc--cccC---HhHHhhh------hHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ-PSL--LKVT---KQSLAQT------FPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~-~~l--~~~~---~~~l~~~------~~~~~~~LSgGq~q~~~~~~ 279 (327)
..+.++|+||.+.. ++.++..+.. ... .... ..++... .......||+||+||+.+++
T Consensus 69 ------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 142 (232)
T PRK10771 69 ------SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALAR 142 (232)
T ss_pred ------hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHH
Confidence 23468999987532 2223222110 000 0000 0011110 11111249999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+.+.++++++..
T Consensus 143 al-~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 143 CL-VREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred HH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999965 455566666666643
No 191
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.3e-19 Score=170.13 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=106.4
Q ss_pred CCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~i~~ 73 (277)
T PRK13642 6 EVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG------------LFEEFEGKVKIDGELLTA 73 (277)
T ss_pred EEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCCEEEECCEECCc
Confidence 35677778863 24899999998 999999999999999999999999 899999999999998764
Q ss_pred ccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCccccccCHhHH----hhh---------hHHHHHhcCccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPSLLKVTKQSL----AQT---------FPEIKEMLKANEPA 273 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~l~~~~~~~l----~~~---------~~~~~~~LSgGq~q 273 (327)
.+... .++.++|++|++. ..+.|+..+.... ........ ... .......|||||+|
T Consensus 74 ~~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 147 (277)
T PRK13642 74 ENVWN-----LRRKIGMVFQNPDNQFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQ 147 (277)
T ss_pred CCHHH-----HhcceEEEEECHHHhhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH
Confidence 33221 4568999999752 1222222211000 00011110 000 00111239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++++ +.+|.++|+|+| .....+.+++.++..
T Consensus 148 rv~lAraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 188 (277)
T PRK13642 148 RVAVAGII-ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE 188 (277)
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 455555566666644
No 192
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.3e-19 Score=163.71 Aligned_cols=153 Identities=18% Similarity=0.304 Sum_probs=104.3
Q ss_pred CceeeccCcch--hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|++. .+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~ 70 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPR------------FYDVDSGRILIDGHDVRDYT 70 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccCCCCEEEECCEEhhhCC
Confidence 45667777654 6899999998 999999999999999999999999 88999999999998876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc--ccc-------CHhHHhhhhH--------HHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL--LKV-------TKQSLAQTFP--------EIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l--~~~-------~~~~l~~~~~--------~~~~~LSgGq~q 273 (327)
... .++.+++++|++.. ++.|+..+..... ..+ ...+....++ .....||+||+|
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q 145 (234)
T cd03251 71 LAS-----LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ 145 (234)
T ss_pred HHH-----HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence 221 35678999987522 2222222211100 000 0011111110 012349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+.+++++ +.+|+++++|+| ...+.+.+++.++
T Consensus 146 rv~la~al-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 184 (234)
T cd03251 146 RIAIARAL-LKDPPILILDEATSALDTESERLVQAALERL 184 (234)
T ss_pred HHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 99999999 899999999965 3455555666655
No 193
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.76 E-value=8.2e-20 Score=185.14 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=109.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...+
T Consensus 12 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG------------IVPPDSGTLEIGGNPCARLT 79 (510)
T ss_pred EEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCCCC
Confidence 34577888888778999999998 999999999999999999999999 89999999999998876543
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccc--------cCHhHHhhhhHHHHHhcCccccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK--------VTKQSLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~--------~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
.... ....++|++|++.. ++.|+..+....... ++...+..........|||||+||+.|++++
T Consensus 80 ~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 80 PAKA----HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred HHHH----HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 2210 12468999997532 222322221100000 0000010111111234999999999999999
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|.++|+|+| ...+.+.++++++..
T Consensus 156 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (510)
T PRK15439 156 -MRDSRILILDEPTASLTPAETERLFSRIRELLA 188 (510)
T ss_pred -HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999955 456666677777644
No 194
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=4e-19 Score=160.68 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=105.9
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.. +.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~ 70 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFR------------LVELSSGSILIDGVDISK 70 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCCEEEECCEEhHh
Confidence 345677788753 46999999998 999999999999999999999999 889999999999998765
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc-cccc----CHhHHhhhh-----------HHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS-LLKV----TKQSLAQTF-----------PEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~-l~~~----~~~~l~~~~-----------~~~~~~LSgGq~ 272 (327)
.+... ..+.++|++|.+.. ++.|+..+.... .+.+ +...+.... ......||+||+
T Consensus 71 ~~~~~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~ 145 (221)
T cd03244 71 IGLHD-----LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQR 145 (221)
T ss_pred CCHHH-----HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHH
Confidence 43222 45679999997532 122222111100 0000 000011110 011235999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+.+++++ +.+|.++++|+| ...+.+.++++++
T Consensus 146 qr~~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (221)
T cd03244 146 QLLCLARAL-LRKSKILVLDEATASVDPETDALIQKTIREA 185 (221)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 999999999 999999999965 3445555555554
No 195
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=2.6e-19 Score=182.73 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=111.0
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVG------------IWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEehhh
Confidence 567788899953 57899999998 999999999999999999999999 999999999999999887
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccc--ccc-------CHhHHhhhhHH--------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSL--LKV-------TKQSLAQTFPE--------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l--~~~-------~~~~l~~~~~~--------~~~~LSgGq 271 (327)
.+... .+++++++||++ ..++.|+..+..+.. +.+ ...+....+|+ -...|||||
T Consensus 385 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq 459 (544)
T TIGR01842 385 WDRET-----FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459 (544)
T ss_pred CCHHH-----HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHH
Confidence 76543 677899999975 223444433221111 000 00111111111 012499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+++++++ +.+|+++|+||| +..+...+.+.++
T Consensus 460 ~qrl~lARal-l~~~~ililDEpts~LD~~~~~~i~~~l~~~ 500 (544)
T TIGR01842 460 RQRIALARAL-YGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500 (544)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 3444444445444
No 196
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3e-19 Score=168.80 Aligned_cols=157 Identities=13% Similarity=0.156 Sum_probs=106.5
Q ss_pred CCceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 136 GYEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||+|||||+++|+| +.+|++|+|+++|+++
T Consensus 4 ~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i 71 (290)
T PRK13634 4 TFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG------------LLQPTSGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEEC
Confidence 35677777853 46899999998 999999999999999999999999 8899999999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCc--c-------------ccccCHh-HHhhhhHHHHHhcC
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQP--S-------------LLKVTKQ-SLAQTFPEIKEMLK 268 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~--~-------------l~~~~~~-~l~~~~~~~~~~LS 268 (327)
...... ......++.++|++|++.. ++.++..+... . ++.+.+. .+.+.. ...||
T Consensus 72 ~~~~~~-~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---~~~LS 147 (290)
T PRK13634 72 TAGKKN-KKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS---PFELS 147 (290)
T ss_pred cccccc-chHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC---cccCC
Confidence 532100 0001145679999997522 22222211100 0 0001110 111111 23499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+||+.+++++ +.+|.++|+|+| .-...+.+++.++..
T Consensus 148 gGq~qrv~lAraL-~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~ 193 (290)
T PRK13634 148 GGQMRRVAIAGVL-AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK 193 (290)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999955 455556666666644
No 197
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.76 E-value=1.9e-19 Score=183.89 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=103.9
Q ss_pred hcCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 134 TWGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 134 ~~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.+.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|+++.+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG------------LYQPQSGEILLDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEECCC
Confidence 4667888999964 46899999998 999999999999999999999999 999999999999999887
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCc-ccCCccccc-cCHhHHhhhh--HHH---HHhcCccccccccccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTP-GFNQPSLLK-VTKQSLAQTF--PEI---KEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtp-g~~~~~l~~-~~~~~l~~~~--~~~---~~~LSgGq~q~~~~~~~~ 281 (327)
.+... .++++++++|++ ++++.++. ......++. ++...+.... ++- ...|||||+||+++++++
T Consensus 390 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 390 EQPED-----YRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred CCHHH-----HhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 65443 677899999975 23343431 000000000 0000000000 000 125999999999999999
Q ss_pred cccCCceEEcccH
Q 020346 282 HLGEPGCVVKGDW 294 (327)
Q Consensus 282 h~~ep~~~v~~~~ 294 (327)
+.+|+++++||+
T Consensus 465 -~~~~~ililDE~ 476 (547)
T PRK10522 465 -AEERDILLLDEW 476 (547)
T ss_pred -hcCCCEEEEECC
Confidence 999999999965
No 198
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.76 E-value=1.6e-19 Score=167.88 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=106.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeecc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~ 211 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|+ +|+|+++|.++..
T Consensus 6 ~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 6 RVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG------------LITGDKSAGSHIELLGRTVQR 73 (262)
T ss_pred EEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhc------------cCCCCCCCceEEEECCEeccc
Confidence 3566777887778999999998 999999999999999999999999 77775 5999999988754
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---c-----cccC---HhHHhh---------hhHHHHHhc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---L-----LKVT---KQSLAQ---------TFPEIKEML 267 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---l-----~~~~---~~~l~~---------~~~~~~~~L 267 (327)
.......-...++.++|+||.... ++.++..+.... + .... .....+ ........|
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred ccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 321000001134568999997532 222222111000 0 0000 000010 011112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 154 S~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 200 (262)
T PRK09984 154 SGGQQQRVAIARAL-MQQAKVILADEPIASLDPESARIVMDTLRDINQ 200 (262)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEecCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999 899999999965 455566667776654
No 199
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.4e-19 Score=164.08 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=106.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++| ++|+|+++|.+
T Consensus 8 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 8 IETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR------------MNDLVEGIKIEGNVIYEGKN 75 (254)
T ss_pred EEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccCCcCCCCceEEEECCEe
Confidence 34567788887777999999998 999999999999999999999999 7776 59999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCH----hHHhhh-------------hHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTK----QSLAQT-------------FPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~----~~l~~~-------------~~~~~~~LS 268 (327)
+...+... ...++.++|++|++.. ++.|+..+.......... ..+... .......||
T Consensus 76 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (254)
T PRK14273 76 IYSNNFDI---LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLS 152 (254)
T ss_pred cccccccH---HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCC
Confidence 75321100 1145679999997532 222222111000000000 001110 011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|.++|+|+| ...+...+++.++.
T Consensus 153 gG~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (254)
T PRK14273 153 GGQQQRLCIARTL-AIEPNVILMDEPTSALDPISTGKIEELIINLK 197 (254)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999965 45555666666663
No 200
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.8e-19 Score=163.37 Aligned_cols=152 Identities=16% Similarity=0.216 Sum_probs=106.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|....+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g------------~~~~~~G~i~~~g~~~~~~~~- 69 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG------------FETPTSGEILLDGKDITNLPP- 69 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEcCcCCh-
Confidence 466777887778999999998 999999999999999999999999 899999999999998765432
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hH------HhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QS------LAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~------l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.++.+++++|++.. .+.|+..+.. ....... .. +..........||+||+||+.++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~~nl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (232)
T cd03300 70 ------HKRPVNTVFQNYALFPHLTVFENIAFGL-RLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142 (232)
T ss_pred ------hhcceEEEecccccCCCCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 24568999987422 1222211100 0000000 00 00001111234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +..|.++++|+| ...+.+.++++++..
T Consensus 143 ral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 143 RAL-VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 355556666666654
No 201
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.9e-19 Score=179.24 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=106.4
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+...
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG------------IYQKDSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCceEEEECCEECCCCCHHH
Confidence 45667777777999999998 999999999999999999999999 88999999999999875432211
Q ss_pred CCcceeeEEEEEEEccCCC----eEEeCcccCCccccc--cCHh----HHhh---------hhHHHHHhcCccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK--VTKQ----SLAQ---------TFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~--~~~~----~l~~---------~~~~~~~~LSgGq~q~~~~ 277 (327)
. ..+.++++||.+.. ++.|+..+....... .... .... ........|||||+||+.+
T Consensus 70 ~----~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 145 (491)
T PRK10982 70 A----LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEI 145 (491)
T ss_pred H----HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence 0 23568999997532 233332221110000 0000 0111 1111134499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 146 A~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 182 (491)
T PRK10982 146 AKAF-SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182 (491)
T ss_pred HHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999 899999999965 355555666666643
No 202
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.4e-19 Score=163.88 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=105.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 6 ETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNR------------LLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred EEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCcccCCCCceEEEECCEEc
Confidence 3567788887778999999998 999999999999999999999999 7776 599999999987
Q ss_pred cc--ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--cc----ccc--CHhHHhhh----------hHHHHH
Q 020346 210 GE--VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--SL----LKV--TKQSLAQT----------FPEIKE 265 (327)
Q Consensus 210 ~~--~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~l----~~~--~~~~l~~~----------~~~~~~ 265 (327)
.. .... ..+.++++++|.+.. ++.++..+... .. ... ....+... ......
T Consensus 74 ~~~~~~~~-----~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (253)
T PRK14267 74 YSPDVDPI-----EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148 (253)
T ss_pred cccccChH-----HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChh
Confidence 52 2111 135579999997532 22222221100 00 000 00011111 111123
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
.|||||+||+.+++++ +.+|.++|+|+| ...+...++++++.
T Consensus 149 ~LS~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 196 (253)
T PRK14267 149 NLSGGQRQRLVIARAL-AMKPKILLMDEPTANIDPVGTAKIEELLFELK 196 (253)
T ss_pred hCCHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999 899999999965 35555556666653
No 203
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.75 E-value=7.5e-19 Score=161.63 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=104.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeecccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~~s 213 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| + ++|++|+|.++|.++...+
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~G~i~~~g~~~~~~~ 71 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG------------REDYEVTGGTVEFKGKDLLELS 71 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC------------CccCCCCceEEEECCCccccCC
Confidence 466777887777999999998 999999999999999999999999 6 4799999999998876543
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeC-------c--ccCCc-cccccCHhHHhhhhH----------HH----H-HhcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADT-------P--GFNQP-SLLKVTKQSLAQTFP----------EI----K-EMLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dt-------p--g~~~~-~l~~~~~~~l~~~~~----------~~----~-~~LS 268 (327)
.... ....+++++|++..+-..+ . .+... ....+...++..... .. . ..||
T Consensus 72 ~~~~----~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 147 (248)
T PRK09580 72 PEDR----AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFS 147 (248)
T ss_pred HHHH----hhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCC
Confidence 2211 2356888888742211000 0 00000 000011101111000 00 0 1499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|||+||+.+++++ +.+|.++|+|+| .-.+.+.++++++..
T Consensus 148 ~G~~qrv~laral-~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~ 193 (248)
T PRK09580 148 GGEKKRNDILQMA-VLEPELCILDESDSGLDIDALKIVADGVNSLRD 193 (248)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 455556666666654
No 204
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.8e-19 Score=164.32 Aligned_cols=157 Identities=15% Similarity=0.214 Sum_probs=104.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| ++. |++|+|+++|+++
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 8 EARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR------------MNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred EEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh------------hcccCCCCCCceEEEECCEEc
Confidence 4566777787777999999998 999999999999999999999999 543 6899999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cc-c-ccCHhHHh---hh----------hHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SL-L-KVTKQSLA---QT----------FPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l-~-~~~~~~l~---~~----------~~~~~~~LSg 269 (327)
...+... ...++.++|++|.+..+ +.|+..+... .. . ......+. .. .......|||
T Consensus 76 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 152 (253)
T PRK14242 76 YDPHVDV---VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG 152 (253)
T ss_pred cccccCH---HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 5421110 01356799999975322 2222211100 00 0 00000111 00 0011234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| ...+.+.+++.++.
T Consensus 153 Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 196 (253)
T PRK14242 153 GQQQRLCIARAL-AVEPEVLLMDEPASALDPIATQKIEELIHELK 196 (253)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999 899999999965 45556666666663
No 205
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=3.7e-19 Score=171.05 Aligned_cols=145 Identities=20% Similarity=0.297 Sum_probs=100.0
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++...+.... +..+++
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g------------l~~p~~G~i~~~g~~l~~~~~~~~--~~~r~~ 93 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTM------------IETPTGGELYYQGQDLLKADPEAQ--KLLRQK 93 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHc------------CCCCCCcEEEECCEEcCcCCHHHH--HHHhCC
Confidence 36899999998 999999999999999999999999 889999999999998876543210 113457
Q ss_pred EEEEEccCCCeEE------eCcc--------cCCcc--------ccccCHh-HHhhhhHHHHHhcCcccccccccccccc
Q 020346 226 VSLLPLSGGGYLA------DTPG--------FNQPS--------LLKVTKQ-SLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 226 i~~v~q~~~~~i~------Dtpg--------~~~~~--------l~~~~~~-~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
++|++|++...+. +... ..... ++.+.+. ...+.++ ..|||||+||+.+++++
T Consensus 94 i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p---~~LSgGq~QRv~iArAL- 169 (327)
T PRK11308 94 IQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP---HMFSGGQRQRIAIARAL- 169 (327)
T ss_pred EEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC---ccCCHHHHHHHHHHHHH-
Confidence 9999998521111 1110 00000 0001110 1111222 23999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|+++|.|+| .-.....+++.++..
T Consensus 170 ~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~ 202 (327)
T PRK11308 170 MLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ 202 (327)
T ss_pred HcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 999999999965 355556666666654
No 206
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.75 E-value=2.4e-19 Score=187.94 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=107.9
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|.. +.+++++++.+ +|+.++|+|+||+|||||+|+|+| +++|++|+|.+||.++.+
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g------------~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQR------------LYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEehhh
Confidence 567888999953 46899999998 899999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc--c-------CHhHHhhhhH--------HHHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK--V-------TKQSLAQTFP--------EIKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~--~-------~~~~l~~~~~--------~~~~~LSgGq 271 (327)
++... .++.++++||++ ++++.|+..+..+.... + ...+.-..+| +-...|||||
T Consensus 524 ~~~~~-----~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 524 ADPAW-----LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred CCHHH-----HHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 87654 678899999985 34555555443322110 0 0011111111 0012499999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++++++ +.+|.++++||+
T Consensus 599 ~qri~lARal-l~~~~ililDEp 620 (694)
T TIGR01846 599 RQRIAIARAL-VGNPRILIFDEA 620 (694)
T ss_pred HHHHHHHHHH-HhCCCEEEEECC
Confidence 9999999999 999999999965
No 207
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.9e-19 Score=158.10 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=100.8
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cccccceeeccee
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EPILGSKWFEDQR 208 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p~~G~i~~~g~~ 208 (327)
.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| ++ +|++|+|.++|.+
T Consensus 5 ~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~~~G~i~~~g~~ 72 (192)
T cd03232 5 TWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG------------RKTAGVITGEILINGRP 72 (192)
T ss_pred EEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCCcceEEEECCEe
Confidence 35667777754 56899999998 999999999999999999999999 43 5899999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
+. .. .++.+++++|.+..+ . .....+++..... ...|||||+||+.|++++ +.+|.+
T Consensus 73 ~~----~~-----~~~~i~~~~q~~~~~--~----~~tv~~~l~~~~~-------~~~LSgGe~qrv~la~al-~~~p~v 129 (192)
T cd03232 73 LD----KN-----FQRSTGYVEQQDVHS--P----NLTVREALRFSAL-------LRGLSVEQRKRLTIGVEL-AAKPSI 129 (192)
T ss_pred hH----HH-----hhhceEEecccCccc--c----CCcHHHHHHHHHH-------HhcCCHHHhHHHHHHHHH-hcCCcE
Confidence 75 11 445788999853110 0 0112222221110 115999999999999999 999999
Q ss_pred EEcccH------HHHHHHHHHHHHHHH
Q 020346 289 VVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 289 ~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++|+| ...+...++++++..
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~ 156 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLAD 156 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999855 455556666666643
No 208
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.8e-19 Score=163.25 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=104.7
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|. +..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+.
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~v~~~g~~~~~~~~ 70 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFR------------FYDVSSGSILIDGQDIREVTL 70 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCEEEECCEEhhhCCH
Confidence 456677774 456899999998 999999999999999999999999 889999999999998765432
Q ss_pred cCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc--cc-------cCHhHHhhhhHH--------HHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL--LK-------VTKQSLAQTFPE--------IKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l--~~-------~~~~~l~~~~~~--------~~~~LSgGq~q~ 274 (327)
.. .++.++|++|.+.. ++.|+..+..... .. ....+....++. -...||+||+||
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 71 DS-----LRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HH-----HHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 21 34568999987522 2222221111000 00 000111111110 012599999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+.+++++ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 146 l~la~aL-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 184 (236)
T cd03253 146 VAIARAI-LKNPPILLLDEATSALDTHTEREIQAALRDVS 184 (236)
T ss_pred HHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999 999999999965 34455556665554
No 209
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.9e-19 Score=165.81 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=105.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc---cccccceeecceeeccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF---EPILGSKWFEDQRVGEV 212 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~---~p~~G~i~~~g~~v~~~ 212 (327)
++.+.+.|++..+++++++.+ +|++++|+|+||+|||||+|+|+| ++ +|++|+|+++|.++...
T Consensus 5 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~G~i~~~g~~i~~~ 72 (246)
T PRK14269 5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNR------------MNDKIAKIDGLVEIEGKDVKNQ 72 (246)
T ss_pred eeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCCceEEEECCEecccC
Confidence 456777787777999999998 999999999999999999999999 65 47999999999988654
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--c-c--ccC---HhHHhh---hhH-------HHHHhcCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--L-L--KVT---KQSLAQ---TFP-------EIKEMLKANE 271 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--l-~--~~~---~~~l~~---~~~-------~~~~~LSgGq 271 (327)
+... .++.++|+||.+.. ++.|+..+.... . . ... ...+.+ ..+ .....||+||
T Consensus 73 ~~~~-----~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 147 (246)
T PRK14269 73 DVVA-----LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQ 147 (246)
T ss_pred CHHH-----HhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHH
Confidence 3221 45679999997533 222332211000 0 0 000 001111 111 1123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+++++++ +.+|.++++|+| .....+.+++.++.
T Consensus 148 ~qrv~laral-~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 189 (246)
T PRK14269 148 QQRLCIARAL-AIKPKLLLLDEPTSALDPISSGVIEELLKELS 189 (246)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999 999999999965 34555556666553
No 210
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.2e-19 Score=170.15 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=105.2
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~~~~~~~ 71 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG------------ILKPTSGEVLIKGEPIKYDKK 71 (275)
T ss_pred EEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCccEEEECCEECccccc
Confidence 566777885 456899999998 999999999999999999999999 899999999999998742111
Q ss_pred cCCCcceeeEEEEEEEccCCC-----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. .+..++.++|+||++.. .+.|+..+... . ++.+......+.. ...|||||+||
T Consensus 72 ~---~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~LS~Gq~qr 145 (275)
T PRK13639 72 S---LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP---PHHLSGGQKKR 145 (275)
T ss_pred h---HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC---hhhCCHHHHHH
Confidence 0 01145679999997521 11122111100 0 0000111111111 23499999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.|++|+ +.+|.++++|+| .-...+.+++.++..
T Consensus 146 v~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 185 (275)
T PRK13639 146 VAIAGIL-AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK 185 (275)
T ss_pred HHHHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555566666643
No 211
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.8e-19 Score=169.62 Aligned_cols=153 Identities=13% Similarity=0.191 Sum_probs=106.1
Q ss_pred CCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc---cceeecceee
Q 020346 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~---G~i~~~g~~v 209 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++ |+|.++|.++
T Consensus 7 ~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G------------~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 7 EFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLING------------LLLPDDNPNSKITVDGITL 74 (282)
T ss_pred EEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------ccCCCCCCCcEEEECCEEC
Confidence 35667777753 45899999998 999999999999999999999999 889998 8999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCC-----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSg 269 (327)
...+... ...+++|++|++. .++.|+..+.... ++.+.+....+.. ...||+
T Consensus 75 ~~~~~~~-----~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~LS~ 146 (282)
T PRK13640 75 TAKTVWD-----IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE---PANLSG 146 (282)
T ss_pred CcCCHHH-----HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC---cccCCH
Confidence 6433211 3567899998752 2233333221100 0001111111111 234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+.+++++ +.+|.++|+|+| .-...+.+++.++..
T Consensus 147 G~~qrv~laral-~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 191 (282)
T PRK13640 147 GQKQRVAIAGIL-AVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191 (282)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 344555566666543
No 212
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.4e-19 Score=162.78 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=106.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ | ++|+|+++|.+
T Consensus 5 l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~v~~~g~~ 72 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINR------------MHDLVPSARVTGKILLDDTD 72 (252)
T ss_pred EEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHh------------cccCCCCCCCceEEEECCEE
Confidence 34567788887778999999998 999999999999999999999999 654 3 69999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hHHhhhh----------HHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QSLAQTF----------PEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~l~~~~----------~~~~~~L 267 (327)
+...+... ...++.++++||++.. ++.++..+.......... .++...+ ......|
T Consensus 73 i~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 149 (252)
T PRK14256 73 IYDRGVDP---VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMEL 149 (252)
T ss_pred cccccCCh---HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcC
Confidence 75432111 1146679999997532 222222111000000000 0111111 1112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+||+++++++ +.+|.++|+|+| ...+...++++++.
T Consensus 150 S~G~~qrl~laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 195 (252)
T PRK14256 150 SGGQQQRLCIARTI-AVKPEVILMDEPASALDPISTLKIEELIEELK 195 (252)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999 899999999965 35555666666664
No 213
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.3e-19 Score=179.67 Aligned_cols=157 Identities=9% Similarity=0.108 Sum_probs=107.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc--cccceeecceeeccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++| ++|+|+++|.++...
T Consensus 7 ~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG------------VYPHGTYEGEIIFEGEELQAS 74 (506)
T ss_pred EEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCeEEEECCEECCCC
Confidence 4567788888778999999998 999999999999999999999999 7776 899999999987543
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc--cccCH----hHHhhh---------hHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL--LKVTK----QSLAQT---------FPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l--~~~~~----~~l~~~---------~~~~~~~LSgGq~q 273 (327)
+.... .++.++|+||++.. ++.|+..+..... ..... ..+... .......|||||+|
T Consensus 75 ~~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 75 NIRDT----ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQ 150 (506)
T ss_pred CHHHH----HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHH
Confidence 32110 23568999997522 2223322211000 00000 011111 11112359999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|++|++++ +.+|.++|+|+| .....+.+++.++..
T Consensus 151 rv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 191 (506)
T PRK13549 151 LVEIAKAL-NKQARLLILDEPTASLTESETAVLLDIIRDLKA 191 (506)
T ss_pred HHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 455556667766643
No 214
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=1.2e-18 Score=153.67 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=88.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
|+.+.++|++..+++++ +.+ +|++++|+|+||||||||+|+|+| +++|++|+|.++|..
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~------- 62 (177)
T cd03222 3 YPDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAG------------QLIPNGDNDEWDGIT------- 62 (177)
T ss_pred CCCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCCcEEEECCEE-------
Confidence 57788888888888874 666 899999999999999999999999 899999999998742
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+++++|... ||+||+||+.+++++ +.+|.++++|+|.
T Consensus 63 ----------i~~~~q~~~--------------------------------LSgGq~qrv~laral-~~~p~lllLDEPt 99 (177)
T cd03222 63 ----------PVYKPQYID--------------------------------LSGGELQRVAIAAAL-LRNATFYLFDEPS 99 (177)
T ss_pred ----------EEEEcccCC--------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEECCc
Confidence 456666321 999999999999999 9999999999653
Q ss_pred ------HHHHHHHHHHHHH
Q 020346 296 ------RYQYYFQLLDEIR 308 (327)
Q Consensus 296 ------r~~~~~~ll~e~~ 308 (327)
-.+....++.++.
T Consensus 100 s~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 4444445555553
No 215
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.75 E-value=1.8e-19 Score=181.54 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=105.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+|+|+| +++|++|+|.++|.++...+.
T Consensus 5 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G------------~~~p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 5 QISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAG------------ELPLLSGERQSQFSHITRLSF 72 (490)
T ss_pred EEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCceEEECCcccccCCH
Confidence 4567888887777999999998 999999999999999999999999 889999999999876643321
Q ss_pred cCCCcceeeEEEEEEEccCCCeEEeC-cc-cCCccccc-----------------cCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGGYLADT-PG-FNQPSLLK-----------------VTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~~i~Dt-pg-~~~~~l~~-----------------~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
.. ..+.+++++|.+...+... +. +.....+. +......+.. ...|||||+||+
T Consensus 73 ~~-----~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgG~~qrv 144 (490)
T PRK10938 73 EQ-----LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRR---FKYLSTGETRKT 144 (490)
T ss_pred HH-----HHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCC---cccCCHHHHHHH
Confidence 11 2345788888643211100 00 00000111 1111111111 234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++++|+| ...+.+.++++++.+
T Consensus 145 ~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 183 (490)
T PRK10938 145 LLCQAL-MSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183 (490)
T ss_pred HHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 999999 999999999955 466666677777654
No 216
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.75 E-value=4.2e-19 Score=182.80 Aligned_cols=142 Identities=15% Similarity=0.254 Sum_probs=105.5
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.+.
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR------------VYDPTVGQILIDGIDINTV 402 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc------------CCCCCCCEEEECCEEhhhC
Confidence 567888999965 56899999998 999999999999999999999999 9999999999999998877
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCH---------hHHhhhhHH--------HHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTK---------QSLAQTFPE--------IKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~---------~~l~~~~~~--------~~~~LSgGq~ 272 (327)
+... .++.++++||++ ++++.|+..+..+....-+. .+.....|+ -...|||||+
T Consensus 403 ~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 403 TRES-----LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred CHHH-----HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 6443 677899999985 23444444333221100000 000001110 0123999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+++++++ +.+|.++|+|||
T Consensus 478 qrl~lARal-l~~p~ililDEp 498 (585)
T TIGR01192 478 QRLAIARAI-LKNAPILVLDEA 498 (585)
T ss_pred HHHHHHHHH-hcCCCEEEEECC
Confidence 999999999 999999999965
No 217
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.75 E-value=3.6e-19 Score=162.85 Aligned_cols=154 Identities=17% Similarity=0.297 Sum_probs=104.2
Q ss_pred CceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 137 YEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 137 ~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~ 70 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLER------------FYDPTSGEILLDGVDIRDL 70 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhc------------cCCCCCCEEEECCEehhhc
Confidence 4566677753 35899999998 999999999999999999999999 8899999999999887654
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccc--ccc-------CHhHHhhhhHH--------HHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSL--LKV-------TKQSLAQTFPE--------IKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l--~~~-------~~~~l~~~~~~--------~~~~LSgGq~ 272 (327)
+... .++.++|++|++.. ++.|+..+..... ..+ ...+.....+. ....|||||+
T Consensus 71 ~~~~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 145 (238)
T cd03249 71 NLRW-----LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK 145 (238)
T ss_pred CHHH-----HHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence 3221 34568999987422 2222222211100 000 00111111110 0134999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+.+++++ +.+|+++|+|+| ...+.+.++++++.
T Consensus 146 qrv~la~al-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 186 (238)
T cd03249 146 QRIAIARAL-LRNPKILLLDEATSALDAESEKLVQEALDRAM 186 (238)
T ss_pred HHHHHHHHH-hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 999999999 899999999965 35555666666653
No 218
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=1.6e-19 Score=163.90 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=116.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.++.+|+++.++++++|.+ +|++.+++|+|||||||++++|+| +++|++|+|.++|.+++..
T Consensus 4 ~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILg------------lle~~~G~I~~~g~~~~~~-- 69 (300)
T COG4152 4 EIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG------------LLEPTEGEITWNGGPLSQE-- 69 (300)
T ss_pred EEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhc------------cCCccCceEEEcCcchhhh--
Confidence 4567889999999999999998 999999999999999999999999 9999999999999988653
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHhHHhh-------------hhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQSLAQ-------------TFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~~l~~-------------~~~~~~~~LSgGq~q~~~~ 277 (327)
.+..|+|+|-+.+. ++.|...+.. .+..+...+... ....-.+.||.|++|++.|
T Consensus 70 -------~~~rIGyLPEERGLy~k~tv~dql~yla-~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQf 141 (300)
T COG4152 70 -------IKNRIGYLPEERGLYPKMTVEDQLKYLA-ELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQF 141 (300)
T ss_pred -------hhhhcccChhhhccCccCcHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHH
Confidence 55679999987654 3444433321 122222222111 1111234599999999999
Q ss_pred cccccccCCceEEccc------HHHHHHHHHHHHHHHHhHH
Q 020346 278 NNCLHLGEPGCVVKGD------WERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~~ 312 (327)
-.++ +|+|.++|+|+ |-..+.+...+.++++++.
T Consensus 142 isav-iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Ga 181 (300)
T COG4152 142 ISAV-IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 (300)
T ss_pred HHHH-hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCC
Confidence 9777 99999999984 4577777777777766654
No 219
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=3.7e-19 Score=182.59 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=105.1
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|+++.+
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g------------~~~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR------------HFDVSEGDIRFHDIPLTK 381 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCEEEECCEEHhh
Confidence 456778888864 46899999998 999999999999999999999999 999999999999999887
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhH---HhhhhHHH--------------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQS---LAQTFPEI--------------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~---l~~~~~~~--------------~~~LSgGq 271 (327)
.+... .+++++++||++ .+++.|+..+..+....-.... .....+.+ ...|||||
T Consensus 382 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq 456 (569)
T PRK10789 382 LQLDS-----WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ 456 (569)
T ss_pred CCHHH-----HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence 76443 677899999975 2344454443322111000000 00000111 12399999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++++++ +.+|.++++|||
T Consensus 457 ~qRi~lARal-l~~~~illlDEp 478 (569)
T PRK10789 457 KQRISIARAL-LLNAEILILDDA 478 (569)
T ss_pred HHHHHHHHHH-hcCCCEEEEECc
Confidence 9999999999 999999999965
No 220
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.75 E-value=2.1e-19 Score=168.48 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=106.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc--------ccceeecc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI--------LGSKWFED 206 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~--------~G~i~~~g 206 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|+ +|+|.++|
T Consensus 3 ~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG------------~~~p~~~~~~~~~~G~i~~~g 70 (272)
T PRK13547 3 TADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG------------DLTGGGAPRGARVTGDVTLNG 70 (272)
T ss_pred EEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCcccccccCCceEEEECC
Confidence 3567778888778999999998 999999999999999999999999 88898 99999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCC----CeEEeCcccCCc-c---ccccCH---hHHhhh---------hHHHHHh
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQP-S---LLKVTK---QSLAQT---------FPEIKEM 266 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~-~---l~~~~~---~~l~~~---------~~~~~~~ 266 (327)
.++...+... .++.++++||.+. .++.|+..+... . ...... ...... .......
T Consensus 71 ~~~~~~~~~~-----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (272)
T PRK13547 71 EPLAAIDAPR-----LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT 145 (272)
T ss_pred EEcccCCHHH-----HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9876543221 3445788998742 223333222100 0 000000 000110 0011234
Q ss_pred cCccccccccccccccc---------cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHL---------GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~---------~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|||||+||+.|++++ + .+|.++|+|+| ...+.+.+++.++..
T Consensus 146 LSgG~~qrv~laral-~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 202 (272)
T PRK13547 146 LSGGELARVQFARVL-AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR 202 (272)
T ss_pred CCHHHHHHHHHHHHH-hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999998 6 59999999965 455666667766644
No 221
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.8e-19 Score=168.73 Aligned_cols=161 Identities=13% Similarity=0.152 Sum_probs=106.0
Q ss_pred cCCceeeccCcch-----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 135 WGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+.++.+.++|++. .+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.+
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~ 74 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG------------LIISETGQTIVGDYA 74 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEE
Confidence 4466788888653 4899999998 999999999999999999999999 899999999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCH-------hHHhhh-------hHHHHHhcCc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTK-------QSLAQT-------FPEIKEMLKA 269 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~-------~~l~~~-------~~~~~~~LSg 269 (327)
+.............++.++|++|.+.. ++.++..+.... ..... .++... .......||+
T Consensus 75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~ 153 (289)
T PRK13645 75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSG 153 (289)
T ss_pred ccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCH
Confidence 742100000001145679999997521 122221111000 00000 011111 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+.+++++ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 154 Gq~qrv~laral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (289)
T PRK13645 154 GQKRRVALAGII-AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNK 198 (289)
T ss_pred HHHHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 345556666666643
No 222
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.75 E-value=4.7e-19 Score=163.69 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=103.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee-----e
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-----V 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~-----v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.+ +
T Consensus 5 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 5 QVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAG------------RLAPDHGTATYIMRSGAELEL 72 (253)
T ss_pred EEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEEeccccccccc
Confidence 3566777887777899999998 999999999999999999999999 889999999999876 4
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCeEE------eCccc-----CCcccccc--CHhHHhh-------hhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DTPGF-----NQPSLLKV--TKQSLAQ-------TFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~i~------Dtpg~-----~~~~l~~~--~~~~l~~-------~~~~~~~~LSg 269 (327)
...+... +.+...+.+++++|++...+. ++... ........ ...++.. ........|||
T Consensus 73 ~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSg 151 (253)
T TIGR02323 73 YQLSEAE-RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSG 151 (253)
T ss_pred ccCCHHH-HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCH
Confidence 3332110 000123568999997532111 11100 00000000 0000000 11111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| .-.+.+.++++++.
T Consensus 152 G~~qrv~laral-~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~ 195 (253)
T TIGR02323 152 GMQQRLQIARNL-VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195 (253)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 34455556666554
No 223
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.75 E-value=2.9e-17 Score=141.08 Aligned_cols=135 Identities=30% Similarity=0.365 Sum_probs=98.8
Q ss_pred cEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhh-cCCceeeccCcchhhHHHHHh
Q 020346 78 DHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 78 D~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~l~~l~~ 155 (327)
|++++|.++..|..+. ..+.+ ..+...++|+++|+||+|+.+.+....|...+.. .+..++.+|+.+..+++.+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 7889999998775443 23342 3345678999999999999877666666655544 345678889887776665544
Q ss_pred h------------------cCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 156 R------------------LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 156 ~------------------l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
. ..+.+++++|.||+|||||+|+|.+... .. .+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~-------------------------~~----~~ 129 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK-------------------------LK----VG 129 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc-------------------------cc----cc
Confidence 2 2457899999999999999999999321 01 23
Q ss_pred CcceeeEEEEEEEccCCCeEEeCccc
Q 020346 218 RGKHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
.++|+|+...+++...+.+++||||+
T Consensus 130 ~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 130 NVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred CCCCcccceEEEEecCCEEEEECCCC
Confidence 34568888888888777899999996
No 224
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.75 E-value=4.1e-19 Score=172.39 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=101.2
Q ss_pred eeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCC
Q 020346 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~ 218 (327)
+.++|++.. + ++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++....... .
T Consensus 5 l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaG------------l~~p~~G~I~~~g~~i~~~~~~~-~ 69 (354)
T TIGR02142 5 FSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAG------------LTRPDEGEIVLNGRTLFDSRKGI-F 69 (354)
T ss_pred EEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECccCcccc-c
Confidence 556666544 4 788887 899999999999999999999999 89999999999999875432100 0
Q ss_pred cceeeEEEEEEEccCCC----eEEeCcccCCccc-------------cccCHhHHhhhhHHHHHhcCccccccccccccc
Q 020346 219 GKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 219 g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
....++.++|++|++.. ++.++..+..... +.+.+....+.. ...|||||+||+++++++
T Consensus 70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---~~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL---PGRLSGGEKQRVAIGRAL 146 (354)
T ss_pred cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC---hhhCCHHHHHHHHHHHHH
Confidence 01134679999997532 2333332211000 001111111111 234999999999999999
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|.++++|+| ...+.+.++++++..
T Consensus 147 -~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~ 179 (354)
T TIGR02142 147 -LSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179 (354)
T ss_pred -HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 999999999955 455566666666644
No 225
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.75 E-value=8.9e-19 Score=160.62 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=106.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+.
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~i~i~g~~~~~~~~- 69 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG------------LEQPDSGRIRLNGQDATRVHA- 69 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEEcCcCCh-
Confidence 456777887778999999998 999999999999999999999999 889999999999988754321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccC----HhHHhhhhH---------HHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVT----KQSLAQTFP---------EIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~----~~~l~~~~~---------~~~~~LSgGq~q~~~~~ 278 (327)
.++.++|+||.+.. .+.++..+... ..... ...+.+.+. .....||+||+||+.++
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (237)
T TIGR00968 70 ------RDRKIGFVFQHYALFKHLTVRDNIAFGLE-IRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA 142 (237)
T ss_pred ------hhcCEEEEecChhhccCCcHHHHHHhHHH-hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 34578999987522 11222111100 00000 011111111 11134999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +..|.++++|+| .-.+.+.+++.++..
T Consensus 143 ral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 178 (237)
T TIGR00968 143 RAL-AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178 (237)
T ss_pred HHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999955 455666677777654
No 226
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.75 E-value=5e-19 Score=198.75 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=108.0
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.|+.++++|.. +.+|+++++.+ +|+++||||+||||||||+++|.| +++|++|+|.+||.++.
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r------------l~~~~~G~I~IdG~dI~ 1351 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR------------INESAEGEIIIDGLNIA 1351 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CccCCCCeEEECCEEcc
Confidence 3668899999964 46999999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhhh------HHH--------------HHhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQTF------PEI--------------KEML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~~------~~~--------------~~~L 267 (327)
.++... .+++++++||++ ++++.++..... ..+.+++.... +.+ -..|
T Consensus 1352 ~i~~~~-----LR~~i~iVpQdp~LF~gTIr~NLdp~~----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1422 (1522)
T TIGR00957 1352 KIGLHD-----LRFKITIIPQDPVLFSGSLRMNLDPFS----QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422 (1522)
T ss_pred ccCHHH-----HHhcCeEECCCCcccCccHHHHcCccc----CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcC
Confidence 998765 788999999986 344444432110 11111111110 001 1239
Q ss_pred CccccccccccccccccCCceEEcccH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||||+||+++|+++ +.+|+++|+||+
T Consensus 1423 SgGQrQrl~LARAL-Lr~~~ILiLDEa 1448 (1522)
T TIGR00957 1423 SVGQRQLVCLARAL-LRKTKILVLDEA 1448 (1522)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 99999999999999 999999999954
No 227
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.75 E-value=2e-19 Score=163.41 Aligned_cols=156 Identities=20% Similarity=0.272 Sum_probs=106.1
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|.+ ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~~~g~~~~ 79 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLEN------------FYQPQGGQVLLDGKPIS 79 (226)
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCcEEEECCCchH
Confidence 345677788864 36899999998 999999999999999999999999 88999999999998876
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--ccc-------cCHhHHhhhh--------HHHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--LLK-------VTKQSLAQTF--------PEIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--l~~-------~~~~~l~~~~--------~~~~~~LSgG 270 (327)
..+... ..+.+++++|.+.. ++.|+..+.... ... ....+....+ ......||||
T Consensus 80 ~~~~~~-----~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 154 (226)
T cd03248 80 QYEHKY-----LHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGG 154 (226)
T ss_pred HcCHHH-----HHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHH
Confidence 543211 34678999987522 222222111000 000 0000111111 1112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+.+++++ +.+|.++++|+| ...+.+.+++.++.
