Query 020348
Match_columns 327
No_of_seqs 191 out of 423
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 3.6E-29 1.2E-33 190.6 6.9 61 46-107 2-62 (64)
2 2yus_A SWI/SNF-related matrix- 93.3 0.16 5.3E-06 39.2 5.7 50 48-103 15-64 (79)
3 2yum_A ZZZ3 protein, zinc fing 92.1 0.24 8.4E-06 36.7 5.2 53 49-104 6-61 (75)
4 2cu7_A KIAA1915 protein; nucle 91.9 0.28 9.6E-06 36.4 5.4 52 48-105 6-57 (72)
5 1x41_A Transcriptional adaptor 90.7 0.44 1.5E-05 34.2 5.2 50 48-103 5-55 (60)
6 2iw5_B Protein corest, REST co 89.3 0.37 1.3E-05 44.6 4.8 52 46-103 128-179 (235)
7 2xag_B REST corepressor 1; ami 88.2 0.6 2E-05 46.9 5.7 52 47-104 376-427 (482)
8 1ity_A TRF1; helix-turn-helix, 87.3 1.9 6.6E-05 31.4 6.7 54 46-103 5-59 (69)
9 2cqq_A RSGI RUH-037, DNAJ homo 86.3 1.2 4.2E-05 33.8 5.2 47 52-104 9-58 (72)
10 2elk_A SPCC24B10.08C protein; 83.8 2.2 7.7E-05 30.4 5.5 48 51-103 9-57 (58)
11 2cqr_A RSGI RUH-043, DNAJ homo 82.6 5.5 0.00019 30.3 7.5 49 51-102 18-67 (73)
12 2hzd_A Transcriptional enhance 81.1 2.6 9.1E-05 33.4 5.4 57 49-107 4-77 (82)
13 3sjm_A Telomeric repeat-bindin 81.0 2.4 8.4E-05 31.1 4.9 49 48-100 8-57 (64)
14 2d9a_A B-MYB, MYB-related prot 79.8 3.7 0.00013 29.0 5.4 48 48-101 5-53 (60)
15 2dim_A Cell division cycle 5-l 71.7 7.5 0.00026 28.3 5.3 49 47-101 5-54 (70)
16 2yqk_A Arginine-glutamic acid 71.6 4.3 0.00015 29.6 3.9 54 46-107 4-57 (63)
17 1guu_A C-MYB, MYB proto-oncoge 70.8 10 0.00035 25.8 5.5 46 51-101 3-48 (52)
18 1w0t_A Telomeric repeat bindin 70.1 7.8 0.00027 26.8 4.9 47 51-101 2-49 (53)
19 2ba2_A D12_ORF131, hypothetica 68.8 13 0.00045 29.8 6.4 45 134-181 34-78 (85)
20 2eqr_A N-COR1, N-COR, nuclear 68.0 6.1 0.00021 28.4 4.0 46 46-97 7-52 (61)
21 2cjj_A Radialis; plant develop 67.6 8.4 0.00029 30.6 5.1 47 53-102 10-57 (93)
22 1gvd_A MYB proto-oncogene prot 63.3 16 0.00056 24.8 5.4 46 51-101 3-48 (52)
23 1wgx_A KIAA1903 protein; MYB D 61.9 12 0.0004 28.8 4.8 46 53-101 10-56 (73)
24 4eef_G F-HB80.4, designed hema 61.4 3.1 0.00011 32.5 1.5 44 53-99 22-66 (74)
25 2aje_A Telomere repeat-binding 53.6 19 0.00065 29.2 4.9 52 46-101 8-62 (105)
26 2din_A Cell division cycle 5-l 47.6 26 0.00091 25.0 4.5 48 49-103 7-54 (66)
27 2crg_A Metastasis associated p 42.9 25 0.00084 26.2 3.8 47 47-98 4-50 (70)
28 2k9n_A MYB24; R2R3 domain, DNA 40.4 37 0.0013 26.3 4.6 46 51-102 53-98 (107)
29 1gv2_A C-MYB, MYB proto-oncoge 38.9 46 0.0016 25.4 4.9 45 51-101 56-100 (105)
30 2roh_A RTBP1, telomere binding 37.2 1.8E+02 0.0061 24.1 8.5 52 46-101 26-80 (122)
31 2da3_A Alpha-fetoprotein enhan 37.0 99 0.0034 22.3 6.2 61 44-107 14-74 (80)
32 3osg_A MYB21; transcription-DN 36.1 61 0.0021 25.9 5.4 51 52-108 63-113 (126)
33 2ltp_A Nuclear receptor corepr 40.1 8.7 0.0003 29.6 0.0 49 49-103 14-62 (89)
34 1gv2_A C-MYB, MYB proto-oncoge 32.3 87 0.003 23.8 5.5 46 51-101 4-49 (105)
35 1h8a_C AMV V-MYB, MYB transfor 32.0 46 0.0016 26.5 4.0 44 51-100 79-122 (128)
36 3zqc_A MYB3; transcription-DNA 31.8 62 0.0021 25.9 4.8 46 53-104 56-101 (131)
37 3osg_A MYB21; transcription-DN 30.8 1E+02 0.0036 24.4 6.0 50 47-102 7-56 (126)
38 2ckx_A NGTRF1, telomere bindin 28.9 68 0.0023 24.7 4.4 45 53-101 2-49 (83)
39 3zqc_A MYB3; transcription-DNA 26.7 92 0.0031 24.9 4.9 44 53-102 4-48 (131)
40 2juh_A Telomere binding protei 26.6 61 0.0021 26.9 3.9 53 46-102 12-67 (121)
41 2kes_A Synphilin-1; synphillin 26.5 1.3E+02 0.0046 21.6 5.1 23 143-165 15-41 (48)
42 2li6_A SWI/SNF chromatin-remod 26.0 11 0.00038 30.3 -0.7 45 56-103 49-97 (116)
43 2k9n_A MYB24; R2R3 domain, DNA 25.8 1.3E+02 0.0045 23.1 5.6 45 52-101 2-46 (107)
44 2lm1_A Lysine-specific demethy 25.0 25 0.00086 27.4 1.2 46 56-102 44-95 (107)
45 3kdq_A Uncharacterized conserv 22.9 81 0.0028 27.0 4.1 19 130-148 2-20 (154)
