Citrus Sinensis ID: 020351

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
ccccccccccccEEEEccccccHHHHHccccHHHHHHHHHHHHcccccccEEEcccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccHHcHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHccccEEEEEccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcc
ccEEEEccccEEEEEEccccccHHHHHHHccHHHHHHHHHcccccHHHcEEEccccccccccccHHHHEEEccHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccEHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHccccccEEEEEEEEcccccccccHHEcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccEEEccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHcccccccccccccHEEEcccccEEEcccccccccccc
meltsefrgseiielknfspasvddIASVHARAYVSGLEKAMDRASQQGIILiegsgptyatATTFQESLAAAGAGIALVDSVVAasknrpdpplgfalirppghhaipkgpmgfcvFGNVAIAARYAQRAHGLKRVFIIDfdvhhgngtndafyddpdifflsthqdgsypgtgkidevgrgdgegstlnlplpggsgdtaMRTVFHEVIVpcaqrfkpdlilvsagydahvldplaslqftTGTYYMLAANIKQLAKDLcgsrcvffleggynlnslsYSVADSFRaflgepskasefdnpailyeepsaKVKQAIERVKHIHSL
meltsefrgseiielknfspasvddIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
************IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAAS******PLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQ*********************************TAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLG***********************************
*******RGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMD*****GIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASE*********EPSAKVKQAIERVKHIHS*
MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIER*******
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MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query327 2.2.26 [Sep-21-2011]
Q941D6423 Histone deacetylase 14 OS yes no 0.996 0.770 0.794 1e-155
O30107359 Uncharacterized protein A yes no 0.935 0.852 0.376 2e-50
Q6P3E7 666 Histone deacetylase 10 OS yes no 0.813 0.399 0.373 3e-45
Q20296 955 Histone deacetylase 6 OS= no no 0.660 0.226 0.414 5e-45
Q969S8 669 Histone deacetylase 10 OS yes no 0.813 0.397 0.377 2e-44
O27262331 Uncharacterized protein M yes no 0.804 0.794 0.382 2e-44
P53973 706 Histone deacetylase HDA1 yes no 0.889 0.412 0.323 5e-43
Q9Z2V5 1149 Histone deacetylase 6 OS= no no 0.807 0.229 0.373 4e-42
P830381080 Histone deacetylase 4 OS= yes no 0.730 0.221 0.395 1e-41
Q70I53369 Histone deacetylase-like N/A no 0.816 0.723 0.346 2e-41
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1 Back     alignment and function desciption
 Score =  548 bits (1411), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/326 (79%), Positives = 291/326 (89%)

Query: 2   ELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYA 61
           ELT +FRGS+I+EL NF  A+V+DIA+VH +AYV GLEKAMD AS  G+I IEGSGPTYA
Sbjct: 98  ELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGSGPTYA 157

Query: 62  TATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNV 121
           T+TTFQ+SL AAGAG+ALVDSV+AAS+N  DPP+GFALIRPPGHHA+PKGPMGFCVFGNV
Sbjct: 158 TSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNV 217

Query: 122 AIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVG 181
           AIAAR+AQR HGLKR+FIIDFDVHHGNGTNDAF +DPDIFFLSTHQDGSYPGTGKI ++G
Sbjct: 218 AIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSYPGTGKISDIG 277

Query: 182 RGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQ 241
           +G GEG+TLNLPLPGGSGD AMRTVF E+IVPCAQRFKPD+ILVSAGYDAHVLDPLA+LQ
Sbjct: 278 KGKGEGTTLNLPLPGGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAHVLDPLANLQ 337

Query: 242 FTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD 301
           FTT TYY LA +IK+LAK++CG RCVFFLEGGYNL SLS SVADSFRA LGE S ASEFD
Sbjct: 338 FTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGEDSLASEFD 397