T Consensus 155 ~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 197 (226)
T cd03248 155 QKQRVAIARAL-IRNPQVLILDEATSALDAESEQQVQQALYDWP 197 (226)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999 999999999965 34555556666553
No 228
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.7e-19 Score=172.12 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=104.3
Q ss_pred CceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc----ccccceeecce
Q 020346 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE----PILGSKWFEDQ 207 (327)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~----p~~G~i~~~g~ 207 (327)
++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| +.+ |++|+|+|+|+
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~G------------l~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG------------VTKDNWRVTADRMRFDDI 73 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHc------------cCCCCCCCcceEEEECCE
Confidence 456667773 346899999998 999999999999999999999999 554 68999999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCCeEE------eCccc--C-----C----c----------cccccCHh---HHh
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DTPGF--N-----Q----P----------SLLKVTKQ---SLA 257 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~------Dtpg~--~-----~----~----------~l~~~~~~---~l~ 257 (327)
++...+.... .+...+.++|+||++..++. ++... . . . .++.+.+. +..
T Consensus 74 ~i~~~~~~~~-~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 152 (330)
T PRK15093 74 DLLRLSPRER-RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM 152 (330)
T ss_pred ECCcCCHHHH-HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH
Confidence 8866543210 01123579999998642211 11100 0 0 0 00011111 011
Q ss_pred hhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 258 QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 258 ~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+| ..|||||+||+.+++++ +.+|.++|+|+| .-.....++++++.+
T Consensus 153 ~~~p---~~LSgG~~QRv~iArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 206 (330)
T PRK15093 153 RSFP---YELTEGECQKVMIAIAL-ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ 206 (330)
T ss_pred hCCc---hhCCHHHHHHHHHHHHH-HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1222 24999999999999999 999999999965 344555666666644
No 229
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.7e-19 Score=177.45 Aligned_cols=152 Identities=17% Similarity=0.251 Sum_probs=102.4
Q ss_pred eeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCC
Q 020346 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~ 218 (327)
+...|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+....
T Consensus 34 ~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~G------------l~~p~sG~I~i~G~~i~~~~~~~l- 100 (400)
T PRK10070 34 ILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR------------LIEPTRGQVLIDGVDIAKISDAEL- 100 (400)
T ss_pred HHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHc------------CCCCCCCEEEECCEECCcCCHHHH-
Confidence 344444455789999998 899999999999999999999999 999999999999998876543210
Q ss_pred cceeeEEEEEEEccCCC----eEEeCcccCCc----c-----------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 219 GKHTTRHVSLLPLSGGG----YLADTPGFNQP----S-----------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 219 g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~----~-----------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
.+..++.++|++|.+.. ++.|+..+... . ++.+.+....+..+ ..|||||+||+.+++
T Consensus 101 ~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---~~LSgGq~QRv~LAr 177 (400)
T PRK10070 101 REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---DELSGGMRQRVGLAR 177 (400)
T ss_pred HHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---ccCCHHHHHHHHHHH
Confidence 00013468999997532 22233222100 0 00111111111222 349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
++ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 178 AL-~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~ 211 (400)
T PRK10070 178 AL-AINPDILLMDEAFSALDPLIRTEMQDELVKLQ 211 (400)
T ss_pred HH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 99 999999999965 34455555555554
No 230
>PTZ00243 ABC transporter; Provisional
Probab=99.74 E-value=5.9e-19 Score=198.22 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=106.5
Q ss_pred hcCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.|+.+.++|.. +.+|+++++.+ +|+++||||+||||||||+++|+| +++|++|+|.+||.++.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr------------l~~p~~G~I~IDG~di~ 1375 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR------------MVEVCGGEIRVNGREIG 1375 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEcc
Confidence 3668899999965 45999999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhhh-----HH-H--------------HHhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQTF-----PE-I--------------KEML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~~-----~~-~--------------~~~L 267 (327)
.++... .++.++++||++ ++++.++.-... ..+.+++.... .+ + -..|
T Consensus 1376 ~i~l~~-----LR~~I~iVpQdp~LF~gTIreNIdp~~----~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nL 1446 (1560)
T PTZ00243 1376 AYGLRE-----LRRQFSMIPQDPVLFDGTVRQNVDPFL----EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNY 1446 (1560)
T ss_pred cCCHHH-----HHhcceEECCCCccccccHHHHhCccc----CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcC
Confidence 987655 788999999985 334444432111 11111111110 01 1 1249
Q ss_pred CccccccccccccccccC-CceEEcccH
Q 020346 268 KANEPAKCSFNNCLHLGE-PGCVVKGDW 294 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~e-p~~~v~~~~ 294 (327)
||||+||+++|+++ +.+ |.++|+||+
T Consensus 1447 SgGQrQrLaLARAL-L~~~~~ILlLDEA 1473 (1560)
T PTZ00243 1447 SVGQRQLMCMARAL-LKKGSGFILMDEA 1473 (1560)
T ss_pred CHHHHHHHHHHHHH-hcCCCCEEEEeCC
Confidence 99999999999999 875 899999954
No 231
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.74 E-value=1.2e-18 Score=148.37 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=89.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G------------~~~~~~G~i~~~~~-------- 62 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG------------ELEPDEGIVTWGST-------- 62 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCceEEEECCe--------
Confidence 456677776667899999998 999999999999999999999999 89999999999873
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
..++|++| ||+||+||+.+++++ +.+|.++++|+|.
T Consensus 63 --------~~i~~~~~-----------------------------------lS~G~~~rv~laral-~~~p~illlDEP~ 98 (144)
T cd03221 63 --------VKIGYFEQ-----------------------------------LSGGEKMRLALAKLL-LENPNLLLLDEPT 98 (144)
T ss_pred --------EEEEEEcc-----------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 25677776 999999999999999 9999999999653
Q ss_pred ------HHHHHHHHHHHH
Q 020346 296 ------RYQYYFQLLDEI 307 (327)
Q Consensus 296 ------r~~~~~~ll~e~ 307 (327)
....+.++++++
T Consensus 99 ~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 99 NHLDLESIEALEEALKEY 116 (144)
T ss_pred cCCCHHHHHHHHHHHHHc
Confidence 444444555543
No 232
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=8.2e-19 Score=164.00 Aligned_cols=158 Identities=13% Similarity=0.225 Sum_probs=106.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|.++|.+
T Consensus 14 l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~~~p~~G~v~~~g~~ 81 (269)
T PRK14259 14 ISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR------------MNDLIEGCSLKGRVLFDGTD 81 (269)
T ss_pred EEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccccCCCCCceEEEECCEE
Confidence 44677888888778999999998 999999999999999999999999 665 699999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cccccCHhHHhhhh-------------HHHHHhcCcc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLLKVTKQSLAQTF-------------PEIKEMLKAN 270 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~~~~~~~l~~~~-------------~~~~~~LSgG 270 (327)
+...+... ...++.++|+||.+..+ +.|+..+... .......+...... ......||+|
T Consensus 82 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 158 (269)
T PRK14259 82 LYDPRVDP---VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGG 158 (269)
T ss_pred cccccCCH---HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHH
Confidence 75321100 11345799999975322 2222211100 00000000001100 1112349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+++++++ +.+|.++++|+| .....+.++++++.
T Consensus 159 ~~qrl~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 201 (269)
T PRK14259 159 QQQRLCIARTI-AIEPEVILMDEPCSALDPISTLKIEETMHELK 201 (269)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999 999999999965 45555566666663
No 233
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=6.6e-19 Score=163.33 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=105.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++| ++|+|.++|.+
T Consensus 5 l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG------------l~~~~~~~~~~G~I~~~g~~ 72 (258)
T PRK14241 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR------------MHEVIPGARVEGEVLLDGED 72 (258)
T ss_pred EEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc------------cCCcccCCCcceEEEECCEe
Confidence 34577888887778999999998 999999999999999999999999 6653 79999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hHHhhh----------hHHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QSLAQT----------FPEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~l~~~----------~~~~~~~L 267 (327)
+...+... ...++.+++++|.... ++.|+..+.......... .++... .......|
T Consensus 73 ~~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 149 (258)
T PRK14241 73 LYGPGVDP---VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGL 149 (258)
T ss_pred ccccccCh---HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC
Confidence 74321100 0145679999987432 222222111000000000 011100 01112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+++++++ +.+|.++++|+| .....+.++++++.
T Consensus 150 S~G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (258)
T PRK14241 150 SGGQQQRLCIARAI-AVEPDVLLMDEPCSALDPISTLAIEDLINELK 195 (258)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999 899999999955 45566667777663
No 234
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.74 E-value=1.1e-18 Score=171.53 Aligned_cols=159 Identities=12% Similarity=0.157 Sum_probs=121.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.++..|+.-.+.+++++.+ +|++.+|+|.||||||||+|+|.| +|+|++|+|+++|+++.--++.
T Consensus 7 ~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G------------~~~P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 7 MRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG------------LYQPDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred EeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC------------cccCCcceEEECCEEeccCCHH
Confidence 456778888888999999998 999999999999999999999999 9999999999999999877765
Q ss_pred CCCcceeeEEEEEEEccC----CCeEEeCcccCCcc--ccccCHhHHhhhhHHH-------------HHhcCcccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPS--LLKVTKQSLAQTFPEI-------------KEMLKANEPAKCS 276 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~--l~~~~~~~l~~~~~~~-------------~~~LSgGq~q~~~ 276 (327)
.. .+..|+||+|.+ +.++.++..+.... ...++.........++ ...||-||+||+.
T Consensus 75 dA----~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 75 DA----IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE 150 (501)
T ss_pred HH----HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH
Confidence 54 678899999964 33444444433322 1122222222222222 2238999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHHhHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~~ 312 (327)
+-.|+ ...|+++|+|+| +-.+.++.+++.++..++
T Consensus 151 IlKaL-yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~ 191 (501)
T COG3845 151 ILKAL-YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191 (501)
T ss_pred HHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 99999 999999999975 577778888888777665
No 235
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.74 E-value=1e-18 Score=152.05 Aligned_cols=127 Identities=24% Similarity=0.268 Sum_probs=94.2
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|. ++.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~~~------- 63 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG------------LWPWGSGRIGMPEG------- 63 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCC-------
Confidence 456677774 356899999998 999999999999999999999999 88999999998652
Q ss_pred cCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+.++|++|++.. +.....+++... ....||+||+||+.+++++ +.+|.++++|+|
T Consensus 64 ---------~~i~~~~q~~~~-------~~~tv~~nl~~~--------~~~~LS~G~~~rv~laral-~~~p~~lllDEP 118 (166)
T cd03223 64 ---------EDLLFLPQRPYL-------PLGTLREQLIYP--------WDDVLSGGEQQRLAFARLL-LHKPKFVFLDEA 118 (166)
T ss_pred ---------ceEEEECCCCcc-------ccccHHHHhhcc--------CCCCCCHHHHHHHHHHHHH-HcCCCEEEEECC
Confidence 468899986321 111222222111 1234999999999999999 999999999965
Q ss_pred ------HHHHHHHHHHHHH
Q 020346 295 ------ERYQYYFQLLDEI 307 (327)
Q Consensus 295 ------~r~~~~~~ll~e~ 307 (327)
...+.+.++++++
T Consensus 119 t~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 119 TSALDEESEDRLYQLLKEL 137 (166)
T ss_pred ccccCHHHHHHHHHHHHHh
Confidence 3444444555543
No 236
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=5.4e-19 Score=171.48 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=100.8
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.+.++|++.. + ++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++.......
T Consensus 5 ~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaG------------l~~p~~G~I~~~g~~~~~~~~~~- 69 (352)
T PRK11144 5 NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISG------------LTRPQKGRIVLNGRVLFDAEKGI- 69 (352)
T ss_pred EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEcccccccc-
Confidence 3556666543 2 788887 899999999999999999999999 89999999999998875422100
Q ss_pred CcceeeEEEEEEEccCCC----eEEeCcccCCcc---------ccccCHhHHhhhhHHHHHhcCcccccccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
..+...+.++|++|+... ++.|+..+.... ++.+......+..+ ..|||||+||+++++++ +.
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---~~LSgGq~qRvalaraL-~~ 145 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP---GSLSGGEKQRVAIGRAL-LT 145 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc---ccCCHHHHHHHHHHHHH-Hc
Confidence 000134679999997522 223333221100 01111111112222 34999999999999999 99
Q ss_pred CCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|+++++|+| ...+.+.++++++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~ 176 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAR 176 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999965 344555566666543
No 237
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.7e-19 Score=180.90 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=107.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++...+.
T Consensus 6 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSG------------NYQPDAGSILIDGQEMRFAST 73 (501)
T ss_pred EEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEECCCCCH
Confidence 3566777887777999999998 999999999999999999999999 889999999999988754321
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCc-cc-cccCH----hHHhhh---------hHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP-SL-LKVTK----QSLAQT---------FPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~-~l-~~~~~----~~l~~~---------~~~~~~~LSgGq~q~~ 275 (327)
.. ..+++++|++|.+.. ++.|+..+... .. ..... ..+... .......|||||+||+
T Consensus 74 ~~----~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 74 TA----ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred HH----HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHH
Confidence 11 134578999997522 23333222110 00 00000 011110 1111234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.|++++ +.+|.++|+|+| .-.+.+.+++.++..
T Consensus 150 ~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (501)
T PRK11288 150 EIAKAL-ARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188 (501)
T ss_pred HHHHHH-HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999 899999999965 345555666666643
No 238
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.74 E-value=6e-19 Score=165.73 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=100.1
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|.| +++ ++|+|+++|.++..
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~g------------l~~-~~G~I~i~g~~i~~ 69 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLR------------LLN-TEGDIQIDGVSWNS 69 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------------hcC-CCcEEEECCEEhhh
Confidence 44678888883 456899999998 999999999999999999999999 776 78999999999876
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcc-cCCcc-------ccccCHhHHhhhhHHH--------HHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPG-FNQPS-------LLKVTKQSLAQTFPEI--------KEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg-~~~~~-------l~~~~~~~l~~~~~~~--------~~~LSgGq~ 272 (327)
.+... .++.++|+||++.. ++.|+.. +.... ++.+.+......+|.- ...||+||+
T Consensus 70 ~~~~~-----lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 70 VPLQK-----WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred CCHHH-----HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 65432 46789999997632 2223321 11000 0111111111111110 012999999
Q ss_pred ccccccccccccCCceEEcccH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||+.+++++ +.+|+++|+|+|
T Consensus 145 qrl~LaRal-l~~p~illlDEp 165 (275)
T cd03289 145 QLMCLARSV-LSKAKILLLDEP 165 (275)
T ss_pred HHHHHHHHH-hcCCCEEEEECc
Confidence 999999999 999999999965
No 239
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=3.5e-19 Score=165.26 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=106.8
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ ..+++++++.+ +|+.++|+|+||+|||||+++|+| +++|++|+|.++|.++..
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFR------------MVDIFDGKIVIDGIDISK 87 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------ccCCCCCeEEECCEEhhh
Confidence 456778888865 56899999998 999999999999999999999999 889999999999998866
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc----cc----ccCHhHHhhhhH--------HHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS----LL----KVTKQSLAQTFP--------EIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~----l~----~~~~~~l~~~~~--------~~~~~LSgGq~ 272 (327)
.+... .++.++|++|.+.. ++.++....... .. ..........++ .....||+||+
T Consensus 88 ~~~~~-----~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 88 LPLHT-----LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred CCHHH-----HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 54322 45678999987532 111221111000 00 000111111111 00124999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+.+++++ +.+|+++++|+| ...+.+.++++++
T Consensus 163 qrl~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 163 QLFCLARAF-VRKSSILIMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 999999999 999999999855 4555555666554
No 240
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.74 E-value=4e-19 Score=161.59 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=104.2
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc---ccccceeeccee
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQR 208 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~ 208 (327)
++.+.+.|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G------------~~~~~~~~~G~i~~~g~~ 73 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG------------RVEGGGTTSGQILFNGQP 73 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhC------------ccCCCCCCceEEEECCEE
Confidence 4556666643 57899999998 999999999999999999999999 777 999999999987
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCC----cc--ccccCHhHHhh-hhH---------HHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ----PS--LLKVTKQSLAQ-TFP---------EIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~----~~--l~~~~~~~l~~-~~~---------~~~~~LS 268 (327)
+... ..++.+++++|++.. ++.|+..+.. .. ........... ..+ .....||
T Consensus 74 ~~~~--------~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 145 (226)
T cd03234 74 RKPD--------QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGIS 145 (226)
T ss_pred CChH--------HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcC
Confidence 6421 145679999987532 2222221100 00 00000000000 111 1123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+||+||+.+++++ +.+|.++++|+| .....+.+++.++.+.
T Consensus 146 ~G~~qrl~laral-~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~ 192 (226)
T cd03234 146 GGERRRVSIAVQL-LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192 (226)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 9999999999999 999999999955 4566666777776543
No 241
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.2e-18 Score=162.45 Aligned_cols=158 Identities=12% Similarity=0.174 Sum_probs=106.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ |++|+|.++|.+
T Consensus 22 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 89 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR------------MNDLIPSARSEGEILYEGLN 89 (268)
T ss_pred EEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------cccccCCCCCceEEEECCEE
Confidence 45678888888788999999998 999999999999999999999999 543 799999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCc--cc-c-ccCHhHHhh-------------hhHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQP--SL-L-KVTKQSLAQ-------------TFPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~--~l-~-~~~~~~l~~-------------~~~~~~~~LS 268 (327)
+...+... ....++++|++|.+.. ++.|+..+... .. . ......... ........||
T Consensus 90 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 166 (268)
T PRK14248 90 ILDSNINV---VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLS 166 (268)
T ss_pred cccccccH---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCC
Confidence 75422110 0135679999997532 22222211100 00 0 000000000 0011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|+++++|+| ...+...+++.++.
T Consensus 167 gGq~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 211 (268)
T PRK14248 167 GGQQQRLCIARTL-AMKPAVLLLDEPASALDPISNAKIEELITELK 211 (268)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999955 45555666666663
No 242
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.6e-18 Score=160.25 Aligned_cols=157 Identities=13% Similarity=0.239 Sum_probs=104.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ | ++|+|.++|.++
T Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~~ 75 (253)
T PRK14261 8 STKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR------------MNDLIPGCRITGDILYNGENI 75 (253)
T ss_pred EEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc------------cccCCCCCCcceEEEECCEEc
Confidence 4567777887778999999998 999999999999999999999999 544 3 589999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcccc--c-cC-HhHHhh-------------hhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLL--K-VT-KQSLAQ-------------TFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~--~-~~-~~~l~~-------------~~~~~~~~LSg 269 (327)
...+... ...++.++|++|.+..+ +.|+..+...... . .. ...+.. ........||+
T Consensus 76 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 152 (253)
T PRK14261 76 MDSGADV---VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSG 152 (253)
T ss_pred cccccch---hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCH
Confidence 6542110 01356799999975332 1222211100000 0 00 000110 01112234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| .-.+.+.++++++.
T Consensus 153 G~~qrv~laral-~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~ 196 (253)
T PRK14261 153 GQQQRLCIARTL-AVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196 (253)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999 999999999965 34455556666654
No 243
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.5e-18 Score=160.02 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=104.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ | ++|+|+++|.+
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR------------MNDLIPSVKIEGEVLLDGQD 71 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccccCCCCCceEEEECCEE
Confidence 34567888887778999999998 999999999999999999999999 554 3 79999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcccccc-C----Hh---HHhhhh----------HHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKV-T----KQ---SLAQTF----------PEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~-~----~~---~l~~~~----------~~~~~~L 267 (327)
+...+... ...+..+++++|.+..+ +.++..+... .... . .. ++...+ ......|
T Consensus 72 ~~~~~~~~---~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 147 (250)
T PRK14240 72 IYKSDIDV---NQLRKRVGMVFQQPNPFPMSIYDNVAYGPR-THGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL 147 (250)
T ss_pred ccccccch---HHHhccEEEEecCCccCcccHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCC
Confidence 75421100 01356799999975321 2222211100 0000 0 00 000010 1112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+||+++++++ +.+|.++++|+| ...+...++++++.
T Consensus 148 S~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14240 148 SGGQQQRLCIARAL-AVEPEVLLMDEPTSALDPISTLKIEELIQELK 193 (250)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999965 34445556666653
No 244
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.6e-19 Score=175.50 Aligned_cols=142 Identities=20% Similarity=0.289 Sum_probs=110.1
Q ss_pred cCCceeeccCcchh--hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++|+|.+++ +++++++.+ +|+.++|+|+||||||||+++|.| .|+|++|+|.++|.++..
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~------------~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG------------AWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh------------ccCCCCCeeeECCcChhh
Confidence 56788999997654 999999998 999999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcc---------ccccCHhHHhhhhHHH--------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPS---------LLKVTKQSLAQTFPEI--------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~--------~~~LSgGq 271 (327)
++.+. .+..+++++|.. .+++.||.....+. ++.+..+++....|+= -+.|||||
T Consensus 405 l~~~~-----~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 405 LDEQA-----LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred CChhh-----HHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 88754 566788899975 33455554444332 2233333333333321 12399999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++++.+ +++..+.++|+|
T Consensus 480 ~rRLAlAR~L-L~dapl~lLDEP 501 (573)
T COG4987 480 RRRLALARAL-LHDAPLWLLDEP 501 (573)
T ss_pred HHHHHHHHHH-HcCCCeEEecCC
Confidence 9999999999 888889998855
No 245
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.2e-18 Score=162.56 Aligned_cols=158 Identities=11% Similarity=0.174 Sum_probs=106.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.+
T Consensus 21 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 88 (267)
T PRK14237 21 LSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR------------MNDTIDIARVTGQILYRGID 88 (267)
T ss_pred EEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------ccCccCCCCcceEEEECCEE
Confidence 45677888887778999999998 999999999999999999999999 665 689999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCH----hHH---hhh----------hHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTK----QSL---AQT----------FPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~----~~l---~~~----------~~~~~~~LS 268 (327)
+...+.. ....++.++++||.+.. .+.|+..+.......... ..+ ... .......||
T Consensus 89 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 165 (267)
T PRK14237 89 INRKEIN---VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLS 165 (267)
T ss_pred cccccCC---hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCC
Confidence 7532110 01135679999997532 222222111000000000 000 000 011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+++++++ +..|.++++|+| ...+.+.+++.++.
T Consensus 166 ~G~~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 210 (267)
T PRK14237 166 GGQQQRLCIARAI-AVKPDILLMDEPASALDPISTMQLEETMFELK 210 (267)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999955 45566666666663
No 246
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.2e-18 Score=163.70 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=107.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|+++|.+
T Consensus 22 l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR------------MNDKVSGYRYSGDVLLGGRS 89 (276)
T ss_pred EEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------cCCcCCCCCCceEEEECCEE
Confidence 34677888888888999999998 999999999999999999999999 7775 79999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccCHhHH-------hhh----------hHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTKQSL-------AQT----------FPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~~~~l-------~~~----------~~~~~~~LS 268 (327)
+...+... ..+..++|++|.+..+ +.++..+...........+. ... .......||
T Consensus 90 i~~~~~~~----~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS 165 (276)
T PRK14271 90 IFNYRDVL----EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLS 165 (276)
T ss_pred ccccchhH----HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCC
Confidence 76432111 1456789999975322 22222111000000010000 000 011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+.+++++ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 166 gGq~qrl~LAral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 210 (276)
T PRK14271 166 GGQQQLLCLARTL-AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210 (276)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999965 35555566666654
No 247
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.73 E-value=2.3e-18 Score=172.67 Aligned_cols=145 Identities=21% Similarity=0.296 Sum_probs=102.6
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..+++++||.+ +|++++|||+||||||||.++|+| +.+|++|+|.++|.+ ...+ .+..+..++.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g------------L~~P~~G~i~~~g~~-~~~~--~~~~~~~r~~ 368 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG------------LLPPSSGSIIFDGQD-LDLT--GGELRRLRRR 368 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEEeCcc-cccc--cchhhhhhhh
Confidence 35789999998 999999999999999999999999 999999999999988 3333 2223346778
Q ss_pred EEEEEccCCCeE------EeC---c-ccCCcc------------ccccCH-hHHhhhhHHHHHhcCcccccccccccccc
Q 020346 226 VSLLPLSGGGYL------ADT---P-GFNQPS------------LLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 226 i~~v~q~~~~~i------~Dt---p-g~~~~~------------l~~~~~-~~l~~~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
+++++|++...+ .+. | .+.... ++.+.+ .+....+|.. |||||+||++||+++
T Consensus 369 ~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e---lSGGQrQRvaIARAL- 444 (539)
T COG1123 369 IQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE---LSGGQRQRVAIARAL- 444 (539)
T ss_pred eEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh---cCcchhHHHHHHHHH-
Confidence 999999863221 111 1 111000 111111 1233444444 999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
..+|.++|.|++ .-......++.++.++
T Consensus 445 a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e 478 (539)
T COG1123 445 ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478 (539)
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH
Confidence 999999999854 4555556666666544
No 248
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.73 E-value=1.9e-18 Score=158.47 Aligned_cols=148 Identities=13% Similarity=0.147 Sum_probs=98.6
Q ss_pred ccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcc
Q 020346 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~ 220 (327)
.+|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.++.....
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~~~~~~~------ 90 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG------------LLQPTSGEVRVAGLVPWKRRK------ 90 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCEEccccch------
Confidence 3455667899999998 999999999999999999999999 889999999999987543221
Q ss_pred eeeEEEEEEEcc-CCC----eEEeCcccCCccccccCHh-------HHhh------hhHHHHHhcCcccccccccccccc
Q 020346 221 HTTRHVSLLPLS-GGG----YLADTPGFNQPSLLKVTKQ-------SLAQ------TFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 221 ~tt~~i~~v~q~-~~~----~i~Dtpg~~~~~l~~~~~~-------~l~~------~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
.....++|+++. +.. ++.|+..+.. .+...... .+.+ ........||+||+||+.+++++
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al- 168 (236)
T cd03267 91 KFLRRIGVVFGQKTQLWWDLPVIDSFYLLA-AIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAAL- 168 (236)
T ss_pred hhcccEEEEcCCccccCCCCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH-
Confidence 145678888743 211 1112111100 00000000 0111 01111234999999999999999
Q ss_pred ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 283 LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 283 ~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+.+|+++++|+| .-.+.+.+++.++..
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 201 (236)
T cd03267 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201 (236)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999965 455556666666643
No 249
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.9e-18 Score=159.60 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=104.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-----ccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|+ +|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 6 KIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNR------------MNDIVSGARLEGAVLLDNENI 73 (251)
T ss_pred EEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCccccCCcccEEEECCEEc
Confidence 3567778887777999999998 999999999999999999999999 77776 69999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccC----H-hHHh---h----------hhHHHHHhcC
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVT----K-QSLA---Q----------TFPEIKEMLK 268 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~----~-~~l~---~----------~~~~~~~~LS 268 (327)
...+... ...++.++|+||++.. ++.|+..+... ..... . .... . ........||
T Consensus 74 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 149 (251)
T PRK14249 74 YSPNLDV---VNLRKRVGMVFQQPNPFPKSIFDNVAFGPR-MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALS 149 (251)
T ss_pred cccccCh---HHhhceEEEEecCCccCcCcHHHHHhhHHH-hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCC
Confidence 5322110 0145679999998532 22222221100 00000 0 0000 0 0011122399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+||+++++++ +.+|+++|+|+| .....+.++++++
T Consensus 150 ~Gq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14249 150 GGQQQRLCIARVL-AIEPEVILMDEPCSALDPVSTMRIEELMQEL 193 (251)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999 999999999965 3445555666666
No 250
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.1e-18 Score=157.34 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=100.9
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.+.++|++..+ ++++.+ + ++++|+|+||+|||||+++|+| +++|++|+|+++|.++........
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAG------------LEKPDGGTIVLNGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEecccccchhh
Confidence 46677877655 999998 7 9999999999999999999999 889999999999988753221000
Q ss_pred CcceeeEEEEEEEccCCC----eEEeCcccCCcccc-ccCHhHHhhh---------hHHHHHhcCccccccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLL-KVTKQSLAQT---------FPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~-~~~~~~l~~~---------~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
.....+.+++++|.+.. ++.|+..+...... .......... .......|||||+||+.+++++ +
T Consensus 70 -~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-~ 147 (214)
T cd03297 70 -LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL-A 147 (214)
T ss_pred -hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH-h
Confidence 01134578999997532 22222211100000 0000000000 0111234999999999999999 9
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+|.++++|+| ...+.+.+++.++..
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKK 179 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999965 455556666666644
No 251
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.3e-18 Score=160.47 Aligned_cols=157 Identities=12% Similarity=0.159 Sum_probs=104.4
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-----ccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+|+|+| +++|+ +|+|+++|.++
T Consensus 6 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 6 SAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINR------------MHDLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCcCCCCceeEEECCEEc
Confidence 3566777887778999999998 999999999999999999999999 77664 89999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCC--ccccccC--Hh---HHh----------hhhHHHHHhcC
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ--PSLLKVT--KQ---SLA----------QTFPEIKEMLK 268 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~--~~l~~~~--~~---~l~----------~~~~~~~~~LS 268 (327)
...+... ...+..++|++|.+.. ++.|+..+.. .....-. .+ .+. .........||
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 150 (252)
T PRK14272 74 YGPRVDP---VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLS 150 (252)
T ss_pred ccCccCH---HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCC
Confidence 5421110 0145679999997522 2222221100 0000000 00 000 00011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+++++++ +.+|.++++|+| ...+.+.++++++.
T Consensus 151 ~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 151 GGQQQRLCIARAL-AVEPEILLMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 34555556666653
No 252
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.73 E-value=2.4e-18 Score=159.33 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=103.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc----cccceeecceee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRV 209 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p----~~G~i~~~g~~v 209 (327)
+.++.+.++| +..+++++++.+ +|++++|+|+||||||||+++|+| +.+| ++|+|+++|.++
T Consensus 5 l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 5 IELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG------------ILPAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCcCCEEEECCeec
Confidence 3456677777 557899999998 999999999999999999999999 7788 999999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCeEE--eCcc----c--CCccccccCHhHHhhhh------------HHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLA--DTPG----F--NQPSLLKVTKQSLAQTF------------PEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~i~--Dtpg----~--~~~~l~~~~~~~l~~~~------------~~~~~~LSg 269 (327)
... .. ..+.++|++|++...+. .+.. + ...... .....+.... ......||+
T Consensus 72 ~~~---~~----~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~ 143 (254)
T PRK10418 72 APC---AL----RGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP-ADDATLTAALEAVGLENAARVLKLYPFEMSG 143 (254)
T ss_pred ccc---cc----ccceEEEEecCCccccCccccHHHHHHHHHHHcCCC-hHHHHHHHHHHHcCCCChhhhhhcCCcccCH
Confidence 521 11 34579999997531111 0100 0 000000 0001111100 111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+.+++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 144 Gq~qrv~laral-~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~ 188 (254)
T PRK10418 144 GMLQRMMIALAL-LCEAPFIIADEPTTDLDVVAQARILDLLESIVQ 188 (254)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 455556666666543
No 253
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.73 E-value=7.2e-19 Score=162.22 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=105.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|+++|.++...+
T Consensus 8 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----------~~~~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHP----------AYKILEGDILFKGESILDLE 77 (252)
T ss_pred EEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCC----------cCcCCCceEEECCEEcccCC
Confidence 34567777787667999999998 99999999999999999999999921 16899999999999887654
Q ss_pred ccCCCcceeeEEEEEEEccCCCe----EEeCcccCC-c-----cccccCH-------hHHhhh--h-HH----HHH-hcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGY----LADTPGFNQ-P-----SLLKVTK-------QSLAQT--F-PE----IKE-MLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~~-~-----~l~~~~~-------~~l~~~--~-~~----~~~-~LS 268 (327)
.... ....+++++|.+..+ ..+...+.. . ....... .++... . +. ... .||
T Consensus 78 ~~~~----~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS 153 (252)
T CHL00131 78 PEER----AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFS 153 (252)
T ss_pred hhhh----heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCC
Confidence 3221 223577888864221 111110000 0 0000000 000000 0 01 112 399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|||+||+.+++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 154 gG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 199 (252)
T CHL00131 154 GGEKKRNEILQMA-LLDSELAILDETDSGLDIDALKIIAEGINKLMT 199 (252)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 355556666766654
No 254
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.73 E-value=4.8e-19 Score=170.48 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=105.1
Q ss_pred CCceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecce
Q 020346 136 GYEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~ 207 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| +++|+ +|+|+|+|.
T Consensus 14 ~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~G------------l~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 14 DVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG------------LLAANGRIGGSATFNGR 81 (330)
T ss_pred EEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHc------------CCCCCCCCCeEEEECCE
Confidence 3456666663 246899999998 999999999999999999999999 88885 999999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCCeE------EeCcc----cCC-cc-----------ccccCHhH---HhhhhHH
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYL------ADTPG----FNQ-PS-----------LLKVTKQS---LAQTFPE 262 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i------~Dtpg----~~~-~~-----------l~~~~~~~---l~~~~~~ 262 (327)
++...+....+ +...+.++|+||++...+ .++.. ... .. ++.+.+.+ ....+|
T Consensus 82 ~i~~~~~~~~~-~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p- 159 (330)
T PRK09473 82 EILNLPEKELN-KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP- 159 (330)
T ss_pred ECCcCCHHHHH-HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc-
Confidence 98766533210 011357999999852111 11100 000 00 00011000 011122
Q ss_pred HHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 263 ~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
..|||||+||+.+++++ +.+|+++|.|+| .......++++++.+
T Consensus 160 --~~LSgG~~QRv~IArAL-~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (330)
T PRK09473 160 --HEFSGGMRQRVMIAMAL-LCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209 (330)
T ss_pred --ccCCHHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 23999999999999999 999999999965 345555666666654
No 255
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.73 E-value=2.7e-18 Score=160.41 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=105.0
Q ss_pred CceeeccCc---------chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 137 YEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~---------~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
++.+.++|. +..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~sG~i~~~g 73 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG------------LESPSQGNVSWRG 73 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECC
Confidence 456667775 357899999998 999999999999999999999999 8899999999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEE------eCcccCCccccccCHh----HHhhhh------HH----HHHh
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DTPGFNQPSLLKVTKQ----SLAQTF------PE----IKEM 266 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~------Dtpg~~~~~l~~~~~~----~l~~~~------~~----~~~~ 266 (327)
.++....... .....+.++|++|++...+. ++..+....+..+... .+.... +. ....
T Consensus 74 ~~~~~~~~~~--~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 151 (268)
T PRK10419 74 EPLAKLNRAQ--RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ 151 (268)
T ss_pred EeccccChhH--HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCcc
Confidence 9876543211 01135679999997421111 1110000000000000 011100 01 1123
Q ss_pred cCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+||+.+++++ +.+|+++|+|+| .-.+...++++++..
T Consensus 152 LS~Ge~qrl~laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~ 199 (268)
T PRK10419 152 LSGGQLQRVCLARAL-AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199 (268)
T ss_pred CChHHHHHHHHHHHH-hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999965 344556666666644
No 256
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=6e-19 Score=163.74 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=105.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.+.|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|+++|.+
T Consensus 13 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------l~~~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR------------MNDLIKNCRIEGKVSIEGED 80 (258)
T ss_pred EEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCcccCCCcceEEEECCEE
Confidence 34567777887777999999998 999999999999999999999999 6664 89999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccCH-------hHHhhhh----------HHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTK-------QSLAQTF----------PEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~~-------~~l~~~~----------~~~~~~LS 268 (327)
+...+... ...++.++|++|.+..+ +.++..+... ...... .++.+.+ ......||
T Consensus 81 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 156 (258)
T PRK14268 81 IYEPDVDV---VELRKNVGMVFQKPNPFPMSIYDNVAYGPR-IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLS 156 (258)
T ss_pred cccccchH---HHHhhhEEEEecCCccCcccHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCC
Confidence 75422100 01346799999975321 2222211100 000000 0111110 11123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|.++++|+| .....+.++++++.
T Consensus 157 gG~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~ 201 (258)
T PRK14268 157 GGQQQRLCIARTL-AVKPKIILFDEPTSALDPISTARIEDLIMNLK 201 (258)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 34555566666663
No 257
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=2.9e-19 Score=159.12 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=97.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.++..++ +++.+ +|++++|+|+||+|||||+++|+| +.+|++|+|+++|.++...+
T Consensus 4 ~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~i~~~~-- 68 (195)
T PRK13541 4 LHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAG------------IMQPSSGNIYYKNCNINNIA-- 68 (195)
T ss_pred EEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCcccChhh--
Confidence 456667776655554 88887 999999999999999999999999 88999999999998775432
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCcccccc-CHh------HHhhhhHHHHHhcCcccccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKV-TKQ------SLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~-~~~------~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
...++++++... .++.|+..+........ ... .+..........||+||+||+.+++++ +.
T Consensus 69 -------~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al-~~ 140 (195)
T PRK13541 69 -------KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI-AC 140 (195)
T ss_pred -------hhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHH-hc
Confidence 123677777532 12223222111000000 001 111111122345999999999999999 99
Q ss_pred CCceEEcccH------HHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+|.++++|+| .-.+.+.+++++.
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~ 169 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMK 169 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999855 3445555555544
No 258
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=8.3e-19 Score=156.36 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=98.1
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
.++++++...+..++++++.+ +|+..+|+||||+|||||++.|+| ...|++|++.++|.+....+..
T Consensus 4 a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsG------------el~p~~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 4 AENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG------------ELSPDSGEVTLNGVPLNSWPPE 71 (259)
T ss_pred eeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhC------------ccCCCCCeEeeCCcChhhCCHH
Confidence 456777778899999999998 999999999999999999999999 7899999999999999888765
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------cc-------cCHhHHhhhhHHHHHhcCccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------LK-------VTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------~~-------~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
. ..++.+.+||.... ++.|...+..... ++ +...++..........|||||+||+.|
T Consensus 72 ~-----lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVql 146 (259)
T COG4559 72 E-----LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQL 146 (259)
T ss_pred H-----HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHH
Confidence 4 45677788986422 1222222211110 00 000011111122234499999999999
Q ss_pred ccccc-ccCC----ceEEcccHH
Q 020346 278 NNCLH-LGEP----GCVVKGDWE 295 (327)
Q Consensus 278 ~~~~h-~~ep----~~~v~~~~~ 295 (327)
++.+- +..| ..+++|+|.
T Consensus 147 ARvLaQl~~~v~~~r~L~LDEPt 169 (259)
T COG4559 147 ARVLAQLWPPVPSGRWLFLDEPT 169 (259)
T ss_pred HHHHHHccCCCCCCceEEecCCc
Confidence 98331 3333 377888764
No 259
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=1.7e-18 Score=155.00 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=90.1
Q ss_pred CceeeccCcch-----hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++.+.++|.+. .+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G------------~~~~~~G~i~~~g---- 66 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG------------ELEKLSGSVSVPG---- 66 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC------------cCCCCCCeEEEcC----
Confidence 45677778653 6899999998 999999999999999999999999 8999999999987
Q ss_pred cccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCcccc-cc-------CHhHHhhhhH--------HHHHhcCccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLL-KV-------TKQSLAQTFP--------EIKEMLKANE 271 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~-~~-------~~~~l~~~~~--------~~~~~LSgGq 271 (327)
.++|++|++. .++.|+..+...... .. ........++ .....||+||
T Consensus 67 --------------~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~ 132 (204)
T cd03250 67 --------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQ 132 (204)
T ss_pred --------------EEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHH
Confidence 3677777642 222233322111000 00 0000000000 0113499999
Q ss_pred cccccccccccccCCceEEcccHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+||+.+++++ +.+|.++++|+|.
T Consensus 133 ~qrv~laral-~~~p~llllDEP~ 155 (204)
T cd03250 133 KQRISLARAV-YSDADIYLLDDPL 155 (204)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCcc
Confidence 9999999999 9999999999663
No 260
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.3e-18 Score=160.70 Aligned_cols=158 Identities=14% Similarity=0.174 Sum_probs=107.8
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.+
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR------------MNDTIDGCRVTGKITLDGED 87 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hcccccCCCCceEEEECCEE
Confidence 45678888888778999999998 999999999999999999999999 766 489999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCc--cc--cccCH----hHHhhh----------hHHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQP--SL--LKVTK----QSLAQT----------FPEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~--~l--~~~~~----~~l~~~----------~~~~~~~L 267 (327)
+...+... ...++.+++++|.+.. ++.|+..+... .. ..-.. ..+... .......|
T Consensus 88 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 164 (267)
T PRK14235 88 IYDPRLDV---VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL 164 (267)
T ss_pred Ccccccch---HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence 75422111 0145678999997532 22222221100 00 00000 000100 01112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+.+++++ +.+|.++|+|+| .....+.++++++.
T Consensus 165 SgGq~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~ 210 (267)
T PRK14235 165 SGGQQQRLCIARAI-AVSPEVILMDEPCSALDPIATAKVEELIDELR 210 (267)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999965 45566666776664
No 261
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.73 E-value=5e-19 Score=173.17 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=101.5
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce----eecccc
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ----RVGEVS 213 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~----~v~~~s 213 (327)
.+..+|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|. ++...+
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~G------------l~~p~~G~I~idG~~~~~~i~~~~ 96 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNG------------LNPVSRGSVLVKDGDGSIDVANCD 96 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCcEEEECCEecccccccCC
Confidence 3445566667889999998 999999999999999999999999 99999999999996 343332
Q ss_pred ccCCCccee-eEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 214 TKSGRGKHT-TRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~t-t~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.... +.. .+.++|++|.+.. ++.|+..+... . ++.+......+..+ ..|||||+|
T Consensus 97 ~~~l--~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---~~LSgGq~Q 171 (382)
T TIGR03415 97 AATL--RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---GELSGGMQQ 171 (382)
T ss_pred HHHH--HHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---hhCCHHHHH
Confidence 2110 111 2579999997532 33344332110 0 01111111112222 239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+.+++++ +.+|+++++|+| .-...+..++.++.
T Consensus 172 RV~LARAL-a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~ 211 (382)
T TIGR03415 172 RVGLARAF-AMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 (382)
T ss_pred HHHHHHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 33344444444543
No 262
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.6e-18 Score=153.46 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=101.3
Q ss_pred ceeeccCcchh-hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
..++.+|++.. ++++++|.+ .|++++|+|+|||||||+|++|.+ ++.|++|.|.++|.++...+..
T Consensus 5 ~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat------------lL~P~~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 5 TDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT------------LLIPDSGKVTIDGVDTVRDPSF 72 (245)
T ss_pred eehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHH------------hccCCCceEEEeecccccChHH
Confidence 45667787765 899999998 999999999999999999999999 9999999999999998877654
Q ss_pred CCCcceeeEEEEEEEccCCCeE----EeCcccCCccccccCHh-------------HHhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYL----ADTPGFNQPSLLKVTKQ-------------SLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i----~Dtpg~~~~~l~~~~~~-------------~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.+++++.++-..+.|- .++..+.. .+..+... ++..+...-...+|.||+||+.+|
T Consensus 73 ------vrr~IGVl~~e~glY~RlT~rEnl~~Fa-~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA 145 (245)
T COG4555 73 ------VRRKIGVLFGERGLYARLTARENLKYFA-RLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA 145 (245)
T ss_pred ------HhhhcceecCCcChhhhhhHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH
Confidence 7888998884322221 11111110 01111111 122222222334899999999999
Q ss_pred ccccccCCceEEcccHH
Q 020346 279 NCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~~ 295 (327)
+++ +++|.++|.|+|.
T Consensus 146 RAl-vh~P~i~vlDEP~ 161 (245)
T COG4555 146 RAL-VHDPSILVLDEPT 161 (245)
T ss_pred HHH-hcCCCeEEEcCCC
Confidence 999 9999999999773
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.73 E-value=1.6e-18 Score=160.58 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=98.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.+++.
