Query 020346
Match_columns 327
No_of_seqs 341 out of 3108
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t9h_A YLOQ, probable GTPase E 100.0 1.1E-48 3.9E-53 370.6 18.8 278 2-309 12-302 (307)
2 2rcn_A Probable GTPase ENGC; Y 100.0 1.1E-46 3.9E-51 363.4 22.1 279 1-319 48-354 (358)
3 2yv5_A YJEQ protein; hydrolase 100.0 1.5E-41 5E-46 321.1 21.5 273 1-308 7-292 (302)
4 1u0l_A Probable GTPase ENGC; p 100.0 6.1E-34 2.1E-38 268.5 25.5 274 1-309 11-297 (301)
5 3fvq_A Fe(3+) IONS import ATP- 99.9 5.8E-24 2E-28 205.0 -1.9 141 135-294 5-165 (359)
6 3rlf_A Maltose/maltodextrin im 99.9 9.3E-24 3.2E-28 205.0 -1.7 152 135-309 4-181 (381)
7 4g1u_C Hemin import ATP-bindin 99.9 1.3E-23 4.3E-28 195.1 -2.8 154 136-310 13-196 (266)
8 3nh6_A ATP-binding cassette SU 99.9 1.7E-23 5.9E-28 197.9 -2.1 155 135-307 54-236 (306)
9 2pcj_A ABC transporter, lipopr 99.8 1.1E-23 3.8E-28 190.5 -4.5 159 136-310 6-189 (224)
10 3gfo_A Cobalt import ATP-bindi 99.8 1.1E-22 3.6E-27 189.8 1.9 155 135-308 8-190 (275)
11 2ff7_A Alpha-hemolysin translo 99.8 5.1E-23 1.7E-27 188.9 -0.3 156 134-307 7-191 (247)
12 2olj_A Amino acid ABC transpor 99.8 4.8E-23 1.6E-27 190.9 -0.5 160 135-310 25-208 (263)
13 1g6h_A High-affinity branched- 99.8 4.5E-23 1.6E-27 190.2 -0.7 159 135-310 8-202 (257)
14 1z47_A CYSA, putative ABC-tran 99.8 4.2E-23 1.4E-27 198.9 -1.0 152 135-309 15-193 (355)
15 2yyz_A Sugar ABC transporter, 99.8 5.2E-23 1.8E-27 198.6 -0.5 151 136-309 5-181 (359)
16 1v43_A Sugar-binding transport 99.8 2.4E-22 8.1E-27 194.8 4.1 152 135-309 12-189 (372)
17 3tui_C Methionine import ATP-b 99.8 1.9E-23 6.4E-28 201.8 -4.0 158 135-310 25-212 (366)
18 2it1_A 362AA long hypothetical 99.8 3.6E-23 1.2E-27 199.8 -2.3 151 136-309 5-181 (362)
19 3tif_A Uncharacterized ABC tra 99.8 9.7E-23 3.3E-27 185.7 0.6 159 137-309 4-193 (235)
20 1ji0_A ABC transporter; ATP bi 99.8 2.4E-23 8.2E-28 190.2 -4.1 157 136-309 8-187 (240)
21 1vpl_A ABC transporter, ATP-bi 99.8 3E-23 1E-27 191.6 -3.8 155 135-309 16-194 (256)
22 1g29_1 MALK, maltose transport 99.8 6.1E-23 2.1E-27 199.0 -2.2 151 136-309 5-187 (372)
23 1oxx_K GLCV, glucose, ABC tran 99.8 5.6E-23 1.9E-27 198.0 -2.8 155 136-308 5-187 (353)
24 3d31_A Sulfate/molybdate ABC t 99.8 4.2E-23 1.4E-27 198.5 -4.3 149 137-309 4-175 (348)
25 1b0u_A Histidine permease; ABC 99.8 5.3E-23 1.8E-27 190.4 -3.9 158 135-310 7-202 (262)
26 2ixe_A Antigen peptide transpo 99.8 1.2E-22 4.1E-27 188.9 -1.5 155 135-307 17-202 (271)
27 2ihy_A ABC transporter, ATP-bi 99.8 7.9E-23 2.7E-27 191.0 -2.8 158 135-310 22-210 (279)
28 1mv5_A LMRA, multidrug resista 99.8 2E-22 6.9E-27 184.3 -1.5 151 137-308 4-186 (243)
29 1sgw_A Putative ABC transporte 99.8 9.1E-23 3.1E-27 183.6 -3.8 152 135-310 11-182 (214)
30 2yz2_A Putative ABC transporte 99.8 4E-22 1.4E-26 184.8 -3.0 150 137-310 5-187 (266)
31 2onk_A Molybdate/tungstate ABC 99.8 4.8E-22 1.6E-26 181.8 -3.3 147 137-309 4-174 (240)
32 3b5x_A Lipid A export ATP-bind 99.8 7.7E-21 2.6E-25 193.9 4.1 155 135-307 342-526 (582)
33 3gd7_A Fusion complex of cysti 99.8 8.2E-22 2.8E-26 192.1 -3.1 142 135-295 20-183 (390)
34 2ghi_A Transport protein; mult 99.8 2.1E-21 7E-26 179.5 -0.5 152 135-308 18-202 (260)
35 2qi9_C Vitamin B12 import ATP- 99.8 1.4E-21 4.7E-26 179.7 -2.8 140 148-309 14-181 (249)
36 3qf4_B Uncharacterized ABC tra 99.8 5.8E-21 2E-25 195.5 1.1 155 135-307 355-537 (598)
37 2d2e_A SUFC protein; ABC-ATPas 99.8 1.3E-22 4.5E-27 186.4 -10.1 156 136-308 5-190 (250)
38 2yl4_A ATP-binding cassette SU 99.8 3.7E-21 1.3E-25 196.7 -0.9 156 135-308 342-530 (595)
39 4a82_A Cystic fibrosis transme 99.8 7.6E-21 2.6E-25 193.8 0.2 155 135-307 340-523 (578)
40 3b60_A Lipid A export ATP-bind 99.8 5.9E-21 2E-25 194.8 -1.0 153 135-308 342-527 (582)
41 2zu0_C Probable ATP-dependent 99.8 4E-21 1.4E-25 178.2 -2.2 156 135-307 21-210 (267)
42 3qf4_A ABC transporter, ATP-bi 99.8 8.7E-21 3E-25 193.8 -0.0 155 135-307 342-525 (587)
43 2pze_A Cystic fibrosis transme 99.8 6.7E-21 2.3E-25 172.8 -2.1 130 135-295 7-158 (229)
44 2nq2_C Hypothetical ABC transp 99.8 9.2E-21 3.1E-25 174.5 -1.4 143 136-309 6-176 (253)
45 4f4c_A Multidrug resistance pr 99.8 9.1E-21 3.1E-25 209.2 -2.3 142 134-294 1076-1244(1321)
46 2pjz_A Hypothetical protein ST 99.8 4.1E-21 1.4E-25 177.9 -4.7 146 137-307 4-174 (263)
47 2cbz_A Multidrug resistance-as 99.8 2.7E-20 9.1E-25 169.7 -0.4 129 135-295 4-155 (237)
48 4f4c_A Multidrug resistance pr 99.7 5.9E-20 2E-24 202.8 -0.7 142 135-294 416-581 (1321)
49 3cnl_A YLQF, putative uncharac 99.7 7E-18 2.4E-22 156.0 8.9 141 71-248 16-159 (262)
50 3g5u_A MCG1178, multidrug resi 99.7 4.1E-19 1.4E-23 195.6 0.3 139 135-294 388-553 (1284)
51 1puj_A YLQF, conserved hypothe 99.7 1.8E-17 6.1E-22 154.8 11.1 143 72-248 19-180 (282)
52 2bbs_A Cystic fibrosis transme 99.7 4.1E-19 1.4E-23 166.7 -3.0 128 135-295 41-187 (290)
53 3g5u_A MCG1178, multidrug resi 99.7 7.9E-19 2.7E-23 193.4 -1.2 153 135-306 1031-1216(1284)
54 3ozx_A RNAse L inhibitor; ATP 99.6 1E-16 3.5E-21 162.2 -0.7 119 158-309 293-433 (538)
55 1yqt_A RNAse L inhibitor; ATP- 99.6 6.8E-17 2.3E-21 163.5 -4.1 152 138-309 25-206 (538)
56 3ec1_A YQEH GTPase; atnos1, at 99.6 1.3E-14 4.6E-19 140.1 11.9 146 73-247 68-226 (369)
57 3bk7_A ABC transporter ATP-bin 99.6 1.8E-16 6E-21 162.5 -1.7 126 150-308 372-518 (607)
58 3bk7_A ABC transporter ATP-bin 99.5 1.3E-16 4.3E-21 163.6 -3.4 152 138-309 95-276 (607)
59 1yqt_A RNAse L inhibitor; ATP- 99.5 3E-16 1E-20 158.7 -0.6 123 152-308 304-448 (538)
60 3sop_A Neuronal-specific septi 99.5 4.5E-15 1.5E-19 137.7 7.0 101 161-281 4-113 (270)
61 3b85_A Phosphate starvation-in 99.5 3.4E-16 1.2E-20 139.9 -0.9 127 141-297 7-134 (208)
62 3h2y_A GTPase family protein; 99.5 1.6E-14 5.5E-19 139.6 10.1 158 73-258 66-238 (368)
63 2iw3_A Elongation factor 3A; a 99.5 1.2E-15 4E-20 162.9 -0.8 57 138-206 675-734 (986)
64 3ozx_A RNAse L inhibitor; ATP 99.5 5.7E-15 1.9E-19 149.4 0.4 135 158-308 24-185 (538)
65 1tq4_A IIGP1, interferon-induc 99.4 1.6E-14 5.4E-19 141.7 0.4 132 146-307 35-212 (413)
66 3j16_B RLI1P; ribosome recycli 99.4 1.9E-15 6.5E-20 154.8 -7.9 52 139-202 82-134 (608)
67 3j16_B RLI1P; ribosome recycli 99.4 4.3E-14 1.5E-18 144.8 1.7 127 148-308 361-514 (608)
68 3ux8_A Excinuclease ABC, A sub 99.4 7.8E-15 2.7E-19 151.8 -3.9 44 266-310 202-253 (670)
69 2pt7_A CAG-ALFA; ATPase, prote 99.4 3.3E-13 1.1E-17 128.5 6.0 110 137-307 151-261 (330)
70 1z6g_A Guanylate kinase; struc 99.4 1.7E-14 5.7E-19 129.2 -3.2 127 146-294 9-154 (218)
71 2npi_A Protein CLP1; CLP1-PCF1 99.3 9.8E-14 3.4E-18 137.8 -0.9 111 152-295 130-270 (460)
72 2v9p_A Replication protein E1; 99.3 4.9E-13 1.7E-17 126.1 2.9 55 135-205 102-157 (305)
73 3aez_A Pantothenate kinase; tr 99.3 1.1E-12 3.7E-17 124.1 3.6 100 158-292 89-201 (312)
74 2iw3_A Elongation factor 3A; a 99.3 1.7E-13 5.7E-18 146.4 -2.8 121 139-294 440-575 (986)
75 2qnr_A Septin-2, protein NEDD5 99.3 2.8E-12 9.5E-17 120.5 5.3 115 139-279 3-126 (301)
76 1mky_A Probable GTP-binding pr 99.2 4.6E-11 1.6E-15 117.6 13.2 108 72-183 77-204 (439)
77 1tf7_A KAIC; homohexamer, hexa 99.2 2.1E-12 7.3E-17 129.9 1.3 144 146-311 24-175 (525)
78 4aby_A DNA repair protein RECN 99.2 2.7E-13 9.3E-18 131.6 -5.1 41 267-308 296-344 (415)
79 1ye8_A Protein THEP1, hypothet 99.2 2.1E-12 7.2E-17 112.4 -1.3 99 161-293 2-107 (178)
80 2hjg_A GTP-binding protein ENG 99.2 6.4E-11 2.2E-15 116.4 9.1 106 71-182 77-198 (436)
81 2qag_C Septin-7; cell cycle, c 99.1 2E-11 6.9E-16 119.8 5.1 130 135-294 12-148 (418)
82 2dpy_A FLII, flagellum-specifi 99.1 9E-12 3.1E-16 123.0 2.0 153 135-307 132-294 (438)
83 3ux8_A Excinuclease ABC, A sub 99.1 1E-11 3.4E-16 128.5 0.6 34 147-180 335-369 (670)
84 1htw_A HI0065; nucleotide-bind 99.1 1.6E-11 5.5E-16 105.0 1.7 57 141-210 14-71 (158)
85 4gp7_A Metallophosphoesterase; 99.1 6.7E-13 2.3E-17 114.2 -7.8 28 267-295 84-111 (171)
86 2f1r_A Molybdopterin-guanine d 99.1 4.3E-12 1.5E-16 109.9 -2.9 111 160-288 3-124 (171)
87 2qm8_A GTPase/ATPase; G protei 99.1 1.5E-11 5.2E-16 117.3 -0.4 66 135-212 30-96 (337)
88 2i3b_A HCR-ntpase, human cance 99.0 1.2E-10 4.2E-15 102.2 2.8 107 159-293 1-113 (189)
89 2jeo_A Uridine-cytidine kinase 99.0 2.8E-10 9.6E-15 103.0 5.2 40 142-181 7-47 (245)
90 1p9r_A General secretion pathw 99.0 1E-10 3.4E-15 114.8 2.0 60 138-210 147-206 (418)
91 2eyu_A Twitching motility prot 99.0 1.4E-10 4.7E-15 106.9 2.8 52 148-212 15-67 (261)
92 4dcu_A GTP-binding protein ENG 99.0 1.2E-09 4E-14 108.0 9.6 107 71-182 97-218 (456)
93 3b9q_A Chloroplast SRP recepto 99.0 2.4E-11 8.1E-16 114.4 -3.1 121 153-292 93-228 (302)
94 1rj9_A FTSY, signal recognitio 98.9 1.4E-10 4.7E-15 109.3 1.1 108 158-294 101-231 (304)
95 2qag_B Septin-6, protein NEDD5 98.9 1.3E-09 4.3E-14 107.1 7.4 80 141-246 22-108 (427)
96 2gza_A Type IV secretion syste 98.9 1.4E-09 4.9E-14 104.5 7.4 78 136-232 137-230 (361)
97 2og2_A Putative signal recogni 98.8 1.4E-10 4.7E-15 111.7 -2.8 121 153-292 150-285 (359)
98 1ah9_A IF1, initiation factor 98.8 5.8E-09 2E-13 77.4 5.9 59 1-60 8-67 (71)
99 2vf7_A UVRA2, excinuclease ABC 98.8 1.9E-10 6.5E-15 121.5 -3.8 34 148-181 511-546 (842)
100 2x8a_A Nuclear valosin-contain 98.8 2.6E-10 8.8E-15 105.6 -3.3 123 144-288 30-158 (274)
101 3pih_A Uvrabc system protein A 98.7 1.6E-09 5.4E-14 115.4 1.6 45 266-311 805-858 (916)
102 1nij_A Hypothetical protein YJ 98.7 6.6E-10 2.3E-14 104.9 -1.3 136 160-307 5-176 (318)
103 3euj_A Chromosome partition pr 98.7 1.1E-09 3.9E-14 109.1 -0.1 56 146-213 16-71 (483)
104 2obl_A ESCN; ATPase, hydrolase 98.7 5.8E-09 2E-13 99.9 4.0 145 138-307 49-207 (347)
105 2r6f_A Excinuclease ABC subuni 98.7 3.3E-10 1.1E-14 120.5 -5.2 33 148-180 638-671 (972)
106 2ygr_A Uvrabc system protein A 98.7 6.1E-10 2.1E-14 118.9 -3.6 33 148-180 656-689 (993)
107 1hr0_W Translation initiation 98.7 6E-09 2.1E-13 77.3 2.6 59 1-60 9-68 (71)
108 1pui_A ENGB, probable GTP-bind 98.7 7.7E-09 2.6E-13 90.0 3.7 42 137-181 6-48 (210)
109 3szr_A Interferon-induced GTP- 98.7 1.3E-08 4.6E-13 104.2 5.9 58 161-232 47-105 (608)
110 1udx_A The GTP-binding protein 98.6 9.7E-09 3.3E-13 100.7 3.5 112 151-291 148-276 (416)
111 1lw7_A Transcriptional regulat 98.6 5.2E-10 1.8E-14 107.3 -6.7 35 159-205 170-208 (365)
112 1e69_A Chromosome segregation 98.6 6.2E-09 2.1E-13 98.1 0.5 43 265-307 218-269 (322)
113 1znw_A Guanylate kinase, GMP k 98.6 1.7E-08 5.8E-13 88.8 2.2 32 148-181 10-42 (207)
114 1sq5_A Pantothenate kinase; P- 98.6 1.9E-08 6.6E-13 94.3 2.6 61 135-209 38-123 (308)
115 3i4o_A Translation initiation 98.6 5.5E-08 1.9E-12 73.4 4.5 59 1-60 16-75 (79)
116 2oqk_A Putative translation in 98.5 4.5E-08 1.5E-12 79.5 4.3 65 1-67 34-99 (117)
117 2ehv_A Hypothetical protein PH 98.5 1.4E-08 4.9E-13 90.5 1.1 41 158-208 29-69 (251)
118 2e87_A Hypothetical protein PH 98.5 1.8E-08 6.3E-13 96.2 1.2 76 106-181 87-189 (357)
119 3asz_A Uridine kinase; cytidin 98.5 4.1E-08 1.4E-12 86.0 2.3 24 158-181 5-28 (211)
120 1s96_A Guanylate kinase, GMP k 98.4 6.8E-08 2.3E-12 86.5 3.1 40 158-209 15-56 (219)
121 1zp6_A Hypothetical protein AT 98.4 9.3E-08 3.2E-12 82.1 3.7 40 158-211 8-47 (191)
122 2oap_1 GSPE-2, type II secreti 98.4 1.3E-07 4.3E-12 95.0 5.1 50 147-208 247-297 (511)
123 3jvv_A Twitching mobility prot 98.4 7.7E-08 2.6E-12 92.4 3.1 45 149-206 114-159 (356)
124 1lvg_A Guanylate kinase, GMP k 98.4 6.3E-08 2.2E-12 84.9 2.2 24 158-181 3-26 (198)
125 3lnc_A Guanylate kinase, GMP k 98.4 6.9E-08 2.4E-12 86.1 2.3 35 147-181 14-50 (231)
126 3e70_C DPA, signal recognition 98.4 7.6E-08 2.6E-12 91.4 2.6 43 158-212 128-170 (328)
127 3tr0_A Guanylate kinase, GMP k 98.4 8.3E-08 2.8E-12 83.3 2.4 24 158-181 6-29 (205)
128 1ixz_A ATP-dependent metallopr 98.4 3.3E-09 1.1E-13 95.9 -7.0 122 145-288 36-166 (254)
129 1iy2_A ATP-dependent metallopr 98.4 7.5E-09 2.6E-13 95.1 -5.2 122 145-288 60-190 (278)
130 2yhs_A FTSY, cell division pro 98.4 5.8E-08 2E-12 96.9 0.8 64 158-233 292-356 (503)
131 1qhl_A Protein (cell division 98.4 1.5E-08 5E-13 91.6 -3.4 61 160-232 28-91 (227)
132 3a00_A Guanylate kinase, GMP k 98.3 1.3E-07 4.6E-12 81.6 2.5 23 159-181 1-23 (186)
133 3c8u_A Fructokinase; YP_612366 98.3 1.3E-07 4.4E-12 83.2 1.8 40 158-209 21-63 (208)
134 1tf7_A KAIC; homohexamer, hexa 98.3 6.3E-08 2.2E-12 97.2 -1.6 24 158-181 280-303 (525)
135 4a74_A DNA repair and recombin 98.3 4E-07 1.4E-11 80.0 3.6 24 158-181 24-47 (231)
136 3pqc_A Probable GTP-binding pr 98.3 1.6E-06 5.5E-11 73.6 7.2 58 160-246 24-81 (195)
137 1ewq_A DNA mismatch repair pro 98.3 1.3E-07 4.6E-12 99.1 0.5 111 148-309 567-686 (765)
138 3qf7_A RAD50; ABC-ATPase, ATPa 98.3 2.6E-07 8.9E-12 88.8 2.4 44 266-309 279-333 (365)
139 1svi_A GTP-binding protein YSX 98.2 1.4E-06 4.9E-11 74.2 6.7 61 159-247 23-83 (195)
140 3t34_A Dynamin-related protein 98.2 8.3E-07 2.8E-11 84.7 5.5 45 147-203 24-68 (360)
141 3uie_A Adenylyl-sulfate kinase 98.2 3.2E-07 1.1E-11 80.0 2.3 53 145-210 10-65 (200)
142 1cr0_A DNA primase/helicase; R 98.2 4.4E-07 1.5E-11 83.8 3.1 48 148-207 23-72 (296)
143 2ewv_A Twitching motility prot 98.2 3.7E-07 1.3E-11 88.0 2.3 48 149-209 127-175 (372)
144 2o8b_B DNA mismatch repair pro 98.2 7.9E-08 2.7E-12 103.7 -2.9 41 140-181 761-810 (1022)
145 1ega_A Protein (GTP-binding pr 98.2 1.3E-06 4.6E-11 81.5 5.5 25 158-182 7-31 (301)
146 4dhe_A Probable GTP-binding pr 98.2 1.9E-06 6.4E-11 75.3 5.9 24 159-182 29-52 (223)
147 2bbw_A Adenylate kinase 4, AK4 98.2 4.4E-07 1.5E-11 81.7 1.8 39 158-208 26-67 (246)
148 1kgd_A CASK, peripheral plasma 98.2 7.2E-07 2.5E-11 76.6 3.0 25 157-181 3-27 (180)
149 3nwj_A ATSK2; P loop, shikimat 98.2 6.6E-07 2.2E-11 81.8 2.8 47 135-181 18-70 (250)
150 4e22_A Cytidylate kinase; P-lo 98.1 5.8E-07 2E-11 81.7 2.1 41 158-210 26-77 (252)
151 1in4_A RUVB, holliday junction 98.1 2.8E-07 9.5E-12 87.2 -0.1 84 136-232 20-111 (334)
152 3k1j_A LON protease, ATP-depen 98.1 1.7E-06 5.8E-11 88.3 5.6 55 143-209 43-99 (604)
153 3iev_A GTP-binding protein ERA 98.1 2.7E-06 9.4E-11 79.6 6.0 23 160-182 11-33 (308)
154 2bdt_A BH3686; alpha-beta prot 98.1 6.7E-07 2.3E-11 76.9 1.3 37 159-210 2-38 (189)
155 1oix_A RAS-related protein RAB 98.1 1.7E-06 5.7E-11 74.6 3.7 22 161-182 31-52 (191)
156 2gj8_A MNME, tRNA modification 98.1 4.4E-06 1.5E-10 70.7 5.8 25 158-182 3-27 (172)
157 3ney_A 55 kDa erythrocyte memb 98.1 1.7E-06 5.9E-11 76.3 3.3 25 157-181 17-41 (197)
158 3thx_A DNA mismatch repair pro 98.0 1E-06 3.5E-11 94.2 1.9 33 148-180 650-683 (934)
159 4eun_A Thermoresistant glucoki 98.0 1.6E-06 5.6E-11 75.4 2.9 37 158-210 28-64 (200)
160 3thx_B DNA mismatch repair pro 98.0 2.9E-07 1E-11 98.1 -2.7 34 148-181 661-695 (918)
161 2wji_A Ferrous iron transport 98.0 5E-06 1.7E-10 69.6 5.4 23 160-182 4-26 (165)
162 1wf3_A GTP-binding protein; GT 98.0 6.1E-06 2.1E-10 77.1 6.4 23 160-182 8-30 (301)
163 1odf_A YGR205W, hypothetical 3 98.0 1.2E-06 4E-11 81.7 1.5 24 158-181 30-53 (290)
164 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.7E-06 5.7E-11 75.8 2.2 49 148-208 10-60 (235)
165 3k53_A Ferrous iron transport 98.0 1E-05 3.5E-10 73.8 7.2 23 160-182 4-26 (271)
166 2j41_A Guanylate kinase; GMP, 98.0 2.8E-06 9.5E-11 73.5 3.2 24 158-181 5-28 (207)
167 2wjg_A FEOB, ferrous iron tran 98.0 1.3E-05 4.4E-10 67.8 7.3 22 160-181 8-29 (188)
168 3lxx_A GTPase IMAP family memb 98.0 5.8E-06 2E-10 73.8 5.3 23 160-182 30-52 (239)
169 3lxw_A GTPase IMAP family memb 98.0 6.6E-06 2.3E-10 74.4 5.5 25 159-183 21-45 (247)
170 2f9l_A RAB11B, member RAS onco 98.0 3.4E-06 1.2E-10 72.8 3.3 22 161-182 7-28 (199)
171 3iby_A Ferrous iron transport 98.0 1.2E-05 4.2E-10 73.2 7.2 22 161-182 3-24 (256)
172 1ko7_A HPR kinase/phosphatase; 97.9 1.4E-05 4.7E-10 75.4 7.5 98 74-182 53-167 (314)
173 3tqc_A Pantothenate kinase; bi 97.9 2E-06 7E-11 81.3 1.7 43 139-181 65-114 (321)
174 3t5d_A Septin-7; GTP-binding p 97.9 1.6E-05 5.4E-10 72.8 7.6 23 161-183 10-32 (274)
175 4a9a_A Ribosome-interacting GT 97.9 5.8E-06 2E-10 79.9 4.7 22 161-182 74-95 (376)
176 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 6.2E-06 2.1E-10 80.1 5.0 52 158-209 19-70 (392)
177 2vp4_A Deoxynucleoside kinase; 97.9 3.6E-06 1.2E-10 75.1 3.0 38 158-211 19-56 (230)
178 2qag_A Septin-2, protein NEDD5 97.9 2.1E-06 7.3E-11 82.2 1.5 43 135-182 18-60 (361)
179 1rz3_A Hypothetical protein rb 97.9 3.5E-06 1.2E-10 73.6 2.3 40 158-209 21-60 (201)
180 3kta_A Chromosome segregation 97.9 6.1E-06 2.1E-10 70.2 3.3 30 152-181 19-48 (182)
181 3i8s_A Ferrous iron transport 97.9 2.1E-05 7.4E-10 72.1 7.2 23 160-182 4-26 (274)
182 2www_A Methylmalonic aciduria 97.9 4.2E-06 1.4E-10 79.8 2.3 40 159-210 74-113 (349)
183 3a1s_A Iron(II) transport prot 97.8 3E-05 1E-09 70.6 7.3 22 161-182 7-28 (258)
184 1m2o_B GTP-binding protein SAR 97.8 1.6E-05 5.3E-10 68.2 5.1 34 149-182 13-46 (190)
185 1h65_A Chloroplast outer envel 97.8 1.2E-05 4E-10 73.4 4.5 23 160-182 40-62 (270)
186 3vaa_A Shikimate kinase, SK; s 97.8 8.5E-06 2.9E-10 70.8 3.4 36 146-181 11-47 (199)
187 1z0j_A RAB-22, RAS-related pro 97.8 2.3E-05 7.9E-10 64.6 5.8 22 161-182 8-29 (170)
188 2p67_A LAO/AO transport system 97.8 5.6E-06 1.9E-10 78.6 2.2 54 142-207 38-92 (341)
189 3tau_A Guanylate kinase, GMP k 97.8 8.5E-06 2.9E-10 71.5 3.3 24 158-181 7-30 (208)
190 2kjq_A DNAA-related protein; s 97.8 5.7E-06 1.9E-10 69.3 2.0 24 158-181 35-58 (149)
191 1knq_A Gluconate kinase; ALFA/ 97.8 7.1E-06 2.4E-10 69.4 2.6 24 158-181 7-30 (175)
192 2nzj_A GTP-binding protein REM 97.8 2.3E-05 7.7E-10 65.1 5.6 22 161-182 6-27 (175)
193 1f6b_A SAR1; gtpases, N-termin 97.8 1.3E-05 4.3E-10 69.4 4.1 35 148-182 14-48 (198)
194 3def_A T7I23.11 protein; chlor 97.8 1.4E-05 4.7E-10 72.7 4.5 23 160-182 37-59 (262)
195 1f5n_A Interferon-induced guan 97.8 1.4E-05 4.6E-10 81.6 4.7 24 159-182 38-61 (592)
196 1n0w_A DNA repair protein RAD5 97.8 1.2E-05 4E-10 71.1 3.7 41 158-208 23-68 (243)
197 2ohf_A Protein OLA1, GTP-bindi 97.8 1.1E-05 3.7E-10 78.5 3.6 51 158-209 21-71 (396)
198 2xtp_A GTPase IMAP family memb 97.8 2.6E-05 9E-10 70.3 6.0 24 159-182 22-45 (260)
199 1ek0_A Protein (GTP-binding pr 97.8 2.9E-05 9.8E-10 63.9 5.8 22 161-182 5-26 (170)
200 3b1v_A Ferrous iron uptake tra 97.8 2.3E-05 7.8E-10 72.2 5.6 23 160-182 4-26 (272)
201 4dcu_A GTP-binding protein ENG 97.8 1.9E-05 6.5E-10 77.7 5.2 23 159-181 23-45 (456)
202 3q72_A GTP-binding protein RAD 97.8 2.7E-05 9.1E-10 64.2 5.4 22 161-182 4-25 (166)
203 1wms_A RAB-9, RAB9, RAS-relate 97.8 3.3E-05 1.1E-09 64.4 5.8 22 161-182 9-30 (177)
204 3tw8_B RAS-related protein RAB 97.8 4E-05 1.4E-09 63.8 6.4 22 161-182 11-32 (181)
205 1kao_A RAP2A; GTP-binding prot 97.7 4E-05 1.4E-09 62.7 6.1 22 160-181 4-25 (167)
206 3ec2_A DNA replication protein 97.7 7.2E-06 2.5E-10 69.8 1.4 24 158-181 37-60 (180)
207 1pzn_A RAD51, DNA repair and r 97.7 1.5E-05 5E-10 76.1 3.6 50 148-209 118-176 (349)
208 1r2q_A RAS-related protein RAB 97.7 4.4E-05 1.5E-09 62.8 5.8 21 161-181 8-28 (170)
209 1jal_A YCHF protein; nucleotid 97.7 5.2E-05 1.8E-09 72.9 7.0 78 159-246 2-79 (363)
210 2hjg_A GTP-binding protein ENG 97.7 2.5E-05 8.5E-10 76.4 4.9 21 161-181 5-25 (436)
211 1z2a_A RAS-related protein RAB 97.7 3.8E-05 1.3E-09 63.2 5.2 22 161-182 7-28 (168)
212 2fg5_A RAB-22B, RAS-related pr 97.7 4.4E-05 1.5E-09 65.2 5.7 23 160-182 24-46 (192)
213 2cxx_A Probable GTP-binding pr 97.7 2.5E-05 8.6E-10 65.9 4.1 22 161-182 3-24 (190)
214 2erx_A GTP-binding protein DI- 97.7 6.9E-05 2.4E-09 61.7 6.8 22 161-182 5-26 (172)
215 3t5g_A GTP-binding protein RHE 97.7 1.6E-05 5.6E-10 66.7 2.9 104 70-174 71-180 (181)
216 1jwy_B Dynamin A GTPase domain 97.7 4E-05 1.4E-09 70.8 5.6 24 160-183 25-48 (315)
217 1u8z_A RAS-related protein RAL 97.7 5.5E-05 1.9E-09 61.9 5.8 23 160-182 5-27 (168)
218 4dsu_A GTPase KRAS, isoform 2B 97.7 5.2E-05 1.8E-09 63.7 5.7 22 161-182 6-27 (189)
219 2dyk_A GTP-binding protein; GT 97.7 2.6E-05 9.1E-10 63.8 3.8 22 161-182 3-24 (161)
220 1c1y_A RAS-related protein RAP 97.7 7.5E-05 2.6E-09 61.3 6.6 22 161-182 5-26 (167)
221 1z08_A RAS-related protein RAB 97.7 6E-05 2.1E-09 62.2 6.0 22 161-182 8-29 (170)
222 1cke_A CK, MSSA, protein (cyti 97.7 7.8E-06 2.7E-10 71.9 0.5 37 159-204 5-41 (227)
223 1x3s_A RAS-related protein RAB 97.7 1.8E-05 6.2E-10 67.1 2.8 103 71-174 82-194 (195)
224 1ls1_A Signal recognition part 97.7 3.4E-06 1.2E-10 78.7 -2.0 46 152-210 92-137 (295)
225 1z0f_A RAB14, member RAS oncog 97.7 5.3E-05 1.8E-09 63.0 5.6 23 160-182 16-38 (179)
226 3t5g_A GTP-binding protein RHE 97.6 6.4E-05 2.2E-09 63.0 6.1 21 161-181 8-28 (181)
227 1g16_A RAS-related protein SEC 97.6 4.2E-05 1.4E-09 63.0 4.8 22 161-182 5-26 (170)
228 1zbd_A Rabphilin-3A; G protein 97.6 7.7E-05 2.6E-09 63.9 6.6 22 161-182 10-31 (203)
229 2ce2_X GTPase HRAS; signaling 97.6 7.3E-05 2.5E-09 60.9 6.1 22 161-182 5-26 (166)
230 1vma_A Cell division protein F 97.6 1.6E-05 5.3E-10 74.7 2.2 41 158-210 103-143 (306)
231 2oil_A CATX-8, RAS-related pro 97.6 6.9E-05 2.4E-09 63.7 6.1 22 161-182 27-48 (193)
232 2qu8_A Putative nucleolar GTP- 97.6 7.4E-05 2.5E-09 65.8 6.5 24 159-182 29-52 (228)
233 3cr8_A Sulfate adenylyltranfer 97.6 1E-05 3.4E-10 82.0 0.8 41 158-210 368-410 (552)
234 2y8e_A RAB-protein 6, GH09086P 97.6 6.5E-05 2.2E-09 62.4 5.7 22 160-181 15-36 (179)
235 2qtf_A Protein HFLX, GTP-bindi 97.6 3.2E-05 1.1E-09 74.2 4.3 22 161-182 181-202 (364)
236 2px0_A Flagellar biosynthesis 97.6 1.9E-05 6.4E-10 73.7 2.5 40 158-209 104-144 (296)
237 2il1_A RAB12; G-protein, GDP, 97.6 7.6E-05 2.6E-09 63.8 6.1 22 161-182 28-49 (192)
238 3clv_A RAB5 protein, putative; 97.6 6.2E-05 2.1E-09 63.6 5.4 23 160-182 8-30 (208)
239 3tkl_A RAS-related protein RAB 97.6 7.1E-05 2.4E-09 63.5 5.8 22 161-182 18-39 (196)
240 3q85_A GTP-binding protein REM 97.6 3.7E-05 1.3E-09 63.5 3.8 21 161-181 4-24 (169)
241 1fzq_A ADP-ribosylation factor 97.6 5.4E-05 1.8E-09 64.2 4.8 24 159-182 16-39 (181)
242 2gf9_A RAS-related protein RAB 97.6 8.2E-05 2.8E-09 63.1 5.9 22 161-182 24-45 (189)
243 2bov_A RAla, RAS-related prote 97.6 8.7E-05 3E-09 63.4 6.1 23 160-182 15-37 (206)
244 1x3s_A RAS-related protein RAB 97.6 7.8E-05 2.7E-09 63.0 5.8 23 160-182 16-38 (195)
245 2fn4_A P23, RAS-related protei 97.6 9.4E-05 3.2E-09 61.5 6.0 23 160-182 10-32 (181)
246 3m6a_A ATP-dependent protease 97.6 1.4E-05 4.8E-10 80.6 1.0 62 135-208 84-145 (543)
247 2bme_A RAB4A, RAS-related prot 97.6 7.2E-05 2.5E-09 62.9 5.3 22 161-182 12-33 (186)
248 2bcg_Y Protein YP2, GTP-bindin 97.6 8.3E-05 2.8E-09 64.0 5.8 22 161-182 10-31 (206)
249 1sxj_E Activator 1 40 kDa subu 97.6 2.5E-05 8.5E-10 73.3 2.5 55 145-210 18-76 (354)
250 3gee_A MNME, tRNA modification 97.6 3E-05 1E-09 77.0 3.2 25 158-182 232-256 (476)
251 2a9k_A RAS-related protein RAL 97.6 0.00011 3.6E-09 61.5 6.1 23 160-182 19-41 (187)
252 2efe_B Small GTP-binding prote 97.6 8.2E-05 2.8E-09 62.1 5.4 23 160-182 13-35 (181)
253 1svm_A Large T antigen; AAA+ f 97.5 4E-05 1.4E-09 74.0 3.8 35 147-181 156-191 (377)
254 1vg8_A RAS-related protein RAB 97.5 9.1E-05 3.1E-09 63.5 5.8 23 160-182 9-31 (207)
255 1zu4_A FTSY; GTPase, signal re 97.5 1.2E-05 4.1E-10 75.9 0.1 47 153-211 98-145 (320)
256 1mky_A Probable GTP-binding pr 97.5 3.6E-05 1.2E-09 75.3 3.5 22 161-182 3-24 (439)
257 1z06_A RAS-related protein RAB 97.5 9E-05 3.1E-09 62.9 5.6 22 160-181 21-42 (189)
258 3bc1_A RAS-related protein RAB 97.5 0.00012 4.1E-09 61.5 6.4 22 161-182 13-34 (195)
259 1kag_A SKI, shikimate kinase I 97.5 2.7E-05 9.3E-10 65.4 2.3 23 159-181 4-26 (173)
260 2dhr_A FTSH; AAA+ protein, hex 97.5 1.1E-05 3.6E-10 80.8 -0.4 119 148-288 54-181 (499)
261 4djt_A GTP-binding nuclear pro 97.5 7.8E-05 2.7E-09 64.8 5.2 22 160-181 12-33 (218)
262 2g6b_A RAS-related protein RAB 97.5 0.00012 4E-09 61.1 6.1 23 160-182 11-33 (180)
263 3cph_A RAS-related protein SEC 97.5 8.9E-05 3.1E-09 63.8 5.5 24 159-182 20-43 (213)
264 1ksh_A ARF-like protein 2; sma 97.5 0.00011 3.9E-09 61.9 5.8 24 159-182 18-41 (186)
265 3con_A GTPase NRAS; structural 97.5 0.00012 4.2E-09 61.9 5.7 23 160-182 22-44 (190)
266 1upt_A ARL1, ADP-ribosylation 97.5 8.2E-05 2.8E-09 61.4 4.4 22 160-181 8-29 (171)
267 1ky3_A GTP-binding protein YPT 97.5 6.5E-05 2.2E-09 62.6 3.7 23 160-182 9-31 (182)
268 2pez_A Bifunctional 3'-phospho 97.5 2.7E-05 9.2E-10 66.2 1.3 24 158-181 4-27 (179)
269 2a5j_A RAS-related protein RAB 97.5 9.7E-05 3.3E-09 62.9 4.8 22 161-182 23-44 (191)
270 2p5s_A RAS and EF-hand domain 97.5 9.1E-05 3.1E-09 63.6 4.7 24 159-182 28-51 (199)
271 2o52_A RAS-related protein RAB 97.5 0.00012 4.1E-09 63.1 5.3 23 160-182 26-48 (200)
272 1moz_A ARL1, ADP-ribosylation 97.4 8.3E-05 2.8E-09 62.3 4.1 23 159-181 18-40 (183)
273 2lkc_A Translation initiation 97.4 7.7E-05 2.6E-09 62.1 3.8 25 158-182 7-31 (178)
274 2gf0_A GTP-binding protein DI- 97.4 0.00015 5.2E-09 61.5 5.7 22 160-181 9-30 (199)
275 2ged_A SR-beta, signal recogni 97.4 6.1E-05 2.1E-09 63.9 3.1 24 159-182 48-71 (193)
276 3oes_A GTPase rhebl1; small GT 97.4 0.00013 4.5E-09 62.6 5.3 24 159-182 24-47 (201)
277 3kkq_A RAS-related protein M-R 97.4 0.00017 5.7E-09 60.6 5.8 23 160-182 19-41 (183)
278 2qpt_A EH domain-containing pr 97.4 0.00011 3.7E-09 74.3 5.4 24 160-183 66-89 (550)
279 2fh5_B SR-beta, signal recogni 97.4 0.00015 5.2E-09 62.7 5.5 22 160-181 8-29 (214)
280 4bas_A ADP-ribosylation factor 97.4 0.00017 5.9E-09 61.2 5.8 24 159-182 17-40 (199)
281 2hxs_A RAB-26, RAS-related pro 97.4 0.0001 3.4E-09 61.4 4.1 21 161-181 8-28 (178)
282 3gj0_A GTP-binding nuclear pro 97.4 8.2E-05 2.8E-09 64.9 3.5 54 161-242 17-73 (221)
283 1r8s_A ADP-ribosylation factor 97.4 0.00011 3.9E-09 60.2 4.2 21 161-181 2-22 (164)
284 2qor_A Guanylate kinase; phosp 97.4 6.8E-05 2.3E-09 65.2 3.0 24 158-181 11-34 (204)
285 2ew1_A RAS-related protein RAB 97.4 0.00018 6.3E-09 62.4 5.7 22 160-181 27-48 (201)
286 2h57_A ADP-ribosylation factor 97.4 0.0002 7E-09 60.7 5.8 23 159-181 21-43 (190)
287 2dy1_A Elongation factor G; tr 97.4 0.0001 3.4E-09 76.2 4.5 77 158-245 8-86 (665)
288 1mh1_A RAC1; GTP-binding, GTPa 97.4 0.00018 6.2E-09 60.1 5.4 21 161-181 7-27 (186)
289 2zej_A Dardarin, leucine-rich 97.3 9.4E-05 3.2E-09 62.8 3.2 21 161-181 4-24 (184)
290 3lda_A DNA repair protein RAD5 97.3 0.00015 5.1E-09 70.5 5.0 39 158-208 177-222 (400)
291 2x2e_A Dynamin-1; nitration, h 97.3 0.00033 1.1E-08 66.4 7.3 25 159-183 31-55 (353)
292 1m7g_A Adenylylsulfate kinase; 97.3 5.4E-05 1.8E-09 66.3 1.7 40 158-209 24-65 (211)
293 1zd9_A ADP-ribosylation factor 97.3 0.00018 6E-09 61.2 4.9 23 160-182 23-45 (188)
294 3ihw_A Centg3; RAS, centaurin, 97.3 0.00016 5.6E-09 61.5 4.6 22 160-181 21-42 (184)
295 2atv_A RERG, RAS-like estrogen 97.3 0.00028 9.4E-09 60.2 6.1 56 161-245 30-88 (196)
296 2q3h_A RAS homolog gene family 97.3 0.00033 1.1E-08 59.8 6.4 24 159-182 20-43 (201)
297 3reg_A RHO-like small GTPase; 97.3 0.00019 6.6E-09 61.0 4.9 23 160-182 24-46 (194)
298 3cpj_B GTP-binding protein YPT 97.3 0.0002 7E-09 62.6 5.1 22 161-182 15-36 (223)
299 1wxq_A GTP-binding protein; st 97.3 0.00015 5.3E-09 70.3 4.7 22 161-182 2-23 (397)
300 2cvh_A DNA repair and recombin 97.3 0.00012 4E-09 63.6 3.4 34 148-181 7-42 (220)
301 2fv8_A H6, RHO-related GTP-bin 97.3 0.00023 7.7E-09 61.5 5.2 24 159-182 25-48 (207)
302 3geh_A MNME, tRNA modification 97.3 4.8E-05 1.7E-09 75.3 1.0 25 158-182 223-247 (462)
303 2fu5_C RAS-related protein RAB 97.3 0.00013 4.5E-09 61.2 3.5 21 161-181 10-30 (183)
304 3dz8_A RAS-related protein RAB 97.3 8E-05 2.7E-09 63.4 2.2 22 160-181 24-45 (191)
305 2j1l_A RHO-related GTP-binding 97.3 0.00031 1.1E-08 61.2 5.9 23 160-182 35-57 (214)
306 2x77_A ADP-ribosylation factor 97.3 0.0002 6.8E-09 60.6 4.6 23 159-181 22-44 (189)
307 2qt1_A Nicotinamide riboside k 97.3 0.00012 4.1E-09 63.6 3.2 24 158-181 20-43 (207)
308 2iwr_A Centaurin gamma 1; ANK 97.3 0.00012 4.1E-09 61.1 3.1 55 161-242 9-63 (178)
309 2f7s_A C25KG, RAS-related prot 97.3 0.00024 8.3E-09 61.5 5.1 54 161-242 27-93 (217)
310 1m7b_A RND3/RHOE small GTP-bin 97.3 0.00031 1.1E-08 59.3 5.6 22 161-182 9-30 (184)
311 2j69_A Bacterial dynamin-like 97.3 0.00016 5.5E-09 75.0 4.4 26 158-183 68-93 (695)
312 2h17_A ADP-ribosylation factor 97.3 0.00017 5.9E-09 60.7 3.9 24 159-182 21-44 (181)
313 1nrj_B SR-beta, signal recogni 97.2 0.00013 4.5E-09 63.3 2.9 23 160-182 13-35 (218)
314 1zj6_A ADP-ribosylation factor 97.2 0.00031 1E-08 59.4 5.2 24 158-181 15-38 (187)
315 4gzl_A RAS-related C3 botulinu 97.2 0.00028 9.7E-09 60.9 4.9 24 158-181 29-52 (204)
316 2yc2_C IFT27, small RAB-relate 97.2 0.00012 4.3E-09 62.4 2.6 23 160-182 21-43 (208)
317 2b6h_A ADP-ribosylation factor 97.2 0.00033 1.1E-08 59.9 5.3 24 158-181 28-51 (192)
318 3c5c_A RAS-like protein 12; GD 97.2 0.00038 1.3E-08 59.1 5.5 23 160-182 22-44 (187)
319 2hup_A RAS-related protein RAB 97.2 0.0003 1E-08 60.7 4.7 22 160-181 30-51 (201)
320 3l0i_B RAS-related protein RAB 97.2 8.4E-05 2.9E-09 63.8 1.0 23 160-182 34-56 (199)
321 1lnz_A SPO0B-associated GTP-bi 97.2 0.00014 4.9E-09 69.1 2.7 54 162-243 161-216 (342)
322 2gco_A H9, RHO-related GTP-bin 97.2 0.00029 1E-08 60.5 4.4 23 160-182 26-48 (201)
323 1sxj_C Activator 1 40 kDa subu 97.2 0.00017 5.6E-09 67.8 3.0 40 142-181 26-68 (340)
324 1wb9_A DNA mismatch repair pro 97.1 6E-05 2.1E-09 79.4 -0.2 33 149-181 597-629 (800)
325 1jjv_A Dephospho-COA kinase; P 97.1 0.0002 6.9E-09 62.0 3.2 21 161-181 4-24 (206)
326 1xzp_A Probable tRNA modificat 97.1 4.7E-05 1.6E-09 75.8 -1.1 24 159-182 243-266 (482)
327 4bas_A ADP-ribosylation factor 97.1 0.0015 5E-08 55.3 8.4 88 68-156 78-182 (199)
328 2h17_A ADP-ribosylation factor 97.1 0.0018 6.3E-08 54.3 8.8 88 68-156 80-176 (181)
329 3llu_A RAS-related GTP-binding 97.1 0.00037 1.3E-08 59.6 4.5 24 159-182 20-43 (196)
330 3tkl_A RAS-related protein RAB 97.1 0.00031 1E-08 59.4 3.9 102 72-174 84-194 (196)
331 3r7w_A Gtpase1, GTP-binding pr 97.1 0.00028 9.4E-09 65.7 3.9 23 160-182 4-26 (307)
332 1gwn_A RHO-related GTP-binding 97.1 0.00055 1.9E-08 59.4 5.6 23 160-182 29-51 (205)
333 2atx_A Small GTP binding prote 97.1 0.00054 1.8E-08 58.1 5.4 23 160-182 19-41 (194)
334 1d7q_A Translation initiation 97.1 0.001 3.5E-08 55.4 6.6 65 1-66 33-97 (143)
335 2j0v_A RAC-like GTP-binding pr 97.1 0.00057 2E-08 58.9 5.4 23 160-182 10-32 (212)
336 1jt8_A EIF-1A, probable transl 97.1 0.00035 1.2E-08 55.0 3.6 65 1-66 22-87 (102)
337 2g6b_A RAS-related protein RAB 97.0 0.00097 3.3E-08 55.4 6.3 87 69-156 76-167 (180)
338 2yvu_A Probable adenylyl-sulfa 97.0 0.00023 7.8E-09 60.7 2.4 24 158-181 12-35 (186)
339 1w1w_A Structural maintenance 97.0 0.00025 8.5E-09 69.1 2.9 24 158-181 25-48 (430)
340 2if2_A Dephospho-COA kinase; a 97.0 0.00024 8.3E-09 61.3 2.5 21 161-181 3-23 (204)
341 1zj6_A ADP-ribosylation factor 97.0 0.0028 9.6E-08 53.3 9.1 85 71-156 78-171 (187)
342 4eaq_A DTMP kinase, thymidylat 97.0 0.00029 9.8E-09 63.0 2.8 32 150-181 13-48 (229)
343 3q3j_B RHO-related GTP-binding 97.0 0.00075 2.6E-08 58.8 5.4 24 159-182 27-50 (214)
344 2dgy_A MGC11102 protein; EIF-1 97.0 0.0017 5.7E-08 51.9 6.9 65 1-66 17-82 (111)
345 1upt_A ARL1, ADP-ribosylation 97.0 0.0052 1.8E-07 50.3 10.3 87 69-156 67-162 (171)
346 1nlf_A Regulatory protein REPA 97.0 0.00031 1.1E-08 64.1 2.8 24 158-181 29-52 (279)
347 2gf9_A RAS-related protein RAB 97.0 0.0013 4.5E-08 55.5 6.6 87 69-156 87-178 (189)
348 3kb2_A SPBC2 prophage-derived 96.9 0.0004 1.4E-08 57.7 3.1 21 161-181 3-23 (173)
349 1ex7_A Guanylate kinase; subst 96.9 0.00036 1.2E-08 60.7 2.7 21 161-181 3-23 (186)
350 3q5d_A Atlastin-1; G protein, 96.9 0.00046 1.6E-08 68.0 3.7 22 160-181 68-89 (447)
351 1qhx_A CPT, protein (chloramph 96.9 0.00046 1.6E-08 58.0 3.2 23 159-181 3-25 (178)
352 1j8m_F SRP54, signal recogniti 96.9 0.00018 6E-09 67.1 0.6 45 154-210 93-137 (297)
353 3cm0_A Adenylate kinase; ATP-b 96.9 0.00037 1.3E-08 59.0 2.6 24 158-181 3-26 (186)
354 3qq5_A Small GTP-binding prote 96.9 0.00026 8.7E-09 69.3 1.8 61 161-246 36-96 (423)
355 2j0v_A RAC-like GTP-binding pr 96.9 0.0024 8.1E-08 54.9 7.8 91 65-156 69-173 (212)
356 3cph_A RAS-related protein SEC 96.9 0.00068 2.3E-08 58.1 4.3 85 70-155 86-174 (213)
357 3c5h_A Glucocorticoid receptor 96.9 0.0037 1.3E-07 56.2 9.4 81 76-156 162-248 (255)
358 2x77_A ADP-ribosylation factor 96.9 0.0048 1.6E-07 51.9 9.5 87 69-156 82-177 (189)
359 3cbq_A GTP-binding protein REM 96.9 0.00044 1.5E-08 59.4 3.0 21 161-181 25-45 (195)
360 1kht_A Adenylate kinase; phosp 96.9 0.0005 1.7E-08 58.1 3.3 24 158-181 2-25 (192)
361 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00046 1.6E-08 57.5 3.0 24 157-180 21-44 (149)
362 1np6_A Molybdopterin-guanine d 96.9 0.0004 1.4E-08 59.7 2.6 22 160-181 7-28 (174)
363 1y63_A LMAJ004144AAA protein; 96.9 0.00053 1.8E-08 58.6 3.3 29 153-181 3-32 (184)
364 3t61_A Gluconokinase; PSI-biol 96.9 0.00048 1.6E-08 59.5 3.0 23 159-181 18-40 (202)
