Query 020348
Match_columns 327
No_of_seqs 191 out of 423
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 4E-24 8.6E-29 158.1 7.1 50 131-180 1-50 (51)
2 PLN03162 golden-2 like transcr 99.9 5.5E-24 1.2E-28 208.2 8.6 65 44-109 230-294 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.9 9.5E-22 2.1E-26 146.8 6.3 56 49-104 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.4 0.00026 5.6E-09 49.9 4.5 48 51-102 1-48 (48)
5 PF14379 Myb_CC_LHEQLE: MYB-CC 91.3 0.42 9.1E-06 36.2 4.5 39 144-183 4-43 (51)
6 smart00426 TEA TEA domain. 85.9 0.92 2E-05 36.1 3.3 18 53-70 5-22 (68)
7 smart00717 SANT SANT SWI3, AD 78.3 5.8 0.00013 25.8 4.5 44 52-101 2-46 (49)
8 PF15235 GRIN_C: G protein-reg 76.6 1.8 3.9E-05 38.5 2.2 19 153-171 71-89 (137)
9 PF01519 DUF16: Protein of unk 75.6 10 0.00022 32.4 6.3 34 147-183 64-97 (102)
10 cd00167 SANT 'SWI3, ADA2, N-Co 73.7 8.3 0.00018 24.8 4.3 43 53-101 1-44 (45)
11 TIGR02894 DNA_bind_RsfA transc 71.3 40 0.00087 30.9 9.4 52 46-103 43-94 (161)
12 PF12776 Myb_DNA-bind_3: Myb/S 57.6 35 0.00075 26.3 5.6 51 53-103 1-63 (96)
13 smart00501 BRIGHT BRIGHT, ARID 50.5 16 0.00035 28.8 2.8 47 56-103 32-85 (93)
14 COG5665 NOT5 CCR4-NOT transcri 42.0 1.2E+02 0.0026 31.9 8.1 29 134-167 117-145 (548)
15 PRK10803 tol-pal system protei 29.0 1.7E+02 0.0037 27.7 6.4 42 139-180 54-95 (263)
16 PF07384 DUF1497: Protein of u 28.5 49 0.0011 25.7 2.2 21 52-72 36-56 (59)
17 PHA03185 UL14 tegument protein 24.8 2.6E+02 0.0057 26.9 6.7 19 153-171 82-100 (214)
18 KOG4709 Uncharacterized conser 24.4 6.3E+02 0.014 24.4 9.1 26 156-181 65-90 (217)
19 cd08783 Death_MALT1 Death doma 23.6 93 0.002 26.6 3.2 49 49-101 35-84 (97)
20 KOG3841 TEF-1 and related tran 23.3 89 0.0019 32.6 3.6 21 50-70 75-95 (455)
21 cd07645 I-BAR_IMD_BAIAP2L1 Inv 20.6 4E+02 0.0087 25.8 7.1 45 131-175 63-116 (226)
22 PF08127 Propeptide_C1: Peptid 20.2 48 0.001 23.7 0.7 35 58-99 1-35 (41)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.90 E-value=4e-24 Score=158.08 Aligned_cols=50 Identities=76% Similarity=1.068 Sum_probs=47.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 020348 131 GMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLS 180 (327)
Q Consensus 131 g~qitEALrlQmEVQrrLhEQLEVQR~LQLRIEaQGKYLq~iLEkqq~l~ 180 (327)
||+|+|||++||||||||||||||||+||+|||||||||++|||+|++..
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~ 50 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKAL 50 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999998754
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.90 E-value=5.5e-24 Score=208.16 Aligned_cols=65 Identities=46% Similarity=0.678 Sum_probs=60.1
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhccCCC
Q 020348 44 PSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPD 109 (327)
Q Consensus 44 ~~~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~p~ 109 (327)
....+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.+++..
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~ 294 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA 294 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence 345789999999999999999999999 79999999999999999999999999999999877533
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.85 E-value=9.5e-22 Score=146.83 Aligned_cols=56 Identities=61% Similarity=0.981 Sum_probs=54.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (327)
Q Consensus 49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (327)
|+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.41 E-value=0.00026 Score=49.88 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=40.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhH
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (327)
|..||++-+..|++||.++|.- .-+.|-+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 5689999999999999999932 5678999998 7899999999999985
No 5
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=91.30 E-value=0.42 Score=36.16 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-Hhccc
Q 020348 144 VQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQR-LSGVL 183 (327)
Q Consensus 144 VQrrLhEQLEVQR~LQLRIEaQGKYLq~iLEkqq~-l~g~~ 183 (327)
+=..|..|+||||.|.=.+|.| |-||.-+|.+.+ +...+
T Consensus 4 i~EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~~il 43 (51)
T PF14379_consen 4 ITEALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQSIL 43 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHH
Confidence 3367889999999999999998 778887887755 44433
No 6
>smart00426 TEA TEA domain.
