Query 020347
Match_columns 327
No_of_seqs 202 out of 954
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 15:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020347.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020347hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 4.3 5.7E+02 0.042 20.6 5.7 70 209-278 36-114 (262)
2 d1h2sa_ f.13.1.1 (A:) Sensory 3.3 5.7E+02 0.041 20.1 4.6 51 249-299 158-211 (225)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 2.9 89 0.0065 17.7 -0.8 15 260-274 6-20 (26)
4 d3ct6a1 c.54.1.2 (A:1-123) PTS 2.8 4.7E+02 0.034 19.0 3.2 32 222-253 88-119 (123)
5 d1tdza1 a.156.1.2 (A:132-219) 2.6 1.7E+02 0.013 20.3 0.3 18 212-229 24-41 (88)
6 d1k3xa1 a.156.1.2 (A:125-213) 2.6 1.6E+02 0.012 20.4 0.0 18 212-229 28-45 (89)
7 d1r2za1 a.156.1.2 (A:135-228) 2.5 1.8E+02 0.013 20.4 0.3 17 212-228 24-40 (94)
8 d1wfza_ d.224.1.2 (A:) Iron-su 2.4 9.2E+02 0.067 17.5 4.6 61 221-301 56-116 (130)
9 d1ee8a1 a.156.1.2 (A:122-210) 2.4 2.2E+02 0.016 19.7 0.6 18 212-229 24-41 (89)
10 d2peoa1 a.280.1.1 (A:1-115) Ru 2.4 4.9E+02 0.036 19.1 2.8 26 124-149 9-34 (115)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.34 E-value=5.7e+02 Score=20.55 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=49.5
Q ss_pred hhhhHHHHHHhhhchhhHHHHHHHHHHHHhcCCCh---hhHHHHHHhhhHHHHhcc-ce-----echhhhhhheecccC
Q 020347 209 WWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESP---FSIFSELKATFWPMLTAG-WK-----LWPFAHLVTYGLVPV 278 (327)
Q Consensus 209 w~nv~~KVllDQtV~sPv~~~~Ff~~~~lLeG~s~---~~i~~~lk~~f~p~l~a~-wk-----~WPpvqlVNF~fVP~ 278 (327)
..+.+.+.+++.....|..+.+|-++.+++.-+.. .++.+++..+|-..+..+ |+ +-=+++++|+.+++.
T Consensus 36 ~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 36 YKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 34667888888888899998888888888876654 246666666666666653 22 345677777777754
No 2
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=3.32 E-value=5.7e+02 Score=20.12 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHhhhHHHHhccceechhhhhhh---eecccCCchhhhhhHHHHHHHHHHhhh
Q 020347 249 ELKATFWPMLTAGWKLWPFAHLVT---YGLVPVEQRLLWVDCVELIWVTILSTY 299 (327)
Q Consensus 249 ~lk~~f~p~l~a~wk~WPpvqlVN---F~fVP~~~RvLfvn~Vgl~Wn~yLS~~ 299 (327)
+.-+........+|.+.|.+-++. +..+-+..+..+-+...++--+-..++
T Consensus 158 ~~~~~l~~~~~v~W~iYPi~y~l~~~g~~~~~~~~~~~~y~i~D~i~K~~FG~~ 211 (225)
T d1h2sa_ 158 SLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFI 211 (225)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHSTTTTCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666788999999998774 445555556665555565554444433
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.90 E-value=89 Score=17.72 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=8.8
Q ss_pred ccceechhhhhhhee
Q 020347 260 AGWKLWPFAHLVTYG 274 (327)
Q Consensus 260 a~wk~WPpvqlVNF~ 274 (327)
+-|.||.+..++.|+
T Consensus 6 aiw~fw~ffalli~y 20 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYY 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346667666665553
No 4
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=2.77 E-value=4.7e+02 Score=19.00 Aligned_cols=32 Identities=13% Similarity=-0.117 Sum_probs=25.7
Q ss_pred chhhHHHHHHHHHHHHhcCCChhhHHHHHHhh
Q 020347 222 AWAAAWNSIYYMVLGLLRLESPFSIFSELKAT 253 (327)
Q Consensus 222 V~sPv~~~~Ff~~~~lLeG~s~~~i~~~lk~~ 253 (327)
+-+|+.-..+-+......|.+++++.+++++-
T Consensus 88 i~~p~tegal~Aa~~a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 88 FNVPLIEGAYTASALLEAGATFEAIKEQLEKM 119 (123)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCHHHHHHHHGGG
T ss_pred EcCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 34667777777888889999999999998754
No 5
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=2.59 E-value=1.7e+02 Score=20.31 Aligned_cols=18 Identities=22% Similarity=-0.031 Sum_probs=14.7
Q ss_pred hHHHHHHhhhchhhHHHH
Q 020347 212 VPAKVAFDQTAWAAAWNS 229 (327)
Q Consensus 212 v~~KVllDQtV~sPv~~~ 229 (327)
.++++++||.+++-+-|.