T Consensus 6 ~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~G------------l~~p~~G~i~~~~~------- 66 (251)
T PRK09544 6 SLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG------------LVAPDEGVIKRNGK------- 66 (251)
T ss_pred EEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCc-------
Confidence 3566777887778999999998 999999999999999999999999 88999999998751
Q ss_pred cCCCcceeeEEEEEEEccCCCeE------EeCcccCC----cc----ccccCHhHHhhhhHHHHHhcCcccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGGYL------ADTPGFNQ----PS----LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~~i------~Dtpg~~~----~~----l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
..++|+||++..+. .+...+.. .. ++.+...+..+. ....||+||+||+.|+++
T Consensus 67 ---------~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~LSgGq~qrv~lara 134 (251)
T PRK09544 67 ---------LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA---PMQKLSGGETQRVLLARA 134 (251)
T ss_pred ---------cCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC---ChhhCCHHHHHHHHHHHH
Confidence 24778888642210 01000000 00 001111111111 123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|.++++|+| ...+.+.+++.++..
T Consensus 135 l-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 168 (251)
T PRK09544 135 L-LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR 168 (251)
T ss_pred H-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 9 999999999965 355555566666543
No 264
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.2e-18 Score=171.58 Aligned_cols=159 Identities=13% Similarity=0.171 Sum_probs=118.4
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
..+.+..+|+.-++|+++++.+ +|++++|+|.||||||||+|.|+| .|+|++|+|+++|+++...+.
T Consensus 10 ~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsG------------v~~p~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 10 ELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSG------------VYPPDSGEILIDGKPVAFSSP 77 (500)
T ss_pred eeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhC------------cccCCCceEEECCEEccCCCH
Confidence 3577889999999999999998 999999999999999999999999 999999999999999986665
Q ss_pred cCCCcceeeEEEEEEEccC----CCeEEeCcccCCcccc---ccCHhH--------Hhh-----hhHHHHHhcCcccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQPSLL---KVTKQS--------LAQ-----TFPEIKEMLKANEPAK 274 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l~---~~~~~~--------l~~-----~~~~~~~~LSgGq~q~ 274 (327)
... ....|.+++|+. ++++.+|..+...... -++... +.. ........||.||+|.
T Consensus 78 ~~A----~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~ 153 (500)
T COG1129 78 RDA----LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQM 153 (500)
T ss_pred HHH----HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHH
Confidence 543 456788899874 3444444433222111 011111 110 1222345599999999
Q ss_pred ccccccccccCCceEEcccHH------HHHHHHHHHHHHHHhH
Q 020346 275 CSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~~ 311 (327)
+.+++++ ..++.++|+|+|. -.+.+++++++++.++
T Consensus 154 VeIArAl-~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G 195 (500)
T COG1129 154 VEIARAL-SFDARVLILDEPTAALTVKETERLFDLIRRLKAQG 195 (500)
T ss_pred HHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 9999999 5599999999874 5566777777776654
No 265
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.3e-18 Score=158.89 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=104.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|+...+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|+++
T Consensus 6 ~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 6 SAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNR------------MNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhh------------ccccccCCCcceEEEECCEEc
Confidence 4567788887778999999998 999999999999999999999999 665 5899999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cc--cc-c--CHhHHhhh----------hHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SL--LK-V--TKQSLAQT----------FPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l--~~-~--~~~~l~~~----------~~~~~~~LSg 269 (327)
...+... ...++.+++++|++..+ +.|+..+... .. .. . ....+.+. .......||+
T Consensus 74 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14251 74 YGSKMDL---VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSG 150 (251)
T ss_pred ccccchH---HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCH
Confidence 5321110 01356789999975321 2222111000 00 00 0 00000000 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+||+.+++++ +.+|+++|+|+| ...+...++++++
T Consensus 151 Gq~qr~~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14251 151 GQQQRICIARAL-AVRPKVVLLDEPTSALDPISSSEIEETLMEL 193 (251)
T ss_pred HHHHHHHHHHHH-hcCCCEEEecCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999 899999999955 4555556666665
No 266
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.72 E-value=1.7e-18 Score=170.39 Aligned_cols=132 Identities=24% Similarity=0.303 Sum_probs=99.3
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
++.++++++|.+ +|+.++||||||||||||.++|.| .++|++|+|.+||-++...+... .-+
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG------------~w~p~~G~VRLDga~l~qWd~e~-----lG~ 410 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG------------IWPPTSGSVRLDGADLRQWDREQ-----LGR 410 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHc------------ccccCCCcEEecchhhhcCCHHH-----hcc
Confidence 457899999998 999999999999999999999999 99999999999999998887654 778
Q ss_pred EEEEEEccC---CCeEEeCcccCCcccc--c-cCHhHHhhhhHHHH--------------HhcCcccccccccccccccc
Q 020346 225 HVSLLPLSG---GGYLADTPGFNQPSLL--K-VTKQSLAQTFPEIK--------------EMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 225 ~i~~v~q~~---~~~i~Dtpg~~~~~l~--~-~~~~~l~~~~~~~~--------------~~LSgGq~q~~~~~~~~h~~ 284 (327)
|++|+||+- .+++.++..-.....+ . ++...++...+-+. ..|||||+||+.+++|+ .+
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl-YG 489 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL-YG 489 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH-cC
Confidence 999999963 3344444332211110 0 11112222222221 23999999999999999 99
Q ss_pred CCceEEcccHH
Q 020346 285 EPGCVVKGDWE 295 (327)
Q Consensus 285 ep~~~v~~~~~ 295 (327)
+|.+.|+|||.
T Consensus 490 ~P~lvVLDEPN 500 (580)
T COG4618 490 DPFLVVLDEPN 500 (580)
T ss_pred CCcEEEecCCC
Confidence 99999999773
No 267
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.72 E-value=3.6e-18 Score=154.36 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=95.7
Q ss_pred ceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
..+.++|. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.++...+..
T Consensus 4 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~g~~~~~~~~~ 71 (218)
T cd03290 4 TNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG------------EMQTLEGKVHWSNKNESEPSFE 71 (218)
T ss_pred eeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCeEEECCccccccccc
Confidence 45666775 456899999998 999999999999999999999999 8899999999999887654321
Q ss_pred CCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCHhHHhhh---hH--------------HHHHhcCccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTKQSLAQT---FP--------------EIKEMLKANEPAKC 275 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~~~l~~~---~~--------------~~~~~LSgGq~q~~ 275 (327)
. .....++.++|++|.+.. .+.|+..+.... ........... .+ .....||+||+||+
T Consensus 72 ~-~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03290 72 A-TRSRNRYSVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRI 149 (218)
T ss_pred c-cchhhcceEEEEcCCCccccccHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHH
Confidence 0 000134578999997532 111221111100 00000000000 00 01235999999999
Q ss_pred cccccccccCCceEEcccH
Q 020346 276 SFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~ 294 (327)
.+++++ +.+|.++++|+|
T Consensus 150 ~laral-~~~p~illlDEP 167 (218)
T cd03290 150 CVARAL-YQNTNIVFLDDP 167 (218)
T ss_pred HHHHHH-hhCCCEEEEeCC
Confidence 999999 999999999966
No 268
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.5e-18 Score=159.00 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=103.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|.+. +++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G------------~~~p~~G~v~i~g~~~~~~~~- 68 (235)
T cd03299 3 VENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAG------------FIKPDSGKILLNGKDITNLPP- 68 (235)
T ss_pred eEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCEEcCcCCh-
Confidence 45566677654 799999998 999999999999999999999999 889999999999998765432
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhhh---------HHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQTF---------PEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~~---------~~~~~~LSgGq~q~~~~~ 278 (327)
..+.+++++|++.. .+.|+..+.... ...... ...... ......||+||+||+.++
T Consensus 69 ------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 141 (235)
T cd03299 69 ------EKRDISYVPQNYALFPHMTVYKNIAYGLKK-RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141 (235)
T ss_pred ------hHcCEEEEeecCccCCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHH
Confidence 23578999987422 222222211000 000000 001101 111124999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +..|.++++|+| ...+.+.+++.++..
T Consensus 142 ral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~ 177 (235)
T cd03299 142 RAL-VVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177 (235)
T ss_pred HHH-HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999954 455666666666543
No 269
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.72 E-value=1.8e-18 Score=174.74 Aligned_cols=156 Identities=8% Similarity=0.120 Sum_probs=106.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc--cccceeecceeecccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~v~~~s 213 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++| ++|+|.++|+++...+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G------------~~~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG------------VYPHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCeEEEECCEECCCCC
Confidence 456777887777999999998 999999999999999999999999 7776 7999999999876533
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc--c-ccCH-------hH------Hhhhh-HHHHHhcCcccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL--L-KVTK-------QS------LAQTF-PEIKEMLKANEP 272 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l--~-~~~~-------~~------l~~~~-~~~~~~LSgGq~ 272 (327)
... ..+..++|+||.+.. ++.|+..+..... . .... .+ +.... ......|||||+
T Consensus 72 ~~~----~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 147 (500)
T TIGR02633 72 IRD----TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQ 147 (500)
T ss_pred HHH----HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHH
Confidence 211 023568999997532 2223222211000 0 0000 00 10010 111345999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 148 qrv~iA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 189 (500)
T TIGR02633 148 QLVEIAKAL-NKQARLLILDEPSSSLTEKETEILLDIIRDLKA 189 (500)
T ss_pred HHHHHHHHH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999 899999999965 455666667776644
No 270
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.8e-18 Score=160.52 Aligned_cols=158 Identities=13% Similarity=0.232 Sum_probs=105.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ | ++|+|+++|.+
T Consensus 13 l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL------------MIQMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred EEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hccCCCCCCCceEEEECCEE
Confidence 45677888887778999999998 999999999999999999999999 665 3 69999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccCH----hHH---hhh---h-------HHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTK----QSL---AQT---F-------PEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~~----~~l---~~~---~-------~~~~~~LS 268 (327)
+...+.. ....++.++|+||++..+ +.|+..+.......... ... ... . ......||
T Consensus 81 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS 157 (259)
T PRK14274 81 ILKGKVD---LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLS 157 (259)
T ss_pred ccccccC---HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCC
Confidence 7532111 011456799999975322 11221111000000000 000 000 0 11122399
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+.+++++ +.+|.++++|+| .....+.++++++.
T Consensus 158 ~Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 202 (259)
T PRK14274 158 GGQQQRLCIARAL-ATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202 (259)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999965 34455556666664
No 271
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.2e-18 Score=165.76 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=106.2
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFED 206 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g 206 (327)
+.++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| +.+ |++|+|+|+|
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g------------~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ------------LNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccccCCCCCceEEEECC
Confidence 45778888885 346899999998 999999999999999999999999 554 6799999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHhH---------Hhh---------hhHHHHH
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQS---------LAQ---------TFPEIKE 265 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~~---------l~~---------~~~~~~~ 265 (327)
.++...+... ...++.++++||.+. +++.|+..+... .......+ +.. ...+-..
T Consensus 149 ~~i~~~~~~~---~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~ 224 (329)
T PRK14257 149 TNTRSKKISS---LELRTRIGMVFQKPTPFEMSIFDNVAYGPR-NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGN 224 (329)
T ss_pred EEccccccch---HhhhccEEEEecCCccCCCcHHHHHHhHHH-hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcc
Confidence 9886321100 014567999999752 233333332110 00000000 000 0011123
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
.|||||+||+.+++|+ +.+|.++|+|+| ...+.+.+++.++.
T Consensus 225 ~LSgGqkqRl~LARAl-~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~ 272 (329)
T PRK14257 225 ALSGGQQQRLCIARAI-ALEPEVLLMDEPTSALDPIATAKIEELILELK 272 (329)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999 999999999965 34444666666554
No 272
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.6e-18 Score=159.19 Aligned_cols=158 Identities=13% Similarity=0.218 Sum_probs=104.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| ++. |++|+|+++|.+
T Consensus 11 l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 78 (264)
T PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR------------LNDLIPGFRVEGKVTFHGKN 78 (264)
T ss_pred EEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hhcccCCCCCceEEEECCEE
Confidence 34567778887778999999998 999999999999999999999999 654 489999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cccccCHhHHh---hh----------hHHHHHhcCcc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLLKVTKQSLA---QT----------FPEIKEMLKAN 270 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~~~~~~~l~---~~----------~~~~~~~LSgG 270 (327)
+...+... ...++.+++++|.+..+ +.++..+... ........... .. .......||||
T Consensus 79 i~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 155 (264)
T PRK14243 79 LYAPDVDP---VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGG 155 (264)
T ss_pred ccccccCh---HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHH
Confidence 74321110 11456799999975321 1122111100 00000000000 00 01111239999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+.|++++ +.+|+++++|+| ...+.+.+++.++.
T Consensus 156 q~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 198 (264)
T PRK14243 156 QQQRLCIARAI-AVQPEVILMDEPCSALDPISTLRIEELMHELK 198 (264)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999 899999999965 45556666776664
No 273
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2e-18 Score=161.59 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=105.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|.+
T Consensus 25 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G------------l~~~~~~~~~~G~i~~~g~~ 92 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNR------------MVELVPSVKTTGKILYRDQN 92 (271)
T ss_pred EEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hccCCCCCCCceeEEECCEE
Confidence 45677888887778999999998 999999999999999999999999 665 699999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcccccc-CH----hHHhh-------------hhHHHHHhc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKV-TK----QSLAQ-------------TFPEIKEML 267 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~-~~----~~l~~-------------~~~~~~~~L 267 (327)
+...+.. .....+.++|+||++..+ +.++..+... .... .. ..+.. ........|
T Consensus 93 ~~~~~~~---~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 93 IFDKSYS---VEELRTNVGMVFQKPNPFPKSIYDNVTYGPK-IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred ccccccc---HHHHhhhEEEEecCCccccccHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 7532110 011456799999975432 2222211000 0000 00 00010 001112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+.+++++ +.+|+++++|+| .....+.+++.++.
T Consensus 169 SgGe~qrv~laraL-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 214 (271)
T PRK14238 169 SGGQQQRLCIARCL-AIEPDVILMDEPTSALDPISTLKVEELVQELK 214 (271)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999 899999999955 34455556666653
No 274
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2e-18 Score=162.88 Aligned_cols=158 Identities=13% Similarity=0.176 Sum_probs=105.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ |++|+|+++|.+
T Consensus 40 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G------------l~~~~p~~~~~G~I~~~g~~ 107 (286)
T PRK14275 40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINR------------MNDLIPSCHTTGALMFDGED 107 (286)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccccCCCCCCceEEEECCEE
Confidence 34567777887667899999998 999999999999999999999999 543 599999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--cccc-cC-HhHHhh-------------hhHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLLK-VT-KQSLAQ-------------TFPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~~-~~-~~~l~~-------------~~~~~~~~LS 268 (327)
+....... ...++.++|++|++..+ +.|+..+... .... .. ...+.. ........||
T Consensus 108 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 184 (286)
T PRK14275 108 IYGKFTDE---VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLS 184 (286)
T ss_pred hhhcccch---HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCC
Confidence 75421110 01456799999975321 2222211100 0000 00 000000 0011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||+||+.+++++ +.+|.++|+|+| ...+.+.++++++.
T Consensus 185 gGq~qrv~LAraL-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 185 GGQQQRLCVARTL-AVEPEILLLDEPTSALDPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 999999999955 45555666666653
No 275
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.1e-18 Score=158.00 Aligned_cols=157 Identities=15% Similarity=0.210 Sum_probs=104.8
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cc---cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EP---ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p---~~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +. .| ++|+|+++|.++
T Consensus 7 ~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 7 QVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR------------MNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc------------ccccCCCCCccceEEECCEEC
Confidence 4567788887778999999998 999999999999999999999999 53 46 599999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--cccc-ccCH-hH---Hhhh----------hHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSLL-KVTK-QS---LAQT----------FPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l~-~~~~-~~---l~~~----------~~~~~~~LSg 269 (327)
....... ...++.++++||.+..+ +.|+..+.. .... .... .. +.+. .......||+
T Consensus 75 ~~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14239 75 YSPRTDT---VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG 151 (252)
T ss_pred cCcccch---HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH
Confidence 5321110 11456799999975322 222211100 0000 0000 00 0000 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+++++++ +.+|.++|+|+| .....+.++++++.
T Consensus 152 G~~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14239 152 GQQQRVCIARVL-ATSPKIILLDEPTSALDPISAGKIEETLLGLK 195 (252)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999 899999999965 45555666676663
No 276
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5e-18 Score=160.14 Aligned_cols=157 Identities=13% Similarity=0.215 Sum_probs=105.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||||||||+++|+| +++ |++|+|+++|.++
T Consensus 41 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~~~~~~p~~G~I~i~G~~i 108 (285)
T PRK14254 41 EARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINR------------MNDLIDAARVEGELTFRGKNV 108 (285)
T ss_pred EEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCcccCCCCceEEEECCEEc
Confidence 4567777787777999999998 999999999999999999999999 665 6999999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--ccc-ccC--HhHHhhhh----------HHHHHhcCccc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLL-KVT--KQSLAQTF----------PEIKEMLKANE 271 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~-~~~--~~~l~~~~----------~~~~~~LSgGq 271 (327)
...+... ...++.++|++|++..+ +.|+..+... ... ... ...+...+ ..-...|||||
T Consensus 109 ~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 109 YDADVDP---VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred cccccch---HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 5432111 11456799999975321 1222111000 000 000 00111111 11123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+.+++++ +.+|.++|+|+| ...+.+.++++++.
T Consensus 186 ~qrv~LAraL-~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~ 227 (285)
T PRK14254 186 QQRLCIARAI-APDPEVILMDEPASALDPVATSKIEDLIEELA 227 (285)
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999 999999999955 45566666776664
No 277
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.7e-18 Score=158.27 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=105.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~v~ 210 (327)
.+...+.|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|+++|.++.
T Consensus 11 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 11 CKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNR------------MNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------ccccccCCCCceEEEECCEecc
Confidence 456677777778999999998 999999999999999999999999 7765 7999999999875
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--ccccCHhHHhhhh------H-------HHHHhcCcccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--LLKVTKQSLAQTF------P-------EIKEMLKANEP 272 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--l~~~~~~~l~~~~------~-------~~~~~LSgGq~ 272 (327)
..+... ...++.+++++|++.. ++.|+..+.... ............. + .....||+||+
T Consensus 79 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 79 GKGVDP---VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred ccccch---HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 422111 1145679999997532 222222111000 0000000111110 1 11124999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+.+++++ +.+|.++++|+| ...+.+.++++++.
T Consensus 156 qrv~laral-~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~ 196 (261)
T PRK14263 156 QRLCIARAI-ATEPEVLLLDEPCSALDPIATRRVEELMVELK 196 (261)
T ss_pred HHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999 899999999955 46666667777663
No 278
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2e-18 Score=159.24 Aligned_cols=160 Identities=9% Similarity=0.160 Sum_probs=104.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc--cccceeecceeeccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~v~~~ 212 (327)
.++.+.+.|++..+++++++.+ +|++++|+|+||+|||||+++|+|... +.+| ++|+|.++|.++...
T Consensus 5 ~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 5 DARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND---------LIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred EEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc---------ccCCCCCceEEEECCEecccc
Confidence 3566777777777899999998 999999999999999999999999210 2454 599999999987643
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCC--ccc--cc-c--CHhHHhhh----------hHHHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQ--PSL--LK-V--TKQSLAQT----------FPEIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~--~~l--~~-~--~~~~l~~~----------~~~~~~~LSgGq~ 272 (327)
+... ...++.++|+||.+.. ++.|+..+.. ... .. . ....+... .......|||||+
T Consensus 76 ~~~~---~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 76 GVQV---DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred cccH---HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHH
Confidence 2110 1145679999997532 1222221110 000 00 0 00011110 1111234999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+.+++++ +.+|+++|+|+| ...+.+.++++++.
T Consensus 153 qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14245 153 QRLCIARAM-AVSPSVLLMDEPASALDPISTAKVEELIHELK 193 (250)
T ss_pred HHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999 999999999965 45556666676663
No 279
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.9e-18 Score=153.02 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=113.3
Q ss_pred CCceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.++++..++ ++|+++++.+ +|++.+|+||||||||||.+.|+|.. -|++|+|+|.|+|+++..++
T Consensus 5 ~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p----------~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 5 EIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP----------KYEVTEGEILFDGEDILELS 74 (251)
T ss_pred EEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC----------CceEecceEEECCcccccCC
Confidence 356777888774 9999999998 89999999999999999999999977 79999999999999999998
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc-----cc------c--C-------HhHHhhhhHHH-----HHhcC
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-----LK------V--T-------KQSLAQTFPEI-----KEMLK 268 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l-----~~------~--~-------~~~l~~~~~~~-----~~~LS 268 (327)
.... .+..+.+-+|.| .+-||+....+ +. + . ..+.....+++ ..-+|
T Consensus 75 ~~ER----Ar~GifLafQ~P----~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFS 146 (251)
T COG0396 75 PDER----ARAGIFLAFQYP----VEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFS 146 (251)
T ss_pred HhHH----HhcCCEEeecCC----ccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcC
Confidence 8765 666777777764 13344332110 00 0 0 00001111112 12279
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|||++|..+.+.+ +-+|+.+|+|++ ...+..-+.++++++.
T Consensus 147 GGEkKR~EilQ~~-~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~ 193 (251)
T COG0396 147 GGEKKRNEILQLL-LLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193 (251)
T ss_pred cchHHHHHHHHHH-hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence 9999999999888 889999999855 4666666666666554
No 280
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.4e-18 Score=157.87 Aligned_cols=155 Identities=14% Similarity=0.194 Sum_probs=104.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~v~ 210 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+| ++|+|.++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 7 SKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNR------------MNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred EEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh------------ccCcccCCCCccEEEECCEecc
Confidence 566777787777999999998 999999999999999999999999 6654 8999999999875
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcccccc-CH-------hHHhhhh----------HHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKV-TK-------QSLAQTF----------PEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~-~~-------~~l~~~~----------~~~~~~LSg 269 (327)
..+... ...++.++++||++.. ++.++..+... .... .. ..+.+.+ ......||+
T Consensus 75 ~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDV---VELRKRVGMVFQKPNPFPMSIYDNVAYGPR-IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG 150 (251)
T ss_pred cccccH---HHHHhheEEEecCCCcCCCcHHHHHHhHHH-hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 432110 0135679999997532 22222221100 0000 00 0111111 111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| .....+.++++++.
T Consensus 151 G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~ 194 (251)
T PRK14270 151 GQQQRLCIARTI-AVKPDVILMDEPTSALDPISTLKIEDLMVELK 194 (251)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999 899999999965 34455556666654
No 281
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.72 E-value=2.9e-18 Score=155.47 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=100.3
Q ss_pred CceeeccCcc-------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc--
Q 020346 137 YEPLFCSVES-------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-- 206 (327)
Q Consensus 137 ~~~~~~s~~~-------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-- 206 (327)
++.+.++|+. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|++++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------~~~~~~G~i~~~~~g 71 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA------------NYLPDSGRILVRHEG 71 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEEEecCC
Confidence 4566677742 36899999998 999999999999999999999999 8999999999984
Q ss_pred e--eeccccccCCCcceeeEEEEEEEccCCCe----EEeCcccC--Ccccc--cc--CHhHHhhhh---H----HHHHhc
Q 020346 207 Q--RVGEVSTKSGRGKHTTRHVSLLPLSGGGY----LADTPGFN--QPSLL--KV--TKQSLAQTF---P----EIKEML 267 (327)
Q Consensus 207 ~--~v~~~s~~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~--~~~l~--~~--~~~~l~~~~---~----~~~~~L 267 (327)
. ++...+.... .....+.+++++|++..+ +.|+..+. ..... .. ...++...+ + .....|
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 72 AWVDLAQASPREV-LEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred CccchhhcCHHHH-HHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 2 3332221100 000134689999975321 11111110 00000 00 000111100 0 112349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+||+.+++++ +.+|+++++|+| .-.+.+.++++++..
T Consensus 151 S~G~~qrl~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (224)
T TIGR02324 151 SGGEQQRVNIARGF-IADYPILLLDEPTASLDAANRQVVVELIAEAKA 197 (224)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999999999 899999999965 345555566666643
No 282
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.9e-18 Score=158.00 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=104.4
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~v 209 (327)
.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|.++|.++
T Consensus 5 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 5 NIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNR------------MNDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred EEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHh------------hcccccCCCCceEEEECCEEc
Confidence 3566777787778999999998 999999999999999999999999 6665 699999999887
Q ss_pred cc-ccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccC-----HhH---Hhhh----------hHHHHHhc
Q 020346 210 GE-VSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVT-----KQS---LAQT----------FPEIKEML 267 (327)
Q Consensus 210 ~~-~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~-----~~~---l~~~----------~~~~~~~L 267 (327)
.. .+... .++.++|++|.+..+ +.|+..+... ..... ... ..+. .......|
T Consensus 73 ~~~~~~~~-----~~~~i~~~~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 146 (249)
T PRK14253 73 YGNIDVAD-----LRIKVGMVFQKPNPFPMSIYENVAYGLR-AQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGL 146 (249)
T ss_pred ccccchHH-----HHhheeEEecCCCcCcccHHHHHHhHHH-hcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccC
Confidence 42 11111 456799999975322 1222211100 00000 000 0000 00111249
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+||+.+++++ +.+|.++++|+| .......++++++.
T Consensus 147 S~G~~qrv~laral-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 192 (249)
T PRK14253 147 SGGQQQRLCIARTI-AMEPDVILMDEPTSALDPIATHKIEELMEELK 192 (249)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999965 45556666666664
No 283
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.71 E-value=6.1e-20 Score=153.45 Aligned_cols=127 Identities=19% Similarity=0.295 Sum_probs=87.2
Q ss_pred HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEE
Q 020346 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (327)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v 229 (327)
+++++.+ +|++++|+|+||+|||||+++|+| .++|++|+|.+++.++....... .+..++++
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g------------~~~~~~G~i~~~~~~~~~~~~~~-----~~~~i~~~ 64 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAG------------LLPPDSGSILINGKDISDIDIEE-----LRRRIGYV 64 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTT------------SSHESEEEEEETTEEGTTSHHHH-----HHHTEEEE
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecc------------ccccccccccccccccccccccc-----cccccccc
Confidence 4566666 899999999999999999999999 88999999999999998743322 56779999
Q ss_pred EccCC----CeEEeCcc--cCCccccccCHhHHhhhhH-HHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 230 PLSGG----GYLADTPG--FNQPSLLKVTKQSLAQTFP-EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 230 ~q~~~----~~i~Dtpg--~~~~~l~~~~~~~l~~~~~-~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
++... .++.++.. .....+..+.......... .-...||+||+||+.|++++ +.+|.++++|||.
T Consensus 65 ~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al-~~~~~llllDEPt 136 (137)
T PF00005_consen 65 PQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARAL-LKNPKLLLLDEPT 136 (137)
T ss_dssp ESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHH-HTTSSEEEEESTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHH-HcCCCEEEEeCCC
Confidence 99631 11222200 0000011111111111100 00145999999999999998 9999999999873
No 284
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=1.2e-18 Score=150.36 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=101.9
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
.+...++++|+.+ +|+.++|.||||||||||++.++. +..|++|+++|.|++++..+... .+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~------------Lisp~~G~l~f~Ge~vs~~~pea-----~R 76 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS------------LISPTSGTLLFEGEDVSTLKPEA-----YR 76 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh------------ccCCCCceEEEcCccccccChHH-----HH
Confidence 4567899999998 999999999999999999999999 99999999999999999887654 78
Q ss_pred EEEEEEEccC---CCeEEeCcccCCccccc----------cCHhHHhhhh-HHHHHhcCccccccccccccccccCCceE
Q 020346 224 RHVSLLPLSG---GGYLADTPGFNQPSLLK----------VTKQSLAQTF-PEIKEMLKANEPAKCSFNNCLHLGEPGCV 289 (327)
Q Consensus 224 ~~i~~v~q~~---~~~i~Dtpg~~~~~l~~----------~~~~~l~~~~-~~~~~~LSgGq~q~~~~~~~~h~~ep~~~ 289 (327)
..++|+.|.+ +.++.|+.-|....... +...++.+++ ..-...|||||+||.++.+-+ .--|+++
T Consensus 77 q~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L-q~~P~IL 155 (223)
T COG4619 77 QQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL-QFMPKIL 155 (223)
T ss_pred HHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh-hcCCceE
Confidence 8899998876 55788887665322111 1111111111 111244999999999999988 7789999
Q ss_pred EcccH
Q 020346 290 VKGDW 294 (327)
Q Consensus 290 v~~~~ 294 (327)
++|++
T Consensus 156 LLDE~ 160 (223)
T COG4619 156 LLDEI 160 (223)
T ss_pred EecCc
Confidence 99854
No 285
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.6e-18 Score=157.50 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=104.3
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|.++
T Consensus 5 ~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G------------l~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 5 EIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR------------MNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred EEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc------------cccCCCCCCcceEEEECCEEc
Confidence 3567777887778899999998 899999999999999999999999 666 3899999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccC---H-hHHhh-------------hhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVT---K-QSLAQ-------------TFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~---~-~~l~~-------------~~~~~~~~LSg 269 (327)
...+... ....+.+++++|.+.. .+.|+..+......... . ..+.. ........||+
T Consensus 73 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 149 (250)
T PRK14262 73 YDPQLDV---TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG 149 (250)
T ss_pred ccchhhH---HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH
Confidence 5421100 0135679999997532 22222211100000000 0 00000 01111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++++|+| .....+.+++.++.
T Consensus 150 Gq~qr~~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14262 150 GQQQRLCIARAL-AVEPEVILLDEPTSALDPIATQRIEKLLEELS 193 (250)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999 999999999965 34445556666553
No 286
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=7.9e-18 Score=155.44 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=103.7
Q ss_pred HHhhcCC-CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEc
Q 020346 153 LLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231 (327)
Q Consensus 153 l~~~l~g-~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q 231 (327)
+++.++| .++||-|+||+|||||||+|+| +.+|++|.|.+||.-..+.... -.-+--.++++|++|
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaG------------L~rPdeG~I~lngr~L~Ds~k~-i~lp~~~RriGYVFQ 83 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAG------------LTRPDEGRIELNGRVLVDAEKG-IFLPPEKRRIGYVFQ 83 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhc------------cCCccccEEEECCEEeecccCC-cccChhhheeeeEee
Confidence 3444566 7999999999999999999999 9999999999999876554322 111224678999999
Q ss_pred cC----CCeEEeCcccCCcc---------ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH----
Q 020346 232 SG----GGYLADTPGFNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW---- 294 (327)
Q Consensus 232 ~~----~~~i~Dtpg~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~---- 294 (327)
+- .+++.-+..+.... ...+..+.+...+|.- |||||+||+++.+++ +..|+++++|+|
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~---LSGGEkQRVAIGRAL-Lt~P~LLLmDEPLaSL 159 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT---LSGGEKQRVAIGRAL-LTAPELLLMDEPLASL 159 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCc---cCcchhhHHHHHHHH-hcCCCeeeecCchhhc
Confidence 74 33444444433221 2233455666777766 999999999999999 999999999966
Q ss_pred --HHHHHHHHHHHHHHHhH
Q 020346 295 --ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 295 --~r~~~~~~ll~e~~~~~ 311 (327)
.|-....-.++.+.+.-
T Consensus 160 D~~RK~EilpylERL~~e~ 178 (352)
T COG4148 160 DLPRKREILPYLERLRDEI 178 (352)
T ss_pred ccchhhHHHHHHHHHHHhc
Confidence 36666666666665443
No 287
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-18 Score=167.83 Aligned_cols=135 Identities=21% Similarity=0.349 Sum_probs=107.0
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
..|.++.|.|. .+++|.++++.+ .|+++++||+||+||||++++|.+ +|++++|.|.++|+++..+
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR------------FyD~~sG~I~id~qdir~v 330 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR------------FYDVNSGSITIDGQDIRDV 330 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH------------HhCCcCceEEEcchhHHHh
Confidence 45778888885 578999999997 899999999999999999999999 9999999999999999988
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCH----------h---------HHhhhhHHHHH--------
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK----------Q---------SLAQTFPEIKE-------- 265 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~----------~---------~l~~~~~~~~~-------- 265 (327)
..+. .++.++++|| ||+.|.+....++.. . ..-..+|+-..
T Consensus 331 tq~s-----lR~aIg~VPQ-------DtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 331 TQQS-----LRRAIGIVPQ-------DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred HHHH-----HHHHhCcCcc-------cceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 7665 7889999999 566555443222211 1 11122232211
Q ss_pred hcCccccccccccccccccCCceEEcccH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.|||||+||+++++.+ +.+|.+++.|+.
T Consensus 399 klSggekqrvaiar~i-lk~p~il~~dea 426 (497)
T COG5265 399 KLSGGEKQRVAIARTI-LKNPPILILDEA 426 (497)
T ss_pred eccCchHHHHHHHHHH-hcCCCEEEEehh
Confidence 2899999999999999 999999999854
No 288
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=6.2e-18 Score=145.30 Aligned_cols=119 Identities=21% Similarity=0.396 Sum_probs=95.6
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|.| +++|++|+|+++|.++.......
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g------------~~~~~~G~i~~~~~~~~~~~~~~ 70 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG------------LLKPTSGEILIDGKDIAKLPLEE 70 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCccEEEECCEEcccCCHHH
Confidence 45566676667899999997 899999999999999999999999 88999999999998776543221
Q ss_pred CCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH-
Q 020346 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE- 295 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~- 295 (327)
....+++++| ||+||+||+.+++++ +.+|.++++|+|.
T Consensus 71 -----~~~~i~~~~q-----------------------------------lS~G~~~r~~l~~~l-~~~~~i~ilDEp~~ 109 (157)
T cd00267 71 -----LRRRIGYVPQ-----------------------------------LSGGQRQRVALARAL-LLNPDLLLLDEPTS 109 (157)
T ss_pred -----HHhceEEEee-----------------------------------CCHHHHHHHHHHHHH-hcCCCEEEEeCCCc
Confidence 4456888876 999999999999998 8899999999653
Q ss_pred -----HHHHHHHHHHHHHH
Q 020346 296 -----RYQYYFQLLDEIRI 309 (327)
Q Consensus 296 -----r~~~~~~ll~e~~~ 309 (327)
....+.+++.++..
T Consensus 110 ~lD~~~~~~l~~~l~~~~~ 128 (157)
T cd00267 110 GLDPASRERLLELLRELAE 128 (157)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 44445555555543
No 289
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.4e-18 Score=158.78 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=105.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++| ++|+|.++|.+
T Consensus 8 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~G------------l~~~~~~~~~~G~i~~~g~~ 75 (259)
T PRK14260 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNR------------ISELEGPVKVEGVVDFFGQN 75 (259)
T ss_pred EEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hcCcccCCccceEEEECCEe
Confidence 44677888887778999999998 999999999999999999999999 6664 58999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCcc---ccccCH----hHHhh----------hhHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPS---LLKVTK----QSLAQ----------TFPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~---l~~~~~----~~l~~----------~~~~~~~~LS 268 (327)
+...+... +.....+++++|++..+ +.++..+.... ...... .+... ........||
T Consensus 76 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (259)
T PRK14260 76 IYDPRINI---NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLS 152 (259)
T ss_pred ccccccch---HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 75321110 11356799999975322 12221110000 000000 00000 0111123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+.+++++ +.+|+++++|+| ...+.+.+++.++.
T Consensus 153 ~G~~qrv~laral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (259)
T PRK14260 153 GGQQQRLCIARAL-AIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197 (259)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999 899999999965 35555666666653
No 290
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.71 E-value=3.5e-18 Score=156.09 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=90.5
Q ss_pred HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEE
Q 020346 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (327)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v 229 (327)
+++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.++...+. ..+++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~----------~~~~v 59 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISG------------LAQPTSGGVILEGKQITEPGP----------DRMVV 59 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCCCCh----------hheEE
Confidence 5677777 899999999999999999999999 889999999999998754321 13688
Q ss_pred EccCCC----eEEeCcccCCc-cccccCH-------h------HHhhhhHHHHHhcCccccccccccccccccCCceEEc
Q 020346 230 PLSGGG----YLADTPGFNQP-SLLKVTK-------Q------SLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (327)
Q Consensus 230 ~q~~~~----~i~Dtpg~~~~-~l~~~~~-------~------~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~ 291 (327)
+|.+.. ++.|+..+... ....... . .+..........|||||+||+.+++++ +.+|.++|+
T Consensus 60 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-~~~p~lllL 138 (230)
T TIGR01184 60 FQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARAL-SIRPKVLLL 138 (230)
T ss_pred ecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHH-HcCCCEEEE
Confidence 886422 22233211100 0000100 0 011111111234999999999999999 999999999
Q ss_pred ccH------HHHHHHHHHHHHHHH
Q 020346 292 GDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 292 ~~~------~r~~~~~~ll~e~~~ 309 (327)
|+| ...+...+++.++..
T Consensus 139 DEPt~gLD~~~~~~l~~~l~~~~~ 162 (230)
T TIGR01184 139 DEPFGALDALTRGNLQEELMQIWE 162 (230)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHH
Confidence 965 355555566666543
No 291
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=8e-18 Score=147.19 Aligned_cols=127 Identities=19% Similarity=0.288 Sum_probs=94.9
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
...+++.++|.+ +|++++|+|.||||||||.++|+| ..+||+|+|.+||.+...-.-.. ..+
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaG------------mi~PTsG~il~n~~~L~~~Dy~~-----R~k 87 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG------------MIEPTSGEILINDHPLHFGDYSF-----RSK 87 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhc------------ccCCCCceEEECCccccccchHh-----hhh
Confidence 445788899998 899999999999999999999999 99999999999999875432221 456
Q ss_pred EEEEEEccCCC---------eEEeCcccCCccccccC-HhH-------------HhhhhHHHHHhcCccccccccccccc
Q 020346 225 HVSLLPLSGGG---------YLADTPGFNQPSLLKVT-KQS-------------LAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 225 ~i~~v~q~~~~---------~i~Dtpg~~~~~l~~~~-~~~-------------l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
++.|++|+++. .+.|.|.-....+..-. ... .+..+|. .||.||+||+++++++
T Consensus 88 ~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~---~la~~QKQRVaLARAL 164 (267)
T COG4167 88 RIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH---MLAPGQKQRVALARAL 164 (267)
T ss_pred heeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchh---hcCchhHHHHHHHHHH
Confidence 78899999754 34566554443332111 011 1122233 3999999999999999
Q ss_pred cccCCceEEccc
Q 020346 282 HLGEPGCVVKGD 293 (327)
Q Consensus 282 h~~ep~~~v~~~ 293 (327)
+-+|.+++.||
T Consensus 165 -IL~P~iIIaDe 175 (267)
T COG4167 165 -ILRPKIIIADE 175 (267)
T ss_pred -hcCCcEEEehh
Confidence 88999999774
No 292
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=5.3e-18 Score=158.72 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=106.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|+++|.+
T Consensus 26 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laG------------l~~~~~~~~~~G~i~i~g~~ 93 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNR------------MNDLVDNCRIEGEIRLDGQN 93 (272)
T ss_pred EEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------cCCCccCCCCceEEEECCEE
Confidence 45677888887778999999998 999999999999999999999999 665 489999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--ccccc--cC---HhHHhhh---hH-------HHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSLLK--VT---KQSLAQT---FP-------EIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l~~--~~---~~~l~~~---~~-------~~~~~LS 268 (327)
+....... ...+..+++++|....+ +.|+..+.. ..... .. ..+.... .+ .....||
T Consensus 94 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 170 (272)
T PRK14236 94 IYDKKVDV---AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLS 170 (272)
T ss_pred CcccccCH---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCC
Confidence 75421100 11356799999975322 222221110 00000 00 0011110 00 1123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+++++++ +.+|.++++|+| .....+.+++.++.
T Consensus 171 ~Gq~qrv~laral-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 215 (272)
T PRK14236 171 GGQQQRLVIARAI-AIEPEVLLLDEPTSALDPISTLKIEELITELK 215 (272)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999965 45556666666664
No 293
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.2e-18 Score=157.15 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=105.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce------
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ------ 207 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~------ 207 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|.
T Consensus 11 i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG------------~~~~~~G~v~~~G~~~~~g~ 78 (257)
T PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNR------------LIEIYDSKIKVDGKVLYFGK 78 (257)
T ss_pred eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCcCceeEcCEEEECCc
Confidence 56788899999889999999998 999999999999999999999999 88999988777764
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCH-------hHHhhh----------hHHHHHh
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTK-------QSLAQT----------FPEIKEM 266 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~-------~~l~~~----------~~~~~~~ 266 (327)
++...+.. ..+..++|++|.+.. ++.|+..+.......... .+..+. .......
T Consensus 79 ~~~~~~~~-----~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (257)
T PRK14246 79 DIFQIDAI-----KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQ 153 (257)
T ss_pred ccccCCHH-----HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCccc
Confidence 33222211 145678999997532 222222211000000000 001010 0111234
Q ss_pred cCccccccccccccccccCCceEEcccHH------HHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
||+||+||+++++++ +.+|.++++|+|. ..+.+.+++.++.
T Consensus 154 LS~G~~qrl~laral-~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (257)
T PRK14246 154 LSGGQQQRLTIARAL-ALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200 (257)
T ss_pred CCHHHHHHHHHHHHH-HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999653 4455556666553
No 294
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.8e-18 Score=156.69 Aligned_cols=157 Identities=12% Similarity=0.190 Sum_probs=104.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +.. |++|+|+++|.++
T Consensus 5 ~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~v~~~g~~i 72 (250)
T PRK14266 5 EVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNR------------MNDLIPGFRHEGHIYLDGVDI 72 (250)
T ss_pred EEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hhccCCCCCCccEEEECCEEc
Confidence 4567778887777999999998 999999999999999999999999 432 4899999999987
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCccccccCH----hHHh---hh----------hHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTK----QSLA---QT----------FPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~~l~~~~~----~~l~---~~----------~~~~~~~LSg 269 (327)
...+... ...++.++|+||.+..+ +.|+..+.......... ..+. .. .......||+
T Consensus 73 ~~~~~~~---~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 149 (250)
T PRK14266 73 YDPAVDV---VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSG 149 (250)
T ss_pred ccccccH---HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCH
Confidence 5422100 01456799999975322 12221111000000000 0000 00 0111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.|++++ +..|.++++|+| .......+++.++.
T Consensus 150 Gq~qrv~laral-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 193 (250)
T PRK14266 150 GQQQRLCIARTI-AVSPEVILMDEPCSALDPISTTKIEDLIHKLK 193 (250)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999 899999999965 35555666666663
No 295
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.7e-18 Score=155.86 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=104.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--c---cccceeecceee
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQRV 209 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~v 209 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ | ++|+|+++|.++
T Consensus 7 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~~ 74 (252)
T PRK14255 7 TSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR------------MNDLIPGVTITGNVSLRGQNI 74 (252)
T ss_pred EEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccccCCCCCcccEEEEcCEEc
Confidence 3567778887778999999998 999999999999999999999999 543 4 599999999887
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--ccccc--cCHhHHhh-------------hhHHHHHhcCc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSLLK--VTKQSLAQ-------------TFPEIKEMLKA 269 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l~~--~~~~~l~~-------------~~~~~~~~LSg 269 (327)
...+... ...++.+++++|.+..+ +.++..+.. ..... ........ ........||+
T Consensus 75 ~~~~~~~---~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~ 151 (252)
T PRK14255 75 YAPNEDV---VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSG 151 (252)
T ss_pred ccccccH---HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCH
Confidence 5321110 01356799999975321 112211100 00000 00001000 01111234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+||+.+++++ +.+|.++|+|+| ...+.+.++++++.