365 2atx_A Small GTP binding prote 96.9 0.004 1.4E-07 52.6 8.8 91 65-156 78-186 (194)
366 2h57_A ADP-ribosylation factor 96.9 0.0026 8.8E-08 53.7 7.5 88 68-156 82-180 (190)
367 2cjw_A GTP-binding protein GEM 96.9 0.0004 1.4E-08 59.5 2.4 21 161-181 8-28 (192)
368 1ksh_A ARF-like protein 2; sma 96.8 0.0023 7.8E-08 53.7 7.1 86 70-156 79-173 (186)
369 2o5v_A DNA replication and rep 96.8 0.00015 5.1E-09 69.5 -0.4 41 266-307 265-320 (359)
370 2fu5_C RAS-related protein RAB 96.8 0.0015 5E-08 54.6 5.9 87 69-156 73-164 (183)
371 2aka_B Dynamin-1; fusion prote 96.8 0.00049 1.7E-08 62.8 3.0 25 159-183 26-50 (299)
372 2dr3_A UPF0273 protein PH0284; 96.8 0.00042 1.4E-08 61.0 2.5 33 149-181 11-45 (247)
373 3lw7_A Adenylate kinase relate 96.8 0.00057 1.9E-08 56.4 3.1 20 160-179 2-21 (179)
374 3o47_A ADP-ribosylation factor 96.8 0.00097 3.3E-08 62.7 5.1 52 161-242 167-218 (329)
375 3ice_A Transcription terminati 96.8 0.00038 1.3E-08 67.5 2.2 30 152-181 166-196 (422)
376 2fg5_A RAB-22B, RAS-related pr 96.8 0.0018 6E-08 55.0 6.1 86 71-157 90-180 (192)
377 2efe_B Small GTP-binding prote 96.8 0.002 6.9E-08 53.5 6.3 86 70-156 78-168 (181)
378 1z08_A RAS-related protein RAB 96.8 0.0018 6E-08 53.1 5.7 87 69-156 71-162 (170)
379 3t1o_A Gliding protein MGLA; G 96.8 0.00087 3E-08 56.4 3.9 86 71-156 92-185 (198)
380 3bc1_A RAS-related protein RAB 96.8 0.0017 5.6E-08 54.4 5.6 86 70-156 87-178 (195)
381 3q72_A GTP-binding protein RAD 96.8 0.0026 8.9E-08 52.0 6.7 85 71-156 67-157 (166)
382 2y8e_A RAB-protein 6, GH09086P 96.8 0.0012 4.2E-08 54.4 4.7 86 70-156 80-170 (179)
383 3tw8_B RAS-related protein RAB 96.8 0.0028 9.4E-08 52.4 6.8 86 70-156 75-164 (181)
384 2ffh_A Protein (FFH); SRP54, s 96.7 0.00056 1.9E-08 66.9 2.6 42 158-211 97-138 (425)
385 2rhm_A Putative kinase; P-loop 96.7 0.00075 2.6E-08 57.2 3.1 24 158-181 4-27 (193)
386 1z2a_A RAS-related protein RAB 96.7 0.0016 5.4E-08 53.2 4.9 86 70-156 71-160 (168)
387 3t1o_A Gliding protein MGLA; G 96.7 0.00061 2.1E-08 57.3 2.4 23 160-182 15-37 (198)
388 2v54_A DTMP kinase, thymidylat 96.7 0.00085 2.9E-08 57.5 3.4 24 158-181 3-26 (204)
389 1z0f_A RAB14, member RAS oncog 96.7 0.0014 4.8E-08 54.1 4.6 85 71-156 82-171 (179)
390 2q3h_A RAS homolog gene family 96.7 0.0056 1.9E-07 51.9 8.5 90 65-155 80-187 (201)
391 1r2q_A RAS-related protein RAB 96.7 0.0017 5.6E-08 53.1 4.9 85 71-156 73-162 (170)
392 1r8s_A ADP-ribosylation factor 96.7 0.0031 1E-07 51.4 6.5 85 71-156 62-155 (164)
393 2nzj_A GTP-binding protein REM 96.7 0.0033 1.1E-07 51.7 6.7 84 72-156 73-162 (175)
394 2jaq_A Deoxyguanosine kinase; 96.7 0.00087 3E-08 57.2 3.1 21 161-181 2-22 (205)
395 1moz_A ARL1, ADP-ribosylation 96.7 0.0044 1.5E-07 51.5 7.5 86 70-156 79-173 (183)
396 1zbd_A Rabphilin-3A; G protein 96.6 0.0022 7.4E-08 54.7 5.6 87 69-156 73-164 (203)
397 1g16_A RAS-related protein SEC 96.6 0.0018 6.3E-08 52.9 4.9 86 70-156 69-158 (170)
398 2g3y_A GTP-binding protein GEM 96.6 0.00092 3.2E-08 58.8 3.1 23 160-182 38-60 (211)
399 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0042 1.4E-07 53.1 7.3 89 68-157 72-165 (206)
400 2plr_A DTMP kinase, probable t 96.6 0.00092 3.2E-08 57.4 3.1 24 158-181 3-26 (213)
401 3bwd_D RAC-like GTP-binding pr 96.6 0.00076 2.6E-08 56.1 2.4 24 159-182 8-31 (182)
402 1ly1_A Polynucleotide kinase; 96.6 0.00093 3.2E-08 55.8 3.0 22 160-181 3-24 (181)
403 2gco_A H9, RHO-related GTP-bin 96.6 0.0026 8.7E-08 54.5 5.7 89 67-156 87-193 (201)
404 2a5j_A RAS-related protein RAB 96.6 0.0021 7.2E-08 54.4 5.1 85 71-156 88-177 (191)
405 3trf_A Shikimate kinase, SK; a 96.6 0.0011 3.7E-08 56.1 3.3 23 159-181 5-27 (185)
406 2wwf_A Thymidilate kinase, put 96.6 0.0011 3.7E-08 57.2 3.3 24 158-181 9-32 (212)
407 2lkc_A Translation initiation 96.6 0.011 3.6E-07 48.8 9.2 85 70-156 72-164 (178)
408 2b6h_A ADP-ribosylation factor 96.6 0.0033 1.1E-07 53.6 6.2 84 72-156 92-184 (192)
409 2dby_A GTP-binding protein; GD 96.6 0.00062 2.1E-08 65.4 1.8 21 161-181 3-23 (368)
410 3sjy_A Translation initiation 96.6 0.0087 3E-07 57.6 9.9 83 73-156 95-185 (403)
411 1u8z_A RAS-related protein RAL 96.6 0.0018 6.2E-08 52.6 4.3 85 71-156 70-160 (168)
412 2c95_A Adenylate kinase 1; tra 96.6 0.0012 4.1E-08 56.1 3.3 24 158-181 8-31 (196)
413 3iij_A Coilin-interacting nucl 96.6 0.0011 3.6E-08 56.1 2.9 24 158-181 10-33 (180)
414 3con_A GTPase NRAS; structural 96.6 0.004 1.4E-07 52.3 6.6 86 70-156 86-176 (190)
415 3bwd_D RAC-like GTP-binding pr 96.6 0.0024 8.1E-08 53.1 5.0 90 66-156 69-174 (182)
416 1nks_A Adenylate kinase; therm 96.6 0.0011 3.8E-08 55.9 3.0 21 161-181 3-23 (194)
417 1nn5_A Similar to deoxythymidy 96.5 0.0012 4.2E-08 56.9 3.3 24 158-181 8-31 (215)
418 2wkq_A NPH1-1, RAS-related C3 96.5 0.0021 7.1E-08 59.1 5.1 58 161-246 157-216 (332)
419 1gtv_A TMK, thymidylate kinase 96.5 0.00051 1.7E-08 59.4 0.8 21 161-181 2-22 (214)
420 2a9k_A RAS-related protein RAL 96.5 0.0021 7.1E-08 53.4 4.5 85 71-156 84-174 (187)
421 3oes_A GTPase rhebl1; small GT 96.5 0.0056 1.9E-07 52.2 7.4 89 68-157 87-181 (201)
422 1z0j_A RAB-22, RAS-related pro 96.5 0.0041 1.4E-07 50.8 6.2 88 68-156 70-162 (170)
423 2wsm_A Hydrogenase expression/ 96.5 0.00098 3.3E-08 57.9 2.4 23 159-181 30-52 (221)
424 3j2k_7 ERF3, eukaryotic polype 96.5 0.0018 6.1E-08 63.4 4.5 56 161-246 19-108 (439)
425 2yc2_C IFT27, small RAB-relate 96.5 0.002 7E-08 54.7 4.4 85 70-155 90-184 (208)
426 3q85_A GTP-binding protein REM 96.5 0.004 1.4E-07 51.0 6.0 83 73-156 72-160 (169)
427 3lvq_E ARF-GAP with SH3 domain 96.5 0.0019 6.6E-08 63.6 4.7 51 161-242 324-375 (497)
428 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0014 4.8E-08 62.7 3.5 35 147-181 9-46 (359)
429 3r20_A Cytidylate kinase; stru 96.5 0.00084 2.9E-08 60.5 1.8 23 159-181 9-31 (233)
430 1vht_A Dephospho-COA kinase; s 96.5 0.0014 4.6E-08 57.2 3.1 23 159-181 4-26 (218)
431 1c1y_A RAS-related protein RAP 96.5 0.0033 1.1E-07 51.2 5.3 84 72-156 70-160 (167)
432 3qks_A DNA double-strand break 96.5 0.0013 4.5E-08 57.5 3.0 24 157-180 21-44 (203)
433 1zd9_A ADP-ribosylation factor 96.5 0.0069 2.4E-07 51.1 7.5 84 72-156 86-178 (188)
434 1tev_A UMP-CMP kinase; ploop, 96.4 0.0014 5E-08 55.3 2.9 23 159-181 3-25 (196)
435 3kl4_A SRP54, signal recogniti 96.4 0.00092 3.1E-08 65.6 1.8 38 159-208 97-134 (433)
436 4dkx_A RAS-related protein RAB 96.4 0.0026 8.8E-08 56.2 4.6 54 161-242 15-71 (216)
437 1ky3_A GTP-binding protein YPT 96.4 0.0081 2.8E-07 49.5 7.4 85 71-156 76-171 (182)
438 2oil_A CATX-8, RAS-related pro 96.4 0.0033 1.1E-07 53.1 5.1 87 69-156 90-181 (193)
439 3tr5_A RF-3, peptide chain rel 96.4 0.0008 2.8E-08 67.6 1.4 22 160-181 14-35 (528)
440 1via_A Shikimate kinase; struc 96.4 0.0014 4.8E-08 55.1 2.7 21 161-181 6-26 (175)
441 3cpj_B GTP-binding protein YPT 96.4 0.0042 1.4E-07 54.1 5.9 88 68-156 77-169 (223)
442 1ek0_A Protein (GTP-binding pr 96.4 0.0035 1.2E-07 51.1 5.0 87 70-157 69-163 (170)
443 2elf_A Protein translation elo 96.4 0.0021 7.1E-08 61.6 4.1 46 161-246 23-73 (370)
444 1uf9_A TT1252 protein; P-loop, 96.4 0.0017 5.7E-08 55.5 3.1 23 159-181 8-30 (203)
445 1q3t_A Cytidylate kinase; nucl 96.4 0.0018 6.2E-08 57.4 3.4 25 157-181 14-38 (236)
446 2ce2_X GTPase HRAS; signaling 96.4 0.0038 1.3E-07 50.5 5.0 85 71-156 69-158 (166)
447 3izq_1 HBS1P, elongation facto 96.4 0.0013 4.4E-08 67.3 2.6 24 159-182 167-190 (611)
448 1gvn_B Zeta; postsegregational 96.4 0.0015 5.1E-08 60.3 2.8 24 158-181 32-55 (287)
449 2hxs_A RAB-26, RAS-related pro 96.3 0.0039 1.3E-07 51.5 5.1 85 71-156 74-166 (178)
450 3kkq_A RAS-related protein M-R 96.3 0.0039 1.3E-07 51.9 5.2 85 71-156 84-175 (183)
451 2hup_A RAS-related protein RAB 96.3 0.0032 1.1E-07 54.0 4.7 84 72-156 97-186 (201)
452 3p26_A Elongation factor 1 alp 96.3 0.00092 3.2E-08 66.2 1.4 58 161-246 35-124 (483)
453 3reg_A RHO-like small GTPase; 96.3 0.0039 1.3E-07 52.7 5.2 89 67-156 85-181 (194)
454 1kk1_A EIF2gamma; initiation o 96.3 0.0029 1E-07 61.0 4.9 57 161-242 12-92 (410)
455 4ad8_A DNA repair protein RECN 96.3 0.00028 9.7E-09 70.4 -2.4 31 150-180 51-81 (517)
456 2bwj_A Adenylate kinase 5; pho 96.3 0.0019 6.6E-08 54.9 3.2 24 158-181 11-34 (199)
457 3q3j_B RHO-related GTP-binding 96.3 0.0046 1.6E-07 53.7 5.6 89 67-156 89-196 (214)
458 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0019 6.3E-08 64.0 3.4 34 148-181 140-173 (473)
459 3bos_A Putative DNA replicatio 96.3 0.0032 1.1E-07 54.7 4.6 35 147-181 37-74 (242)
460 3qkt_A DNA double-strand break 96.3 0.0017 5.8E-08 61.2 3.0 42 266-308 248-301 (339)
461 2bov_A RAla, RAS-related prote 96.3 0.0034 1.2E-07 53.3 4.7 84 72-156 81-170 (206)
462 1m2o_B GTP-binding protein SAR 96.3 0.013 4.4E-07 49.7 8.3 85 71-156 85-185 (190)
463 1kao_A RAP2A; GTP-binding prot 96.3 0.0054 1.8E-07 49.7 5.6 84 72-156 70-159 (167)
464 2hf9_A Probable hydrogenase ni 96.3 0.0019 6.4E-08 56.2 3.0 23 159-181 38-60 (226)
465 1s0u_A EIF-2-gamma, translatio 96.3 0.0021 7.1E-08 62.1 3.5 55 161-242 10-90 (408)
466 1vg8_A RAS-related protein RAB 96.3 0.0065 2.2E-07 51.6 6.3 89 68-157 72-169 (207)
467 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0036 1.2E-07 52.0 4.6 87 68-155 68-172 (186)
468 2vli_A Antibiotic resistance p 96.3 0.0016 5.4E-08 54.8 2.3 24 158-181 4-27 (183)
469 3fb4_A Adenylate kinase; psych 96.3 0.002 6.9E-08 55.9 3.0 21 161-181 2-22 (216)
470 1zd8_A GTP:AMP phosphotransfer 96.3 0.0022 7.4E-08 56.5 3.2 24 158-181 6-29 (227)
471 2z0h_A DTMP kinase, thymidylat 96.3 0.0021 7.1E-08 54.6 3.0 21 161-181 2-22 (197)
472 1jbk_A CLPB protein; beta barr 96.3 0.0039 1.3E-07 51.7 4.7 36 146-181 27-65 (195)
473 1aky_A Adenylate kinase; ATP:A 96.3 0.0023 7.8E-08 55.9 3.4 24 158-181 3-26 (220)
474 4djt_A GTP-binding nuclear pro 96.3 0.0056 1.9E-07 52.8 5.8 85 71-156 79-168 (218)
475 2bme_A RAB4A, RAS-related prot 96.3 0.0055 1.9E-07 51.1 5.6 86 70-156 76-166 (186)
476 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0042 1.4E-07 51.8 4.8 85 71-156 70-159 (189)
477 3clv_A RAB5 protein, putative; 96.2 0.0059 2E-07 51.1 5.8 84 72-156 112-197 (208)
478 3dz8_A RAS-related protein RAB 96.2 0.0062 2.1E-07 51.4 5.9 84 72-156 91-179 (191)
479 2cdn_A Adenylate kinase; phosp 96.2 0.0024 8.3E-08 54.9 3.4 25 157-181 18-42 (201)
480 2p5t_B PEZT; postsegregational 96.2 0.0014 4.8E-08 59.0 1.9 24 158-181 31-54 (253)
481 2ze6_A Isopentenyl transferase 96.2 0.0019 6.6E-08 58.3 2.8 21 161-181 3-23 (253)
482 4dhe_A Probable GTP-binding pr 96.2 0.021 7.1E-07 49.2 9.2 81 74-156 113-204 (223)
483 1xjc_A MOBB protein homolog; s 96.2 0.0024 8.1E-08 54.7 3.1 22 160-181 5-26 (169)
484 1zak_A Adenylate kinase; ATP:A 96.2 0.0021 7.3E-08 56.2 2.9 23 159-181 5-27 (222)
485 4gzl_A RAS-related C3 botulinu 96.2 0.0054 1.8E-07 52.7 5.4 89 67-156 92-198 (204)
486 3hr8_A Protein RECA; alpha and 96.2 0.0017 5.9E-08 62.0 2.3 24 158-181 60-83 (356)
487 3dl0_A Adenylate kinase; phosp 96.2 0.0023 8E-08 55.5 3.0 21 161-181 2-22 (216)
488 2dyk_A GTP-binding protein; GT 96.2 0.013 4.5E-07 47.3 7.3 78 73-156 76-155 (161)
489 3zvr_A Dynamin-1; hydrolase, D 96.2 0.0093 3.2E-07 62.4 7.9 24 160-183 52-75 (772)
490 3c5c_A RAS-like protein 12; GD 96.2 0.0075 2.6E-07 50.9 6.1 83 73-156 88-179 (187)
491 2o52_A RAS-related protein RAB 96.2 0.0033 1.1E-07 53.8 3.8 85 71-156 92-181 (200)
492 1d2e_A Elongation factor TU (E 96.2 0.0038 1.3E-07 60.1 4.6 54 161-242 5-75 (397)
493 2fv8_A H6, RHO-related GTP-bin 96.2 0.0095 3.3E-07 51.1 6.8 55 68-123 88-145 (207)
494 2pbr_A DTMP kinase, thymidylat 96.2 0.0027 9.2E-08 53.6 3.2 21 161-181 2-22 (195)
495 1e6c_A Shikimate kinase; phosp 96.1 0.0023 8E-08 53.2 2.6 22 160-181 3-24 (173)
496 3l0i_B RAS-related protein RAB 96.1 0.0023 7.9E-08 54.6 2.6 87 70-157 99-190 (199)
497 2ew1_A RAS-related protein RAB 96.1 0.0063 2.2E-07 52.5 5.4 87 69-156 91-182 (201)
498 2erx_A GTP-binding protein DI- 96.1 0.0038 1.3E-07 51.0 3.8 85 71-156 69-160 (172)
499 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0021 7.2E-08 61.5 2.5 36 158-205 34-69 (392)
500 1zun_B Sulfate adenylate trans 96.1 0.0026 8.8E-08 62.0 3.2 74 161-246 26-117 (434)
No 1
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=100.00 E-value=1.1e-48 Score=370.63 Aligned_cols=278 Identities=34% Similarity=0.583 Sum_probs=222.1
Q ss_pred eeEEEecCCCCceeccCCC--CcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccccccccccE
Q 020346 2 RVIVQQSEPSRTSDCNDKT--GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79 (327)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD~ 79 (327)
.|+|++.+.|+|+|..+++ |.++.|.+||++++++..++|||||.++..+ ++.|+|++++||+|.|.||++||+|+
T Consensus 12 ~g~vi~~~~~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~anvD~ 89 (307)
T 1t9h_A 12 EGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQ 89 (307)
T ss_dssp EEEEEEEETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCCSCEETTTTEECCCE
T ss_pred CeEEEEEECCEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcchhhhhhHHHHHhCCE
Confidence 4899999988889876532 7789999999999888889999999998643 45799999999999999999999999
Q ss_pred EEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH----HHHHHhhhhhcCCceeeccCcchhhHHHHHh
Q 020346 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 80 lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (327)
+++|+++..|.++...|+|||..|+..++++++|+||+||.++.. ...|...|+.+||+++.+|..+..+++.|..
T Consensus 90 v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 90 AVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 999999999999999999999999999999999999999987644 5678888888999999999877777777655
Q ss_pred hcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC
Q 020346 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (327)
Q Consensus 156 ~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~ 235 (327)
..+|++++|+|+||||||||+|+|+| +..|+.|+|.+ ..++|+|+|+...++... .+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g------------~~~~~~G~I~~----------~~~~G~~tt~~~~~~~~~-~g 226 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISP------------ELGLRTNEISE----------HLGRGKHTTRHVELIHTS-GG 226 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------------------CCCCCEEEET-TE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcc------------cccccccceee----------ecCCCcccccHHHHhhcC-CE
Confidence 56999999999999999999999999 77888888775 112333444433344443 56
Q ss_pred eEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHHHHH
Q 020346 236 YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEIR 308 (327)
Q Consensus 236 ~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~e~~ 308 (327)
+++||||+..+.+..++.+.+...|+++... ...|.|.+|.|..||+|.+.. +..|++.|..++.+++
T Consensus 227 ~v~dtpg~~~~~l~~lt~e~l~~~f~~~~~~-----~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~ 301 (307)
T 1t9h_A 227 LVADTPGFSSLEFTDIEEEELGYTFPDIREK-----SSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIK 301 (307)
T ss_dssp EEESSCSCSSCCCTTCCHHHHGGGSHHHHHH-----GGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCccccccccCCHHHHHHHHHHHHHH-----hhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHh
Confidence 8889999998777666667777788988666 678999999999999999954 3459999999999986
Q ss_pred H
Q 020346 309 I 309 (327)
Q Consensus 309 ~ 309 (327)
+
T Consensus 302 ~ 302 (307)
T 1t9h_A 302 D 302 (307)
T ss_dssp T
T ss_pred h
Confidence 5
No 2
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=100.00 E-value=1.1e-46 Score=363.41 Aligned_cols=279 Identities=26% Similarity=0.464 Sum_probs=222.6
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCc------eEEeeeccccccccccc-
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR------GMIENVFQRSTEILDPP- 73 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~------~~i~~i~~R~~~l~r~~- 73 (327)
|.|+|++.+.|+|+|.+. +|..+.|.+||+++ .++|||||.++..+ ++. ++|++|+||+|.|.||.
T Consensus 48 ~~g~Vi~~~~~~~~v~~~-~g~~~~~~~r~~~~----~~~vGD~V~~~~~~--~~~~~~~~~~~I~~i~~R~~~l~R~~~ 120 (358)
T 2rcn_A 48 AEGIVISRFGMHADVESA-DGEVHRCNIRRTIR----SLVTGDRVVWRPGK--AAAEGVNVKGIVEAVHERTSVLTRPDF 120 (358)
T ss_dssp EEEEEEEEETTEEEEEET-TSCEEEEEECTTCC----CCCBTCEEEEECBC---------CCEEEEEECCCSCEEEEC--
T ss_pred ceEEEEEEECCEEEEEeC-CCcEEEEEecCCCC----CCCCCcEEEEEeCC--CccccccccceEeEEeCCcCcccCcch
Confidence 579999999777787654 57789999999885 49999999998643 223 89999999999999963
Q ss_pred -------cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcCCceeecc
Q 020346 74 -------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 74 -------~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s 143 (327)
+||+|++++|.+.. |.++...|+|||+.|+..++++++|+||+||.+++. ...|...|+.+||+++.+|
T Consensus 121 ~~~~~~i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~S 199 (358)
T 2rcn_A 121 YDGVKPIAANIDQIVIVSAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVS 199 (358)
T ss_dssp ---CEEEEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECB
T ss_pred hhHHHHHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEe
Confidence 89999999998764 999999999999999999999999999999998765 5578888989999999999
Q ss_pred CcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccc-ccccceeec-ceeeccccccCCCcce
Q 020346 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFE-DQRVGEVSTKSGRGKH 221 (327)
Q Consensus 144 ~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~-p~~G~i~~~-g~~v~~~s~~~~~g~~ 221 (327)
..+..++++|++.++|++++|+|+||||||||+|+|+| +.. |+.|+|.++ |.. +|
T Consensus 200 a~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g------------~~~~~~~G~I~~~~G~g-----------~~ 256 (358)
T 2rcn_A 200 SHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLG------------LQNEILTNDVSNVSGLG-----------QH 256 (358)
T ss_dssp TTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHC------------CSSCCCCC----------------------
T ss_pred cCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhc------------cccccccCCccccCCCC-----------cc
Confidence 99999999999999999999999999999999999999 777 999998765 432 23
Q ss_pred ee--EEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------
Q 020346 222 TT--RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG------- 292 (327)
Q Consensus 222 tt--~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~------- 292 (327)
++ ..+++++| +.+++|+|++....+..+...++...++++.+. ...|.|.+|.|.++|||.+..
T Consensus 257 tt~~~~i~~v~q--~~~l~dtpgv~e~~l~~l~~~e~~~~~~e~l~~-----~gl~~f~~~~~~~lSG~~~r~ala~gli 329 (358)
T 2rcn_A 257 TTTAARLYHFPH--GGDVIDSPGVREFGLWHLEPEQITQGFVEFHDY-----LGHCKYRDCKHDADPGCAIREAVENGAI 329 (358)
T ss_dssp --CCCEEEECTT--SCEEEECHHHHTCCCCCCCHHHHHHTSGGGGGG-----TTCSSSTTCCSSSCTTCHHHHHHHHTSS
T ss_pred ceEEEEEEEECC--CCEecCcccHHHhhhcCCCHHHHHHHHHHHHHH-----cCCchhcCCCcccCCHHHHHHHHHhcCC
Confidence 33 34566665 468899999998877777777778888888666 567999999999999999843
Q ss_pred cHHHHHHHHHHHHHHHHhHHHhhhhhc
Q 020346 293 DWERYQYYFQLLDEIRIREEFQLRTFG 319 (327)
Q Consensus 293 ~~~r~~~~~~ll~e~~~~~~~~~~~~~ 319 (327)
++.||++|+++++|+.++. +.|++.
T Consensus 330 ~~~R~~~y~~l~~e~~~~~--~~~~~~ 354 (358)
T 2rcn_A 330 AETRFENYHRILESMAQVK--TRKNFS 354 (358)
T ss_dssp CHHHHHHHHHHHHHHC-----------
T ss_pred CHHHHHHHHHHHHHHHhhH--hhccCC
Confidence 5679999999999986532 345443
No 3
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=1.5e-41 Score=321.07 Aligned_cols=273 Identities=30% Similarity=0.511 Sum_probs=219.8
Q ss_pred CeeEEEecCCCCc--eeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccccccccccccccc
Q 020346 1 MRVIVQQSEPSRT--SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78 (327)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD 78 (327)
|.|+|++.+.|+| +|. .+|.++.|.+||++++.+. ++|||||.++..+ +..|+|+++.+|.+.+.|+.++|+|
T Consensus 7 ~~g~v~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~--~~~g~I~~i~er~~~l~r~~~~naD 81 (302)
T 2yv5_A 7 KRGLVVDREAQMIGVYLF--EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD--PNTFAIEEVEERKNLLIRPKVANVD 81 (302)
T ss_dssp EEEEEEEEETTEEEEEET--TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE--TTEEEEEEECCCSCEEETTEEESCC
T ss_pred eeEEEEEeeCCeEEEEEe--cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc--CCeEEEEeeCChHHHHhHHHHHhcC
Confidence 4799999998888 887 3567899999999987656 9999999998643 4579999999999999999999999
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcCCceeeccCcchhhHHHHHh
Q 020346 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 79 ~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (327)
++++|+++..|.++...++++|..+...++|+++|+||+||.++.+ ...+...+..++++++.+|+.+..+++.+..
T Consensus 82 ~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 82 RVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp EEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHh
Confidence 9999999998988999999999999889999999999999987652 4556666777899999999999999999988
Q ss_pred hcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC
Q 020346 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (327)
Q Consensus 156 ~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~ 235 (327)
.+.|++++|+|+||||||||+|+|. .. +|++|+|.+ +.++|+|+|+...++.....+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~------------~~~~G~i~~----------~~~~G~~~t~~~~~~~~~~~g 218 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE------------ELRTQEVSE----------KTERGRHTTTGVRLIPFGKGS 218 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC------------CCCCSCC-------------------CCCCEEEEEETTTE
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh------------hCccccccc----------ccCCCCCceeeEEEEEcCCCc
Confidence 8899999999999999999999999 43 577888776 123344455444444443467
Q ss_pred eEEeCcccCCccc-cccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHHHH
Q 020346 236 YLADTPGFNQPSL-LKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307 (327)
Q Consensus 236 ~i~Dtpg~~~~~l-~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~e~ 307 (327)
+++|+||+..+.+ ..++.+++...|+++... . |.|.+|.|..||+|.+.. +..|++.|..++.++
T Consensus 219 ~v~d~pg~~~~~l~~~lt~e~l~~~f~~~~~~-----~--c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~ 291 (302)
T 2yv5_A 219 FVGDTPGFSKVEATMFVKPREVRNYFREFLRY-----Q--CKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVY 291 (302)
T ss_dssp EEESSCCCSSCCGGGTSCGGGGGGGCGGGHHH-----H--HHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCC
T ss_pred EEEECcCcCcCcccccCCHHHHHHHHHHHHHc-----c--CCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 8889999987766 566666776677776444 2 889999999999999854 235888888887765
Q ss_pred H
Q 020346 308 R 308 (327)
Q Consensus 308 ~ 308 (327)
+
T Consensus 292 ~ 292 (302)
T 2yv5_A 292 L 292 (302)
T ss_dssp C
T ss_pred H
Confidence 3
No 4
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=100.00 E-value=6.1e-34 Score=268.54 Aligned_cols=274 Identities=28% Similarity=0.500 Sum_probs=214.3
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccccccccccccccEE
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~l~r~~~anvD~l 80 (327)
|+|+|++.+.|+|+|...+++.++.|.++|.|.+....+.|||+|.+.... ++...|.++.+|.+.+.++.++|+|.+
T Consensus 11 ~~g~v~~~~~~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~--~~~~~iwD~qer~~~l~~~~~~~ad~v 88 (301)
T 1u0l_A 11 RRGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANVDQV 88 (301)
T ss_dssp EEEEEEEEETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCSCEETTTTEESCCEE
T ss_pred eeEEEEEeeCCEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEEEcC--CCeEEEEEEccccceeeccccccCCEE
Confidence 489999999888888744336789999999996455679999999876422 346789999999999999999999999
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHH---HHHHHhhhhhcCCceeeccCcchhhHHHHHhhc
Q 020346 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL 157 (327)
Q Consensus 81 liv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l 157 (327)
++|+++..|.++...+++++..+...+.|+++|+||+||.++.. ...+...+... ++.+.+|+.+..+++.+-..+
T Consensus 89 ilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 89 ILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp EEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHh
Confidence 99999998887788899999888878899999999999987654 33444445444 788999999999999987778
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee---cceeeccccccCCCcceeeEEEEEEEccCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF---EDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~---~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~ 234 (327)
.|++++|+||||||||||||+|+| +..|++|+|.+ +|.++...+ .++.....
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g------------~~~~~~G~i~~~~~~g~~~t~~~-------------~~~~~~~~ 222 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP------------GLKLRVSEVSEKLQRGRHTTTTA-------------QLLKFDFG 222 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST------------TCCCC-------------CCCSC-------------CEEECTTS
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc------------cccccccceecccCCCCCceeee-------------EEEEcCCC
Confidence 999999999999999999999999 88999999998 776654322 12233335
Q ss_pred CeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcc-------cHHHHHHHHHHHHHH
Q 020346 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKG-------DWERYQYYFQLLDEI 307 (327)
Q Consensus 235 ~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~-------~~~r~~~~~~ll~e~ 307 (327)
++++|+|++....+..++..++...||++ +. +.|+|..|.|..||+|.+.. +..|++.|...+.|+
T Consensus 223 g~v~q~p~~~~~~~~~~~~~~~~~l~~~~----~~---~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse~ 295 (301)
T 1u0l_A 223 GYVVDTPGFANLEINDIEPEELKHYFKEF----GD---KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYEL 295 (301)
T ss_dssp CEEESSCSSTTCCCCSSCHHHHGGGSTTS----SS---CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCccCCCcCCHHHHHHHHHhc----cc---ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 67888999988877777778888888874 43 67889889999999999843 347999999999888
Q ss_pred HH
Q 020346 308 RI 309 (327)
Q Consensus 308 ~~ 309 (327)
.+
T Consensus 296 ~~ 297 (301)
T 1u0l_A 296 LG 297 (301)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.86 E-value=5.8e-24 Score=205.01 Aligned_cols=141 Identities=17% Similarity=0.205 Sum_probs=104.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG------------l~~p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG------------FEQPDSGEISLSGKTIFSKN 72 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT------------SSCCSEEEEEETTEEEESSS
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc------------CCCCCCcEEEECCEECcccc
Confidence 34577889998888999999998 899999999999999999999999 99999999999999984322
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCccc---------------cccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSL---------------LKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l---------------~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
... ....+.++|+||++. .++.|+..+..... +.+.+.++.+..+ ..|||||+||
T Consensus 73 ~~~---~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---~~LSGGq~QR 146 (359)
T 3fvq_A 73 TNL---PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---HELSGGQQQR 146 (359)
T ss_dssp CBC---CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---GGSCHHHHHH
T ss_pred ccc---chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---hhCCHHHHHH
Confidence 110 113467999999753 34445544432110 0111111222222 2399999999
Q ss_pred ccccccccccCCceEEcccH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~ 294 (327)
+++++++ +.+|.++|+|+|
T Consensus 147 ValArAL-~~~P~lLLLDEP 165 (359)
T 3fvq_A 147 AALARAL-APDPELILLDEP 165 (359)
T ss_dssp HHHHHHH-TTCCSEEEEEST
T ss_pred HHHHHHH-HcCCCEEEEeCC
Confidence 9999999 999999999966
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.86 E-value=9.3e-24 Score=204.99 Aligned_cols=152 Identities=15% Similarity=0.175 Sum_probs=112.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG------------l~~p~~G~I~i~G~~~~~~~ 71 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG------------LETITSGDLFIGEKRMNDTP 71 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTCC
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHc------------CCCCCCeEEEECCEECCCCC
Confidence 34577889998888999999998 899999999999999999999999 99999999999999997765
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
.. .+.++|++|++.. ++.|+..+.... ++.+.+..+.+..| ..|||||+||
T Consensus 72 ~~-------~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---~~LSGGqrQR 141 (381)
T 3rlf_A 72 PA-------ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---KALSGGQRQR 141 (381)
T ss_dssp GG-------GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---GGSCHHHHHH
T ss_pred HH-------HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---hHCCHHHHHH
Confidence 42 3569999998532 344443332110 01111112222222 2399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|+++|+|+| ......+.+++++..
T Consensus 142 VaiArAL-~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 142 VAIGRTL-VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp HHHHHHH-HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555555666543
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.85 E-value=1.3e-23 Score=195.09 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=111.6
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.++++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 13 ~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 13 EASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG------------YLSPSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTS------------SSCCSSCEEEETTEETTTSCH
T ss_pred EEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEECCcCCH
Confidence 4567888888888999999998 999999999999999999999999 999999999999999876654
Q ss_pred cCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------------cccCHhHHhhhhHHHHHhcCccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
.. ..+.+++++|.+.. ++.++..+..... +.+...++.+.. ...|||||+||+++
T Consensus 81 ~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgGq~QRv~i 152 (266)
T 4g1u_C 81 KA-----LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRD---YRVLSGGEQQRVQL 152 (266)
T ss_dssp HH-----HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSB---GGGCCHHHHHHHHH
T ss_pred HH-----HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCC---cccCCHHHHHHHHH
Confidence 32 34568999997532 2223222211100 000111111111 23499999999999
Q ss_pred ccccccc------CCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 278 NNCLHLG------EPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 278 ~~~~h~~------ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
++++ +. +|+++|+||| .......++++++...
T Consensus 153 AraL-~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 153 ARVL-AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp HHHH-HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 9999 87 9999999954 4556666777777544
No 8
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.85 E-value=1.7e-23 Score=197.93 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=112.0
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++++|. ...+|+++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR------------FYDISSGCIRIDGQDISQV 121 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTT------------SSCCSEEEEEETTEETTSB
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHc------------CCCCCCcEEEECCEEcccC
Confidence 56788999995 467899999998 899999999999999999999999 9999999999999999877
Q ss_pred cccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCHh---HHhhhhHHHH--------------HhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTKQ---SLAQTFPEIK--------------EMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~~---~l~~~~~~~~--------------~~LSgGq~ 272 (327)
+... .++.++|+||++.. ++.|+..+.......-... ......+.+. ..|||||+
T Consensus 122 ~~~~-----~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 122 TQAS-----LRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp CHHH-----HHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred CHHH-----HhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 6443 56789999997532 3344433332211100000 0111111111 24999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+++|+++ +.+|.++|+|+| .......+++.++
T Consensus 197 QRvaiARAL-~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 197 QRVAIARTI-LKAPGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp HHHHHHHHH-HHCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999955 3444445555555
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.85 E-value=1.1e-23 Score=190.54 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=109.1
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...+.