T Consensus 24 ~ik~~LldQ~~iaGIGNi 41 (88)
T d1tdza1 24 KIKPYLLEQTLVAGLGNI 41 (88)
T ss_dssp BHHHHHHTSSSSSCCCHH
T ss_pred cHHHHHHhccccCCcChH
Confidence 578899999999888553
No 6
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=2.59 E-value=1.6e+02 Score=20.39 Aligned_cols=18 Identities=28% Similarity=0.062 Sum_probs=14.7
Q ss_pred hHHHHHHhhhchhhHHHH
Q 020347 212 VPAKVAFDQTAWAAAWNS 229 (327)
Q Consensus 212 v~~KVllDQtV~sPv~~~ 229 (327)
.++++++||-+++-+-|.
T Consensus 28 ~Ik~~LlDQ~~~aGIGN~ 45 (89)
T d1k3xa1 28 QFAGLLLDQAFLAGLGNY 45 (89)
T ss_dssp CHHHHTTCTTTSBTCCHH
T ss_pred hHHHHHhcCccccccCcH
Confidence 578899999999888553
No 7
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.52 E-value=1.8e+02 Score=20.41 Aligned_cols=17 Identities=29% Similarity=0.135 Sum_probs=14.1
Q ss_pred hHHHHHHhhhchhhHHH
Q 020347 212 VPAKVAFDQTAWAAAWN 228 (327)
Q Consensus 212 v~~KVllDQtV~sPv~~ 228 (327)
.++.+++||.+++-+-|
T Consensus 24 ~ik~~LlDQ~~~aGiGN 40 (94)
T d1r2za1 24 SVKALLLDQTVVAGFGN 40 (94)
T ss_dssp BHHHHHHCTTTSSSCCH
T ss_pred cHHHHHHhccccCCccc
Confidence 57889999999988744
No 8
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=2.41 E-value=9.2e+02 Score=17.50 Aligned_cols=61 Identities=8% Similarity=-0.016 Sum_probs=40.9
Q ss_pred hchhhHHHHHHHHHHHHhcCCChhhHHHHHHhhhHHHHhccceechhhhhhheecccCCchhhhhhHHHHHHHHHHhhhc
Q 020347 221 TAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYS 300 (327)
Q Consensus 221 tV~sPv~~~~Ff~~~~lLeG~s~~~i~~~lk~~f~p~l~a~wk~WPpvqlVNF~fVP~~~RvLfvn~Vgl~Wn~yLS~~a 300 (327)
..++++..+.--++..++.|++++++.+--..+.... +. +|+. =+.|+.+.|.++-..+.
T Consensus 56 ~~GC~is~AsaS~~tel~~Gkt~~ea~~i~~~~i~~~-------------l~---l~p~----R~~CA~La~~aL~~Al~ 115 (130)
T d1wfza_ 56 TFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKE-------------LC---LPPV----KLHCSMLAEDAIKAALA 115 (130)
T ss_dssp CCSCHHHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHH-------------HT---CCGG----GHHHHHHHHHHHHHHHH
T ss_pred eeCCchhHHHHHHHHHHHhccCHHHHHhcCcHHHHHH-------------cC---CCcc----hhhHHHHHHHHHHHHHH
Confidence 3456677777778888999999998775433333222 21 2322 35789999998887776
Q ss_pred c
Q 020347 301 N 301 (327)
Q Consensus 301 n 301 (327)
+
T Consensus 116 ~ 116 (130)
T d1wfza_ 116 D 116 (130)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=2.41 E-value=2.2e+02 Score=19.74 Aligned_cols=18 Identities=22% Similarity=0.023 Sum_probs=14.5
Q ss_pred hHHHHHHhhhchhhHHHH
Q 020347 212 VPAKVAFDQTAWAAAWNS 229 (327)
Q Consensus 212 v~~KVllDQtV~sPv~~~ 229 (327)
.++.+++||-+++-+-|.
T Consensus 24 ~ik~~LlDQ~~iaGiGN~ 41 (89)
T d1ee8a1 24 PLKALLLDQRLAAGVGNI 41 (89)
T ss_dssp BHHHHHHHSSSSTTCCHH
T ss_pred cHHHHHHhccccCCCCcH
Confidence 478899999998887553
No 10
>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}
Probab=2.40 E-value=4.9e+02 Score=19.15 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheeec
Q 020347 124 LIDRTINATIVLAVGTFAITKLLTID 149 (327)
Q Consensus 124 i~~~tiqaai~l~a~snvlaQ~~tiD 149 (327)
-+..+|+.-+-.-|+--|++|+-+.|
T Consensus 9 d~ak~L~~yfTy~AvrvVl~Ql~e~n 34 (115)
T d2peoa1 9 DTAKTLQSYLTYQALRTVLAQLGETN 34 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34567777777888889999997765
Done!