T Consensus 152 Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14255 152 GQQQRVCIARVL-AVKPDVILLDEPTSALDPISSTQIENMLLELR 195 (252)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 45555666666664
No 296
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.6e-18 Score=175.63 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=97.9
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++...+.. ....+.+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G------------l~~p~~G~I~~~g~~~~~~~~~----~~~~~~i 340 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG------------VDKRAGGEIRLNGKDISPRSPL----DAVKKGM 340 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCcCCCCeEEECCEECCCCCHH----HHHHCCc
Confidence 4789999998 899999999999999999999999 8899999999999887532211 0123568
Q ss_pred EEEEccC---C----CeEEeCcccCCc----------cc-cc-cCH---hHHhhh-------hHHHHHhcCccccccccc
Q 020346 227 SLLPLSG---G----GYLADTPGFNQP----------SL-LK-VTK---QSLAQT-------FPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 227 ~~v~q~~---~----~~i~Dtpg~~~~----------~l-~~-~~~---~~l~~~-------~~~~~~~LSgGq~q~~~~ 277 (327)
+|+||.+ + .++.++..+... .. .. ... .++... .......|||||+||+.|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 9999862 1 123333221100 00 00 000 010110 111123499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 421 Aral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 457 (510)
T PRK09700 421 SKWL-CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457 (510)
T ss_pred HHHH-hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9998 899999999965 466666677777654
No 297
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.8e-18 Score=176.90 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=105.0
Q ss_pred CceeeccCcc-----------hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee
Q 020346 137 YEPLFCSVES-----------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (327)
Q Consensus 137 ~~~~~~s~~~-----------~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (327)
++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|++
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G------------l~~p~~G~I~~ 383 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR------------LVESQGGEIIF 383 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCcEEEE
Confidence 3456677741 35899999998 999999999999999999999999 88999999999
Q ss_pred cceeeccccccCCCcceeeEEEEEEEccCC--C----eEEeCcccC----C---c---------cccccCHh-HHhhhhH
Q 020346 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--G----YLADTPGFN----Q---P---------SLLKVTKQ-SLAQTFP 261 (327)
Q Consensus 205 ~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~--~----~i~Dtpg~~----~---~---------~l~~~~~~-~l~~~~~ 261 (327)
+|.++...+.... +..++.++|+||++. . ++.++..+. . . .++.+.+. ...+..+
T Consensus 384 ~g~~i~~~~~~~~--~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 461 (623)
T PRK10261 384 NGQRIDTLSPGKL--QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461 (623)
T ss_pred CCEECCcCCHHHH--HHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc
Confidence 9998765432110 113457999999742 1 122221110 0 0 00001110 1111122
Q ss_pred HHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 262 ~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
..|||||+||+.|++++ +.+|.++|+|+| .-.+.+.++++++..
T Consensus 462 ---~~LSgGqrQRv~iAraL-~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 462 ---HEFSGGQRQRICIARAL-ALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred ---ccCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 23999999999999999 899999999965 455556667766654
No 298
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=5.8e-18 Score=143.84 Aligned_cols=139 Identities=18% Similarity=0.290 Sum_probs=104.6
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeecccc
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVS 213 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~~s 213 (327)
+.++........+.++++++ +|+++.++||||||||||+..+.| .+.++ +|+++++++++..++
T Consensus 6 ~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G------------~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 6 KNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG------------ALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred eeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHh------------hcccCcceeeEEEECCeeccccc
Confidence 44555555666778899998 999999999999999999999999 44543 899999999999887
Q ss_pred ccCCCcceeeEEEEEEEccC----CCeEEeCcccCCc--------------cccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG----GGYLADTPGFNQP--------------SLLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~--------------~l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
. .++++++++|+. ...+-.+..|..+ .++.+...+..+.+|+. |||||+.|+
T Consensus 74 a-------~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~t---lSGGQrARv 143 (213)
T COG4136 74 A-------AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPAT---LSGGQRARV 143 (213)
T ss_pred h-------hhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhh---cCcchHHHH
Confidence 5 467899999974 2233333333221 12333344555666766 999999999
Q ss_pred cccccccccCCceEEcccHH-HHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDWE-RYQY 299 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~~-r~~~ 299 (327)
++.+++ +.+|+.+++|+|. |++.
T Consensus 144 aL~R~L-la~Pk~lLLDEPFS~LD~ 167 (213)
T COG4136 144 ALLRAL-LAQPKALLLDEPFSRLDV 167 (213)
T ss_pred HHHHHH-HhCcceeeeCCchhHHHH
Confidence 999999 9999999999874 4443
No 299
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.5e-18 Score=160.22 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=109.4
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-c----cccceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-P----ILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-p----~~G~i~~~g 206 (327)
++.+.++|.. ..++++++|.+ +|++++|||.||||||||.++|+| +.+ | .+|+|.|+|
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~------------llp~~~~~i~~G~i~f~g 71 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG------------LLPKPNARIVGGEILFDG 71 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHh------------ccCCCCCeEeeeEEEECC
Confidence 3455555543 36899999998 999999999999999999999999 665 3 689999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeE----------EeCcccCCc-------------cccccCH---hHHhhhh
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL----------ADTPGFNQP-------------SLLKVTK---QSLAQTF 260 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i----------~Dtpg~~~~-------------~l~~~~~---~~l~~~~ 260 (327)
+++...+.+. ..+-..+.++|+||++-..+ .++...... .++.+.. +...+.|
T Consensus 72 ~~l~~l~~~~-~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 72 KDLLSLSEKE-LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred cccccCCHHH-HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 9988887642 11224578999999863221 111110000 0111111 2234455
Q ss_pred HHHHHhcCccccccccccccccccCCceEEcccHH------HHHHHHHHHHHHHH
Q 020346 261 PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRI 309 (327)
Q Consensus 261 ~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~ 309 (327)
|.. |||||+||+.+|.++ ..+|+++|.|+|. -.+...++++++.+
T Consensus 151 Phe---lSGGMrQRV~IAmal-a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 151 PHE---LSGGMRQRVMIAMAL-ALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred Ccc---cCCcHHHHHHHHHHH-hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 555 999999999999998 9999999999663 45555677777755
No 300
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.3e-18 Score=156.09 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=106.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-----ccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++|+ +|+|.++|++
T Consensus 8 l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G------------l~~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR------------MNELESEVRVEGRVEFFNQN 75 (261)
T ss_pred EEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------ccCCCCCccccceEEECCEE
Confidence 45677888887777999999998 999999999999999999999999 77875 8999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCc--cc-cccCH-hHHhh---hh----------HHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQP--SL-LKVTK-QSLAQ---TF----------PEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~--~l-~~~~~-~~l~~---~~----------~~~~~~LS 268 (327)
+...+... ...++.+++++|+... ++.|+..+... .. ...+. ..... .+ ......||
T Consensus 76 i~~~~~~~---~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 152 (261)
T PRK14258 76 IYERRVNL---NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLS 152 (261)
T ss_pred hhccccch---HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 64321110 1145678999987532 12222111000 00 00000 00110 00 11113499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+||+.+++++ +.+|.++++|+| ...+.+.+++.++..
T Consensus 153 gGq~qrv~laral-~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~ 198 (261)
T PRK14258 153 GGQQQRLCIARAL-AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRL 198 (261)
T ss_pred HHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 899999999955 456666677766643
No 301
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1.9e-18 Score=174.96 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=104.2
Q ss_pred CceeeccCc---chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-ccccceeecceeecc
Q 020346 137 YEPLFCSVE---SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~---~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-p~~G~i~~~g~~v~~ 211 (327)
++.+.++|. +..+++++++.+ +|++++|+|+||||||||+|+|+| +++ |++|+|+++|+++..
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G------------l~~~~~~G~i~~~g~~~~~ 329 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG------------AYPGRWEGEIFIDGKPVKI 329 (506)
T ss_pred EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC------------CCCCCCCcEEEECCEECCC
Confidence 345666673 346899999998 999999999999999999999999 888 599999999988753
Q ss_pred ccccCCCcceeeEEEEEEEccCC-------CeEEeCcccCCc-cccc---cCH----h---HHhhh-------hHHHHHh
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG-------GYLADTPGFNQP-SLLK---VTK----Q---SLAQT-------FPEIKEM 266 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~-------~~i~Dtpg~~~~-~l~~---~~~----~---~l~~~-------~~~~~~~ 266 (327)
.+.. +.....++|++|.+. .++.|+..+... .... ... . ++.+. .......
T Consensus 330 ~~~~----~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 405 (506)
T PRK13549 330 RNPQ----QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIAR 405 (506)
T ss_pred CCHH----HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccccc
Confidence 3211 113446899998731 122232221100 0000 000 0 11111 1111235
Q ss_pred cCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|||||+||+.+++++ +.+|.++|+|+| ...+...+++.++.+.
T Consensus 406 LSgG~kqrv~lA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 454 (506)
T PRK13549 406 LSGGNQQKAVLAKCL-LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454 (506)
T ss_pred CCHHHHHHHHHHHHH-hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence 999999999999999 899999999965 4566666777776543
No 302
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6e-18 Score=158.65 Aligned_cols=158 Identities=14% Similarity=0.222 Sum_probs=105.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|.+
T Consensus 21 l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G------------l~~~~~~~~~~G~i~~~g~~ 88 (274)
T PRK14265 21 FEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR------------MNDLIPGAKVEGRLLYRDRN 88 (274)
T ss_pred EEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccccccCCCcCceEEECCEe
Confidence 34567788887777999999998 999999999999999999999999 654 369999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCCc--ccc-ccC--HhHHhh----------hhHHHHHhcCcc
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQP--SLL-KVT--KQSLAQ----------TFPEIKEMLKAN 270 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~~--~l~-~~~--~~~l~~----------~~~~~~~~LSgG 270 (327)
+....... ...++.++|+||.+..+ +.|+..+... ... ... ...... ........||||
T Consensus 89 l~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 165 (274)
T PRK14265 89 IYDSQINS---VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG 165 (274)
T ss_pred cccccchh---HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence 75321110 11456799999975321 2222211100 000 000 000000 011112339999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+||+.+++++ +.+|+++|+|+| ...+.+.+++.++.
T Consensus 166 q~qrv~LAraL-~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 208 (274)
T PRK14265 166 QQQRLCIARAI-AMKPDVLLMDEPCSALDPISTRQVEELCLELK 208 (274)
T ss_pred HHHHHHHHHHH-hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999 999999999955 45566666776664
No 303
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.6e-17 Score=153.37 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=102.9
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeecceeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~v~ 210 (327)
++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+ |++|+|+++|.++.
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNR------------MNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh------------hcccCCCCCcceEEEECCEehH
Confidence 456777777778999999998 999999999999999999999999 554 57999999998875
Q ss_pred cccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--ccc----cccC--HhHHhhhh----------HHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSL----LKVT--KQSLAQTF----------PEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l----~~~~--~~~l~~~~----------~~~~~~LSg 269 (327)
..+... ...++.++|+||++..+ +.++..+.. ... .... ..++.+.+ ......||+
T Consensus 76 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (251)
T PRK14244 76 SVDTNV---VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSG 152 (251)
T ss_pred hcccch---HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCH
Confidence 442110 01356789999975321 122211110 000 0000 00111100 011234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+||+.+++++ +.+|.++++|+| ...+.+.+++.++
T Consensus 153 Gq~qrv~laral-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (251)
T PRK14244 153 GQQQRLCIARAI-AVKPTMLLMDEPCSALDPVATNVIENLIQEL 195 (251)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999 899999999965 3444555666665
No 304
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=1.4e-17 Score=152.00 Aligned_cols=140 Identities=21% Similarity=0.203 Sum_probs=93.5
Q ss_pred HHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc----cccceeecceeeccccccCCCcceeeE
Q 020346 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p----~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
++++++.+ +|++++|+|+||+|||||+|+|+| +++| ++|+|+++|.++.... ...+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~~~~~G~i~~~g~~~~~~~-------~~~~ 62 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILG------------LLPPGLTQTSGEILLDGRPLLPLS-------IRGR 62 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCccCccccEEEECCEechhhh-------hhhh
Confidence 56788887 899999999999999999999999 8888 8999999999875431 1235
Q ss_pred EEEEEEccCCCeEEe--Cc----ccCCccccccC---H---hHHhh---------hhHHHHHhcCccccccccccccccc
Q 020346 225 HVSLLPLSGGGYLAD--TP----GFNQPSLLKVT---K---QSLAQ---------TFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 225 ~i~~v~q~~~~~i~D--tp----g~~~~~l~~~~---~---~~l~~---------~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
.+++++|++...+.. +. .+......... . .++.+ ........||+||+||+.+++++ +
T Consensus 63 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral-~ 141 (230)
T TIGR02770 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALAL-L 141 (230)
T ss_pred eeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHH-h
Confidence 799999975311111 10 00000000000 0 00000 01111234999999999999999 8
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+|.++++|+| ...+.+.+++.++..
T Consensus 142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173 (230)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 99999999965 355555666666644
No 305
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.69 E-value=2.9e-16 Score=147.59 Aligned_cols=145 Identities=26% Similarity=0.375 Sum_probs=107.0
Q ss_pred ccccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
+..++++|++++|.++..|..+. ..+.+++ .++|+++|+||+|+.+......|...+...+++++.+|..++.+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 90 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKG 90 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 44689999999999998775433 3456655 37899999999999877656677766665667788888887766
Q ss_pred HHHHHhhc----C--------------CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 150 LDSLLQRL----R--------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 150 l~~l~~~l----~--------------g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.|...+ + .-.++++|.||+|||||+|.|.+... ..
T Consensus 91 i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~-------------------------~~ 145 (276)
T TIGR03596 91 VKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV-------------------------AK 145 (276)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc-------------------------cc
Confidence 66653332 1 23699999999999999999998331 12
Q ss_pred ccccCCCcceeeEEEEEEEccCCCeEEeCcccCCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~ 249 (327)
++..+| +|+..+++......+++||||+..+.+.
T Consensus 146 ~~~~~g----~T~~~~~~~~~~~~~l~DtPG~~~~~~~ 179 (276)
T TIGR03596 146 VGNRPG----VTKGQQWIKLSDGLELLDTPGILWPKFE 179 (276)
T ss_pred cCCCCC----eecceEEEEeCCCEEEEECCCcccCCCC
Confidence 222333 7888888888777899999999766543
No 306
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=6.1e-18 Score=172.12 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=104.4
Q ss_pred CCceeeccCc-----------chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee
Q 020346 136 GYEPLFCSVE-----------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (327)
Q Consensus 136 ~~~~~~~s~~-----------~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~ 203 (327)
.++.+.++|. ...+++++++.+ +|++++|+|+||||||||+++|+| ++ |++|+|+
T Consensus 277 ~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G------------l~-~~~G~i~ 343 (529)
T PRK15134 277 DVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR------------LI-NSQGEIW 343 (529)
T ss_pred cccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC------------cC-CCCcEEE
Confidence 3556777774 246899999998 999999999999999999999999 76 5899999
Q ss_pred ecceeeccccccCCCcceeeEEEEEEEccCC------CeEEeCcccCCc-c---ccccC----HhHHhhhh---HH----
Q 020346 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG------GYLADTPGFNQP-S---LLKVT----KQSLAQTF---PE---- 262 (327)
Q Consensus 204 ~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~------~~i~Dtpg~~~~-~---l~~~~----~~~l~~~~---~~---- 262 (327)
++|.++...+.... ...++.++|+||++. .++.++..+... . ...-. ..++...+ ++
T Consensus 344 ~~g~~i~~~~~~~~--~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 421 (529)
T PRK15134 344 FDGQPLHNLNRRQL--LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR 421 (529)
T ss_pred ECCEEccccchhhH--HHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc
Confidence 99998765432110 012457899999742 122222211100 0 00000 00111100 01
Q ss_pred HHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 263 ~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
....|||||+||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 422 ~~~~LSgG~~qrv~la~al-~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 473 (529)
T PRK15134 422 YPAEFSGGQRQRIAIARAL-ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473 (529)
T ss_pred CCccCCHHHHHHHHHHHHH-hCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence 1124999999999999999 999999999965 455666677776654
No 307
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=6.1e-18 Score=151.14 Aligned_cols=150 Identities=16% Similarity=0.232 Sum_probs=109.1
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
..+++++++++.+ +|+.+.|+|.||||||||+|.|+| ...|++|.|.++|.++...+... ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG------------~l~~t~G~I~Idg~dVtk~~~~~-----RA 79 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG------------DLKPTSGQILIDGVDVTKKSVAK-----RA 79 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhC------------ccccCCceEEECceecccCCHHH-----Hh
Confidence 3578999999998 899999999999999999999999 78999999999999999988654 23
Q ss_pred EEEEEEEccC------CCeEEeCcccCCcc-----c-cccCHh--------------HHhhhhHHHHHhcCccccccccc
Q 020346 224 RHVSLLPLSG------GGYLADTPGFNQPS-----L-LKVTKQ--------------SLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 224 ~~i~~v~q~~------~~~i~Dtpg~~~~~-----l-~~~~~~--------------~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
..++-|+|++ .+++.++..+.... + ..+... .+......-...|||||+|.+.+
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 4456688876 12333322111100 0 000000 11112222234599999999999
Q ss_pred cccccccCCceEEcc------cHHHHHHHHHHHHHHHHhHH
Q 020346 278 NNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~~ 312 (327)
..++ ++.|+++++| ||..-+...++-+++.+..+
T Consensus 160 ~MAt-l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~k 199 (263)
T COG1101 160 LMAT-LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199 (263)
T ss_pred HHHh-cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcC
Confidence 9988 9999999998 68888888888888866554
No 308
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.69 E-value=8.4e-18 Score=153.09 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=96.8
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+..+.+...|+...+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++|.++....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------~~~p~~G~i~~~g~~~~~~~ 90 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------------IYPPDSGTVTVRGRVSSLLG 90 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEEchhhc
Confidence 34456677888888999999998 999999999999999999999999 88999999999998754221
Q ss_pred ccCCCcceeeEEEEEEEccCCCeEEeCcccCCc----ccccc--CHh------HHhhhhHHHHHhcCccccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP----SLLKV--TKQ------SLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~----~l~~~--~~~------~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
. ...+.+ ..++.|+..+... ..... ... .+..........||+||+||+.+++++
T Consensus 91 ~----------~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 157 (224)
T cd03220 91 L----------GGGFNP---ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred c----------cccCCC---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 0 111111 2222222211100 00000 000 011111111244999999999999999
Q ss_pred cccCCceEEcccHH------HHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDWE------RYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~~------r~~~~~~ll~e~~~ 309 (327)
+.+|.++|+|+|. -.....+++.++..
T Consensus 158 -~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~ 190 (224)
T cd03220 158 -ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK 190 (224)
T ss_pred -hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999653 33444455555543
No 309
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.69 E-value=8.7e-18 Score=169.80 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=102.3
Q ss_pred ceeeccC---cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-cccceeecceeeccc
Q 020346 138 EPLFCSV---ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEV 212 (327)
Q Consensus 138 ~~~~~s~---~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~v~~~ 212 (327)
+.+.++| ++..+++++++.+ +|++++|+|+||||||||+|+|+| +.+| ++|+|+++|.++...
T Consensus 261 ~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G------------~~~p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 261 RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG------------AYPGKFEGNVFINGKPVDIR 328 (500)
T ss_pred eCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhC------------CCCCCCCeEEEECCEECCCC
Confidence 3455556 2346899999998 999999999999999999999999 7785 899999999887532
Q ss_pred cccCCCcceeeEEEEEEEccCC---C----eEEeCcccCCc-ccc---ccC-------HhHHhhhh-------HHHHHhc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG---G----YLADTPGFNQP-SLL---KVT-------KQSLAQTF-------PEIKEML 267 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~---~----~i~Dtpg~~~~-~l~---~~~-------~~~l~~~~-------~~~~~~L 267 (327)
+.. ...++++++++|... . ++.++..+... ... .+. ..++.+.+ ......|
T Consensus 329 ~~~----~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (500)
T TIGR02633 329 NPA----QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRL 404 (500)
T ss_pred CHH----HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccC
Confidence 210 013457899998742 1 12222211100 000 000 00111111 1112359
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||||+||+.+++++ +.+|.++|+|+| ...+.+.++++++...
T Consensus 405 SgGqkqrv~la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 452 (500)
T TIGR02633 405 SGGNQQKAVLAKML-LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452 (500)
T ss_pred CHHHHHHHHHHHHH-hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC
Confidence 99999999999998 899999999965 4555566677776543
No 310
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.69 E-value=1.3e-17 Score=187.08 Aligned_cols=137 Identities=15% Similarity=0.220 Sum_probs=104.6
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.++++|.. +.+|+++++.+ +|++++|||+||||||||+++|+| +++ ++|+|++||.++..
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~r------------l~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLR------------LLS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhh------------hcC-CCcEEEECCEEccc
Confidence 568889999964 67999999998 999999999999999999999999 886 79999999999998
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhh------------hHH-----H---HHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQT------------FPE-----I---KEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~------------~~~-----~---~~~LS 268 (327)
++... .+++++++||++ .+++.++.-... ..+.+++... .|+ + -..||
T Consensus 1285 i~~~~-----lR~~is~IpQdp~LF~GTIR~NLdp~~----~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLS 1355 (1490)
T TIGR01271 1285 VTLQT-----WRKAFGVIPQKVFIFSGTFRKNLDPYE----QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS 1355 (1490)
T ss_pred CCHHH-----HHhceEEEeCCCccCccCHHHHhCccc----CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCC
Confidence 87655 788999999975 333433321111 0111111111 110 0 11389
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+|++++++++ +.+|+++|+|++
T Consensus 1356 gGQrQrL~LARAL-Lr~~~ILlLDEa 1380 (1490)
T TIGR01271 1356 NGHKQLMCLARSI-LSKAKILLLDEP 1380 (1490)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEEeCC
Confidence 9999999999999 999999999954
No 311
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.68 E-value=1.5e-17 Score=169.22 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=104.6
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g 206 (327)
++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++| ++|+|.++|
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G------------~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILR------------LLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCcCCccceEEEECC
Confidence 4567777753 46899999998 999999999999999999999999 7775 799999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEE------eCc--------ccCCcc--------ccccCHhHHhhhhHHHH
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA------DTP--------GFNQPS--------LLKVTKQSLAQTFPEIK 264 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~------Dtp--------g~~~~~--------l~~~~~~~l~~~~~~~~ 264 (327)
.++...+.... ....++.++|++|++...+. +.. ++.... ++.+...+.........
T Consensus 76 ~~i~~~~~~~~-~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 76 ESLLHASEQTL-RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred EecccCCHHHH-HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 98865432110 00012469999997521111 100 000000 00000000000011122
Q ss_pred HhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
..|||||+||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 155 ~~LSgGe~qrv~iAraL-~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 204 (529)
T PRK15134 155 HQLSGGERQRVMIAMAL-LTRPELLIADEPTTALDVSVQAQILQLLRELQQ 204 (529)
T ss_pred cccCHHHHHHHHHHHHH-hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHH
Confidence 34999999999999999 899999999955 466666677777654
No 312
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=1.7e-18 Score=148.76 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=116.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee--ccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV--GEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v--~~~ 212 (327)
..+.+.+.|+..+++-++++.- .|++++++||||+|||||++.|.= +.-|.+|+..+.+... +..
T Consensus 4 rv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl------------le~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 4 QLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL------------LEMPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH------------HhCCCCCeEEecccccccccC
Confidence 3456778899999999999885 899999999999999999999986 7789999999887643 222
Q ss_pred cccCCCcceeeEEEEEEEccCCCe--------EEeCcc----cCCc--------cccccCHhHHhhhhHHHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGY--------LADTPG----FNQP--------SLLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~--------i~Dtpg----~~~~--------~l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
+.. ..++..+++++|++|..+.+ +++.|. +... .+..+.....++.||-- |||||+
T Consensus 72 ~~~-k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plh---lsggqq 147 (242)
T COG4161 72 PSD-KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH---LSGGQQ 147 (242)
T ss_pred ccH-HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCcee---cccchh
Confidence 221 23445788999999976442 223332 1110 11222333445555554 999999
Q ss_pred ccccccccccccCCceEEcc------cHHHHHHHHHHHHHHHHhH
Q 020346 273 AKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e~~~~~ 311 (327)
||+++++++ +.+|.+++.| ||+--.....+++|+..-+
T Consensus 148 qrvaiaral-mmkpqvllfdeptaaldpeitaqvv~iikel~~tg 191 (242)
T COG4161 148 QRVAIARAL-MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG 191 (242)
T ss_pred hhHHHHHHH-hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC
Confidence 999999999 8899999988 5667777778888886544
No 313
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.68 E-value=5.6e-18 Score=156.53 Aligned_cols=142 Identities=19% Similarity=0.216 Sum_probs=93.5
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
+++++++.+ +|++++|+|+||||||||+++|+| +++ .+|+|.++|.++...+... ..+.++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G------------l~~-~~G~i~~~g~~i~~~~~~~-----~~~~i~ 72 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG------------LLP-GSGSIQFAGQPLEAWSAAE-----LARHRA 72 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCC-CCeEEEECCEecCcCCHHH-----HhhheE
Confidence 688999998 999999999999999999999999 765 4999999999876543221 334578
Q ss_pred EEEccCCC----eEEeCcccCCccccccC--H---hH------HhhhhHHHHHhcCcccccccccccccccc-------C
Q 020346 228 LLPLSGGG----YLADTPGFNQPSLLKVT--K---QS------LAQTFPEIKEMLKANEPAKCSFNNCLHLG-------E 285 (327)
Q Consensus 228 ~v~q~~~~----~i~Dtpg~~~~~l~~~~--~---~~------l~~~~~~~~~~LSgGq~q~~~~~~~~h~~-------e 285 (327)
|+||.+.. ++.++..+......... . .+ +..........||+||+||+.+++++ +. +
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al-~~~~~~~~p~ 151 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVV-LQVWPDINPA 151 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH-hccccccCCC
Confidence 99986422 22222221110000000 0 00 11111111234999999999999998 65 6
Q ss_pred CceEEcccH------HHHHHHHHHHHHHHH
Q 020346 286 PGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 286 p~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|.++|+|+| .....+.++++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 181 (248)
T PRK03695 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181 (248)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 799999955 455566677776653
No 314
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.3e-17 Score=158.81 Aligned_cols=159 Identities=16% Similarity=0.213 Sum_probs=106.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-----ccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|+|+||+|||||+++|+| +++ |++|+|.++|.+
T Consensus 46 l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G------------l~~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR------------MNDRIKAARIDGSVELDGQD 113 (305)
T ss_pred EEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cccccCCCCCceEEEECCEE
Confidence 34667888888778999999998 999999999999999999999999 654 689999999988
Q ss_pred eccccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc-----------ccccC-----HhHHhh---hh------
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS-----------LLKVT-----KQSLAQ---TF------ 260 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~-----------l~~~~-----~~~l~~---~~------ 260 (327)
+...... ....++.++|++|.+.. .+.++..+.... ..... ...+.. .+
T Consensus 114 i~~~~~~---~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 114 IYQDGVN---LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred ccccccc---HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 7542110 01134679999997532 222222111000 00000 000000 00
Q ss_pred ----HHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 261 ----PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 261 ----~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
......|||||+||+.+++++ +.+|.++|+|+| .......++++++..
T Consensus 191 ~~~~~~~~~~LSgGq~qrv~LAraL-~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~ 248 (305)
T PRK14264 191 NDRLDDNALGLSGGQQQRLCIARCL-AVDPEVILMDEPASALDPIATSKIEDLIEELAE 248 (305)
T ss_pred hHHhcCccccCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 011234999999999999999 999999999955 455566667766643
No 315
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.68 E-value=7.3e-16 Score=132.03 Aligned_cols=143 Identities=31% Similarity=0.501 Sum_probs=100.3
Q ss_pred ccccccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcch
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (327)
+.+...+++|.+++|+++..|.... ..+.+++ ...++|+++|+||+|+.+......+.......+++.+.+|..++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 81 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYV---LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHH---HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 4556778899999999997764332 2344443 34578999999999998654444443323345667888998887
Q ss_pred hhHHHHHhhc--------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 148 LGLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 148 ~~l~~l~~~l--------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
.+++.+...+ ....++++|.||+|||||+|.|.+... ..++...+
T Consensus 82 ~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~-------------------------~~~~~~~~-- 134 (156)
T cd01859 82 LGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHS-------------------------ASTSPSPG-- 134 (156)
T ss_pred ccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCc-------------------------cccCCCCC--
Confidence 7777665554 245789999999999999999998321 11222222
Q ss_pred ceeeEEEEEEEccCCCeEEeCccc
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
+|++..++..+...+++||||+
T Consensus 135 --~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 135 --YTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred --eeeeeEEEEcCCCEEEEECcCC
Confidence 5666777777667789999996
No 316
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.68 E-value=1e-17 Score=187.14 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=71.3
Q ss_pred hcCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec-cee
Q 020346 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQR 208 (327)
Q Consensus 134 ~~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~-g~~ 208 (327)
.+.++.+.++|.+ ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|+++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER------------LYDPTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHH------------hccCCCCeEEEeCCcc
Confidence 4667889999974 36899999998 999999999999999999999999 999999999994 677
Q ss_pred eccccccCCCcceeeEEEEEEEccC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~ 233 (327)
+..++... .++++++++|++
T Consensus 450 i~~~~~~~-----lr~~Ig~V~Q~~ 469 (1466)
T PTZ00265 450 LKDINLKW-----WRSKIGVVSQDP 469 (1466)
T ss_pred hhhCCHHH-----HHHhccEecccc
Confidence 76655332 577899999985
No 317
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.67 E-value=8.9e-18 Score=170.57 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=101.2
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cccccceeecc-------
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EPILGSKWFED------- 206 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p~~G~i~~~g------- 206 (327)
++.++++|++..+++++++.+ +|++++|+|+||||||||+++|+| +. +|++|+|.+++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~G------------l~~~~p~~G~i~~~~~~~~~~~ 70 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG------------MDQYEPTSGRIIYHVALCEKCG 70 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhh------------cccCCCCceEEEEecccccccc
Confidence 456777887778999999998 999999999999999999999999 65 79999999973
Q ss_pred ----------------eeecc--ccc---cCCCcceeeEEEEEEEcc-CCC----eEEeCcccCCccccccCHh----HH
Q 020346 207 ----------------QRVGE--VST---KSGRGKHTTRHVSLLPLS-GGG----YLADTPGFNQPSLLKVTKQ----SL 256 (327)
Q Consensus 207 ----------------~~v~~--~s~---~~~~g~~tt~~i~~v~q~-~~~----~i~Dtpg~~~~~l~~~~~~----~l 256 (327)
.++.. ... ....-...++.+++++|. ... ++.++..+.... ...... .+
T Consensus 71 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~ 149 (520)
T TIGR03269 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE-IGYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 11110 000 000000124568999995 221 112222110000 000000 00
Q ss_pred h---------hhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 257 A---------QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 257 ~---------~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
. .........|||||+||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 150 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 216 (520)
T TIGR03269 150 VDLIEMVQLSHRITHIARDLSGGEKQRVVLARQL-AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVK 216 (520)
T ss_pred HHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHH-hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 011111234999999999999999 999999999955 466666677777643
No 318
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=6e-18 Score=157.63 Aligned_cols=160 Identities=12% Similarity=0.191 Sum_probs=104.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+.++.+.++|.+..+++++++.+ +|++++|+|+||+|||||+++|+| +.+| ++|+|.++|.+
T Consensus 17 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR------------MHDLYPGNHYEGEIILHPDN 84 (265)
T ss_pred EEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------ccCCCCCCCcccEEEEcCcc
Confidence 44678888887778999999998 999999999999999999999999 6553 79999999987
Q ss_pred eccccccCCCcceeeEEEEEEEccCCCe---EEeCcccCC--cccc--ccCHh---HHhhh----------hHHHHHhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQ--PSLL--KVTKQ---SLAQT----------FPEIKEMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~~~---i~Dtpg~~~--~~l~--~~~~~---~l~~~----------~~~~~~~LS 268 (327)
+...+... .....++.+++++|.+..+ +.|+..+.. .... ....+ ...+. .......||
T Consensus 85 ~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 85 VNILSPEV-DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLS 163 (265)
T ss_pred cccccccc-CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCC
Confidence 64221100 0011456789999975322 122221110 0000 00000 11000 011123499
Q ss_pred ccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+||+.+++++ +.+|+++++|+| .-.+.+.++++++.
T Consensus 164 ~G~~qrv~laral-~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~ 208 (265)
T PRK14252 164 GGQQQRLCIARAL-ATDPEILLFDEPTSALDPIATASIEELISDLK 208 (265)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 9999999999999 899999999965 34555556666654
No 319
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.67 E-value=8e-16 Score=134.26 Aligned_cols=140 Identities=29% Similarity=0.440 Sum_probs=99.6
Q ss_pred ccccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
+..++++|++++|+++..|..+.. .+..+ ..++++++|+||+|+.++.....|...+...+++++.+|..++.+
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~~i~~~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 88 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNPLLEKI-----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKG 88 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCChhhHhH-----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCccc
Confidence 557899999999999987754322 22222 246899999999999876554456555555566788889888777
Q ss_pred HHHHHhhcC-----------------CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 150 LDSLLQRLR-----------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 150 l~~l~~~l~-----------------g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
++.+...+. +..++++|.||+|||||+|.|.+... ...
T Consensus 89 i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~-------------------------~~~ 143 (171)
T cd01856 89 VKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKV-------------------------AKV 143 (171)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCc-------------------------eee
Confidence 776655431 23799999999999999999998321 111
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccC
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~ 244 (327)
+...+ +|+...++..+...+++||||+.
T Consensus 144 ~~~~~----~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 144 GNKPG----VTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred cCCCC----EEeeeEEEEecCCEEEEECCCCC
Confidence 22222 77777777766678999999973
No 320
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.66 E-value=1.9e-15 Score=142.85 Aligned_cols=144 Identities=27% Similarity=0.421 Sum_probs=106.3
Q ss_pred ccccccccEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
+..++.+|.++.|.++..|..+ ...+..++ .++|+++|+||+||.+......|...++..+++++.+|..+..+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~g 93 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSENPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQG 93 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 3468899999999999877543 23455544 27899999999999877656677776765567778888876665
Q ss_pred HHHHHhhc------------------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 150 LDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 150 l~~l~~~l------------------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.+...+ .+-+++|+|.||||||||+|+|.+.. ...
T Consensus 94 i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-------------------------~~~ 148 (287)
T PRK09563 94 VKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-------------------------IAK 148 (287)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC-------------------------ccc
Confidence 55543321 12379999999999999999999933 122
Q ss_pred ccccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l 248 (327)
++..+| +|++.+++....+.+++||||+..+..
T Consensus 149 ~~~~~g----~T~~~~~~~~~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 149 TGNRPG----VTKAQQWIKLGKGLELLDTPGILWPKL 181 (287)
T ss_pred cCCCCC----eEEEEEEEEeCCcEEEEECCCcCCCCC
Confidence 233334 888899998877889999999987654
No 321
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.66 E-value=1.5e-17 Score=167.72 Aligned_cols=153 Identities=17% Similarity=0.117 Sum_probs=101.7
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-cccceeecceeecccccc
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~v~~~s~~ 215 (327)
+.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +.+| ++|+|+++|.++..-...
T Consensus 264 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G------------~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG------------DHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred eceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCcccCCeEEEecccCCCCCCH
Confidence 44566777667899999998 999999999999999999999999 6665 799999999865321100
Q ss_pred CCCcceeeEEEEEEEccCCCeE------EeCc--ccCC-------c-c---------ccccCHhH-HhhhhHHHHHhcCc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYL------ADTP--GFNQ-------P-S---------LLKVTKQS-LAQTFPEIKEMLKA 269 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i------~Dtp--g~~~-------~-~---------l~~~~~~~-l~~~~~~~~~~LSg 269 (327)
...++++++++|.+.... .+.. ++.. . . ++.+.... ..+. ....|||
T Consensus 332 ----~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~LSg 404 (490)
T PRK10938 332 ----WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA---PFHSLSW 404 (490)
T ss_pred ----HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC---chhhCCH
Confidence 113457899998642211 0100 0000 0 0 00011111 1111 1234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+||+.+++++ +.+|.++++|+| ...+.+.+++.++...
T Consensus 405 Gq~qrv~la~al-~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 405 GQQRLALIVRAL-VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 999999999999 999999999965 4556666777776543
No 322
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=1e-16 Score=148.04 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=93.4
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..++++++|.+ +|++++|||.||||||||-++|+| +++||+|+|+|+|+++..++... ...
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~------------L~~pt~G~i~f~g~~i~~~~~~~-----~~~- 87 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG------------LEEPTSGEILFEGKDITKLSKEE-----RRE- 87 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc------------CcCCCCceEEEcCcchhhcchhH-----HHH-
Confidence 36899999998 999999999999999999999999 99999999999999876554100 000
Q ss_pred EEEEEccCCCeEEeCcccCCccccccCH-hHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH------HHH
Q 020346 226 VSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------RYQ 298 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg~~~~~l~~~~~-~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~------r~~ 298 (327)
.....++.+.. .+....+|.. |||||+||+.+|+++ ..+|..+|.|++. -.+
T Consensus 88 -----------------~v~elL~~Vgl~~~~~~ryPhe---lSGGQrQRi~IARAL-al~P~liV~DEpvSaLDvSiqa 146 (268)
T COG4608 88 -----------------RVLELLEKVGLPEEFLYRYPHE---LSGGQRQRIGIARAL-ALNPKLIVADEPVSALDVSVQA 146 (268)
T ss_pred -----------------HHHHHHHHhCCCHHHhhcCCcc---cCchhhhhHHHHHHH-hhCCcEEEecCchhhcchhHHH
Confidence 00001122221 2345566666 999999999999999 7899999999663 345
Q ss_pred HHHHHHHHHHHhH
Q 020346 299 YYFQLLDEIRIRE 311 (327)
Q Consensus 299 ~~~~ll~e~~~~~ 311 (327)
....++.++.+..
T Consensus 147 qIlnLL~dlq~~~ 159 (268)
T COG4608 147 QILNLLKDLQEEL 159 (268)
T ss_pred HHHHHHHHHHHHh
Confidence 5566777765543
No 323
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.66 E-value=1.2e-17 Score=169.65 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=101.4
Q ss_pred CceeeccCcc-----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec-ceee
Q 020346 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRV 209 (327)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~-g~~v 209 (327)
++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|.++ |.+.
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G------------l~~p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG------------VLEPTSGEVNVRVGDEW 349 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEEecCCcc
Confidence 4556777742 45899999998 999999999999999999999999 889999999996 5432
Q ss_pred ccccccCC-CcceeeEEEEEEEccCCC----eEEeCcccC----Ccc----------ccccCHhH-----HhhhhHHHHH
Q 020346 210 GEVSTKSG-RGKHTTRHVSLLPLSGGG----YLADTPGFN----QPS----------LLKVTKQS-----LAQTFPEIKE 265 (327)
Q Consensus 210 ~~~s~~~~-~g~~tt~~i~~v~q~~~~----~i~Dtpg~~----~~~----------l~~~~~~~-----l~~~~~~~~~ 265 (327)
..++.... .....+++++|+||.+.. ++.++..+. ... ++.+.... ..... ..
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~ 426 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKY---PD 426 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCC---hh
Confidence 11111000 000124568999997532 222222110 000 00011100 11111 23
Q ss_pred hcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.|||||+||+.|++++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 427 ~LSgGq~qrv~laral-~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~ 475 (520)
T TIGR03269 427 ELSEGERHRVALAQVL-IKEPRIVILDEPTGTMDPITKVDVTHSILKARE 475 (520)
T ss_pred hCCHHHHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999 899999999965 455666666666643
No 324
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.66 E-value=1e-17 Score=169.46 Aligned_cols=145 Identities=12% Similarity=0.198 Sum_probs=97.6
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|.++|.++...+... ..++++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G------------~~~p~~G~I~~~g~~i~~~~~~~----~~~~~i 329 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG------------ALPRTSGYVTLDGHEVVTRSPQD----GLANGI 329 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCCCCHHH----HHHCCC
Confidence 3588999988 899999999999999999999999 88999999999998875432111 134568
Q ss_pred EEEEccCC-------CeEEeCcccCCc-cc----cccC----Hh---------HHh-hhhHHHHHhcCcccccccccccc
Q 020346 227 SLLPLSGG-------GYLADTPGFNQP-SL----LKVT----KQ---------SLA-QTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 227 ~~v~q~~~-------~~i~Dtpg~~~~-~l----~~~~----~~---------~l~-~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
+|+||.+. .++.++..+... .. .... .. .+. .........|||||+||+.|+++
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~a 409 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARG 409 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 99999741 122222211100 00 0000 00 110 01111223499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+ +.+|.++|+|+| ...+.+.++++++..
T Consensus 410 l-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 443 (501)
T PRK10762 410 L-MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA 443 (501)
T ss_pred H-hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH
Confidence 9 899999999965 455666667777654
No 325
>PLN03211 ABC transporter G-25; Provisional
Probab=99.66 E-value=4.9e-17 Score=169.47 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=102.6
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc--ccceeecceeecccccc
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI--LGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~--~G~i~~~g~~v~~~s~~ 215 (327)
.+..+|+++.+++++++.+ +|+.++|+||||||||||+|+|+| ..+|+ +|+|.+||.++.. .
T Consensus 73 ~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG------------~~~~~~~sG~I~inG~~~~~---~ 137 (659)
T PLN03211 73 DETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG------------RIQGNNFTGTILANNRKPTK---Q 137 (659)
T ss_pred cccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC------------CCCCCceeEEEEECCEECch---h
Confidence 3455677778999999998 999999999999999999999999 66775 9999999987642 1
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCcc-c-cccCHhH----HhhhhH-----H---------HHHhcCccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS-L-LKVTKQS----LAQTFP-----E---------IKEMLKANE 271 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-l-~~~~~~~----l~~~~~-----~---------~~~~LSgGq 271 (327)
..+.+++++|++. .++.|+..+.... + .....++ ..+... + ....|||||
T Consensus 138 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGe 211 (659)
T PLN03211 138 ------ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211 (659)
T ss_pred ------hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhh
Confidence 3346899999752 2333433321100 0 0111111 111111 0 112499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+||+.++.++ +.+|.++++|+| .......++++++.+.
T Consensus 212 rqRv~ia~aL-~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~ 255 (659)
T PLN03211 212 RKRVSIAHEM-LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255 (659)
T ss_pred hhHHHHHHHH-HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 9999999999 999999999965 3445555666666543
No 326
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=9.4e-17 Score=148.49 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=84.3
Q ss_pred hHHHHHhhc------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 149 GLDSLLQRL------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 149 ~l~~l~~~l------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
.++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G------------~~~p~~G~i~~~g~--------------- 61 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAG------------VLKPDEGDIEIELD--------------- 61 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCCCeEEECCc---------------
Confidence 445555554 689999999999999999999999 88999999998874
Q ss_pred eEEEEEEEccCC----CeEEeCcccCC-----------ccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc
Q 020346 223 TRHVSLLPLSGG----GYLADTPGFNQ-----------PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG 287 (327)
Q Consensus 223 t~~i~~v~q~~~----~~i~Dtpg~~~-----------~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~ 287 (327)
.+++++|... .++.|...+.. ..++.+......+. ....|||||+||+++++++ +.+|+
T Consensus 62 --~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---~~~~LSgGe~qrv~iaraL-~~~p~ 135 (246)
T cd03237 62 --TVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDR---EVPELSGGELQRVAIAACL-SKDAD 135 (246)
T ss_pred --eEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhC---ChhhCCHHHHHHHHHHHHH-hcCCC
Confidence 3455555421 12222211000 00111111111111 2234999999999999999 99999
Q ss_pred eEEcccH------HHHHHHHHHHHHHHH
Q 020346 288 CVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 288 ~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++|+| .....+.++++++..