T Consensus 6 ~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 6 RAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL------------LDAPTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTT------------SSCCSEEEEEETTEECCSSCH
T ss_pred EEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECCCCCH
Confidence 4567888888778999999998 999999999999999999999999 999999999999998865432
Q ss_pred cCCCccee-eEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhhhHH---------HHHhcCcccccccc
Q 020346 215 KSGRGKHT-TRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQTFPE---------IKEMLKANEPAKCS 276 (327)
Q Consensus 215 ~~~~g~~t-t~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~~~~---------~~~~LSgGq~q~~~ 276 (327)
... ... .+.++|+||++.. ++.|+..+... ....... ........ ....|||||+||++
T Consensus 74 ~~~--~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 74 KEL--SLLRNRKLGFVFQFHYLIPELTALENVIVPML-KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHH--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHH
T ss_pred HHH--HHHHhCcEEEEecCcccCCCCCHHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 110 001 2569999997532 22222211100 0000000 01111110 11249999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+++++ +.+|.++++||| ...+...++++++.+.
T Consensus 151 laral-~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 151 IARAL-ANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHT-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 99999 999999999965 4556666777776543
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=1.1e-22 Score=189.77 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=107.8
Q ss_pred cCCceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++++|++. .+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G------------l~~p~~G~I~~~G~~i~~~ 75 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG------------ILKPSSGRILFDNKPIDYS 75 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECCCS
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc------------CCCCCCeEEEECCEECCcc
Confidence 3457788889654 5999999998 999999999999999999999999 9999999999999988421
Q ss_pred cccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~ 272 (327)
... ....++.++|+||++.. ++.|+..+.... ++.+...++.+.. ...|||||+
T Consensus 76 ~~~---~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~LSgGqk 149 (275)
T 3gfo_A 76 RKG---IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP---THCLSFGQK 149 (275)
T ss_dssp HHH---HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB---GGGSCHHHH
T ss_pred ccc---HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---cccCCHHHH
Confidence 100 01145679999997521 222222111000 0001111111111 123999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||+++|+++ +.+|+++|+|+| .....+.++++++.
T Consensus 150 QRv~iAraL-~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 150 KRVAIAGVL-VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp HHHHHHHHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 999999999 999999999955 45566667777775
No 11
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.85 E-value=5.1e-23 Score=188.93 Aligned_cols=156 Identities=15% Similarity=0.241 Sum_probs=111.3
Q ss_pred hcCCceeeccC--cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 134 TWGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 134 ~~~~~~~~~s~--~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.+.++.+.++| ++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR------------FYIPENGQVLIDGHDLA 74 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEETT
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEhh
Confidence 35567888999 3567899999998 999999999999999999999999 99999999999999886
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccc---------cCHhHHhhhhH--------HHHHhcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLK---------VTKQSLAQTFP--------EIKEMLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~---------~~~~~l~~~~~--------~~~~~LSgG 270 (327)
..+... .++.++|+||++.. ++.|+..+....... +...+....+| +....||||
T Consensus 75 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 149 (247)
T 2ff7_A 75 LADPNW-----LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 149 (247)
T ss_dssp TSCHHH-----HHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred hCCHHH-----HHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence 543221 34579999997532 333443332111000 00011111111 001359999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+||+++++++ +.+|.++|+|+| ...+...++++++
T Consensus 150 q~qRv~iAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 150 QRQRIAIARAL-VNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp HHHHHHHHHHH-TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999954 4556666677666
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.85 E-value=4.8e-23 Score=190.92 Aligned_cols=160 Identities=13% Similarity=0.133 Sum_probs=110.1
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|.++. .+
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~i~-~~ 91 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL------------LEDFDEGEIIIDGINLK-AK 91 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEESS-ST
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc------------CCCCCCcEEEECCEECC-Cc
Confidence 45678888998778999999998 999999999999999999999999 99999999999999875 22
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhhhH---------HHHHhcCcccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQTFP---------EIKEMLKANEPAKCS 276 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~~~---------~~~~~LSgGq~q~~~ 276 (327)
... ....++.++|+||++.. ++.|+..+........... .+.+... .....|||||+||++
T Consensus 92 ~~~--~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 92 DTN--LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp TCC--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred ccc--HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 111 01134569999997522 2223322210000001100 0111111 112249999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+++++ +.+|.++|+||| ...+...++++++.+.
T Consensus 170 lAraL-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 208 (263)
T 2olj_A 170 IARAL-AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208 (263)
T ss_dssp HHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 99999 999999999955 4556666777776543
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.85 E-value=4.5e-23 Score=190.18 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=110.9
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...+
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G------------l~~p~~G~i~~~g~~~~~~~ 75 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG------------FLKADEGRVYFENKDITNKE 75 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTTCC
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEECCCCC
Confidence 34567888888878999999998 999999999999999999999999 99999999999999886543
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc-ccc-----------cC----HhHHhhhhH---------HHH
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS-LLK-----------VT----KQSLAQTFP---------EIK 264 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~-l~~-----------~~----~~~l~~~~~---------~~~ 264 (327)
... ..++.++++||++. .++.|+..+.... ... .. .....+... ...
T Consensus 76 ~~~----~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 76 PAE----LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp HHH----HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred HHH----HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 211 02456999999752 2333333221100 000 00 001111111 112
Q ss_pred HhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 265 EMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
..|||||+||+++++++ +.+|.++|+||| ...+...++++++...
T Consensus 152 ~~LSgGqkQrv~iAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 202 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRAL-MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202 (257)
T ss_dssp GGSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC
Confidence 24999999999999999 999999999965 4666666777776543
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.85 E-value=4.2e-23 Score=198.89 Aligned_cols=152 Identities=16% Similarity=0.257 Sum_probs=110.2
Q ss_pred cCCceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.+.++| ++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|+++...
T Consensus 15 l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG------------LERPTKGDVWIGGKRVTDL 82 (355)
T ss_dssp EEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTC
T ss_pred EEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCccEEEECCEECCcC
Confidence 3457788899 7778999999998 899999999999999999999999 9999999999999998654
Q ss_pred cccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
+. ..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+|
T Consensus 83 ~~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---~~LSGGq~Q 152 (355)
T 1z47_A 83 PP-------QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---HELSGGQQQ 152 (355)
T ss_dssp CG-------GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---GGSCHHHHH
T ss_pred Ch-------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---ccCCHHHHH
Confidence 42 2457999999742 2333443321100 01111111112222 239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|.++|+|+| ...+..+.+++++..
T Consensus 153 RvalArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 153 RVALARAL-APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 344555566666543
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.85 E-value=5.2e-23 Score=198.58 Aligned_cols=151 Identities=15% Similarity=0.228 Sum_probs=110.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 5 RVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG------------IYKPTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC------------CCCCCccEEEECCEECCCCCh
Confidence 4567888888778999999998 899999999999999999999999 999999999999999876543
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+||+
T Consensus 73 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---~~LSgGq~QRv 142 (359)
T 2yyz_A 73 -------KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---TQLSGGQQQRV 142 (359)
T ss_dssp -------GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---GGSCHHHHHHH
T ss_pred -------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---hhCCHHHHHHH
Confidence 2356999999753 2344444332110 01111111222222 23999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++++|+| ...+..+.+++++..
T Consensus 143 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 143 ALARAL-VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp HHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 344555566666543
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.85 E-value=2.4e-22 Score=194.79 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=109.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~~ 79 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG------------LEEPTEGRIYFGDRDVTYLP 79 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSC
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHc------------CCCCCceEEEECCEECCCCC
Confidence 44677888898778999999998 899999999999999999999999 99999999999999987654
Q ss_pred ccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAK 274 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~ 274 (327)
. ..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+||
T Consensus 80 ~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---~~LSGGq~QR 149 (372)
T 1v43_A 80 P-------KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---AQLSGGQRQR 149 (372)
T ss_dssp G-------GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---TTCCSSCHHH
T ss_pred h-------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---hhCCHHHHHH
Confidence 3 2356999999753 2344444332110 00111111112222 2399999999
Q ss_pred ccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 275 CSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 275 ~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++++ +.+|.++++|+| ...+..+.+++++..
T Consensus 150 valArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 150 VAVARAI-VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp HHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999965 344555566666543
No 17
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.85 E-value=1.9e-23 Score=201.81 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=112.6
Q ss_pred cCCceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 135 WGYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 135 ~~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
+.++.++++|+. ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G------------L~~p~~G~I~i~G~~i 92 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL------------LERPTEGSVLVDGQEL 92 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEEC
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc------------CCCCCceEEEECCEEC
Confidence 446778888853 35899999998 899999999999999999999999 9999999999999998
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCcc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKAN 270 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgG 270 (327)
...+.... +..++.++|+||++.. ++.|+..+.... ++.+.+.+..+.++ ..||||
T Consensus 93 ~~~~~~~~--~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---~~LSGG 167 (366)
T 3tui_C 93 TTLSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---SNLSGG 167 (366)
T ss_dssp SSCCHHHH--HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---TTSCHH
T ss_pred CcCCHHHH--HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---hhCCHH
Confidence 77653221 0134579999997632 233332221000 00111111112222 239999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
|+||+++|+++ +.+|.++|+|+| .......++++++...
T Consensus 168 qkQRVaIArAL-~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 168 QKQRVAIARAL-ASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp HHHHHHHHHHT-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999954 5666677777777543
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.84 E-value=3.6e-23 Score=199.83 Aligned_cols=151 Identities=18% Similarity=0.273 Sum_probs=109.5
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 5 KLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG------------IYKPTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp EEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCG
T ss_pred EEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc------------CCCCCceEEEECCEECCcCCH
Confidence 4567888898778999999998 899999999999999999999999 999999999999999876543
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPAKC 275 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~ 275 (327)
. .+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+||+
T Consensus 73 ~-------~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---~~LSGGq~QRv 142 (362)
T 2it1_A 73 K-------DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP---WQLSGGQQQRV 142 (362)
T ss_dssp G-------GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---GGSCHHHHHHH
T ss_pred h-------HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh---hhCCHHHHHHH
Confidence 2 356999999753 2333443321100 00011111111222 23999999999
Q ss_pred cccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 276 SFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++++ +.+|.++++|+| ...+..+.+++++..
T Consensus 143 alArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 143 AIARAL-VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp HHHHHH-TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 999999 999999999965 344555566666543
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.84 E-value=9.7e-23 Score=185.68 Aligned_cols=159 Identities=13% Similarity=0.191 Sum_probs=108.6
Q ss_pred CceeeccCcc----hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++.++++|+. ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++..
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC------------LDKPTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTT
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCceEEEECCEEccc
Confidence 4567778863 35899999998 899999999999999999999999 999999999999999876
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcc--ccccCH----h---------HHhhhh-HHHHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPS--LLKVTK----Q---------SLAQTF-PEIKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~--l~~~~~----~---------~l~~~~-~~~~~~LSgGq 271 (327)
.+.... .+..++.++|+||++.. ++.|+..+.... ...... . .+.... ......|||||
T Consensus 72 ~~~~~~-~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 72 LDDDEL-TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp CCHHHH-HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred CCHHHH-HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHH
Confidence 653210 00013469999997532 333332221000 000000 0 110101 11123499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+||+++++++ +.+|.++|+|+| .......++++++..
T Consensus 151 ~QRv~iAral-~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 193 (235)
T 3tif_A 151 QQRVAIARAL-ANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193 (235)
T ss_dssp HHHHHHHHHH-TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 455666677777654
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=2.4e-23 Score=190.19 Aligned_cols=157 Identities=14% Similarity=0.200 Sum_probs=110.2
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...+.
T Consensus 8 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG------------LVRAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECTTCCH
T ss_pred EEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCceEEECCEECCCCCH
Confidence 4567888888778999999998 999999999999999999999999 999999999999998865432
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCC-ccccccC----HhHHhhhhHHH-------HHhcCcccccccccc
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQ-PSLLKVT----KQSLAQTFPEI-------KEMLKANEPAKCSFN 278 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~-~~l~~~~----~~~l~~~~~~~-------~~~LSgGq~q~~~~~ 278 (327)
... .++.++|+||++. .++.|+..+.. .....-. ..++.+.++.+ ...|||||+||++++
T Consensus 76 ~~~----~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 76 HVI----NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp HHH----HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred HHH----HhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHH
Confidence 110 1335999999752 23334333221 0000000 01111111111 123999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+...++++++.+
T Consensus 152 raL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 152 RAL-MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp HHH-TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999965 455666667776654
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=3e-23 Score=191.57 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=109.2
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|.++....
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST------------LIKPSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEETTTCH
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEECCEECCccH
Confidence 44677888998888999999998 999999999999999999999999 99999999999999875421
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccccCHh----HHhhhhH---------HHHHhcCcccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLKVTKQ----SLAQTFP---------EIKEMLKANEPAKCS 276 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~~~~~----~l~~~~~---------~~~~~LSgGq~q~~~ 276 (327)
. ..++.++|+||.+.. ++.|+..+... ....... ....... .....|||||+||++
T Consensus 84 ~------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~ 156 (256)
T 1vpl_A 84 H------EVRKLISYLPEEAGAYRNMQGIEYLRFVAG-FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL 156 (256)
T ss_dssp H------HHHTTEEEECTTCCCCTTSBHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHH
T ss_pred H------HHhhcEEEEcCCCCCCCCCcHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 1 134569999997532 22222221100 0000000 0111111 112249999999999
Q ss_pred ccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 277 FNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 277 ~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++++ +.+|.++|+|+| .......++++++..
T Consensus 157 lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 194 (256)
T 1vpl_A 157 IARAL-MVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194 (256)
T ss_dssp HHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh
Confidence 99999 999999999965 455666677777654
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.84 E-value=6.1e-23 Score=198.99 Aligned_cols=151 Identities=14% Similarity=0.206 Sum_probs=108.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc---
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE--- 211 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~--- 211 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++..
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 5 RLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG------------LEEPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT------------SSCCSEEEEEETTEEEEEGGG
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHc------------CCCCCccEEEECCEECccccc
Confidence 4567888888778999999998 999999999999999999999999 999999999999999865
Q ss_pred ---ccccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCc
Q 020346 212 ---VSTKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKA 269 (327)
Q Consensus 212 ---~s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSg 269 (327)
.+. ..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||
T Consensus 73 ~~~~~~-------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---~~LSG 142 (372)
T 1g29_1 73 GIFVPP-------KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---RELSG 142 (372)
T ss_dssp TEECCG-------GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---GGSCH
T ss_pred cccCCH-------hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---ccCCH
Confidence 321 2356999999753 2333443321100 00001111111222 23999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
||+||+++++++ +.+|.++|+|+| ...+..+.+++++..
T Consensus 143 Gq~QRvalArAL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 143 GQRQRVALGRAI-VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 344555556666543
No 23
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.84 E-value=5.6e-23 Score=198.00 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=109.0
Q ss_pred CCceeeccCcchh--hHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 136 GYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|++.. +++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...
T Consensus 5 ~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG------------LDVPSTGELYFDDRLVASN 72 (353)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT------------SSCCSEEEEEETTEEEEET
T ss_pred EEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECCEECccc
Confidence 3567888888777 999999998 899999999999999999999999 9999999999999988652
Q ss_pred cccCCCcceeeEEEEEEEccCC----CeEEeCcccCCcc---------------ccccCHhHHhhhhHHHHHhcCccccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS---------------LLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~---------------l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.... -....+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+|
T Consensus 73 ~~~~--~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---~~LSGGq~Q 147 (353)
T 1oxx_K 73 GKLI--VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---RELSGAQQQ 147 (353)
T ss_dssp TEES--SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---GGSCHHHHH
T ss_pred cccc--CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---hhCCHHHHH
Confidence 1000 0013467999999753 2344444332110 00011111112222 239999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|+++++++ +.+|.++|+|+| ...+..+.+++++.
T Consensus 148 RvalAraL-~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 148 RVALARAL-VKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187 (353)
T ss_dssp HHHHHHHH-TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 999999999965 34455555565554
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.84 E-value=4.2e-23 Score=198.49 Aligned_cols=149 Identities=16% Similarity=0.249 Sum_probs=108.3
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++. +++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|+++|+++...+.
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG------------l~~p~~G~I~~~g~~i~~~~~- 69 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG------------FHVPDSGRILLDGKDVTDLSP- 69 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHc------------CCCCCCcEEEECCEECCCCch-
Confidence 46778888777 999999998 899999999999999999999999 999999999999998865432
Q ss_pred CCCcceeeEEEEEEEccCC----CeEEeCcccCCcc------------ccccCHhHHhhhhHHHHHhcCccccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPS------------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~------------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
..+.++|+||++. .++.|+..+.... ++.+.+.++.+..+ ..|||||+||+++++
T Consensus 70 ------~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---~~LSgGq~QRvalAr 140 (348)
T 3d31_A 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---LTLSGGEQQRVALAR 140 (348)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---GGSCHHHHHHHHHHH
T ss_pred ------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---hhCCHHHHHHHHHHH
Confidence 3457999999752 2333433321100 01111111222222 239999999999999
Q ss_pred cccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 280 CLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 280 ~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++ +.+|.++++|+| ...+..+.+++++..
T Consensus 141 aL-~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~ 175 (348)
T 3d31_A 141 AL-VTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175 (348)
T ss_dssp HT-TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HH-HcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 99 999999999955 455555566666643
No 25
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.83 E-value=5.3e-23 Score=190.39 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=110.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc--
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-- 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~-- 211 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++..
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G------------l~~p~~G~i~~~g~~~~~~~ 74 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF------------LEKPSEGAIIVNGQNINLVR 74 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECCEEE
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEccccc
Confidence 34567888898778999999998 999999999999999999999999 999999999999998752
Q ss_pred --------ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCC---cc-------------ccccCHhHH-hhhhHH
Q 020346 212 --------VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ---PS-------------LLKVTKQSL-AQTFPE 262 (327)
Q Consensus 212 --------~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~---~~-------------l~~~~~~~l-~~~~~~ 262 (327)
.+... ....++.++|+||++.. ++.|+..+.. .. ++.+...+. .+..
T Consensus 75 ~~~~~~~~~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-- 150 (262)
T 1b0u_A 75 DKDGQLKVADKNQ--LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-- 150 (262)
T ss_dssp CTTSSEEESCHHH--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--
T ss_pred cccccccccChhh--HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--
Confidence 11100 00134569999997522 2333322210 00 000111111 1111
Q ss_pred HHHhcCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 263 IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 263 ~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
...|||||+||+++++++ +.+|.++|+|+| ...+...++++++.+.
T Consensus 151 -~~~LSgGq~qRv~lAraL-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 202 (262)
T 1b0u_A 151 -PVHLSGGQQQRVSIARAL-AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202 (262)
T ss_dssp -GGGSCHHHHHHHHHHHHH-HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred -cccCCHHHHHHHHHHHHH-hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC
Confidence 224999999999999999 999999999955 4556666777776543
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.83 E-value=1.2e-22 Score=188.91 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=109.0
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|.++.
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN------------LYQPTGGKVLLDGEPLV 84 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCCEEEECCEEcc
Confidence 446788889975 67899999998 999999999999999999999999 99999999999999886
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccc---c-------CHhHHhhhh--------HHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLK---V-------TKQSLAQTF--------PEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~---~-------~~~~l~~~~--------~~~~~~LSg 269 (327)
..+... .++.++|+||++.. ++.|+..+....... + ...++...+ .+....|||
T Consensus 85 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 159 (271)
T 2ixe_A 85 QYDHHY-----LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSG 159 (271)
T ss_dssp GBCHHH-----HHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCH
T ss_pred cCCHHH-----HhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCH
Confidence 544221 34569999997532 333333222111000 0 000111111 011234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+||+++++++ +.+|.++|+|+| .....+.++++++
T Consensus 160 Gq~QRv~lAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 160 GQRQAVALARAL-IRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp HHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999 999999999965 3445555555555
No 27
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.83 E-value=7.9e-23 Score=190.98 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=109.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec--c
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG--E 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~--~ 211 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++. .
T Consensus 22 l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA------------YEPATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTBCCC---
T ss_pred EEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCeEEEECCEEccccc
Confidence 45677888898778999999998 999999999999999999999999 99999999999998875 3
Q ss_pred ccccCCCcceeeEEEEEEEccCC------CeEEeCcccCCcc---c-cccCH---hHHhhhhH---------HHHHhcCc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG------GYLADTPGFNQPS---L-LKVTK---QSLAQTFP---------EIKEMLKA 269 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~------~~i~Dtpg~~~~~---l-~~~~~---~~l~~~~~---------~~~~~LSg 269 (327)
.+... .++.++|+||++. .++.|+..+.... + ..... ..+..... .....|||
T Consensus 90 ~~~~~-----~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 164 (279)
T 2ihy_A 90 YSAET-----VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLST 164 (279)
T ss_dssp CCHHH-----HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred CCHHH-----HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCH
Confidence 22111 3456999999631 1333433221100 0 00000 01111111 11224999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+||+++++++ +.+|.++|+||| ...+.+.++++++...
T Consensus 165 GqkqRv~lAraL-~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~ 210 (279)
T 2ihy_A 165 GEKQRVMIARAL-MGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210 (279)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC
Confidence 999999999999 999999999965 4555666677776543
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.83 E-value=2e-22 Score=184.30 Aligned_cols=151 Identities=15% Similarity=0.254 Sum_probs=107.5
Q ss_pred CceeeccC-cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
++.+.++| ++..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER------------FYQPTAGEITIDGQPIDNISL 71 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT------------SSCCSBSCEEETTEESTTTSC
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEhhhCCH
Confidence 46778888 5667999999998 999999999999999999999999 999999999999998876543
Q ss_pred cCCCcceeeEEEEEEEccCCC---eEEeCcccC-CccccccCHhHHhh------------hhH--------HHHHhcCcc
Q 020346 215 KSGRGKHTTRHVSLLPLSGGG---YLADTPGFN-QPSLLKVTKQSLAQ------------TFP--------EIKEMLKAN 270 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~-~~~l~~~~~~~l~~------------~~~--------~~~~~LSgG 270 (327)
.. .++.++|+||++.. ++.|+..+. ... .....+.. .+| +....||||
T Consensus 72 ~~-----~~~~i~~v~q~~~l~~~tv~enl~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 143 (243)
T 1mv5_A 72 EN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEGD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (243)
T ss_dssp SC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTSC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred HH-----HHhhEEEEcCCCccccccHHHHHhhhccCC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHH
Confidence 22 34568999997533 333443332 111 11111111 111 001249999
Q ss_pred ccccccccccccccCCceEEcccHH------HHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
|+||+++++++ +.+|.++++|+|. ..+...+++.++.
T Consensus 144 q~qrv~lAral-~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 144 QRQRLAIARAF-LRNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HHHHHHHHHHH-HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999653 3334445555554
No 29
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.83 E-value=9.1e-23 Score=183.61 Aligned_cols=152 Identities=15% Similarity=0.197 Sum_probs=107.6
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++|++ .+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++. .
T Consensus 11 l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g~~~~--~ 75 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST------------YLKPLKGEIIYNGVPIT--K 75 (214)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEETTEEGG--G
T ss_pred EEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCeEEEECCEEhh--h
Confidence 446778889988 8999999998 999999999999999999999999 99999999999998875 1
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCcccc-ccCHhHHhhhh--------HHHHHhcCcccccccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLL-KVTKQSLAQTF--------PEIKEMLKANEPAKCSFNNC 280 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~-~~~~~~l~~~~--------~~~~~~LSgGq~q~~~~~~~ 280 (327)
.++.++|+||++.. ++.|+..+...... ......+.... ......|||||+||++++++
T Consensus 76 --------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 76 --------VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp --------GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred --------hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHH
Confidence 23468999997532 22233222100000 00111111111 11123499999999999999
Q ss_pred ccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 281 LHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 281 ~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
+ +.+|.++++||| ...+...++++++.+.
T Consensus 148 L-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 148 L-LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp T-TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred H-HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 9 999999999966 3555566666666543
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.81 E-value=4e-22 Score=184.79 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=106.7
Q ss_pred CceeeccCc--c---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 137 YEPLFCSVE--S---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 137 ~~~~~~s~~--~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++.+.++|+ + ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G------------l~~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG------------LIEPTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEECC
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCCcEEEECCEECc
Confidence 456778886 3 46899999998 999999999999999999999999 99999999999998875
Q ss_pred cccccCCCcceeeEEEEEEEccC-C----CeEEeCcccCCcc-c-------------cccCHh--HHhhhhHHHHHhcCc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG-G----GYLADTPGFNQPS-L-------------LKVTKQ--SLAQTFPEIKEMLKA 269 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~-~----~~i~Dtpg~~~~~-l-------------~~~~~~--~l~~~~~~~~~~LSg 269 (327)
.. . .++.++|+||++ . .++.|+..+.... . +.+... +..+.. ...|||
T Consensus 73 ~~---~-----~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---~~~LSg 141 (266)
T 2yz2_A 73 GY---E-----IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV---PFFLSG 141 (266)
T ss_dssp HH---H-----HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCC---GGGSCH
T ss_pred hH---H-----hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCC---hhhCCH
Confidence 42 1 345699999973 1 2222332221100 0 001111 111111 234999
Q ss_pred cccccccccccccccCCceEEcccH------HHHHHHHHHHHHHHHh
Q 020346 270 NEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 270 Gq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
||+||+++++++ +.+|.++|+|+| ...+...++++++...
T Consensus 142 Gq~qRv~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 142 GEKRRVAIASVI-VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp HHHHHHHHHHHH-TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence 999999999999 999999999955 4566666777776543
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.81 E-value=4.8e-22 Score=181.78 Aligned_cols=147 Identities=13% Similarity=0.154 Sum_probs=103.4
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.++|++ .++++++.+ + ++++|+||||||||||+++|+| +++|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~- 67 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAG------------IVKPDRGEVRLNGADITPLPP- 67 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHT------------SSCCSEEEEEETTEECTTSCT-
T ss_pred EEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEECCEECCcCch-
Confidence 4567777864 489999998 7 9999999999999999999999 999999999999998765321
Q ss_pred CCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------------cccCHhHHhhhhHHHHHhcCcccccccccc
Q 020346 216 SGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------------LKVTKQSLAQTFPEIKEMLKANEPAKCSFN 278 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------------~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~ 278 (327)
.++.++|+||++.. ++.|+..+..... +.+...+..+.. ...|||||+||++++
T Consensus 68 ------~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 68 ------ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK---PARLSGGERQRVALA 138 (240)
T ss_dssp ------TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC---GGGSCHHHHHHHHHH
T ss_pred ------hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCC---hhhCCHHHHHHHHHH
Confidence 23568999997522 2333332211100 000000111111 224999999999999
Q ss_pred ccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 279 NCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 279 ~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
+++ +.+|.++++|+| ...+...++++++..
T Consensus 139 ral-~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 139 RAL-VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHH-TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 999999999955 455666677777644
No 32
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.80 E-value=7.7e-21 Score=193.91 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=111.7
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|++ ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++.+
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g------------~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR------------FYDVDSGSICLDGHDVRD 409 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCCEEEECCEEhhh
Confidence 567889999974 67999999998 999999999999999999999999 999999999999999876
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCC-ccccc---------cCHhHHhhhhHH--------HHHhcCcc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQ-PSLLK---------VTKQSLAQTFPE--------IKEMLKAN 270 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~-~~l~~---------~~~~~l~~~~~~--------~~~~LSgG 270 (327)
.+... .+++++++||++. .++.|+..+.. +.... ....+..+.+|+ -...||||
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 410 YKLTN-----LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred CCHHH-----HhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 65432 5678999999863 23444443322 11100 011111111110 01249999
Q ss_pred ccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|+||+++++++ +.+|.++++||| ...+...+.++++
T Consensus 485 q~qr~~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 485 QRQRVAIARAL-LRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999 999999999965 3444445555554
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.80 E-value=8.2e-22 Score=192.10 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=103.7
Q ss_pred cCCceeeccC--cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~--~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++| ++..+++++++.+ +|++++|+||||||||||+++|+| +++ ++|+|+++|+++..
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG------------l~~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR------------LLN-TEGEIQIDGVSWDS 86 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT------------CSE-EEEEEEESSCBTTS
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC------------CCC-CCeEEEECCEECCc
Confidence 4567889999 5678999999998 899999999999999999999999 877 89999999999877
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc--------ccccCHhHHhhhhHHHH--------HhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS--------LLKVTKQSLAQTFPEIK--------EMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~--------l~~~~~~~l~~~~~~~~--------~~LSgGq~ 272 (327)
.+... .++.++|+||++.. ++.++..+.... ++.+.+.++.+.+|... ..|||||+
T Consensus 87 ~~~~~-----~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 87 ITLEQ-----WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp SCHHH-----HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred CChHH-----HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 65432 45679999998633 222332211100 11111122222222110 01999999
Q ss_pred ccccccccccccCCceEEcccHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
||+++++++ +.+|+++|+|+|.
T Consensus 162 QRvalARAL-~~~P~lLLLDEPt 183 (390)
T 3gd7_A 162 QLMCLARSV-LSKAKILLLDEPS 183 (390)
T ss_dssp HHHHHHHHH-HTTCCEEEEESHH
T ss_pred HHHHHHHHH-hcCCCEEEEeCCc
Confidence 999999999 9999999999774
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.80 E-value=2.1e-21 Score=179.50 Aligned_cols=152 Identities=16% Similarity=0.260 Sum_probs=107.6
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++| +|+|.++|.++.
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR------------FYDA-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCC-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc------------cCCC-CeEEEECCEEhh
Confidence 456788889975 35899999998 999999999999999999999999 8887 899999999886
Q ss_pred cccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCccccccCHhHHhhh-----hHHH---------------HHhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPSLLKVTKQSLAQT-----FPEI---------------KEML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~l~~~~~~~l~~~-----~~~~---------------~~~L 267 (327)
..+... .++.++|+||++.. ++.|+..+.... .....+... ..+. ...|
T Consensus 85 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 85 KYNRNS-----IRSIIGIVPQDTILFNETIKYNILYGKLD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp GBCHHH-----HHTTEEEECSSCCCCSEEHHHHHHTTCTT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred hcCHHH-----HhccEEEEcCCCcccccCHHHHHhccCCC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 554221 34569999997633 233333222111 011111100 0111 1249
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+++++++ +.+|.++|+|+| ...+...++++++.
T Consensus 157 SgGqkqRv~lAraL-~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 157 SGGERQRIAIARCL-LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp CHHHHHHHHHHHHH-HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999 999999999954 45555566666653
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.80 E-value=1.4e-21 Score=179.74 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=99.3
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++.+ +|++++|+||||||||||+|+|+| +++|+ |+|.++|.++...+... .++.+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~G------------l~~p~-G~i~~~g~~~~~~~~~~-----~~~~i 75 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG------------MTSGK-GSIQFAGQPLEAWSATK-----LALHR 75 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT------------SSCCE-EEEEETTEEGGGSCHHH-----HHHHE
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCC-eEEEECCEECCcCCHHH-----HhceE
Confidence 5789999998 999999999999999999999999 99999 99999999886543221 34569
Q ss_pred EEEEccCCC----eEEeCcccCCc-c---------ccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc-----
Q 020346 227 SLLPLSGGG----YLADTPGFNQP-S---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG----- 287 (327)
Q Consensus 227 ~~v~q~~~~----~i~Dtpg~~~~-~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~----- 287 (327)
+|+||++.. ++.|+..+... . ++.+...+..+.. ...|||||+||+++++++ +.+|.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSgGq~qrv~lAraL-~~~p~~~~~~ 151 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---TNQLSGGEWQRVRLAAVV-LQITPQANPA 151 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSB---GGGCCHHHHHHHHHHHHH-HHHCTTTCTT
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCC---hhhCCHHHHHHHHHHHHH-HcCCCcCCCC
Confidence 999997532 33333322110 0 0001111111111 234999999999999999 89999
Q ss_pred --eEEcccH------HHHHHHHHHHHHHHH
Q 020346 288 --CVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 288 --~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
++++|+| ...+...++++++..
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~ 181 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALSQ 181 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 9999965 455666667777644
No 36
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=5.8e-21 Score=195.50 Aligned_cols=155 Identities=13% Similarity=0.260 Sum_probs=113.6
Q ss_pred cCCceeeccCcc-hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.++.++++|+. ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++...
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g------------~~~p~~G~i~~~g~~i~~~ 422 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR------------FYDVDRGQILVDGIDIRKI 422 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTT------------SSCCSEEEEEETTEEGGGS
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CcCCCCeEEEECCEEhhhC
Confidence 557788999964 56899999998 899999999999999999999999 9999999999999999887
Q ss_pred cccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccc---------cCHhHHhhhhH--------HHHHhcCcccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLK---------VTKQSLAQTFP--------EIKEMLKANEP 272 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~---------~~~~~l~~~~~--------~~~~~LSgGq~ 272 (327)
+... .+++++++||++. +++.|+..+..+.... ....+....+| +-...|||||+
T Consensus 423 ~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 423 KRSS-----LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp CHHH-----HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred CHHH-----HHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 6543 5678999999862 3444444333221110 11111111111 11235999999
Q ss_pred ccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
||+++|+++ +.+|.++++||| ...+...+.++++
T Consensus 498 Qrv~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 537 (598)
T 3qf4_B 498 QLLAITRAF-LANPKILILDEATSNVDTKTEKSIQAAMWKL 537 (598)
T ss_dssp HHHHHHHHH-HTCCSEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999 999999999954 4444455555555
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.79 E-value=1.3e-22 Score=186.39 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=101.7
Q ss_pred CCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeeccc
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~~ 212 (327)
.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| + ++|++|+|.++|.++...
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G------------l~~~~p~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG------------DPEYTVERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT------------CTTCEEEEEEEEETTEECTTS
T ss_pred EEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCceEEEECCEECCCC
Confidence 4567888888778999999998 999999999999999999999999 6 799999999999988654
Q ss_pred cccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccccc--cC----HhHHhhhh----------HHHHHh-cCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSLLK--VT----KQSLAQTF----------PEIKEM-LKANE 271 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l~~--~~----~~~l~~~~----------~~~~~~-LSgGq 271 (327)
+.... .+..++++||++.. ++.++..+....... .. ...+.... ...... |||||
T Consensus 73 ~~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq 148 (250)
T 2d2e_A 73 SPDER----ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGE 148 (250)
T ss_dssp CHHHH----HHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----H
T ss_pred CHHHH----HhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHH
Confidence 42210 12347788886532 222222111000000 00 01111111 111124 99999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
+||+++++++ +.+|.++|+|+| ...+...++++++.
T Consensus 149 kQrv~iAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 149 KKRNEILQLL-VLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp HHHHHHHHHH-HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 9999999999 999999999966 35555556666653
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.79 E-value=3.7e-21 Score=196.70 Aligned_cols=156 Identities=14% Similarity=0.237 Sum_probs=112.4
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.++++|++ ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|.++.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g------------~~~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR------------LYDPASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTT------------SSCCSEEEEEETTEETT
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCcEEEECCEEhh
Confidence 567788999964 35899999998 999999999999999999999999 99999999999999987
Q ss_pred cccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHhHHhhhh-----HHHH---------------Hhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQSLAQTF-----PEIK---------------EML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~~l~~~~-----~~~~---------------~~L 267 (327)
+.+... .+++++++||++. .++.|+..+..+.......+++.+.. .++. ..|
T Consensus 410 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~L 484 (595)
T 2yl4_A 410 QLNPVW-----LRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484 (595)
T ss_dssp TBCHHH-----HHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCC
T ss_pred hCCHHH-----HHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcC
Confidence 765432 4567999999863 24444443322210001111111110 0110 349
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+++++++ +.+|+++++||| ...+...+.++++.
T Consensus 485 SgGq~qrv~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 530 (595)
T 2yl4_A 485 SGGQKQRIAIARAL-LKNPKILLLDEATSALDAENEYLVQEALDRLM 530 (595)
T ss_dssp CHHHHHHHHHHHHH-HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999954 45555556666553
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.79 E-value=7.6e-21 Score=193.84 Aligned_cols=155 Identities=16% Similarity=0.233 Sum_probs=111.8
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++..
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g------------~~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR------------FYDVTSGQILIDGHNIKD 407 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT------------SSCCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhc------------CCCCCCcEEEECCEEhhh
Confidence 556788999964 46899999998 899999999999999999999999 999999999999999987
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHh---------HHhhhhHH--------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQ---------SLAQTFPE--------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~---------~l~~~~~~--------~~~~LSgGq 271 (327)
.+... .+++++++||++. .++.|+..+..+....-+.. +.....|+ -...|||||
T Consensus 408 ~~~~~-----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 408 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----HhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 76443 5677999999752 34445544432211100000 00111110 012499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+++|+++ +.+|+++++||| ...+...+.++++
T Consensus 483 ~Qrv~lAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 483 KQRLSIARIF-LNNPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp HHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 9999999999 999999999965 3444444555544
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.79 E-value=5.9e-21 Score=194.78 Aligned_cols=153 Identities=14% Similarity=0.264 Sum_probs=112.0
Q ss_pred cCCceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|++ ..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g------------~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR------------FYDIDEGHILMDGHDLRE 409 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT------------TTCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhh------------ccCCCCCeEEECCEEccc
Confidence 456788999973 67999999998 999999999999999999999999 999999999999999877
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCC-ccccccCHhHHhhh-----hHHH-H--------------Hhc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQ-PSLLKVTKQSLAQT-----FPEI-K--------------EML 267 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~-~~l~~~~~~~l~~~-----~~~~-~--------------~~L 267 (327)
.+... .+++++++||++. .++.|+..+.. +. ...+++.+. ..++ . ..|
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 410 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYARTEE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTTSC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred cCHHH-----HHhhCeEEccCCcCCCCCHHHHHhccCCCC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 65332 4567999999863 24444444322 11 111111110 0111 1 249
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
||||+||+++++++ +.+|.++++||| ...+...+.++++.
T Consensus 482 SgGq~qrl~iAral-~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b60_A 482 SGGQRQRIAIARAL-LRDSPILILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_dssp CHHHHHHHHHHHHH-HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HhCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 99999999999999 999999999965 34444555666553
No 41
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.78 E-value=4e-21 Score=178.21 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=105.3
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc--ccccccceeecceeecc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW--FEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~--~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|++..+++++++.+ +|++++|+||||||||||+|+|+| + ++|++|+|+++|.++..
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G------------l~~~~p~~G~I~~~g~~i~~ 88 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG------------REDYEVTGGTVEFKGKDLLA 88 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT------------CTTCEEEEEEEEETTEEGGG
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCCeEEEECCEECCc
Confidence 45678888898778999999998 999999999999999999999999 6 57999999999998865
Q ss_pred ccccCCCcceeeEEEEEEEccCCC----eEEeCcccCC------ccccccCH----hHHhhhh----------HHHHH-h
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQ------PSLLKVTK----QSLAQTF----------PEIKE-M 266 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~------~~l~~~~~----~~l~~~~----------~~~~~-~ 266 (327)
.+.... .+..+++++|++.. ++.++..+.. ........ ..+.+.. ..... .
T Consensus 89 ~~~~~~----~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~ 164 (267)
T 2zu0_C 89 LSPEDR----AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG 164 (267)
T ss_dssp SCHHHH----HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTT
T ss_pred CCHHHH----hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 542210 12348999997532 1111111100 00000000 0011100 00111 3
Q ss_pred cCccccccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
|||||+||+++++++ +.+|.++|+|+| ...+.+.++++++
T Consensus 165 LSgGq~QRv~iAraL-~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 165 FSGGEKKRNDILQMA-VLEPELCILDESDSGLDIDALKVVADGVNSL 210 (267)
T ss_dssp CCHHHHHHHHHHHHH-HHCCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999 999999999965 3445555555555
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=8.7e-21 Score=193.83 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=111.9
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.++++|. +..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.++|+++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g------------~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR------------LIDPERGRVEVDELDVRT 409 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT------------SSCCSEEEEEESSSBGGG
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CccCCCcEEEECCEEccc
Confidence 55678899994 457999999998 899999999999999999999999 999999999999999988
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHh---HHhhhhHHH--------------HHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQ---SLAQTFPEI--------------KEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~---~l~~~~~~~--------------~~~LSgGq 271 (327)
.+... .+++++++||++. .++.|+..+..+....-... +.....+.+ ...|||||
T Consensus 410 ~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 410 VKLKD-----LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp BCHHH-----HHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred CCHHH-----HHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 76543 5678999999863 24445544432211100000 011111111 12499999
Q ss_pred cccccccccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
+||+++++++ +.+|+++|+||| ...+...+.++++
T Consensus 485 rQrv~lARal-~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 485 KQRLSIARAL-VKKPKVLILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp HHHHHHHHHH-HTCCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 9999999999 999999999955 3444444445444
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.78 E-value=6.7e-21 Score=172.79 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=92.6
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|. +..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g----- 69 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG------------ELEPSEGKIKHSG----- 69 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT------------SSCCSEEEEEECS-----
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCccEEEECC-----
Confidence 34567888884 467899999998 999999999999999999999999 9999999999987
Q ss_pred ccccCCCcceeeEEEEEEEccCCC---eEEeCcccCCcc----c----cccCHhHHhhhhHHH--------HHhcCcccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGGG---YLADTPGFNQPS----L----LKVTKQSLAQTFPEI--------KEMLKANEP 272 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg~~~~~----l----~~~~~~~l~~~~~~~--------~~~LSgGq~ 272 (327)
.++|+||.+.. ++.|+..+.... . +.....+....++.. ...|||||+
T Consensus 70 -------------~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqk 136 (229)
T 2pze_A 70 -------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 136 (229)
T ss_dssp -------------CEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHH
T ss_pred -------------EEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHH
Confidence 27788886532 223332221100 0 000001111111100 135999999
Q ss_pred ccccccccccccCCceEEcccHH
Q 020346 273 AKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 273 q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
||+++++++ +.+|.++++|+|.
T Consensus 137 qrv~lAral-~~~p~lllLDEPt 158 (229)
T 2pze_A 137 ARISLARAV-YKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHHHHH-HSCCSEEEEESTT
T ss_pred HHHHHHHHH-hcCCCEEEEECcc
Confidence 999999999 9999999999663
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.78 E-value=9.2e-21 Score=174.51 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=100.2
Q ss_pred CCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
.++.+.++|+ +..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|.+
T Consensus 6 ~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~I~~--------- 64 (253)
T 2nq2_C 6 SVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG------------IHRPIQGKIEV--------- 64 (253)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTT------------SSCCSEEEEEE---------
T ss_pred EEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEE---------
Confidence 4567888887 778999999998 999999999999999999999999 99999999871
Q ss_pred ccCCCcceeeEEEEEEEccCCC----eEEeCcccCCccc-------cccCHhHHhhhhH---------HHHHhcCccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG----YLADTPGFNQPSL-------LKVTKQSLAQTFP---------EIKEMLKANEPA 273 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~----~i~Dtpg~~~~~l-------~~~~~~~l~~~~~---------~~~~~LSgGq~q 273 (327)
.+.++|+||++.. ++.|+..+..... .......+..... .....|||||+|
T Consensus 65 ---------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 135 (253)
T 2nq2_C 65 ---------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQ 135 (253)
T ss_dssp ---------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred ---------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHH
Confidence 2358899997532 3333332211000 0000011111111 112249999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|.++++|+| ...+...+++.++..
T Consensus 136 rv~lAraL-~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 176 (253)
T 2nq2_C 136 LILIARAI-ASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176 (253)
T ss_dssp HHHHHHHH-HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 999999999955 455666677776654
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.77 E-value=9.1e-21 Score=209.20 Aligned_cols=142 Identities=15% Similarity=0.259 Sum_probs=111.0
Q ss_pred hcCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 134 TWGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 134 ~~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.+.|+.++++|.+ .++|+++++.+ +|+++||||+||||||||+++|.| +|+|++|+|.+||.++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r------------l~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER------------FYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT------------SSCCSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc------------CccCCCCEEEECCEEh
Confidence 3568899999964 35899999998 999999999999999999999999 9999999999999999
Q ss_pred ccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------hhHHHH--------------Hh
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------TFPEIK--------------EM 266 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------~~~~~~--------------~~ 266 (327)
.+++.+. .++++++|||++ ++++.||..+.... ...+.+++.+ ..+.+. ..
T Consensus 1144 ~~i~~~~-----lR~~i~~V~Qdp~LF~gTIreNI~~gld~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~ 1217 (1321)
T 4f4c_A 1144 KTLNPEH-----TRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ 1217 (1321)
T ss_dssp TTBCHHH-----HHTTEEEECSSCCCCSEEHHHHHSSSSCT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCS
T ss_pred hhCCHHH-----HHhheEEECCCCEeeCccHHHHHhccCCC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcc
Confidence 9988765 788899999986 45666665543211 1122222221 111111 13
Q ss_pred cCccccccccccccccccCCceEEcccH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|||||+||+++|+++ +.+|.++|+||+
T Consensus 1218 LSgGQrQriaiARAl-lr~~~ILiLDEa 1244 (1321)
T 4f4c_A 1218 LSGGQKQRIAIARAL-VRNPKILLLDEA 1244 (1321)
T ss_dssp SCHHHHHHHHHHHHH-HSCCSEEEEESC
T ss_pred cCHHHHHHHHHHHHH-HhCCCEEEEeCc
Confidence 899999999999999 999999999954
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.77 E-value=4.1e-21 Score=177.93 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=101.9
Q ss_pred CceeeccCcc----hhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 137 YEPLFCSVES----KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
++.+.++|++ ..+++++++.++|++++|+||||||||||+++|+| ++ |++|+|.++|.++...