Query: 302 NPAILYEEPSAKVKQAIERVKHIHSL 327
           NPA LY+EP  KV+ AI+R K IH L
Sbjct: 398 NPAYLYDEPMRKVRDAIQRAKSIHCL 423
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0130 PE=3 SV=1 Back     alignment and function description
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2 Back     alignment and function description
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2 Back     alignment and function description
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1 Back     alignment and function description
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1 Back     alignment and function description
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HDA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3 Back     alignment and function description
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1 Back     alignment and function description
>sp|Q70I53|HDAH_ALCSD Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain DSM 11172) GN=hdaH PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
225431711 437 PREDICTED: histone deacetylase 14 [Vitis 1.0 0.748 0.883 1e-169
255550502425 Histone deacetylase, putative [Ricinus c 1.0 0.769 0.859 1e-167
388514335413 unknown [Lotus japonicus] 1.0 0.791 0.850 1e-165
224083458390 histone deacetylase [Populus trichocarpa 0.996 0.835 0.861 1e-165
449507477 442 PREDICTED: histone deacetylase 14-like [ 1.0 0.739 0.834 1e-162
449461867 442 PREDICTED: histone deacetylase 14-like [ 1.0 0.739 0.834 1e-162
357519987420 Histone deacetylase [Medicago truncatula 1.0 0.778 0.828 1e-162
356512844417 PREDICTED: histone deacetylase 14-like [ 1.0 0.784 0.831 1e-162
18418220423 histone deacetylase 14 [Arabidopsis thal 0.996 0.770 0.794 1e-153
297798586421 hypothetical protein ARALYDRAFT_913072 [ 0.996 0.774 0.797 1e-153
>gi|225431711|ref|XP_002267516.1| PREDICTED: histone deacetylase 14 [Vitis vinifera] gi|296088531|emb|CBI37522.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 289/327 (88%), Positives = 308/327 (94%)

Query: 1   MELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTY 60
           MEL+  FRGSEI+EL +FSPASV+DIASVH +AYVSGLEK+MD+ASQ+GII I+GSGPTY
Sbjct: 111 MELSPMFRGSEILELHSFSPASVEDIASVHTKAYVSGLEKSMDQASQKGIIYIDGSGPTY 170

Query: 61  ATATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGN 120
           ATATTFQESL AAGAGI LVDSVVAASK+  DPP+GFALIRPPGHHAIPKGPMGFCVFGN
Sbjct: 171 ATATTFQESLLAAGAGITLVDSVVAASKSSQDPPMGFALIRPPGHHAIPKGPMGFCVFGN 230

Query: 121 VAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEV 180
           VAIAARYAQR HGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEV
Sbjct: 231 VAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEV 290

Query: 181 GRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASL 240
           G G GEG+TLNLPLPGGSGD AMRTVF EVIVP AQRFKPD+ILVSAGYD HVLDPLASL
Sbjct: 291 GHGSGEGATLNLPLPGGSGDIAMRTVFDEVIVPSAQRFKPDIILVSAGYDGHVLDPLASL 350

Query: 241 QFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEF 300
           QFTTGTYYMLA+NIKQLAKDLCG RCVFFLEGGYNL+SLSYSVADSFRAFLGEPS ASEF
Sbjct: 351 QFTTGTYYMLASNIKQLAKDLCGGRCVFFLEGGYNLSSLSYSVADSFRAFLGEPSLASEF 410