46 1kkx_A Transcription regulator 22.8 21 0.00071 29.3 0.4 46 56-104 48-97 (123)
47 1h89_C C-MYB, MYB proto-oncoge 22.4 1E+02 0.0034 25.3 4.5 45 50-100 109-153 (159)
48 1c20_A DEAD ringer protein; DN 21.9 30 0.001 28.1 1.2 47 56-103 52-105 (128)
49 2cxy_A BAF250B subunit, HBAF25 21.7 30 0.001 28.0 1.2 45 56-101 51-101 (125)
50 1h8a_C AMV V-MYB, MYB transfor 21.6 2E+02 0.0069 22.7 6.0 47 50-101 26-72 (128)
51 2eqy_A RBP2 like, jumonji, at 21.5 32 0.0011 27.9 1.3 47 56-103 42-94 (122)
52 3ok8_A Brain-specific angiogen 20.6 2.2E+02 0.0074 25.9 6.6 43 132-174 71-122 (222)
53 3b73_A PHIH1 repressor-like pr 20.1 1.4E+02 0.0049 23.8 4.8 50 51-104 7-56 (111)
54 4a69_C Nuclear receptor corepr 20.0 59 0.002 25.4 2.5 41 49-95 41-81 (94)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=3.6e-29 Score=190.56 Aligned_cols=61 Identities=49% Similarity=0.750 Sum_probs=57.6
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhccC
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 107 (327)
+.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+...+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999 799999999999999999999999999999997543
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=93.32 E-value=0.16 Score=39.18 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=40.9
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 48 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
...+-.||.+=+.+|++||..+|+-+ +.|-+.|+ +=|..+++.|-++|-+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W----~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDW----NKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCH----HHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCH----HHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 34567899999999999999999544 46777765 7999999999988733
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.05 E-value=0.24 Score=36.70 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=39.9
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCch---hhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348 49 KQRLRWTHELHERFVDAVAQLGGPDRATPK---GVLRVMGVQGLTIYHVKSHLQKYRLA 104 (327)
Q Consensus 49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (327)
..+-.||.|=+++|+++|..+| .+...|. .|-+.| +|=|..+|+.|.++|-..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 4455899999999999999999 2221122 344444 689999999999999654
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.91 E-value=0.28 Score=36.36 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=41.1
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhc
Q 020348 48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105 (327)
Q Consensus 48 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k 105 (327)
...+-.||.|-++.|+++|.++|- .=+.|-+. ++|=|-.+|+.|.++|-..+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 345668999999999999999994 22456565 47899999999999995543
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=90.68 E-value=0.44 Score=34.21 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=40.2
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 48 ~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
.-.|-.||+|-.+++++||..+| +-+ +.|-+.| +|=|-.+++.|-++|-+
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNW----QDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCH----HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcH----HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34556799999999999999999 433 3666666 67899999999988754
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=89.30 E-value=0.37 Score=44.65 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=42.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
...+..-+||++=+..|++|+..+|--+ ..|-++ |++=|..+|+.|..+||.