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~G------------l~-p~~G~I~~~g~~~~~~ 70 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG------------LL-PYSGNIFINGMEVRKI 70 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTT------------SS-CCEEEEEETTEEGGGC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhC------------CC-CCCcEEEECCEECcch
Confidence 4567788876 67899999997899999999999999999999999 89 9999999999987542
Q ss_pred cccCCCcceeeEEEE-EEEccCCC--eEEeCcccCCc--c---------ccccCHh-HHhhhhHHHHHhcCccccccccc
Q 020346 213 STKSGRGKHTTRHVS-LLPLSGGG--YLADTPGFNQP--S---------LLKVTKQ-SLAQTFPEIKEMLKANEPAKCSF 277 (327)
Q Consensus 213 s~~~~~g~~tt~~i~-~v~q~~~~--~i~Dtpg~~~~--~---------l~~~~~~-~l~~~~~~~~~~LSgGq~q~~~~ 277 (327)
. .++.++ |+||++.. ++.|+..+... . ++.+... +..... ...|||||+||+++
T Consensus 71 -~-------~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---~~~LSgGqkqRv~l 139 (263)
T 2pjz_A 71 -R-------NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRK---LYKLSAGQSVLVRT 139 (263)
T ss_dssp -S-------CCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSB---GGGSCHHHHHHHHH
T ss_pred -H-------HhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCC---hhhCCHHHHHHHHH
Confidence 1 134688 99997532 22222221100 0 0011111 111111 23499999999999
Q ss_pred cccccccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 278 NNCLHLGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 278 ~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
++++ +.+|.++++|+| ...+...++++++
T Consensus 140 AraL-~~~p~lllLDEPts~LD~~~~~~l~~~L~~~ 174 (263)
T 2pjz_A 140 SLAL-ASQPEIVGLDEPFENVDAARRHVISRYIKEY 174 (263)
T ss_dssp HHHH-HTCCSEEEEECTTTTCCHHHHHHHHHHHHHS
T ss_pred HHHH-HhCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 9999 999999999965 3444444555544
No 47
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.76 E-value=2.7e-20 Score=169.73 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=92.4
Q ss_pred cCCceeeccCc--chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+.++.+.++|+ +..+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|.++|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g----- 66 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA------------EMDKVEGHVAIKG----- 66 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------CSEEEEEEEEECS-----
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECC-----
Confidence 34567888886 467899999998 999999999999999999999999 9999999999987
Q ss_pred ccccCCCcceeeEEEEEEEccCC---CeEEeCcccCCccccccCHhHHhh---hhHH--------------HHHhcCccc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSGG---GYLADTPGFNQPSLLKVTKQSLAQ---TFPE--------------IKEMLKANE 271 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~~---~~i~Dtpg~~~~~l~~~~~~~l~~---~~~~--------------~~~~LSgGq 271 (327)
.++|+||++. .++.|+..+.... ..-....... .... ....|||||
T Consensus 67 -------------~i~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGq 132 (237)
T 2cbz_A 67 -------------SVAYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQ 132 (237)
T ss_dssp -------------CEEEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHH
T ss_pred -------------EEEEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHH
Confidence 1778888642 2233333222110 0000011110 1111 113499999
Q ss_pred cccccccccccccCCceEEcccHH
Q 020346 272 PAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 272 ~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
+||+++++++ +.+|.++|+|+|.
T Consensus 133 kqRv~lAraL-~~~p~lllLDEPt 155 (237)
T 2cbz_A 133 KQRVSLARAV-YSNADIYLFDDPL 155 (237)
T ss_dssp HHHHHHHHHH-HHCCSEEEEESTT
T ss_pred HHHHHHHHHH-hcCCCEEEEeCcc
Confidence 9999999999 9999999999663
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=5.9e-20 Score=202.76 Aligned_cols=142 Identities=17% Similarity=0.255 Sum_probs=112.3
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.|+.++|+|.+ .++|+++++.+ +|++++||||||||||||+++|+| +|+|++|+|.+||.++.
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~------------~~~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR------------YYDVLKGKITIDGVDVR 483 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT------------SSCCSEEEEEETTEETT
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc------------ccccccCcccCCCccch
Confidence 567889999953 46899999998 999999999999999999999999 99999999999999999
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHh---HHhhhhHHHHH--------------hcCcc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQ---SLAQTFPEIKE--------------MLKAN 270 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~---~l~~~~~~~~~--------------~LSgG 270 (327)
+++... .+.+++|++|++ ++++.|+..+..+....-+.. +.....+.+.. .||||
T Consensus 484 ~~~~~~-----lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGG 558 (1321)
T 4f4c_A 484 DINLEF-----LRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGG 558 (1321)
T ss_dssp TSCHHH-----HHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHH
T ss_pred hccHHH-----HhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHH
Confidence 987654 678899999986 557777776664432111111 11111122221 39999
Q ss_pred ccccccccccccccCCceEEcccH
Q 020346 271 EPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 271 q~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
|+||+++|+++ +.+|.++|+||+
T Consensus 559 QkQRiaiARAl-~~~~~IliLDE~ 581 (1321)
T 4f4c_A 559 QKQRIAIARAL-VRNPKILLLDEA 581 (1321)
T ss_dssp HHHHHHHHHHH-TTCCSEEEEEST
T ss_pred HHHHHHHHHHH-ccCCCEEEEecc
Confidence 99999999999 999999999965
No 49
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.72 E-value=7e-18 Score=156.00 Aligned_cols=141 Identities=23% Similarity=0.323 Sum_probs=108.1
Q ss_pred ccccccccEEEEEeecCCCCCChH-HHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~-~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
+..++|+|+++.|.++..|..+.. .++ ++ ++++++|+||+||.+++..+.|...+++.|+++ .+|+.+..+
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~g 87 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAYGVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPR 87 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCTTSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCH
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcChHHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcC
Confidence 457899999999999998865532 344 32 899999999999999877778888887788888 899988889
Q ss_pred HHHHHhhcCCC--EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEE
Q 020346 150 LDSLLQRLRDQ--TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (327)
Q Consensus 150 l~~l~~~l~g~--~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~ 227 (327)
++.+...+... +++++|.||+|||||+|.|.|... + .++.. ++ +|+...
T Consensus 88 i~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~------------~----------~~~~~---~g----~T~~~~ 138 (262)
T 3cnl_A 88 KVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA------------S----------SVGAQ---PG----ITKGIQ 138 (262)
T ss_dssp HHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC---------------------------------------CCSC
T ss_pred HHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc------------c----------ccCCC---CC----CccceE
Confidence 99988888664 999999999999999999999431 0 11111 12 555555
Q ss_pred EEEccCCCeEEeCcccCCccc
Q 020346 228 LLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 228 ~v~q~~~~~i~Dtpg~~~~~l 248 (327)
++....+..++||||+..+.+
T Consensus 139 ~~~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 139 WFSLENGVKILDTPGILYKNI 159 (262)
T ss_dssp EEECTTSCEEESSCEECCCCC
T ss_pred EEEeCCCEEEEECCCcccCcC
Confidence 666666789999999997754
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=4.1e-19 Score=195.56 Aligned_cols=139 Identities=17% Similarity=0.304 Sum_probs=105.6
Q ss_pred cCCceeeccCcc---hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.++++|.+ ..+|+++++.+ +|++++||||||||||||+++|.| +++|++|+|.++|.++.
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g------------~~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR------------LYDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT------------SSCCSEEEEEETTEEGG
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEHH
Confidence 557889999964 35899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhh------hhHHHH--------------Hhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQ------TFPEIK--------------EML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~------~~~~~~--------------~~L 267 (327)
..+... .+++++++||++ .+++.|+..+..+. ...+++.. ..+.+. ..|
T Consensus 456 ~~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 527 (1284)
T 3g5u_A 456 TINVRY-----LREIIGVVSQEPVLFATTIAENIRYGRED---VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527 (1284)
T ss_dssp GSCHHH-----HHHHEEEECSSCCCCSSCHHHHHHHHCSS---CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSS
T ss_pred hCCHHH-----HHhheEEEcCCCccCCccHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCcc
Confidence 876543 567799999986 22344443332211 11111111 111111 149
Q ss_pred CccccccccccccccccCCceEEcccH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
||||+||+++|+++ +.+|+++|+|||
T Consensus 528 SgGq~QriaiARal-~~~p~iliLDEp 553 (1284)
T 3g5u_A 528 SGGQKQRIAIARAL-VRNPKILLLDEA 553 (1284)
T ss_dssp CHHHHHHHHHHHHH-HHCCSEEEEEST
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEECC
Confidence 99999999999999 999999999965
No 51
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.72 E-value=1.8e-17 Score=154.81 Aligned_cols=143 Identities=25% Similarity=0.366 Sum_probs=102.8
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhH
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (327)
..++++|+++.|.++..|..+. ..+++++ .++|.++|+||+||.+.+..+.|...++..+++++.+|+.+..++
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred HHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccH
Confidence 3689999999999999886654 3677776 589999999999999987777888888777889899998766555
Q ss_pred HHHHhh----c--------------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 151 DSLLQR----L--------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 151 ~~l~~~----l--------------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+.+... + .+-+++|+|.||||||||+|.|.|... ..+
T Consensus 94 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~-------------------------~~~ 148 (282)
T 1puj_A 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI-------------------------AKT 148 (282)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC-------------------------C--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce-------------------------eec
Confidence 443221 1 123799999999999999999999431 112
Q ss_pred cccCCCcceeeEEEEEEEccCCCeEEeCcccCCccc
Q 020346 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248 (327)
Q Consensus 213 s~~~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l 248 (327)
+..++ +|++..++.......++||||+..+..
T Consensus 149 ~~~~g----~T~~~~~~~~~~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 149 GDRPG----ITTSQQWVKVGKELELLDTPGILWPKF 180 (282)
T ss_dssp --------------CCEEETTTEEEEECCCCCCSCC
T ss_pred CCCCC----eeeeeEEEEeCCCEEEEECcCcCCCCC
Confidence 22222 666666676666789999999987643
No 52
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.70 E-value=4.1e-19 Score=166.71 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=83.5
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+.++.+.++ ...+++++++.+ +|++++|+||||||||||+++|+| +++|++|+|+++|
T Consensus 41 l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~G------------l~~p~~G~I~~~g------- 99 (290)
T 2bbs_A 41 LSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG------------ELEPSEGKIKHSG------- 99 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTT------------SSCEEEEEEECCS-------
T ss_pred EEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCcEEEECC-------
Confidence 334444443 356899999998 899999999999999999999999 9999999999986
Q ss_pred ccCCCcceeeEEEEEEEccCCC---eEEeCcc-cCCcc------ccccCHhHHhhhhHH--------HHHhcCccccccc
Q 020346 214 TKSGRGKHTTRHVSLLPLSGGG---YLADTPG-FNQPS------LLKVTKQSLAQTFPE--------IKEMLKANEPAKC 275 (327)
Q Consensus 214 ~~~~~g~~tt~~i~~v~q~~~~---~i~Dtpg-~~~~~------l~~~~~~~l~~~~~~--------~~~~LSgGq~q~~ 275 (327)
.++|+||.+.. ++.|+.. ..... ++.....+....++. ....|||||+||+
T Consensus 100 -----------~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 100 -----------RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp -----------CEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred -----------EEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 27788886532 2223221 10000 000011111111111 1135999999999
Q ss_pred cccccccccCCceEEcccHH
Q 020346 276 SFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 276 ~~~~~~h~~ep~~~v~~~~~ 295 (327)
++++++ +.+|.++++|+|.
T Consensus 169 ~lAraL-~~~p~lllLDEPt 187 (290)
T 2bbs_A 169 SLARAV-YKDADLYLLDSPF 187 (290)
T ss_dssp HHHHHH-HSCCSEEEEESTT
T ss_pred HHHHHH-HCCCCEEEEECCc
Confidence 999999 9999999999663
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=7.9e-19 Score=193.35 Aligned_cols=153 Identities=16% Similarity=0.345 Sum_probs=109.7
Q ss_pred cCCceeeccCcch---hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.++.+.++|.+. .+++++++.+ +|++++|+|+||||||||+++|.| +++|++|+|.++|.++.
T Consensus 1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g------------~~~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER------------FYDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp EEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT------------SSCCSEEEEESSSSCTT
T ss_pred EEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEEcc
Confidence 3466788999643 5899999998 999999999999999999999999 99999999999999998
Q ss_pred cccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHh------------hhhHHH--------HHhc
Q 020346 211 EVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLA------------QTFPEI--------KEML 267 (327)
Q Consensus 211 ~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~------------~~~~~~--------~~~L 267 (327)
..+... .+++++++||++ .+++.|+..+..+.. ....+++. ..+|+- ...|
T Consensus 1099 ~~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~-~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A 1099 QLNVQW-----LRAQLGIVSQEPILFDCSIAENIAYGDNSR-VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp SSCHHH-----HTTSCEEEESSCCCCSSBHHHHHTCCCSSC-CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred cCCHHH-----HHhceEEECCCCccccccHHHHHhccCCCC-CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence 766433 567799999986 334444443322110 01111111 111110 0249
Q ss_pred CccccccccccccccccCCceEEcccH------HHHHHHHHHHHH
Q 020346 268 KANEPAKCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDE 306 (327)
Q Consensus 268 SgGq~q~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e 306 (327)
||||+||+++++++ +.+|.++|+||| ...+...+.+++
T Consensus 1173 SgGq~Qrv~iARal-~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1173 SGGQKQRIAIARAL-VRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp CHHHHHHHHHHHHH-HHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999 999999999955 344444444444
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.58 E-value=1e-16 Score=162.17 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC----
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---- 233 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---- 233 (327)
+|++++|+||||||||||+++|+| +++|++|+|.+++..+ +++||..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~~~~i-----------------~~~~q~~~~~~ 343 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVG------------EITADEGSVTPEKQIL-----------------SYKPQRIFPNY 343 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT------------SSCCSBCCEESSCCCE-----------------EEECSSCCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCeee-----------------Eeechhccccc
Confidence 899999999999999999999999 9999999998765544 3444432
Q ss_pred CCeEEeCcccC------------CccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH------H
Q 020346 234 GGYLADTPGFN------------QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW------E 295 (327)
Q Consensus 234 ~~~i~Dtpg~~------------~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~------~ 295 (327)
..++.++..+. ...++.+...+..+..+ ..|||||+||+.+|+++ +.+|+++|+|+| .
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~LSGGq~QRv~iAraL-~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV---NDLSGGELQKLYIAATL-AKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBG---GGCCHHHHHHHHHHHHH-HSCCSEEEEESTTTTCCHH
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCCh---hhCCHHHHHHHHHHHHH-HcCCCEEEEeCCccCCCHH
Confidence 11221211110 00112222222223333 34999999999999999 999999999966 3
Q ss_pred HHHHHHHHHHHHHH
Q 020346 296 RYQYYFQLLDEIRI 309 (327)
Q Consensus 296 r~~~~~~ll~e~~~ 309 (327)
......++++++..
T Consensus 420 ~~~~i~~~l~~l~~ 433 (538)
T 3ozx_A 420 ERYIVAKAIKRVTR 433 (538)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455566666643
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.56 E-value=6.8e-17 Score=163.48 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=94.7
Q ss_pred ceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce---------eecc
Q 020346 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (327)
Q Consensus 138 ~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i---------~~~g 206 (327)
+.++++|+.. .++++++ .+ +|++++|+|+||||||||+|+|+| +++|++|++ .++|
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~G------------l~~p~~G~~~~~~~~~~~~~~g 91 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAG------------QLIPNLCGDNDSWDGVIRAFRG 91 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHT------------SSCCCTTTTCCSHHHHHHHTTT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCccCcchhhhHHhhCC
Confidence 3577888765 4788888 76 999999999999999999999999 889999996 4566
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCC-------eEEeCccc---CC---ccccccCHhHHhhhhHHHHHhcCccccc
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG-------YLADTPGF---NQ---PSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-------~i~Dtpg~---~~---~~l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.++........ . ....+++++|.... .+.+.... .. ..++.+......+.. ...|||||+|
T Consensus 92 ~~~~~~~~~~~-~--~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~---~~~LSgGekQ 165 (538)
T 1yqt_A 92 NELQNYFEKLK-N--GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLERE---IQHLSGGELQ 165 (538)
T ss_dssp STHHHHHHHHH-T--TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSB---GGGCCHHHHH
T ss_pred ccHHHHHHHHH-H--HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCC---hhhCCHHHHH
Confidence 55432110000 0 11235566663210 00000000 00 001111111111111 2349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|+++|+|+| ...+.+.++++++..
T Consensus 166 Rv~iAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~ 206 (538)
T 1yqt_A 166 RVAIAAAL-LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206 (538)
T ss_dssp HHHHHHHH-HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999 999999999965 455566677777654
No 56
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.56 E-value=1.3e-14 Score=140.13 Aligned_cols=146 Identities=23% Similarity=0.302 Sum_probs=103.5
Q ss_pred ccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHH----HHHHHHh-hhhhcCC---ceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~~s 143 (327)
.....|.++.|+++..|..+. ..+.+++ .++|+++|+||+||.+.. ....|.. .++..|+ +++.+|
T Consensus 68 ~~~~~~lil~VvD~~d~~~s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 68 IGESKALVVNIVDIFDFNGSFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp HHHHCCEEEEEEETTCSGGGCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred hhccCcEEEEEEECCCCCCchhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 346778999999998764322 1355554 378999999999998652 3445543 3566777 678899
Q ss_pred CcchhhHHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 144 ~~~~~~l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
+.+..+++.+...+ ++..++++|.+|+|||||+|+|.+.. ... ......+..++
T Consensus 143 A~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~~------------~~~--------~~~~~~~~~~g-- 200 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEA------------TGK--------GNVITTSYFPG-- 200 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHH------------HHT--------TCCCEEEECTT--
T ss_pred CCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhhc------------cCC--------ccceeecCCCC--
Confidence 98888888776665 68899999999999999999999831 000 01111222223
Q ss_pred ceeeEEEEEEEccCCCeEEeCcccCCcc
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS 247 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~~~~~ 247 (327)
+|+....++...+..++||||+....
T Consensus 201 --tT~~~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 201 --TTLDMIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp --SSCEEEEEECSTTCEEEECCSCCCCS
T ss_pred --eEEeeEEEEeCCCeEEEeCCCcCcHH
Confidence 77777778877788999999998654
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.56 E-value=1.8e-16 Score=162.54 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=81.0
Q ss_pred HHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEE
Q 020346 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (327)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~ 228 (327)
++.+++.+ +|++++|+||||||||||+++|+| +++|++|+|.+. ..++|
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~G------------l~~p~~G~I~~~------------------~~i~~ 421 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG------------VEEPTEGKVEWD------------------LTVAY 421 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHT------------SSCCSBSCCCCC------------------CCEEE
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCceEEEEe------------------eEEEE
Confidence 33333444 899999999999999999999999 899999998751 14789
Q ss_pred EEccCCC----eEEeCcccC-CccccccCHhHHhhhhHH---------HHHhcCccccccccccccccccCCceEEcccH
Q 020346 229 LPLSGGG----YLADTPGFN-QPSLLKVTKQSLAQTFPE---------IKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW 294 (327)
Q Consensus 229 v~q~~~~----~i~Dtpg~~-~~~l~~~~~~~l~~~~~~---------~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~ 294 (327)
+||+... ++.+..... ..... ........... ....|||||+||+.+++++ +.+|.++|+|+|
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL-~~~p~lLlLDEP 498 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLN--SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL-LRDADIYLLDEP 498 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHH--CHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHH-TSCCSEEEEECT
T ss_pred EecCccCCCCCcHHHHHHhhhccCCC--HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH-HhCCCEEEEeCC
Confidence 9997422 111110000 00000 00000111111 1234999999999999999 999999999965
Q ss_pred ------HHHHHHHHHHHHHH
Q 020346 295 ------ERYQYYFQLLDEIR 308 (327)
Q Consensus 295 ------~r~~~~~~ll~e~~ 308 (327)
.......++++++.
T Consensus 499 t~~LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHH
Confidence 34455556666664
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.55 E-value=1.3e-16 Score=163.64 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=95.7
Q ss_pred ceeeccCcch-hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce---------eecc
Q 020346 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (327)
Q Consensus 138 ~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i---------~~~g 206 (327)
+.+.++|+.. .++++++ .+ +|++++|+||||||||||+|+|+| +++|++|++ .++|
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~G------------ll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAG------------QLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTT------------SSCCCTTTTCCCHHHHHHHTTT
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhC------------CCCCCCCccccccchhhheeCC
Confidence 5677888765 3788888 76 999999999999999999999999 899999996 4566
Q ss_pred eeeccccccCCCcceeeEEEEEEEccCCC-------eEEeCcccCC------ccccccCHhHHhhhhHHHHHhcCccccc
Q 020346 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGG-------YLADTPGFNQ------PSLLKVTKQSLAQTFPEIKEMLKANEPA 273 (327)
Q Consensus 207 ~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-------~i~Dtpg~~~------~~l~~~~~~~l~~~~~~~~~~LSgGq~q 273 (327)
.++........ .....+++++|.... .+.+...... ..++.+.+....+..+ ..|||||+|
T Consensus 162 ~~~~~~~~~~~---~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~---~~LSGGekQ 235 (607)
T 3bk7_A 162 NELQNYFERLK---NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL---HQLSGGELQ 235 (607)
T ss_dssp STHHHHHHHHH---HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBG---GGCCHHHHH
T ss_pred Eehhhhhhhhh---hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCCh---hhCCHHHHH
Confidence 55433210000 011234556653110 0000000000 0011111112222222 349999999
Q ss_pred cccccccccccCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 274 KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 274 ~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
|+++++++ +.+|+++|+|+| .....+.++++++..
T Consensus 236 RvaIAraL-~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~ 276 (607)
T 3bk7_A 236 RVAIAAAL-LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276 (607)
T ss_dssp HHHHHHHH-HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 99999999 999999999965 455566677777654
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.55 E-value=3e-16 Score=158.73 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=80.8
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEE
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~ 230 (327)
.+++.+ +|++++|+|+||||||||+++|+| +++|++|+|.+. ..++|+|
T Consensus 304 ~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~G------------l~~p~~G~i~~~------------------~~i~~v~ 353 (538)
T 1yqt_A 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG------------VEEPTEGKIEWD------------------LTVAYKP 353 (538)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHHT------------SSCCSBCCCCCC------------------CCEEEEC
T ss_pred eCccccCCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEEC------------------ceEEEEe
Confidence 333334 899999999999999999999999 899999998751 1378899
Q ss_pred ccCCC----eEEeCcccC------C-----ccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH-
Q 020346 231 LSGGG----YLADTPGFN------Q-----PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW- 294 (327)
Q Consensus 231 q~~~~----~i~Dtpg~~------~-----~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~- 294 (327)
|+... ++.+..... . ..++.+......... ...|||||+||+.+++++ +.+|.++|+|+|
T Consensus 354 Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~LSGGe~qrv~lAraL-~~~p~lLlLDEPt 429 (538)
T 1yqt_A 354 QYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE---VNELSGGELQRVAIAATL-LRDADIYLLDEPS 429 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSB---GGGCCHHHHHHHHHHHHH-TSCCSEEEEECTT
T ss_pred cCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCC---hhhCCHHHHHHHHHHHHH-HhCCCEEEEeCCc
Confidence 87422 111110000 0 001111111111111 234999999999999999 999999999966
Q ss_pred -----HHHHHHHHHHHHHH
Q 020346 295 -----ERYQYYFQLLDEIR 308 (327)
Q Consensus 295 -----~r~~~~~~ll~e~~ 308 (327)
...+...++++++.
T Consensus 430 ~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 34455556666654
No 60
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.54 E-value=4.5e-15 Score=137.66 Aligned_cols=101 Identities=22% Similarity=0.293 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC----Ce
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG----GY 236 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~----~~ 236 (327)
+++|+||||||||||+|+|+| +..|++|+|.++|.++.... ..+.+++++|..+ .+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g------------~~~~~~G~i~~~g~~i~~~~--------~~~~i~~v~q~~~~~~~lt 63 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK------------SQVSRKASSWNREEKIPKTV--------EIKAIGHVIEEGGVKMKLT 63 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH------------HHC------------CCCCC--------SCCEEEESCC----CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhC------------CCCCCCCccccCCcccCcce--------eeeeeEEEeecCCCcCCce
Confidence 689999999999999999999 89999999999998763211 3467889998753 47
Q ss_pred EEeCcccCCccccccCHhHH-----hhhhHHHHHhcCccccccccccccc
Q 020346 237 LADTPGFNQPSLLKVTKQSL-----AQTFPEIKEMLKANEPAKCSFNNCL 281 (327)
Q Consensus 237 i~Dtpg~~~~~l~~~~~~~l-----~~~~~~~~~~LSgGq~q~~~~~~~~ 281 (327)
+.|++++............+ ..........|||||+||+.++++.
T Consensus 64 v~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal 113 (270)
T 3sop_A 64 VIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVH 113 (270)
T ss_dssp EECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCC
T ss_pred EEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheee
Confidence 89999987543211111111 1112223445999999999999754
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.54 E-value=3.4e-16 Score=139.94 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=80.1
Q ss_pred eccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcc
Q 020346 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~ 220 (327)
..+|+...+++++ -+|++++|+||||||||||+++|+| + +|++|+|.. .++.. +...
T Consensus 7 pk~~g~~~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~G------------l-~p~~G~I~~--~~~~~-~~~~---- 63 (208)
T 3b85_A 7 PKTLGQKHYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAV------------Q-ALQSKQVSR--IILTR-PAVE---- 63 (208)
T ss_dssp CCSHHHHHHHHHH---HHCSEEEEECCTTSSTTHHHHHHHH------------H-HHHTTSCSE--EEEEE-CSCC----
T ss_pred cCCHhHHHHHHhc---cCCCEEEEECCCCCCHHHHHHHHhc------------C-CCcCCeeee--EEecC-Cchh----
Confidence 3456677788886 3699999999999999999999999 9 999999953 22221 1111
Q ss_pred eeeEEEEEEEccCCCeEEeCc-ccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHHHH
Q 020346 221 HTTRHVSLLPLSGGGYLADTP-GFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297 (327)
Q Consensus 221 ~tt~~i~~v~q~~~~~i~Dtp-g~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~r~ 297 (327)
.++.++|+||++ .++. .+..+....+..........++.+. ..||+||+++++++ +.+|.++|+|+|..-
T Consensus 64 -~~~~ig~v~q~~----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL-~~~p~lllLDEPts~ 134 (208)
T 3b85_A 64 -AGEKLGFLPGTL----NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGR-TLNDAFVILDEAQNT 134 (208)
T ss_dssp -TTCCCCSSCC----------CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTC-CBCSEEEEECSGGGC
T ss_pred -hhcceEEecCCH----HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHH-hcCCCEEEEeCCccc
Confidence 345688888864 2222 1111000000000000112222222 44999999999999 999999999998743
No 62
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.53 E-value=1.6e-14 Score=139.58 Aligned_cols=158 Identities=23% Similarity=0.244 Sum_probs=104.2
Q ss_pred ccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHH----HHHHHHh-hhhhcCC---ceeecc
Q 020346 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCS 143 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~~s 143 (327)
...+.|.+++|+++..|..+. ..+.+++ .++|+++|+||+||.+.. ....|.. .++..|+ +++.+|
T Consensus 66 i~~~~~~il~VvD~~d~~~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 140 (368)
T 3h2y_A 66 IGKSDALVVKIVDIFDFNGSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLIS 140 (368)
T ss_dssp HHHSCCEEEEEEETTSHHHHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred HhccCcEEEEEEECCCCcccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEe
Confidence 345778999999997653111 1234432 478999999999997653 3444543 3455677 678899
Q ss_pred CcchhhHHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCc
Q 020346 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (327)
Q Consensus 144 ~~~~~~l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g 219 (327)
+.+..+++.+...+ ++..++++|.+|+|||||+|.|.+... |.+ ......+. .
T Consensus 141 A~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~~---------------~~~----~~~~~~~~----~ 197 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFS---------------DET----ENVITTSH----F 197 (368)
T ss_dssp TTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHHT---------------TSC----SSCCEEEC----C
T ss_pred CCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhhc---------------ccc----ccceecCC----C
Confidence 99888888877665 688999999999999999999998310 000 00111222 2
Q ss_pred ceeeEEEEEEEccCCCeEEeCcccCCcc--ccccCHhHHhh
Q 020346 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQ 258 (327)
Q Consensus 220 ~~tt~~i~~v~q~~~~~i~Dtpg~~~~~--l~~~~~~~l~~ 258 (327)
+++|+....++...+..++||||+..+. .+.+..+.+..
T Consensus 198 ~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 198 PGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp C----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred CCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 3488888888877778999999997654 23344444443
No 63
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.50 E-value=1.2e-15 Score=162.86 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=50.5
Q ss_pred ceeeccCcc--hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc
Q 020346 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (327)
Q Consensus 138 ~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (327)
+.+.++|++ ..+++++++.+ +|++++|+||||||||||+|+|+| +++|++|+|++++
T Consensus 675 ~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaG------------ll~P~sG~I~~~~ 734 (986)
T 2iw3_A 675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG------------ELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTT------------SSCCSEEEEEECT
T ss_pred EeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCceEEEEcC
Confidence 345677754 46899999998 999999999999999999999999 8999999999975
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.46 E-value=5.7e-15 Score=149.41 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce-----------eecceeeccccccC-CCcceeeEE
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK-----------WFEDQRVGEVSTKS-GRGKHTTRH 225 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i-----------~~~g~~v~~~s~~~-~~g~~tt~~ 225 (327)
+|++++|+||||||||||+|+|+| +++|++|+| .++|.++....... .........
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G------------l~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 91 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG------------EIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK 91 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT------------SSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence 799999999999999999999999 899999998 56666654321100 000001222
Q ss_pred EEEEEccCCCe---EEeCcc---cC---CccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccH--
Q 020346 226 VSLLPLSGGGY---LADTPG---FN---QPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDW-- 294 (327)
Q Consensus 226 i~~v~q~~~~~---i~Dtpg---~~---~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~-- 294 (327)
++++.+.+... +.+... .. ...++.+....+.+.. ...|||||+||+++++++ +.+|+++|+|+|
T Consensus 92 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~---~~~LSgGe~Qrv~iA~aL-~~~p~illlDEPts 167 (538)
T 3ozx_A 92 IQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKD---ANILSGGGLQRLLVAASL-LREADVYIFDQPSS 167 (538)
T ss_dssp CSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSB---GGGCCHHHHHHHHHHHHH-HSCCSEEEEESTTT
T ss_pred cchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCC---hhhCCHHHHHHHHHHHHH-HcCCCEEEEECCcc
Confidence 22222211100 000000 00 0001111111111222 234999999999999999 999999999965
Q ss_pred ----HHHHHHHHHHHHHH
Q 020346 295 ----ERYQYYFQLLDEIR 308 (327)
Q Consensus 295 ----~r~~~~~~ll~e~~ 308 (327)
.....+.++++++.
T Consensus 168 ~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELL 185 (538)
T ss_dssp TCCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 34445556666653
No 65
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.42 E-value=1.6e-14 Score=141.67 Aligned_cols=132 Identities=16% Similarity=0.120 Sum_probs=89.1
Q ss_pred chhhHHHHHhhc-CCC--------------------EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee
Q 020346 146 SKLGLDSLLQRL-RDQ--------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~--------------------~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (327)
+..+++++++.+ +|+ +++|+|+||||||||+|+|+| +.+|++|+|.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G------------l~~p~~GsI~~ 102 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG------------IGNEEEGAAKT 102 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT------------CCTTSTTSCCC
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC------------CCCccCceEEE
Confidence 356899999988 888 999999999999999999999 89999999999
Q ss_pred cceeeccccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCccccccCHhHHhhhh--HH--HHHhcCcc--ccccc
Q 020346 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSLLKVTKQSLAQTF--PE--IKEMLKAN--EPAKC 275 (327)
Q Consensus 205 ~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~~l~~~~~~~l~~~~--~~--~~~~LSgG--q~q~~ 275 (327)
+|.++.. .++++|.+ ..++.|+|++.... ....++...+ .+ ....||+| |+|++
T Consensus 103 ~g~~~t~--------------~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv 165 (413)
T 1tq4_A 103 GVVEVTM--------------ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYEYDFFIIISATRFKKNDI 165 (413)
T ss_dssp CC----C--------------CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGGCSEEEEEESSCCCHHHH
T ss_pred CCeecce--------------eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCccCCeEEeCCCCccHHHH
Confidence 8876421 03456553 46888999986421 1111111111 00 00128999 99999
Q ss_pred ccccccccc----------CCceEEcccHH------HHHHHHHHHHHH
Q 020346 276 SFNNCLHLG----------EPGCVVKGDWE------RYQYYFQLLDEI 307 (327)
Q Consensus 276 ~~~~~~h~~----------ep~~~v~~~~~------r~~~~~~ll~e~ 307 (327)
.+++++ .+ .|+++++|+|. ..+...++++++
T Consensus 166 ~la~aL-~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 166 DIAKAI-SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp HHHHHH-HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 999887 55 77777777552 233344555555
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.9e-15 Score=154.84 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=40.2
Q ss_pred eeeccCcchh-hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce
Q 020346 139 PLFCSVESKL-GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202 (327)
Q Consensus 139 ~~~~s~~~~~-~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i 202 (327)
.+.++|+... .++.+...-+|++++|+||||||||||+|+|+| +++|++|+|
T Consensus 82 ~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~G------------ll~P~~G~i 134 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG------------KQKPNLGRF 134 (608)
T ss_dssp TEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT------------SSCCCTTTT
T ss_pred CeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhc------------CCCCCCceE
Confidence 3556665432 333333222899999999999999999999999 999999998
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.3e-14 Score=144.83 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=81.0
Q ss_pred hhHHHHHhhc-C-----CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 148 LGLDSLLQRL-R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 148 ~~l~~l~~~l-~-----g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
..++++++.+ + |++++|+||||||||||+++|+| +.+|++|+..
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~G------------l~~p~~G~~~------------------ 410 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG------------ALKPDEGQDI------------------ 410 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHT------------SSCCSBCCCC------------------
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhc------------CCCCCCCcCc------------------
Confidence 3567778776 4 48899999999999999999999 8999999621
Q ss_pred eeEEEEEEEccCCCe----EEeCcc--cCCcc---------ccccCHhHHhhhhHHHHHhcCccccccccccccccccCC
Q 020346 222 TTRHVSLLPLSGGGY----LADTPG--FNQPS---------LLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEP 286 (327)
Q Consensus 222 tt~~i~~v~q~~~~~----i~Dtpg--~~~~~---------l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep 286 (327)
....++++||..... +.+... +.... ++.+...++.+.. ...|||||+||+++|+++ +.+|
T Consensus 411 ~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~---~~~LSGGqkQRv~iAraL-~~~p 486 (608)
T 3j16_B 411 PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQE---VQHLSGGELQRVAIVLAL-GIPA 486 (608)
T ss_dssp CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSB---SSSCCHHHHHHHHHHHHT-TSCC
T ss_pred cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCC---hhhCCHHHHHHHHHHHHH-HhCC
Confidence 112477888863211 111100 00000 0000000111111 123999999999999999 9999
Q ss_pred ceEEcccHH------HHHHHHHHHHHHH
Q 020346 287 GCVVKGDWE------RYQYYFQLLDEIR 308 (327)
Q Consensus 287 ~~~v~~~~~------r~~~~~~ll~e~~ 308 (327)
.++|+|+|. ......++++++.
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~ 514 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFI 514 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 999999663 4445556666654
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.39 E-value=7.8e-15 Score=151.82 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=35.5
Q ss_pred hcCccccccccccccccccCCc--eEEcccH------HHHHHHHHHHHHHHHh
Q 020346 266 MLKANEPAKCSFNNCLHLGEPG--CVVKGDW------ERYQYYFQLLDEIRIR 310 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~ep~--~~v~~~~------~r~~~~~~ll~e~~~~ 310 (327)
.|||||+||+++++++ +.+|+ ++|+|+| .......+++++++..
T Consensus 202 ~LSGGe~QRv~iArAL-~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~ 253 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQI-GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL 253 (670)
T ss_dssp GSCHHHHHHHHHHHHH-HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH-hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc
Confidence 4999999999999999 88888 9999965 4556666777777543
No 69
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.37 E-value=3.3e-13 Score=128.51 Aligned_cols=110 Identities=14% Similarity=0.241 Sum_probs=81.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
++.+.+ | ..+++++++.+ +|+.++|+|+||||||||+|+|+| +++|++|.|.++|.+.-..+
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g------------~~~~~~g~i~i~~~~e~~~~-- 213 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIME------------FIPKEERIISIEDTEEIVFK-- 213 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGG------------GSCTTSCEEEEESSCCCCCS--
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCCcEEEECCeeccccc--
Confidence 344444 5 56899999998 899999999999999999999999 99999999999986521111
Q ss_pred CCCcceeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHH
Q 020346 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 216 ~~~g~~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
. ....+++++ .|||+|+..+++++ ..+|+++++|++.
T Consensus 214 ~-----~~~~i~~~~-------------------------------------ggg~~~r~~la~aL-~~~p~ilildE~~ 250 (330)
T 2pt7_A 214 H-----HKNYTQLFF-------------------------------------GGNITSADCLKSCL-RMRPDRIILGELR 250 (330)
T ss_dssp S-----CSSEEEEEC-------------------------------------BTTBCHHHHHHHHT-TSCCSEEEECCCC
T ss_pred c-----chhEEEEEe-------------------------------------CCChhHHHHHHHHh-hhCCCEEEEcCCC
Confidence 0 122333332 08999999999999 8899999999775
Q ss_pred HHHHHHHHHHHH
Q 020346 296 RYQYYFQLLDEI 307 (327)
Q Consensus 296 r~~~~~~ll~e~ 307 (327)
..+ ..++++.+
T Consensus 251 ~~e-~~~~l~~~ 261 (330)
T 2pt7_A 251 SSE-AYDFYNVL 261 (330)
T ss_dssp STH-HHHHHHHH
T ss_pred hHH-HHHHHHHH
Confidence 422 23344444
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.36 E-value=1.7e-14 Score=129.24 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=67.7
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeE
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~ 224 (327)
+...|+++++.+ +|++++|+||||||||||+++|+| ++ | |+|.+ |.++.......+ ...
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g------------~~-p--G~i~~-g~~~~~~~~~~~----~~~ 68 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLN------------EF-P--NYFYF-SVSCTTRKKREK----EKE 68 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHH------------HS-T--TTEEE-CCCEECSCCCSS----CCB
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHh------------hC-C--CcEEE-eecccCCCCCcc----ccc
Confidence 345789999998 899999999999999999999999 77 6 99999 776654332211 234
Q ss_pred EEEEEEccCCC--------eEEeCcccCCccccccCHhHHhhhhHH----H-HHhcCccccccccc-----cccccccCC
Q 020346 225 HVSLLPLSGGG--------YLADTPGFNQPSLLKVTKQSLAQTFPE----I-KEMLKANEPAKCSF-----NNCLHLGEP 286 (327)
Q Consensus 225 ~i~~v~q~~~~--------~i~Dtpg~~~~~l~~~~~~~l~~~~~~----~-~~~LSgGq~q~~~~-----~~~~h~~ep 286 (327)
.++|++|++.. ..++...+..... ......+...... + ...|||||+||.++ +.++ +..|
T Consensus 69 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~l-l~~~ 146 (218)
T 1z6g_A 69 GVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY-GTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIF-IKPP 146 (218)
T ss_dssp TTTBEECCHHHHHHHHHTTCEEEEEEETTEEE-EEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEE-EECS
T ss_pred CCeEEECCHHHHHHhhhccchhhhhhcccccC-CCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEE-EeCc
Confidence 56677775311 1122111111100 0111111111000 0 01259999999999 4455 7778
Q ss_pred ceEEcccH
Q 020346 287 GCVVKGDW 294 (327)
Q Consensus 287 ~~~v~~~~ 294 (327)
.+.++|++
T Consensus 147 ~~~~Lde~ 154 (218)
T 1z6g_A 147 STDVLLSR 154 (218)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77777644
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.32 E-value=9.8e-14 Score=137.85 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=75.4
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-c-eeecceeeccccccCCCcceeeEEEEE
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-S-KWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~-i~~~g~~v~~~s~~~~~g~~tt~~i~~ 228 (327)
++++.+ +|++++|+||||||||||+++|+| ++.|++| + |+++|.. ++.+++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G------------l~~p~~G~~pI~vdg~~--------------~~~i~~ 183 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCS------------YALKFNAYQPLYINLDP--------------QQPIFT 183 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHH------------TTHHHHCCCCEEEECCT--------------TSCSSS
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhC------------cccccCCceeEEEcCCc--------------cCCeee
Confidence 688887 899999999999999999999999 9999999 9 9998821 112233
Q ss_pred EEccCC-------CeEEeCcccCC-------------ccccccCHhHHhhhhHHHHHhcCcccccccccccc--ccccCC
Q 020346 229 LPLSGG-------GYLADTPGFNQ-------------PSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNC--LHLGEP 286 (327)
Q Consensus 229 v~q~~~-------~~i~Dtpg~~~-------------~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~--~h~~ep 286 (327)
+||... ..+.++. +.. ..+..+......+ ...|||||+||++++++ + +.+|
T Consensus 184 vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-----~~~LSgGq~qrlalAra~rL-~~~p 256 (460)
T 2npi_A 184 VPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-----NKDLYLECISQLGQVVGQRL-HLDP 256 (460)
T ss_dssp CSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-----CHHHHHHHHHHHHHHHHHHH-HHCH
T ss_pred eccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-----hhhhhHHHHHHHHHHHHHHh-ccCc
Confidence 333321 1111221 110 0112222222222 23499999999999998 8 8999
Q ss_pred ce----EEccc-HH
Q 020346 287 GC----VVKGD-WE 295 (327)
Q Consensus 287 ~~----~v~~~-~~ 295 (327)
.+ +|+|+ |.
T Consensus 257 ~i~~sGLlLDEpPt 270 (460)
T 2npi_A 257 QVRRSGCIVDTPSI 270 (460)
T ss_dssp HHHHSCEEEECCCG
T ss_pred ccCcceEEEeCCcc
Confidence 99 99987 53
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.31 E-value=4.9e-13 Score=126.14 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=47.4
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
+.++.+.++|. ..+++++++.+ +|++++|+||||||||||+++|+| ++ +|+|...
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g------------l~---~G~I~~~ 157 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH------------FL---GGSVLSF 157 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH------------HH---TCEEECG
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhh------------hc---CceEEEE
Confidence 34566777776 67999999998 899999999999999999999999 77 7888654
No 73
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.28 E-value=1.1e-12 Score=124.07 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC--
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~-- 235 (327)
+|++++|+|+||||||||+++|.| +++|+.|. ..+++++|++..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g------------ll~~~~G~----------------------~~v~~v~qd~~~~~ 134 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA------------LLARWDHH----------------------PRVDLVTTDGFLYP 134 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH------------HHHTSTTC----------------------CCEEEEEGGGGBCC
T ss_pred CCEEEEEECCCCchHHHHHHHHHh------------hccccCCC----------------------CeEEEEecCccCCc
Confidence 789999999999999999999999 77776542 236788886421
Q ss_pred -eEEeCcccCC-ccc-cccCHhHHhhhhHHHH--------HhcCccccccccccccccccCCceEEcc
Q 020346 236 -YLADTPGFNQ-PSL-LKVTKQSLAQTFPEIK--------EMLKANEPAKCSFNNCLHLGEPGCVVKG 292 (327)
Q Consensus 236 -~i~Dtpg~~~-~~l-~~~~~~~l~~~~~~~~--------~~LSgGq~q~~~~~~~~h~~ep~~~v~~ 292 (327)
++.++.++.. ... .......+......+. ..||+||+||+.++.++ +.+|+++|.|
T Consensus 135 ~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al-~~~p~ilIlD 201 (312)
T 3aez_A 135 NAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQV-VRHPDILILE 201 (312)
T ss_dssp HHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEE-ECSCSEEEEE
T ss_pred ccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHh-ccCCCEEEEC
Confidence 1122222211 000 1111122222222221 23899999999999888 8899999966
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.27 E-value=1.7e-13 Score=146.36 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=75.4
Q ss_pred eeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.+.++|++..+++++++.+ +|++++|+|+||||||||+|+|+| |+| +|.+.. ..