Query: 301 DNPAILYEEPSAKVKQAIERVKHIHSL 327
           D+PAILYEEPS KVKQAI++VKH+HSL
Sbjct: 411 DDPAILYEEPSTKVKQAIQKVKHLHSL 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550502|ref|XP_002516301.1| Histone deacetylase, putative [Ricinus communis] gi|223544531|gb|EEF46048.1| Histone deacetylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388514335|gb|AFK45229.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224083458|ref|XP_002307035.1| histone deacetylase [Populus trichocarpa] gi|222856484|gb|EEE94031.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449507477|ref|XP_004163043.1| PREDICTED: histone deacetylase 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449461867|ref|XP_004148663.1| PREDICTED: histone deacetylase 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357519987|ref|XP_003630282.1| Histone deacetylase [Medicago truncatula] gi|355524304|gb|AET04758.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356512844|ref|XP_003525125.1| PREDICTED: histone deacetylase 14-like [Glycine max] Back     alignment and taxonomy information
>gi|18418220|ref|NP_567921.1| histone deacetylase 14 [Arabidopsis thaliana] gi|75249520|sp|Q941D6.1|HDA14_ARATH RecName: Full=Histone deacetylase 14 gi|15529220|gb|AAK97704.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gi|21360523|gb|AAM47377.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gi|332660831|gb|AEE86231.1| histone deacetylase 14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798586|ref|XP_002867177.1| hypothetical protein ARALYDRAFT_913072 [Arabidopsis lyrata subsp. lyrata] gi|297313013|gb|EFH43436.1| hypothetical protein ARALYDRAFT_913072 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
TAIR|locus:2119201423 HDA14 "AT4G33470" [Arabidopsis 0.996 0.770 0.794 3.7e-142
TIGR_CMR|SPO_0250308 SPO_0250 "histone deacetylase 0.828 0.879 0.389 4.7e-48
UNIPROTKB|Q604Q2310 MCA2486 "Histone deacetylase/A 0.822 0.867 0.391 1.2e-47
FB|FBgn0026428 1138 HDAC6 "HDAC6" [Drosophila mela 0.905 0.260 0.375 6.4e-47
UNIPROTKB|E2RSA8 668 HDAC10 "Uncharacterized protei 0.807 0.395 0.402 1.2e-44
ASPGD|ASPL0000014944 766 hdaA [Emericella nidulans (tax 0.840 0.359 0.369 3.5e-44
MGI|MGI:2158340 666 Hdac10 "histone deacetylase 10 0.813 0.399 0.377 4.1e-44
UNIPROTKB|F1RXT2 677 LOC100518786 "Uncharacterized 0.877 0.423 0.376 1.2e-43
UNIPROTKB|I3LDD6 677 LOC100518786 "Uncharacterized 0.877 0.423 0.376 1.2e-43
TAIR|locus:2095087564 HDA15 "AT3G18520" [Arabidopsis 0.767 0.445 0.4 1.3e-43
TAIR|locus:2119201 HDA14 "AT4G33470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
 Identities = 259/326 (79%), Positives = 291/326 (89%)

Query:     2 ELTSEFRGSEIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYA 61
             ELT +FRGS+I+EL NF  A+V+DIA+VH +AYV GLEKAMD AS  G+I IEGSGPTYA
Sbjct:    98 ELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGSGPTYA 157

Query:    62 TATTFQESLAAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNV 121
             T+TTFQ+SL AAGAG+ALVDSV+AAS+N  DPP+GFALIRPPGHHA+PKGPMGFCVFGNV
Sbjct:   158 TSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNV 217

Query:   122 AIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVG 181
             AIAAR+AQR HGLKR+FIIDFDVHHGNGTNDAF +DPDIFFLSTHQDGSYPGTGKI ++G
Sbjct:   218 AIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQDGSYPGTGKISDIG 277

Query:   182 RGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQ 241
             +G GEG+TLNLPLPGGSGD AMRTVF E+IVPCAQRFKPD+ILVSAGYDAHVLDPLA+LQ
Sbjct:   278 KGKGEGTTLNLPLPGGSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAHVLDPLANLQ 337

Query:   242 FTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD 301
             FTT TYY LA +IK+LAK++CG RCVFFLEGGYNL SLS SVADSFRA LGE S ASEFD
Sbjct:   338 FTTATYYSLAKDIKRLAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGEDSLASEFD 397