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGKDW----~~IAk~--VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGRDF----QAISDV--IGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSSCH----HHHHHH--HSSCCHHHHHHHHHHTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCcCH----HHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 3457788999999999999999999432 366666 568999999999999874
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=88.16 E-value=0.6 Score=46.93 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=43.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (327)
Q Consensus 47 ~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (327)
..+..-+||.+=|..|++||.+.|-- =+.|-+.++- -|..+|++|.++||..
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgT--KT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGN--KSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 34677899999999999999999943 3477777665 6999999999999764
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=87.35 E-value=1.9 Score=31.44 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=43.9
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
..++.|-.||+|--+..+++|.++| |-+ +.|.+.|+..|=|-.+++.+-..|--
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCH----HHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcH----HHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 3567888999999999999999999 444 47888887558899999988777644
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.29 E-value=1.2 Score=33.78 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=37.3
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCCchh---hhhhcCCCCccHHHHHHHHHHhHhh
Q 020348 52 LRWTHELHERFVDAVAQLGGPDRATPKG---VLRVMGVQGLTIYHVKSHLQKYRLA 104 (327)
Q Consensus 52 LrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (327)
-.||.|=+.+|+.|+..++ .-||.+ |-+.| |=|..+|+.|-+++.-.
T Consensus 9 ~~WT~eE~k~fe~al~~~p---~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFP---GGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 3699999999999999998 335665 44555 68999999998887544
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=83.85 E-value=2.2 Score=30.39 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=37.6
Q ss_pred CcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
+-.||++-.+++++||.++| +-+. .|-+.|+. |=|..+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~----~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWA----DIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHH----HHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHH----HHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999999 4443 56666542 6899999999888754
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=82.59 E-value=5.5 Score=30.28 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=38.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHHHhH
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYR 102 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYR 102 (327)
+-.||.+=...|++||..+| +-+|.+--++-. |+|=|-.+|+.|.+.+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34699999999999999998 236766544433 57999999999988764
No 12
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=81.11 E-value=2.6 Score=33.40 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=37.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhh---hc-C-----------C--CCccHHHHHHHHHHhHhhccC
Q 020348 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLR---VM-G-----------V--QGLTIYHVKSHLQKYRLAKYL 107 (327)
Q Consensus 49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~---lM-~-----------V--~GLT~~hVKSHLQKYRl~k~~ 107 (327)
+..-+|.++|-..|++|+..+--....+ -+|. .| | . .-=|+.+|.||||.-|..+.+
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 4456899999999999998875222332 2231 11 1 1 234777899999998776543
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=80.99 E-value=2.4 Score=31.11 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=37.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHH
Q 020348 48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQK 100 (327)
Q Consensus 48 ~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQK 100 (327)
.+.|-.||+|--++.+++|.++| |-+ +.|.+.+++.|=|-.+++-+-..