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------------------G~i--~g~~~~----~~- 494 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------------------GQV--DGFPTQ----EE- 494 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------------------TCS--TTCCCT----TT-
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------------CCc--CCCccc----cc-
Confidence 4677788788999999998 999999999999999999999996 111 122110 00
Q ss_pred CcceeeEEEEEEEccC-----CCeEEeCcccCCcc--------ccccCH-hHHhhhhHHHHHhcCccccccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSG-----GGYLADTPGFNQPS--------LLKVTK-QSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~-----~~~i~Dtpg~~~~~--------l~~~~~-~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
. .+++++|+. ..++.+...+.... ++.+.+ ....+.. ...|||||+||+.+++++ +
T Consensus 495 ----~--~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~---~~~LSGGqkQRvaLArAL-~ 564 (986)
T 2iw3_A 495 ----C--RTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP---ISALSGGWKMKLALARAV-L 564 (986)
T ss_dssp ----S--CEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSB---GGGCCHHHHHHHHHHHHH-H
T ss_pred ----e--eEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCC---cccCCHHHHHHHHHHHHH-h
Confidence 1 134555532 11222222110000 011111 0111111 234999999999999999 9
Q ss_pred cCCceEEcccH
Q 020346 284 GEPGCVVKGDW 294 (327)
Q Consensus 284 ~ep~~~v~~~~ 294 (327)
.+|+++|+|+|
T Consensus 565 ~~P~lLLLDEP 575 (986)
T 2iw3_A 565 RNADILLLDEP 575 (986)
T ss_dssp TTCSEEEEEST
T ss_pred cCCCEEEEECC
Confidence 99999999965
No 75
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.26 E-value=2.8e-12 Score=120.50 Aligned_cols=115 Identities=20% Similarity=0.112 Sum_probs=48.9
Q ss_pred eeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc-ccccccceeecceeeccccccCC
Q 020346 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW-FEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~-~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.++.+|++..+++++++.+ +|+|+||||||||+|+|.| . ..|++| |.++|.++....
T Consensus 3 ~l~~~~~~~~~l~~~~~~I-----~lvG~nG~GKSTLl~~L~g------------~~~~~~~g-i~~~g~~~~~t~---- 60 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEFTL-----MVVGESGLGKSTLINSLFL------------TDLYPERV-ISGAAEKIERTV---- 60 (301)
T ss_dssp ---------------CEEE-----EEEEETTSSHHHHHHHHHC-------------------------------------
T ss_pred CCcceECCEEEEcCCCEEE-----EEECCCCCCHHHHHHHHhC------------CCccCCCC-cccCCcccCCcc----
Confidence 3556677778888887765 9999999999999999999 4 678888 887776653210
Q ss_pred CcceeeEEEEEEEccC----CCeEEeCcccCCccc--ccc-C-HhHHhhhhHHHHHhcCccccccccccc
Q 020346 218 RGKHTTRHVSLLPLSG----GGYLADTPGFNQPSL--LKV-T-KQSLAQTFPEIKEMLKANEPAKCSFNN 279 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~----~~~i~Dtpg~~~~~l--~~~-~-~~~l~~~~~~~~~~LSgGq~q~~~~~~ 279 (327)
....++++++.. ...++||+|+....- +.. . ...+...+......+||||+|++.+++
T Consensus 61 ----~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ar 126 (301)
T 2qnr_A 61 ----QIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNR 126 (301)
T ss_dssp --------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCC
T ss_pred ----eEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhh
Confidence 123356666653 347899999853211 000 0 111233333445569999999998887
No 76
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.24 E-value=4.6e-11 Score=117.58 Aligned_cols=108 Identities=29% Similarity=0.413 Sum_probs=75.6
Q ss_pred cccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (327)
..+.++|.+++|+++..+.... ..+.++| +..++|+++|.||+|+.+... ......+..+++ +.+.+|+.++.+
T Consensus 77 ~~~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 77 NMIREADLVLFVVDGKRGITKEDESLADFL---RKSTVDTILVANKAENLREFE-REVKPELYSLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp HHHTTCSEEEEEEETTTCCCHHHHHHHHHH---HHHTCCEEEEEESCCSHHHHH-HHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEeCCCCccccH-HHHHHHHHhcCCCCEEEEeccCCCC
Confidence 4578999999999987643221 2344444 345899999999999864311 111123445777 788899988877
Q ss_pred HHHHHhhc-------C-C----------CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 150 LDSLLQRL-------R-D----------QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 150 l~~l~~~l-------~-g----------~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
++++...+ . . -.++|+|+||||||||+|.|+|..
T Consensus 153 v~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 153 LDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred HHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 76654432 1 1 279999999999999999999943
No 77
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.20 E-value=2.1e-12 Score=129.91 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=93.6
Q ss_pred chhhHHHHHh-hc-CCCEEEEEcCCCCCHHHHHHH--HcCCCCCCCcccccccccccccceeecceeeccccccCCCcce
Q 020346 146 SKLGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINA--LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (327)
Q Consensus 146 ~~~~l~~l~~-~l-~g~~v~lvG~sG~GKSTLln~--L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~ 221 (327)
...+|+++++ .+ +|++++|+|+||||||||+++ +.| +.+|++|.|+++|.+.......
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~G------------l~~~~~g~i~v~g~~~~~~~~~------ 85 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG------------IIEFDEPGVFVTFEETPQDIIK------ 85 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHH------------HHHHCCCEEEEESSSCHHHHHH------
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHH------------HHhCCCCEEEEEEeCCHHHHHH------
Confidence 4678999999 87 999999999999999999999 678 8899999999999874221100
Q ss_pred eeEEEEEEEccCC----CeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCceEEcccHHHH
Q 020346 222 TTRHVSLLPLSGG----GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVKGDWERY 297 (327)
Q Consensus 222 tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~~~~~r~ 297 (327)
..+.+++++|+.. ....+... .....+.++..++......+...||+||+|++.++..+ ...|. ...|+...
T Consensus 86 ~~~~~g~~~q~~~~~~~l~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t-~~~~~--~~lD~~~~ 161 (525)
T 1tf7_A 86 NARSFGWDLAKLVDEGKLFILDASP-DPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVT-SVFQQ--YDASSVVR 161 (525)
T ss_dssp HHGGGTCCHHHHHHTTSEEEEECCC-CSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECST-TTSTT--TCCHHHHH
T ss_pred HHHHcCCChHHhhccCcEEEEecCc-ccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHH-HHHHh--cCCHHHHH
Confidence 1233566666531 12222111 00111112233444444555566999999999988766 44554 22356655
Q ss_pred HHHHHHHHHHHHhH
Q 020346 298 QYYFQLLDEIRIRE 311 (327)
Q Consensus 298 ~~~~~ll~e~~~~~ 311 (327)
..+.+++++++..+
T Consensus 162 ~~l~~ll~~l~~~g 175 (525)
T 1tf7_A 162 RELFRLVARLKQIG 175 (525)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC
Confidence 66777888876543
No 78
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.20 E-value=2.7e-13 Score=131.57 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=34.1
Q ss_pred cCccccccccccccccccCC--ceEEcccH------HHHHHHHHHHHHHH
Q 020346 267 LKANEPAKCSFNNCLHLGEP--GCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep--~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
|||||+||+.++.++ +.+| .++|+||| ...+.+.++++++.
T Consensus 296 lSgGe~qrl~lA~~l-~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVST-VLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHH-HHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHH-HhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999987 8899 99999965 46677777777764
No 79
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.15 E-value=2.1e-12 Score=112.38 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=61.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt 240 (327)
.++|+||||||||||+++|+| ++. |.++|.......... ..+.+++++|.... .++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g------------~l~-----i~~~g~~~~~~~~~~-----~~~~ig~~~~~~~~--~~~ 57 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE------------RLG-----KRAIGFWTEEVRDPE-----TKKRTGFRIITTEG--KKK 57 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH------------HHG-----GGEEEEEEEEEC-----------CCEEEEEETTC--CEE
T ss_pred EEEEECCCCCCHHHHHHHHHH------------HhC-----CcCCCEEhhhhcccc-----ccceeEEEeecCcH--HHH
Confidence 689999999999999999999 553 566666553332101 34557888886411 011
Q ss_pred cccCCccccccCH--hHHhhhhHHHHHhcCcccccccccccc-----ccccCCceEEccc
Q 020346 241 PGFNQPSLLKVTK--QSLAQTFPEIKEMLKANEPAKCSFNNC-----LHLGEPGCVVKGD 293 (327)
Q Consensus 241 pg~~~~~l~~~~~--~~l~~~~~~~~~~LSgGq~q~~~~~~~-----~h~~ep~~~v~~~ 293 (327)
. +..+.. .......+ ..|||||+||+.++++ + ..+|+++++|+
T Consensus 58 ~------~~~~~~~~~~~~~~~~---~~lSgG~~qr~~la~aa~~~~l-~~~p~llilDE 107 (178)
T 1ye8_A 58 I------FSSKFFTSKKLVGSYG---VNVQYFEELAIPILERAYREAK-KDRRKVIIIDE 107 (178)
T ss_dssp E------EEETTCCCSSEETTEE---ECHHHHHHHHHHHHHHHHHHHH-HCTTCEEEECC
T ss_pred H------HHhhcCCccccccccc---cCcCHHHHHHHHHHhhcccccc-ccCCCEEEEeC
Confidence 0 000000 00011111 2399999999999985 6 88999999998
No 80
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.15 E-value=6.4e-11 Score=116.44 Aligned_cols=106 Identities=24% Similarity=0.337 Sum_probs=73.6
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHH-HHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLV-EAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~-~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (327)
...+.++|.+++|+++..+. +.. +..+. ..+..++|+++|.||+|+.+... ....+.++++ +.+.+|+.++.
T Consensus 77 ~~~~~~ad~il~vvD~~~~~-~~~--d~~~~~~l~~~~~pvilv~NK~D~~~~~~---~~~~~~~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 77 EIAMDEADVIIFMVNGREGV-TAA--DEEVAKILYRTKKPVVLAVNKLDNTEMRA---NIYDFYSLGFGEPYPISGTHGL 150 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCS-CHH--HHHHHHHHTTCCSCEEEEEECCCC--------CCCSSGGGSSCCCEECBTTTTB
T ss_pred HHHHHhCCEEEEEEeCCCCC-CHH--HHHHHHHHHHcCCCEEEEEECccCccchh---hHHHHHHcCCCCeEEEeCcCCC
Confidence 34678999999999987653 322 22222 23457899999999999975421 1123445676 78899998888
Q ss_pred hHHHHHhhc----C---------C-CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 149 GLDSLLQRL----R---------D-QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 149 ~l~~l~~~l----~---------g-~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++...+ + + -.++|+|.+|||||||+|.|++.
T Consensus 151 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp THHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 877765442 1 1 37999999999999999999994
No 81
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=119.81 Aligned_cols=130 Identities=22% Similarity=0.157 Sum_probs=69.2
Q ss_pred cCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~ 214 (327)
+++..++++|+...+++++++.+ +|+|+||||||||+|+|+| ...|..|. ++..+...+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~I-----~lvG~sGaGKSTLln~L~g------------~~~~~~~~---~~~~~~~~~- 70 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFTL-----MVVGESGLGKSTLINSLFL------------TDLYSPEY---PGPSHRIKK- 70 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEEE-----EEECCTTSSHHHHHHHHTT------------CCCCCCCC---CSCC------
T ss_pred EEEEecceeECCEEEecCCCEEE-----EEECCCCCcHHHHHHHHhC------------CCCCCCCC---CCcccCCcc-
Confidence 56778888898888888887764 9999999999999999999 33333331 122111111
Q ss_pred cCCCcceeeEEEEEEEccCC----CeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc---
Q 020346 215 KSGRGKHTTRHVSLLPLSGG----GYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--- 287 (327)
Q Consensus 215 ~~~~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~--- 287 (327)
.. ....++++++..+ .+++||+|+....-.......+... +...++.++.+++++++++ +.+|.
T Consensus 71 t~-----~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~---i~~~~~~~l~qr~~IaRal-~~d~~~~v 141 (418)
T 2qag_C 71 TV-----QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY---IDSKFEDYLNAESRVNRRQ-MPDNRVQC 141 (418)
T ss_dssp CC-----EEEEEECC------CEEEEEEECC-----------CHHHHHH---HHHHHHHHTTTSCC-CCCC-CCCC-CCE
T ss_pred ce-----eeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHh-ccCCCeeE
Confidence 00 2244667766543 4789999987542111011122221 2223566678899999887 88888
Q ss_pred eEEcccH
Q 020346 288 CVVKGDW 294 (327)
Q Consensus 288 ~~v~~~~ 294 (327)
|++.++|
T Consensus 142 lL~ldeP 148 (418)
T 2qag_C 142 CLYFIAP 148 (418)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 6666655
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.13 E-value=9e-12 Score=122.99 Aligned_cols=153 Identities=13% Similarity=0.086 Sum_probs=92.1
Q ss_pred cCCceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce---ee
Q 020346 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RV 209 (327)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~---~v 209 (327)
+..+.+.++|. ...+++++ +.+ +|++++|+|+||||||||+++|+| +.+|++|.|.++|+ ++
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag------------~~~~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMAR------------YTRADVIVVGLIGERGREV 198 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHH------------HSCCSEEEEEEESCCHHHH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCeEEEEEeceecHHH
Confidence 34566777786 56799999 887 999999999999999999999999 89999999999998 45
Q ss_pred ccccccCCCcceeeEEEEEEEccCCC-----eEEeCcccCCccccccCHhHHhhhhHHHHHhcCcccccccccccccccc
Q 020346 210 GEVSTKSGRGKHTTRHVSLLPLSGGG-----YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLG 284 (327)
Q Consensus 210 ~~~s~~~~~g~~tt~~i~~v~q~~~~-----~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ 284 (327)
..............+.+++++|.+.. .+.++..+....... ...+....... ...||+|| |+++++ ++
T Consensus 199 ~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-~~~~v~~~ld~-l~~lS~g~-qrvslA----l~ 271 (438)
T 2dpy_A 199 KDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDS-LTRYAMAQ-REIALA----IG 271 (438)
T ss_dssp HHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEEC-HHHHHHHH-HHHHHH----TT
T ss_pred HHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHh-HHHHHHHH-HHHHHH----hC
Confidence 44321100001145678999985211 001110000000000 00000001111 23489999 899988 67
Q ss_pred CCceEEcccHHHHHHHHHHHHHH
Q 020346 285 EPGCVVKGDWERYQYYFQLLDEI 307 (327)
Q Consensus 285 ep~~~v~~~~~r~~~~~~ll~e~ 307 (327)
+|.+.-.=|+.-+....++++++
T Consensus 272 ~p~~t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 272 EPPATKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp CCCCSSSCCTTHHHHHHHHHTTC
T ss_pred CCcccccCCHHHHHHHHHHHHHH
Confidence 88772221455444555555544
No 83
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.10 E-value=1e-11 Score=128.52 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=30.8
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
..+++++++.+ +|++++|+||||||||||+|+|+
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 45789999998 99999999999999999999864
No 84
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.10 E-value=1.6e-11 Score=104.98 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=50.3
Q ss_pred eccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 141 FCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
.++|++..+++++++.+ +|++++|+||||||||||+++|+| ++ |++|+|.++|.++.
T Consensus 14 ~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g------------~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 14 MLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ------------GI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH------------HT-TCCSCCCCCTTTCE
T ss_pred HHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH------------hC-CCCCeEEECCEeee
Confidence 34455567899999998 899999999999999999999999 88 99999999988764
No 85
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.08 E-value=6.7e-13 Score=114.18 Aligned_cols=28 Identities=14% Similarity=-0.094 Sum_probs=25.3
Q ss_pred cCccccccccccccccccCCceEEcccHH
Q 020346 267 LKANEPAKCSFNNCLHLGEPGCVVKGDWE 295 (327)
Q Consensus 267 LSgGq~q~~~~~~~~h~~ep~~~v~~~~~ 295 (327)
.|+||+|++++++++ ..+|.++++|+|.
T Consensus 84 ~s~g~~qrv~iAral-~~~p~~lllDEPt 111 (171)
T 4gp7_A 84 QESARKPLIEMAKDY-HCFPVAVVFNLPE 111 (171)
T ss_dssp SHHHHHHHHHHHHHT-TCEEEEEEECCCH
T ss_pred CHHHHHHHHHHHHHc-CCcEEEEEEeCCH
Confidence 589999999999998 8999999999763
No 86
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.07 E-value=4.3e-12 Score=109.94 Aligned_cols=111 Identities=12% Similarity=0.019 Sum_probs=59.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc---ccceeecceeecccc---ccCCCcceeeEEEEEEEccC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEVS---TKSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~v~~~s---~~~~~g~~tt~~i~~v~q~~ 233 (327)
++++|+|+||||||||+++|++ +++|+ .|.|.++|.++..++ ....+.+.....+.+++|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~------------~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~ 70 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP------------ILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVK 70 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH------------HHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHH------------HhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCc
Confidence 5799999999999999999999 99998 899999998865543 11110000110133566642
Q ss_pred CCeEEeCcccCCccccccCHhHHhhh-hHH----HHHhcCccccccccccccccccCCce
Q 020346 234 GGYLADTPGFNQPSLLKVTKQSLAQT-FPE----IKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 234 ~~~i~Dtpg~~~~~l~~~~~~~l~~~-~~~----~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
-.++.+ + .... .....++... +|. +.+.|||||+||+.+++++ +.+|.+
T Consensus 71 ~~~i~~--~--~~~~-~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARal-l~~p~i 124 (171)
T 2f1r_A 71 LAFIRR--V--SEEE-GNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKP-EEVEHF 124 (171)
T ss_dssp EEEEEE--C--CHHH-HTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSG-GGGGGG
T ss_pred EEEEec--C--Chhh-hhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecc-cCCCcc
Confidence 222222 0 0000 0011222111 111 1123899999999999988 666654
No 87
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=1.5e-11 Score=117.27 Aligned_cols=66 Identities=21% Similarity=0.112 Sum_probs=57.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+..+.+.++|....+++++++.+ +|++++|+|+||||||||+|+|.| ++.|++|+|.+.+.++...
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g------------~~~~~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS------------LLTAAGHKVAVLAVDPSST 96 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH------------HHHHTTCCEEEEEECGGGG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH------------hhhhCCCEEEEEEEcCccc
Confidence 34555666776678899999997 899999999999999999999999 8999999999999887544
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.99 E-value=1.2e-10 Score=102.21 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCe--
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY-- 236 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~-- 236 (327)
|++++|+|+||||||||+++|+| +++ ++| |.++|..+..... ..+.+++++|...+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g------------~~~-~~G-i~~~g~~~~~~~~-------~~~~ig~~~~~~~g~~~ 59 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASE------------VLK-SSG-VPVDGFYTEEVRQ-------GGRRIGFDVVTLSGTRG 59 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHH------------HHH-HTT-CCCEEEECCEEET-------TSSEEEEEEEETTSCEE
T ss_pred CCEEEEECCCCChHHHHHHHHHh------------hcc-cCC-EEEcCEecchhHh-------hhceEEEEEEeccccee
Confidence 67899999999999999999999 888 999 9999988755432 345688888864221
Q ss_pred EEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccc-cccc---cccccCCceEEccc
Q 020346 237 LADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKC-SFNN---CLHLGEPGCVVKGD 293 (327)
Q Consensus 237 i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~-~~~~---~~h~~ep~~~v~~~ 293 (327)
.+....+...... .. ..+.. ....+|+||++++ .+.. +. ..+|+++|.|+
T Consensus 60 ~l~~~~~~~~~~~-~~-~~v~~----~~~~ls~~er~~~~~l~~~a~A~-~~~~dvlilDE 113 (189)
T 2i3b_A 60 PLSRVGLEPPPGK-RE-CRVGQ----YVVDLTSFEQLALPVLRNADCSS-GPGQRVCVIDE 113 (189)
T ss_dssp EEEECCCCCCSSS-CC-EESSS----SEECHHHHHTTTTTTTCCCCCCC-SSCCCCEEECC
T ss_pred hhhcccccCCccc-cc-cccce----EEEcchHHHHHHHHHHhhhhHhh-ccCCCEEEEeC
Confidence 1111111110000 00 00000 0112677777665 3333 34 78999999997
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.99 E-value=2.8e-10 Score=103.03 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=23.3
Q ss_pred ccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|.++..+++++++.+ +|.+++|+||||||||||+++|.+
T Consensus 7 ~~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ----------------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456677899999998 889999999999999999999998
No 90
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.98 E-value=1e-10 Score=114.83 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=49.7
Q ss_pred ceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.+.++|.....++++ +.-+|..++|+||||||||||+++|+| +++|++|+|.+.+.++.
T Consensus 147 ~~Lg~~~~~~~~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg------------~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 147 HSLGMTAHNHDNFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQ------------ELNSSERNILTVEDPIE 206 (418)
T ss_dssp GGSCCCHHHHHHHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHH------------HHCCTTSCEEEEESSCC
T ss_pred HHcCCCHHHHHHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHh------------hcCCCCCEEEEecccch
Confidence 3444555556678888 445889999999999999999999999 88999999999988764
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.98 E-value=1.4e-10 Score=106.90 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=46.2
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-ccceeecceeeccc
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVGEV 212 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~v~~~ 212 (327)
.++++++ .-+|+.++|+||||||||||+++|+| +++|+ +|+|.++|.++..+
T Consensus 15 ~vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g------------~~~~~~~G~I~~~g~~i~~~ 67 (261)
T 2eyu_A 15 DKVLELC-HRKMGLILVTGPTGSGKSTTIASMID------------YINQTKSYHIITIEDPIEYV 67 (261)
T ss_dssp THHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHH------------HHHHHCCCEEEEEESSCCSC
T ss_pred HHHHHHh-hCCCCEEEEECCCCccHHHHHHHHHH------------hCCCCCCCEEEEcCCcceee
Confidence 4788888 34899999999999999999999999 99998 99999999877544
No 92
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.97 E-value=1.2e-09 Score=108.00 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=70.1
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhh
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (327)
...+.++|.+++|.+...+ ++... ...+......++|+++|.||+|+.+... ....+..+++ +.+.+|+.+..+
T Consensus 97 ~~~~~~ad~il~VvD~~~~-~~~~d-~~l~~~l~~~~~pvilV~NK~D~~~~~~---~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREG-VTAAD-EEVAKILYRTKKPVVLAVNKLDNTEMRA---NIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHHHCSEEEEEEESSSC-SCHHH-HHHHHHHTTCCSCEEEEEECC------------CCSGGGSSSSEEECCTTTCTT
T ss_pred HhhHhhCCEEEEEEeCCCC-CChHH-HHHHHHHHHcCCCEEEEEECccchhhhh---hHHHHHHcCCCceEEeecccccc
Confidence 3457899999999998754 33221 1222223457899999999999875431 1233445566 567888888777
Q ss_pred HHHHHhhc--------------CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 150 LDSLLQRL--------------RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 150 l~~l~~~l--------------~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++++...+ ....++++|.+|+|||||+|.|.+.
T Consensus 172 v~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp HHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred hHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 77765442 1247899999999999999999984
No 93
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.96 E-value=2.4e-11 Score=114.35 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=74.7
Q ss_pred HHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce-eeEEEEEEE
Q 020346 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSLLP 230 (327)
Q Consensus 153 l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~-tt~~i~~v~ 230 (327)
+++.+ +|++++|+||||||||||++.|+| +++|++|+|.++|.++...+........ .+.++++++
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag------------~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH------------RLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHH------------HHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHH------------HHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 44444 789999999999999999999999 9999999999999887543210000000 123578888
Q ss_pred ccCC-Ce----EEeCccc------CCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc--eEEcc
Q 020346 231 LSGG-GY----LADTPGF------NQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG 292 (327)
Q Consensus 231 q~~~-~~----i~Dtpg~------~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~--~~v~~ 292 (327)
|.++ .. +.|+..+ ....++........ ......|| +||+.+++++ ..+|. ++|+|
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~---~~~~~eLS---kqr~~iaral-~~~P~e~lLvLD 228 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTN---YSLMEELI---ACKKAVGKIV-SGAPNEILLVLD 228 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCC---HHHHHHHH---HHHHHHHTTS-TTCCSEEEEEEE
T ss_pred ecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcch---hHHHHHHH---HHHHHHHHhh-ccCCCeeEEEEe
Confidence 8643 21 1111100 00011111111111 22233388 8999999988 88999 99988
No 94
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.93 E-value=1.4e-10 Score=109.28 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce-eeEEEEEEEccCCC-
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSLLPLSGGG- 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~-tt~~i~~v~q~~~~- 235 (327)
+|++++|+||||||||||+++|+| +++|++|+|.+.|.++............ .+..+++++|.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag------------ll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 168 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR------------YYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTD 168 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH------------HHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH------------HHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCC
Confidence 589999999999999999999999 9999999999999987543210000000 12347788886432
Q ss_pred -------------------eEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCce--EEcccH
Q 020346 236 -------------------YLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC--VVKGDW 294 (327)
Q Consensus 236 -------------------~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~--~v~~~~ 294 (327)
.++||+|.. +........|| +|+..+++++ ..+|.. +++|..
T Consensus 169 p~~~v~~~v~~~~~~~~d~~llDt~G~~-------------~~~~~~~~eLs---~~r~~iaRal-~~~P~~~lLvLDa~ 231 (304)
T 1rj9_A 169 SAALAYDAVQAMKARGYDLLFVDTAGRL-------------HTKHNLMEELK---KVKRAIAKAD-PEEPKEVWLVLDAV 231 (304)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCCC-------------TTCHHHHHHHH---HHHHHHHHHC-TTCCSEEEEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCCCC-------------CchHHHHHHHH---HHHHHHHHhh-cCCCCeEEEEEcHH
Confidence 123333321 11122222355 6888899888 889993 335643
No 95
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=107.11 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=53.0
Q ss_pred eccCcchhhHHHHHhhc-CCCE--EEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCC
Q 020346 141 FCSVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~l-~g~~--v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~ 217 (327)
.++|++.. ++++++.+ +|++ ++|+|+||||||||+|+|+|.. ++|.++......
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------------------l~g~~~~~~~~~-- 78 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------------------FEGEPATHTQPG-- 78 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------------------C-------CCSS--
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------------------ccCCcCCCCCcc--
Confidence 56676666 99999998 8999 9999999999999999999921 233333322211
Q ss_pred CcceeeEEEEEEEccCC----CeEEeCcccCCc
Q 020346 218 RGKHTTRHVSLLPLSGG----GYLADTPGFNQP 246 (327)
Q Consensus 218 ~g~~tt~~i~~v~q~~~----~~i~Dtpg~~~~ 246 (327)
.+...+++++|..+ .++.|++++...
T Consensus 79 ---~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 79 ---VQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp ---CEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred ---ceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 14567899999764 478999998753
No 96
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.91 E-value=1.4e-09 Score=104.46 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCceeecc---Ccc--hhhH---------HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc
Q 020346 136 GYEPLFCS---VES--KLGL---------DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200 (327)
Q Consensus 136 ~~~~~~~s---~~~--~~~l---------~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G 200 (327)
.|+.+.++ |.. ..++ +++++.+ +|+.++|+||||||||||+|+|+| +++|++|
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~------------~~~~~~g 204 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQ------------EIPFDQR 204 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHT------------TSCTTSC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHh------------cCCCCce
Confidence 45666666 642 3344 8999987 999999999999999999999999 9999999
Q ss_pred ceeecceeeccccccCCCcceeeEEEEEEE-cc
Q 020346 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLP-LS 232 (327)
Q Consensus 201 ~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~-q~ 232 (327)
.|.++|.. +..... ....+++++ |.
T Consensus 205 ~I~ie~~~--e~~~~~-----~~~~v~~v~~q~ 230 (361)
T 2gza_A 205 LITIEDVP--ELFLPD-----HPNHVHLFYPSE 230 (361)
T ss_dssp EEEEESSS--CCCCTT-----CSSEEEEECC--
T ss_pred EEEECCcc--ccCccc-----cCCEEEEeecCc
Confidence 99998752 322111 234678887 64
No 97
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.83 E-value=1.4e-10 Score=111.70 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=74.9
Q ss_pred HHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcce-eeEEEEEEE
Q 020346 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH-TTRHVSLLP 230 (327)
Q Consensus 153 l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~-tt~~i~~v~ 230 (327)
+++.+ +|++++|+|+||||||||++.|+| +++|++|+|.++|.++...+........ .+..+++++
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag------------~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~ 217 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH------------RLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 217 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHH------------HHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHh------------hccccCCEEEEecccccccchhHHHHHHHHhcCeEEEE
Confidence 34444 689999999999999999999999 9999999999999887543210000000 124578888
Q ss_pred ccCC-Ce----EEeCcc------cCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCc--eEEcc
Q 020346 231 LSGG-GY----LADTPG------FNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPG--CVVKG 292 (327)
Q Consensus 231 q~~~-~~----i~Dtpg------~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~--~~v~~ 292 (327)
|..+ .. +.|+.. .....++........ ......|| +||+.+++++ ..+|. ++|+|
T Consensus 218 q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~---~~~~~eLS---kqr~~iaral-~~~P~e~lLvLD 285 (359)
T 2og2_A 218 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTN---YSLMEELI---ACKKAVGKIV-SGAPNEILLVLD 285 (359)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCC---HHHHHHHH---HHHHHHHHHS-TTCCSEEEEEEE
T ss_pred ecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhh---hhHHHHHH---HHHHHHHHHH-hcCCCceEEEEc
Confidence 8643 21 111110 000011111111111 12223378 8899999888 88999 99988
No 98
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=98.81 E-value=5.8e-09 Score=77.35 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=48.2
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|+++.+ |+|+|..+ +|..+.|.++|+|+++...+.|||+|.++..+.+...|.|+
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~-~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELE-NGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CCEEEEEECSSSEEEEEET-TSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEEeCCcEEEEEEC-CCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 7899999998 77788543 67899999999999888899999999998654344566664
No 99
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.79 E-value=1.9e-10 Score=121.50 Aligned_cols=34 Identities=38% Similarity=0.481 Sum_probs=29.9
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHH-HcC
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINA-LRS 181 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~-L~g 181 (327)
.+++++++.+ +|++++|+|+||||||||++. |.|
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 3578888887 899999999999999999997 654
No 100
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.76 E-value=2.6e-10 Score=105.56 Aligned_cols=123 Identities=13% Similarity=0.062 Sum_probs=71.1
Q ss_pred CcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCccee
Q 020346 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (327)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~t 222 (327)
+.+...++++++.+ +| ++|+||||+|||||+++|++ ...+ |.|.++|.++....... .
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~------------~~~~--~~i~i~g~~l~~~~~~~-----~ 88 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVAN------------ESGL--NFISVKGPELLNMYVGE-----S 88 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHH------------HTTC--EEEEEETTTTCSSTTHH-----H
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHH------------HcCC--CEEEEEcHHHHhhhhhH-----H
Confidence 34566788888887 45 99999999999999999999 5555 67888876653321100 1
Q ss_pred eEEEEEEEcc-----CCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 223 TRHVSLLPLS-----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 223 t~~i~~v~q~-----~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
.+.++++++. +...++|..-........-...........+...|||||+|+..|+.++ .+.|..
T Consensus 89 ~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~-tn~p~~ 158 (274)
T 2x8a_A 89 ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAA-TNRPDI 158 (274)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEE-ESCGGG
T ss_pred HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEee-cCChhh
Confidence 1223333332 1224445543221110000001111223334455999999999998877 777754
No 101
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.75 E-value=1.6e-09 Score=115.42 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=34.5
Q ss_pred hcCccccccccccccccccC---CceEEcccH------HHHHHHHHHHHHHHHhH
Q 020346 266 MLKANEPAKCSFNNCLHLGE---PGCVVKGDW------ERYQYYFQLLDEIRIRE 311 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~~e---p~~~v~~~~------~r~~~~~~ll~e~~~~~ 311 (327)
.|||||+||+++|+++ +.+ |.++|+|+| ...+.+.++++++.+.+
T Consensus 805 ~LSGGErQRV~LAraL-~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G 858 (916)
T 3pih_A 805 TLSGGEAQRIKLASEL-RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858 (916)
T ss_dssp TCCHHHHHHHHHHHHH-TSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHH-hhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4999999999999988 554 579999965 45666667777775544
No 102
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.74 E-value=6.6e-10 Score=104.88 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=75.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC-----------CCcceeeEEEEE
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS-----------GRGKHTTRHVSL 228 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~-----------~~g~~tt~~i~~ 228 (327)
++++|+|+||||||||+|.|.|.... ..--.+.|+.|+|.++|.++....... .++ .....+++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~----~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~-~~~~~l~~ 79 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG----YKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSN-ELEDALLD 79 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC----CCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTS-CHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC----CcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccH-HHHHHHHH
Confidence 47899999999999999999982100 000023789999999999886542110 000 02223444
Q ss_pred E---EccC----CCeEEeCcccCCccc--cc----------------cCHhHHhhhhHHHHHhcCccccccccccccccc
Q 020346 229 L---PLSG----GGYLADTPGFNQPSL--LK----------------VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 229 v---~q~~----~~~i~Dtpg~~~~~l--~~----------------~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
+ +|.. ...++++.++..+.. .. ++.-++... ......||+||+|+...+..+ +
T Consensus 80 l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~-~~~~~~ls~g~~Q~~~ad~il-l 157 (318)
T 1nij_A 80 LLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHA-DEQMNQFTIAQSQVGYADRIL-L 157 (318)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTH-HHHHHHCHHHHHHHHTCSEEE-E
T ss_pred HHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHH-HHHHhhchHHHHHHHhCCEEE-E
Confidence 4 3432 456778877653210 00 000011111 111124899999998655444 6
Q ss_pred cCCceEEcccHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDWERYQYYFQLLDEI 307 (327)
Q Consensus 284 ~ep~~~v~~~~~r~~~~~~ll~e~ 307 (327)
+.|+.. +++ +...++++++
T Consensus 158 ~k~dl~--de~---~~l~~~l~~l 176 (318)
T 1nij_A 158 TKTDVA--GEA---EKLHERLARI 176 (318)
T ss_dssp ECTTTC--SCT---HHHHHHHHHH
T ss_pred ECcccC--CHH---HHHHHHHHHh
Confidence 788776 554 3444445444
No 103
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.73 E-value=1.1e-09 Score=109.08 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=49.2
Q ss_pred chhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccc
Q 020346 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (327)
Q Consensus 146 ~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s 213 (327)
+..+++++++.++.++++|+||||||||||+++|+| +++|++|+|.++|.++...+
T Consensus 16 ~~~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 16 NWNGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVT------------ALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EETTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHH------------HHCCCTTTCCCCCTTSCSCC
T ss_pred ccccccceEEEEccceEEEECCCCCcHHHHHHHHhc------------CCCCCCCEEEECCEEcccCc
Confidence 455788888888339999999999999999999999 99999999999999886544
No 104
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.71 E-value=5.8e-09 Score=99.88 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=86.0
Q ss_pred ceeeccCc-chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecccccc
Q 020346 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (327)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~ 215 (327)
+.+...|. ...+++++ +.+ +|++++|+|+||||||||+++|+| +.+|+.|.|.+.|++..++...
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g------------~~~~~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICN------------GASADIIVLALIGERGREVNEF 115 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHH------------HSCCSEEEEEEESCCHHHHHHH
T ss_pred cccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCEEEEEEecccHHHHHHH
Confidence 44555565 56789999 887 999999999999999999999999 8899999999988764333210
Q ss_pred CCC-cc-eeeEEEEEEEccCCCeEEeCcccCCccccccCHhHHhhhhH----------HHHHhcCccccccccccccccc
Q 020346 216 SGR-GK-HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP----------EIKEMLKANEPAKCSFNNCLHL 283 (327)
Q Consensus 216 ~~~-g~-~tt~~i~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~----------~~~~~LSgGq~q~~~~~~~~h~ 283 (327)
.+. +. ...+.+.++++.+ .|...... .......+...|. +-...||+|| |++.++ +
T Consensus 116 i~~~~~~~~~~~v~~~~~~~------~~~~~r~~-~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la----l 183 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSD------RPALERMK-AAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA----S 183 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTT------SCHHHHHH-HHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH----T
T ss_pred HHhhhhhhhhceEEEEECCC------CCHHHHHH-HHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH----c
Confidence 000 00 1223455666542 11110000 0000011111111 1123489999 888888 5
Q ss_pred cCCceEEcccHHHHHHHHHHHHHH
Q 020346 284 GEPGCVVKGDWERYQYYFQLLDEI 307 (327)
Q Consensus 284 ~ep~~~v~~~~~r~~~~~~ll~e~ 307 (327)
++|...-.=|+.-+....++++++
T Consensus 184 ~~p~~t~Gldp~~~~~l~~ller~ 207 (347)
T 2obl_A 184 GEPDVRGGFPPSVFSSLPKLLERA 207 (347)
T ss_dssp TCCCCBTTBCHHHHHHHHHHHTTC
T ss_pred CCCCcccCCCHHHHHHHHHHHHHH
Confidence 677763322566555555666554
No 105
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.71 E-value=3.3e-10 Score=120.50 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=29.6
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
.+++++++.+ .|++++|+|+||||||||++.|+
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3588888887 89999999999999999999864
No 106
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.70 E-value=6.1e-10 Score=118.85 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=29.6
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
.+++++++.+ .|++++|+|+||||||||++.|+
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3688888887 89999999999999999999964
No 107
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=98.68 E-value=6e-09 Score=77.30 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=48.3
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|+++.+ |+|+|..+ +|..+.|.++|+|++++..+.|||+|.++..+.+...|.|.
T Consensus 9 ~~G~Vi~~lg~~~y~V~~~-~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~ 68 (71)
T 1hr0_W 9 TEGVVTEALPNATFRVKLD-SGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68 (71)
T ss_dssp CEEECCCCCTTTBCCCEES-SSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEEC
T ss_pred EEEEEEEEeCCcEEEEEEC-CCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEE
Confidence 7899999998 77788543 57889999999999888999999999998754344566664
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.68 E-value=7.7e-09 Score=89.96 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=30.5
Q ss_pred CceeeccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++.+.++|+. .++++ +.+ +|..++|+|+||||||||+|.|+|
T Consensus 6 ~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 6 YQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp -----CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred hhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4455566653 56666 444 788999999999999999999999
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.68 E-value=1.3e-08 Score=104.16 Aligned_cols=58 Identities=19% Similarity=0.085 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-cccceeecceeeccccccCCCcceeeEEEEEEEcc
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS 232 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~ 232 (327)
.++|+|+||||||||+|+|+| ++.| ++|.|+++|.++....... ....+..+++++|.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G------------l~~P~~sG~vt~~g~~i~~~~~~~--~~~~~~~i~~v~Q~ 105 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG------------VALPRGSGIVTRCPLVLKLKKLVN--EDKWRGKVSYQDYE 105 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS------------CC-------CCCSCEEEEEEECSS--SSCCEEEESCC---
T ss_pred eEEEECCCCChHHHHHHHHhC------------CCCCCCCCeEEEcCEEEEEecCCc--cccceeEEeeeccc
Confidence 499999999999999999999 7778 8999999999864332111 11255667777653
No 110
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.65 E-value=9.7e-09 Score=100.66 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=69.7
Q ss_pred HHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEE
Q 020346 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (327)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v 229 (327)
+++++.+ .+..++|||+||||||||||+|++.. | .+.+.+... ....++++
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~-------------~-----~i~~~~ftT----------l~p~~G~V 199 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH-------------P-----KIAPYPFTT----------LSPNLGVV 199 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC-------------C-----EECCCTTCS----------SCCEEEEE
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC-------------c-----cccCcccce----------ecceeeEE
Confidence 4566666 68899999999999999999999921 1 111111111 22346677
Q ss_pred EccC--CCeEEeCcccCCccccc--cCHhHHh------------hhhHHHHHhcCccccccccccccccccCCceEEc
Q 020346 230 PLSG--GGYLADTPGFNQPSLLK--VTKQSLA------------QTFPEIKEMLKANEPAKCSFNNCLHLGEPGCVVK 291 (327)
Q Consensus 230 ~q~~--~~~i~Dtpg~~~~~l~~--~~~~~l~------------~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~~v~ 291 (327)
+++. ...+.|+||+....... +...-+. ....+....||+|++|+..++.++ ...|.++|+
T Consensus 200 ~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL-~~~P~ILVl 276 (416)
T 1udx_A 200 EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVAL 276 (416)
T ss_dssp ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEE
T ss_pred EecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHh-hcCCEEEEE
Confidence 7753 35788999975321110 1100000 000222344899999999998877 788999884
No 111
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.60 E-value=5.2e-10 Score=107.27 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc----cceeec
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL----GSKWFE 205 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~----G~i~~~ 205 (327)
|+.++|+|+||||||||+++|+| +++|++ |+|+++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g------------l~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA------------VFNTTSAWEYGREFVF 208 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH------------HTTCEEECCTTHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH------------HhCCCcchhhHHHHHH
Confidence 89999999999999999999999 999999 998875
No 112
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.60 E-value=6.2e-09 Score=98.14 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=33.0
Q ss_pred HhcCcccccccccccccc---ccCCceEEcccH------HHHHHHHHHHHHH
Q 020346 265 EMLKANEPAKCSFNNCLH---LGEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 265 ~~LSgGq~q~~~~~~~~h---~~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
..||+||+|++.++.++- +.+|.++|+||| ...+.+.++++++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 359999999999998773 268899999854 4666666677665
No 113
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.56 E-value=1.7e-08 Score=88.82 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=23.7
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.++++ ..+ +|++++|+||||||||||+|+|+|
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34555 344 899999999999999999999999
No 114
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.55 E-value=1.9e-08 Score=94.31 Aligned_cols=61 Identities=16% Similarity=0.020 Sum_probs=49.0
Q ss_pred cCCceeeccCcchhhHHHHHhhc--------------------CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRL--------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l--------------------~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~ 194 (327)
+.++.+...| .++++++++.+ +|++++|+|+||||||||+++|.| +
T Consensus 38 i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~------------~ 103 (308)
T 1sq5_A 38 LSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA------------L 103 (308)
T ss_dssp CCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH------------H
T ss_pred cchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH------------H
Confidence 4455666666 35677777654 578999999999999999999999 8
Q ss_pred cc--ccccceee---cceee
Q 020346 195 FE--PILGSKWF---EDQRV 209 (327)
Q Consensus 195 ~~--p~~G~i~~---~g~~v 209 (327)
+. |++|+|.+ +|...
T Consensus 104 l~~~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 104 LSRWPEHRRVELITTDGFLH 123 (308)
T ss_dssp HTTSTTCCCEEEEEGGGGBC
T ss_pred HhhCCCCCeEEEEecCCccC
Confidence 78 99999998 77653
No 115
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=98.55 E-value=5.5e-08 Score=73.36 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=47.5
Q ss_pred CeeEEEecCCCC-ceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEe
Q 020346 1 MRVIVQQSEPSR-TSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (327)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (327)
|.|+|+|+.|+. |+|.-+ +|.++.|.++|++++++..+.+||+|.++..+.+..+|.|.
T Consensus 16 ~~G~Vik~l~n~~f~V~l~-nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELE-NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp EEEEEEEEETTTEEEEEET-TSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 689999998554 567644 78899999999999988999999999999876554555543
No 116
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=98.55 E-value=4.5e-08 Score=79.52 Aligned_cols=65 Identities=28% Similarity=0.281 Sum_probs=55.0
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeeccccc
Q 020346 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST 67 (327)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~ 67 (327)
|.|+|+++.+ |+|+|.. .+|..+.|.++|+|++ ...+.+||+|.++..+.+...|.|..+++|..
T Consensus 34 ~~G~Vi~~lgn~~y~V~~-~dG~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~ 99 (117)
T 2oqk_A 34 EYGQVQRMLGNGRLDAYC-FDGQKRLCHIRGKMRK-KVWVNPGDIVLVSLRDFQDSKGDIILKYTPDE 99 (117)
T ss_dssp EEEEEEEEEETTEEEEEE-TTSCEEEEECCHHHHH-HSCCCTTCEEEEEECTTCTTEEEEEEECCHHH
T ss_pred EEEEEEEEcCCCEEEEEe-CCCCEEEEEEcCceec-CCcCCCCCEEEEEEEcCCCCeEEEEEEechHH
Confidence 6799999998 5667743 3688999999999998 88899999999998755566899999999863
No 117
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.53 E-value=1.4e-08 Score=90.54 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+|++++|+||||||||||+++|++.. +..+..|.+++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~----------~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG----------AEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH----------HHHHCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH----------HHhCCCeEEEEEccC
Confidence 89999999999999999999999310 546777777776654
No 118
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.51 E-value=1.8e-08 Score=96.25 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=49.3
Q ss_pred cCCCEEEEeecCCCCcHHHHHHHHhhhhhc--CCceeeccCcchhhHHHHHh-----------------h--------cC
Q 020346 106 TGIPLTLALNKVELVDEEVLNTWKSRLHTW--GYEPLFCSVESKLGLDSLLQ-----------------R--------LR 158 (327)
Q Consensus 106 ~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~l~~l~~-----------------~--------l~ 158 (327)
..++..++|||+|+.++.....|..+++.+ +......+.....+...+.. . ..