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~ 163 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAE 163 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999965 344555566666643
No 327
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.65 E-value=3.1e-17 Score=164.57 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=108.2
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc----ccceeecce
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI----LGSKWFEDQ 207 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~----~G~i~~~g~ 207 (327)
++++.++|.. ..+++++||.+ +|++++|||.|||||||+.++|+| +.++. +|+|.|+|.
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~g------------ll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG------------LLPEGGRITSGEVILDGR 75 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhc------------cCCCCCcccceEEEECCc
Confidence 3444444432 25899999998 999999999999999999999999 55555 899999999
Q ss_pred eeccccccCCCcceeeEEEEEEEccCCCeEEeCcccC------------Cc------------cccccCHhHHh--hhhH
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN------------QP------------SLLKVTKQSLA--QTFP 261 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~------------~~------------~l~~~~~~~l~--~~~~ 261 (327)
++...+.... .+-..+.++++||++-..+ +|.+. .. .++.+...+.. ..+|
T Consensus 76 dl~~l~~~~~-r~~rg~~Ia~i~Q~p~~sl--nP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP 152 (539)
T COG1123 76 DLLGLSEREM-RKLRGKRIAMIFQDPMTSL--NPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP 152 (539)
T ss_pred chhcCCHHHH-HHhccccEEEEecCchhhc--CchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC
Confidence 8877765421 2224577999999852211 11110 00 01111111111 2356
Q ss_pred HHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 262 ~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
.. |||||+||+.+|.++ ..+|.++|.|+| ......+++++++...
T Consensus 153 he---LSGG~rQRv~iAmAL-a~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e 203 (539)
T COG1123 153 HQ---LSGGMRQRVMIAMAL-ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE 203 (539)
T ss_pred cc---cCchHHHHHHHHHHH-hCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH
Confidence 55 999999999999998 999999999965 4666677777777644
No 328
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.8e-17 Score=169.47 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=104.1
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.++|..+.
T Consensus 14 ~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~G------------ll~p~~G~i~~~g~~~~ 81 (623)
T PRK10261 14 AVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMR------------LLEQAGGLVQCDKMLLR 81 (623)
T ss_pred EEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCCeEEEECCEEec
Confidence 45667777752 36899999998 999999999999999999999999 89999999999987552
Q ss_pred c-------ccccCCCc-cee-eEEEEEEEccCC------CeEEeCcccCCc---c-------------ccccCHh---HH
Q 020346 211 E-------VSTKSGRG-KHT-TRHVSLLPLSGG------GYLADTPGFNQP---S-------------LLKVTKQ---SL 256 (327)
Q Consensus 211 ~-------~s~~~~~g-~~t-t~~i~~v~q~~~------~~i~Dtpg~~~~---~-------------l~~~~~~---~l 256 (327)
. +....... +.. .+.++|++|++. .++.++..+... . ++.+.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 161 (623)
T PRK10261 82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTI 161 (623)
T ss_pred cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhH
Confidence 1 10000000 001 246899999741 122222211100 0 0001110 01
Q ss_pred hhhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 257 AQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 257 ~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+.. ...|||||+||+.|++++ +.+|.++|+|+| ...+.+.++++++..
T Consensus 162 ~~~~---~~~LSgGq~QRv~iA~AL-~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~ 216 (623)
T PRK10261 162 LSRY---PHQLSGGMRQRVMIAMAL-SCRPAVLIADEPTTALDVTIQAQILQLIKVLQK 216 (623)
T ss_pred HhCC---CccCCHHHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHH
Confidence 1111 223999999999999999 899999999954 466667777777754
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=2.6e-17 Score=153.04 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=95.5
Q ss_pred eeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee-----------ec
Q 020346 139 PLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FE 205 (327)
Q Consensus 139 ~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~ 205 (327)
.+.++|+.+ .+++++++ + +|++++|+|+||||||||+|+|+| +++|++|+|+ ++
T Consensus 5 ~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~G------------l~~p~~G~I~~~~~~~~~~~~~~ 71 (255)
T cd03236 5 EPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAG------------KLKPNLGKFDDPPDWDEILDEFR 71 (255)
T ss_pred CcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCCceEeeccccchhhhhcc
Confidence 355677654 58999984 6 899999999999999999999999 9999999996 77
Q ss_pred ceeeccccccCCCcceeeEEEEEEEccCCC---eEEeCccc--CCccccc-----cCHhHHhhhhHHHHHhcCccccccc
Q 020346 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGF--NQPSLLK-----VTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 206 g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~--~~~~l~~-----~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
|.++........+ ....+++++|.... .+.++... ....... ++...+..........||+||+||+
T Consensus 72 g~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 148 (255)
T cd03236 72 GSELQNYFTKLLE---GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV 148 (255)
T ss_pred CchhhhhhHHhhh---cccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 7776543211100 11235666654211 11111110 0000000 0000011111112234999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+++++ +.+|.++++|+| .-...+..+++++..
T Consensus 149 ~laral-~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~ 187 (255)
T cd03236 149 AIAAAL-ARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187 (255)
T ss_pred HHHHHH-HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999 899999999965 344555667776654
No 330
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=1e-16 Score=145.80 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=92.2
Q ss_pred CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
+....+|+|++|.+ +|+.++|||+||||||||+++|+| .++||+|+|.++|.-..-+..
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG------------i~~Pt~G~v~v~G~v~~li~l-------- 96 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG------------IYKPTSGKVKVTGKVAPLIEL-------- 96 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC------------ccCCCCceEEEcceEehhhhc--------
Confidence 34567899999998 999999999999999999999999 999999999998865433321
Q ss_pred eEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHH-------------HHhcCccccccccccccccccCCceE
Q 020346 223 TRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEI-------------KEMLKANEPAKCSFNNCLHLGEPGCV 289 (327)
Q Consensus 223 t~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~-------------~~~LSgGq~q~~~~~~~~h~~ep~~~ 289 (327)
..++-|+ .+-.+|.-+....+ .+...++.+.++++ .+.+|.||+.|++|+-++| -+|+|+
T Consensus 97 --g~Gf~pe---lTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~-~~pdIL 169 (249)
T COG1134 97 --GAGFDPE---LTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH-VEPDIL 169 (249)
T ss_pred --ccCCCcc---cchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh-cCCCEE
Confidence 2233232 22223333322211 22333333333333 2348999999999998885 599999
Q ss_pred Eccc------HHHHHHHHHHHHHH
Q 020346 290 VKGD------WERYQYYFQLLDEI 307 (327)
Q Consensus 290 v~~~------~~r~~~~~~ll~e~ 307 (327)
|.|+ ..-.+-..+.+.|+
T Consensus 170 llDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 170 LLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred EEehhhhcCCHHHHHHHHHHHHHH
Confidence 9874 33334444445555
No 331
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.1e-17 Score=165.43 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=53.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
++.++++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+++
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G------------l~~p~~G~i~~~~ 62 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGG------------DLEPSAGNVSLDP 62 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEecC
Confidence 467788888778999999998 999999999999999999999999 8899999999875
No 332
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.7e-17 Score=167.91 Aligned_cols=146 Identities=11% Similarity=0.143 Sum_probs=97.3
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|+++...+... ...+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G------------~~~p~~G~i~~~g~~~~~~~~~~----~~~~~i 330 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYG------------ATRRTAGQVYLDGKPIDIRSPRD----AIRAGI 330 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcC------------CCcCCCceEEECCEECCCCCHHH----HHhCCC
Confidence 4689999988 999999999999999999999999 88999999999998775322111 134568
Q ss_pred EEEEccCC-------CeEEeCcccCCc-c-------ccc-cC---HhHHhhhh-------HHHHHhcCcccccccccccc
Q 020346 227 SLLPLSGG-------GYLADTPGFNQP-S-------LLK-VT---KQSLAQTF-------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 227 ~~v~q~~~-------~~i~Dtpg~~~~-~-------l~~-~~---~~~l~~~~-------~~~~~~LSgGq~q~~~~~~~ 280 (327)
+|+||.+. .++.++..+... . ... .. ..++...+ ......|||||+||+.++++
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~a 410 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRW 410 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHH
Confidence 99998742 122222211100 0 000 00 00111111 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+ +.+|.++|+|+| ...+.+.++++++.+.
T Consensus 411 l-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 445 (501)
T PRK11288 411 L-SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445 (501)
T ss_pred H-ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC
Confidence 8 899999999965 4555566666666543
No 333
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.64 E-value=5.9e-17 Score=147.32 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC--
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-- 235 (327)
+|++++|+|+||||||||+++|+| +++|++|+|+++|.++.. ..++++|+||.+..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G------------~~~~~~G~i~~~g~~~~~----------~~~~i~~v~q~~~~~~ 62 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILG------------LIPPAKGTVKVAGASPGK----------GWRHIGYVPQRHEFAW 62 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCccchH----------hhCcEEEecccccccC
Confidence 799999999999999999999999 889999999999987531 23568999987532
Q ss_pred ----eEEeCcccCCc----cc--cc-cCHhHHhh---------hhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 236 ----YLADTPGFNQP----SL--LK-VTKQSLAQ---------TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 236 ----~i~Dtpg~~~~----~l--~~-~~~~~l~~---------~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
++.|+..+... .. .. .....+.. ........||+||+||+.+++++ +.+|.++++|+|
T Consensus 63 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral-~~~p~llilDEP~ 141 (223)
T TIGR03771 63 DFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL-ATRPSVLLLDEPF 141 (223)
T ss_pred CCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH-hcCCCEEEEeCCc
Confidence 12222111000 00 00 00000111 01111234999999999999999 999999999965
Q ss_pred -----HHHHHHHHHHHHHHH
Q 020346 295 -----ERYQYYFQLLDEIRI 309 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~~ 309 (327)
...+.+.+++.++..
T Consensus 142 ~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 142 TGLDMPTQELLTELFIELAG 161 (223)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 355556666666643
No 334
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.64 E-value=5.7e-17 Score=152.87 Aligned_cols=127 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.+. ...+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|
T Consensus 40 l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G------------l~~p~~G~I~i~g------- 98 (282)
T cd03291 40 LFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG------------ELEPSEGKIKHSG------- 98 (282)
T ss_pred EEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECC-------
Confidence 344555553 456899999998 999999999999999999999999 8899999999876
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--------ccccCHhHHhhhhHHH--------HHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--------LLKVTKQSLAQTFPEI--------KEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--------l~~~~~~~l~~~~~~~--------~~~LSgGq~q~ 274 (327)
.++|++|.+.. ++.|+..+.... +...........++.. ...||+||+||
T Consensus 99 -----------~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 99 -----------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred -----------EEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 25667765321 222332221100 0000111111111110 13599999999
Q ss_pred ccccccccccCCceEEcccH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~ 294 (327)
+.|++++ +.+|.++++|+|
T Consensus 168 v~lAraL-~~~p~iLiLDEP 186 (282)
T cd03291 168 ISLARAV-YKDADLYLLDSP 186 (282)
T ss_pred HHHHHHH-hcCCCEEEEECC
Confidence 9999999 899999999966
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.3e-16 Score=161.07 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=96.5
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
+.+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|+++|.++...+... ..++.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~i~~~~~~~----~~~~~ 324 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG------------IREKSAGTITLHGKKINNHNANE----AINHG 324 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcC------------CCcCCccEEEECCEECCCCCHHH----HHHCC
Confidence 35789999998 999999999999999999999999 88999999999998875433211 12455
Q ss_pred EEEEEccCC-------CeE-----EeCcccCCccccccCH----h---------HHh-hhhHHHHHhcCccccccccccc
Q 020346 226 VSLLPLSGG-------GYL-----ADTPGFNQPSLLKVTK----Q---------SLA-QTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 226 i~~v~q~~~-------~~i-----~Dtpg~~~~~l~~~~~----~---------~l~-~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
++|+||... ..+ .+.............. . .+. .........|||||+||+.+++
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 888888632 111 1100000000000000 0 010 0111122349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++ +.+|.++|+||| ...+...++++++...
T Consensus 405 al-~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~ 440 (491)
T PRK10982 405 WL-LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK 440 (491)
T ss_pred HH-hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC
Confidence 99 999999999966 3445555666666543
No 336
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.2e-17 Score=165.38 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=94.8
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.+++.
T Consensus 322 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G------------~~~p~~G~i~~~~~-------- 381 (530)
T PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG------------ELEPDSGTVKWSEN-------- 381 (530)
T ss_pred EEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCc--------
Confidence 445677787777999999998 899999999999999999999999 88999999998752
Q ss_pred CCCcceeeEEEEEEEccCC------CeEEeCcccCC-ccccccCHhHHhhhh-------HHHHHhcCccccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG------GYLADTPGFNQ-PSLLKVTKQSLAQTF-------PEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~------~~i~Dtpg~~~-~~l~~~~~~~l~~~~-------~~~~~~LSgGq~q~~~~~~~~ 281 (327)
..++|++|... .++.+...+.. .....-....+...+ ......|||||+||+.|++++
T Consensus 382 --------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 382 --------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred --------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHH
Confidence 35788888642 11222211100 000000000111110 111234999999999999998
Q ss_pred cccCCceEEcccHH------HHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDWE------RYQYYFQLLDE 306 (327)
Q Consensus 282 h~~ep~~~v~~~~~------r~~~~~~ll~e 306 (327)
+.+|.++|+|+|. ..+.+.+++.+
T Consensus 454 -~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 483 (530)
T PRK15064 454 -MQKPNVLVMDEPTNHMDMESIESLNMALEK 483 (530)
T ss_pred -hcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 8999999999663 44444444444
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.63 E-value=7e-17 Score=165.45 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=97.6
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|+ +..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+++.
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G------------~~~p~~G~i~~~~~----- 69 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG------------VDKEFEGEARPAPG----- 69 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEecCC-----
Confidence 34567888887 678999999998 999999999999999999999999 88999999988531
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------c------ccC-----------------------
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------L------KVT----------------------- 252 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------~------~~~----------------------- 252 (327)
..++|++|.+.. ++.|+..+....+ . ...
T Consensus 70 -----------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 70 -----------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred -----------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 248899997522 2233322110000 0 000
Q ss_pred ---HhHHhhh--------hHHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHH
Q 020346 253 ---KQSLAQT--------FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDE 306 (327)
Q Consensus 253 ---~~~l~~~--------~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e 306 (327)
...+... .......|||||+||+.|++++ +.+|+++|+|+| +..+.+.+++++
T Consensus 139 ~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al-~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLL-LEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred cchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHH-hCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence 0000000 0111234999999999999999 999999999965 344444455554
No 338
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.63 E-value=4.9e-17 Score=184.08 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=107.3
Q ss_pred CCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|++ ..+++++++.+ +|++++|+|+||||||||+|+|+| +.+|++|+|+++|.++...
T Consensus 1939 ~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~G------------ll~ptsG~I~i~G~~i~~~ 2006 (2272)
T TIGR01257 1939 RLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG------------DTTVTSGDATVAGKSILTN 2006 (2272)
T ss_pred EEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhC------------CCCCCccEEEECCEECcch
Confidence 35677888875 57999999998 999999999999999999999999 8899999999999987531
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCccc-------CCcc--------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGF-------NQPS--------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~-------~~~~--------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
. . ..+++++++||.+.. ++.|+..+ .... ++.+.+.+..+ .....|||||+|
T Consensus 2007 ~-~-----~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d---k~~~~LSGGqKq 2077 (2272)
T TIGR01257 2007 I-S-----DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD---RLAGTYSGGNKR 2077 (2272)
T ss_pred H-H-----HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc---CChhhCCHHHHH
Confidence 1 1 145679999997522 22222111 0000 00111111111 123449999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|+.++.++ +++|.++++||| ...+...++++++...
T Consensus 2078 RLslA~AL-i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~ 2119 (2272)
T TIGR01257 2078 KLSTAIAL-IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE 2119 (2272)
T ss_pred HHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999 999999999954 4555555666666443
No 339
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.63 E-value=1.1e-16 Score=166.64 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=107.6
Q ss_pred CCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++.+.++|.. ..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|+++.
T Consensus 6 ~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G------------l~~~~~G~i~~~g~~i~ 73 (648)
T PRK10535 6 ELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGC------------LDKPTSGTYRVAGQDVA 73 (648)
T ss_pred EEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEcC
Confidence 35667777753 35899999998 999999999999999999999999 89999999999999887
Q ss_pred cccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHh---------hhhHHHHHhcCccccc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLA---------QTFPEIKEMLKANEPA 273 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~---------~~~~~~~~~LSgGq~q 273 (327)
..+.... ....++.+++++|++.. ++.|+..+... ....... ... .........||+||+|
T Consensus 74 ~~~~~~~-~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 74 TLDADAL-AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV-YAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred cCCHHHH-HHHHhccEEEEeCCcccCCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH
Confidence 6543210 00024679999997532 11222111000 0000000 000 0011112349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+.+++|+ +.+|+++++|+| .-.+.+.++++++.+
T Consensus 152 rv~LAraL-~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~ 192 (648)
T PRK10535 152 RVSIARAL-MNGGQVILADEPTGALDSHSGEEVMAILHQLRD 192 (648)
T ss_pred HHHHHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999 999999999955 466666777777654
No 340
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.4e-16 Score=145.00 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=111.7
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|.++.+|++|+..+ +|+..+|+|+||||||||+++|+| .+.|++|.+.+.|...+...
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~------------~~~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG------------EHPPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhc------------ccCCCCCceeeeeeeccCCc
Confidence 45788999999999999999998 999999999999999999999999 78999999999999887665
Q ss_pred ccCCCcceeeEEEEEEEccC------CCeE--------EeCcccCCccccccCHh---------HHhhhhHHHHHhcCcc
Q 020346 214 TKSGRGKHTTRHVSLLPLSG------GGYL--------ADTPGFNQPSLLKVTKQ---------SLAQTFPEIKEMLKAN 270 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~------~~~i--------~Dtpg~~~~~l~~~~~~---------~l~~~~~~~~~~LSgG 270 (327)
.. ...+++||++.-.- +..+ .++.|+-.......... .+.+....-...||-|
T Consensus 100 ~~----~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~G 175 (257)
T COG1119 100 TI----FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQG 175 (257)
T ss_pred ch----HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHh
Confidence 41 11678888875321 1111 23333332111111111 1111111123349999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+||+-|++++ ++.|.++|+|+| .-.+.+++.+.++..
T Consensus 176 e~rrvLiaRAL-v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~ 219 (257)
T COG1119 176 EQRRVLIARAL-VKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219 (257)
T ss_pred HHHHHHHHHHH-hcCCCEEEecCccccCChHHHHHHHHHHHHHhc
Confidence 99999999999 999999999965 344556666666543
No 341
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.62 E-value=4.5e-15 Score=131.39 Aligned_cols=146 Identities=23% Similarity=0.328 Sum_probs=96.2
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH----HHHHH--hhhhhcCC---ceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWK--SRLHTWGY---EPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~----~~~~~--~~~~~~~~---~~~~~s 143 (327)
...++|.+++|+++..|..+.. ..+ .....++|+++|+||+|+.+.+. ...|. ..+...++ ..+.+|
T Consensus 31 ~~~~ad~il~VvD~~~~~~~~~--~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vS 106 (190)
T cd01855 31 ISPKKALVVHVVDIFDFPGSLI--PRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILIS 106 (190)
T ss_pred cccCCcEEEEEEECccCCCccc--hhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEE
Confidence 4678999999999876543321 121 12235789999999999975432 22232 11122333 567889
Q ss_pred CcchhhHHHHHhhc-----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCC
Q 020346 144 VESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~ 218 (327)
..++.+++.+...+ .+..++|+|.||+|||||+|+|.+.... .+. ...-...+..+
T Consensus 107 A~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~-----------~~~------~~~~~~~~~~~-- 167 (190)
T cd01855 107 AKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNG-----------KKK------LKDLLTTSPIP-- 167 (190)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhccc-----------ccc------cccccccCCCC--
Confidence 88888887776554 4578999999999999999999983210 000 00001222222
Q ss_pred cceeeEEEEEEEccCCCeEEeCccc
Q 020346 219 GKHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 219 g~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
+||++...++...+.+++||||+
T Consensus 168 --gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 168 --GTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred --CeeeeeEEEecCCCCEEEeCcCC
Confidence 38999988888767899999996
No 342
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=1.8e-16 Score=146.03 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=100.1
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
-.+++++||.+ +|++++++|+|||||||+|++|.| +..|++|.|.++|.+.-.-.. ..-++
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTG------------ll~p~~G~v~V~G~~Pf~~~~------~~~~~ 98 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG------------LLLPTSGKVRVNGKDPFRRRE------EYLRS 98 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhC------------ccccCCCeEEecCcCcchhHH------HHHHH
Confidence 45889999998 899999999999999999999999 889999999999976433111 12334
Q ss_pred EEEEEccCCCeEEeCcccCCcccc----ccCHhHHhhh-------------hHHHHHhcCccccccccccccccccCCce
Q 020346 226 VSLLPLSGGGYLADTPGFNQPSLL----KVTKQSLAQT-------------FPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg~~~~~l~----~~~~~~l~~~-------------~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
++++.-.......|.|......+. .+....-.+. ...-.+.||-||+.||.++.++ +|.|.+
T Consensus 99 ~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaL-Lh~p~V 177 (325)
T COG4586 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAAL-LHPPKV 177 (325)
T ss_pred HHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHh-cCCCcE
Confidence 444433223355666644332211 1111111111 1112345999999999999888 999999
Q ss_pred EEcccHH------HHHHHHHHHHHHHHhH
Q 020346 289 VVKGDWE------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 289 ~v~~~~~------r~~~~~~ll~e~~~~~ 311 (327)
+++|+|. -....+++++|.....
T Consensus 178 LfLDEpTvgLDV~aq~~ir~Flke~n~~~ 206 (325)
T COG4586 178 LFLDEPTVGLDVNAQANIREFLKEYNEER 206 (325)
T ss_pred EEecCCccCcchhHHHHHHHHHHHHHHhh
Confidence 9999663 5566677788776544
No 343
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.61 E-value=7.8e-17 Score=182.46 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=106.1
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.+.|+ ++.+++++++.+ +|++++|+|+||||||||+|+|+| +.+|++|+|+++|.++..
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaG------------Ll~PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTG------------LLPPTSGTVLVGGKDIET 996 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhc------------CCCCCceEEEECCEECcc
Confidence 34567778884 467999999998 999999999999999999999999 899999999999998753
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCc--c-------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQP--S-------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~--~-------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
.. . ..++.++++||.+.. ++.|+..+... . ++.+...+..+. ....|||||+
T Consensus 997 ~~-~-----~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~---~~~~LSGGqK 1067 (2272)
T TIGR01257 997 NL-D-----AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE---EAQDLSGGMQ 1067 (2272)
T ss_pred hH-H-----HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC---ChhhCCHHHH
Confidence 21 1 145679999997522 22222221100 0 001111111111 1234999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||++++.++ +++|.++++||| ...+...++++++
T Consensus 1068 QRLsLArAL-i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1068 RKLSVAIAF-VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred HHHHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 999999999 999999999965 3445555666665
No 344
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.61 E-value=4.9e-17 Score=164.93 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=95.3
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|+++|.++...+.... ....++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G------------l~~p~~G~i~~~g~~i~~~~~~~~----~~~~i~ 341 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYG------------LRPARGGRIMLNGKEINALSTAQR----LARGLV 341 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcC------------CCCCCCcEEEECCEECCCCCHHHH----HhCCcE
Confidence 578888887 899999999999999999999999 889999999999988754432110 234689
Q ss_pred EEEccCC---C----eEEeCccc---C--Ccccccc-C---HhH------Hh-hhhHHHHHhcCcccccccccccccccc
Q 020346 228 LLPLSGG---G----YLADTPGF---N--QPSLLKV-T---KQS------LA-QTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 228 ~v~q~~~---~----~i~Dtpg~---~--~~~l~~~-~---~~~------l~-~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
|+||.+. . ++.++... . ......- . ..+ +. .........|||||+||+.+++++ +.
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al-~~ 420 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL-EA 420 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH-hh
Confidence 9998631 1 11121100 0 0000000 0 001 10 001111234999999999999999 88
Q ss_pred CCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|.++|+|+| ...+.+.+++.++..
T Consensus 421 ~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~ 451 (510)
T PRK15439 421 SPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451 (510)
T ss_pred CCCEEEECCCCcCcChhHHHHHHHHHHHHHh
Confidence 9999999965 355556666666654
No 345
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.61 E-value=1.4e-16 Score=153.08 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=83.5
Q ss_pred EEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC----eEEe
Q 020346 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG----YLAD 239 (327)
Q Consensus 164 lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~D 239 (327)
|+|+||||||||+++|+| +++|++|+|+++|.++...+. ..++++|++|.+.. ++.+
T Consensus 1 l~G~nGsGKSTLl~~iaG------------l~~p~~G~I~i~g~~i~~~~~-------~~~~i~~v~q~~~l~~~~tv~e 61 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAG------------FEQPDSGSIMLDGEDVTNVPP-------HLRHINMVFQSYALFPHMTVEE 61 (325)
T ss_pred CcCCCCCCHHHHHHHHHC------------CCCCCceEEEECCEECCCCCH-------HHCCEEEEecCccccCCCcHHH
Confidence 689999999999999999 899999999999998765432 24578999997532 3333
Q ss_pred CcccCCc--cc-------------cccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH------HHHH
Q 020346 240 TPGFNQP--SL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQ 298 (327)
Q Consensus 240 tpg~~~~--~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~ 298 (327)
+..+... .. +.+......+.. ...|||||+||+++++++ +.+|.++++|+| ...+
T Consensus 62 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgGq~qRvalaraL-~~~p~lllLDEP~s~LD~~~~~ 137 (325)
T TIGR01187 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRK---PHQLSGGQQQRVALARAL-VFKPKILLLDEPLSALDKKLRD 137 (325)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCC---hhhCCHHHHHHHHHHHHH-HhCCCEEEEeCCCccCCHHHHH
Confidence 3322110 00 000001111111 234999999999999999 999999999965 4445
Q ss_pred HHHHHHHHHHH
Q 020346 299 YYFQLLDEIRI 309 (327)
Q Consensus 299 ~~~~ll~e~~~ 309 (327)
.+.++++++..
T Consensus 138 ~l~~~l~~l~~ 148 (325)
T TIGR01187 138 QMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHHH
Confidence 55566666543
No 346
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.61 E-value=1.8e-16 Score=162.18 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=91.4
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.++++|+ ++.+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+++
T Consensus 6 ~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G------------~~~p~~G~i~~~~------- 66 (552)
T TIGR03719 6 TMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG------------VDKEFNGEARPAP------- 66 (552)
T ss_pred EEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEecC-------
Confidence 3567888887 667999999998 899999999999999999999999 8899999998863
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc----------------ccccC-------------------H-
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS----------------LLKVT-------------------K- 253 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~----------------l~~~~-------------------~- 253 (327)
...++|++|.+.. ++.|+..+.... ..... .
T Consensus 67 ---------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (552)
T TIGR03719 67 ---------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137 (552)
T ss_pred ---------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcc
Confidence 1258899997522 233332211000 00000 0
Q ss_pred ---hHHhhh--------hHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 254 ---QSLAQT--------FPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 254 ---~~l~~~--------~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
..+... .......|||||+||+.+++++ +.+|+++|+|+|
T Consensus 138 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al-~~~p~lLLLDEP 188 (552)
T TIGR03719 138 DLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL-LSKPDMLLLDEP 188 (552)
T ss_pred hhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHH-hcCCCEEEEcCC
Confidence 000000 0112235999999999999999 899999999965
No 347
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.61 E-value=2.1e-16 Score=161.78 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=95.1
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|++++.
T Consensus 325 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G------------~~~p~~G~i~~~~~-------- 384 (552)
T TIGR03719 325 AENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG------------QEQPDSGTIKIGET-------- 384 (552)
T ss_pred EeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCeEEEECCc--------
Confidence 345667777777999999998 999999999999999999999999 88999999988431
Q ss_pred CCCcceeeEEEEEEEccCC-----CeEEeCcccCCc--cccccC--HhHHhhh--h-----HHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG-----GYLADTPGFNQP--SLLKVT--KQSLAQT--F-----PEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~--~l~~~~--~~~l~~~--~-----~~~~~~LSgGq~q~~~~~~ 279 (327)
..++|++|.+. .++.++..+... ...... ...+... + ......|||||+||+.|++
T Consensus 385 --------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 385 --------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred --------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 14788888631 122222111100 000000 0001110 0 1112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
++ +.+|.++|+|+| ...+.+.+++.++
T Consensus 457 al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 489 (552)
T TIGR03719 457 TL-KSGGNVLLLDEPTNDLDVETLRALEEALLEF 489 (552)
T ss_pred HH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 99 999999999965 3445555555543
No 348
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=6.5e-15 Score=141.38 Aligned_cols=142 Identities=32% Similarity=0.514 Sum_probs=109.2
Q ss_pred ccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhc-CCceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~l 150 (327)
.+..+|.++.|.++..|..+.. .+++++ .+++.++|+||.||++.....+|...+.+- +...+..+.......
T Consensus 31 ~~~~~d~vvevvDar~P~~s~~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~ 105 (322)
T COG1161 31 VLKSVDVVVEVVDARDPLGTRNPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGG 105 (322)
T ss_pred hcccCCEEEEEEeccccccccCccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCc
Confidence 5789999999999999865544 678876 467779999999999999999999888765 566666655433332
Q ss_pred HHHH--------hh---c--CC-----CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 151 DSLL--------QR---L--RD-----QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 151 ~~l~--------~~---l--~g-----~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
..+. .. + .| ..++|||.|+||||||||.|+|.. ...+
T Consensus 106 ~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~-------------------------~~~~ 160 (322)
T COG1161 106 KKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKK-------------------------VAKT 160 (322)
T ss_pred cchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhccc-------------------------ceee
Confidence 2222 11 1 22 689999999999999999999943 2344
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l 248 (327)
+..+| +|++.++++...+.+++||||+..+..
T Consensus 161 s~~PG----~Tk~~q~i~~~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 161 SNRPG----TTKGIQWIKLDDGIYLLDTPGIIPPKF 192 (322)
T ss_pred CCCCc----eecceEEEEcCCCeEEecCCCcCCCCc
Confidence 44555 999999999999999999999987654
No 349
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.60 E-value=2e-14 Score=126.20 Aligned_cols=136 Identities=29% Similarity=0.356 Sum_probs=89.9
Q ss_pred cEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcc----------
Q 020346 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES---------- 146 (327)
Q Consensus 78 D~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~---------- 146 (327)
|.++.|.++..|..+ ...+.+++. ....++|.++|+||+||++++....|...+........+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKS 79 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhcc
Confidence 789999999887443 234555432 23457899999999999998888888888766432222211110
Q ss_pred ---------------hhhHHHHH---hhc--C-----CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccc
Q 020346 147 ---------------KLGLDSLL---QRL--R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (327)
Q Consensus 147 ---------------~~~l~~l~---~~l--~-----g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~ 201 (327)
..+.+.+. ... + .-.++++|.||+|||||+|+|.|..
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~------------------ 141 (172)
T cd04178 80 VKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSR------------------ 141 (172)
T ss_pred cccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcc------------------
Confidence 00011111 111 1 2489999999999999999999933
Q ss_pred eeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeCccc
Q 020346 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (327)
Q Consensus 202 i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~ 243 (327)
...++..+| +|++..+++.+.+.+++||||+
T Consensus 142 -------~~~~~~~pg----~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 142 -------ACNVGATPG----VTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred -------cceecCCCC----eEcceEEEEeCCCEEEEECcCC
Confidence 122333334 8888888888777889999996
No 350
>PRK13409 putative ATPase RIL; Provisional
Probab=99.60 E-value=2.5e-16 Score=162.23 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=90.4
Q ss_pred eeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCC
Q 020346 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~ 218 (327)
++++|++. .++++++.+ +|++++|+|+||+|||||+++|+| +.+|++|+|.++ .
T Consensus 346 ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~G------------l~~p~~G~I~~~-~----------- 400 (590)
T PRK13409 346 LTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG------------VLKPDEGEVDPE-L----------- 400 (590)
T ss_pred eEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEEe-e-----------
Confidence 44445432 377788877 899999999999999999999999 889999999875 1
Q ss_pred cceeeEEEEEEEccCC----CeEEeCcccCCc----------cccccCHhHHhhhhHHHHHhcCcccccccccccccccc
Q 020346 219 GKHTTRHVSLLPLSGG----GYLADTPGFNQP----------SLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 219 g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~----------~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
.++|+||... .++.|+..+... .++.+...+..+.. ...|||||+||+++++++ +.
T Consensus 401 ------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---~~~LSGGe~QRvaiAraL-~~ 470 (590)
T PRK13409 401 ------KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKN---VKDLSGGELQRVAIAACL-SR 470 (590)
T ss_pred ------eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCC---cccCCHHHHHHHHHHHHH-hc
Confidence 3677777642 122222111100 01111111112222 234999999999999999 99
Q ss_pred CCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 285 ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+|+++|+|+| .......++++++..
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~ 501 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAE 501 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 9999999965 355555566666644
No 351
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.60 E-value=2.7e-16 Score=161.10 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=94.6
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|+++.+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|++++.
T Consensus 327 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G------------~~~p~~G~i~~~~~-------- 386 (556)
T PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG------------QEQPDSGTIKIGET-------- 386 (556)
T ss_pred EEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCc--------
Confidence 345566777777999999998 999999999999999999999999 88999999988431
Q ss_pred CCCcceeeEEEEEEEccC-C----CeEEeCcccCCc--c-----------ccccCHh-HHhhhhHHHHHhcCcccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSG-G----GYLADTPGFNQP--S-----------LLKVTKQ-SLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~-~----~~i~Dtpg~~~~--~-----------l~~~~~~-~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
..++|+||.. . .++.++..+... . +..+... ..... ....|||||+||+.
T Consensus 387 --------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 --------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQK---KVGVLSGGERNRLH 455 (556)
T ss_pred --------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcC---chhhCCHHHHHHHH
Confidence 1478888863 1 122222211100 0 0001110 00111 12349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|++++ +.+|.++|+|+| ...+.+.+++.++
T Consensus 456 la~al-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 491 (556)
T PRK11819 456 LAKTL-KQGGNVLLLDEPTNDLDVETLRALEEALLEF 491 (556)
T ss_pred HHHHH-hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence 99999 999999999965 3444444555543
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.59 E-value=3.2e-16 Score=162.95 Aligned_cols=140 Identities=15% Similarity=0.210 Sum_probs=93.3
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|++ |..
T Consensus 323 ~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G------------~~~p~~G~i~~-~~~-------- 381 (635)
T PRK11147 323 ENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG------------QLQADSGRIHC-GTK-------- 381 (635)
T ss_pred eeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCcEEEE-CCC--------
Confidence 45677777777899999998 999999999999999999999999 88999999987 322
Q ss_pred CCcceeeEEEEEEEccCC-----CeEEeCcccCCccc--ccc--CHhHHhhh--h-----HHHHHhcCcccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGG-----GYLADTPGFNQPSL--LKV--TKQSLAQT--F-----PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~-----~~i~Dtpg~~~~~l--~~~--~~~~l~~~--~-----~~~~~~LSgGq~q~~~~~~~ 280 (327)
..++|++|... .++.++..+..... ... ....+... + ......|||||+||+.|+++
T Consensus 382 -------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 382 -------LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred -------cEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 14777887531 12223222111000 000 00011110 1 11123499999999999998
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHH
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDE 306 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e 306 (327)
+ +.+|.++|+|+| ...+.+.+++++
T Consensus 455 l-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 485 (635)
T PRK11147 455 F-LKPSNLLILDEPTNDLDVETLELLEELLDS 485 (635)
T ss_pred H-hcCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 8 899999999965 344444444444
No 353
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=5e-16 Score=169.52 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=113.0
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.|+.+.++|.. +.+|++|++.+ +|+.+||||++|||||||+++|.+ +.+|.+|+|.|||.++.+
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFR------------l~e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFR------------LVEPAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHH------------hcCccCCeEEEcCeeccc
Confidence 567888999965 48999999998 899999999999999999999999 999999999999999999
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhhhHHH--------------------HHhcC
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQTFPEI--------------------KEMLK 268 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~--------------------~~~LS 268 (327)
++.++ .+++++.+||++ .+++..+ --..+..+.+++++..+.. -+.+|
T Consensus 1207 igL~d-----LRsrlsIIPQdPvLFsGTvR~N----LDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1207 IGLHD-----LRSRLSIIPQDPVLFSGTVRFN----LDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred ccHHH-----HHhcCeeeCCCCceecCccccc----cCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence 99877 789999999975 2222222 1111111112222111110 12389
Q ss_pred ccccccccccccccccCCceEEcc------cHHHHHHHHHHHHH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e 306 (327)
-||+|-+.+++++ +...+++|+| |++--...++.+++
T Consensus 1278 vGQRQLlCLARAL-Lr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1278 VGQRQLLCLARAL-LRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred hHHHHHHHHHHHH-hccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 9999999999999 9999999999 44555555555544
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.59 E-value=3.9e-16 Score=162.88 Aligned_cols=131 Identities=19% Similarity=0.256 Sum_probs=92.2
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++|. +..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.+++
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~G------------l~~~~~G~i~~~~------ 513 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE------------LWPVYGGRLTKPA------ 513 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEeecC------
Confidence 45677888884 447899999998 999999999999999999999999 8999999987642
Q ss_pred cccCCCcceeeEEEEEEEccCC---CeEEeCcccCCcc----ccccCHhHHhhh-----hHHH-------------HHhc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPS----LLKVTKQSLAQT-----FPEI-------------KEML 267 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~----l~~~~~~~l~~~-----~~~~-------------~~~L 267 (327)
+..++++||++. .++.|+..+.... ......+++.+. ..++ ...|
T Consensus 514 ----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~L 583 (659)
T TIGR00954 514 ----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVL 583 (659)
T ss_pred ----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCC
Confidence 236889999752 2333333221100 000011111100 0010 1359
Q ss_pred CccccccccccccccccCCceEEcccH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||||+||+++++++ +++|.++++|||
T Consensus 584 SgGqkQRl~iARal-~~~p~illLDEp 609 (659)
T TIGR00954 584 SGGEKQRIAMARLF-YHKPQFAILDEC 609 (659)
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 99999999999999 999999999965
No 355
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.59 E-value=7.3e-16 Score=143.99 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=84.7
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
..+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|.++|... .....
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~G------------l~~p~~G~I~~~g~~~-~~~~~---------- 93 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG------------SLSPTVGKVDRNGEVS-VIAIS---------- 93 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CcCCCceEEEECCEEe-EEecc----------
Confidence 45788999998 999999999999999999999999 8899999999988521 11100
Q ss_pred EEEEEccCCCeEEeCcccCCccccccCHhH-------------HhhhhHHHHHhcCccccccccccccccccCCceEEcc
Q 020346 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQS-------------LAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~-------------l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~ 292 (327)
..+ .+..++.++..+... ........ +..........||+||+||+.+++++ +.+|.++++|
T Consensus 94 ~~~---~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral-~~~p~iLlLD 168 (264)
T PRK13546 94 AGL---SGQLTGIENIEFKML-CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINI-TVNPDILVID 168 (264)
T ss_pred cCC---CCCCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH-hhCCCEEEEe
Confidence 000 011122222211000 00000000 00001111234999999999999999 9999999999
Q ss_pred cH------HHHHHHHHHHHHHH
Q 020346 293 DW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 293 ~~------~r~~~~~~ll~e~~ 308 (327)
+| ...+.+.+++.++.
T Consensus 169 EPt~gLD~~~~~~l~~~L~~~~ 190 (264)
T PRK13546 169 EALSVGDQTFAQKCLDKIYEFK 190 (264)
T ss_pred CccccCCHHHHHHHHHHHHHHH
Confidence 65 34455556666654
No 356
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.58 E-value=7e-15 Score=144.92 Aligned_cols=163 Identities=26% Similarity=0.361 Sum_probs=124.7
Q ss_pred CceEEeeecccccccccc---ccccccEEEEEeecCCCC-CChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHh
Q 020346 55 RRGMIENVFQRSTEILDP---PVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS 130 (327)
Q Consensus 55 ~~~~i~~i~~R~~~l~r~---~~anvD~lliv~~~~~p~-~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~ 130 (327)
+...+...++|.-+++|. .++-.|+|++++++.+|. |.+..|++|...... .+..++++||+||.++++...|..
T Consensus 150 ~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~-~K~~~LLvNKaDLl~~~qr~aWa~ 228 (562)
T KOG1424|consen 150 NEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP-SKANVLLVNKADLLPPEQRVAWAE 228 (562)
T ss_pred cCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcccc-ccceEEEEehhhcCCHHHHHHHHH
Confidence 345677888988888875 689999999999999995 456689999865443 467799999999999999999999
Q ss_pred hhhhcCCceeeccCcc------h-------hhHHHHHhh----------------------------------c------
Q 020346 131 RLHTWGYEPLFCSVES------K-------LGLDSLLQR----------------------------------L------ 157 (327)
Q Consensus 131 ~~~~~~~~~~~~s~~~------~-------~~l~~l~~~----------------------------------l------ 157 (327)
+|.+-.+.++++|+.. . ...++++.. +
T Consensus 229 YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~ 308 (562)
T KOG1424|consen 229 YFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTG 308 (562)
T ss_pred HHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCC
Confidence 9988777888777632 0 111111100 0
Q ss_pred ---C-CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC
Q 020346 158 ---R-DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 158 ---~-g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~ 233 (327)
+ -.++++||-|||||||+||+|+|. +...+|..+| -|+|++-+++.+
T Consensus 309 ~~~~~~vtVG~VGYPNVGKSSTINaLvG~-------------------------KkVsVS~TPG----kTKHFQTi~ls~ 359 (562)
T KOG1424|consen 309 ERYKDVVTVGFVGYPNVGKSSTINALVGR-------------------------KKVSVSSTPG----KTKHFQTIFLSP 359 (562)
T ss_pred cCCCceeEEEeecCCCCchhHHHHHHhcC-------------------------ceeeeecCCC----CcceeEEEEcCC
Confidence 0 048999999999999999999993 3345666677 678888899999
Q ss_pred CCeEEeCcccCCcc
Q 020346 234 GGYLADTPGFNQPS 247 (327)
Q Consensus 234 ~~~i~Dtpg~~~~~ 247 (327)
+..+.|+||+..+.
T Consensus 360 ~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 360 SVCLCDCPGLVFPS 373 (562)
T ss_pred CceecCCCCccccC
Confidence 99999999987664
No 357
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.58 E-value=3.7e-16 Score=157.34 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=93.8
Q ss_pred CCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.++.++++|.+ +.+++++++.+ +|++++|+|+||+|||||+++|+| +++|++|+|+++|.+..
T Consensus 23 ~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaG------------Ll~P~sGeI~I~G~~~~- 89 (549)
T PRK13545 23 KLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAG------------VTMPNKGTVDIKGSAAL- 89 (549)
T ss_pred EEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhC------------CCCCCceEEEECCEeee-
Confidence 45667777765 35899999998 999999999999999999999999 88999999999986521
Q ss_pred ccccCCCcceeeEEEEEEEccCCCeEEeCcccCC--ccc--cc--------cCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ--PSL--LK--------VTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~--~~l--~~--------~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
+ .....+.+ ..++.++..+.. ... .. ++...+..........|||||+||+++++
T Consensus 90 i----------~~~~~l~~---~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 90 I----------AISSGLNG---QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred E----------EeccccCC---CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHH
Confidence 0 00111111 122222221100 000 00 00000111111112349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++|+|+| ...+.+.+++.++..