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~n 57 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNW----AAISKNYPFVNRTAVMIKDRWRT 57 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCch----HHHHhhcCCCCCCHHHHHHHHHH
Confidence 34566899999999999999999 333 37888888888888888865433
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=79.80 E-value=3.7 Score=28.97 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=37.7
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 48 ~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
...|-.||+|=.++++++|.++| +-+ +.|-+.| +|=|-.+++.|-.+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDW----KFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCH----HHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCH----HHHHHHc--cCCCHHHHHHHHHHH
Confidence 45677899999999999999999 333 3565665 678889998887765
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.67 E-value=7.5 Score=28.27 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=39.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 47 ASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 47 ~~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
+...|=.||++=.++++++|.++| +-. +.|-+.|+ |=|-.+++-|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQW----SRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCH----HHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHhc--CCCHHHHHHHHHHH
Confidence 345667899999999999999999 333 46777765 78999999887776
No 16
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.60 E-value=4.3 Score=29.61 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=34.9
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhccC
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 107 (327)
.+...+-.||++=|..|.+|+.+.|= + =..|-+.| |+.-|..+|. +-|=+-|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v---~fYY~wKkt 57 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELI---TFYYYWKKT 57 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHH---HHHHHHHCS
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHH---HHHhcccCC
Confidence 34455679999999999999999992 1 12333311 5667777775 344444443
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=70.81 E-value=10 Score=25.83 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=35.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
|-.||+|=..+++++|.++|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999993 1224566665 588999999887766
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=70.10 E-value=7.8 Score=26.76 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=36.7
Q ss_pred CcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
|-.||+|-.+..+++|..+| |-. +.|.+.|+..|=|-.+++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45799999999999999999 433 467788765577888888765554
No 19
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=68.84 E-value=13 Score=29.77 Aligned_cols=45 Identities=31% Similarity=0.422 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 020348 134 ITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSG 181 (327)
Q Consensus 134 itEALrlQmEVQrrLhEQLEVQR~LQLRIEaQGKYLq~iLEkqq~l~g 181 (327)
|.+.|..|-|-=+.--||+ +.||+-+.|||+-|+.|++.-+.+..
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~~~nk 78 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQGINK 78 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777766555556666 88999999999999999987665543
No 20
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.95 E-value=6.1 Score=28.44 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=34.5
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHH
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSH 97 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 97 (327)
..++..-.||++=|+.|++|+.+.|--+ ..|-++ +++-|..+|.-|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~w----~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPKNF----GLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTTCH----HHHHHH--CTTSCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHH
Confidence 4567778999999999999999998311 345444 567888887644
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=67.58 E-value=8.4 Score=30.55 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=36.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHHHhH
Q 020348 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYR 102 (327)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYR 102 (327)
.||.+=...|++|+..+| +-+|.+--++=. |+|=|-.+|+.|-+++.
T Consensus 10 ~WT~eEd~~L~~al~~~~---~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYD---KDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp SCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999998 225654432222 47999999999998874
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=63.26 E-value=16 Score=24.85 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=34.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
+-.||+|=.++++++|.++|.- .=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 4479999999999999999931 113455554 688889998887765
No 23
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=61.93 E-value=12 Score=28.83 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHHHh
Q 020348 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKY 101 (327)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKY 101 (327)
.||.+=..+|..|+..++ +.+|-+-.++-. |+|=|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999999999986 557876655433 7889999999776554
No 24
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=61.42 E-value=3.1 Score=32.54 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHH
Q 020348 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQ 99 (327)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQ 99 (327)
.||.+=.+.|..|+..++ +-||.+--++-. |||-|...|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 499999999999998875 667877665544 68999999998855
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=53.56 E-value=19 Score=29.23 Aligned_cols=52 Identities=21% Similarity=0.140 Sum_probs=40.5
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCC-CCCCCchhhhhhcC--CCCccHHHHHHHHHHh
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKY 101 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKY 101 (327)
..++.|-.||+|--+..+++|.++|. -++ .|++.+. .+|=|-.++|.+...+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~----~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWR----DVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHH----HHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChH----HHHHHhccccCCCCHHHHHHHHHHH
Confidence 46788999999999999999999993 444 6777653 4889999999654443
No 26
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.61 E-value=26 Score=25.00 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=37.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
..+-.||.|=.++++++|..+|.- =..|-++| |=|-.+++.|-+.|--
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~----W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQ----WRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTC----HHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC----HHHHhccc---CcCHHHHHHHHHHHhC
Confidence 445579999999999999999842 24566644 5899999999988844
No 27
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=42.91 E-value=25 Score=26.15 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=32.7
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHH
Q 020348 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHL 98 (327)
Q Consensus 47 ~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHL 98 (327)
.++..-.||++=+..|.+|+...|= + =..|-+. =|++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-D---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHH-HcCCCCHHHHHHHH
Confidence 3466778999999999999999992 1 1233331 15678888776554
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=40.36 E-value=37 Score=26.32 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=36.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhH
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (327)
+-.||+|=...++++|.++|.-. ..|-+.| +|=|-.+|+.|-..+.