T Consensus 87 ~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 166 (357)
T 2e87_A 87 DRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLE 166 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 345666899999999988877887776653 33322222211211111110 0 13
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++|+|+||||||||+|.|.+
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999999
No 119
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.47 E-value=4.1e-08 Score=85.97 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+|+||||||||+++|.|
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999999
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.44 E-value=6.8e-08 Score=86.51 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc--cccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~v 209 (327)
+|+.++|+||||||||||+++|+| +++| ..|+|.+.+.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g------------~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK------------TQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH------------HSCTTTEEECCCEECSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc------------cCCCCceEEEEEecCCCC
Confidence 799999999999999999999999 7775 788888776543
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.44 E-value=9.3e-08 Score=82.12 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+|++++|+|+||||||||+++|++ . |+.|.|++++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~------------~--~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN------------L--PGVPKVHFHSDDLWG 47 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT------------C--SSSCEEEECTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh------------c--cCCCeEEEcccchhh
Confidence 789999999999999999999999 4 778999998876543
No 122
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.43 E-value=1.3e-07 Score=95.04 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=44.8
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
..+++++++.+ +|+.++|+||||||||||+|+|+| +++|++|.|.++|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~------------~i~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMM------------FIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGG------------GSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh------------hCCCCCCEEEEcCcc
Confidence 45678888877 889999999999999999999999 889999999998864
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.42 E-value=7.7e-08 Score=92.40 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=34.7
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-ccceeecc
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFED 206 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g 206 (327)
.+.++ ...+|..++|+||||||||||+++|+| +++|+ .|.|...+
T Consensus 114 ~l~~l-~~~~~g~i~I~GptGSGKTTlL~~l~g------------~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 114 VFKRV-SDVPRGLVLVTGPTGSGKSTTLAAMLD------------YLNNTKYHHILTIE 159 (356)
T ss_dssp HHHHH-HHCSSEEEEEECSTTSCHHHHHHHHHH------------HHHHHCCCEEEEEE
T ss_pred HHHHH-HhCCCCEEEEECCCCCCHHHHHHHHHh------------cccCCCCcEEEEcc
Confidence 45554 223778999999999999999999999 88887 45555433
No 124
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.42 E-value=6.3e-08 Score=84.85 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+||||||||||+|+|+|
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999999998
No 125
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.41 E-value=6.9e-08 Score=86.10 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=21.3
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc-C
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR-S 181 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~-g 181 (327)
.+..+++++.+ +|++++|+||||||||||+++|+ +
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC-
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44567888887 89999999999999999999999 8
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.40 E-value=7.6e-08 Score=91.42 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~ 212 (327)
+|++++|+||||||||||++.|+| +++|+.|+|.+.|.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag------------~l~~~~g~V~l~g~D~~r~ 170 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN------------WLKNHGFSVVIAASDTFRA 170 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEEEECCSST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHHhcCCEEEEEeeccccc
Confidence 689999999999999999999999 9999999999999987543
No 127
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.40 E-value=8.3e-08 Score=83.25 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+||||||||||+++|+|
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999999999999
No 128
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.39 E-value=3.3e-09 Score=95.91 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=67.6
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
.....++++++.+ +| ++|+||||+|||||+++|++ ... .|.+.+++.++....... ..
T Consensus 36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~------------~~~--~~~i~~~~~~~~~~~~~~-----~~ 94 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG------------EAR--VPFITASGSDFVEMFVGV-----GA 94 (254)
T ss_dssp HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHH------------HTT--CCEEEEEHHHHHHSCTTH-----HH
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHH------------HhC--CCEEEeeHHHHHHHHhhH-----HH
Confidence 3456778887776 44 99999999999999999998 332 677777776543221100 11
Q ss_pred EEEEEEEccC-----CCeEEeCcc-cCCccccc--cCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 224 RHVSLLPLSG-----GGYLADTPG-FNQPSLLK--VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 224 ~~i~~v~q~~-----~~~i~Dtpg-~~~~~l~~--~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
..+..+++.. ...++|... +....-.. ...........++...|||||+|+..++.++ .+.|..
T Consensus 95 ~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~-t~~p~~ 166 (254)
T 1ixz_A 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-TNRPDI 166 (254)
T ss_dssp HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEE-ESCGGG
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEc-cCCchh
Confidence 1122233321 123445431 11000000 0011222333445556999999998888776 666644
No 129
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.37 E-value=7.5e-09 Score=95.10 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=68.7
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceee
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
.....++++++.+ +| ++|+||||+|||||+++|++ ... .|.|.+++.++....... ..
T Consensus 60 ~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~------------~~~--~~~i~~~~~~~~~~~~~~-----~~ 118 (278)
T 1iy2_A 60 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG------------EAR--VPFITASGSDFVEMFVGV-----GA 118 (278)
T ss_dssp HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHH------------HTT--CCEEEEEHHHHHHSTTTH-----HH
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHH------------HcC--CCEEEecHHHHHHHHhhH-----HH
Confidence 3456778887777 44 99999999999999999998 332 677888776543321110 11
Q ss_pred EEEEEEEccC-----CCeEEeCcc-cCCccccc--cCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 224 RHVSLLPLSG-----GGYLADTPG-FNQPSLLK--VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 224 ~~i~~v~q~~-----~~~i~Dtpg-~~~~~l~~--~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
..+..+++.. ...++|... +....... ............+...|||||+|+..++.++ .+.|..
T Consensus 119 ~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~-t~~p~~ 190 (278)
T 1iy2_A 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-TNRPDI 190 (278)
T ss_dssp HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEE-ESCTTS
T ss_pred HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEe-cCCchh
Confidence 1122233321 223445432 11000000 0011222333445556999999998888777 666754
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.37 E-value=5.8e-08 Score=96.87 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccc-cCCCcceeeEEEEEEEccC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST-KSGRGKHTTRHVSLLPLSG 233 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~-~~~~g~~tt~~i~~v~q~~ 233 (327)
+|++++|+|+||||||||+++|+| ++.|+.|+|.+++.++..... ...+....++.+++++|..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg------------ll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~ 356 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR------------QFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 356 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred CCeEEEEECCCcccHHHHHHHHHH------------HhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence 689999999999999999999999 999999999998777643210 0000000234578888764
No 131
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.36 E-value=1.5e-08 Score=91.59 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC-CCcc--eeeEEEEEEEcc
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS-GRGK--HTTRHVSLLPLS 232 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~-~~g~--~tt~~i~~v~q~ 232 (327)
++++|+||||||||||+++|+| ++.|++|.|.++|.++...+... .... .....+++++|.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g------------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVT------------ALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHH------------HHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhc------------ccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 6779999999999999999999 89999999999998874332210 0000 124567888764
No 132
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.35 E-value=1.3e-07 Score=81.61 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
|++++|+||||||||||+++|++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999999
No 133
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.32 E-value=1.3e-07 Score=83.18 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc---cccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~v 209 (327)
+|++++|+||||||||||+++|.| +++| +.|.|.++|..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~------------~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA------------ALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH------------HHHHTTCCEEEEESGGGBC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHhhcCCceEEEecCCCcC
Confidence 689999999999999999999999 7775 356666665543
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.27 E-value=6.3e-08 Score=97.24 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+|+||+|||||++.|++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 899999999999999999999999
No 135
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.26 E-value=4e-07 Score=80.03 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+||||||||||+++|+|
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999999998
No 136
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.26 E-value=1.6e-06 Score=73.56 Aligned_cols=58 Identities=36% Similarity=0.523 Sum_probs=38.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEe
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~D 239 (327)
-.++|+|++|||||||+|.|.+... ...+...+ ++....+........++|
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~-------------------------~~~~~~~~----~t~~~~~~~~~~~~~i~D 74 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKI-------------------------AFVSKTPG----KTRSINFYLVNSKYYFVD 74 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCC-------------------------SCCCSSCC----CCCCEEEEEETTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCcc-------------------------ccccCCCC----CccCeEEEEECCcEEEEE
Confidence 4799999999999999999998321 11111111 344444444555678999
Q ss_pred CcccCCc
Q 020346 240 TPGFNQP 246 (327)
Q Consensus 240 tpg~~~~ 246 (327)
|||+...
T Consensus 75 t~G~~~~ 81 (195)
T 3pqc_A 75 LPGYGYA 81 (195)
T ss_dssp CCCBSSS
T ss_pred CCCCccc
Confidence 9997654
No 137
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.26 E-value=1.3e-07 Score=99.06 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=66.2
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc-cccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF-EPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~-~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
.+++++++. |++++|+||||+|||||+++|+| +. .|+.|.+. +. ....+
T Consensus 567 ~vl~disl~--g~i~~I~GpNGsGKSTlLr~iag------------l~~~~~~G~~v---------pa-------~~~~i 616 (765)
T 1ewq_A 567 FVPNDLEMA--HELVLITGPNMAGKSTFLRQTAL------------IALLAQVGSFV---------PA-------EEAHL 616 (765)
T ss_dssp CCCEEEEES--SCEEEEESCSSSSHHHHHHHHHH------------HHHHHTTTCCB---------SS-------SEEEE
T ss_pred eEeeeccCC--CcEEEEECCCCCChHHHHHHHHh------------hhhhcccCcee---------eh-------hccce
Confidence 345566666 99999999999999999999999 54 36777642 10 12234
Q ss_pred EEEEccCCCeEEeCcccCCccccccCHhHHhhhhHHHHHhcCcccccccccccccc-ccCCceEEcccH---H----HHH
Q 020346 227 SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIKEMLKANEPAKCSFNNCLH-LGEPGCVVKGDW---E----RYQ 298 (327)
Q Consensus 227 ~~v~q~~~~~i~Dtpg~~~~~l~~~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h-~~ep~~~v~~~~---~----r~~ 298 (327)
+++++ +....+.. ++ +...+|+|+.++..++.+++ +.+|.++|+|+| . ...
T Consensus 617 ~~v~~-----i~~~~~~~----d~------------l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~ 675 (765)
T 1ewq_A 617 PLFDG-----IYTRIGAS----DD------------LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA 675 (765)
T ss_dssp CCCSE-----EEEECCC----------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH
T ss_pred eeHHH-----hhccCCHH----HH------------HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH
Confidence 44433 11111111 11 11125666777777766542 679999999987 2 223
Q ss_pred HHHHHHHHHHH
Q 020346 299 YYFQLLDEIRI 309 (327)
Q Consensus 299 ~~~~ll~e~~~ 309 (327)
...++++.+.+
T Consensus 676 ~~~~i~~~L~~ 686 (765)
T 1ewq_A 676 IATAVAEALHE 686 (765)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33456655544
No 138
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.26 E-value=2.6e-07 Score=88.80 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=33.7
Q ss_pred hcCccccccccccccccc-----cCCceEEcccH------HHHHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHL-----GEPGCVVKGDW------ERYQYYFQLLDEIRI 309 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~-----~ep~~~v~~~~------~r~~~~~~ll~e~~~ 309 (327)
.|||||+||++++.++.. .+|+++++|+| ...+.+.++++++..
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~ 333 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER 333 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 399999999999987732 79999999954 566666666666643
No 139
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.25 E-value=1.4e-06 Score=74.23 Aligned_cols=61 Identities=28% Similarity=0.418 Sum_probs=37.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
--.++|+|++|||||||+|.|.+.. + ....+...+ +|....+...+....++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~----------~--------------~~~~~~~~~----~t~~~~~~~~~~~~~l~ 74 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK----------N--------------LARTSSKPG----KTQTLNFYIINDELHFV 74 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-----------------------------------------CCEEEEEETTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----------C--------------ccccCCCCC----ceeeEEEEEECCcEEEE
Confidence 3579999999999999999999832 1 111111111 34444444445567899
Q ss_pred eCcccCCcc
Q 020346 239 DTPGFNQPS 247 (327)
Q Consensus 239 Dtpg~~~~~ 247 (327)
||||+....
T Consensus 75 Dt~G~~~~~ 83 (195)
T 1svi_A 75 DVPGYGFAK 83 (195)
T ss_dssp ECCCBCCCS
T ss_pred ECCCCCccc
Confidence 999986543
No 140
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.24 E-value=8.3e-07 Score=84.67 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=33.8
Q ss_pred hhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccccee
Q 020346 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (327)
Q Consensus 147 ~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~ 203 (327)
..+++++++.++ .++|||++|||||||+|+|.|.. ++++.+|.+.
T Consensus 24 ~~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~----------~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKD----------FLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC--EEEEECBTTSSHHHHHHHHHTSC----------CSCCCSSSCC
T ss_pred ccccccccccCC--EEEEECCCCCcHHHHHHHHhCCC----------cCCCCCCccc
Confidence 357888888887 89999999999999999999954 6667777654
No 141
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.23 E-value=3.2e-07 Score=79.99 Aligned_cols=53 Identities=25% Similarity=0.178 Sum_probs=41.6
Q ss_pred cchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccce--eecceeec
Q 020346 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK--WFEDQRVG 210 (327)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i--~~~g~~v~ 210 (327)
+.-...+...+.. +|++++|+|+||||||||.++|.+ .+. ..|.+ ++++.++.
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~------------~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQ------------MLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHH------------HHH-HTTCCEEEEEHHHHT
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH------------HHH-hcCceEEEecCchhh
Confidence 3344556666654 799999999999999999999999 555 67888 88876653
No 142
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.22 E-value=4.4e-07 Score=83.84 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=41.3
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-ceeecce
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQ 207 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~ 207 (327)
.+|+++++.+ +|+.++|+|+||+|||||++.|++ ...|++| .|.+.+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~------------~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL------------QWGTAMGKKVGLAML 72 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHH------------HHHHTSCCCEEEEES
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH------------HHHHHcCCeEEEEeC
Confidence 4799999877 899999999999999999999999 7888878 6755443
No 143
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.21 E-value=3.7e-07 Score=88.02 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=40.4
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccc-ccceeecceee
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRV 209 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~v 209 (327)
.+++++ .-+|+.++|+||||||||||+++|++ +++|+ +|+|.+.+.++
T Consensus 127 ~l~~l~-~~~g~~i~ivG~~GsGKTTll~~l~~------------~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC-HRKMGLILVTGPTGSGKSTTIASMID------------YINQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT-TSSSEEEEEECSSSSSHHHHHHHHHH------------HHHHHSCCEEEEEESSC
T ss_pred HHHHHh-hcCCCEEEEECCCCCCHHHHHHHHHh------------hcCcCCCcEEEEecccH
Confidence 466654 23799999999999999999999999 99998 89997776654
No 144
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.20 E-value=7.9e-08 Score=103.69 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=31.3
Q ss_pred eeccC-cchhhHHHHHhhc-C-------CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 140 LFCSV-ESKLGLDSLLQRL-R-------DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 140 ~~~s~-~~~~~l~~l~~~l-~-------g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.| ++..+++++++.+ + |++++|+||||+||||||+++ |
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-G 810 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-G 810 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-H
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-H
Confidence 45555 4456788888877 3 799999999999999999999 8
No 145
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.18 E-value=1.3e-06 Score=81.46 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
++..++|+|+||||||||+|.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4558999999999999999999993
No 146
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.17 E-value=1.9e-06 Score=75.34 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357999999999999999999994
No 147
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.17 E-value=4.4e-07 Score=81.67 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc---CCCCCCCcccccccccccccceeeccee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~---g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
++++++|+|+||||||||+++|+ | +..|++|+|.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg------------~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG------------LQHLSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC------------CCCEEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC------------CeEecHHHHHHHHHh
Confidence 57899999999999999999999 9 888999999887643
No 148
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.16 E-value=7.2e-07 Score=76.63 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++|+.++|+||||||||||+|+|++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999999998
No 149
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.16 E-value=6.6e-07 Score=81.78 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=33.0
Q ss_pred cCCcee-eccC-cchhhHHHHHhhc-C---CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 135 WGYEPL-FCSV-ESKLGLDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 135 ~~~~~~-~~s~-~~~~~l~~l~~~l-~---g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.++.+ +++| ....+++++++.+ + |++++|+|+|||||||+.++|++
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345566 7788 6678999999998 5 99999999999999999999986
No 150
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.14 E-value=5.8e-07 Score=81.66 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc---CCCCCCCccccccccccccccee--------ecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKW--------FEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~---g~~~~~~~~~~~~~~~p~~G~i~--------~~g~~v~ 210 (327)
+|.+++|+||||||||||+++|+ | +..|++|.+. .+|.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg------------~~~~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN------------WRLLDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT------------CEEEEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------------CCcCCCCceehHhHHHHHHcCCCcc
Confidence 68999999999999999999999 8 8899999999 8887763
No 151
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.14 E-value=2.8e-07 Score=87.16 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=56.9
Q ss_pred CCceeeccCcchhhHHHHHhhc-CC-------CEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 136 GYEPLFCSVESKLGLDSLLQRL-RD-------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g-------~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
..+.+...++...+++++++.+ .| ..++|+||||+|||||+++|++.... -..|++|.+..++.
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--------~~~~~sg~~~~~~~ 91 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVLVKQG 91 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTCCSHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEechHhcCHH
Confidence 3445555677778899998886 33 68999999999999999999992100 12788999887776
Q ss_pred eeccccccCCCcceeeEEEEEEEcc
Q 020346 208 RVGEVSTKSGRGKHTTRHVSLLPLS 232 (327)
Q Consensus 208 ~v~~~s~~~~~g~~tt~~i~~v~q~ 232 (327)
++....... ....+.++++.
T Consensus 92 ~l~~~~~~~-----~~~~v~~iDE~ 111 (334)
T 1in4_A 92 DMAAILTSL-----ERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHC-----CTTCEEEEETG
T ss_pred HHHHHHHHc-----cCCCEEEEcch
Confidence 654332111 12346667664
No 152
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.13 E-value=1.7e-06 Score=88.27 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=45.7
Q ss_pred cCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccc-cceeecceee
Q 020346 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFEDQRV 209 (327)
Q Consensus 143 s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~-G~i~~~g~~v 209 (327)
-++...+++.+++.+ .|+.++|+||||+|||||+++|++ ++.+.. |.+.+++.+.
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~------------~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE------------LLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH------------TSCCSSCEEEEEECCTT
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc------------cCCcccCCeEEEeCCcc
Confidence 356778899999987 899999999999999999999999 666666 6777766544
No 153
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.11 E-value=2.7e-06 Score=79.55 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999994
No 154
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.09 E-value=6.7e-07 Score=76.87 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
|++++|+||||||||||++.|++ |.+|.+++++.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---------------~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---------------QLDNSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---------------HSSSEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---------------ccCCeEEEcccchh
Confidence 56899999999999999999986 45688888876654
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.08 E-value=1.7e-06 Score=74.59 Aligned_cols=22 Identities=41% Similarity=0.757 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|+||||||||+|.|.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 156
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.06 E-value=4.4e-06 Score=70.67 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+|..++|+|+||||||||+|.|.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999983
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.06 E-value=1.7e-06 Score=76.31 Aligned_cols=25 Identities=48% Similarity=0.672 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+|+.++|+||||||||||+|.|++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHh
Confidence 3799999999999999999999998
No 158
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.05 E-value=1e-06 Score=94.19 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=28.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHc
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
.+++++++.+ +|++++|+||||+||||||+++.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3555777776 68999999999999999999993
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.04 E-value=1.6e-06 Score=75.45 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+|+.++|+|+||||||||+++|.+ .+ |.+++++.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~------------~~----g~~~i~~d~~~ 64 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD------------ET----GLEFAEADAFH 64 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH------------HH----CCEEEEGGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH------------hh----CCeEEcccccc
Confidence 689999999999999999999998 43 78888776653
No 160
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.02 E-value=2.9e-07 Score=98.12 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=29.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++++++.+ +|++++|+||||+||||||+++.+
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 4555677766 689999999999999999999976
No 161
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.02 E-value=5e-06 Score=69.55 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|+||||||||+|.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999983
No 162
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.02 E-value=6.1e-06 Score=77.10 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|.||||||||+|.|+|.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999994
No 163
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.01 E-value=1.2e-06 Score=81.73 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++.+++|+|+||||||||.+.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999998
No 164
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.01 E-value=1.7e-06 Score=75.80 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=39.5
Q ss_pred hhHHHHHh-hc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 148 LGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 148 ~~l~~l~~-~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
..|+++.. -+ +|+.++|+|+||+|||||++.|++ ...+..|.+.+.+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~------------~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIA------------KGLRDGDPCIYVTTE 60 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHH------------HHHHHTCCEEEEESS
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHH------------HHHHCCCeEEEEEcc
Confidence 45677665 34 899999999999999999999998 666777887776543
No 165
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.98 E-value=1e-05 Score=73.83 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|++|||||||+|.|.|.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999993
No 166
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.98 E-value=2.8e-06 Score=73.50 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+|+||||||||+++|.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999998
No 167
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.98 E-value=1.3e-05 Score=67.82 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..++|+|++|||||||+|.|.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999998
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.98 E-value=5.8e-06 Score=73.78 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|+|.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 47999999999999999999994
No 169
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.97 E-value=6.6e-06 Score=74.37 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.-.++|+|.+|||||||+|.|+|..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999999943
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.96 E-value=3.4e-06 Score=72.76 Aligned_cols=22 Identities=41% Similarity=0.757 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|+||||||||+|.|.|.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 171
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.96 E-value=1.2e-05 Score=73.23 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999993
No 172
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.95 E-value=1.4e-05 Score=75.37 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=70.2
Q ss_pred cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCCceeeccCcchhhHHHH
Q 020346 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153 (327)
Q Consensus 74 ~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l 153 (327)
.+|.|..++ .++. +.++...+++++ ....|.+|++|.|..+++-. +..++.+++++..+......+..+
T Consensus 53 ~Gn~E~~yL-~~L~-~e~~~~rler~l-----~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l 121 (314)
T 1ko7_A 53 LGTTELSFY-NLLP-DEERKGRMRKLC-----RPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRL 121 (314)
T ss_dssp ECHHHHHHH-HHSC-HHHHTTHHHHHC-----CTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHH
T ss_pred EechhHHHH-HhcC-HHHHHHHHHHHh-----cCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHH
Confidence 466676655 3333 344556777776 35678899999999876533 223334788888888777766666
Q ss_pred Hhhc-----------------CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 154 LQRL-----------------RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 154 ~~~l-----------------~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
...+ .|..++|+|+||+|||||...|...
T Consensus 122 ~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 122 TTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp HHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred HHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5544 3889999999999999999999874
No 173
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.95 E-value=2e-06 Score=81.34 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=35.2
Q ss_pred eeeccCcchhhHHHHHhhc-CCC------EEEEEcCCCCCHHHHHHHHcC
Q 020346 139 PLFCSVESKLGLDSLLQRL-RDQ------TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~------~v~lvG~sG~GKSTLln~L~g 181 (327)
.+.+.|++...+.+++..+ .+. +++|+|+||||||||+++|.+
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455567778888888876 333 899999999999999999998
No 174
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.94 E-value=1.6e-05 Score=72.81 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.++|+|.+|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999843
No 175
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.94 E-value=5.8e-06 Score=79.88 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|||.||||||||+|+|.+.
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSB
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999993
No 176
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.93 E-value=6.2e-06 Score=80.10 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.|.+++|+|+||||||||+|+|+|.....+..--.+...|+.|.+.+.|..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~ 70 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 70 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcch
Confidence 6889999999999999999999994320111111225678999998877544
No 177
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.93 E-value=3.6e-06 Score=75.13 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+|+.++|+|+||||||||+++|.+ + .|+|.+.+.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~------------~----~g~v~~~~~~~~~ 56 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK------------Y----KNDICLLTEPVEK 56 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG------------G----TTTEEEECCTHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh------------c----cCCeEEEecCHHH
Confidence 689999999999999999999998 5 6888888877643
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.92 E-value=2.1e-06 Score=82.24 Aligned_cols=43 Identities=37% Similarity=0.437 Sum_probs=29.1
Q ss_pred cCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++..++..+..+.+.+++.+ .++|+|+||+|||||+|.|.+.
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~-----~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEF-----TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEE-----CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEeccchHHhCCeeecCCCCE-----EEEEEcCCCCCHHHHHHHHhCC
Confidence 455555555555544444433 4699999999999999999883
No 179
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.90 E-value=3.5e-06 Score=73.60 Aligned_cols=40 Identities=23% Similarity=0.012 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
+|.+++|+|+||||||||++.|.+ +++|..|.+.+.+.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~------------~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ------------TLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH------------HHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHhhcCCeEEEeccCc
Confidence 578999999999999999999998 7777778877655443
No 180
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.87 E-value=6.1e-06 Score=70.24 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=24.5
Q ss_pred HHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 152 ~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++++.+....++|+|+||||||||+++|.+
T Consensus 19 ~~~~~~~~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 19 KVVIPFSKGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CEEEECCSSEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEecCCCcEEEECCCCCCHHHHHHHHHH
Confidence 444555334999999999999999999988
No 181
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.87 E-value=2.1e-05 Score=72.14 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|.|.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999993
No 182
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.86 E-value=4.2e-06 Score=79.81 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
+.+++|+|+||||||||+|.|.+ ...|+.|+|.+.+.+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~------------~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK------------MLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEEECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH------------HhhhcCCeEEEEeecCC
Confidence 67899999999999999999999 77778888777665543
No 183
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.82 E-value=3e-05 Score=70.64 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.|.|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999993
No 184
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.82 E-value=1.6e-05 Score=68.24 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=21.5
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++++++..+.-.++|+|++|||||||+|.|.+.
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 5677777766678999999999999999999973
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.82 E-value=1.2e-05 Score=73.40 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-+++++|.+|+|||||+|.|.+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=8.5e-06 Score=70.79 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=23.0
Q ss_pred chhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...+++++++.+ +++.++|+|+|||||||+.+.|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999997 889999999999999999999986
No 187
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.82 E-value=2.3e-05 Score=64.64 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999984
No 188
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.81 E-value=5.6e-06 Score=78.60 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=41.1
Q ss_pred ccCcchhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecce
Q 020346 142 CSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (327)
.+|....+++++++.. ++.+++|+|+||+|||||+|.|++ .+.+..|++.+-+.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~------------~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 38 HQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM------------LLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH------------HHHHTTCCEEEEEE
T ss_pred hhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH------------HHHhcCCeEEEEee
Confidence 3444556788888876 788999999999999999999987 55555555554433
No 189
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.81 E-value=8.5e-06 Score=71.53 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+||||||||||++.|++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999999998
No 190
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=5.7e-06 Score=69.33 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+|+||+|||||+++|.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999999999
No 191
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.80 E-value=7.1e-06 Score=69.37 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+|+||||||||++.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 192
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.80 E-value=2.3e-05 Score=65.13 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999984
No 193
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.80 E-value=1.3e-05 Score=69.41 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=30.6
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.+++++++..+.-.++|+|++|||||||+|.|.+.
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 57788888776678999999999999999999983
No 194
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.80 E-value=1.4e-05 Score=72.69 Aligned_cols=23 Identities=43% Similarity=0.692 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|++.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999994
No 195
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.78 E-value=1.4e-05 Score=81.55 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..+++|+|++|+|||||+|.|.|.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHhHcCC
Confidence 357899999999999999999994
No 196
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.78 E-value=1.2e-05 Score=71.15 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccc-----cccceeeccee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (327)
+|++++|+||||+|||||++.|++.. ..+| ..|.+++++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~----------~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC----------QLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT----------TSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH----------hCchhcCCCCCeEEEEECCC
Confidence 78999999999999999999999832 2334 46777777654
No 197
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=78.49 Aligned_cols=51 Identities=25% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v 209 (327)
.+..++|||+||||||||+|+|.+........ -.+...|..|.+.+.+..+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~-p~tTi~p~~g~v~v~~~r~ 71 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENF-PFCTIDPNESRVPVPDERF 71 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCC-CccccCceeEEEEECCccc
Confidence 57789999999999999999999942100000 0012456777776655443
No 198
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.77 E-value=2.6e-05 Score=70.27 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999984
No 199
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.77 E-value=2.9e-05 Score=63.91 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999973
No 200
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.77 E-value=2.3e-05 Score=72.18 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|+||||||||+|.|.|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999993
No 201
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.76 E-value=1.9e-05 Score=77.72 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
--+++|+|.||||||||+|.|.|
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999998
No 202
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.76 E-value=2.7e-05 Score=64.24 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6899999999999999999983
No 203
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.75 E-value=3.3e-05 Score=64.35 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
No 204
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.75 E-value=4e-05 Score=63.82 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 205
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.74 E-value=4e-05 Score=62.70 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999987
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.73 E-value=7.2e-06 Score=69.84 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|+.++|+||||+|||||+++|++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999999
No 207
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.72 E-value=1.5e-05 Score=76.06 Aligned_cols=50 Identities=30% Similarity=0.499 Sum_probs=39.1
Q ss_pred hhHHHHH-hhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccc--cccc----cc-eeecceee
Q 020346 148 LGLDSLL-QRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF--EPIL----GS-KWFEDQRV 209 (327)
Q Consensus 148 ~~l~~l~-~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~--~p~~----G~-i~~~g~~v 209 (327)
..|+.+. .-+ +|++++|+|+||+|||||++.|++ .. +|++ |. |++++.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~------------~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV------------MVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHH------------HTTSCGGGTSCSCEEEEEESSSC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH------------HhccchhcCCCCCeEEEEeCCCC
Confidence 3566553 334 899999999999999999999999 55 6777 57 88877654
No 208
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.70 E-value=4.4e-05 Score=62.79 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999997
No 209
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.70 E-value=5.2e-05 Score=72.87 Aligned_cols=78 Identities=26% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEE
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~ 238 (327)
+..++|||.||||||||+|+|.+........ -.+...|+.|.+.+.+..+..++.... .. .+++ ....++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~-p~tTi~p~~g~v~~~~~r~~~l~~~~~----~~---~~~~--~~i~lv 71 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANY-PFCTIEPNTGVVPMPDPRLDALAEIVK----PE---RILP--TTMEFV 71 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHC----CS---EEEC--CEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCC-CCceECceEEEEecCCcccceeeeeec----cc---ceee--eEEEEE
Confidence 4579999999999999999999843100000 011345667766665543222211100 00 0111 134678
Q ss_pred eCcccCCc
Q 020346 239 DTPGFNQP 246 (327)
Q Consensus 239 Dtpg~~~~ 246 (327)
||||+...
T Consensus 72 DtpGl~~~ 79 (363)
T 1jal_A 72 DIAGLVAG 79 (363)
T ss_dssp ECCSCCTT
T ss_pred ECCCCccc
Confidence 99998753
No 210
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.69 E-value=2.5e-05 Score=76.41 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|||++|||||||+|.|.|
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999998
No 211
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.69 E-value=3.8e-05 Score=63.17 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999973
No 212
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.69 E-value=4.4e-05 Score=65.21 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999973
No 213
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.69 E-value=2.5e-05 Score=65.85 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999983
No 214
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.68 E-value=6.9e-05 Score=61.69 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999983
No 215
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.68 E-value=1.6e-05 Score=66.74 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=60.5
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
.+....++|.+++|+++..+. +...+..++... ...+.|+++|.||+|+.++.. ..........++++.+.+|
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (181)
T 3t5g_A 71 PQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149 (181)
T ss_dssp CGGGTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEe
Confidence 334567899999999987642 233343333222 234789999999999964321 1222233445677889999
Q ss_pred CcchhhHHHHHhhcCCCEEEEEcCCCCCHHH
Q 020346 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174 (327)
Q Consensus 144 ~~~~~~l~~l~~~l~g~~v~lvG~sG~GKST 174 (327)
+.+..+++++-..+.......-|+.++||||
T Consensus 150 a~~~~~v~~l~~~l~~~~~~~~~~~~~gkss 180 (181)
T 3t5g_A 150 AKENQTAVDVFRRIILEAEKMDGACSQGKSS 180 (181)
T ss_dssp TTSHHHHHHHHHHHHHHHHTC-----CCBSC
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCcccCcCC
Confidence 9988888777665422112223788899986
No 216
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.67 E-value=4e-05 Score=70.83 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-.++|+|.+|||||||+|.|+|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999954
No 217
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.66 E-value=5.5e-05 Score=61.94 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999973
No 218
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.66 E-value=5.2e-05 Score=63.70 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999973
No 219
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.66 E-value=2.6e-05 Score=63.79 Aligned_cols=22 Identities=55% Similarity=0.685 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++++|++|||||||+|.|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
No 220
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.66 E-value=7.5e-05 Score=61.28 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
No 221
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.66 E-value=6e-05 Score=62.18 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999973
No 222
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.65 E-value=7.8e-06 Score=71.88 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceee
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (327)
+.+++|+|+|||||||+.++|.+... +..++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---------~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ---------WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT---------CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---------CCcccCcceee
Confidence 46899999999999999999987210 33788898877
No 223
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.65 E-value=1.8e-05 Score=67.06 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=56.9
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..|. +...+..++..... ...|+++|+||+|+.+... ...........++..+.+|+.
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRD-TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 34568999999999987642 33345555544443 3678899999999954321 112223344567788889998
Q ss_pred chhhHHHHHhhc-----CCCEEEEEcCCCCCHHH
Q 020346 146 SKLGLDSLLQRL-----RDQTTVIVGPSGVGKSS 174 (327)
Q Consensus 146 ~~~~l~~l~~~l-----~g~~v~lvG~sG~GKST 174 (327)
+..+++.+-..+ .....---+.+++||||
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 877776654432 21111112455999997
No 224
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.65 E-value=3.4e-06 Score=78.66 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=40.0
Q ss_pred HHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 152 ~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++++. +|++++|+|+||+||||++..|++ ++.+..|+|.+.+.++.
T Consensus 92 ~i~~~-~~~~i~i~g~~G~GKTT~~~~la~------------~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLAL------------YYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCC-SSEEEEEECCTTTTHHHHHHHHHH------------HHHHTTCCEEEEECCSS
T ss_pred eeecC-CCeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCeEEEecCCcc
Confidence 45555 789999999999999999999999 88888999999887654
No 225
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.65 E-value=5.3e-05 Score=62.95 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999983
No 226
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.65 E-value=6.4e-05 Score=63.00 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999996
No 227
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.64 E-value=4.2e-05 Score=63.01 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999973
No 228
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.64 E-value=7.7e-05 Score=63.94 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 229
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.64 E-value=7.3e-05 Score=60.93 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++++|++|||||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 230
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.63 E-value=1.6e-05 Score=74.73 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++++++|+|+|||||||++..|++ ++.++.|+|.+.+.++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~------------~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK------------MFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEEEECTT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH------------HHHhcCCEEEEEccccc
Confidence 578999999999999999999999 88888889988776653
No 231
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.63 E-value=6.9e-05 Score=63.70 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
No 232
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.63 E-value=7.4e-05 Score=65.83 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999983
No 233
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.62 E-value=1e-05 Score=81.96 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-ce-eecceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SK-WFEDQRVG 210 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~i-~~~g~~v~ 210 (327)
+|++++|+|+||||||||+++|++ .+.|++| ++ +++|..+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~------------~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA------------RLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH------------HHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH------------hhcccCCceEEEECCcHHH
Confidence 789999999999999999999999 8888887 67 48886653
No 234
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.62 E-value=6.5e-05 Score=62.39 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999987
No 235
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.62 E-value=3.2e-05 Score=74.20 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+++|+|+||||||||+|.|.|.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999994
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.62 E-value=1.9e-05 Score=73.73 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc-ceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~~v 209 (327)
+|++++|+|+|||||||+++.|++ ++.|++| +|.+-+.++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~------------~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA------------ISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH------------HHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH------------HHHHhcCCEEEEEecCc
Confidence 688999999999999999999999 8888888 677666554
No 237
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.61 E-value=7.6e-05 Score=63.79 Aligned_cols=22 Identities=36% Similarity=0.759 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
No 238
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.60 E-value=6.2e-05 Score=63.59 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999984
No 239
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.60 E-value=7.1e-05 Score=63.46 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999983
No 240
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.59 E-value=3.7e-05 Score=63.53 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 241
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.59 E-value=5.4e-05 Score=64.22 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999983
No 242
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.58 E-value=8.2e-05 Score=63.13 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999983
No 243
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.58 E-value=8.7e-05 Score=63.41 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999973
No 244
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.58 E-value=7.8e-05 Score=63.03 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999983
No 245
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.57 E-value=9.4e-05 Score=61.54 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999983
No 246
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.57 E-value=1.4e-05 Score=80.62 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=49.2
Q ss_pred cCCceeeccCcchhhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
.|.+.+...+....++.++++.++|..++|+||||+|||||+++|.+ ...+..|.|.+.+..
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~------------~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK------------SLGRKFVRISLGGVR 145 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH------------HHTCEEEEECCCC--
T ss_pred ccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCeEEEEecccc
Confidence 35555555555666778888888999999999999999999999999 777888888877643
No 247
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.57 E-value=7.2e-05 Score=62.87 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
No 248
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.56 E-value=8.3e-05 Score=63.98 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
No 249
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=2.5e-05 Score=73.27 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=34.5
Q ss_pred cchhhHHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 145 ESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 145 ~~~~~l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++..+++.+...+ +...+.|.||||+|||||+++|++. ++.|+.|.+.++|.+..
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~-----------l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES-----------IFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH-----------HSCTTCCC---------
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH-----------HcCCCCCeEEecceeec
Confidence 3455555555544 2223999999999999999999982 57889999999887654
No 250
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.55 E-value=3e-05 Score=77.05 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.|-.++|+|++|||||||+|.|.+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999984
No 251
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.55 E-value=0.00011 Score=61.52 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999973
No 252
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.55 E-value=8.2e-05 Score=62.14 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999983
No 253
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.55 E-value=4e-05 Score=74.01 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.8
Q ss_pred hhhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++++++.+ +|+.++|+||||+|||||+++|++
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35788888887 889999999999999999999998
No 254
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.55 E-value=9.1e-05 Score=63.45 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999983
No 255
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.54 E-value=1.2e-05 Score=75.91 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 153 l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
+++.. ++++++|+|+||+||||++..|++ ++.+..|+|.+.+.++..
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~------------~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMAN------------YYAELGYKVLIAAADTFR 145 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHH------------HHHHTTCCEEEEECCCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHH------------HHHHCCCeEEEEeCCCcc
Confidence 44443 688999999999999999999999 888899999998877643
No 256
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.54 E-value=3.6e-05 Score=75.31 Aligned_cols=22 Identities=50% Similarity=0.693 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|||.||||||||+|.|.+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 257
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.54 E-value=9e-05 Score=62.87 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999987
No 258
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.54 E-value=0.00012 Score=61.48 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999973
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=2.7e-05 Score=65.38 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++|+|+||||||||.+.|.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999998
No 260
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.54 E-value=1.1e-05 Score=80.81 Aligned_cols=119 Identities=16% Similarity=0.072 Sum_probs=63.0
Q ss_pred hhHHHHHhhc-CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEE
Q 020346 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i 226 (327)
..++++++.+ +| +.|+||||+|||||+++|.+ .. ..+.+.+++.++..... +. ....+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~------------~~--~~~~i~i~g~~~~~~~~--g~---~~~~v 112 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG------------EA--RVPFITASGSDFVEMFV--GV---GAARV 112 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHH------------HT--TCCEEEEEGGGGTSSCT--TH---HHHHH
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHH------------Hh--CCCEEEEehhHHHHhhh--hh---HHHHH
Confidence 3455555555 34 99999999999999999998 22 25567776655432210 10 00111
Q ss_pred EEEEcc-----CCCeEEeCcccCCcccc-c--cCHhHHhhhhHHHHHhcCccccccccccccccccCCce
Q 020346 227 SLLPLS-----GGGYLADTPGFNQPSLL-K--VTKQSLAQTFPEIKEMLKANEPAKCSFNNCLHLGEPGC 288 (327)
Q Consensus 227 ~~v~q~-----~~~~i~Dtpg~~~~~l~-~--~~~~~l~~~~~~~~~~LSgGq~q~~~~~~~~h~~ep~~ 288 (327)
..+++. +...++|.......... . -...+....+..+...||||+.++..+..++ .+.|..
T Consensus 113 ~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa-tn~p~~ 181 (499)
T 2dhr_A 113 RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-TNRPDI 181 (499)
T ss_dssp HHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC-CSCGGG
T ss_pred HHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe-cCChhh
Confidence 122222 12345565432211111 0 0112223444455566999999887666655 555543
No 261
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.54 E-value=7.8e-05 Score=64.75 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999997
No 262
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.53 E-value=0.00012 Score=61.09 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999983
No 263
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.53 E-value=8.9e-05 Score=63.80 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999973
No 264
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.51 E-value=0.00011 Score=61.88 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999983
No 265
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.49 E-value=0.00012 Score=61.87 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999973
No 266
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.48 E-value=8.2e-05 Score=61.41 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999987
No 267
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.47 E-value=6.5e-05 Score=62.59 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999873
No 268
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.47 E-value=2.7e-05 Score=66.19 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+|++||||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 269
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.47 E-value=9.7e-05 Score=62.88 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999973
No 270
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.47 E-value=9.1e-05 Score=63.56 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999973
No 271
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.46 E-value=0.00012 Score=63.05 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999983
No 272
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.45 E-value=8.3e-05 Score=62.32 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|++|||||||+|.|.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999997
No 273
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.44 E-value=7.7e-05 Score=62.12 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
+...++|+|++|||||||+|.|.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999984
No 274
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.44 E-value=0.00015 Score=61.51 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4799999999999999999987
No 275
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.43 E-value=6.1e-05 Score=63.95 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999983
No 276
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.43 E-value=0.00013 Score=62.63 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 357999999999999999999983
No 277
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.43 E-value=0.00017 Score=60.55 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999973
No 278
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.43 E-value=0.00011 Score=74.30 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-.++|+|.+|||||||+|.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999954
No 279
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.42 E-value=0.00015 Score=62.71 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999997
No 280
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.41 E-value=0.00017 Score=61.18 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
...++|+|.+|||||||+|.|.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999984
No 281
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.41 E-value=0.0001 Score=61.40 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999998
No 282
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.39 E-value=8.2e-05 Score=64.93 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC---CCeE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYL 237 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i 237 (327)
.++|+|.+|||||||+|.++. +..........+ ++.....+.... ...+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~------------------------~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~i 68 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLT------------------------GEFEKKYVATLG----VEVHPLVFHTNRGPIKFNV 68 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHH------------------------HHHTCEEETTTT----EEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHc------------------------CCCCCCCCCccc----eeEEEEEEEECCEEEEEEE
Q ss_pred EeCcc
Q 020346 238 ADTPG 242 (327)
Q Consensus 238 ~Dtpg 242 (327)
+||||
T Consensus 69 ~Dt~G 73 (221)
T 3gj0_A 69 WDTAG 73 (221)
T ss_dssp EEECS
T ss_pred EeCCC
No 283
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.39 E-value=0.00011 Score=60.19 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 284
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.39 E-value=6.8e-05 Score=65.25 Aligned_cols=24 Identities=50% Similarity=0.754 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+||||||||||.+.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999999986
No 285
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=0.00018 Score=62.39 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 286
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.38 E-value=0.0002 Score=60.66 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|.+|||||||+|.|.+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999998
No 287
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.38 E-value=0.0001 Score=76.16 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC-CCccee-eEEEEEEEccCCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS-GRGKHT-TRHVSLLPLSGGG 235 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~-~~g~~t-t~~i~~v~q~~~~ 235 (327)
++..++|+|++|+|||||++.|++.. ...+..|+| .+|..+....... .++-.. .....+.......
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~----------~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 76 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT----------GAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRV 76 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT----------TSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc----------CCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEE
Confidence 57899999999999999999999722 112366777 5555443322100 001001 1222222222245
Q ss_pred eEEeCcccCC
Q 020346 236 YLADTPGFNQ 245 (327)
Q Consensus 236 ~i~Dtpg~~~ 245 (327)
.++||||...