Query:   302 NPAILYEEPSAKVKQAIERVKHIHSL 327
             NPA LY+EP  KV+ AI+R K IH L
Sbjct:   398 NPAYLYDEPMRKVRDAIQRAKSIHCL 423
GO:0004407 "histone deacetylase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0016575 "histone deacetylation" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0042903 "tubulin deacetylase activity" evidence=IDA
GO:0043014 "alpha-tubulin binding" evidence=IDA
GO:0043621 "protein self-association" evidence=IPI
GO:0048487 "beta-tubulin binding" evidence=IDA
GO:0051721 "protein phosphatase 2A binding" evidence=IDA
GO:0090042 "tubulin deacetylation" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019760 "glucosinolate metabolic process" evidence=RCA
TIGR_CMR|SPO_0250 SPO_0250 "histone deacetylase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q604Q2 MCA2486 "Histone deacetylase/AcuC/AphA family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
FB|FBgn0026428 HDAC6 "HDAC6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSA8 HDAC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ASPGD|ASPL0000014944 hdaA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:2158340 Hdac10 "histone deacetylase 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXT2 LOC100518786 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDD6 LOC100518786 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2095087 HDA15 "AT3G18520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q57955Y535_METJANo assigned EC number0.33330.88990.8483yesno
Q941D6HDA14_ARATH3, ., 5, ., 1, ., 9, 80.79440.99690.7706yesno
O30107Y130_ARCFUNo assigned EC number0.37610.93570.8523yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.991
3rd Layer3.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 1e-133
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-111
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 1e-101
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 7e-99
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 2e-86
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 7e-77
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-75
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 4e-73
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 5e-67
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 5e-65
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 2e-60
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 2e-57
cd11683337 cd11683, HDAC10, Histone deacetylase 10 6e-55
cd10007420 cd10007, HDAC5, Histone deacetylase 5 3e-54
cd10006409 cd10006, HDAC4, Histone deacetylase 4 1e-51
cd10008378 cd10008, HDAC7, Histone deacetylase 7 4e-51
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 5e-47
cd10009379 cd10009, HDAC9, Histone deacetylase 9 3e-46
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 3e-29
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 7e-26
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 8e-25
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-23
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 1e-23
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-21
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 1e-20
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 6e-19
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 2e-17
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 2e-17
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 5e-16
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 1e-14
cd08415196 cd08415, PBP2_LysR_opines_like, The C-terminal sub 0.001
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information 
 Score =  379 bits (975), Expect = e-133
 Identities = 131/281 (46%), Positives = 174/281 (61%), Gaps = 11/281 (3%)

Query: 11  EIIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESL 70
           + +      PA+ +++  VH   Y+  +E       + G   ++    TY +  +++ +L
Sbjct: 22  DRLVFVEPRPATEEELLRVHTPEYIERVE----ETCEAGGGYLDPD--TYVSPGSYEAAL 75

Query: 71  AAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQR 130
            AAGA +A VD+V++           FAL+RPPGHHA P   MGFC+F NVAIAARYAQ+
Sbjct: 76  LAAGAALAAVDAVLSGEAEN-----AFALVRPPGHHAEPDRAMGFCLFNNVAIAARYAQK 130

Query: 131 AHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKIDEVGRGDGEGSTL 190
            +GLKRV I+D+DVHHGNGT D FYDDP + + S HQ   YPGTG  +E G G GEG T+
Sbjct: 131 RYGLKRVLIVDWDVHHGNGTQDIFYDDPSVLYFSIHQYPFYPGTGAAEETGGGAGEGFTI 190

Query: 191 NLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYML 250
           N+PLP GSGD      F EV++P A+ F+PDL+LVSAG+DAH  DPL  +  T   Y  L
Sbjct: 191 NVPLPPGSGDAEYLAAFEEVLLPIAREFQPDLVLVSAGFDAHRGDPLGGMNLTPEGYARL 250

Query: 251 AANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFL 291
              +K+LA + CG R VF LEGGYNL +L+ SV     A L
Sbjct: 251 TRLLKELADEHCGGRLVFVLEGGYNLEALAESVLAVLEALL 291

Class II histone deacetylases are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. This group includes animal HDAC4,5,6,7,8,9,10, fungal HOS3 and HDA1, plant HDA5 and HDA15 as well as other eukaryotes, archaeal and bacterial histone-like deacetylases. Eukaryotic deacetylases mostly use histones (H2, H3, H4) as substrates for deacetylation; however, non-histone substrates are known (for example, tubulin). Substrates for prokaryotic histone-like deacetylases are not known. Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Interaction partners of class II deacetylases include 14-3-3 proteins, MEF2 family of transcriptional factors, CtBP, calmodulin (CaM), SMRT, N-CoR, BCL6, HP1alpha and SUMO. Histone deacetylases play a role in the regulation of cell cycle, cell differentiation and survival. Class II mammalian HDACs are differentially inhibited by structurally diverse compounds with known antitumor activities, thus presenting them as potential drug targets for human diseases resulting from aberrant acetylation. Length = 291
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|176107 cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 327
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-77  Score=574.49  Aligned_cols=269  Identities=44%  Similarity=0.765  Sum_probs=252.5