Probab=85.90 E-value=0.92 Score=36.14 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=16.4
Q ss_pred ccCHHHHHHHHHHHHHhC
Q 020348 53 RWTHELHERFVDAVAQLG 70 (327)
Q Consensus 53 rWT~ELH~rFV~AV~qLG 70 (327)
.|.++|-..|++|+..+-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 699999999999998875
No 7
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=78.25 E-value=5.8 Score=25.84 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=33.7
Q ss_pred cccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 52 LRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 52 LrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
-.||++=...|+.+|.++| +-. +.|-+.|+ +-|...|+.+...+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w----~~Ia~~~~--~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNW----EKIAKELP--GRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCH----HHHHHHcC--CCCHHHHHHHHHHH
Confidence 4699999999999999999 433 46666665 77888888775543
No 8
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=76.61 E-value=1.8 Score=38.53 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 020348 153 EVQRQLQLRIEAQGKYLKK 171 (327)
Q Consensus 153 EVQR~LQLRIEaQGKYLq~ 171 (327)
.||+||+++||+|++.+..
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 5899999999999875543
No 9
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=75.64 E-value=10 Score=32.43 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 020348 147 RLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVL 183 (327)
Q Consensus 147 rLhEQLEVQR~LQLRIEaQGKYLq~iLEkqq~l~g~~ 183 (327)
++-||+ +.||.+|.+||+-|++|++.-+.+...|
T Consensus 64 ~QGEqI---kel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 64 KQGEQI---KELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 8899999999999999999776655443
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=73.72 E-value=8.3 Score=24.83 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=33.3
Q ss_pred ccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 53 RWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 53 rWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
.||.+=+..|+.++.++| +. =+.|-+.|+ +=|..+|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~----w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNN----WEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCC----HHHHHhHcC--CCCHHHHHHHHHHh
Confidence 499999999999999999 43 346777764 47888888876553
No 11
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.29 E-value=40 Score=30.89 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=38.5
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
++....|||+..+-..+.+||..-- -.+-.++.. ...||+.+|-+-||.|..
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 4567899999999999999997643 122222221 256999999999999874
No 12
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=57.60 E-value=35 Score=26.27 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHHHHH---hCCC-CCCCchh-----hhhhcCC---CCccHHHHHHHHHHhHh
Q 020348 53 RWTHELHERFVDAVAQ---LGGP-DRATPKG-----VLRVMGV---QGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 53 rWT~ELH~rFV~AV~q---LGG~-dkAtPK~-----IL~lM~V---~GLT~~hVKSHLQKYRl 103 (327)
+||++..+-||+.+-+ .|.- .....|. |.+.|+- -.+|..||++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 5999999999998833 3433 2334433 4444442 45788999999875543
No 13
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=50.53 E-value=16 Score=28.84 Aligned_cols=47 Identities=26% Similarity=0.425 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCC----chhhhhhcCCCCc---cHHHHHHHHHHhHh
Q 020348 56 HELHERFVDAVAQLGGPDRAT----PKGVLRVMGVQGL---TIYHVKSHLQKYRL 103 (327)
Q Consensus 56 ~ELH~rFV~AV~qLGG~dkAt----PK~IL~lM~V~GL---T~~hVKSHLQKYRl 103 (327)
-+|+.-|. +|..+||.+..+ =+.|.+.||++.- ...++++|-+||=+
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 47999998 589999987544 2457888998752 35578888888743
No 14
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=42.01 E-value=1.2e+02 Score=31.89 Aligned_cols=29 Identities=38% Similarity=0.455 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020348 134 ITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGK 167 (327)
Q Consensus 134 itEALrlQmEVQrrLhEQLEVQR~LQLRIEaQGK 167 (327)
|..+|- |+||+| ||+|.| .|.-|||.|.-
T Consensus 117 i~~~~~---el~~q~-e~~ea~-e~e~~~erh~~ 145 (548)