T Consensus 77 nliDTpG~~~ 86 (665)
T 2dy1_A 77 FLLDAPGYGD 86 (665)
T ss_dssp EEEECCCSGG
T ss_pred EEEeCCCccc
Confidence 7889999765
No 288
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.38 E-value=0.00018 Score=60.13 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 289
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.34 E-value=9.4e-05 Score=62.77 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+||||||||+|.|.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999998
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.34 E-value=0.00015 Score=70.50 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHc--CCCCCCCccccccccccccc-----ceeeccee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALR--SSPHASDAADVDNWFEPILG-----SKWFEDQR 208 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~--g~~~~~~~~~~~~~~~p~~G-----~i~~~g~~ 208 (327)
+|++++|+|+||+|||||++.|+ + ..+|+.| .++|++..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~------------~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC------------QIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT------------TSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh------------ccCcccCCCCCcEEEEeCCC
Confidence 78999999999999999999554 4 5555444 67777654
No 291
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.34 E-value=0.00033 Score=66.40 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
--.++|+|.+|||||||+|.|.|..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999954
No 292
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.34 E-value=5.4e-05 Score=66.26 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCccccccccccccc--ceeecceee
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG--SKWFEDQRV 209 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G--~i~~~g~~v 209 (327)
+|..++|+|++||||||+.+.|.+ .+.|..| .+++++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~------------~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH------------QLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH------------HHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH------------HhccccCCcEEEECChHH
Confidence 789999999999999999999998 6777778 777775443
No 293
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.34 E-value=0.00018 Score=61.16 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999973
No 294
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.33 E-value=0.00016 Score=61.53 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.+.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998877
No 295
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.33 E-value=0.00028 Score=60.25 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC---CCeE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYL 237 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i 237 (327)
.++|+|++|||||||+|.|.+ +.......... .......+..+. ...+
T Consensus 30 ki~v~G~~~vGKSsli~~l~~------------------------~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~~l 80 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT------------------------KRFIWEYDPTL-----ESTYRHQATIDDEVVSMEI 80 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH------------------------SCCCSCCCTTC-----CEEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------------------------CCCCcccCCCC-----CceEEEEEEECCEEEEEEE
Q ss_pred EeCcccCC
Q 020346 238 ADTPGFNQ 245 (327)
Q Consensus 238 ~Dtpg~~~ 245 (327)
+||||...
T Consensus 81 ~Dt~G~~~ 88 (196)
T 2atv_A 81 LDTAGQED 88 (196)
T ss_dssp EECCCCCC
T ss_pred EECCCCCc
No 296
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.32 E-value=0.00033 Score=59.83 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.|.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999983
No 297
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.32 E-value=0.00019 Score=61.04 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999983
No 298
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0002 Score=62.65 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
No 299
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.31 E-value=0.00015 Score=70.27 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|.+|||||||+|.|.+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999994
No 300
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.30 E-value=0.00012 Score=63.61 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=28.1
Q ss_pred hhHHHHHh-hc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~-~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..|+.+.. -+ +|++++|+|+||+|||||++.|++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35666654 34 899999999999999999999985
No 301
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.30 E-value=0.00023 Score=61.53 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
...++|+|++|||||||+|.|.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999983
No 302
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.30 E-value=4.8e-05 Score=75.29 Aligned_cols=25 Identities=48% Similarity=0.594 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.|-.++|+|++|||||||+|.|++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999983
No 303
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.29 E-value=0.00013 Score=61.20 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=9.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++|||||||+|.|.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999997
No 304
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.29 E-value=8e-05 Score=63.39 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhc
Confidence 3699999999999999999998
No 305
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.29 E-value=0.00031 Score=61.17 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999983
No 306
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.28 E-value=0.0002 Score=60.60 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.-.++|+|++|||||||+|.|.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999987
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.28 E-value=0.00012 Score=63.57 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++.+++|+|+||||||||.+.|.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999998
No 308
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.27 E-value=0.00012 Score=61.13 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt 240 (327)
.++|+|++|||||||+|.+.+ ..... ..+..+......+.+-.......++||
T Consensus 9 ki~~vG~~~vGKTsli~~l~~-------------------------~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt 61 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT-------------------------GSYQV--LEKTESEQYKKEMLVDGQTHLVLIREE 61 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH-------------------------SCCCC--CSSCSSSEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh-------------------------CCCCC--cCCCcceeEEEEEEECCEEEEEEEEEC
Q ss_pred cc
Q 020346 241 PG 242 (327)
Q Consensus 241 pg 242 (327)
||
T Consensus 62 ~G 63 (178)
T 2iwr_A 62 AG 63 (178)
T ss_dssp SS
T ss_pred CC
No 309
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.27 E-value=0.00024 Score=61.52 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCC------
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG------ 234 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~------ 234 (327)
.++|+|++|||||||+|.|.+ +..........+ .......+..+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~------------------------~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~~ 78 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD------------------------NKFNPKFITTVG----IDFREKRVVYNAQGPNGSS 78 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC------------------------SCCCCEEEEEEE----EEEEEEEEEEEC-------
T ss_pred EEEEECcCCCCHHHHHHHHhc------------------------CCCCcCCCCcee----EEEEEEEEEECCccccccc
Q ss_pred -------CeEEeCcc
Q 020346 235 -------GYLADTPG 242 (327)
Q Consensus 235 -------~~i~Dtpg 242 (327)
..++||||
T Consensus 79 ~~~~~~~l~l~Dt~G 93 (217)
T 2f7s_A 79 GKAFKVHLQLWDTAG 93 (217)
T ss_dssp CCEEEEEEEEEEEES
T ss_pred cCceeEEEEEEECCC
No 310
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.27 E-value=0.00031 Score=59.29 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHcCC
Q 020346 161 TTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.++|+|++|||||||+|.|.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999983
No 311
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.26 E-value=0.00016 Score=75.01 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.+-.++|+|++|+|||||+|+|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999954
No 312
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.26 E-value=0.00017 Score=60.74 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999983
No 313
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.23 E-value=0.00013 Score=63.26 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999983
No 314
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.23 E-value=0.00031 Score=59.40 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.-.++|+|++|||||||+|.|.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999997
No 315
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.22 E-value=0.00028 Score=60.94 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.-.++|+|++|||||||+|.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999986
No 316
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.22 E-value=0.00012 Score=62.41 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=5.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999984
No 317
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.22 E-value=0.00033 Score=59.91 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.-.++|+|++|||||||+|.|.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 455799999999999999999987
No 318
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.20 E-value=0.00038 Score=59.15 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47999999999999999999873
No 319
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.19 E-value=0.0003 Score=60.66 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
-.++|+|++|||||||+|.|.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 3699999999999999999987
No 320
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.17 E-value=8.4e-05 Score=63.81 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999984
No 321
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.17 E-value=0.00014 Score=69.11 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEcc--CCCeEEe
Q 020346 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGYLAD 239 (327)
Q Consensus 162 v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~--~~~~i~D 239 (327)
++|+|.+|||||||||.|.+.. ..+...+..+ ....++.+..+ ....++|
T Consensus 161 V~lvG~~nvGKSTLln~L~~~~-----------------------~~i~~~~ftT-----l~p~~g~v~~~~~~~~~l~D 212 (342)
T 1lnz_A 161 VGLVGFPSVGKSTLLSVVSSAK-----------------------PKIADYHFTT-----LVPNLGMVETDDGRSFVMAD 212 (342)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC-----------------------CEESSTTSSC-----CCCCEEEEECSSSCEEEEEE
T ss_pred eeeeCCCCCCHHHHHHHHHcCC-----------------------CccccCCccc-----cCceEEEEEeCCCceEEEec
Q ss_pred Cccc
Q 020346 240 TPGF 243 (327)
Q Consensus 240 tpg~ 243 (327)
+||+
T Consensus 213 tPG~ 216 (342)
T 1lnz_A 213 LPGL 216 (342)
T ss_dssp HHHH
T ss_pred CCCC
No 322
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.16 E-value=0.00029 Score=60.53 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.|.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999983
No 323
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00017 Score=67.78 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=34.1
Q ss_pred ccCcchhhHHHHHhhc-CCCE--EEEEcCCCCCHHHHHHHHcC
Q 020346 142 CSVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~~--v~lvG~sG~GKSTLln~L~g 181 (327)
..+++..+++.++..+ .|+. +.|.||||+||||++++|++
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456778889988887 6666 89999999999999999998
No 324
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.14 E-value=6e-05 Score=79.39 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.9
Q ss_pred hHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++++++.-+|++++|+||||+|||||+++|.|
T Consensus 597 vlndisl~~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 597 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp CCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeecccccCCCcEEEEECCCCCChHHHHHHHHH
Confidence 334444443689999999999999999999998
No 325
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.14 E-value=0.0002 Score=61.96 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|+|||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 326
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.13 E-value=4.7e-05 Score=75.77 Aligned_cols=24 Identities=46% Similarity=0.627 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
|-.++|+|++|||||||+|.|.+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCC
Confidence 468999999999999999999983
No 327
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.12 E-value=0.0015 Score=55.32 Aligned_cols=88 Identities=9% Similarity=0.093 Sum_probs=58.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHhc-----------CCCEEEEeecCCCCcHH---HHHHHHh--h
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST-----------GIPLTLALNKVELVDEE---VLNTWKS--R 131 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~-----------~~~~~ivlnK~Dl~~~~---~~~~~~~--~ 131 (327)
.+....+.++|.+++|+++..+. +...+..++...... +.|+++|.||+|+.+.. +...... .
T Consensus 78 ~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 156 (199)
T 4bas_A 78 GLWETYYDNIDAVIFVVDSSDHL-RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT 156 (199)
T ss_dssp GGGGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcHH-HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh
Confidence 33344578999999999998653 344555555544433 88999999999998652 2222111 1
Q ss_pred h-hhcCCceeeccCcchhhHHHHHhh
Q 020346 132 L-HTWGYEPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 132 ~-~~~~~~~~~~s~~~~~~l~~l~~~ 156 (327)
+ ...++..+.+|+.+..+++++-..
T Consensus 157 ~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (199)
T 4bas_A 157 LMGDHPFVIFASNGLKGTGVHEGFSW 182 (199)
T ss_dssp HHTTSCEEEEECBTTTTBTHHHHHHH
T ss_pred hccCCeeEEEEeeCCCccCHHHHHHH
Confidence 1 345667888999887777776544
No 328
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.11 E-value=0.0018 Score=54.28 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=58.2
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcH---HHHHHHHh--hhhhcCCc
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDE---EVLNTWKS--RLHTWGYE 138 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~---~~~~~~~~--~~~~~~~~ 138 (327)
.+.+..+.++|.+++|+++..+ .+...+..++..... .+.|+++|+||+|+.+. ++...... .+...++.
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 158 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH 158 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCT-TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE
Confidence 3344567899999999999875 345555555554442 57899999999999763 22222211 12234567
Q ss_pred eeeccCcchhhHHHHHhh
Q 020346 139 PLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~ 156 (327)
.+.+|+.+..+++++-..
T Consensus 159 ~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 159 IQACCALTGEGLCQGLEW 176 (181)
T ss_dssp EEECBTTTTBTHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHH
Confidence 788898888888776544
No 329
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.11 E-value=0.00037 Score=59.59 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999983
No 330
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.11 E-value=0.00031 Score=59.45 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=55.7
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s~~~ 146 (327)
..+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+.... .........++++.+.+|+.+
T Consensus 84 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 162 (196)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTT
T ss_pred HHHhhCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCC
Confidence 3468899999999987642 23344455443332 36789999999999754311 112233344677889999988
Q ss_pred hhhHHHHHhhc----CCCEEEEEcCCCCCHHH
Q 020346 147 KLGLDSLLQRL----RDQTTVIVGPSGVGKSS 174 (327)
Q Consensus 147 ~~~l~~l~~~l----~g~~v~lvG~sG~GKST 174 (327)
..+++.+-..+ ....----.++|++||+
T Consensus 163 g~gv~~l~~~l~~~i~~~~~~~~~~~~~~~s~ 194 (196)
T 3tkl_A 163 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSN 194 (196)
T ss_dssp CTTHHHHHHHHHHHHHHHC-------------
T ss_pred CCCHHHHHHHHHHHHHHHhccccccCCCccCC
Confidence 77777654443 11111122456777776
No 331
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.10 E-value=0.00028 Score=65.73 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
..++|+|.+|||||||+|.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999883
No 332
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.10 E-value=0.00055 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999983
No 333
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.00054 Score=58.12 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999973
No 334
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=97.08 E-value=0.001 Score=55.37 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=52.3
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceecccCCceEEeeecccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~ 66 (327)
|-|.|++.-++..+-....+|..+.|.++|++++ ...+..||+|.+++.+.+...|.|...+.+.
T Consensus 33 ~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~d 97 (143)
T 1d7q_A 33 EYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNAD 97 (143)
T ss_dssp EEEEEEEECSSSEEEEEETTTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTT
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEeccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCHH
Confidence 4688999997666444446899999999999997 8899999999999877666678777776543
No 335
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.07 E-value=0.00057 Score=58.89 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 336
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=97.07 E-value=0.00035 Score=54.99 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=51.8
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceeccc-CCceEEeeecccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV-DRRGMIENVFQRS 66 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~-~~~~~i~~i~~R~ 66 (327)
|-|.|++.-++..+-....+|..+.|.++|++++ ...+..||.|.+++.+.+ ..+|.|...+.+.
T Consensus 22 ~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~d 87 (102)
T 1jt8_A 22 ILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYTKT 87 (102)
T ss_dssp EEEEEECSSCSSEEEEEEETTEEEEEECCHHHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEccccee-eEEecCCCEEEEEeccCCCCceEEEEEEeCHH
Confidence 4588999997666444446899999999999987 788999999999988766 5578787776543
No 337
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00097 Score=55.38 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=55.6
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+....+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.++.. ..........++++.+.+|
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETS 154 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445678999999999987642 33345555544443 5789999999999975321 1112222334567888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++.+-..
T Consensus 155 a~~~~gi~~l~~~ 167 (180)
T 2g6b_A 155 AKTGLNVDLAFTA 167 (180)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8887777766443
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.03 E-value=0.00023 Score=60.69 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+|++||||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999987
No 339
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.02 E-value=0.00025 Score=69.06 Aligned_cols=24 Identities=38% Similarity=0.713 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+||||+|||||+++|.+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999999987
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.02 E-value=0.00024 Score=61.27 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
+++|+|+|||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 341
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.01 E-value=0.0028 Score=53.31 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=57.1
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcH---HHHHHHHhh--hhhcCCceee
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDE---EVLNTWKSR--LHTWGYEPLF 141 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~---~~~~~~~~~--~~~~~~~~~~ 141 (327)
+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+. ++....... +...+++.+.
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 156 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRE-RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 156 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTT-THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred HHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEE
Confidence 34568999999999998753 45556666655543 57899999999999753 222222211 2345667788
Q ss_pred ccCcchhhHHHHHhh
Q 020346 142 CSVESKLGLDSLLQR 156 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (327)
+|+.++.+++++-..
T Consensus 157 ~Sa~~g~gi~~l~~~ 171 (187)
T 1zj6_A 157 CCALTGEGLCQGLEW 171 (187)
T ss_dssp CBTTTTBTHHHHHHH
T ss_pred ccCCCCcCHHHHHHH
Confidence 888887777766544
No 342
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.00 E-value=0.00029 Score=62.99 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=23.4
Q ss_pred HHHHHhhc----CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 150 LDSLLQRL----RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 150 l~~l~~~l----~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+.++.+ +|..++|.|++||||||+++.|..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 44555554 689999999999999999999998
No 343
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.99 E-value=0.00075 Score=58.81 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|.+|||||||+|.|.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999873
No 344
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.99 E-value=0.0017 Score=51.91 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=51.1
Q ss_pred CeeEEEecCCCCceeccCCCCcEEEEEEcccccccCCCcccCcEEEEceeccc-CCceEEeeecccc
Q 020346 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV-DRRGMIENVFQRS 66 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~-~~~~~i~~i~~R~ 66 (327)
|-|.|++.-++..+-....+|..+.|.++|++++ ...+..||.|.+++.+.+ ...|.|...+...
T Consensus 17 ~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 17 QIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp EEEEEEECCSSSEEEEECTTSCEEEEECCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred EEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 4588999997666555556899999999999996 788999999999987654 4467777766543
No 345
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.99 E-value=0.0052 Score=50.29 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=56.8
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHH---HHHHHH--hhhhhcCCce
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE---VLNTWK--SRLHTWGYEP 139 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~---~~~~~~--~~~~~~~~~~ 139 (327)
+.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+.. +..... ..+...+++.
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRD-RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQI 145 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCT-THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEE
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEE
Confidence 3444578999999999998753 44455555544432 478999999999997642 222111 1223345677
Q ss_pred eeccCcchhhHHHHHhh
Q 020346 140 LFCSVESKLGLDSLLQR 156 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~ 156 (327)
+.+|+.+..+++++-..
T Consensus 146 ~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 146 FKTSATKGTGLDEAMEW 162 (171)
T ss_dssp EECCTTTCTTHHHHHHH
T ss_pred EECcCCCCcCHHHHHHH
Confidence 88888887777766443
No 346
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.96 E-value=0.00031 Score=64.13 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|++++|+|+||+|||||++.|++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 899999999999999999999997
No 347
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.96 E-value=0.0013 Score=55.49 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=57.6
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQE-SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEAS 165 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hHHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 3445678999999999987642 33345555544443 3789999999999976421 1122233344678889999
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 166 a~~g~gi~~l~~~ 178 (189)
T 2gf9_A 166 AKENINVKQVFER 178 (189)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9888777766544
No 348
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.94 E-value=0.0004 Score=57.70 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 349
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.92 E-value=0.00036 Score=60.70 Aligned_cols=21 Identities=52% Similarity=0.817 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
-++|+||||||||||++.|+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999975
No 350
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.91 E-value=0.00046 Score=67.97 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++|+|+.++|||||||.|+|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhh
Confidence 4689999999999999999997
No 351
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.91 E-value=0.00046 Score=58.01 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..+.|+|+|||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 352
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.91 E-value=0.00018 Score=67.14 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=36.5
Q ss_pred HhhcCCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeec
Q 020346 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (327)
Q Consensus 154 ~~~l~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~ 210 (327)
++..++.+++++|++|+||||+++.|++ ++.+..|++.+-+.++.
T Consensus 93 ~~~~~~~vi~i~G~~G~GKTT~~~~la~------------~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 93 IPDKIPYVIMLVGVQGTGKTTTAGKLAY------------FYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SCSSSSEEEEEECSSCSSTTHHHHHHHH------------HHHHTTCCEEEEECCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH------------HHHHCCCeEEEEecCCC
Confidence 3334578999999999999999999998 77777788887766643
No 353
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.90 E-value=0.00037 Score=59.02 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|+|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 354
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.90 E-value=0.00026 Score=69.34 Aligned_cols=61 Identities=36% Similarity=0.418 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt 240 (327)
.++|+|++|+|||||+|.|.+ ......+...+.........-.+.......++||
T Consensus 36 kI~IvG~~~vGKSTLin~L~~-------------------------~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDT 90 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVG-------------------------QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDT 90 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC--------------------------------------CCCCEEEEEETTTEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHc-------------------------CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEEC
Q ss_pred cccCCc
Q 020346 241 PGFNQP 246 (327)
Q Consensus 241 pg~~~~ 246 (327)
||+..+
T Consensus 91 pG~~d~ 96 (423)
T 3qq5_A 91 PGLDDV 96 (423)
T ss_dssp SSTTCC
T ss_pred cCCCcc
No 355
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.90 E-value=0.0024 Score=54.92 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=54.8
Q ss_pred ccccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHh--cCCCEEEEeecCCCCcHHHH----------HHHHhh
Q 020346 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL----------NTWKSR 131 (327)
Q Consensus 65 R~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~----------~~~~~~ 131 (327)
+...+.+..+.++|.+++|+++..|. +...+. .++..... .+.|+++|.||+|+.++... ......
T Consensus 69 ~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~ 147 (212)
T 2j0v_A 69 DYSRLRPLSYRGADIFVLAFSLISKA-SYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL 147 (212)
T ss_dssp CCCC--CGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH
Confidence 33344445678999999999987643 222332 44444433 37899999999999654321 111222
Q ss_pred hhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 132 LHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 132 ~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
...+++ +.+.+|+.+..+++++-..
T Consensus 148 ~~~~~~~~~~~~Sa~~g~gi~~l~~~ 173 (212)
T 2j0v_A 148 RKQIGAAAYIECSSKTQQNVKAVFDT 173 (212)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHcCCceEEEccCCCCCCHHHHHHH
Confidence 334554 6777888777776665443
No 356
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.90 E-value=0.00068 Score=58.15 Aligned_cols=85 Identities=9% Similarity=0.124 Sum_probs=53.0
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|+.
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 164 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 334578999999999987642 23344555544432 3678999999999953211 111122233457788889988
Q ss_pred chhhHHHHHh
Q 020346 146 SKLGLDSLLQ 155 (327)
Q Consensus 146 ~~~~l~~l~~ 155 (327)
+..+++.+..
T Consensus 165 ~~~gi~~l~~ 174 (213)
T 3cph_A 165 NDDNVNEIFF 174 (213)
T ss_dssp TTBSSHHHHH
T ss_pred CCCCHHHHHH
Confidence 7766655443
No 357
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.89 E-value=0.0037 Score=56.21 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=54.8
Q ss_pred cccEEEEEeecCCC-CCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHHHHHHhhhhh-cCCceeeccCcchhh
Q 020346 76 NVDHLLLLFSMDQP-KLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLG 149 (327)
Q Consensus 76 nvD~lliv~~~~~p-~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 149 (327)
++|.+++|+++..+ ..+...+.+++.... ..+.|+++|.||+|+.+............. .++..+.+|+.+..+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 79999999999765 245556666655443 247899999999999776544332222223 367788899988877
Q ss_pred HHHHHhh
Q 020346 150 LDSLLQR 156 (327)
Q Consensus 150 l~~l~~~ 156 (327)
++++-..
T Consensus 242 v~elf~~ 248 (255)
T 3c5h_A 242 VDLAFST 248 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776443
No 358
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.89 E-value=0.0048 Score=51.86 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=56.0
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHH---HHHHHHh--hhhhcCCce
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE---VLNTWKS--RLHTWGYEP 139 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~---~~~~~~~--~~~~~~~~~ 139 (327)
+.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+.. +...... .....+++.
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRD-RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCT-THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE
Confidence 3344578999999999998753 44455555544433 378999999999997642 2222111 122345567
Q ss_pred eeccCcchhhHHHHHhh
Q 020346 140 LFCSVESKLGLDSLLQR 156 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~ 156 (327)
+.+|+.+..+++++-..
T Consensus 161 ~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp EECCTTTCTTHHHHHHH
T ss_pred EEccCCCccCHHHHHHH
Confidence 88888887777766443
No 359
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.89 E-value=0.00044 Score=59.42 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.|.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
No 360
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.89 E-value=0.0005 Score=58.12 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999976
No 361
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.88 E-value=0.00046 Score=57.52 Aligned_cols=24 Identities=38% Similarity=0.754 Sum_probs=20.8
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
+.....+|+||||+|||||+.+|.
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 345588999999999999999976
No 362
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.87 E-value=0.0004 Score=59.74 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..++|+|+||||||||++.|.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999998
No 363
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.87 E-value=0.00053 Score=58.58 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=23.3
Q ss_pred HHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 153 l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+++.. ++..++|+|++||||||+.+.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34443 678999999999999999999976
No 364
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.86 E-value=0.00048 Score=59.47 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...++|+|+|||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 365
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.004 Score=52.55 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=55.8
Q ss_pred ccccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHhc--CCCEEEEeecCCCCcHHHH--------------HH
Q 020346 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAEST--GIPLTLALNKVELVDEEVL--------------NT 127 (327)
Q Consensus 65 R~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~~--~~~~~ivlnK~Dl~~~~~~--------------~~ 127 (327)
+...+.+..+.++|.+++|+++..|. +...+. .++...... +.|+++|.||+|+.+.... ..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPA-SFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 33344455678999999999987642 222333 444444433 7899999999999764311 11
Q ss_pred HHhhhhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
.......+++ ..+.+|+.+..+++.+-..
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 186 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDE 186 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHH
Confidence 1122233455 6777888777777765443
No 366
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.85 E-value=0.0026 Score=53.69 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=56.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh------cCCCEEEEeecCCCCcHH---HHHHHH--hhhhhcC
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEE---VLNTWK--SRLHTWG 136 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~------~~~~~~ivlnK~Dl~~~~---~~~~~~--~~~~~~~ 136 (327)
.+.+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+.. +..... ..+...+
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRL-RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSC
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCc
Confidence 33445678999999999987642 23344444444332 478999999999997542 222222 1122345
Q ss_pred CceeeccCcchhhHHHHHhh
Q 020346 137 YEPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~ 156 (327)
+..+.+|+.+..+++++-..
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~ 180 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDW 180 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHH
Confidence 67888998888777776544
No 367
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.85 E-value=0.0004 Score=59.52 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|.+|||||||+|.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 368
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.85 E-value=0.0023 Score=53.67 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=55.7
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHHHHHHhhh-----hhcCCcee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPL 140 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 140 (327)
.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+..........+ ...+++.+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQ-RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQ 157 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEE
Confidence 344578999999999987653 34445555544432 478999999999997643222222222 23456778
Q ss_pred eccCcchhhHHHHHhh
Q 020346 141 FCSVESKLGLDSLLQR 156 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~ 156 (327)
.+|+.+..+++++-..
T Consensus 158 ~~Sa~~~~gi~~l~~~ 173 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDW 173 (186)
T ss_dssp ECCTTTCTTHHHHHHH
T ss_pred EeeCCCCCCHHHHHHH
Confidence 8888887777766544
No 369
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.85 E-value=0.00015 Score=69.50 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=32.2
Q ss_pred hcCccccccccccccccc---------cCCceEEcccH------HHHHHHHHHHHHH
Q 020346 266 MLKANEPAKCSFNNCLHL---------GEPGCVVKGDW------ERYQYYFQLLDEI 307 (327)
Q Consensus 266 ~LSgGq~q~~~~~~~~h~---------~ep~~~v~~~~------~r~~~~~~ll~e~ 307 (327)
.||+||+|++.++.++ + ++|.++++||| .+.+.+.+++.++
T Consensus 265 ~lS~Gqqq~l~lA~~L-a~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~ 320 (359)
T 2o5v_A 265 YASRGEGRTVALALRR-AELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV 320 (359)
T ss_dssp HCCHHHHHHHHHHHHH-HHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS
T ss_pred hCCHHHHHHHHHHHHH-HHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc
Confidence 4899999999999887 6 89999999855 4666666666554
No 370
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.85 E-value=0.0015 Score=54.62 Aligned_cols=87 Identities=10% Similarity=0.156 Sum_probs=52.2
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.+... ..........++++.+.+|
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 3445578999999999987653 34455556554443 3679999999999975321 1112223344577888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 152 a~~~~~i~~l~~~ 164 (183)
T 2fu5_C 152 AKANINVENAFFT 164 (183)
T ss_dssp C---CCHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8877777665443
No 371
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.84 E-value=0.00049 Score=62.78 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
.-.++|+|.+|||||||+|.|.|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999954
No 372
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.84 E-value=0.00042 Score=61.01 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=24.7
Q ss_pred hHHHHH-hhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 149 GLDSLL-QRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 149 ~l~~l~-~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.|+.+. --+ +|+.++|+|+||+|||||+..++.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455552 223 899999999999999999665544
No 373
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.83 E-value=0.00057 Score=56.45 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 020346 160 QTTVIVGPSGVGKSSLINAL 179 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L 179 (327)
..++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 374
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.00097 Score=62.70 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCeEEeC
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~i~Dt 240 (327)
.++|+|.+|||||||+|.|.+ +.-+...+.. ......+-.......++||
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~------------------------~~~~~~~pT~------~~~~~~~~~~~~~l~i~Dt 216 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL------------------------GEIVTTIPTI------GFNVETVEYKNISFTVWDV 216 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS------------------------SCCEEEEEET------TEEEEEEEETTEEEEEEEC
T ss_pred eEEEECCCCccHHHHHHHHhC------------------------CCCCCccccc------ceEEEEEecCcEEEEEEEC
Q ss_pred cc
Q 020346 241 PG 242 (327)
Q Consensus 241 pg 242 (327)
||
T Consensus 217 ~G 218 (329)
T 3o47_A 217 GG 218 (329)
T ss_dssp C-
T ss_pred CC
No 375
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.82 E-value=0.00038 Score=67.48 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=25.9
Q ss_pred HHHhhc-CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
|+.+.+ +|++++|+|+||+|||||++.|.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 444444 899999999999999999999987
No 376
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.0018 Score=55.03 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=57.8
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
...+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... .+........++++.+.+|+.
T Consensus 90 ~~~~~~~d~iilV~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQD-SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAK 168 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTT
T ss_pred HHhhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 34568999999999987653 34455555554443 3678999999999975321 122233344567788899988
Q ss_pred chhhHHHHHhhc
Q 020346 146 SKLGLDSLLQRL 157 (327)
Q Consensus 146 ~~~~l~~l~~~l 157 (327)
+..+++++...+
T Consensus 169 ~~~gi~~l~~~l 180 (192)
T 2fg5_A 169 NAINIEELFQGI 180 (192)
T ss_dssp TTBSHHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 887777765543
No 377
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.80 E-value=0.002 Score=53.46 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=56.6
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHhc---CCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST---GIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~---~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
.+..+.++|.+++|+++..+. +...+..++...... +.|+++|+||+|+.+... ...........+++.+.+|+
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQA-SFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA 156 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCS
T ss_pred hHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 334568899999999987642 334455555544432 678999999999965321 12222333446778888998
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++.+-..
T Consensus 157 ~~g~gi~~l~~~ 168 (181)
T 2efe_B 157 KTATNVKEIFYE 168 (181)
T ss_dssp SSCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 887777776544
No 378
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.78 E-value=0.0018 Score=53.12 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=55.9
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+.+....++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.++.. ..........++++.+.+|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDED-SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 149 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred hHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 3344567999999999987642 3344555544333 35788999999999976321 1122233344677888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 150 a~~~~gi~~l~~~ 162 (170)
T 1z08_A 150 AKQNKGIEELFLD 162 (170)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8888777776543
No 379
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.77 E-value=0.00087 Score=56.36 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=56.0
Q ss_pred ccccccccEEEEEeecCCCCC-----ChHHHHHHHHHH--HhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeec
Q 020346 71 DPPVANVDHLLLLFSMDQPKL-----EPFALTRFLVEA--ESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFC 142 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~-----~~~~l~r~L~~a--~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~ 142 (327)
+..+.++|.+++|+++..|.. +...+.+++... ...+.|+++|.||+|+.+....+........+++ ..+.+
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEA 171 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEEC
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEE
Confidence 345789999999999874311 122334444332 1257899999999999764333333344555677 88899
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++++-..
T Consensus 172 Sa~~~~gv~~l~~~ 185 (198)
T 3t1o_A 172 VATEGKGVFETLKE 185 (198)
T ss_dssp BGGGTBTHHHHHHH
T ss_pred ecCCCcCHHHHHHH
Confidence 99888777766543
No 380
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.77 E-value=0.0017 Score=54.35 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=55.6
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
....+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+... ...........+++.+.+|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQ-SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 344578999999999987642 33334455444332 5789999999999975321 1122223334567888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++.+-..
T Consensus 166 a~~~~~v~~l~~~ 178 (195)
T 3bc1_A 166 AANGTNISHAIEM 178 (195)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8887777665443
No 381
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.76 E-value=0.0026 Score=51.97 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=52.2
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+....++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.++.. ..........++.+.+.+|+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKG-SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 145 (166)
T ss_dssp ------CCEEEEEEETTCHH-HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBG
T ss_pred hhhhhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEecc
Confidence 34568999999999998653 34455555544433 4789999999999975421 11112233445678888999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++++-..
T Consensus 146 ~~~~gi~~l~~~ 157 (166)
T 3q72_A 146 ALHHNVQALFEG 157 (166)
T ss_dssp GGTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888877776543
No 382
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.76 E-value=0.0012 Score=54.45 Aligned_cols=86 Identities=9% Similarity=0.199 Sum_probs=55.8
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
....+.++|.+++|+++..|. +...+..++.... ..+.|+++|+||+|+.++.. ...........+++.+.+|+
T Consensus 80 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (179)
T 2y8e_A 80 IPSYIRDSTVAVVVYDITNTN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 158 (179)
T ss_dssp SHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred HHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeC
Confidence 334578999999999987642 2334444443332 24778999999999975421 12222333445778888998
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++.+-..
T Consensus 159 ~~~~~i~~l~~~ 170 (179)
T 2y8e_A 159 KAGYNVKQLFRR 170 (179)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 887777766544
No 383
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.76 E-value=0.0028 Score=52.39 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=56.4
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh--cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~--~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
....+.++|.+++|+++..| .+...+..++..... ...|+++|+||+|+.+... ..........++++.+.+|+.
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSA-ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 153 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECC
Confidence 34457899999999998764 233445555544443 3578899999999875431 112223334457788899998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+-..
T Consensus 154 ~~~gi~~l~~~ 164 (181)
T 3tw8_B 154 ENVNVEEMFNC 164 (181)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88777766443
No 384
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.72 E-value=0.00056 Score=66.95 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeecc
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~ 211 (327)
++++++|+|++|+||||++..|++ ++.+..|+|.+.+.++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~------------~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL------------YYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH------------HHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCeEEEeeccccC
Confidence 688999999999999999999999 888888898887766543
No 385
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.71 E-value=0.00075 Score=57.23 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..+.|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
No 386
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.71 E-value=0.0016 Score=53.21 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=55.7
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH--hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~--~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
.+....++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.++.. ..........++++.+.+|+.
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRE-SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVK 149 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecC
Confidence 334567999999999987642 2333444443332 24789999999999976321 122223334567888899988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+...
T Consensus 150 ~~~~i~~l~~~ 160 (168)
T 1z2a_A 150 EDLNVSEVFKY 160 (168)
T ss_dssp TTBSSHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766443
No 387
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.70 E-value=0.00061 Score=57.32 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|++|||||||+|.|.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999983
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.00085 Score=57.52 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999999999999987
No 389
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.70 E-value=0.0014 Score=54.10 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=56.0
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..+ .+...+..++..... .+.|+++|+||+|+.++.. .+........++++.+.+|+.
T Consensus 82 ~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRR-STYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160 (179)
T ss_dssp HHHHHTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhccCCEEEEEEeCcCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 3456899999999998764 233344555443332 5678999999999965321 122233344567788899998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 161 ~~~gi~~l~~~ 171 (179)
T 1z0f_A 161 TGENVEDAFLE 171 (179)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88777766443
No 390
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.70 E-value=0.0056 Score=51.94 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=53.8
Q ss_pred ccccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHH--hcCCCEEEEeecCCCCcHHHH--------------HH
Q 020346 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAE--STGIPLTLALNKVELVDEEVL--------------NT 127 (327)
Q Consensus 65 R~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~--~~~~~~~ivlnK~Dl~~~~~~--------------~~ 127 (327)
+...+.+..+.++|.+++|+++..+. +...+. .++.... ..+.|+++|.||+|+.+.... ..
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPS-SFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 33444455678999999999987642 222332 3433333 237899999999999753211 11
Q ss_pred HHhhhhhcCC-ceeeccCcchhhHHHHHh
Q 020346 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~ 155 (327)
.......+++ ..+.+|+.+..+++.+-.
T Consensus 159 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 159 AKLLAEEIKAASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp HHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHhcCCcEEEEEecCCCCCHHHHHH
Confidence 1112223455 667778777776666543
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.69 E-value=0.0017 Score=53.09 Aligned_cols=85 Identities=9% Similarity=0.146 Sum_probs=55.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+....++|.+++|+++..|. +...+..++..... ...|+++|.||+|+.++.. ...........+++.+.+|+.
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEE-SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 34568999999999987642 34455555544443 3567888899999965321 112223334467788889998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+-..
T Consensus 152 ~g~gi~~l~~~ 162 (170)
T 1r2q_A 152 TSMNVNEIFMA 162 (170)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88877776544
No 392
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.68 E-value=0.0031 Score=51.43 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=54.8
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHHHHHHhh-----hhhcCCceee
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYEPLF 141 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~ 141 (327)
+..+.++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.+......+... +...+++.+.
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRE-RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 140 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEE
Confidence 33578999999999997652 34445555544433 37899999999999764211222121 2223556788
Q ss_pred ccCcchhhHHHHHhh
Q 020346 142 CSVESKLGLDSLLQR 156 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (327)
+|+.+..+++++-..
T Consensus 141 ~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 141 TCATSGDGLYEGLDW 155 (164)
T ss_dssp CBTTTTBTHHHHHHH
T ss_pred cccCCCcCHHHHHHH
Confidence 888888777776544
No 393
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.68 E-value=0.0033 Score=51.69 Aligned_cols=84 Identities=10% Similarity=0.134 Sum_probs=53.8
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
...+++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... ..........++++.+.+|+.
T Consensus 73 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 151 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRG-SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSAT 151 (175)
T ss_dssp HTTTSCSEEEEEEETTCHH-HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTT
T ss_pred hhcccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecC
Confidence 3457899999999987642 33445555544433 3789999999999975421 111112233456788899998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++++-..
T Consensus 152 ~g~gi~~l~~~ 162 (175)
T 2nzj_A 152 LQHNVAELFEG 162 (175)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88877776544
No 394
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.67 E-value=0.00087 Score=57.22 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 395
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.67 E-value=0.0044 Score=51.50 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=55.2
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHHHHHHhhh-----hhcCCcee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPL 140 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 140 (327)
.+..+.++|.+++|+++..+ .+...+..++.... ..+.|+++|+||+|+.+......+...+ ...+++.+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 157 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIV 157 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEE
T ss_pred HHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 34457899999999998765 34455555554443 3578999999999997542222222221 22345678
Q ss_pred eccCcchhhHHHHHhh
Q 020346 141 FCSVESKLGLDSLLQR 156 (327)
Q Consensus 141 ~~s~~~~~~l~~l~~~ 156 (327)
.+|+.+..+++++-..
T Consensus 158 ~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 158 ASSAIKGEGITEGLDW 173 (183)
T ss_dssp EEBGGGTBTHHHHHHH
T ss_pred EccCCCCcCHHHHHHH
Confidence 8888887777766443
No 396
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.65 E-value=0.0022 Score=54.68 Aligned_cols=87 Identities=15% Similarity=0.236 Sum_probs=56.5
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hHHHhhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 3445678999999999987642 33345555544443 4789999999999975321 1112223344577888889
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++.+-..
T Consensus 152 a~~~~gi~~l~~~ 164 (203)
T 1zbd_A 152 AKDNINVKQTFER 164 (203)
T ss_dssp TTTTBSSHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8877776665443
No 397
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.65 E-value=0.0018 Score=52.90 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=55.0
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 147 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECC
Confidence 334568999999999987643 33345555544433 3778999999999943211 111222234457788889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 148 ~~~gv~~l~~~ 158 (170)
T 1g16_A 148 NDDNVNEIFFT 158 (170)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766443
No 398
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.63 E-value=0.00092 Score=58.82 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
-.++|+|.+|||||||+|.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999973
No 399
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.63 E-value=0.0042 Score=53.06 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=57.4
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeec
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (327)
.+....+.++|.+++|+++..|. +...+..++..... ...|+++|+||+|+.+... ...........+++.+.+
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLET 150 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHhccCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 33445678999999999987643 33445555544432 4578999999999975321 111122233467788888
Q ss_pred cCcchhhHHHHHhhc
Q 020346 143 SVESKLGLDSLLQRL 157 (327)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (327)
|+.+..+++.+-..+
T Consensus 151 Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 151 SALDSTNVEDAFLTM 165 (206)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 988877777665543
No 400
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.63 E-value=0.00092 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.62 E-value=0.00076 Score=56.14 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|||||||+|.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999873
No 402
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.62 E-value=0.00093 Score=55.83 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+.|+|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 403
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.61 E-value=0.0026 Score=54.49 Aligned_cols=89 Identities=20% Similarity=0.322 Sum_probs=54.5
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHH-HHHHHHHHh--cCCCEEEEeecCCCCcHHHHHH--------------HH
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLNT--------------WK 129 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l-~r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~~~--------------~~ 129 (327)
..+.+..+.++|.+++|+++..+. +...+ ..++..+.. .+.|+++|+||+|+.+...... ..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 334444678999999999987642 23333 334433333 3789999999999976532211 11
Q ss_pred hhhhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 130 SRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
.....+++ ..+.+|+.+..+++++-..
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 193 (201)
T 2gco_A 166 DMANRISAFGYLECSAKTKEGVREVFEM 193 (201)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHhCCCcEEEEeeCCCCCCHHHHHHH
Confidence 12233455 6677888777777666443
No 404
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.60 E-value=0.0021 Score=54.41 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=55.4
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ...........++..+.+|+.
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRE-TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 34578999999999987642 33345555544443 3778999999999965321 111222334457788888988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 167 ~~~gi~~l~~~ 177 (191)
T 2a5j_A 167 TACNVEEAFIN 177 (191)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766443
No 405
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.60 E-value=0.0011 Score=56.12 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++|+|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
No 406
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.60 E-value=0.0011 Score=57.22 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999975
No 407
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.58 E-value=0.011 Score=48.80 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=53.5
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcH--HHHHHHHhhhh----hcC--Cceee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLH----TWG--YEPLF 141 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~--~~~~~~~~~~~----~~~--~~~~~ 141 (327)
....+.++|.+++|+++..+.. ...+ ..+......+.|+++|+||+|+.+. +.......... .++ ++.+.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~-~~~~-~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVM-PQTV-EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCC-HHHH-HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HHHHHhhCCEEEEEEECCCCCc-HHHH-HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 3445788999999999876532 2222 3344445568899999999999763 22222222221 122 46788
Q ss_pred ccCcchhhHHHHHhh
Q 020346 142 CSVESKLGLDSLLQR 156 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (327)
+|+.+..+++.+-..
T Consensus 150 ~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEM 164 (178)
T ss_dssp CCSSSSHHHHHHHHH
T ss_pred EecCCCCCHHHHHHH
Confidence 888888777766443
No 408
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.58 E-value=0.0033 Score=53.56 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=54.5
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHHHHHHhh-----hhhcCCceeec
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYEPLFC 142 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~ 142 (327)
..+.++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.+......+... ....+++.+.+
T Consensus 92 ~~~~~~d~iilv~D~~~~~-s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 170 (192)
T 2b6h_A 92 HYFQNTQGLIFVVDSNDRE-RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 170 (192)
T ss_dssp HHHHTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEEC
T ss_pred HHhccCCEEEEEEECCCHH-HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEC
Confidence 3568999999999997653 34455555544433 37899999999999764222222221 12234567888
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++++-..
T Consensus 171 SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 171 CATQGTGLYDGLDW 184 (192)
T ss_dssp BTTTTBTHHHHHHH
T ss_pred cCCCcCCHHHHHHH
Confidence 88887777776543
No 409
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.58 E-value=0.00062 Score=65.39 Aligned_cols=21 Identities=52% Similarity=0.659 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|||+||||||||+|+|.+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999998
No 410
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.57 E-value=0.0087 Score=57.61 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=54.4
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHhcC-CCEEEEeecCCCCcHHHHHHHHhhh----hhc---CCceeeccC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTG-IPLTLALNKVELVDEEVLNTWKSRL----HTW---GYEPLFCSV 144 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~-~~~~ivlnK~Dl~~~~~~~~~~~~~----~~~---~~~~~~~s~ 144 (327)
.++++|.+++|+++..+.. .......+..+...+ +|+++|+||+|+.+.+........+ ... +++.+.+|+
T Consensus 95 ~~~~~D~~ilVvda~~~~~-~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 95 GAALMDGAILVVAANEPFP-QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 173 (403)
T ss_dssp HHTTCSEEEEEEETTSCSS-CHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred HHhhCCEEEEEEECCCCCC-cHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEEC
Confidence 4689999999999987542 334444555555444 4889999999998876443322222 222 456788898
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++.+...
T Consensus 174 ~~g~gi~~L~~~ 185 (403)
T 3sjy_A 174 LHKINIDSLIEG 185 (403)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCcChHHHHHH
Confidence 877776665443
No 411
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.56 E-value=0.0018 Score=52.64 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=55.2
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+....++|.+++|+++..|. +...+..++.... ..+.|+++|+||+|+.+..+ ..........++++.+.+|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1u8z_A 70 DNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA 148 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred HHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 34567999999999987643 2333444433332 23789999999999975421 12223334456778889999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++++-..
T Consensus 149 ~~~~gi~~l~~~ 160 (168)
T 1u8z_A 149 KTRANVDKVFFD 160 (168)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888777776543
No 412
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.56 E-value=0.0012 Score=56.12 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..++|+|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999975
No 413
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.56 E-value=0.0011 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..+.|+|+|||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999984
No 414
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.56 E-value=0.004 Score=52.28 Aligned_cols=86 Identities=15% Similarity=0.253 Sum_probs=53.4
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~ 144 (327)
....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|.
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 164 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNSK-SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSA 164 (190)
T ss_dssp ----CTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHhhCcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeC
Confidence 344567999999999987643 33345544433332 3789999999999875211 11222233445778888998
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++++-..