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKW----NKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCH----HHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCH----HHHHHHC--CCCCHHHHHHHHHHHH
Confidence 45799999999999999999422 3566655 7899999998876653
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=38.85 E-value=46 Score=25.40 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=35.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
+-.||+|=...++++|.++|.-. ..|-+. ++|=|-.+|+.|-..+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCH----HHHHTT--CTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHHHHHH
Confidence 45799999999999999999422 255554 4799999999886543
No 30
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=37.19 E-value=1.8e+02 Score=24.12 Aligned_cols=52 Identities=27% Similarity=0.221 Sum_probs=40.3
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhc--CCCCccHHHHHHHHHHh
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVM--GVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM--~V~GLT~~hVKSHLQKY 101 (327)
..++.|-.||.|--+..+++|.++| |-+. .|++.+ ..+|=|-.++|.+...+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~----~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWR----DVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHH----HHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChH----HHHHHhccccCCCCHHHHHHHHHHH
Confidence 4578889999999999999999999 3444 677754 24888999999654443
No 31
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=36.99 E-value=99 Score=22.29 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhccC
Q 020348 44 PSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107 (327)
Q Consensus 44 ~~~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 107 (327)
+...++.|.++|.+-. ..++.+.... ...++..+.++...-|||..+|+-=.|.-|...++
T Consensus 14 ~~~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 14 PQRDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCCCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 4456777888888733 2344444443 34555566666667789999999999988876443
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=36.14 E-value=61 Score=25.86 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=38.5
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhccCC
Q 020348 52 LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108 (327)
Q Consensus 52 LrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~p 108 (327)
-.||+|=.+.++++|.++|.-+ ..|-+. ++|=|-.+|+.|...+......|
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGRQW----AIIAKF--FPGRTDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCH----HHHHTT--STTCCHHHHHHHHHHHHHHTTC-
T ss_pred ccCCHHHHHHHHHHHHHHCcCH----HHHHHH--cCCCCHHHHHHHHHHHHHhcCCC
Confidence 3699999999999999999533 355554 47999999999987665544443
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=40.08 E-value=8.7 Score=29.65 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=37.0
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
-.+=.||+|=.+.|+++|..+|--+. .|-+. ++|=|-.+|+.|...|.-
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~----~IA~~--l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWS----AIARM--VGSKTVSQCKNFYFNYKK 62 (89)
Confidence 34557999999999999999994332 44444 468888999988777643
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=32.30 E-value=87 Score=23.81 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=35.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
+-.||+|=-++++++|..+|.- .=+.|-+.| +|=|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 3479999999999999999941 123566665 688999998877665
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=32.04 E-value=46 Score=26.47 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=34.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHH
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQK 100 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQK 100 (327)
+-.||+|-...++++|.++|.-. ..|-+.| +|=|-.+|+.|...
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~r~~~ 122 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRW----AEIAKLL--PGRTDNAVKNHWNS 122 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCH----HHHGGGS--TTCCHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHCcCH----HHHHHHC--CCCCHHHHHHHHHH
Confidence 45799999999999999999422 3555554 78999999988653
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=31.79 E-value=62 Score=25.93 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (327)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (327)
.||+|=...++++|.++|.-. ..|-+. ++|=|-.+|+.|...|-..