T Consensus 157 AL-~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~ 191 (549)
T PRK13545 157 SV-HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE 191 (549)
T ss_pred HH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 99 899999999965 344455566666543
No 358
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=8.1e-16 Score=159.99 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=92.7
Q ss_pred ceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
+.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +.+|++|+|++++.
T Consensus 316 ~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G------------~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 316 EKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG------------ELAPVSGEIGLAKG--------- 374 (638)
T ss_pred EeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeEEECCC---------
Confidence 34566777777899999998 999999999999999999999999 88999999998521
Q ss_pred CCcceeeEEEEEEEccCC--CeEEeCcc--cC--CccccccCHhHHhhh--h-H----HHHHhcCccccccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGG--GYLADTPG--FN--QPSLLKVTKQSLAQT--F-P----EIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~--~~i~Dtpg--~~--~~~l~~~~~~~l~~~--~-~----~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
..++|++|... .....++. +. ......-....+... + + .....|||||+||+.+++++ +
T Consensus 375 -------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l-~ 446 (638)
T PRK10636 375 -------IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIV-W 446 (638)
T ss_pred -------EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHH-h
Confidence 24778887521 11101110 00 000000000011110 1 1 11244999999999999998 8
Q ss_pred cCCceEEcccH------HHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 284 ~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
.+|.++|+|+| ...+.+.+++.++
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 476 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF 476 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 99999999965 3444555555443
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.58 E-value=4.7e-16 Score=137.01 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=81.8
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
...+++++++.+ +|++++|+||||||||||+|+|++ ++|++.+++... .. .+.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----------------~~G~v~~~~~~~-~~---------~~~ 60 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----------------ASGKARLISFLP-KF---------SRN 60 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----------------cCCcEEECCccc-cc---------ccc
Confidence 356789999998 899999999999999999999864 478888765421 11 122
Q ss_pred EEEEEEccCCCeEEeCcccCCccccccCHhHH-hhhhHHHHHhcCccccccccccccccccC--CceEEcccH------H
Q 020346 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEIKEMLKANEPAKCSFNNCLHLGE--PGCVVKGDW------E 295 (327)
Q Consensus 225 ~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l-~~~~~~~~~~LSgGq~q~~~~~~~~h~~e--p~~~v~~~~------~ 295 (327)
.+.+++|. ..++.+..... .... ...||+||+||+++++++ +.+ |+++++|+| .
T Consensus 61 ~~~~~~q~-------------~~l~~~~L~~~~~~~~---~~~LSgGq~qrl~laral-~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 61 KLIFIDQL-------------QFLIDVGLGYLTLGQK---LSTLSGGELQRVKLASEL-FSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred cEEEEhHH-------------HHHHHcCCCccccCCC---cCcCCHHHHHHHHHHHHH-hhCCCCCEEEEeCCcccCCHH
Confidence 35666651 11222222111 1112 234999999999999999 889 999999965 3
Q ss_pred HHHHHHHHHHHHH
Q 020346 296 RYQYYFQLLDEIR 308 (327)
Q Consensus 296 r~~~~~~ll~e~~ 308 (327)
..+.+.++++++.
T Consensus 124 ~~~~l~~~l~~~~ 136 (176)
T cd03238 124 DINQLLEVIKGLI 136 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 5555556666654
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.6e-15 Score=157.87 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=55.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
.++.++++|++..+++++++.+ +|++++|+|+||||||||+|+|+| +++|++|+|++++.
T Consensus 3 ~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G------------~~~pd~G~I~~~~~ 63 (638)
T PRK10636 3 VFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN------------EISADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEecCC
Confidence 3567889998888999999998 999999999999999999999999 88999999999874
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.57 E-value=7.1e-16 Score=161.98 Aligned_cols=130 Identities=17% Similarity=0.272 Sum_probs=87.4
Q ss_pred CceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++|+. ..+++++++.+ +|++++|+|+||||||||+++|+| +.+|++|+|++++
T Consensus 511 ~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G------------ll~p~~G~I~~~~-------- 570 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG------------ELQPSSGTVFRSA-------- 570 (718)
T ss_pred EEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCceEEECC--------
Confidence 3456677753 45899999998 899999999999999999999999 8899999998753
Q ss_pred cCCCcceeeEEEEEEEccC--CCeEEeCcccCCc-cccccCHhHH---hhhh-------HHHHHhcCccccccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSG--GGYLADTPGFNQP-SLLKVTKQSL---AQTF-------PEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~--~~~i~Dtpg~~~~-~l~~~~~~~l---~~~~-------~~~~~~LSgGq~q~~~~~~~~ 281 (327)
...++|++|.. ...+.+++.+... .........+ ...+ ......|||||+||++|++++
T Consensus 571 --------~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 571 --------KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred --------ceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHH
Confidence 13578888863 1112222110000 0000001111 1100 001234999999999999998
Q ss_pred cccCCceEEcccHH
Q 020346 282 HLGEPGCVVKGDWE 295 (327)
Q Consensus 282 h~~ep~~~v~~~~~ 295 (327)
+.+|.++|+|+|.
T Consensus 643 -~~~p~lLLLDEPT 655 (718)
T PLN03073 643 -FKKPHILLLDEPS 655 (718)
T ss_pred -hcCCCEEEEcCCC
Confidence 8999999999763
No 362
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.57 E-value=1.5e-15 Score=146.41 Aligned_cols=128 Identities=23% Similarity=0.333 Sum_probs=94.8
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
-.+++++++.+ +|++++|||.||||||||-.+|++ +.+++ |+|+|+|+++...+.+.. +..++.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr------------L~~s~-G~I~F~G~~i~~~~~~~m--rplR~~ 364 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR------------LIPSQ-GEIRFDGQDIDGLSRKEM--RPLRRR 364 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh------------hcCcC-ceEEECCccccccChhhh--hhhhhh
Confidence 35788999998 999999999999999999999999 77776 999999999998876543 447889
Q ss_pred EEEEEccCCCeEEeCcc------------cCCccccccCH-h-------------HHhhhhHHHHHhcCccccccccccc
Q 020346 226 VSLLPLSGGGYLADTPG------------FNQPSLLKVTK-Q-------------SLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg------------~~~~~l~~~~~-~-------------~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
++.|+|++-+.+ +|. +..+.+..-+. . .....||.- .||||+||+++|+
T Consensus 365 mQvVFQDPygSL--sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE---FSGGQRQRIAIAR 439 (534)
T COG4172 365 MQVVFQDPYGSL--SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE---FSGGQRQRIAIAR 439 (534)
T ss_pred ceEEEeCCCCCC--CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc---cCcchhhHHHHHH
Confidence 999999873322 111 11111111000 0 112233333 8999999999999
Q ss_pred cccccCCceEEcccHH
Q 020346 280 CLHLGEPGCVVKGDWE 295 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~~ 295 (327)
++ +-+|..+++|+|.
T Consensus 440 Al-iLkP~~i~LDEPT 454 (534)
T COG4172 440 AL-ILKPELILLDEPT 454 (534)
T ss_pred HH-hcCCcEEEecCCc
Confidence 99 8899999999764
No 363
>PRK13409 putative ATPase RIL; Provisional
Probab=99.56 E-value=2.2e-16 Score=162.63 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=94.5
Q ss_pred eeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee-----------ecc
Q 020346 140 LFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FED 206 (327)
Q Consensus 140 ~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~g 206 (327)
+.++|+. ..+|++++ .+ +|++++|+||||+|||||+|+|+| +++|++|+|. ++|
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G------------~l~p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSG------------ELIPNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhC------------CccCCCccccCCCcHHHHHHHhCC
Confidence 5567765 35889998 55 999999999999999999999999 8999999997 888
Q ss_pred eeeccccccCCCc-ceeeEEEEEEEccCCC---eEEeCcccCC------ccccccCHhHHhhhhHHHHHhcCcccccccc
Q 020346 207 QRVGEVSTKSGRG-KHTTRHVSLLPLSGGG---YLADTPGFNQ------PSLLKVTKQSLAQTFPEIKEMLKANEPAKCS 276 (327)
Q Consensus 207 ~~v~~~s~~~~~g-~~tt~~i~~v~q~~~~---~i~Dtpg~~~------~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~ 276 (327)
.++.........+ .......+++++.+.. .+.|...... ..++.+.+....+. ....|||||+||++
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~---~~~~LSgGe~qrv~ 222 (590)
T PRK13409 146 TELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDR---DISELSGGELQRVA 222 (590)
T ss_pred hHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcC---ChhhCCHHHHHHHH
Confidence 8876543210000 0012223333332211 1111100000 00111111111111 12349999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++.++ +.+|+++++|+| .....+.++++++.+
T Consensus 223 ia~al-~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~ 260 (590)
T PRK13409 223 IAAAL-LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE 260 (590)
T ss_pred HHHHH-hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Confidence 99998 899999999965 355555566666643
No 364
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.56 E-value=7.4e-16 Score=139.38 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=76.5
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee-ecceeeccccccCCCcceeeEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-FEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~-~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|. +++..+. +. ...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G------------l~~~~sG~i~~~~~~~~~-~~----------~~~ 58 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCG------------LDAPDEGDFIGLRGDALP-LG----------ANS 58 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CccCCCCCEEEecCceec-cc----------ccc
Confidence 577889998 899999999999999999999999 8899999997 7765321 10 001
Q ss_pred EEEEccCCCeEEeCcccCCc--cc--ccc-----CHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 227 SLLPLSGGGYLADTPGFNQP--SL--LKV-----TKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 227 ~~v~q~~~~~i~Dtpg~~~~--~l--~~~-----~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.+.+ ..++.++..+... .. ... ....+..........||+||+||++|++++ +.+|.++++|+|
T Consensus 59 ~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al-~~~p~llllDEP 131 (213)
T PRK15177 59 FILP---GLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINL-LLPCRLYIADGK 131 (213)
T ss_pred ccCC---cCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHH-hcCCCEEEECCC
Confidence 1111 1222222211000 00 000 000111111222345999999999999999 999999999975
No 365
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.5e-16 Score=152.73 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=114.3
Q ss_pred hhhcCCceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 132 LHTWGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 132 ~~~~~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
..++.++++.++|... --+..+++.+ +|+.+-|+|.||||||||+++|.| +|+|++|+|.+||.++
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtG------------L~~PqsG~I~ldg~pV 387 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG------------LYQPQSGEILLDGKPV 387 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhc------------ccCCCCCceeECCccC
Confidence 4556778888888654 4567788887 899999999999999999999999 9999999999999999
Q ss_pred ccccccCCCcceeeEEEEEEEccCCCeEEeC-cccCC--------ccccccCHhHHhhhh-HHH-HHhcCcccccccccc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADT-PGFNQ--------PSLLKVTKQSLAQTF-PEI-KEMLKANEPAKCSFN 278 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt-pg~~~--------~~l~~~~~~~l~~~~-~~~-~~~LSgGq~q~~~~~ 278 (327)
..-+..+ +++-++-++-+ .++.|+ .|-.. ..++.+++...-... .++ .-.||-||++|+++-
T Consensus 388 ~~e~led-----YR~LfSavFsD--yhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 388 SAEQLED-----YRKLFSAVFSD--YHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred CCCCHHH-----HHHHHHHHhhh--HhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence 8766543 44444433332 233332 11111 112222211111000 000 112999999999999
Q ss_pred ccccccCCceEEcccH-------HHHHHHHHHHHHHHHhHHH
Q 020346 279 NCLHLGEPGCVVKGDW-------ERYQYYFQLLDEIRIREEF 313 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~-------~r~~~~~~ll~e~~~~~~~ 313 (327)
.++ +.|.++.|.|+| .|...|..++-.+++++|+
T Consensus 461 ~Al-lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT 501 (546)
T COG4615 461 LAL-LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 (546)
T ss_pred HHH-HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence 999 899999998865 3999999999999998875
No 366
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.55 E-value=1.7e-15 Score=157.11 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=96.3
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeeccccccCCCcc
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVSTKSGRGK 220 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~~s~~~~~g~ 220 (327)
+++.+++++++.+ +|+.++|+||||||||||+|+|+| ..+|. +|+|.+||.++....
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g------------~~~~~~~~~G~i~~~g~~~~~~~------- 96 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAF------------RSPKGVKGSGSVLLNGMPIDAKE------- 96 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhC------------CCCCCCcceeEEEECCEECCHHH-------
Confidence 3567899999998 999999999999999999999999 55664 899999999875311
Q ss_pred eeeEEEEEEEccCC----CeEEeCcccCCcc-c-cccCHh----HHhhhhHH---------HH------HhcCccccccc
Q 020346 221 HTTRHVSLLPLSGG----GYLADTPGFNQPS-L-LKVTKQ----SLAQTFPE---------IK------EMLKANEPAKC 275 (327)
Q Consensus 221 ~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-l-~~~~~~----~l~~~~~~---------~~------~~LSgGq~q~~ 275 (327)
.++.++|++|++. .++.|+..+.... . ..+... .+.....+ .. ..|||||+||+
T Consensus 97 -~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 97 -MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred -HhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 4567899999752 2444443322100 0 001101 11111111 11 24999999999
Q ss_pred cccccccccCCceEEcccHH------HHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
.+++++ +.+|.++++|||. ......+.++++.
T Consensus 176 sia~aL-~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~ 213 (617)
T TIGR00955 176 AFASEL-LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213 (617)
T ss_pred HHHHHH-HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHH
Confidence 999999 9999999999763 3333444445544
No 367
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.9e-15 Score=131.46 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=98.7
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc-----eeec
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-----QRVG 210 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-----~~v~ 210 (327)
...++.+|+...+.++++|.+ +|++.+|||.||+|||||+++|.+ -+.|++|+|.+.- .++-
T Consensus 9 V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~------------rl~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 9 VSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISG------------RLTPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhc------------ccCCCCCeEEEEcCCCCchhHh
Confidence 455677888889999999998 999999999999999999999999 6789999999875 2333
Q ss_pred cccccCCCcceeeEEEEEEEccC--CCeEEe----CcccCCccccccCHhHHh--------------hhhHHHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG--GGYLAD----TPGFNQPSLLKVTKQSLA--------------QTFPEIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~--~~~i~D----tpg~~~~~l~~~~~~~l~--------------~~~~~~~~~LSgG 270 (327)
..+.. .+.+-.++.-+++.|++ +.-+-- +.|.+......-...++. ....+....+|||
T Consensus 77 ~msEa-eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 77 TMSEA-ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhchH-HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 44433 23344677889999986 221111 122111110000001110 1112223458999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+.+++-+ +..|.+.++|+|
T Consensus 156 MqQRLQiARnL-Vt~PrLvfMDEP 178 (258)
T COG4107 156 MQQRLQIARNL-VTRPRLVFMDEP 178 (258)
T ss_pred HHHHHHHHHHh-ccCCceEEecCC
Confidence 99999999999 899999999865
No 368
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.55 E-value=1.7e-15 Score=169.06 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=102.4
Q ss_pred CceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc---ccccceeeccee
Q 020346 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQR 208 (327)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~ 208 (327)
++.+.+++. .+.+|+++++.+ +|+.++|+||||||||||+|+|+| +.+ |++|+|.+||.+
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag------------~~~~g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE------------RVTTGVITGGDRLVNGRP 829 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC------------CCCCCCcceeEEEECCEE
Confidence 455555553 456899999998 999999999999999999999999 555 789999999998
Q ss_pred eccccccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc-c-cccCHhHHhhhhHHH-------------HH----
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS-L-LKVTKQSLAQTFPEI-------------KE---- 265 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-l-~~~~~~~l~~~~~~~-------------~~---- 265 (327)
+.. . .++.+++++|++. .++.++..+.... . ......+..+...++ ..
T Consensus 830 ~~~----~-----~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~ 900 (1394)
T TIGR00956 830 LDS----S-----FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE 900 (1394)
T ss_pred CCh----h-----hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC
Confidence 742 1 4567899999742 2333333221100 0 001111110000011 11
Q ss_pred hcCccccccccccccccccCCc-eEEcccH------HHHHHHHHHHHHHHHh
Q 020346 266 MLKANEPAKCSFNNCLHLGEPG-CVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~-~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
.|||||+||+.++.++ +.+|+ ++++||| .......++++++...
T Consensus 901 ~LSgGqrqRl~Ia~aL-~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~ 951 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVEL-VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH 951 (1394)
T ss_pred CCCHHHhhHHHHHHHH-HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4999999999999999 89997 8999965 4555566667666543
No 369
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=3.5e-16 Score=138.09 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=101.0
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc-eeeccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-~~v~~~s~ 214 (327)
.+.+++||+.-.+++++++.+ +|+.-+||||||+||||++..|.| -.+|++|+++|+| .++...+.
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItG------------Ktrp~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG------------KTRPQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecc------------cCCCCcceEEEcCchhhccCCH
Confidence 467888999999999999998 999999999999999999999999 7799999999999 78877765
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCC---ccc-----ccc------------CHhHHhhhhHHHHHhcCcc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQ---PSL-----LKV------------TKQSLAQTFPEIKEMLKAN 270 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~---~~l-----~~~------------~~~~l~~~~~~~~~~LSgG 270 (327)
... .+..|+--+|.+. .++.|+.-+.. ..+ ... ..-.+.+........||.|
T Consensus 76 ~~I----Ar~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHG 151 (249)
T COG4674 76 HRI----ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHG 151 (249)
T ss_pred HHH----HHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccc
Confidence 443 4556666666542 23333321110 000 000 0001112222334559999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+|++.+...+ +.+|.++++|+|
T Consensus 152 qKQwLEIGMll-~Q~P~lLLlDEP 174 (249)
T COG4674 152 QKQWLEIGMLL-AQDPKLLLLDEP 174 (249)
T ss_pred hhhhhhhheee-ccCCcEEEecCc
Confidence 99999999666 999999999966
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=99.54 E-value=1.3e-15 Score=171.89 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=97.5
Q ss_pred hcCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc-cceeeccee
Q 020346 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFEDQR 208 (327)
Q Consensus 134 ~~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~-G~i~~~g~~ 208 (327)
.+.++.++++|.. +.+++++++.+ +|+.++|+|+||||||||+++|+| +++|++ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG------------~~~~~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLG------------ELPPRSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHH------------hhccCCCceEEE----
Confidence 3567888899863 56899999998 999999999999999999999999 899999 88863
Q ss_pred eccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhH---HhhhhHHHH--------------HhcC
Q 020346 209 VGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQS---LAQTFPEIK--------------EMLK 268 (327)
Q Consensus 209 v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~---l~~~~~~~~--------------~~LS 268 (327)
+..++|++|++ ++++.|+..+..+. +.-...+ .....+++. ..||
T Consensus 678 --------------~~~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LS 742 (1622)
T PLN03130 678 --------------RGTVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNIS 742 (1622)
T ss_pred --------------cCeEEEEcCccccCCCCHHHHHhCCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCC
Confidence 34689999986 56777777766542 1100110 001111111 1399
Q ss_pred ccccccccccccccccCCceEEcccH
Q 020346 269 ANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 269 gGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||+||+++|+++ +.+|++.|+||+
T Consensus 743 GGQKQRIaLARAl-y~~~~IlLLDEp 767 (1622)
T PLN03130 743 GGQKQRVSMARAV-YSNSDVYIFDDP 767 (1622)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEECCC
Confidence 9999999999999 999999999965
No 371
>PLN03232 ABC transporter C family member; Provisional
Probab=99.53 E-value=1.7e-15 Score=170.31 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=97.2
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.++++|.. +.+++++++.+ +|+.++|+|+||||||||+++|+| +++|++|.+.
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG------------~~~~~~G~i~------- 675 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG------------ELSHAETSSV------- 675 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCcccCCCEE-------
Confidence 567788899863 56899999998 999999999999999999999999 8999998753
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHH---hhhhHHHH--------------HhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSL---AQTFPEIK--------------EMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l---~~~~~~~~--------------~~LSgG 270 (327)
..+..++|++|++ ++++.|+..+..+. +.-...+. ....+++. ..||||
T Consensus 676 ----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~-~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGG 744 (1495)
T PLN03232 676 ----------VIRGSVAYVPQVSWIFNATVRENILFGSDF-ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGG 744 (1495)
T ss_pred ----------EecCcEEEEcCccccccccHHHHhhcCCcc-CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHH
Confidence 0455799999986 56777777766431 11011110 01111111 139999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++|+++ +.+|++.++||+
T Consensus 745 QkQRIaLARAl-y~~~~IlLLDEp 767 (1495)
T PLN03232 745 QKQRVSMARAV-YSNSDIYIFDDP 767 (1495)
T ss_pred HHHHHHHHHHH-hcCCCEEEEcCC
Confidence 99999999999 999999999966
No 372
>PRK13796 GTPase YqeH; Provisional
Probab=99.53 E-value=2.3e-13 Score=132.84 Aligned_cols=154 Identities=26% Similarity=0.372 Sum_probs=101.8
Q ss_pred EEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHH----HHHHHHhh-hhhcCC---ceeeccCcchhh
Q 020346 79 HLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKSR-LHTWGY---EPLFCSVESKLG 149 (327)
Q Consensus 79 ~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~~-~~~~~~---~~~~~s~~~~~~ 149 (327)
.++.|.++..+..+. ..+.++. .++++++|+||+||.+.. ....|... .+..++ +++.+|+.+..+
T Consensus 72 lIv~VVD~~D~~~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~g 146 (365)
T PRK13796 72 LVVNVVDIFDFNGSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHG 146 (365)
T ss_pred EEEEEEECccCCCchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCC
Confidence 777777776533232 2344433 378999999999997532 33445443 334565 467888888777
Q ss_pred HHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 150 LDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 150 l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
++.+...+ ++..++|||.||||||||||+|.+... |. .+....| ..++||+.
T Consensus 147 I~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~---------------~~-----~~~~~~s----~~pGTT~~ 202 (365)
T PRK13796 147 IDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEIT---------------GE-----KDVITTS----RFPGTTLD 202 (365)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhcc---------------Cc-----cceEEec----CCCCccce
Confidence 77766554 678999999999999999999997320 10 1111222 33459999
Q ss_pred EEEEEccCCCeEEeCcccCCc-c-ccccCHhHHhhhhH
Q 020346 226 VSLLPLSGGGYLADTPGFNQP-S-LLKVTKQSLAQTFP 261 (327)
Q Consensus 226 i~~v~q~~~~~i~Dtpg~~~~-~-l~~~~~~~l~~~~~ 261 (327)
...++.+.+.+++||||+... . ...++.+++...+|
T Consensus 203 ~~~~~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p 240 (365)
T PRK13796 203 KIEIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISP 240 (365)
T ss_pred eEEEEcCCCcEEEECCCccccchhhhcCCHHHHhhcCC
Confidence 999999878899999999643 2 23345555555444
No 373
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.52 E-value=2.3e-13 Score=132.56 Aligned_cols=143 Identities=29% Similarity=0.432 Sum_probs=100.1
Q ss_pred ccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHH----HHHHHHh-hhhhcCC---ceeeccCc
Q 020346 75 ANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCSVE 145 (327)
Q Consensus 75 anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~~s~~ 145 (327)
.+.|.++.|+++..+..+. ..+.+++ ..+++++|+||+||.+.. ....|.. .+...++ +++.+|+.
T Consensus 62 ~~~~~Il~VvD~~d~~~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk 136 (360)
T TIGR03597 62 DSNALIVYVVDIFDFEGSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK 136 (360)
T ss_pred cCCcEEEEEEECcCCCCCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCC
Confidence 4678999999986543332 2344443 378999999999997542 3344432 3445665 36778988
Q ss_pred chhhHHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 146 SKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 146 ~~~~l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
+..+++.+...+ .|..++|||.+|||||||+|.|++... .. .....++..++
T Consensus 137 ~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~~~----------~~----------~~~~~~s~~pg---- 192 (360)
T TIGR03597 137 KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNN----------GD----------KDVITTSPFPG---- 192 (360)
T ss_pred CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhhcc----------CC----------cceeeecCCCC----
Confidence 888887776554 577999999999999999999998321 00 01123343343
Q ss_pred eeEEEEEEEccCCCeEEeCcccCCc
Q 020346 222 TTRHVSLLPLSGGGYLADTPGFNQP 246 (327)
Q Consensus 222 tt~~i~~v~q~~~~~i~Dtpg~~~~ 246 (327)
+|+.+..++.+.+.+++||||+...
T Consensus 193 tT~~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 193 TTLDLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred eEeeEEEEEeCCCCEEEECCCCCCh
Confidence 8999888888777899999999865
No 374
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.52 E-value=1e-15 Score=159.14 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
.++.+.++|++..+++++++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+++.
T Consensus 5 ~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG------------~~~p~~G~I~~~~~ 65 (635)
T PRK11147 5 SIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG------------EVLLDDGRIIYEQD 65 (635)
T ss_pred EEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcC------------CCCCCCeEEEeCCC
Confidence 4567888888888999999998 899999999999999999999999 88999999998763
No 375
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.51 E-value=4e-15 Score=167.57 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=94.7
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|.+ +.+++++++.+ +|+.++|+|+||||||||+++|+| +++|++|+|.++|
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g------------~~~~~~G~i~~~g----- 699 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA------------EMDKVEGHVHMKG----- 699 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCccCCcEEEECC-----
Confidence 556778888864 46899999998 999999999999999999999999 8999999999875
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHh---hhhHHH--------------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLA---QTFPEI--------------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~---~~~~~~--------------~~~LSgGq 271 (327)
.++|+||++ ++++.|+..+.... +.-...+.. ...+++ ...|||||
T Consensus 700 -------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~-~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQ 765 (1522)
T TIGR00957 700 -------------SVAYVPQQAWIQNDSLRENILFGKAL-NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQ 765 (1522)
T ss_pred -------------EEEEEcCCccccCCcHHHHhhcCCcc-CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHH
Confidence 378888875 34555655543221 000001000 001111 12399999
Q ss_pred cccccccccccccCCceEEcccH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+++|+++ +.+|++.++|||
T Consensus 766 kqRiaLARAl-~~~~~illLDEp 787 (1522)
T TIGR00957 766 KQRVSLARAV-YSNADIYLFDDP 787 (1522)
T ss_pred HHHHHHHHHH-hcCCCEEEEcCC
Confidence 9999999999 999999999966
No 376
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.49 E-value=4.1e-15 Score=150.80 Aligned_cols=130 Identities=21% Similarity=0.173 Sum_probs=89.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.+..++++|+.+..++++++.+ +|+++||||+||+|||||+++|+| ...|++|+|...+
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG------------~~~~~~G~i~~~~-------- 64 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG------------ELEPDSGEVTRPK-------- 64 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcC------------CCcCCCCeEeecC--------
Confidence 3467888999999999999998 999999999999999999999999 7789999887432
Q ss_pred cCCCcceeeEEEEEEEccCCCe----EEeCcccCCcccccc-----------------CHhHHhhh--------------
Q 020346 215 KSGRGKHTTRHVSLLPLSGGGY----LADTPGFNQPSLLKV-----------------TKQSLAQT-------------- 259 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~~----i~Dtpg~~~~~l~~~-----------------~~~~l~~~-------------- 259 (327)
...+++++|+.... +.|........+..+ ...++...
T Consensus 65 --------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~ 136 (530)
T COG0488 65 --------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136 (530)
T ss_pred --------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHH
Confidence 23577888864221 111111100000000 00000000
Q ss_pred -------hH---HHHHhcCccccccccccccccccCCceEEcccH
Q 020346 260 -------FP---EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 260 -------~~---~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+ .-...|||||+.|+++|+++ +.+|+++++|+|
T Consensus 137 ~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL-~~~pDlLLLDEP 180 (530)
T COG0488 137 EALLGLGFPDEDRPVSSLSGGWRRRVALARAL-LEEPDLLLLDEP 180 (530)
T ss_pred HHHhcCCCCcccCchhhcCHHHHHHHHHHHHH-hcCCCEEEEcCC
Confidence 01 11244999999999999999 999999999966
No 377
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.49 E-value=1.5e-14 Score=162.64 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=85.4
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~ 225 (327)
+.+++++++.+ +|+.++|+||||||||||+++|+| +++|++|+|.++| .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G------------~~~~~~G~i~~~g------------------~ 488 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG------------ELEPSEGKIKHSG------------------R 488 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECC------------------E
Confidence 45899999998 999999999999999999999999 8999999999876 3
Q ss_pred EEEEEccC---CCeEEeCcccCCccc----cc-cCHhHHhh---hhHHH--------HHhcCccccccccccccccccCC
Q 020346 226 VSLLPLSG---GGYLADTPGFNQPSL----LK-VTKQSLAQ---TFPEI--------KEMLKANEPAKCSFNNCLHLGEP 286 (327)
Q Consensus 226 i~~v~q~~---~~~i~Dtpg~~~~~l----~~-~~~~~l~~---~~~~~--------~~~LSgGq~q~~~~~~~~h~~ep 286 (327)
++|++|.+ ++++.|+..|....- .. +....+.. .+|.- ...|||||+||+++++++ +.+|
T Consensus 489 iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl-~~~~ 567 (1490)
T TIGR01271 489 ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV-YKDA 567 (1490)
T ss_pred EEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH-HcCC
Confidence 78888875 334555554432110 00 00001111 11110 124999999999999999 9999
Q ss_pred ceEEcccH
Q 020346 287 GCVVKGDW 294 (327)
Q Consensus 287 ~~~v~~~~ 294 (327)
++.|+|||
T Consensus 568 ~illLDep 575 (1490)
T TIGR01271 568 DLYLLDSP 575 (1490)
T ss_pred CEEEEeCC
Confidence 99999966
No 378
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.49 E-value=1e-14 Score=140.67 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=107.0
Q ss_pred CceeeccCc----chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeecc
Q 020346 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFED 206 (327)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g 206 (327)
.+++++.|. ...++++++|.+ +|+++++||.||||||-..+.+++ +++- -+|+|.|+|
T Consensus 9 v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~------------LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG------------LLPSPAAAHPSGSILFDG 76 (534)
T ss_pred eeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHH------------hcCCCcccCccceeEEcC
Confidence 445555554 567899999998 999999999999999999999998 3332 379999999
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeE--EeCcc------------cCCc-----c---ccccCH---hHHhhhhH
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL--ADTPG------------FNQP-----S---LLKVTK---QSLAQTFP 261 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i--~Dtpg------------~~~~-----~---l~~~~~---~~l~~~~~ 261 (327)
.++-..+....++ -.-..|+|++|++-..+ .-|.| +... . ++.+.. +...+.||
T Consensus 77 ~dll~~se~~lr~-iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP 155 (534)
T COG4172 77 EDLLAASERQLRG-VRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP 155 (534)
T ss_pred hhhhcCCHHHHhh-hcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC
Confidence 9988877544221 12357999999862221 11111 1110 0 111111 12223444
Q ss_pred HHHHhcCccccccccccccccccCCceEEcccHH------HHHHHHHHHHHHHHh
Q 020346 262 EIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIR 310 (327)
Q Consensus 262 ~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~ 310 (327)
.. |||||+||+.++.++ .++|+++|.|+|. -....+.+++++..+
T Consensus 156 He---LSGGqRQRVMIAMAL-an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~ 206 (534)
T COG4172 156 HE---LSGGQRQRVMIAMAL-ANEPDLLIADEPTTALDVTVQAQILDLLKELQAE 206 (534)
T ss_pred cc---cCcchhhHHHHHHHH-cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH
Confidence 44 999999999999999 9999999999663 445556677776543
No 379
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.49 E-value=4.6e-15 Score=165.66 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=99.3
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
.+.+|+++++.+ +|+.++|+||||||||||+|+|+|... ....|++|+|.++|.++...... .++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~--------~~~~~~~G~I~~~G~~~~~~~~~------~r~ 138 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD--------GFHIGVEGVITYDGITPEEIKKH------YRG 138 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--------CCCCCceeEEEECCEehHHHHhh------cCc
Confidence 356899999998 999999999999999999999999321 02468999999999987654321 455
Q ss_pred EEEEEEccC----CCeEEeCcccCCc----c--ccccCHhHHh----h-hhHH--------------HHHhcCccccccc
Q 020346 225 HVSLLPLSG----GGYLADTPGFNQP----S--LLKVTKQSLA----Q-TFPE--------------IKEMLKANEPAKC 275 (327)
Q Consensus 225 ~i~~v~q~~----~~~i~Dtpg~~~~----~--l~~~~~~~l~----~-~~~~--------------~~~~LSgGq~q~~ 275 (327)
.+++++|++ ..++.++..+... . .......+.. + .... ..+.|||||+||+
T Consensus 139 ~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv 218 (1394)
T TIGR00956 139 DVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV 218 (1394)
T ss_pred eeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH
Confidence 799999974 2234444332110 0 0011111100 0 0000 1134999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.++.++ +.+|.++++|+| .....+.++++++.+
T Consensus 219 sIA~aL-~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~ 257 (1394)
T TIGR00956 219 SIAEAS-LGGAKIQCWDNATRGLDSATALEFIRALKTSAN 257 (1394)
T ss_pred HHHHHH-HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 999998 899999999965 344445566666654
No 380
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.48 E-value=2.1e-14 Score=145.64 Aligned_cols=125 Identities=22% Similarity=0.280 Sum_probs=84.3
Q ss_pred eeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 139 PLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 139 ~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
.+.++|.. +..++++++.+ +|++++||||||+|||||||+|.| ...|.+|+|.+.
T Consensus 326 ~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g------------~~~~~~G~v~~g----------- 382 (530)
T COG0488 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG------------ELGPLSGTVKVG----------- 382 (530)
T ss_pred ccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhh------------hcccCCceEEeC-----------
Confidence 34556644 47889999998 999999999999999999999999 667888887642
Q ss_pred CCcceeeEEEEEEEccCCCeEEe-Cc----ccCCccccccCHhHHhhhh----------HHHHHhcCccccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGGYLAD-TP----GFNQPSLLKVTKQSLAQTF----------PEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~~i~D-tp----g~~~~~l~~~~~~~l~~~~----------~~~~~~LSgGq~q~~~~~~~~ 281 (327)
.+..++|++|......-+ |+ .-..+.. ....+.... ......|||||+.||.|+.++
T Consensus 383 -----~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~---~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 383 -----ETVKIGYFDQHRDELDPDKTVLEELSEGFPDG---DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL 454 (530)
T ss_pred -----CceEEEEEEehhhhcCccCcHHHHHHhhCccc---cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHh
Confidence 346788999875221111 10 0000000 011111100 111344999999999999777
Q ss_pred cccCCceEEcccHH
Q 020346 282 HLGEPGCVVKGDWE 295 (327)
Q Consensus 282 h~~ep~~~v~~~~~ 295 (327)
+.+|.++|+|+|.
T Consensus 455 -~~~pNvLiLDEPT 467 (530)
T COG0488 455 -LQPPNLLLLDEPT 467 (530)
T ss_pred -ccCCCEEEEcCCC
Confidence 8999999999774
No 381
>PLN03140 ABC transporter G family member; Provisional
Probab=99.48 E-value=1.2e-14 Score=162.49 Aligned_cols=143 Identities=15% Similarity=0.219 Sum_probs=97.7
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeeccccccCCCcce
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
...+|+++++.+ +|+.++|+||||||||||+|+|+| ..+|+ +|+|.+||.++.+..
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG------------~l~~~~~~~G~I~~nG~~~~~~~-------- 236 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG------------KLDPSLKVSGEITYNGYRLNEFV-------- 236 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhC------------CCCCCCcceeEEEECCEechhhc--------
Confidence 456899999998 999999999999999999999999 77887 999999999876543
Q ss_pred eeEEEEEEEccC----CCeEEeCcccCCcc---------ccccCH-------------------------------h---
Q 020346 222 TTRHVSLLPLSG----GGYLADTPGFNQPS---------LLKVTK-------------------------------Q--- 254 (327)
Q Consensus 222 tt~~i~~v~q~~----~~~i~Dtpg~~~~~---------l~~~~~-------------------------------~--- 254 (327)
.++.++|++|.+ ..++.+|..|.... +..+.. .
T Consensus 237 ~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L 316 (1470)
T PLN03140 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTL 316 (1470)
T ss_pred ccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHH
Confidence 235689999974 23444443321100 000000 0
Q ss_pred ---HHhhhh-----HHHHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 255 ---SLAQTF-----PEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 255 ---~l~~~~-----~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.+.+.. .+..+.|||||+||+.++.++ +.+|.++++|+| .....+.++++++.+
T Consensus 317 ~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL-~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~ 384 (1470)
T PLN03140 317 KILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI-VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVH 384 (1470)
T ss_pred HHcCCccccCceeCCccccCCCcccceeeeehhhh-cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHH
Confidence 000000 111235999999999999988 999999999965 333444455555543
No 382
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.1e-15 Score=129.03 Aligned_cols=149 Identities=18% Similarity=0.216 Sum_probs=96.0
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.+.++-+....+.+++|.+ +|+.+.|.||||+|||||+++|+| +.+|++|+|.+++..+......
T Consensus 7 ~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaG------------Ll~p~~G~v~~~~~~i~~~~~~-- 72 (209)
T COG4133 7 NLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG------------LLRPDAGEVYWQGEPIQNVRES-- 72 (209)
T ss_pred hhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHc------------ccCCCCCeEEecCCCCccchhh--
Confidence 3444445566788999997 999999999999999999999999 9999999999999888766532
Q ss_pred CcceeeEEEEEEEccCC----CeEEeCcccCCcc------------ccccCHhHHhhhhHHHHHhcCccccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSGG----GYLADTPGFNQPS------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
+..+.-|+--.++ .+..++.-|-... ++.+....+.+. -...||.||++|+++++..
T Consensus 73 ----~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dl---p~~~LSAGQqRRvAlArL~ 145 (209)
T COG4133 73 ----YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL---PVGQLSAGQQRRVALARLW 145 (209)
T ss_pred ----HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccccc---chhhcchhHHHHHHHHHHH
Confidence 2222223221111 1222222211110 111111111111 1345999999999999988
Q ss_pred cccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 282 HLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 282 h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+..+.+-|+|+| +-.+.+-.++.+-..
T Consensus 146 -ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~ 178 (209)
T COG4133 146 -LSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178 (209)
T ss_pred -cCCCCceeecCcccccCHHHHHHHHHHHHHHhc
Confidence 788888888854 455555555555433
No 383
>PLN03140 ABC transporter G family member; Provisional
Probab=99.46 E-value=2.1e-14 Score=160.56 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=96.2
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc--ccccceeecceeeccccccCCCcceee
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
..+++++++.+ +|+.++|+||||||||||+|+|+| ..+ +.+|+|.++|.+..... .+
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG------------~~~~g~~~G~I~inG~~~~~~~--------~~ 952 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG------------RKTGGYIEGDIRISGFPKKQET--------FA 952 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcC------------CCCCCcccceEEECCccCChHH--------hh
Confidence 46899999998 999999999999999999999999 333 47899999998753211 34
Q ss_pred EEEEEEEccCC----CeEEeCcccCCc-cc-cccCHh-------------HHhhhhHHHH-----HhcCccccccccccc
Q 020346 224 RHVSLLPLSGG----GYLADTPGFNQP-SL-LKVTKQ-------------SLAQTFPEIK-----EMLKANEPAKCSFNN 279 (327)
Q Consensus 224 ~~i~~v~q~~~----~~i~Dtpg~~~~-~l-~~~~~~-------------~l~~~~~~~~-----~~LSgGq~q~~~~~~ 279 (327)
+.++|++|.+. .++.|+..+... .+ ..+... ++.+...... +.|||||+||+.|+.
T Consensus 953 ~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~ 1032 (1470)
T PLN03140 953 RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAV 1032 (1470)
T ss_pred hheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHH
Confidence 56899999742 233343332110 00 001111 0111111111 349999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++ +.+|.++++||| .......++++++.+.
T Consensus 1033 aL-~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 1033 EL-VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 99 999999999965 3555566666666544
No 384
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=2.4e-14 Score=148.15 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=98.5
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
.++.|++++... +|+..||+||||||||||+|+|+|+... --..+|+|++||++...-. .++
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~---------~~~~~G~ilvNG~~~~~~~--------~~~ 104 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNG---------GLKLSGEILLNGRPRDSRS--------FRK 104 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccC---------CCcceEEEEECCccCchhh--------hhh
Confidence 367889999887 9999999999999999999999995310 0257999999995543222 677
Q ss_pred EEEEEEccCC----CeEEeCcccCCcc-c-cccCHhHHhhhhHHHH------------------HhcCcccccccccccc
Q 020346 225 HVSLLPLSGG----GYLADTPGFNQPS-L-LKVTKQSLAQTFPEIK------------------EMLKANEPAKCSFNNC 280 (327)
Q Consensus 225 ~i~~v~q~~~----~~i~Dtpg~~~~~-l-~~~~~~~l~~~~~~~~------------------~~LSgGq~q~~~~~~~ 280 (327)
..+|+.|++- .++.+|.-+.... + ..+..++.....+++. +-+||||++|+.|+..
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 8999999752 2333332222110 1 1112222222222221 2389999999999988
Q ss_pred ccccCCceEEcccHH------HHHHHHHHHHHHHHhHH
Q 020346 281 LHLGEPGCVVKGDWE------RYQYYFQLLDEIRIREE 312 (327)
Q Consensus 281 ~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~~~ 312 (327)
+ +++|.+++.|||. --....++|+++...++
T Consensus 185 l-l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~gr 221 (613)
T KOG0061|consen 185 L-LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGR 221 (613)
T ss_pred H-HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCC
Confidence 8 9999999999874 33333456666655544
No 385
>PTZ00243 ABC transporter; Provisional
Probab=99.41 E-value=5.2e-14 Score=158.63 Aligned_cols=121 Identities=23% Similarity=0.322 Sum_probs=86.5
Q ss_pred CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
+.++.+++++++.+ +|+.++|+|+||||||||+++|+| +++|++|+|+++
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G------------~~~~~~G~i~~~----------------- 720 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------QFEISEGRVWAE----------------- 720 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEEC-----------------
Confidence 34566899999998 999999999999999999999999 889999998742
Q ss_pred eEEEEEEEccC---CCeEEeCcccCCccc-cc----cCHhHHhhhhHH-----------HHHhcCccccccccccccccc
Q 020346 223 TRHVSLLPLSG---GGYLADTPGFNQPSL-LK----VTKQSLAQTFPE-----------IKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 223 t~~i~~v~q~~---~~~i~Dtpg~~~~~l-~~----~~~~~l~~~~~~-----------~~~~LSgGq~q~~~~~~~~h~ 283 (327)
..++|+||.+ ++++.|+..+....- +. +....+...... -...|||||+||+++++++ +
T Consensus 721 -~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl-~ 798 (1560)
T PTZ00243 721 -RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAV-Y 798 (1560)
T ss_pred -CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHH-h
Confidence 2588999975 334455544432110 00 000011111111 1123999999999999999 9
Q ss_pred cCCceEEcccHH
Q 020346 284 GEPGCVVKGDWE 295 (327)
Q Consensus 284 ~ep~~~v~~~~~ 295 (327)
.+|+++|+|||.