T Consensus 165 ~~~~gi~~l~~~ 176 (190)
T 3con_A 165 KTRQGVEDAFYT 176 (190)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 887777766443
No 415
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.55 E-value=0.0024 Score=53.07 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=56.1
Q ss_pred cccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHh--cCCCEEEEeecCCCCcHHHH------------HHHHh
Q 020346 66 STEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL------------NTWKS 130 (327)
Q Consensus 66 ~~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~------------~~~~~ 130 (327)
...+.+..+.++|.+++|+++..|. +...+. .++..... .+.|+++|.||+|+.+.... .....
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~ 147 (182)
T 3bwd_D 69 YNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE 147 (182)
T ss_dssp TTTTGGGGGTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH
T ss_pred hhhhHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH
Confidence 3344455678999999999987642 223333 34433332 37899999999999654321 11122
Q ss_pred hhhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 131 RLHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 131 ~~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
....+++ +.+.+|+.+..+++.+-..
T Consensus 148 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (182)
T 3bwd_D 148 LKKLIGAPAYIECSSKSQENVKGVFDA 174 (182)
T ss_dssp HHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHcCCCEEEEEECCCCCCHHHHHHH
Confidence 2234565 7788888888777766543
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.55 E-value=0.0011 Score=55.92 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 417
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.55 E-value=0.0012 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|..++|.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999984
No 418
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.55 E-value=0.0021 Score=59.09 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCCe--EE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY--LA 238 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~~--i~ 238 (327)
.++|+|.+|||||||+|.+.+ +.-........+ ......+........ ++
T Consensus 157 ~i~i~G~~~~GKssli~~~~~------------------------~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~l~ 208 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTT------------------------NAFPGEYIPTVF----DNYSANVMVDGKPVNLGLW 208 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHH------------------------SCCCCSCCCCSE----EEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCChHHHHHHHHh------------------------CCCCcccCCccc----ceeEEEEEECCEEEEEEEE
Q ss_pred eCcccCCc
Q 020346 239 DTPGFNQP 246 (327)
Q Consensus 239 Dtpg~~~~ 246 (327)
||||....
T Consensus 209 Dt~G~~~~ 216 (332)
T 2wkq_A 209 DTAGLEDY 216 (332)
T ss_dssp EECCCGGG
T ss_pred eCCCchhh
No 419
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.54 E-value=0.00051 Score=59.42 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 420
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.52 E-value=0.0021 Score=53.44 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=55.4
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+..+.++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.+... ..........++++.+.+|+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 162 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 34568999999999987642 2233433333222 23789999999999975421 22233344556788889999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++++-..
T Consensus 163 ~~~~gi~~l~~~ 174 (187)
T 2a9k_A 163 KTRANVDKVFFD 174 (187)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888777766544
No 421
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.52 E-value=0.0056 Score=52.20 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=57.6
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceee
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLF 141 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 141 (327)
.+....+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+.... .........+++..+.
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLH-SFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHH-HHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence 33445678999999999987642 33345555444432 36799999999999754311 1112233446778889
Q ss_pred ccCcchhhHHHHHhhc
Q 020346 142 CSVESKLGLDSLLQRL 157 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (327)
+|+.+..+++++-..+
T Consensus 166 ~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 166 SSARENQLTQGIFTKV 181 (201)
T ss_dssp CCTTCHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9998888777765443
No 422
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.52 E-value=0.0041 Score=50.77 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=56.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeec
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (327)
.+....+.++|.+++|+++..|. +...+..++..... ...|+++|.||+|+.+..+ ...........+++.+.+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEE-TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred cccHhhCcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence 33344568999999999987643 33344555444432 3567888999999976421 111122234467788899
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++.+-..
T Consensus 149 Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 149 SAKNAININELFIE 162 (170)
T ss_dssp BTTTTBSHHHHHHH
T ss_pred eCCCCcCHHHHHHH
Confidence 99888877776544
No 423
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.00098 Score=57.87 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
-..++|+|++|||||||+|.|++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 424
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.50 E-value=0.0018 Score=63.43 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccC------------------------
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS------------------------ 216 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~------------------------ 216 (327)
.++++|.+|+|||||+|.|++ ....+....
T Consensus 19 ~i~iiG~~d~GKSTL~~~Ll~--------------------------~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~ 72 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQIMY--------------------------LTGMVDKRTLEKYEREAKEKNRETWYLSWALDT 72 (439)
T ss_pred EEEEEeCCCCCHHHHHHHHHH--------------------------HcCCCchHHHHHHHHHHHhccccchhhhhhhcc
Q ss_pred -------CCcceeeEEEEEEEccC---CCeEEeCcccCCc
Q 020346 217 -------GRGKHTTRHVSLLPLSG---GGYLADTPGFNQP 246 (327)
Q Consensus 217 -------~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~ 246 (327)
| +|..+.+..... ...++||||...+
T Consensus 73 ~~~er~~G----iTid~~~~~~~~~~~~~~iiDTPGh~~f 108 (439)
T 3j2k_7 73 NQEERDKG----KTVEVGRAYFETEKKHFTILDAPGHKSF 108 (439)
T ss_pred chhHhhcC----ceEEEeEEEEecCCeEEEEEECCChHHH
No 425
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.50 E-value=0.002 Score=54.68 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=48.3
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh------cCCCEEEEeecCCCCc-HHH--HHHHHhhhhhcCCcee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVD-EEV--LNTWKSRLHTWGYEPL 140 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~------~~~~~~ivlnK~Dl~~-~~~--~~~~~~~~~~~~~~~~ 140 (327)
....+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+ ... ..........++++.+
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSME-SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHH-HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 344578999999999987653 33455566555443 4789999999999976 221 1222233445677888
Q ss_pred eccCcc-hhhHHHHHh
Q 020346 141 FCSVES-KLGLDSLLQ 155 (327)
Q Consensus 141 ~~s~~~-~~~l~~l~~ 155 (327)
.+|+.+ ..+++++-.
T Consensus 169 ~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 169 DVSANPPGKDADAPFL 184 (208)
T ss_dssp ECCC-------CHHHH
T ss_pred EeccCCCCcCHHHHHH
Confidence 889887 766655543
No 426
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.49 E-value=0.004 Score=51.00 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=54.7
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
...++|.+++|+++..|. +...+..++..... .+.|+++|.||+|+.+... ..........++++.+.+|+.+
T Consensus 72 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRR-SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 150 (169)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred hhccCCEEEEEEECCChH-HHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence 357899999999997642 33345555544433 2789999999999974321 1122233345677889999988
Q ss_pred hhhHHHHHhh
Q 020346 147 KLGLDSLLQR 156 (327)
Q Consensus 147 ~~~l~~l~~~ 156 (327)
..+++++-..
T Consensus 151 ~~~v~~l~~~ 160 (169)
T 3q85_A 151 HHNTRELFEG 160 (169)
T ss_dssp TBSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8777766443
No 427
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.48 E-value=0.0019 Score=63.65 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC-CCeEEe
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG-GGYLAD 239 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~-~~~i~D 239 (327)
.++|+|.+|||||||+|.|.+ +..+...+. .......+.... ...++|
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~------------------------~~~~~~~~T-------~~~~~~~~~~~~~~~~l~D 372 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKL------------------------GQSVTTIPT-------VGFNVETVTYKNVKFNVWD 372 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------------------------SSCCCCCCC-------SSEEEEEEESSSCEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhc------------------------CCCCCcCCc-------cceeEEEEEeCCEEEEEEE
Q ss_pred Ccc
Q 020346 240 TPG 242 (327)
Q Consensus 240 tpg 242 (327)
|+|
T Consensus 373 t~G 375 (497)
T 3lvq_E 373 VGG 375 (497)
T ss_dssp ECC
T ss_pred CCC
No 428
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.48 E-value=0.0014 Score=62.68 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=29.3
Q ss_pred hhhHHHHHhhc-CCCE--EEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l-~g~~--v~lvG~sG~GKSTLln~L~g 181 (327)
..+++.+++.+ +|+. ++|+|++|+||||+.++|++
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34677777776 6766 99999999999999999887
No 429
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.47 E-value=0.00084 Score=60.47 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++|.|||||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 430
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.47 E-value=0.0014 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+.+++|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 431
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.46 E-value=0.0033 Score=51.21 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=53.0
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhc-CCceeeccC
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLFCSV 144 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~s~ 144 (327)
....++|.+++|+++..|. +...+..++.... ..+.|+++|+||+|+.++.. .+........+ +++.+.+|+
T Consensus 70 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQS-TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred HHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 3467899999999987642 2223333332222 34789999999999975421 11122223334 577888999
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.++.+++.+-..
T Consensus 149 ~~~~gi~~l~~~ 160 (167)
T 1c1y_A 149 KSKINVNEIFYD 160 (167)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 888887776544
No 432
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.46 E-value=0.0013 Score=57.47 Aligned_cols=24 Identities=38% Similarity=0.754 Sum_probs=20.7
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
+.....+|+|+||+||||++.+|.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 345689999999999999999874
No 433
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.46 E-value=0.0069 Score=51.06 Aligned_cols=84 Identities=17% Similarity=0.080 Sum_probs=53.6
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHHHHHHHhhh-----hhcCCceeec
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLFC 142 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~ 142 (327)
..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+......+...+ ...++..+.+
T Consensus 86 ~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQE-KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSI 164 (188)
T ss_dssp HHHTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHHccCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEE
Confidence 3468999999999987642 34445555544432 578999999999997542112222221 1234567888
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++++-..
T Consensus 165 SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 165 SCKEKDNIDITLQW 178 (188)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 88887777776544
No 434
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.42 E-value=0.0014 Score=55.28 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++|+|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999864
No 435
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.41 E-value=0.00092 Score=65.59 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeeccee
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (327)
+.+++++|++||||||++..|+. ++.+..++|.+-+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~------------~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY------------FYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH------------HHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCeEEEEecC
Confidence 67899999999999999999998 667777777665544
No 436
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.41 E-value=0.0026 Score=56.22 Aligned_cols=54 Identities=28% Similarity=0.261 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccC---CCeE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYL 237 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~---~~~i 237 (327)
.++|||.+|||||||++.+.. +.-.....+..+ .....-.+..+. ...+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~------------------------~~f~~~~~~Tig----~d~~~k~~~~~~~~v~l~i 66 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY------------------------DSFDNTYQATIG----IDFLSKTMYLEDRTIRLQL 66 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------------------------SCCC--------------CEEEEEECSSCEEEEEE
T ss_pred EEEEECcCCcCHHHHHHHHHh------------------------CCCCCCcCCccc----eEEEEEEEEecceEEEEEE
Q ss_pred EeCcc
Q 020346 238 ADTPG 242 (327)
Q Consensus 238 ~Dtpg 242 (327)
+||+|
T Consensus 67 wDtaG 71 (216)
T 4dkx_A 67 WDTAG 71 (216)
T ss_dssp ECCSC
T ss_pred EECCC
No 437
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.41 E-value=0.0081 Score=49.53 Aligned_cols=85 Identities=9% Similarity=0.110 Sum_probs=51.4
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh-------cCCCEEEEeecCCCCcHHH---HHHHHhhhh-hcCCce
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV---LNTWKSRLH-TWGYEP 139 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-------~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~-~~~~~~ 139 (327)
...+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ......... ..+.+.
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred HHHhhcCCEEEEEEECCChH-HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 34567999999999987642 33334444433321 5779999999999964321 111111111 234577
Q ss_pred eeccCcchhhHHHHHhh
Q 020346 140 LFCSVESKLGLDSLLQR 156 (327)
Q Consensus 140 ~~~s~~~~~~l~~l~~~ 156 (327)
+.+|+.+..+++.+-..
T Consensus 155 ~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEE 171 (182)
T ss_dssp EEEBTTTTBSHHHHHHH
T ss_pred EEEecCCCCCHHHHHHH
Confidence 88888877777766443
No 438
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.41 E-value=0.0033 Score=53.06 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=56.2
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+.+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ...........++..+.+|
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQ-TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS 168 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred hhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3334578999999999987642 33345555544443 3678999999999975321 1122223344677888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++.+-..
T Consensus 169 a~~~~gi~~l~~~ 181 (193)
T 2oil_A 169 ALDSTNVELAFET 181 (193)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8887777766443
No 439
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.40 E-value=0.0008 Score=67.59 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++|+|++|||||||+|.|++
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~ 35 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLL 35 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 5799999999999999999974
No 440
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.40 E-value=0.0014 Score=55.13 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+|||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 441
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0042 Score=54.12 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=54.0
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeec
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (327)
.+....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ...........++..+.+
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSS-SYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHH-HHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhHHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 34445678999999999987642 33445555554443 3678999999999975321 111222334456788888
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++.+-..
T Consensus 156 Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 156 SALNSENVDKAFEE 169 (223)
T ss_dssp CCC-CCCHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 88877777665443
No 442
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.0035 Score=51.07 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=55.4
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHH---H--HHHHHhhhhhcCCceee
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE---V--LNTWKSRLHTWGYEPLF 141 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~---~--~~~~~~~~~~~~~~~~~ 141 (327)
.+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.++. . ...........+++.+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQ-SFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred hhhhhccCcEEEEEEecCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 334568999999999987642 33344545443332 367889999999997541 1 11112223345678888
Q ss_pred ccCcchhhHHHHHhhc
Q 020346 142 CSVESKLGLDSLLQRL 157 (327)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (327)
+|+.+..+++++-..+
T Consensus 148 ~Sa~~~~gi~~l~~~l 163 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGI 163 (170)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9988888777765543
No 443
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.38 E-value=0.0021 Score=61.61 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHc--CCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEccCCC---
Q 020346 161 TTVIVGPSGVGKSSLINALR--SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG--- 235 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~--g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~~~~--- 235 (327)
.++++|.+++|||||+|.|+ | .|..+++.....+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~g----------------------------------------iTi~~~~~~~~~~~~~i 62 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKG----------------------------------------TSSDITMYNNDKEGRNM 62 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEE----------------------------------------EESSSEEEEECSSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----------------------------------------EEEEeeEEEEecCCeEE
Q ss_pred eEEeCcccCCc
Q 020346 236 YLADTPGFNQP 246 (327)
Q Consensus 236 ~i~Dtpg~~~~ 246 (327)
.++||||...+
T Consensus 63 ~iiDtPGh~~f 73 (370)
T 2elf_A 63 VFVDAHSYPKT 73 (370)
T ss_dssp EEEECTTTTTC
T ss_pred EEEECCChHHH
No 444
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.38 E-value=0.0017 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+++|+|++||||||+.+.|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 445
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0018 Score=57.42 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.9
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
-++.+++|+|++||||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999986
No 446
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.36 E-value=0.0038 Score=50.46 Aligned_cols=85 Identities=15% Similarity=0.273 Sum_probs=54.0
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH-HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++++++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|..
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTK-SFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAK 147 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTT
T ss_pred HHhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCC
Confidence 33567899999999987542 22334444433322 2789999999999976321 111222234457788889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++++...
T Consensus 148 ~~~gi~~l~~~ 158 (166)
T 2ce2_X 148 TRQGVEDAFYT 158 (166)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88777776544
No 447
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0013 Score=67.27 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcCC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRSS 182 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g~ 182 (327)
.-.++|+|++|+|||||+|.|++.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHh
Confidence 458999999999999999999984
No 448
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.35 E-value=0.0015 Score=60.30 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+..+.|+|+|||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
No 449
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.34 E-value=0.0039 Score=51.51 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=53.1
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh-----cCCC-EEEEeecCCCCcHHH--HHHHHhhhhhcCCceeec
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIP-LTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-----~~~~-~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (327)
+..+.++|.+++|+++..|. +...+..++..... ...| +++|.||+|+.+... .+........++++.+.+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQ-SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV 152 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEE
T ss_pred hHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEE
Confidence 33568999999999987643 23334444433332 2566 688999999975321 111122234457788889
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++.+-..
T Consensus 153 Sa~~~~gi~~l~~~ 166 (178)
T 2hxs_A 153 SAKTGDSVFLCFQK 166 (178)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 98887777766544
No 450
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.34 E-value=0.0039 Score=51.93 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=53.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHH----HhcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a----~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
+..+.++|.+++|+++..+. +...+..++... ...+.|+++|.||+|+.+... ..........++.+.+.+|+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 162 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 162 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred HHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEecc
Confidence 34578999999999997642 223344443332 235779999999999965321 11122233445678888898
Q ss_pred c-chhhHHHHHhh
Q 020346 145 E-SKLGLDSLLQR 156 (327)
Q Consensus 145 ~-~~~~l~~l~~~ 156 (327)
. +..+++.+-..
T Consensus 163 ~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 163 KDPPLNVDKTFHD 175 (183)
T ss_dssp SSSCBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8 77777766443
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.34 E-value=0.0032 Score=54.03 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=55.0
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCC-ceeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGY-EPLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~s~~ 145 (327)
..+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... .+........+++ ..+.+|+.
T Consensus 97 ~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRS-SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp HHHTTCSEEEEEEETTBHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTT
T ss_pred HHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 3568999999999987642 23344555544432 4678999999999975321 1222233345677 78889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 176 ~g~gi~~l~~~ 186 (201)
T 2hup_A 176 DSSNVEEAFLR 186 (201)
T ss_dssp TTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766544
No 452
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.34 E-value=0.00092 Score=66.16 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc-----------------------------eeecc
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-----------------------------QRVGE 211 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-----------------------------~~v~~ 211 (327)
.++|+|.+|+|||||+|.|++ . .+-..
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~------------------------~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 90 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLY------------------------DLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTN 90 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHH------------------------HTTSSCHHHHHHHCC--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHH------------------------hcCCccHHHHHHHHHHHHhcCCCcchhhhhhccch
Q ss_pred ccccCCCcceeeEEEEEEEccC---CCeEEeCcccCCc
Q 020346 212 VSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQP 246 (327)
Q Consensus 212 ~s~~~~~g~~tt~~i~~v~q~~---~~~i~Dtpg~~~~ 246 (327)
.....| .|..+.+..... ...++||||...+
T Consensus 91 ~e~~~G----iTi~~~~~~~~~~~~~~~iiDTPG~~~f 124 (483)
T 3p26_A 91 EERERG----VTVSICTSHFSTHRANFTIVDAPGHRDF 124 (483)
T ss_dssp ----CC----SSCCCCEEEEECSSCEEEEECCCCCGGG
T ss_pred hHhhcC----cceEeeeEEEecCCceEEEEECCCcHHH
No 453
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.34 E-value=0.0039 Score=52.74 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=55.7
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHH-HHHHHHHH--hcCCCEEEEeecCCCCcHH----HHHHHHhhhhhcCCc-
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAE--STGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYE- 138 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l-~r~L~~a~--~~~~~~~ivlnK~Dl~~~~----~~~~~~~~~~~~~~~- 138 (327)
..+....+.++|.+++|+++..+. +...+ ..++.... ..+.|+++|.||+|+.++. ...........+++.
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRT-SFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred HHHhHhhccCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 344445678999999999987642 22233 33333333 2367999999999997531 112222333445666
Q ss_pred eeeccCcchhhHHHHHhh
Q 020346 139 PLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~ 156 (327)
.+.+|+.+..+++++-..
T Consensus 164 ~~~~Sa~~~~gi~~l~~~ 181 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEK 181 (194)
T ss_dssp EEECBTTTTBSHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHH
Confidence 888999888877776544
No 454
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.33 E-value=0.0029 Score=61.05 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEcc--------
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS-------- 232 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~-------- 232 (327)
.++++|++|+|||||++.|.| ......+....+|.-...........
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g-------------------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y 66 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTG-------------------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRY 66 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHT-------------------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHhC-------------------------CccccChhhhcCCcEEEEeeeeeecccccccccc
Q ss_pred ----------------CCCeEEeCcc
Q 020346 233 ----------------GGGYLADTPG 242 (327)
Q Consensus 233 ----------------~~~~i~Dtpg 242 (327)
....++||||
T Consensus 67 ~~~~~~~~~g~~~~~~~~i~iiDtPG 92 (410)
T 1kk1_A 67 STSPVCPYCGHETEFVRRVSFIDAPG 92 (410)
T ss_dssp ESSSBCTTTCCBCEEEEEEEEEECSS
T ss_pred cccccccccCcccccccEEEEEECCC
No 455
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.33 E-value=0.00028 Score=70.43 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCEEEEEcCCCCCHHHHHHHHc
Q 020346 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (327)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~ 180 (327)
++++++.+.....+|+|+||+||||||.+|.
T Consensus 51 ~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 51 ITQLELELGGGFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp BSCEEEECCCSEEEEEESHHHHHHHHTHHHH
T ss_pred eeeEEEecCCCeEEEEcCCCCCHHHHHHHHH
Confidence 4455556644499999999999999999983
No 456
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.32 E-value=0.0019 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+..++|+|++||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 457
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.32 E-value=0.0046 Score=53.73 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred ccccccccccccEEEEEeecCCCCCChHH-HHHHHHHHHh--cCCCEEEEeecCCCCcHHH--------------HHHHH
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFA-LTRFLVEAES--TGIPLTLALNKVELVDEEV--------------LNTWK 129 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~-l~r~L~~a~~--~~~~~~ivlnK~Dl~~~~~--------------~~~~~ 129 (327)
..+.+....++|.+++|+++..+. +... +..++..... .+.|+++|.||+|+.++.. .....
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPE-TVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTH-HHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 334445678999999999998653 2333 3445444433 3779999999999975311 11112
Q ss_pred hhhhhcCC-ceeeccCcchhh-HHHHHhh
Q 020346 130 SRLHTWGY-EPLFCSVESKLG-LDSLLQR 156 (327)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~-l~~l~~~ 156 (327)
.....+++ ..+.+|+.+..+ ++.+-..
T Consensus 168 ~~~~~~~~~~~~e~SA~~g~g~v~~lf~~ 196 (214)
T 3q3j_B 168 AIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196 (214)
T ss_dssp HHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeccCCCcccHHHHHHH
Confidence 22344566 778888887776 7666443
No 458
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.32 E-value=0.0019 Score=64.02 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=28.9
Q ss_pred hhHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++.+.-..+|++++|+|+||+|||||+|.|.+
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 3566665556999999999999999999999987
No 459
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.32 E-value=0.0032 Score=54.65 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=27.3
Q ss_pred hhhHHHHHhhc---CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 147 KLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 147 ~~~l~~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
...++.+.... .+..+.|.||+|+|||||++.+..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 44555554433 578999999999999999999986
No 460
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.31 E-value=0.0017 Score=61.19 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=31.0
Q ss_pred hcCccccc------cccccccccccCCceEEcccH------HHHHHHHHHHHHHH
Q 020346 266 MLKANEPA------KCSFNNCLHLGEPGCVVKGDW------ERYQYYFQLLDEIR 308 (327)
Q Consensus 266 ~LSgGq~q------~~~~~~~~h~~ep~~~v~~~~------~r~~~~~~ll~e~~ 308 (327)
.|||||+| +++++.++ +.+|.++++|+| .+...+..+++++.
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l-~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~ 301 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYL-AGEISLLILDEPTPYLDEERRRKLITIMERYL 301 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHT-TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG
T ss_pred HCCHHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 39999999 55666676 789999999954 46566666666653
No 461
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.31 E-value=0.0034 Score=53.26 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=54.5
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh----cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
....++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ..........++++.+.+|+.
T Consensus 81 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159 (206)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCC
Confidence 4567899999999987642 33344444433332 3789999999999976421 122223344567788888888
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++++-..
T Consensus 160 ~g~gi~~l~~~ 170 (206)
T 2bov_A 160 TRANVDKVFFD 170 (206)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 77777766443
No 462
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.30 E-value=0.013 Score=49.70 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=53.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHHHHHHhhhh------------h
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH------------T 134 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~------------~ 134 (327)
+....++|.+++|+++..+. +...+..++.... ..+.|+++|.||+|+.+....+.....+. .
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPE-RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSS
T ss_pred HHHHhcCCEEEEEEECCChH-HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccccccc
Confidence 34567999999999997653 3444555554443 25789999999999975211122222221 1
Q ss_pred cCCceeeccCcchhhHHHHHhh
Q 020346 135 WGYEPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~ 156 (327)
.+.+.+.+|+.++.+++++-..
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~ 185 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQW 185 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHH
T ss_pred ceEEEEEeECCcCCCHHHHHHH
Confidence 2346778888888877776544
No 463
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.30 E-value=0.0054 Score=49.66 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=54.0
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
..+.++|.+++++++..+. +...+..++.... ..+.|+++|+||+|+.++.+ ..........++++.+.+|+.
T Consensus 70 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTT
T ss_pred HHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCC
Confidence 3467899999999987642 2233443332222 24789999999999975421 111222334457788999998
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++.+-..
T Consensus 149 ~~~gi~~l~~~ 159 (167)
T 1kao_A 149 SKTMVDELFAE 159 (167)
T ss_dssp CHHHHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 88887776543
No 464
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.29 E-value=0.0019 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
-..++|+|.+|||||||++.|+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 465
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.29 E-value=0.0021 Score=62.11 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecceeeccccccCCCcceeeEEEEEEEcc--------
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS-------- 232 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~v~~~s~~~~~g~~tt~~i~~v~q~-------- 232 (327)
.++++|..++|||||++.|.| ......+....+| .|..+++....
T Consensus 10 ~I~iiG~~d~GKSTLi~~L~g-------------------------~~~~~~~~e~~~g--iTi~~~~~~~~~~~~~~~~ 62 (408)
T 1s0u_A 10 NIGMVGHVDHGKTSLTKALTG-------------------------VWTDRHSEELRRG--ISIRLGYADCEIRKCPQCG 62 (408)
T ss_dssp EEEEESCTTSSHHHHHHHHHS-------------------------CCCCC-------C--CCCCCEEEEEEEEECTTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhC-------------------------CccccCcccccCC--cEEEecccccccccccccc
Q ss_pred ------------------CCCeEEeCcc
Q 020346 233 ------------------GGGYLADTPG 242 (327)
Q Consensus 233 ------------------~~~~i~Dtpg 242 (327)
....++||||
T Consensus 63 ~y~~~~~~~~~g~~~~~~~~i~iiDtPG 90 (408)
T 1s0u_A 63 TYTTKPRCPNCLAETEFLRRVSFVDSPG 90 (408)
T ss_dssp CEESSSBCTTSCCBCEEEEEEEEEECSS
T ss_pred cccccccccccCcccccccEEEEEECCC
No 466
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.28 E-value=0.0065 Score=51.64 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=54.3
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh-------cCCCEEEEeecCCCCcHHH-HHHHHhhhh-hcCCc
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV-LNTWKSRLH-TWGYE 138 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-------~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~-~~~~~ 138 (327)
.+....+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ......... ..+++
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP 150 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC
T ss_pred HhHHHHHhCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce
Confidence 33444578999999999987642 22334444333221 4679999999999974321 111112222 34567
Q ss_pred eeeccCcchhhHHHHHhhc
Q 020346 139 PLFCSVESKLGLDSLLQRL 157 (327)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (327)
.+.+|+.++.+++.+-..+
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp EEECBTTTTBSHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHH
Confidence 8888888877777665543
No 467
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.28 E-value=0.0036 Score=52.05 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=52.1
Q ss_pred cccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHh--cCCCEEEEeecCCCCcHHHHHH--------------HHh
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVLNT--------------WKS 130 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~~~--------------~~~ 130 (327)
.+.+..+.++|.+++|+++..+. +...+. .++..... .+.|+++|.||+|+.+...... ...
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 33444678999999999987642 233333 33333332 2789999999999975432111 111
Q ss_pred hhhhcCC-ceeeccCcchhhHHHHHh
Q 020346 131 RLHTWGY-EPLFCSVESKLGLDSLLQ 155 (327)
Q Consensus 131 ~~~~~~~-~~~~~s~~~~~~l~~l~~ 155 (327)
....+++ +.+.+|+.+..+++.+-.
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~ 172 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFD 172 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHH
Confidence 2233455 677777777666666543
No 468
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.27 E-value=0.0016 Score=54.80 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=17.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..+.|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 469
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.26 E-value=0.002 Score=55.90 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999954
No 470
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.26 E-value=0.0022 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..++|+|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 471
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.26 E-value=0.0021 Score=54.63 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 472
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.26 E-value=0.0039 Score=51.68 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=27.1
Q ss_pred chhhHHHHHhhc---CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 146 SKLGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 146 ~~~~l~~l~~~l---~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
....++.+...+ .+..+.|.|++|+|||||++.+..
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 344555554444 346789999999999999999987
No 473
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.26 E-value=0.0023 Score=55.93 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
++..++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
No 474
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.25 E-value=0.0056 Score=52.77 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=53.5
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s~~ 145 (327)
.....++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.+.... ..........+++.+.+|+.
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (218)
T 4djt_A 79 DVYYIGASGAILFFDVTSRI-TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAK 157 (218)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTT
T ss_pred HHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecC
Confidence 33567899999999987642 2333444443333 346899999999999765321 11223344567788889988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+-..
T Consensus 158 ~g~gv~~l~~~ 168 (218)
T 4djt_A 158 TAHNFGLPFLH 168 (218)
T ss_dssp TTBTTTHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777766444
No 475
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.25 E-value=0.0055 Score=51.06 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=55.2
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHH---hcCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
.+..+.++|.+++|+++..+. +...+..++.... ..+.|+++|.||+|+.++.. ...........+++.+.+|+
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecC
Confidence 344678999999999987642 3334444443332 35778999999999965321 11222333456778888898
Q ss_pred cchhhHHHHHhh
Q 020346 145 ESKLGLDSLLQR 156 (327)
Q Consensus 145 ~~~~~l~~l~~~ 156 (327)
.+..+++.+-..
T Consensus 155 ~~~~gi~~l~~~ 166 (186)
T 2bme_A 155 LTGENVEEAFVQ 166 (186)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 877777665443
No 476
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.25 E-value=0.0042 Score=51.75 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=53.6
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHH----hcCCCEEEEeecCCCCcHHHH-HHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~----~~~~~~~ivlnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.+.... .........++++.+.+|+.
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (189)
T 4dsu_A 70 DQYMRTGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAK 148 (189)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 34567899999999987642 2233444433332 247899999999999753211 11122233456788888988
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
++.+++++-..
T Consensus 149 ~g~gi~~l~~~ 159 (189)
T 4dsu_A 149 TRQGVDDAFYT 159 (189)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 87777765443
No 477
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.25 E-value=0.0059 Score=51.09 Aligned_cols=84 Identities=6% Similarity=0.030 Sum_probs=54.7
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh-cCCCEEEEeecCCCCcHH-HHHHHHhhhhhcCCceeeccCcchhh
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-TGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLG 149 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-~~~~~~ivlnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (327)
..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+.. ............+++.+.+|+.+..+
T Consensus 112 ~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 190 (208)
T 3clv_A 112 LYYRGATCAIVVFDISNSN-TLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190 (208)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred HHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3467999999999987652 33345555544443 568999999999942211 12223334455677888899988777
Q ss_pred HHHHHhh
Q 020346 150 LDSLLQR 156 (327)
Q Consensus 150 l~~l~~~ 156 (327)
++.+-..
T Consensus 191 i~~l~~~ 197 (208)
T 3clv_A 191 IKNIFYM 197 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766443
No 478
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0062 Score=51.42 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=54.9
Q ss_pred cccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCcc
Q 020346 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (327)
Q Consensus 72 ~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (327)
..+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... ..........++++.+.+|+.+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEE-SFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKE 169 (191)
T ss_dssp HHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHHccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCC
Confidence 3568999999999987642 23344555544443 4788999999999965421 1111222344577888999988
Q ss_pred hhhHHHHHhh
Q 020346 147 KLGLDSLLQR 156 (327)
Q Consensus 147 ~~~l~~l~~~ 156 (327)
..+++++-..
T Consensus 170 ~~gi~~l~~~ 179 (191)
T 3dz8_A 170 NISVRQAFER 179 (191)
T ss_dssp TBSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8777766443
No 479
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.0024 Score=54.87 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.3
Q ss_pred cCCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 157 l~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
..+..++|+|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3677899999999999999999975
No 480
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.24 E-value=0.0014 Score=59.00 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+..+.|+|+|||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 481
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.23 E-value=0.0019 Score=58.28 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|+||||||||.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999976
No 482
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.21 E-value=0.021 Score=49.19 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred cccccEEEEEeecCCCCCChHHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHH----Hhhhhh-------cCCceeec
Q 020346 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW----KSRLHT-------WGYEPLFC 142 (327)
Q Consensus 74 ~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~----~~~~~~-------~~~~~~~~ 142 (327)
+..+|.+++|+++..+ ++.. -..++......+.|+++|+||+|+.+....... ...+.. .+.+.+.+
T Consensus 113 ~~~~d~vi~v~d~~~~-~~~~-~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (223)
T 4dhe_A 113 RPQLCGMILMMDARRP-LTEL-DRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLF 190 (223)
T ss_dssp CTTEEEEEEEEETTSC-CCHH-HHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred CcCcCEEEEEEeCCCC-CCHH-HHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEe
Confidence 4558999999998764 3322 222333344578899999999999876543222 222322 34567888
Q ss_pred cCcchhhHHHHHhh
Q 020346 143 SVESKLGLDSLLQR 156 (327)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (327)
|+.+..+++++...
T Consensus 191 SA~~g~gv~~l~~~ 204 (223)
T 4dhe_A 191 SALKRTGLDDAHAL 204 (223)
T ss_dssp BTTTTBSHHHHHHH
T ss_pred ecCCCcCHHHHHHH
Confidence 88777777665443
No 483
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.21 E-value=0.0024 Score=54.71 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
.+++|+|+||||||||++.|.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 484
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.21 E-value=0.0021 Score=56.21 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHcC
Q 020346 159 DQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 159 g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+..++|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 485
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.20 E-value=0.0054 Score=52.70 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=54.8
Q ss_pred ccccccccccccEEEEEeecCCCCCChHHHH-HHHHHHHh--cCCCEEEEeecCCCCcHHHHHH--------------HH
Q 020346 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVLNT--------------WK 129 (327)
Q Consensus 67 ~~l~r~~~anvD~lliv~~~~~p~~~~~~l~-r~L~~a~~--~~~~~~ivlnK~Dl~~~~~~~~--------------~~ 129 (327)
..+.+..+.++|.+++|+++..+. +...+. .++..... .+.|+++|.||+|+.+...... ..
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 344445678999999999987642 222333 34433333 3789999999999976433111 11
Q ss_pred hhhhhcCC-ceeeccCcchhhHHHHHhh
Q 020346 130 SRLHTWGY-EPLFCSVESKLGLDSLLQR 156 (327)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~ 156 (327)
.....+++ +.+.+|+.++.+++.+-..
T Consensus 171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 198 (204)
T 4gzl_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDE 198 (204)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHhcCCcEEEEeeCCCCCCHHHHHHH
Confidence 12233454 4777888877777766443
No 486
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.19 E-value=0.0017 Score=62.02 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcC
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g 181 (327)
+|.++.|.||||+|||||+..++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999998
No 487
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.18 E-value=0.0023 Score=55.54 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999964
No 488
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.17 E-value=0.013 Score=47.30 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=52.3
Q ss_pred ccccccEEEEEeecCCCCCCh-HHHHHHHHHHHhcCCCEEEEeecCCCCcHHHHHHHHhhhhhcCC-ceeeccCcchhhH
Q 020346 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGL 150 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~-~~l~r~L~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l 150 (327)
...++|.++++++...+.... ..+.+++ ...+.|+++|.||+|+.+..+ ....+..+++ +.+.+|..+..++
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYL---RRKGKPVILVATKVDDPKHEL---YLGPLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHH---HHHTCCEEEEEECCCSGGGGG---GCGGGGGGSSCSCEECBTTTTBSH
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHH---HhcCCCEEEEEECcccccchH---hHHHHHhCCCCCeEEEecccCCCh
Confidence 467899999999987653221 1233333 346889999999999986531 1223335677 6788998888777
Q ss_pred HHHHhh
Q 020346 151 DSLLQR 156 (327)
Q Consensus 151 ~~l~~~ 156 (327)
+++-..
T Consensus 150 ~~l~~~ 155 (161)
T 2dyk_A 150 EELLEA 155 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 489
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.17 E-value=0.0093 Score=62.41 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHcCCC
Q 020346 160 QTTVIVGPSGVGKSSLINALRSSP 183 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g~~ 183 (327)
-.++|+|.+++|||||+|+|.|..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999953
No 490
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.17 E-value=0.0075 Score=50.94 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=54.4
Q ss_pred ccccccEEEEEeecCCCCCChHHHHHHHHHHHh------cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccC
Q 020346 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 73 ~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~------~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (327)
.+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... ..........+++..+.+|+
T Consensus 88 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 166 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQ-SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSA 166 (187)
T ss_dssp HHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCS
T ss_pred HHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEee
Confidence 457899999999997642 33445555444432 4789999999999965321 11122233445778889999
Q ss_pred -cchhhHHHHHhh
Q 020346 145 -ESKLGLDSLLQR 156 (327)
Q Consensus 145 -~~~~~l~~l~~~ 156 (327)
.+..+++.+-..
T Consensus 167 ~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 167 CLDFEHVQHVFHE 179 (187)
T ss_dssp SSCSHHHHHHHHH
T ss_pred cCccccHHHHHHH
Confidence 777777766443
No 491
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.16 E-value=0.0033 Score=53.80 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=54.9
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeeccCc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (327)
+..+.++|.+++|+++..+. +...+..++..... .+.|+++|+||+|+.+... ...........++..+.+|+.
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 170 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRE-TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 170 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 34578999999999987642 33345555544432 4778999999999965321 112223334466778888888
Q ss_pred chhhHHHHHhh
Q 020346 146 SKLGLDSLLQR 156 (327)
Q Consensus 146 ~~~~l~~l~~~ 156 (327)
+..+++.+-..
T Consensus 171 ~g~gi~~l~~~ 181 (200)
T 2o52_A 171 TGENVEEAFLK 181 (200)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 77777665443
No 492
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.16 E-value=0.0038 Score=60.12 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeecc--------------eeeccccccCCCcceeeEEE
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED--------------QRVGEVSTKSGRGKHTTRHV 226 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~g--------------~~v~~~s~~~~~g~~tt~~i 226 (327)
.++++|.+|+|||||++.|.+ . .+........+ .|..+
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~------------------------~~~~~g~~~~~~~~~~d~~~~e~~~g----iTi~~ 56 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITK------------------------ILAEGGGAKFKKYEEIDNAPEERARG----ITINA 56 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHH------------------------HHHHTTSBCCCCHHHHHSCCEEEETT----EEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHhC------------------------hhhhcCccccchhhhhhcCHHHHhcC----cEEEe
Q ss_pred EEEEccCCC---eEEeCcc
Q 020346 227 SLLPLSGGG---YLADTPG 242 (327)
Q Consensus 227 ~~v~q~~~~---~i~Dtpg 242 (327)
.++...... .++||||
T Consensus 57 ~~~~~~~~~~~~~iiDtpG 75 (397)
T 1d2e_A 57 AHVEYSTAARHYAHTDCPG 75 (397)
T ss_dssp EEEEEECSSCEEEEEECSS
T ss_pred eeEEeccCCeEEEEEECCC
No 493
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0095 Score=51.08 Aligned_cols=55 Identities=24% Similarity=0.455 Sum_probs=36.8
Q ss_pred cccccccccccEEEEEeecCCCCCChHHH-HHHHHHHHh--cCCCEEEEeecCCCCcHH
Q 020346 68 EILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEE 123 (327)
Q Consensus 68 ~l~r~~~anvD~lliv~~~~~p~~~~~~l-~r~L~~a~~--~~~~~~ivlnK~Dl~~~~ 123 (327)
.+.+..+.++|.+++|+++..+. +...+ ..++..... .+.|+++|+||+|+.+..
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPD-SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH
T ss_pred HHHHhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc
Confidence 33445678999999999987642 22233 233333333 378999999999997653
No 494
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.15 E-value=0.0027 Score=53.62 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHcC
Q 020346 161 TTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g 181 (327)
.++|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 495
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.14 E-value=0.0023 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHcC
Q 020346 160 QTTVIVGPSGVGKSSLINALRS 181 (327)
Q Consensus 160 ~~v~lvG~sG~GKSTLln~L~g 181 (327)
..++|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 496
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.12 E-value=0.0023 Score=54.59 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=50.6
Q ss_pred cccccccccEEEEEeecCCCCCChHHHHHHHHHHHhc---CCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeeccC
Q 020346 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST---GIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCSV 144 (327)
Q Consensus 70 ~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~~---~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s~ 144 (327)
....+.++|.+++|+++..+. +...+..++...... +.|+++|.||+|+.+.... .........++++.+.+|+
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA 177 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 177 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSH-HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC
T ss_pred HHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEEC
Confidence 334578999999999987642 344566666555432 6789999999999754311 0111223345677888898
Q ss_pred cchhhHHHHHhhc
Q 020346 145 ESKLGLDSLLQRL 157 (327)
Q Consensus 145 ~~~~~l~~l~~~l 157 (327)
.+..+++++-..+
T Consensus 178 ~~g~gv~~l~~~l 190 (199)
T 3l0i_B 178 KNATNVEQSFMTM 190 (199)
T ss_dssp ---HHHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888887765543
No 497
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0063 Score=52.49 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=55.0
Q ss_pred ccccccccccEEEEEeecCCCCCChHHHHHHHHHHHh---cCCCEEEEeecCCCCcHHH--HHHHHhhhhhcCCceeecc
Q 020346 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 69 l~r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (327)
+.+..+.++|.+++|+++..+. +...+..++..... .+.|+++|.||+|+.+... ...........++..+.+|
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 169 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEE-SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETS 169 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3444678999999999987642 33345555544432 3678899999999975321 1111122234567788889
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 170 a~~g~gv~~l~~~ 182 (201)
T 2ew1_A 170 AKESDNVEKLFLD 182 (201)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 8887777665443
No 498
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0038 Score=50.98 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=52.7
Q ss_pred ccccccccEEEEEeecCCCCCChHHHHHHHHHHHh-----cCCCEEEEeecCCCCcHHHH--HHHHhhhhhcCCceeecc
Q 020346 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFCS 143 (327)
Q Consensus 71 r~~~anvD~lliv~~~~~p~~~~~~l~r~L~~a~~-----~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~s 143 (327)
+..+.++|.+++|+++..|. +...+..++..... .+.|+++|+||+|+.+.... .........++++.+.+|
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 147 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQ-SLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS 147 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHhcccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEec
Confidence 34567899999999987642 12223333322221 37899999999999754211 111222334567888899
Q ss_pred CcchhhHHHHHhh
Q 020346 144 VESKLGLDSLLQR 156 (327)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (327)
+.+..+++++-..
T Consensus 148 a~~~~gi~~l~~~ 160 (172)
T 2erx_A 148 AKLNHNVKELFQE 160 (172)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCcCHHHHHHH
Confidence 8888777776554
No 499
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.11 E-value=0.0021 Score=61.46 Aligned_cols=36 Identities=17% Similarity=-0.025 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHcCCCCCCCcccccccccccccceeec
Q 020346 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (327)
Q Consensus 158 ~g~~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (327)
.+..++|+|+||+|||||++.|+. .+.+..+.|++-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~------------~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL------------REYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH------------HHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH------------HHHHCCCEEEEE
Confidence 467799999999999999999997 444556666653
No 500
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.11 E-value=0.0026 Score=62.01 Aligned_cols=74 Identities=22% Similarity=0.151 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHcCCCCCCCccccccc-----------------ccccccceeecceeeccccccCCCcceee
Q 020346 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNW-----------------FEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (327)
Q Consensus 161 ~v~lvG~sG~GKSTLln~L~g~~~~~~~~~~~~~-----------------~~p~~G~i~~~g~~v~~~s~~~~~g~~tt 223 (327)
.++++|.+|+|||||+|.|++ - ..++.|.-+-....+........+|....
T Consensus 26 ~i~iiG~~~~GKSTLi~~Ll~------------~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~ 93 (434)
T 1zun_B 26 RFLTCGNVDDGKSTLIGRLLH------------DSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITID 93 (434)
T ss_dssp EEEEECCTTSSHHHHHHHHHH------------HTTCC------------------CCC--CHHHHHHHHC-----CCCC
T ss_pred EEEEEECCCCCHHHHHHHHHh------------hcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEE
Q ss_pred EEEEEEEccC-CCeEEeCcccCCc
Q 020346 224 RHVSLLPLSG-GGYLADTPGFNQP 246 (327)
Q Consensus 224 ~~i~~v~q~~-~~~i~Dtpg~~~~ 246 (327)
....++.... ...++||||...+
T Consensus 94 ~~~~~~~~~~~~~~iiDtpGh~~f 117 (434)
T 1zun_B 94 VAYRYFSTAKRKFIIADTPGHEQY 117 (434)
T ss_dssp CEEEEEECSSEEEEEEECCCSGGG
T ss_pred eeeeEeecCCceEEEEECCChHHH
Done!