T Consensus 56 ~Wt~eEd~~L~~~~~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKLGSKW----SVIAKL--IPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCCHHHHHHHHHHHHHSCSCH----HHHTTT--STTCCHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHHCcCH----HHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 699999999999999999533 345554 4689999999987766443
No 37
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=30.79 E-value=1e+02 Score=24.45 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=38.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhH
Q 020348 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (327)
Q Consensus 47 ~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (327)
....|-.||+|--++++++|.++|. .=+.|-+.| +|=|..+++.+-..|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 4567778999999999999999994 234666665 4778888887776654
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=28.91 E-value=68 Score=24.72 Aligned_cols=45 Identities=22% Similarity=0.157 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHHHhCC-CCCCCchhhhhhcC--CCCccHHHHHHHHHHh
Q 020348 53 RWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKY 101 (327)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKY 101 (327)
.||+|-.+..+++|.++|. -++ .|++... ++|=|-.++|.+-..+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~----~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWR----DVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHH----HHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcH----HHHHhhccccCCCCHHHHHHHHHHH
Confidence 4999999999999999993 443 6766533 5788999999765554
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=26.66 E-value=92 Score=24.90 Aligned_cols=44 Identities=7% Similarity=0.002 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHhH
Q 020348 53 RWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (327)
Q Consensus 53 rWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (327)
.||+|--++.+++|...| +-. +.|-+.| +|=|..++..|-..|-
T Consensus 4 ~Wt~eED~~L~~~v~~~g~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKENGPQNW----PRITSFL--PNRSPKQCRERWFNHL 48 (131)
T ss_dssp SCCHHHHHHHHHHHHHHCSCCG----GGGTTSC--TTSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcCCH----HHHHHHH--CCCCHHHHHHHHhhcc
Confidence 699999999999999999 333 3555555 6788888887776653
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=26.56 E-value=61 Score=26.93 Aligned_cols=53 Identities=21% Similarity=0.126 Sum_probs=41.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCC-CCCCCchhhhhhcC--CCCccHHHHHHHHHHhH
Q 020348 46 LASKQRLRWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKYR 102 (327)
Q Consensus 46 ~~~KpRLrWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKYR 102 (327)
..++.|-.||+|--+..+++|.++|. -+. .|++.+. .+|=|-.++|.+...+-
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~----~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWR----DVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHH----HHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHH----HHHHHhccccCCCCHHHHHHHHHHHH
Confidence 45788899999999999999999993 443 7877765 47889999997655543
No 41
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=26.52 E-value=1.3e+02 Score=21.59 Aligned_cols=23 Identities=48% Similarity=0.598 Sum_probs=15.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHh
Q 020348 143 EVQKRLHEQ----LEVQRQLQLRIEAQ 165 (327)
Q Consensus 143 EVQrrLhEQ----LEVQR~LQLRIEaQ 165 (327)
.+-|+|+|| +.+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455677777 45677777777776
No 42
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.95 E-value=11 Score=30.27 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348 56 HELHERFVDAVAQLGGPDRATP----KGVLRVMGVQGLTIYHVKSHLQKYRL 103 (327)
Q Consensus 56 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT~~hVKSHLQKYRl 103 (327)
-+|+.-|.. |..+||.++.+- +.|.+.||++. -..++.|-.||=+
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 478888875 788999877554 35688899987 5678887777744
No 43
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=25.79 E-value=1.3e+02 Score=23.12 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=33.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 52 LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 52 LrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
-.||+|--++++++|..+|.- .=+.|-+.|+ |=|..++..+-..|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMI--TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcC--CCCHHHHHHHHHHH
Confidence 479999999999999999931 1235666664 77888887665554
No 44
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.97 E-value=25 Score=27.44 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhhhhhcCCCCcc--HHHHHHHHHHhH
Q 020348 56 HELHERFVDAVAQLGGPDRATP----KGVLRVMGVQGLT--IYHVKSHLQKYR 102 (327)
Q Consensus 56 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKYR 102 (327)
-+|+.-|.. |..+||.++.+- +.|.+.||++.-| ...++.|-.||=
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L 95 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERIL 95 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 478988876 678999877653 3568889987633 245677666663
No 45
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=22.86 E-value=81 Score=27.01 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=17.0
Q ss_pred CCcchhHHHHHHHHHHHHH
Q 020348 130 SGMQITEALKLQMEVQKRL 148 (327)
Q Consensus 130 sg~qitEALrlQmEVQrrL 148 (327)
++|-+.|||.+--.+|||+
T Consensus 2 ~~MKLAEAL~lRadl~kri 20 (154)
T 3kdq_A 2 NAMYLAEALAQRVEAQRRY 20 (154)
T ss_dssp -CCBHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHH
Confidence 5788999999999999999
No 46
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=22.76 E-value=21 Score=29.29 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCch----hhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348 56 HELHERFVDAVAQLGGPDRATPK----GVLRVMGVQGLTIYHVKSHLQKYRLA 104 (327)
Q Consensus 56 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (327)
-+|+..|.. |..+||.++.+-+ .|.+.|+++. -..++.|-.||=+.