T Consensus 799 ~~p~illLDEP~ 810 (1560)
T PTZ00243 799 ANRDVYLLDDPL 810 (1560)
T ss_pred cCCCEEEEcCcc
Confidence 999999999763
No 386
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.8e-14 Score=124.96 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=91.6
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee--eccccccCCCcc-eee
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR--VGEVSTKSGRGK-HTT 223 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~--v~~~s~~~~~g~-~tt 223 (327)
++++++++.+ .|+++++=||||+|||||+++|-+ -|.|++|+|++.-.. +.-....+..-- -.+
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYa------------NY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr 92 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA------------NYLPDEGQILVRHEGEWVDLVTAEPREVLEVRR 92 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh------------ccCCCCceEEEEeCcchhhhhccChHHHHHHHH
Confidence 5788999998 899999999999999999999999 899999999985431 111111110000 023
Q ss_pred EEEEEEEccCCCeEEeCcccC------Cccc-----------------cccC-HhHHhhhhHHHHHhcCccccccccccc
Q 020346 224 RHVSLLPLSGGGYLADTPGFN------QPSL-----------------LKVT-KQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 224 ~~i~~v~q~~~~~i~Dtpg~~------~~~l-----------------~~~~-~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
+-++|+.|.- .-.|.+. ++.+ ..+. .+.++...|.. .||||+||+.+++
T Consensus 93 ~TiGyVSQFL----RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaT---FSGGEqQRVNIaR 165 (235)
T COG4778 93 TTIGYVSQFL----RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPAT---FSGGEQQRVNIAR 165 (235)
T ss_pred hhhHHHHHHH----HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcc---cCCchheehhhhh
Confidence 4477887742 1112211 1111 0010 12344444433 8999999999999
Q ss_pred cccccCCceEEcccHH------HHHHHHHHHHHHHHhH
Q 020346 280 CLHLGEPGCVVKGDWE------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~~~~ 311 (327)
.+ +.+-.++++|+|. ..+-..+|+.|-+.++
T Consensus 166 gf-ivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~G 202 (235)
T COG4778 166 GF-IVDYPILLLDEPTASLDATNRAVVVELIREAKARG 202 (235)
T ss_pred hh-hccCceEEecCCcccccccchHHHHHHHHHHHhcC
Confidence 88 6666677777653 5566667777765543
No 387
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.39 E-value=2e-13 Score=122.18 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc---------cccceeecceeeccccccCCCcce
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---------ILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p---------~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
++++.+ +| +++|+||||+|||||+++|.+ +..| ..|++.++|++.....
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRW------------VLGEQSAKSLRGEKMSDVIFAGSETRKPA-------- 73 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHH------------HhccccchhhcccCHHHHhccCCCCCCCC--------
Confidence 445555 56 999999999999999999998 4433 3456777776543211
Q ss_pred eeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCcccccccccccccc---ccCCceEEcccH----
Q 020346 222 TTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH---LGEPGCVVKGDW---- 294 (327)
Q Consensus 222 tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h---~~ep~~~v~~~~---- 294 (327)
.+..+++++|+++.+....+ .....+.++..+.... ....||+||+||++++.++. ..+|.++++|+|
T Consensus 74 ~~~~v~~vfq~~~~~~~~~~--~~~~~~~l~~~~~~~~---~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 74 NFAEVTLTFDNSDGRYSIIS--QGDVSEIIEAPGKKVQ---RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred ceEEEEEEEEcCCCceeEEe--hhhHHHHHhCCCcccc---chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 35779999998754411000 0000000111111122 23349999999999998873 257799999865
Q ss_pred --HHHHHHHHHHHHHH
Q 020346 295 --ERYQYYFQLLDEIR 308 (327)
Q Consensus 295 --~r~~~~~~ll~e~~ 308 (327)
...+.+..+++++.
T Consensus 149 D~~~~~~l~~~l~~~~ 164 (197)
T cd03278 149 DDANVERFARLLKEFS 164 (197)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 45556666666653
No 388
>PLN03073 ABC transporter F family; Provisional
Probab=99.37 E-value=4.3e-14 Score=148.59 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=54.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+.++.+.++|++..+++++++.+ +|++++|||+||||||||+++|+|... .-.|++|+|.+.++.
T Consensus 178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~---------~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI---------DGIPKNCQILHVEQE 243 (718)
T ss_pred EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---------CCCCCCCEEEEEecc
Confidence 55678899998888999999998 899999999999999999999999320 015889999876664
No 389
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.36 E-value=2.4e-12 Score=123.95 Aligned_cols=149 Identities=29% Similarity=0.381 Sum_probs=108.3
Q ss_pred ccccccccEEEEEeecCCCCC-ChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchh-
Q 020346 71 DPPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL- 148 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~-~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~- 148 (327)
+..+..+|+++.|.++..|.- ....+++.+.++.. +++.++||||+||++.+..++|..+++.-+-.+.+.......
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~g-nKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHG-NKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccC-CceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 357999999999999999954 45578998765543 499999999999999999999999998754444333221111
Q ss_pred ------------hHHHHHhhc----C------CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 149 ------------GLDSLLQRL----R------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 149 ------------~l~~l~~~l----~------g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
+-+.+--.+ . --+++|||-+++||||+||.|....
T Consensus 220 ~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k----------------------- 276 (435)
T KOG2484|consen 220 SNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRK----------------------- 276 (435)
T ss_pred ccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhc-----------------------
Confidence 112221112 1 1379999999999999999998732
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCCeEEeCcccCCcccc
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~ 249 (327)
+-.+...+| .|+.+..+.++.+..++|+||+.....+
T Consensus 277 --~C~vg~~pG----vT~smqeV~Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 277 --ACNVGNVPG----VTRSMQEVKLDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred --cccCCCCcc----chhhhhheeccCCceeccCCceeecCCC
Confidence 222333334 8888999999999999999998765443
No 390
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.35 E-value=6e-12 Score=123.52 Aligned_cols=166 Identities=27% Similarity=0.375 Sum_probs=112.8
Q ss_pred cccccccccccccccEEEEEeecCCCCCCh--HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-cee
Q 020346 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEP--FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPL 140 (327)
Q Consensus 64 ~R~~~l~r~~~anvD~lliv~~~~~p~~~~--~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~ 140 (327)
.+.......++..+|++++|++... .+++ ..+.++| +..++|+++|+||+|-...+. ....|.++|+ +.+
T Consensus 71 ~~i~~Qa~~Ai~eADvilfvVD~~~-Git~~D~~ia~~L---r~~~kpviLvvNK~D~~~~e~---~~~efyslG~g~~~ 143 (444)
T COG1160 71 ELIREQALIAIEEADVILFVVDGRE-GITPADEEIAKIL---RRSKKPVILVVNKIDNLKAEE---LAYEFYSLGFGEPV 143 (444)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHH---HhcCCCEEEEEEcccCchhhh---hHHHHHhcCCCCce
Confidence 3334444557899999999999985 3333 3455655 356799999999999864332 2456778898 789
Q ss_pred eccCcchhhHHHHHhhc------------CC----CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee
Q 020346 141 FCSVESKLGLDSLLQRL------------RD----QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~l------------~g----~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (327)
.+|+.++.++.+|...+ .+ -.+||||.|++|||||+|+|+|+.+.
T Consensus 144 ~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~------------------- 204 (444)
T COG1160 144 PISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERV------------------- 204 (444)
T ss_pred EeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceE-------------------
Confidence 99999888877665442 12 47999999999999999999995532
Q ss_pred cceeeccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCcc--ccccCHhHHhhhhHHHHH
Q 020346 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPS--LLKVTKQSLAQTFPEIKE 265 (327)
Q Consensus 205 ~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~--l~~~~~~~l~~~~~~~~~ 265 (327)
=++..+| ||+..-..+... ...++||.|++... .+.++...+..+.+.+..
T Consensus 205 ------Iv~~~aG----TTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~ 260 (444)
T COG1160 205 ------IVSDIAG----TTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIER 260 (444)
T ss_pred ------EecCCCC----ccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhh
Confidence 1222234 677666565553 34789999999754 223344444555555433
No 391
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.35 E-value=3.5e-13 Score=147.52 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=96.1
Q ss_pred CCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
.++...++|.. .+.+++|++.+ +|+.+||+|+.||||||||.+|+| ..+..+|++.++|.
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLG------------Em~~~sG~v~v~gs---- 583 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILG------------EMPKLSGSVAVNGS---- 583 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhc------------CcccccceEEEcCe----
Confidence 34555666653 34899999998 899999999999999999999999 67888998876553
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccc-----cCHhHHhh---hhH-----HHH---HhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLK-----VTKQSLAQ---TFP-----EIK---EMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~-----~~~~~l~~---~~~-----~~~---~~LSgGq~ 272 (327)
++|+||.+ ++++.|+..|..+.-+. ++.-.+.. .+| ++- -.|||||+
T Consensus 584 --------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 584 --------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred --------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 78888876 78899999988654211 00001111 111 111 12999999
Q ss_pred ccccccccccccCCceEEcccHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
||+++|+|+ ..+.++.++|||-
T Consensus 650 qRIsLARAV-Y~~adIYLLDDpl 671 (1381)
T KOG0054|consen 650 QRISLARAV-YQDADIYLLDDPL 671 (1381)
T ss_pred HHHHHHHHH-hccCCEEEEcCcc
Confidence 999999999 9999999999873
No 392
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.30 E-value=2.3e-12 Score=138.59 Aligned_cols=157 Identities=12% Similarity=0.165 Sum_probs=104.1
Q ss_pred ceeeccCcchh-hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
+.+..-|+... +++++++.+ +|++.++.|+|||||||++|+|.| ..+|++|+++++|.++..-...
T Consensus 568 ~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG------------~~~~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 568 NNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTG------------ETKPTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhC------------CccCCcceEEEecCccccccch
Confidence 34455565554 889999998 899999999999999999999999 8899999999998887653322
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccC---CccccccCHhHHhh-------------hhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFN---QPSLLKVTKQSLAQ-------------TFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~---~~~l~~~~~~~l~~-------------~~~~~~~~LSgGq~q~~~~~~ 279 (327)
.. ..+++||.||.+...-.-|..-. -..+..+...++.. ........+|||+++|+.++-
T Consensus 636 ~~----~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 636 QQ----VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAI 711 (885)
T ss_pred hh----hhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHH
Confidence 11 56789999997422111110000 00011111111111 111113459999999999998
Q ss_pred cccccCCceEEccc------HHHHHHHHHHHHHHHHhH
Q 020346 280 CLHLGEPGCVVKGD------WERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 280 ~~h~~ep~~~v~~~------~~r~~~~~~ll~e~~~~~ 311 (327)
++ ++.|.++++|+ |.-....-.++.++++.+
T Consensus 712 al-ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 712 AL-IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred HH-hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 88 99999999985 443344445666665543
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.1e-12 Score=125.73 Aligned_cols=129 Identities=25% Similarity=0.284 Sum_probs=80.4
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
+.+..++|-+ -..+++||||||+|||||+++|.| -+.|+.|+.. +|.+-++
T Consensus 601 pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~G------------kl~P~~GE~R----------------KnhrL~i 652 (807)
T KOG0066|consen 601 PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG------------KLDPNDGELR----------------KNHRLRI 652 (807)
T ss_pred chhhcccccccccceeEEECCCCccHHHHHHHHhc------------CCCCCcchhh----------------ccceeee
Confidence 3344444443 346899999999999999999999 6678888632 2367789
Q ss_pred EEEEccCC--CeEEeCcc------cCCcc------ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc
Q 020346 227 SLLPLSGG--GYLADTPG------FNQPS------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (327)
Q Consensus 227 ~~v~q~~~--~~i~Dtpg------~~~~~------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~ 292 (327)
+++-|..+ +...+||. |..+. +..+.+...+++.. ...|||||+.|++|+... +++|+++|+|
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTik--ikdLSGGQKaRValaeLa-l~~PDvlILD 729 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIK--IKDLSGGQKARVALAELA-LGGPDVLILD 729 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEe--eeecCCcchHHHHHHHHh-cCCCCEEEec
Confidence 98887542 23334443 21111 11111111111111 223999999999999765 7999999999
Q ss_pred cHH---HHHHHHHHHHHH
Q 020346 293 DWE---RYQYYFQLLDEI 307 (327)
Q Consensus 293 ~~~---r~~~~~~ll~e~ 307 (327)
+|. .+++.-++-+.+
T Consensus 730 EPTNNLDIESIDALaEAI 747 (807)
T KOG0066|consen 730 EPTNNLDIESIDALAEAI 747 (807)
T ss_pred CCCCCcchhhHHHHHHHH
Confidence 764 444444444444
No 394
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.28 E-value=1.3e-12 Score=133.03 Aligned_cols=143 Identities=27% Similarity=0.310 Sum_probs=95.0
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++++.+.-.. ..-++++++.+ +|+.+.|.|+||||||||+++|+| +++-.+|+|.+-
T Consensus 393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG------------LWP~g~G~I~~P------- 453 (604)
T COG4178 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG------------LWPWGSGRISMP------- 453 (604)
T ss_pred eEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhc------------cCccCCCceecC-------
Confidence 445555555443 45678888887 899999999999999999999999 999999987542
Q ss_pred cccCCCcceeeEEEEEEEccC---CCeEEeCcc-------cCCc----cccccCHhHHhhhhHHH---HHhcCccccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSG---GGYLADTPG-------FNQP----SLLKVTKQSLAQTFPEI---KEMLKANEPAKC 275 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg-------~~~~----~l~~~~~~~l~~~~~~~---~~~LSgGq~q~~ 275 (327)
. ...+-|+||.+ .+++.|-.. +.+. .+..+..+++...+.+. ...||+||+||+
T Consensus 454 -~--------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRl 524 (604)
T COG4178 454 -A--------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRL 524 (604)
T ss_pred -C--------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHH
Confidence 0 11244667754 223322111 2222 13334444444444332 234999999999
Q ss_pred cccccccccCCceEEcc------cHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKG------DWERYQYYFQLLDE 306 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~------~~~r~~~~~~ll~e 306 (327)
+||+.+ ++.|+.+++| |++-.....+++++
T Consensus 525 afARil-L~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 525 AFARLL-LHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHHHHH-HcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 999999 9999999998 34444444444444
No 395
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.25 E-value=1.4e-11 Score=118.54 Aligned_cols=146 Identities=25% Similarity=0.348 Sum_probs=105.2
Q ss_pred cccccccEEEEEeecCCC-CCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhh----cCCc-eeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQP-KLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT----WGYE-PLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p-~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~----~~~~-~~~~s~~ 145 (327)
..+-..|+++.|.++..| ......+++||.. ++..+..+.||||+||++......|...+.. +.|. .+.-+|+
T Consensus 209 KViDSSDVvvqVlDARDPmGTrc~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfG 287 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFG 287 (572)
T ss_pred HhhcccceeEEeeeccCCcccccHHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccc
Confidence 367899999999999998 4567789999853 4567789999999999999999999876654 3332 2444566
Q ss_pred chhhHH---HHHhhc---CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 146 SKLGLD---SLLQRL---RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 146 ~~~~l~---~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
....+. .+.-.- +--.++|||-|++||||+||.|... .+-.+.+-+|
T Consensus 288 KgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~K-------------------------kVCkvAPIpG-- 340 (572)
T KOG2423|consen 288 KGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKK-------------------------KVCKVAPIPG-- 340 (572)
T ss_pred hhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhc-------------------------ccccccCCCC--
Confidence 554333 332221 3457999999999999999999983 3444443344
Q ss_pred ceeeEEEEEEEccCCCeEEeCcccCCcc
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~~~~~ 247 (327)
-|+--+|+.+....++||+||+..+.
T Consensus 341 --ETKVWQYItLmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 341 --ETKVWQYITLMKRIFLIDCPGVVYPS 366 (572)
T ss_pred --cchHHHHHHHHhceeEecCCCccCCC
Confidence 45545566666677999999987554
No 396
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.24 E-value=5.3e-12 Score=115.71 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=27.9
Q ss_pred cCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.+..+++++ .+++++|+||||+|||||+++|.+
T Consensus 11 sy~~~~~~~~~----~~~~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 11 SYKDQTVIEPF----SPKHNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred CcccCcccccC----CCCcEEEECCCCCCHHHHHHHHHH
Confidence 45555555554 478999999999999999999983
No 397
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.22 E-value=3.2e-12 Score=111.48 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=89.0
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEE
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~ 230 (327)
.++..+ .|+++=+|||||||||||+-.++| ..|.+|+|.++|+++...+..+ ..++.+|+.
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAG-------------m~~~sGsi~~~G~~l~~~~~~e-----LArhRAYLs 78 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG-------------MTSGSGSIQFAGQPLEAWSATE-----LARHRAYLS 78 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhC-------------CCCCCceEEECCcchhHHhHhH-----HHHHHHHHh
Confidence 344444 799999999999999999999999 3588999999999998877654 556677777
Q ss_pred ccCCCeEEeCcccCCccccccC-----------------HhHHhhhhHHHHHhcCccccccccccc-ccccc---CC--c
Q 020346 231 LSGGGYLADTPGFNQPSLLKVT-----------------KQSLAQTFPEIKEMLKANEPAKCSFNN-CLHLG---EP--G 287 (327)
Q Consensus 231 q~~~~~i~Dtpg~~~~~l~~~~-----------------~~~l~~~~~~~~~~LSgGq~q~~~~~~-~~h~~---ep--~ 287 (327)
|. .+|-|..+....+. +-.+.+..+.....|||||-||++++. |+.+. +| .
T Consensus 79 Qq------q~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~ 152 (248)
T COG4138 79 QQ------QTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQ 152 (248)
T ss_pred hc------cCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccce
Confidence 75 34444333221111 112333444445569999999999986 55332 23 3
Q ss_pred eEEcccHH------HHHHHHHHHHHHHHhH
Q 020346 288 CVVKGDWE------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 288 ~~v~~~~~------r~~~~~~ll~e~~~~~ 311 (327)
+++.|+|- .-..+-+++.++...+
T Consensus 153 LLllDEP~~~LDvAQ~~aLdrll~~~c~~G 182 (248)
T COG4138 153 LLLLDEPMNSLDVAQQSALDRLLSALCQQG 182 (248)
T ss_pred eEEecCCCcchhHHHHHHHHHHHHHHHhCC
Confidence 45567552 3333345666665443
No 398
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.17 E-value=2.8e-11 Score=109.37 Aligned_cols=135 Identities=18% Similarity=0.227 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC--
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-- 235 (327)
+|++++|+|+||+|||||+++|.+. ++.+..+....+ .....+... .....++++++..+.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~-----------l~g~~~~~~~~~-~~~~~~~~~-----~~~~~v~~~f~~~~~~~ 89 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYA-----------LYGKTPRYGRQE-NLRSVFAPG-----EDTAEVSFTFQLGGKKY 89 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheee-----------EecCccccccch-hHHHHhcCC-----CccEEEEEEEEECCeEE
Confidence 4789999999999999999999951 444444433322 111111111 145668888876533
Q ss_pred eEEeCcccCCccccc---cCHhHHhhhhHHHHHhcCccccccccccccccc---------cCCceEEcccH------HHH
Q 020346 236 YLADTPGFNQPSLLK---VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL---------GEPGCVVKGDW------ERY 297 (327)
Q Consensus 236 ~i~Dtpg~~~~~l~~---~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~---------~ep~~~v~~~~------~r~ 297 (327)
.+...+++....... +....+......-...||+||+||+++++++-. .+|+++++|+| .-.
T Consensus 90 ~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~ 169 (213)
T cd03279 90 RVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEAL 169 (213)
T ss_pred EEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHH
Confidence 223333332211100 000111111111123499999999999987721 36789999855 344
Q ss_pred HHHHHHHHHHHH
Q 020346 298 QYYFQLLDEIRI 309 (327)
Q Consensus 298 ~~~~~ll~e~~~ 309 (327)
+...++++++..
T Consensus 170 ~~~~~~l~~~~~ 181 (213)
T cd03279 170 EAVATALELIRT 181 (213)
T ss_pred HHHHHHHHHHHh
Confidence 455566666644
No 399
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.15 E-value=1.6e-12 Score=118.64 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=30.5
Q ss_pred ccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHH
Q 020346 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLI 176 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLl 176 (327)
+...+..+++++++.+ +|++++|+|+||||||||+
T Consensus 3 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred eccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 3344567899999998 9999999999999999996
No 400
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.15 E-value=1.8e-11 Score=122.74 Aligned_cols=131 Identities=21% Similarity=0.298 Sum_probs=86.7
Q ss_pred CceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
++.++++..+ ...++++++.+ .|+.+.|.||||||||||++.|.| +|+-++|++......
T Consensus 436 ~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlgg------------LWp~~~G~l~k~~~~----- 498 (659)
T KOG0060|consen 436 FEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGG------------LWPSTGGKLTKPTDG----- 498 (659)
T ss_pred eeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhc------------ccccCCCeEEecccC-----
Confidence 4445555544 34567799998 899999999999999999999999 999999987632110
Q ss_pred ccCCCcceeeEEEEEEEccC---CCeEEeCcccC------Cc----------cccccCHhHHhhhhH--------HHHHh
Q 020346 214 TKSGRGKHTTRHVSLLPLSG---GGYLADTPGFN------QP----------SLLKVTKQSLAQTFP--------EIKEM 266 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~------~~----------~l~~~~~~~l~~~~~--------~~~~~ 266 (327)
-.+.+-++||.| -+++.|-.-+. .. .++++.+.++.+... +-...
T Consensus 499 --------~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 --------GPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred --------CCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 224577888876 22222211111 10 122222222222111 11234
Q ss_pred cCccccccccccccccccCCceEEccc
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGD 293 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~ 293 (327)
||+||+||++||+.. .++|..+++|+
T Consensus 571 LS~GEqQRLa~ARLf-y~kPk~AiLDE 596 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLF-YHKPKFAILDE 596 (659)
T ss_pred cCHHHHHHHHHHHHH-hcCCceEEeec
Confidence 999999999999988 99999999995
No 401
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.14 E-value=6.5e-10 Score=110.56 Aligned_cols=105 Identities=29% Similarity=0.382 Sum_probs=73.9
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCc-eeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE-PLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~ 149 (327)
..+.++|.+++|+++..+.... ..+.++| ...++|+++|+||+|+.+.+.. ...+..+++. .+.+|+.++.+
T Consensus 76 ~~~~~ad~il~vvd~~~~~~~~~~~~~~~l---~~~~~piilv~NK~D~~~~~~~---~~~~~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 76 LAIEEADVILFVVDGRAGLTPADEEIAKIL---RKSNKPVILVVNKVDGPDEEAD---AYEFYSLGLGEPYPISAEHGRG 149 (435)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCcEEEEEECccCccchhh---HHHHHhcCCCCCEEEEeeCCCC
Confidence 3568999999999987643222 2344444 3458999999999997653211 1233456764 78888887777
Q ss_pred HHHHHhhc-C-------------CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 150 LDSLLQRL-R-------------DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 150 l~~l~~~l-~-------------g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++++-..+ . .-.++|+|.+|+|||||+|.|++.
T Consensus 150 v~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~ 196 (435)
T PRK00093 150 IGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGE 196 (435)
T ss_pred HHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 66654443 1 247999999999999999999984
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.11 E-value=1.7e-11 Score=120.06 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEc----cC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL----SG 233 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q----~~ 233 (327)
.|++++++||||.||||++++|+| ..+|++|+ . ....++|=|| +.
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG------------~ikPdeg~--~-----------------~~~~vSyKPQyI~~~~ 414 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAG------------VIKPDEGS--E-----------------EDLKVSYKPQYISPDY 414 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhc------------cccCCCCC--C-----------------ccceEeecceeecCCC
Confidence 579999999999999999999999 88999986 1 1123344444 22
Q ss_pred CCeEEeC-----cc-cCCcc--ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-------HHHH
Q 020346 234 GGYLADT-----PG-FNQPS--LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-------ERYQ 298 (327)
Q Consensus 234 ~~~i~Dt-----pg-~~~~~--l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~-------~r~~ 298 (327)
.+++.+. +. +.... .+-+..-.+...++.-...|||||.||++++-|+ ..|.++.|+|+| ||+.
T Consensus 415 ~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L-~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 415 DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAAL-SREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred CCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHh-ccccCEEEecCchhhccHHHHHH
Confidence 2221110 00 11111 1112222334444444556999999999999999 999999999976 4666
Q ss_pred HHHHHHHHHHHhHHH
Q 020346 299 YYFQLLDEIRIREEF 313 (327)
Q Consensus 299 ~~~~ll~e~~~~~~~ 313 (327)
..+.+.+=+..++++
T Consensus 494 vakvIRR~~e~~~kt 508 (591)
T COG1245 494 VAKVIRRFIENNEKT 508 (591)
T ss_pred HHHHHHHHHhhcCce
Confidence 665555545444443
No 403
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.10 E-value=9.7e-10 Score=108.95 Aligned_cols=105 Identities=26% Similarity=0.454 Sum_probs=75.7
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (327)
..+.++|.+++|+++..+.... ..+.++| +..++|+++|.||+|+.+.+.. ...+..+++ +.+.+|+.+..+
T Consensus 74 ~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~~~piilVvNK~D~~~~~~~---~~~~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 74 IAIEEADVILFVVDGREGLTPEDEEIAKWL---RKSGKPVILVANKIDGKKEDAV---AAEFYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HHhCCCEEEEEECccCCccccc---HHHHHhcCCCCeEEEeCCcCCC
Confidence 3568999999999987643221 2344554 4468999999999998764422 123456787 688999988777
Q ss_pred HHHHHhhc----C--C---------CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 150 LDSLLQRL----R--D---------QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 150 l~~l~~~l----~--g---------~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++++...+ + . -.++++|.+|+|||||+|.|++.
T Consensus 148 v~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~ 195 (429)
T TIGR03594 148 IGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGE 195 (429)
T ss_pred hHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCC
Confidence 76654432 1 1 26999999999999999999984
No 404
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.09 E-value=4.1e-10 Score=105.85 Aligned_cols=149 Identities=29% Similarity=0.351 Sum_probs=92.8
Q ss_pred ccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceee-ccCcch---
Q 020346 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF-CSVESK--- 147 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--- 147 (327)
...++|.++-|-+++.|..+-. .+++++ ..++.++|+||+||++..+.......++.-.+.... .+....
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred hcccccEEEEeeccccCCccccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhh
Confidence 3579999999999999976644 456666 378999999999999976555555544432222111 111111
Q ss_pred ---h---hHHHHHhhc--------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 148 ---L---GLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 148 ---~---~l~~l~~~l--------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
. .+..++..+ .+-.+.|||.||+|||||||++...... - .....+.
T Consensus 118 ~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lr-----------k---------~k~a~vG 177 (335)
T KOG2485|consen 118 QVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLR-----------K---------KKAARVG 177 (335)
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhh-----------h---------ccceecc
Confidence 1 111222221 2347899999999999999999873210 0 1112223
Q ss_pred ccCCCcceeeEEEEEE---EccCCCeEEeCcccCCccccc
Q 020346 214 TKSGRGKHTTRHVSLL---PLSGGGYLADTPGFNQPSLLK 250 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v---~q~~~~~i~Dtpg~~~~~l~~ 250 (327)
..+| .|+.++-. .-.+..|++||||+..+...+
T Consensus 178 ~~pG----VT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 178 AEPG----VTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred CCCC----ceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 3333 77777642 223467999999999876543
No 405
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=99.09 E-value=2.8e-10 Score=84.28 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=54.1
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILD 71 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r 71 (327)
|.|+|.....+.|.+.. +++..+.|.++|++++....++|||||.++..+ ++.++|++++||+|.|.|
T Consensus 1 ~~grVv~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~--~~~~~I~~vl~R~s~l~R 68 (68)
T cd04466 1 MEGLIIKAIGGFYYVET-EDGKIYECRLRGKFRKDKNPPAVGDRVEFEPED--DGEGVIEEILPRKNLLIR 68 (68)
T ss_pred CCEEEEEEECCEEEEEe-CCCeEEEEEEccccccCCCCCCCCcEEEEEECC--CCcEEEEEEeccceEEEC
Confidence 67899999955555553 346789999999987656789999999997532 456799999999999865
No 406
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.07 E-value=1.1e-09 Score=110.51 Aligned_cols=104 Identities=30% Similarity=0.394 Sum_probs=72.1
Q ss_pred ccccccEEEEEeecCCCCCC-hHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~-~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l 150 (327)
.+.++|.+++|+++..+... ...+.+++ ...++|+++|.||+|+...+.. ...+..+++ ..+.+|+.++.++
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~~~i~~~l---~~~~~piilV~NK~Dl~~~~~~---~~~~~~~g~~~~~~iSA~~g~gi 187 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATDEAVARVL---RRSGKPVILAANKVDDERGEAD---AAALWSLGLGEPHPVSALHGRGV 187 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCCccchh---hHHHHhcCCCCeEEEEcCCCCCc
Confidence 46799999999999864322 22233333 4568999999999999643211 122234455 4578888887777
Q ss_pred HHHHhhc-----C----------CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 151 DSLLQRL-----R----------DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 151 ~~l~~~l-----~----------g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++...+ + ...++|+|.+|||||||+|.|++.
T Consensus 188 ~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~ 234 (472)
T PRK03003 188 GDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE 234 (472)
T ss_pred HHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 6654332 1 137999999999999999999984
No 407
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.06 E-value=1.2e-10 Score=126.01 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=102.0
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
++++.|++++=.+ +|..+||+|+||||||||||.|+|+. .-=..+|+|+++|.+..+.+ ..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~----------t~G~I~Gdi~i~G~p~~q~t--------F~ 863 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK----------TGGYIEGDILISGFPKDQET--------FA 863 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc----------ccceEEeEEEECCeeCchhh--------hc
Confidence 4567788887776 89999999999999999999999964 22356899999999877532 66
Q ss_pred EEEEEEEccC----CCeEEeCcccCCccc--cccCHhHHhhhhHH-------------HHHh----cCcccccccccccc
Q 020346 224 RHVSLLPLSG----GGYLADTPGFNQPSL--LKVTKQSLAQTFPE-------------IKEM----LKANEPAKCSFNNC 280 (327)
Q Consensus 224 ~~i~~v~q~~----~~~i~Dtpg~~~~~l--~~~~~~~l~~~~~~-------------~~~~----LSgGq~q~~~~~~~ 280 (327)
+.+||+.|.+ ..++.++..++.... ..++.++..+..++ +... ||..|++|+.++--
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 7899999975 224444433332110 12222222222222 2222 89999999999988
Q ss_pred ccccCCceEE-cccH------HHHHHHHHHHHHHHHhHH
Q 020346 281 LHLGEPGCVV-KGDW------ERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 281 ~h~~ep~~~v-~~~~------~r~~~~~~ll~e~~~~~~ 312 (327)
+ +..|+.+| +|+| +--.+..++++.+.+.++
T Consensus 944 L-vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGq 981 (1391)
T KOG0065|consen 944 L-VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQ 981 (1391)
T ss_pred E-ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 8 88996665 8866 455666677777766554
No 408
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.04 E-value=5.2e-10 Score=100.65 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=75.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHc----CCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC-C
Q 020346 160 QTTVIVGPSGVGKSSLINALR----SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG-G 234 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~----g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~-~ 234 (327)
.+++|+|+||+|||||+++|. | ...|+.|.+..+...+.. . . ....++++++.. +
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G------------~~~~~~~~~~~~~~~i~~-~--~-----~~~~v~~~f~~~~~ 82 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTG------------ELPPNSKGGAHDPKLIRE-G--E-----VRAQVKLAFENANG 82 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC------------CCCcccccccchHHHHhC-C--C-----CcEEEEEEEEeCCC
Confidence 399999999999999999994 7 556777765411111111 1 1 345677777764 2
Q ss_pred C--eEEeCcccCCcccccc---CHhHHhhhhHHHHHhcCcccccc------ccccccccccCCceEEcccH------HHH
Q 020346 235 G--YLADTPGFNQPSLLKV---TKQSLAQTFPEIKEMLKANEPAK------CSFNNCLHLGEPGCVVKGDW------ERY 297 (327)
Q Consensus 235 ~--~i~Dtpg~~~~~l~~~---~~~~l~~~~~~~~~~LSgGq~q~------~~~~~~~h~~ep~~~v~~~~------~r~ 297 (327)
- .+.... ...+++ ..++...........||+||+|+ +++++++ ...|++++.|+| ...
T Consensus 83 ~~~~v~r~~----~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al-~~~p~illlDEP~~~LD~~~~ 157 (204)
T cd03240 83 KKYTITRSL----AILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETF-GSNCGILALDEPTTNLDEENI 157 (204)
T ss_pred CEEEEEEEh----hHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHh-ccCCCEEEEcCCccccCHHHH
Confidence 1 111111 111111 11222222222334599999996 6777777 889999999965 344
Q ss_pred H-HHHHHHHHHHH
Q 020346 298 Q-YYFQLLDEIRI 309 (327)
Q Consensus 298 ~-~~~~ll~e~~~ 309 (327)
+ .+.+++.++..
T Consensus 158 ~~~l~~~l~~~~~ 170 (204)
T cd03240 158 EESLAEIIEERKS 170 (204)
T ss_pred HHHHHHHHHHHHh
Confidence 5 66677776654
No 409
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.03 E-value=1.3e-10 Score=115.80 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=75.7
Q ss_pred eeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC
Q 020346 139 PLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (327)
Q Consensus 139 ~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~ 216 (327)
.+.|.|.++ ..+++++|-+ .+..+++||||||||||||+++.| ...|+.|.+.-+
T Consensus 394 nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~g------------dl~p~~G~vs~~----------- 450 (614)
T KOG0927|consen 394 NVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITG------------DLQPTIGMVSRH----------- 450 (614)
T ss_pred ccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhh------------cccccccccccc-----------
Confidence 345555543 4667777776 788999999999999999999999 778888875421
Q ss_pred CCcceeeEEEEEEEccCCC-eEEeC-------cccCC-cc-------ccccCHhHHhhhhHHHHHhcCcccccccccccc
Q 020346 217 GRGKHTTRHVSLLPLSGGG-YLADT-------PGFNQ-PS-------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 217 ~~g~~tt~~i~~v~q~~~~-~i~Dt-------pg~~~-~~-------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~ 280 (327)
..-++.++.|.... .-.|- |.+.. .. +.......-.... -.+.||.||+.|+.|+..
T Consensus 451 -----~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~--p~~~LS~Gqr~rVlFa~l 523 (614)
T KOG0927|consen 451 -----SHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV--PMSQLSDGQRRRVLFARL 523 (614)
T ss_pred -----ccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc--chhhcccccchhHHHHHH
Confidence 22233334442100 00000 11110 00 0111111001111 134499999999999988
Q ss_pred ccccCCceEEcccH
Q 020346 281 LHLGEPGCVVKGDW 294 (327)
Q Consensus 281 ~h~~ep~~~v~~~~ 294 (327)
. +..|.++|+|+|
T Consensus 524 ~-~kqP~lLlLDEP 536 (614)
T KOG0927|consen 524 A-VKQPHLLLLDEP 536 (614)
T ss_pred H-hcCCcEEEecCC
Confidence 7 999999999965
No 410
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.00 E-value=8.3e-10 Score=102.11 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-ccceeecce-eeccccccCCCcceeeEEEEEEEccC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQ-RVGEVSTKSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~-~v~~~s~~~~~g~~tt~~i~~v~q~~ 233 (327)
....++|||+||||||||+.+|.+ ++.|+ .|++.+.+. ++-..+ +........+++++|++
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~------------ll~~~~~~~~r~~~~~~li~~~---~~~~~~~~~v~~~fq~~ 86 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICF------------VLGITNLSTVRASNLQDLIYKR---GQAGITKASVTIVFDNS 86 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH------------HhcccccccccccCHHHHhhcC---CCCCCcEEEEEEEEEcC
Confidence 467899999999999999999998 66665 457777665 321111 11112455788888864
No 411
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.99 E-value=2.4e-10 Score=113.63 Aligned_cols=115 Identities=21% Similarity=0.302 Sum_probs=78.7
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
++..+++.+ +|....|+||||||||||.+.|.| +|+...|... ++ ...++-
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILgg------------LWPvy~g~L~--------~P--------~~~~mF 548 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGG------------LWPVYNGLLS--------IP--------RPNNIF 548 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhc------------cCcccCCeee--------cC--------CCcceE
Confidence 456777777 899999999999999999999999 9988777533 11 334588
Q ss_pred EEEccC---CCeEEeCcccC------------Ccc----ccccCHhHHhh------hhHHHHHhcCcccccccccccccc
Q 020346 228 LLPLSG---GGYLADTPGFN------------QPS----LLKVTKQSLAQ------TFPEIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 228 ~v~q~~---~~~i~Dtpg~~------------~~~----l~~~~~~~l~~------~~~~~~~~LSgGq~q~~~~~~~~h 282 (327)
|+||.+ .+++.|-.-+. +.. +..+..+.+.+ ...+-...|||||+||+.+|+..
T Consensus 549 YIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~- 627 (728)
T KOG0064|consen 549 YIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF- 627 (728)
T ss_pred eccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH-
Confidence 899976 33444432222 111 11122222221 11222345999999999999988
Q ss_pred ccCCceEEcc
Q 020346 283 LGEPGCVVKG 292 (327)
Q Consensus 283 ~~ep~~~v~~ 292 (327)
.|.|..+|+|
T Consensus 628 yHrPkyalLD 637 (728)
T KOG0064|consen 628 YHRPKYALLD 637 (728)
T ss_pred hcCcchhhhh
Confidence 9999999988
No 412
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.97 E-value=4.4e-09 Score=111.10 Aligned_cols=104 Identities=27% Similarity=0.368 Sum_probs=72.6
Q ss_pred ccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l 150 (327)
.+.++|.+++|+++..+..... .+.++| +..++|+++|+||+|+...... ...+..+++ ..+.+|+.+..++
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~L---r~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~~g~GI 424 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRML---RRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAMHGRGV 424 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHH---HhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECCCCCCc
Confidence 4689999999999875422221 233333 4578999999999998654221 122333455 4677888888777
Q ss_pred HHHHhhc-----C----C--------CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 151 DSLLQRL-----R----D--------QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 151 ~~l~~~l-----~----g--------~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++...+ . . ..++|+|.+|||||||+|.|++.
T Consensus 425 ~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 425 GDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred hHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 6654432 1 1 37999999999999999999984
No 413
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.97 E-value=3.4e-10 Score=113.38 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=100.5
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
.+++++|.+ +|++++|.|--|+|+|-|+++|.| +.++.+|+|.++|+++.-.+.... ....++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG------------~~~~~~G~i~l~G~~v~~~sp~~A----i~~Gi~ 337 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFG------------ARPASSGEILLDGKPVRIRSPRDA----IKAGIA 337 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhC------------CCcCCCceEEECCEEccCCCHHHH----HHcCCE
Confidence 478899988 999999999999999999999999 778999999999999877664433 566789
Q ss_pred EEEccC--CCe-----EEeCcccC---Ccccc-ccCHhHHhhhhH--------------HHHHhcCcccccccccccccc
Q 020346 228 LLPLSG--GGY-----LADTPGFN---QPSLL-KVTKQSLAQTFP--------------EIKEMLKANEPAKCSFNNCLH 282 (327)
Q Consensus 228 ~v~q~~--~~~-----i~Dtpg~~---~~~l~-~~~~~~l~~~~~--------------~~~~~LSgGq~q~~~~~~~~h 282 (327)
|+|-+. .+. +.++..+. ..... -+.......... .....||||.||++.+++++
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL- 416 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWL- 416 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHH-
Confidence 998764 222 22222221 00000 011111111111 11234999999999999999
Q ss_pred ccCCceEEcccHH-------HHHHHHHHHHHHHHhH
Q 020346 283 LGEPGCVVKGDWE-------RYQYYFQLLDEIRIRE 311 (327)
Q Consensus 283 ~~ep~~~v~~~~~-------r~~~~~~ll~e~~~~~ 311 (327)
..+|.++++|+|. .+++| +++.++...+
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy-~li~~lA~~G 451 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIY-RLIRELAAEG 451 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHH-HHHHHHHHCC
Confidence 7799999999885 66666 5566665544
No 414
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.94 E-value=7.3e-10 Score=100.36 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=29.2
Q ss_pred cCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
+|+...+++++++ ++++|+|||||||||||++|.
T Consensus 13 ~~~~~~~l~~~~~----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 13 SYAGEQVIGPFHK----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred cCCCCeeeccCCC----CeEEEECCCCCCHHHHHHHHH
Confidence 5667777777765 789999999999999999987
No 415
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.85 E-value=8.4e-10 Score=103.11 Aligned_cols=34 Identities=35% Similarity=0.406 Sum_probs=29.8
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHH
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINAL 179 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L 179 (327)
+...|++++..+ .|..++|.|+||||||||++.+
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 345788888887 7999999999999999999865
No 416
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=98.79 E-value=1.3e-08 Score=74.84 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=44.6
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEE
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i 59 (327)
|+|+|++..+ |+|+|.. ++|..+.|.+||+|++.+..++|||+|.++....+++++.|
T Consensus 3 ~~G~Vi~~~~g~~~~V~~-~~g~~~~c~~rGklr~~~~~~~vGD~V~~~~~~~~~~~g~I 61 (64)
T cd04451 3 MEGVVTEALPNAMFRVEL-ENGHEVLAHISGKMRMNYIRILPGDRVKVELSPYDLTKGRI 61 (64)
T ss_pred EEEEEEEEeCCCEEEEEe-CCCCEEEEEECceeecCCcccCCCCEEEEEEeecCCCEEEE
Confidence 7899999996 5556654 57889999999999866678999999999953222345554
No 417
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.79 E-value=1.6e-08 Score=90.07 Aligned_cols=62 Identities=31% Similarity=0.472 Sum_probs=50.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
+--++++|.||||||||||+|.++ +.+...|..+| .|+.+-++...+...++
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~------------------------k~LArtSktPG----rTq~iNff~~~~~~~lV 75 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQ------------------------KNLARTSKTPG----RTQLINFFEVDDELRLV 75 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCC------------------------cceeecCCCCC----ccceeEEEEecCcEEEE
Confidence 456999999999999999999994 23556666677 78889888887778899
Q ss_pred eCcccCCccc
Q 020346 239 DTPGFNQPSL 248 (327)
Q Consensus 239 Dtpg~~~~~l 248 (327)
|.||+.-...
T Consensus 76 DlPGYGyAkv 85 (200)
T COG0218 76 DLPGYGYAKV 85 (200)
T ss_pred eCCCcccccC
Confidence 9999986443
No 418
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.78 E-value=2.4e-09 Score=86.75 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=49.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|+.++|+||||||||||+++|.. |++.++|.++...+... ..+..
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~~------------------G~i~~~g~di~~~~~~~-----~~~~~ 59 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELIK------------------RKHRLVGDDNVEIREDS-----KDELI 59 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhhC------------------CeEEEeeEeHHHhhhhh-----cCCEE
Confidence 4577888887 779999999999999999999863 78999999988776543 34456
Q ss_pred EEEEcc
Q 020346 227 SLLPLS 232 (327)
Q Consensus 227 ~~v~q~ 232 (327)
++.||.
T Consensus 60 ~~~~q~ 65 (107)
T cd00820 60 GRNPEL 65 (107)
T ss_pred EEechh
Confidence 666664
No 419
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=98.75 E-value=2e-08 Score=75.69 Aligned_cols=59 Identities=27% Similarity=0.281 Sum_probs=46.9
Q ss_pred CeeEEEecCCC-CceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEPS-RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|++..+| +|+|.. ++|..+.|.++|++++.+..+.|||+|.+++...++..|.|.