T COG5665 117 IHDCLD---ELQKQL-EQYEAQ-ENEEQTERHEF 145 (548)
T ss_pred HHHHHH---HHHHHH-HHHHHH-HhHHHHHHHHH
Confidence 344443 778777 788888 67788888743
No 15
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.96 E-value=1.7e+02 Score=27.72 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 020348 139 KLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLS 180 (327)
Q Consensus 139 rlQmEVQrrLhEQLEVQR~LQLRIEaQGKYLq~iLEkqq~l~ 180 (327)
++|+|+|.+|.+.=.=-+.|.=.||.+..-|+.|.++|..+.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 455677777644322224566689999999999999887654
No 16
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=28.46 E-value=49 Score=25.67 Aligned_cols=21 Identities=24% Similarity=0.649 Sum_probs=18.7
Q ss_pred cccCHHHHHHHHHHHHHhCCC
Q 020348 52 LRWTHELHERFVDAVAQLGGP 72 (327)
Q Consensus 52 LrWT~ELH~rFV~AV~qLGG~ 72 (327)
-.+..|+|..|-+-|..|||-
T Consensus 36 ~kfnqem~aefheri~klggk 56 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGK 56 (59)
T ss_pred hHhhHHHHHHHHHHHHHhccc
Confidence 357899999999999999984
No 17
>PHA03185 UL14 tegument protein; Provisional
Probab=24.82 E-value=2.6e+02 Score=26.87 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 020348 153 EVQRQLQLRIEAQGKYLKK 171 (327)
Q Consensus 153 EVQR~LQLRIEaQGKYLq~ 171 (327)
|-|..+..=++++.+||+.
T Consensus 82 EeQ~a~r~iL~~hRRyL~p 100 (214)
T PHA03185 82 EEQAERRDFLIAHRRYLDP 100 (214)
T ss_pred HHHHHHHHHHHHHHHhcCh
Confidence 3344444556778899875
No 18
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.35 E-value=6.3e+02 Score=24.38 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhc
Q 020348 156 RQLQLRIEAQGKYLKKIIEEQQRLSG 181 (327)
Q Consensus 156 R~LQLRIEaQGKYLq~iLEkqq~l~g 181 (327)
+++.+|-+-...|+.+|-|.-..+.+
T Consensus 65 erielRk~~rqerkr~LeErl~af~e 90 (217)
T KOG4709|consen 65 ERIELRKERRQERKRMLEERLEAFEE 90 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666666676655443333333
No 19
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=23.62 E-value=93 Score=26.58 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=38.8
Q ss_pred CCCcccCH-HHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 49 KQRLRWTH-ELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 49 KpRLrWT~-ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
..|||-++ ||+++-...+..-| .--|.+|+.|++.|-|+.++-.-||+-
T Consensus 35 ~~~fr~S~~el~~cslkvl~p~g----SPsk~LL~~~~~rg~Tv~~Ll~~L~~M 84 (97)
T cd08783 35 RGRFRLSCLDLEQCSLKVLEPEG----SPSRSLLKLLGERGCTVTELSEFLQAM 84 (97)
T ss_pred CCccccCHHHHHHHHHHHhcCCC----CchHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 45888887 78888877776655 334688999999999999998888863
No 20
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=23.30 E-value=89 Score=32.62 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=17.7
Q ss_pred CCcccCHHHHHHHHHHHHHhC
Q 020348 50 QRLRWTHELHERFVDAVAQLG 70 (327)
Q Consensus 50 pRLrWT~ELH~rFV~AV~qLG 70 (327)
..=+|.++.-+.|.||+..+-
T Consensus 75 aegvWSpdIEqsFqEALaiyp 95 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYP 95 (455)
T ss_pred cccccChhHHHHHHHHHhhcC
Confidence 344899999999999998764
No 21
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=20.57 E-value=4e+02 Score=25.84 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=34.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHHH
Q 020348 131 GMQITEALKLQMEVQKRLHEQLEV---------QRQLQLRIEAQGKYLKKIIEE 175 (327)
Q Consensus 131 g~qitEALrlQmEVQrrLhEQLEV---------QR~LQLRIEaQGKYLq~iLEk 175 (327)
+..|..+|.-=-||+|+++.|||. =.+|.-.+|..-||+...+++
T Consensus 63 SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kk 116 (226)
T cd07645 63 SKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKR 116 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776556888888888873 457888999999999976553
No 22
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=20.19 E-value=48 Score=23.74 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHH
Q 020348 58 LHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ 99 (327)
Q Consensus 58 LH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQ 99 (327)
|-+.|++-|+...-.++|..- .++.|+.+|+..|-
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlG 35 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLG 35 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcC
Confidence 457899999999777777543 46777777776553
Done!