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 97 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHH
Confidence 468877765 7899999887753 5688899987 67788877777553
No 47
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=22.37 E-value=1e+02 Score=25.30 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=35.3
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHH
Q 020348 50 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQK 100 (327)
Q Consensus 50 pRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQK 100 (327)
.+-.||++=...++++|.++|.-. ..|-+. +||=|-.+|+.|...
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W----~~Ia~~--l~gRt~~~~knr~~~ 153 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAIKNHWNS 153 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCH----HHHHTT--STTCCHHHHHHHHHT
T ss_pred cccCCChHHHHHHHHHHHHHCCCH----HHHHHH--CCCCCHHHHHHHHHH
Confidence 456799999999999999999422 355554 579999999988654
No 48
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=21.89 E-value=30 Score=28.06 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhhhhhcCCCCc-c--HHHHHHHHHHhHh
Q 020348 56 HELHERFVDAVAQLGGPDRATP----KGVLRVMGVQGL-T--IYHVKSHLQKYRL 103 (327)
Q Consensus 56 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GL-T--~~hVKSHLQKYRl 103 (327)
-+||.-|.. |..+||.++.+- +.|.+.||++.- | ...++.|-.||=+
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 468888876 778999877553 356788998652 2 4667887777743
No 49
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=21.71 E-value=30 Score=28.01 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhhhhhcCCCCcc--HHHHHHHHHHh
Q 020348 56 HELHERFVDAVAQLGGPDRATP----KGVLRVMGVQGLT--IYHVKSHLQKY 101 (327)
Q Consensus 56 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKY 101 (327)
-+|+..|.. |..+||.++.+- +.|.+.||++.-| ...++.|-.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 468888875 778999876543 3578889998643 24566666665
No 50
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=21.63 E-value=2e+02 Score=22.65 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=35.2
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348 50 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (327)
Q Consensus 50 pRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (327)
.+-.||+|=-++++++|..+|.- .=+.|-+.| +|=|..+++.|-..|
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHL--KGRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHS--SSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHh--cCCcHHHHHHHHHHh
Confidence 45579999999999999999931 113566665 578888888776654
No 51
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.50 E-value=32 Score=27.89 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc----hhhhhhcCCCCcc--HHHHHHHHHHhHh
Q 020348 56 HELHERFVDAVAQLGGPDRATP----KGVLRVMGVQGLT--IYHVKSHLQKYRL 103 (327)
Q Consensus 56 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKYRl 103 (327)
-+|++-|.. |..+||.++.+- +.|.+.||++.-+ ...++.|-.||=+
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 368888875 788999877554 3568889986533 2467777777643
No 52
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=20.63 E-value=2.2e+02 Score=25.94 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=34.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHH
Q 020348 132 MQITEALKLQMEVQKRLHEQLEV---------QRQLQLRIEAQGKYLKKIIE 174 (327)
Q Consensus 132 ~qitEALrlQmEVQrrLhEQLEV---------QR~LQLRIEaQGKYLq~iLE 174 (327)
-+|..||.-=-|++|+|..+||. =..|+.+||...||++..+.
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777887556899999999874 45789999999999986543
No 53
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=20.12 E-value=1.4e+02 Score=23.76 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=40.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (327)
Q Consensus 51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (327)
+..|-...-++.++.+..-| .++|+.|-+.+++ |+|...|..||++-.-.
T Consensus 7 ~~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLADH 56 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHHT
T ss_pred hhhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Confidence 45688888889999887777 7889888886632 67999999999987654
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=20.05 E-value=59 Score=25.41 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=27.8
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHH
Q 020348 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVK 95 (327)
Q Consensus 49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVK 95 (327)
+..=.||++=|+.|.+++.+.|-- -..|-+.+ ++-|..++-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l--~~Kt~~~cV 81 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKN----FGLIASFL--ERKTVAECV 81 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTC----HHHHHHTC--TTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC----HHHHHHHc--CCCCHHHHH
Confidence 345679999999999999999821 24554443 455555443
Done!