T Consensus 9 ~~G~Vi~~~~~~~y~V~~-~~g~~~~c~~~Gklr~~~i~i~vGD~V~ve~~~~~~~~g~Iv 68 (72)
T PRK00276 9 MEGTVVEALPNAMFRVEL-ENGHEVLAHISGKMRKNYIRILPGDKVTVELSPYDLTKGRIT 68 (72)
T ss_pred EEEEEEEEcCCCEEEEEe-CCCCEEEEEEccceeeCCcccCCCCEEEEEEcccCCCeEEEE
Confidence 68999999988 667753 578899999999999777889999999999533234456554
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.72 E-value=4.9e-09 Score=102.08 Aligned_cols=126 Identities=16% Similarity=0.271 Sum_probs=75.8
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|+.++|+|+||+|||||+++|+|... .-.+.-|+|++|.|-+ +.+.+ .
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~----~~~ee~y~p~sg~v~v---p~nt~-------------~ 456 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK----GRGEEKYRPDSGKVEV---PKNTV-------------S 456 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh----cccccccCCCCCceec---cccch-------------h
Confidence 3577888887 899999999999999999999999542 1223368899998764 22222 2
Q ss_pred EEEEcc-----CCCeE----EeCcccCCccccccCHhHHhh--hhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 227 SLLPLS-----GGGYL----ADTPGFNQPSLLKVTKQSLAQ--TFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 227 ~~v~q~-----~~~~i----~Dtpg~~~~~l~~~~~~~l~~--~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.++|-. .+.++ .+++|-.....+-++...+.+ .+-.-.+.||.||+.|.++|.|+ ...|++.+.|+.
T Consensus 457 a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkll-aerpn~~~iDEF 534 (593)
T COG2401 457 ALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLL-AERPNVLLIDEF 534 (593)
T ss_pred hccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHH-hcCCCcEEhhhh
Confidence 223322 11111 122222111111111111111 11111223999999999999999 889999998743
No 421
>CHL00010 infA translation initiation factor 1
Probab=98.71 E-value=3.2e-08 Score=75.81 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=47.0
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|+|+|++..+ |+|+|.. ++|..+.|.++|+||+.+..|+|||+|.+++...+...|.|.
T Consensus 9 ~~G~Vik~lg~~~y~V~~-~~g~~~~c~~rGklr~~~i~~~vGD~V~ve~~~~~~~~g~Ii 68 (78)
T CHL00010 9 MEGLVTESLPNGMFRVRL-DNGCQVLGYISGKIRRNSIRILPGDRVKVELSPYDLTKGRII 68 (78)
T ss_pred EEEEEEEEcCCCEEEEEe-CCCCEEEEEeccceecCCcccCCCCEEEEEEcccCCCeEEEE
Confidence 6899999995 7778754 478899999999999777889999999999543334456554
No 422
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=6e-09 Score=103.60 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=41.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+-...+..+|+.+..|.+-++++ .|..++++|+||+||||||++|+.
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 34467888999999999888887 899999999999999999999997
No 423
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.68 E-value=6.6e-09 Score=93.09 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=31.3
Q ss_pred HhcCcccccccccccccc---ccCCceEEcccHH------HHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLH---LGEPGCVVKGDWE------RYQYYFQLLDEI 307 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h---~~ep~~~v~~~~~------r~~~~~~ll~e~ 307 (327)
..||+||+|++.++.++- +.+|.++|+|+|. ....+.+++.++
T Consensus 108 ~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 108 KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence 349999999999998662 4899999999663 334444455554
No 424
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.68 E-value=1.6e-08 Score=94.88 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~D 239 (327)
..++|+|+||+|||||+++|+| ++.|++|+|+++|+++..+.... .....++++||.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~------------~~~~~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~------- 168 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR------------ILSTGISQLGLRGKKVGIVDERS----EIAGCVNGVPQH------- 168 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC------------ccCCCCceEEECCEEeecchhHH----HHHHHhcccccc-------
Confidence 6899999999999999999999 88999999999999987543111 133445677774
Q ss_pred CcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHHHHHHHHHHHHHHH
Q 020346 240 TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERYQYYFQLLDEIR 308 (327)
Q Consensus 240 tpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~r~~~~~~ll~e~~ 308 (327)
..+.+...+++..... . + ..++-..+|++++.|++.+.+.+.++++.+.
T Consensus 169 ~~~~r~~v~~~~~k~~---~---~--------------~~~i~~~~P~villDE~~~~e~~~~l~~~~~ 217 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAE---G---M--------------MMLIRSMSPDVIVVDEIGREEDVEALLEALH 217 (270)
T ss_pred cccccccccccchHHH---H---H--------------HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh
Confidence 2332222222211110 0 1 1111124899999998877777777776653
No 425
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.65 E-value=2.2e-08 Score=99.34 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=99.9
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee-ccccccCCCcceeeEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV-GEVSTKSGRGKHTTRH 225 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v-~~~s~~~~~g~~tt~~ 225 (327)
..++++||.+ .|++++|.|-+|-|-|-|+.+|+| +.+|.+|+|+++|.++ +..+.... +...
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisG------------lr~~~~G~I~l~G~~v~~~~~~~~~----r~~G 335 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG------------LRKPASGRILLNGKDVLGRLSPRER----RRLG 335 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhC------------CCccCCceEEECCEeccccCCHHHH----HhcC
Confidence 4588999998 899999999999999999999999 8888899999999997 43343322 5567
Q ss_pred EEEEEccC-------CCeEEeCcccCCcc-----cc-ccCHhHHhhhhHHH--------------HHhcCcccccccccc
Q 020346 226 VSLLPLSG-------GGYLADTPGFNQPS-----LL-KVTKQSLAQTFPEI--------------KEMLKANEPAKCSFN 278 (327)
Q Consensus 226 i~~v~q~~-------~~~i~Dtpg~~~~~-----l~-~~~~~~l~~~~~~~--------------~~~LSgGq~q~~~~~ 278 (327)
++++|.+. ++.+.++..+.... .. .+....+.....++ ...||||.+||+-++
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Ila 415 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILA 415 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhh
Confidence 88898874 12233332221110 00 11222222221222 234999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
+-+ ..+|+++|..+| .-.+..++.+-+.++.+
T Consensus 416 REl-~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G 453 (501)
T COG3845 416 REL-ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG 453 (501)
T ss_pred hhh-ccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC
Confidence 999 789999997654 35555666666655544
No 426
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.64 E-value=7.1e-09 Score=93.16 Aligned_cols=155 Identities=19% Similarity=0.263 Sum_probs=109.4
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
+--.+++.+++++ .|++-++||.||+|||-+.++|+|-... -+..|.....|++.+.-.++... +.+-..
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd--------nW~vTADR~Rf~~idLL~L~Pr~-RRk~ig 88 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD--------NWRVTADRMRFDDIDLLRLSPRE-RRKLVG 88 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc--------ceEEEhhhcccccchhhcCChHH-hhhhhc
Confidence 3445789999998 8999999999999999999999994321 56788889999999988887653 345566
Q ss_pred EEEEEEEccCCCeE----------EeC-ccc--CCc--------------cccccC---HhHHhhhhHHHHHhcCccccc
Q 020346 224 RHVSLLPLSGGGYL----------ADT-PGF--NQP--------------SLLKVT---KQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 224 ~~i~~v~q~~~~~i----------~Dt-pg~--~~~--------------~l~~~~---~~~l~~~~~~~~~~LSgGq~q 273 (327)
+.++|++|++...+ +.+ |+- ... .+..+. ..++...+|.- |-.||-|
T Consensus 89 ~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~E---lTeGE~Q 165 (330)
T COG4170 89 HNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYE---LTEGECQ 165 (330)
T ss_pred cchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcch---hccCcce
Confidence 78899999874322 222 211 100 011222 23445555555 8899999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHHhHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIREE 312 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~~ 312 (327)
++.++.++ .+.|.+++.|+| ......++++..++...+
T Consensus 166 KVMIA~A~-AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~ 209 (330)
T COG4170 166 KVMIAIAL-ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN 209 (330)
T ss_pred eeeeehhh-ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence 99999988 999999998855 245555667776665544
No 427
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.63 E-value=5.9e-08 Score=89.66 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=31.7
Q ss_pred HhcCccccccccccccccc---cCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLHL---GEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h~---~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
..||+||+|++.++.++-. .+|+++++|+| .....+.+++.++.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~ 206 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA 206 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc
Confidence 4599999999999987722 35899999865 34444555666654
No 428
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.63 E-value=2.3e-08 Score=99.76 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=45.7
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-ceeecceeeccccc
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQRVGEVST 214 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~~v~~~s~ 214 (327)
.+|+++++.+ +|++++|+|||||||||||+ .+ +..|++| +|.++|.++...+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~------------l~~~~sGg~I~ldg~~~~~~~~ 74 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--EN------------KRKFSEGYEFFLDATHSFSPNK 74 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cC------------CCCCCCCCEEEECCEECCCCCH
Confidence 5788888887 89999999999999999999 55 6678888 79999999877543
No 429
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.61 E-value=1.4e-08 Score=101.48 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=43.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
+-++.++++|.....+++..+.+ +|+.++|+|+||+||||+|++|.+..
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 34577888999999999999997 99999999999999999999999943
No 430
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.57 E-value=7.9e-08 Score=77.94 Aligned_cols=22 Identities=50% Similarity=0.741 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEECCCCCCHHHHHHHHhcc
Confidence 4799999999999999999983
No 431
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.2e-08 Score=99.60 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=75.4
Q ss_pred hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
.+.++++.. ....++++|+||+||||+++++.+ -..|+.|.+. +|.+..++
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~------------~l~~~rgi~~----------------~~~r~ri~ 430 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKG------------DLTPTRGIVG----------------RHPRLRIK 430 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhc------------cCCcccceee----------------ecccceec
Confidence 444444444 356899999999999999999999 3456555433 33566677
Q ss_pred EEEccCC------CeEEe-----CcccCCcc----ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc
Q 020346 228 LLPLSGG------GYLAD-----TPGFNQPS----LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (327)
Q Consensus 228 ~v~q~~~------~~i~D-----tpg~~~~~----l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~ 292 (327)
+..|-.- ...+| -||..... +..+....-....+ ...|||||+-|++||.|. ...|.++|+|
T Consensus 431 ~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--i~~LSGGQKsrvafA~~~-~~~PhlLVLD 507 (582)
T KOG0062|consen 431 YFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS--IASLSGGQKSRVAFAACT-WNNPHLLVLD 507 (582)
T ss_pred chhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--ccccCCcchhHHHHHHHh-cCCCcEEEec
Confidence 7766320 00001 12221100 01111110011111 234999999999999999 8999999999
Q ss_pred cHH---HHHHHHHHHHHH
Q 020346 293 DWE---RYQYYFQLLDEI 307 (327)
Q Consensus 293 ~~~---r~~~~~~ll~e~ 307 (327)
+|. -.+..-+|.+-+
T Consensus 508 EPTNhLD~dsl~AL~~Al 525 (582)
T KOG0062|consen 508 EPTNHLDRDSLGALAKAL 525 (582)
T ss_pred CCCccccHHHHHHHHHHH
Confidence 885 334444444444
No 432
>COG1159 Era GTPase [General function prediction only]
Probab=98.54 E-value=1e-07 Score=89.56 Aligned_cols=58 Identities=38% Similarity=0.602 Sum_probs=41.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEE-E-EEEEcc-CCCe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH-V-SLLPLS-GGGY 236 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~-i-~~v~q~-~~~~ 236 (327)
-.+||||+|+||||||+|.|+| +++.-+|.++. ||++ + +.+..+ .+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G-------------------------~KisIvS~k~Q----TTR~~I~GI~t~~~~QiI 57 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVG-------------------------QKISIVSPKPQ----TTRNRIRGIVTTDNAQII 57 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhc-------------------------CceEeecCCcc----hhhhheeEEEEcCCceEE
Confidence 4699999999999999999999 44445555543 4544 2 333333 2456
Q ss_pred EEeCcccCCc
Q 020346 237 LADTPGFNQP 246 (327)
Q Consensus 237 i~Dtpg~~~~ 246 (327)
++||||+..+
T Consensus 58 fvDTPGih~p 67 (298)
T COG1159 58 FVDTPGIHKP 67 (298)
T ss_pred EEeCCCCCCc
Confidence 7899999876
No 433
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.52 E-value=2.1e-08 Score=98.71 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee-----------ecceeecccccc--CCCcceeeE
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FEDQRVGEVSTK--SGRGKHTTR 224 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~g~~v~~~s~~--~~~g~~tt~ 224 (327)
+|++++|+|+||.||||.++.|+| ...|.-|.-- |.|.++...-.+ .+.- ....
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaG------------el~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~-r~v~ 165 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAG------------ELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGEL-RAVH 165 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhC------------ccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCc-ceec
Confidence 799999999999999999999999 5566655411 111111111000 0000 0111
Q ss_pred EEEEEEccC---CCe------EEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 225 HVSLLPLSG---GGY------LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 225 ~i~~v~q~~---~~~------i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+.+|+-.-+ .+. -.|.-|......+.+.+..+.+ .-...|||||.||++++-|+ +.+.++.+.|++.
T Consensus 166 K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~---r~v~~LSGGELQr~aIaa~l-~rdADvY~FDEps 241 (591)
T COG1245 166 KPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD---RDVSELSGGELQRVAIAAAL-LRDADVYFFDEPS 241 (591)
T ss_pred chHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhh---hhhhhcCchHHHHHHHHHHH-hccCCEEEEcCCc
Confidence 222221111 111 1122232222233333333333 23344999999999999888 9999999988763
No 434
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.48 E-value=2.4e-07 Score=83.16 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=44.5
Q ss_pred ceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
..+.++|. ..+.+-++++.+ .|....+||.||+|||||+++|.|++ +..+ |.|.+.|.+
T Consensus 17 sgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh----------mv~~--~~v~Vlgrs 77 (291)
T KOG2355|consen 17 SGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH----------MVGG--GVVQVLGRS 77 (291)
T ss_pred eccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc----------cccC--CeEEEcCcC
Confidence 34555554 335667777777 78999999999999999999999976 3334 777777654
No 435
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.38 E-value=6.7e-07 Score=77.36 Aligned_cols=57 Identities=32% Similarity=0.494 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC-CCeEEe
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG-GGYLAD 239 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~-~~~i~D 239 (327)
.++|+|.||||||||+|+|.|.. ..++..+..+ .....+.+...+ ...++|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-----------------------~~v~n~pG~T-----v~~~~g~~~~~~~~~~lvD 53 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-----------------------QKVGNWPGTT-----VEKKEGIFKLGDQQVELVD 53 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-----------------------EEEEESTTSS-----SEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-----------------------ceecCCCCCC-----eeeeeEEEEecCceEEEEE
Confidence 58999999999999999999943 3344433221 233344444332 457899
Q ss_pred CcccCC
Q 020346 240 TPGFNQ 245 (327)
Q Consensus 240 tpg~~~ 245 (327)
+||+-.
T Consensus 54 lPG~ys 59 (156)
T PF02421_consen 54 LPGIYS 59 (156)
T ss_dssp ----SS
T ss_pred CCCccc
Confidence 999754
No 436
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.35 E-value=3.4e-07 Score=81.92 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.7
Q ss_pred HHHHhhc-CC-CEEEEEcCCCCCHHHHHHHHc
Q 020346 151 DSLLQRL-RD-QTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 151 ~~l~~~l-~g-~~v~lvG~sG~GKSTLln~L~ 180 (327)
-++++.+ +| ++++|+||||+|||||+++|.
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3456666 45 479999999999999999988
No 437
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=1.5e-06 Score=94.97 Aligned_cols=145 Identities=16% Similarity=0.262 Sum_probs=92.8
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
..+++++..+ +|+.+.++|++|+|||||+++|+|.... +..+ .|+|.+||.+..+... .+.+
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~--------~~~~-~~~isy~G~~~~e~~~--------~~~~ 191 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDN--------FLKS-SGEITYNGHDLKEFVP--------KKTV 191 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcc--------cccC-CCceeECCCccccccc--------CceE
Confidence 4677888777 8999999999999999999999996532 3333 3499999998877653 3457
Q ss_pred EEEEccC----CCeEEeCcccCCc------cccccCHhHHh----hhh---------------HHHHHhcCccccccccc
Q 020346 227 SLLPLSG----GGYLADTPGFNQP------SLLKVTKQSLA----QTF---------------PEIKEMLKANEPAKCSF 277 (327)
Q Consensus 227 ~~v~q~~----~~~i~Dtpg~~~~------~l~~~~~~~l~----~~~---------------~~~~~~LSgGq~q~~~~ 277 (327)
+|.+|.+ .+++.+|.-|... ..+.++..+.. +.. .++.+-+||||++|+.+
T Consensus 192 aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi 271 (1391)
T KOG0065|consen 192 AYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSI 271 (1391)
T ss_pred EeccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeee
Confidence 7887764 3455555433211 01112221111 111 11123379999999999
Q ss_pred cccccccCCceEEcccHH---HHHHHHHHHHHHHHh
Q 020346 278 NNCLHLGEPGCVVKGDWE---RYQYYFQLLDEIRIR 310 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~~---r~~~~~~ll~e~~~~ 310 (327)
+..+ +..+.....|+.. --....++++-++..
T Consensus 272 ~E~~-v~~~~~~~~De~t~GLDSsTal~iik~lr~~ 306 (1391)
T KOG0065|consen 272 GEML-VGPASILFWDEITRGLDSSTAFQIIKALRQL 306 (1391)
T ss_pred eeee-ecCcceeeeecccccccHHHHHHHHHHHHHH
Confidence 9888 8899999988653 223333444444433
No 438
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.33 E-value=1.2e-06 Score=77.49 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=40.2
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
...+-+.+.+ .|+.++|+|+||||||||+++|++ +++|+.|.|.+++.
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~------------~i~~~~~~i~ied~ 61 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLA------------FIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh------------hcCCCCCEEEECCc
Confidence 3444555555 799999999999999999999999 88899999998764
No 439
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.31 E-value=4.1e-07 Score=89.12 Aligned_cols=101 Identities=21% Similarity=0.315 Sum_probs=63.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC----CC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG----GG 235 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~----~~ 235 (327)
+++..+|.||.|||||+++|+| ..+|++|. ..+. -.++|=||.. .+
T Consensus 368 eiivmlgEngtgkTTfi~mlag------------~~~pd~~~----e~p~--------------lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAG------------RLKPDEGG----EIPV--------------LNVSYKPQKISPKREG 417 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhc------------CCCCCccC----cccc--------------cceeccccccCccccc
Confidence 6899999999999999999999 66787763 1111 1233333321 00
Q ss_pred --------eEEe---CcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH
Q 020346 236 --------YLAD---TPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 236 --------~i~D---tpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
.+.| .|-|.... +..-.+.+........|||||.||++++-|+ -...++.+.|+|
T Consensus 418 tvR~ll~~kIr~ay~~pqF~~dv---mkpL~ie~i~dqevq~lSggelQRval~KOG-GKpAdvYliDEp 483 (592)
T KOG0063|consen 418 TVRQLLHTKIRDAYMHPQFVNDV---MKPLQIENIIDQEVQGLSGGELQRVALALCL-GKPADVYLIDEP 483 (592)
T ss_pred hHHHHHHHHhHhhhcCHHHHHhh---hhhhhHHHHHhHHhhcCCchhhHHHHHHHhc-CCCCceEEecCc
Confidence 0111 11121111 1222334444445566999999999999998 777888887765
No 440
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.31 E-value=1.2e-06 Score=81.50 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..-+++|+|++|||||||+|+|.|.
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999994
No 441
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.29 E-value=1.1e-06 Score=78.28 Aligned_cols=61 Identities=33% Similarity=0.290 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEc--cCCCeEE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL--SGGGYLA 238 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q--~~~~~i~ 238 (327)
.++|+|+||||||||+|+|+| ...|++|.+..+... ++.....+.. ..+..++
T Consensus 3 kI~i~G~~g~GKSSLin~L~g------------~~~~~~~~~~~~~~~-------------~t~~~~~~~~~~~~~l~l~ 57 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRG------------VGHEEEGAAPTGVVE-------------TTMKRTPYPHPKFPNVTLW 57 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhc------------cCCCCCCccccCccc-------------cccCceeeecCCCCCceEE
Confidence 589999999999999999999 445666665443111 2222222322 2357899
Q ss_pred eCcccCCc
Q 020346 239 DTPGFNQP 246 (327)
Q Consensus 239 Dtpg~~~~ 246 (327)
||||+...
T Consensus 58 DtpG~~~~ 65 (197)
T cd04104 58 DLPGIGST 65 (197)
T ss_pred eCCCCCcc
Confidence 99998753
No 442
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.27 E-value=3.4e-06 Score=73.65 Aligned_cols=60 Identities=33% Similarity=0.538 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
.-.++|+|++|+|||||+|.|.+.. .+...+...+ +|..+.++..+.+..++
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~~~li 69 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRK------------------------KLARTSKTPG----RTQLINFFEVNDGFRLV 69 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC------------------------CcccccCCCC----cceEEEEEEeCCcEEEE
Confidence 4579999999999999999999832 0112222222 45555555544567889
Q ss_pred eCcccCCc
Q 020346 239 DTPGFNQP 246 (327)
Q Consensus 239 Dtpg~~~~ 246 (327)
||||+...
T Consensus 70 DtpG~~~~ 77 (179)
T TIGR03598 70 DLPGYGYA 77 (179)
T ss_pred eCCCCccc
Confidence 99997643
No 443
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.27 E-value=1.5e-06 Score=76.20 Aligned_cols=59 Identities=32% Similarity=0.472 Sum_probs=39.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
.-.++|+|.+|||||||+|.|.+.. + +...+...+ +|+.+.++.......++
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~----------~--------------~~~~~~~~~----~t~~~~~~~~~~~l~l~ 75 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRK----------N--------------LARTSKTPG----RTQLINFFEVNDKLRLV 75 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC----------C--------------cccccCCCC----ceeEEEEEecCCeEEEe
Confidence 3569999999999999999999832 1 112222222 45555555544567889
Q ss_pred eCcccCC
Q 020346 239 DTPGFNQ 245 (327)
Q Consensus 239 Dtpg~~~ 245 (327)
||||+..
T Consensus 76 DtpG~~~ 82 (196)
T PRK00454 76 DLPGYGY 82 (196)
T ss_pred CCCCCCC
Confidence 9999754
No 444
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.26 E-value=1.1e-06 Score=82.14 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|+|.|.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~ 23 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ 23 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999993
No 445
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.25 E-value=2e-06 Score=85.22 Aligned_cols=77 Identities=32% Similarity=0.396 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC---
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--- 234 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~--- 234 (327)
.|-.++|+|+||||||||+|+|+++..+ -|+.+ +| ||+.+--....-+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~A----------------------IVTdI---~G----TTRDviee~i~i~G~p 266 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRA----------------------IVTDI---AG----TTRDVIEEDINLNGIP 266 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCce----------------------EecCC---CC----CccceEEEEEEECCEE
Confidence 5789999999999999999999995532 13333 34 8888754444333
Q ss_pred CeEEeCcccCCccccccCHhHHhhhhHHHH
Q 020346 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIK 264 (327)
Q Consensus 235 ~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~ 264 (327)
..++||.|++... +.++...+......+.
T Consensus 267 v~l~DTAGiRet~-d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 267 VRLVDTAGIRETD-DVVERIGIERAKKAIE 295 (454)
T ss_pred EEEEecCCcccCc-cHHHHHHHHHHHHHHH
Confidence 3688999999653 2334444444444443
No 446
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.25 E-value=1.7e-06 Score=76.83 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
+++|+|.||||||||+|.|+|..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 58999999999999999999943
No 447
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.23 E-value=1.9e-06 Score=72.41 Aligned_cols=57 Identities=32% Similarity=0.444 Sum_probs=37.3
Q ss_pred EEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeCc
Q 020346 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dtp 241 (327)
++++|++|||||||+|.|.+.. ..++.+|++ + .+.....+..+....++|+|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~----------~~~~~~~~~--------------~----~t~~~~~~~~~~~~~~~D~~ 53 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRK----------KLARTSKTP--------------G----KTQLINFFNVNDKFRLVDLP 53 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----------ceeeecCCC--------------C----cceeEEEEEccCeEEEecCC
Confidence 7899999999999999999421 333333321 1 23333344444466788999
Q ss_pred ccCCc
Q 020346 242 GFNQP 246 (327)
Q Consensus 242 g~~~~ 246 (327)
|+...
T Consensus 54 g~~~~ 58 (170)
T cd01876 54 GYGYA 58 (170)
T ss_pred Ccccc
Confidence 97654
No 448
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.23 E-value=9.3e-07 Score=100.21 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=35.6
Q ss_pred hcCcccccccccccccc--ccCCceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 266 MLKANEPAKCSFNNCLH--LGEPGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h--~~ep~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
.|||||+||+++++++. ..+|.++|+|+| ...+.+.++++++.+.+
T Consensus 809 tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G 862 (1809)
T PRK00635 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862 (1809)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 39999999999999883 269999999965 45666667777765443
No 449
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=2.3e-06 Score=85.00 Aligned_cols=61 Identities=38% Similarity=0.414 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC---
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG--- 234 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~--- 234 (327)
.|-.++|+|+||||||||+|+|.... ..-+++.+| ||+..--.+.+.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~d-------------------------rsIVSpv~G----TTRDaiea~v~~~G~~ 317 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRED-------------------------RSIVSPVPG----TTRDAIEAQVTVNGVP 317 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCC-------------------------ceEeCCCCC----cchhhheeEeecCCeE
Confidence 57789999999999999999999944 333444445 7776554444443
Q ss_pred CeEEeCcccCCcc
Q 020346 235 GYLADTPGFNQPS 247 (327)
Q Consensus 235 ~~i~Dtpg~~~~~ 247 (327)
.++.||.|++...
T Consensus 318 v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 318 VRLSDTAGIREES 330 (531)
T ss_pred EEEEecccccccc
Confidence 3788999999743
No 450
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.19 E-value=1.4e-06 Score=94.39 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=35.0
Q ss_pred hcCccccccccccccccccCC---ceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 266 MLKANEPAKCSFNNCLHLGEP---GCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep---~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
.|||||+||++++.++ +.+| .+.|+|+| ...+.+.++++++.+.+
T Consensus 830 tLSgGEkQRl~LAraL-~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G 883 (943)
T PRK00349 830 TLSGGEAQRVKLAKEL-SKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKG 883 (943)
T ss_pred cCCHHHHHHHHHHHHH-hcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3899999999999988 7788 89999865 45566667777765443
No 451
>PRK00089 era GTPase Era; Reviewed
Probab=98.16 E-value=3.6e-06 Score=79.36 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|++|||||||+|.|.|.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999993
No 452
>PRK15494 era GTPase Era; Provisional
Probab=98.14 E-value=2.4e-06 Score=82.80 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=33.3
Q ss_pred CceeeccCc-chhhHHHHHhhc-CCC-------EEEEEcCCCCCHHHHHHHHcCC
Q 020346 137 YEPLFCSVE-SKLGLDSLLQRL-RDQ-------TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~-------~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+....++|. ....+..+.+.+ .|+ .++|+|.+|||||||+|.|.|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 21 ALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred cccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 344444443 233556666665 566 8999999999999999999983
No 453
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.14 E-value=5.2e-06 Score=73.23 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=32.1
Q ss_pred cCcccccccccccccc---ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLH---LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h---~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+|++.+++++- +..|.+++.|+| ...+.+.+++.++..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~ 146 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK 146 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999998762 368999998854 355555566666543
No 454
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.13 E-value=2.3e-06 Score=77.61 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=29.9
Q ss_pred hcCcccccccccccccc---ccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLH---LGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h---~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.||+||+|++.++.++. +.+|.+.+.|+| .......+++.++..
T Consensus 126 ~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~ 178 (213)
T cd03277 126 HQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETAC 178 (213)
T ss_pred hccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhh
Confidence 49999999877654321 579999999865 344555555655543
No 455
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.12 E-value=3.8e-06 Score=72.63 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=23.2
Q ss_pred cCccccccccccccccc---cCCceEEcccH
Q 020346 267 LKANEPAKCSFNNCLHL---GEPGCVVKGDW 294 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~---~ep~~~v~~~~ 294 (327)
||+||++++.+++++.. .+|.+++.||+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp 108 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEI 108 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCC
Confidence 99999999999987732 27899998854
No 456
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.11 E-value=6.2e-06 Score=68.81 Aligned_cols=24 Identities=54% Similarity=0.696 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
|..++++|++|+|||||+|.|.+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 567999999999999999999983
No 457
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.02 E-value=6.8e-06 Score=74.28 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
++.|+|++||||||++|.|+|..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999954
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.02 E-value=4.7e-06 Score=74.26 Aligned_cols=25 Identities=48% Similarity=0.736 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+|+.++|+||||||||||+++|.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999983
No 459
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.00 E-value=1.4e-05 Score=66.85 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+++++|++|||||||+|.|+|.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 460
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.00 E-value=6.9e-06 Score=81.26 Aligned_cols=59 Identities=32% Similarity=0.392 Sum_probs=39.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEE--EEc-cCCCe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPL-SGGGY 236 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~--v~q-~~~~~ 236 (327)
.+++|||.||||||||+|.|+|+. ..=++..+| +|+..-| ..+ +....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-------------------------~AIV~D~pG----vTRDr~y~~~~~~~~~f~ 54 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-------------------------IAIVSDTPG----VTRDRIYGDAEWLGREFI 54 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-------------------------eeEeecCCC----CccCCccceeEEcCceEE
Confidence 479999999999999999999943 223333344 5544332 122 22468
Q ss_pred EEeCcccCCcc
Q 020346 237 LADTPGFNQPS 247 (327)
Q Consensus 237 i~Dtpg~~~~~ 247 (327)
++||.|+....
T Consensus 55 lIDTgGl~~~~ 65 (444)
T COG1160 55 LIDTGGLDDGD 65 (444)
T ss_pred EEECCCCCcCC
Confidence 89999987533
No 461
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.98 E-value=1.4e-05 Score=76.32 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.-+++|+|.+|+|||||+|.|+|..
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999999943
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.97 E-value=5.3e-06 Score=73.26 Aligned_cols=23 Identities=48% Similarity=0.780 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
|+.++|+||||||||||+++|.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 67899999999999999999998
No 463
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.96 E-value=1.1e-05 Score=68.77 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|+|.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc
Confidence 379999999999999999998
No 464
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.88 E-value=1.9e-05 Score=77.96 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
-++|||.||||||||||.|++
T Consensus 161 dValVG~PNaGKSTLln~Lt~ 181 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSA 181 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhC
Confidence 499999999999999999998
No 465
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.87 E-value=2.2e-05 Score=67.33 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+.-.++|+|++|||||||++.|.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3467999999999999999999994
No 466
>PRK04213 GTP-binding protein; Provisional
Probab=97.87 E-value=2.5e-05 Score=69.11 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|++|||||||+|.|.+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~ 31 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTG 31 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999998
No 467
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.87 E-value=2.8e-05 Score=65.49 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|++|||||||+|.|.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 689999999999999999998
No 468
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.86 E-value=1.8e-05 Score=67.40 Aligned_cols=23 Identities=39% Similarity=0.785 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++++|||++|||||||+++|.|.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 57899999999999999999993
No 469
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.85 E-value=1.4e-05 Score=79.95 Aligned_cols=73 Identities=25% Similarity=0.240 Sum_probs=53.2
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc---ccCCCccee
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS---TKSGRGKHT 222 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s---~~~~~g~~t 222 (327)
..+++++ +.+ +|++++|+|+||+|||||+++|++ +++|+.|.|.+.|+.-.++. .........
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~------------~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l 212 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIAR------------NTSADLNVIALIGERGREVREFIERDLGPEGL 212 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhc------------ccCCCeEEEEEEecCCccHHHHHHhhcChhhh
Confidence 4577888 665 999999999999999999999999 88999999999665544332 111111125
Q ss_pred eEEEEEEEcc
Q 020346 223 TRHVSLLPLS 232 (327)
Q Consensus 223 t~~i~~v~q~ 232 (327)
.+.+.++...
T Consensus 213 ~r~v~vv~~~ 222 (438)
T PRK07721 213 KRSIVVVATS 222 (438)
T ss_pred cCeEEEEECC
Confidence 5667777664
No 470
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=1.9e-05 Score=85.57 Aligned_cols=31 Identities=39% Similarity=0.470 Sum_probs=27.5
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHH
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINA 178 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~ 178 (327)
..++++++.+ .|+.++|+|+||||||||++-
T Consensus 621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 621 NNLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred CCcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 4578888887 899999999999999999983
No 471
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.85 E-value=6.1e-06 Score=82.40 Aligned_cols=74 Identities=20% Similarity=0.102 Sum_probs=53.5
Q ss_pred hhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc---eeeccccccCCCcceee
Q 020346 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED---QRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 147 ~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g---~~v~~~s~~~~~g~~tt 223 (327)
..+++.++-.-+|++++|+|+||+|||||+++|.+ +.+|+.|.|.+.| .++.+..... ......
T Consensus 153 i~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~------------l~~pd~gvv~liGergrev~e~~~~~-l~~~r~ 219 (450)
T PRK06002 153 VRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLAR------------ADAFDTVVIALVGERGREVREFLEDT-LADNLK 219 (450)
T ss_pred cEEeeeeceecCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCeeeeeecccCCccHHHHhHHH-HHHhhC
Confidence 34666665323999999999999999999999999 7789999998864 5554433211 111234
Q ss_pred EEEEEEEccC
Q 020346 224 RHVSLLPLSG 233 (327)
Q Consensus 224 ~~i~~v~q~~ 233 (327)
+.+++++|.+
T Consensus 220 rtI~vV~qsd 229 (450)
T PRK06002 220 KAVAVVATSD 229 (450)
T ss_pred CeEEEEEcCC
Confidence 6789999975
No 472
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.85 E-value=9.3e-06 Score=59.37 Aligned_cols=24 Identities=46% Similarity=0.908 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|..+.|.|+||+|||||+.++.=
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999998764
No 473
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.84 E-value=2.1e-05 Score=74.34 Aligned_cols=60 Identities=35% Similarity=0.500 Sum_probs=42.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE--EEEcc-CCCe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS--LLPLS-GGGY 236 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~--~v~q~-~~~~ 236 (327)
-.+|+||+||||||||.|.+.| .++..+|.+. |||++-. .+.-. ....
T Consensus 73 L~vavIG~PNvGKStLtN~mig-------------------------~kv~~vS~K~----~TTr~~ilgi~ts~eTQlv 123 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIG-------------------------QKVSAVSRKV----HTTRHRILGIITSGETQLV 123 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhC-------------------------Cccccccccc----cceeeeeeEEEecCceEEE
Confidence 3689999999999999999999 4555665543 4666533 33221 1456
Q ss_pred EEeCcccCCccc
Q 020346 237 LADTPGFNQPSL 248 (327)
Q Consensus 237 i~Dtpg~~~~~l 248 (327)
++||||+..+..
T Consensus 124 f~DTPGlvs~~~ 135 (379)
T KOG1423|consen 124 FYDTPGLVSKKM 135 (379)
T ss_pred EecCCcccccch
Confidence 789999987653
No 474
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.84 E-value=1.5e-05 Score=66.65 Aligned_cols=19 Identities=53% Similarity=0.760 Sum_probs=18.1
Q ss_pred EEEcCCCCCHHHHHHHHcC
Q 020346 163 VIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 163 ~lvG~sG~GKSTLln~L~g 181 (327)
+++|.+|||||||+|.|.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~ 19 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTG 19 (157)
T ss_pred CccCCCCCCHHHHHHHHhC
Confidence 5899999999999999998
No 475
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.83 E-value=1.1e-05 Score=77.67 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++++++|+||||+||||++..|++ ++.+..++|.+-+.++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~------------~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH------------KYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH------------HHHhcCCeEEEEecCcc
Confidence 578999999999999999999999 77888889998877763
No 476
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.83 E-value=4.8e-05 Score=78.86 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-+++|+|++|+|||||+|.|+|.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGe 141 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGE 141 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhcc
Confidence 36999999999999999999994
No 477
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=3.8e-06 Score=78.98 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=30.9
Q ss_pred HhcCcccccccccccccc-c--cCCceEEcccH------HHHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLH-L--GEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h-~--~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
..||+||+||+.++.+.- . ..|+++++|+| .....+.+++.++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~ 220 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL 220 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 459999999999997542 2 39999999865 3455555566555
No 478
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.83 E-value=1.4e-05 Score=68.27 Aligned_cols=19 Identities=53% Similarity=0.824 Sum_probs=17.7
Q ss_pred EEcCCCCCHHHHHHHHcCC
Q 020346 164 IVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 164 lvG~sG~GKSTLln~L~g~ 182 (327)
|+|++|||||||+|+|.+.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 6899999999999999993
No 479
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=6.4e-06 Score=81.17 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=40.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
+-++.+.+|+..+..+.+-++.+ .|.++++|||||-|||||++.|..+.
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 44567777877777777777775 89999999999999999999999854
No 480
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.82 E-value=3.7e-05 Score=67.18 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=28.7
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++++..+...++|+|++|||||||+|.|.+.
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4677776666667899999999999999999983
No 481
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.81 E-value=4.1e-05 Score=73.01 Aligned_cols=62 Identities=29% Similarity=0.326 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE--EEEEccC-CC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV--SLLPLSG-GG 235 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i--~~v~q~~-~~ 235 (327)
.-++.|.|+||||||||+++|.+-. -++...+- ||+.+ |.+.... ..
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak-----------------------pEvA~YPF-------TTK~i~vGhfe~~~~R~ 217 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK-----------------------PEVAPYPF-------TTKGIHVGHFERGYLRI 217 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC-----------------------CccCCCCc-------cccceeEeeeecCCceE
Confidence 4689999999999999999999932 23444442 55554 4443332 34
Q ss_pred eEEeCcccCCccccc
Q 020346 236 YLADTPGFNQPSLLK 250 (327)
Q Consensus 236 ~i~Dtpg~~~~~l~~ 250 (327)
.++||||+-+..++.
T Consensus 218 QvIDTPGlLDRPl~E 232 (346)
T COG1084 218 QVIDTPGLLDRPLEE 232 (346)
T ss_pred EEecCCcccCCChHH
Confidence 789999998766543
No 482
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.81 E-value=2.9e-05 Score=68.96 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999983
No 483
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.79 E-value=1.9e-05 Score=69.52 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+|+||+|||||+++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999999
No 484
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.78 E-value=5.9e-05 Score=71.35 Aligned_cols=23 Identities=43% Similarity=0.741 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++++|+||+|||||||.|.+..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~ 28 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSD 28 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999999954
No 485
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.77 E-value=4.6e-05 Score=64.88 Aligned_cols=22 Identities=55% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++|.+|||||||+|.|.+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 5899999999999999999983
No 486
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.76 E-value=9.2e-05 Score=69.80 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++++|+||+|||||+|.|.+..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~ 28 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTK 28 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999843
No 487
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.76 E-value=5.1e-05 Score=76.17 Aligned_cols=25 Identities=48% Similarity=0.587 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.|-.++|+|++|||||||+|.|++.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5678999999999999999999983
No 488
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.74 E-value=2.6e-05 Score=76.29 Aligned_cols=23 Identities=52% Similarity=0.728 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.+||+|.||+|||||||+|.|
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999999
No 489
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.72 E-value=6e-05 Score=69.18 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|+||||||||+|.|.|.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~ 23 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNT 23 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999993
No 490
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.72 E-value=4.4e-05 Score=73.01 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
+-+.+.+ .|+.++|+|++|||||||+++|++ +++|..|.+.++
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~------------~~~~~~~iv~ie 178 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVD------------EIPKDERIITIE 178 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc------------cCCccccEEEEc
Confidence 3345555 789999999999999999999999 888888888875
No 491
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.72 E-value=2.7e-05 Score=64.68 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHcCC
Q 020346 162 TVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~ 182 (327)
++|+|++|||||||+|.|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999994
No 492
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.72 E-value=0.00026 Score=69.18 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-.++|||.||||||||+|+|.+..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999943
No 493
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.71 E-value=3.6e-05 Score=78.28 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=51.5
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
.+...++...+++.+++.+ .|+.++|+|+||+|||||++.|.| +.+|.+|++.++...+..+
T Consensus 189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~g------------llpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRING------------LLPDLSNEEALESAAILSL 251 (506)
T ss_pred CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhc------------cCCCCCCcEEEecchhhhh
Confidence 3444455667888887776 789999999999999999999999 8999999999888776544
No 494
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=97.70 E-value=8.5e-05 Score=55.20 Aligned_cols=59 Identities=29% Similarity=0.299 Sum_probs=48.6
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEE
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i 59 (327)
|.|.|++.-|+..+-...++|....|.++|++++.+..+.+||.|.++..+.+..+|.|
T Consensus 7 ~~G~V~e~L~~~~f~V~l~ng~~vla~i~GKmr~~rI~I~~GD~V~Ve~spyd~tkgrI 65 (68)
T TIGR00008 7 MEGKVTESLPNAMFRVELENGHEVLAHISGKIRMHYIRILPGDKVKVELSPYDLTRGRI 65 (68)
T ss_pred EEEEEEEECCCCEEEEEECCCCEEEEEecCcchhccEEECCCCEEEEEECcccCCcEeE
Confidence 46899999888775544568999999999999988899999999999987665556655
No 495
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.68 E-value=1.9e-05 Score=78.75 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=49.1
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc---cceeecceeeccccccC-CCcce
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRVGEVSTKS-GRGKH 221 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~---G~i~~~g~~v~~~s~~~-~~g~~ 221 (327)
..+++++ +.+ +|++++|+|+||+|||||+++|++ +++|+. |.|-.++.++.+..... .....
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g------------~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl 209 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITR------------YTQADVVVVGLIGERGREVKEFIEHSLQAAGM 209 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhc------------ccCCCeEEEEEEeeecHHHHHHHHHHhhhccc
Confidence 3578888 666 899999999999999999999999 666664 33444444444322111 11112
Q ss_pred eeEEEEEEEccC
Q 020346 222 TTRHVSLLPLSG 233 (327)
Q Consensus 222 tt~~i~~v~q~~ 233 (327)
.++.+.+.+++.
T Consensus 210 ~rsvvv~~~~d~ 221 (434)
T PRK07196 210 AKSVVVAAPADE 221 (434)
T ss_pred ceEEEEEecCCC
Confidence 345677777763
No 496
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.68 E-value=2.6e-05 Score=71.20 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~ 201 (327)
+..+++|.|+||||||||++.|.+ +++++.|.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~------------~l~~~~g~ 63 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA------------LLQQDGEL 63 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH------------HhhhccCC
Confidence 457999999999999999999999 78888887
No 497
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.66 E-value=7.3e-05 Score=63.42 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|++|||||||+|.|.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~ 22 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRK 22 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHh
Confidence 589999999999999999997
No 498
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.64 E-value=6.2e-05 Score=70.92 Aligned_cols=22 Identities=50% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHcCCC
Q 020346 162 TVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~~ 183 (327)
++|||.|+||||||+|+|.+..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~ 22 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG 22 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC
Confidence 5899999999999999999944
No 499
>PTZ00258 GTP-binding protein; Provisional
Probab=97.64 E-value=9.9e-05 Score=72.78 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+-.++|||.||||||||+|+|.+.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~ 44 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQ 44 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcC
Confidence 5678999999999999999999884
No 500
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.63 E-value=8.6e-05 Score=67.81 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+++|+|+.++|||||||.|.|.
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~ 30 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGT 30 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999994
Done!