Q ss_pred             eeeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccccCCCCcccChhHHHHHHHHHhhHHHHHHHHHhcccCCC
Q 020351           12 IIELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRP   91 (327)
Q Consensus        12 ~~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aag~~l~a~~~v~~~~~~~~   91 (327)
                      .+++.+|++++.++|++||+++||++|++.+..   .+...++.  ++++++++|+++++++|+++.|++.+++|+    
T Consensus        43 ~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~---~~~~~~d~--d~~~s~~~~~~a~~a~G~al~A~~~v~~g~----  113 (340)
T COG0123          43 SLELVEPRPATLEELLLVHSPDYVEFLESLSEE---EGYGNLDG--DTPVSPGTYEAARLAAGGALTAVDAVLEGE----  113 (340)
T ss_pred             cccccCCCcCCHHHHHhhCCHHHHHHHHHhccc---cccccccC--CCccChHHHHHHHHHhhHHHHHHHHHHcCc----
Confidence            367889999999999999999999999987432   22234443  788999999999999999999999999986    


Q ss_pred             CCCceeeecCCCCCCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEcccccccccccccccCCCEEEEeeccC--C
Q 020351           92 DPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQD--G  169 (327)
Q Consensus        92 ~~~~~fa~~rppGHHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f~~d~~Vl~iSiH~~--~  169 (327)
                        .++||++|||||||++++++|||+|||+||||++++++ +.+||+|||||+|||||||+|||+|++|+++|+|++  +
T Consensus       114 --~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~  190 (340)
T COG0123         114 --DNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRP  190 (340)
T ss_pred             --cceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCC
Confidence              37999999999999999999999999999999999987 889999999999999999999999999999999996  6


Q ss_pred             CCCCCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHH
Q 020351          170 SYPGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYM  249 (327)
Q Consensus       170 ~yP~tg~~~e~G~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~  249 (327)
                      +||+||..+++|.+. +|+++|||||+|++|++|+.+|+.++.|++++|+||+||||||||+|.+||||+|+||+++|.+
T Consensus       191 ~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~  269 (340)
T COG0123         191 FYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAK  269 (340)
T ss_pred             CCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHH
Confidence            899999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCC
Q 020351          250 LAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEP  294 (327)
Q Consensus       250 ~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~  294 (327)
                      +++++++++.++ ++|+++||||||+.+.+++++..++..|.|..
T Consensus       270 ~~~~v~~~a~~~-~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~  313 (340)
T COG0123         270 IGRAVRKLAEGY-GGPVVAVLEGGYNLDALARSLVAFLAGLAGLV  313 (340)
T ss_pred             HHHHHHHHHHhc-CCCeEEEecCCCChHHHHHHHHHHHHHHcCCC
Confidence            999999999988 89999999999999999999999999999964

>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 1e-43
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 1e-43
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 2e-42
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 2e-42
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 6e-42
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 8e-42
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 3e-39
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 1e-24
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 2e-23
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 2e-22
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 2e-21
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 3e-21
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 7e-18
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 1e-17
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 1e-17
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 1e-17
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 1e-17
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 1e-17
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 1e-17
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 1e-17
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 1e-17
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 1e-17
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 1e-17
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 3e-17
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 2e-16
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 2e-15
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 147/280 (52%), Gaps = 13/280 (4%)
Query: 25  DIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVV 84
           DI   H+ A++    + M R S        G G T       + +  +AG  + L   V 
Sbjct: 71  DILRAHSAAHL----ENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVA 126
Query: 85  AASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDV 144
               +      G+AL+ PPGHHA     MGFC+F N ++AA YA+   G++RV I+D+DV
Sbjct: 127 TGELSA-----GYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDV 181
Query: 145 HHGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGDGEGSTLNLPLPGGSGDTAM 203
           HHGNGT D +++DP +  +S HQ   + P +G   E G G+G G  +N+PLP GSG+ A 
Sbjct: 182 HHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAY 241
Query: 204 RTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLAANIKQLAKDLCG 263
                +V++P  + ++P LI+V +G+DA +LDPLA +  T   +  +A      A D+C 
Sbjct: 242 LHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICD 301
Query: 264 SRCVFFLEGGYNLNSLSY---SVADSFRAFLGEPSKASEF 300
            R VF  EGGY+ + L +   +V +        P    EF
Sbjct: 302 GRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEF 341
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 1e-130
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 1e-117
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 1e-106
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-103
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 1e-84
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 1e-77
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 6e-77
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 8e-77
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
 Score =  374 bits (962), Expect = e-130
 Identities = 96/316 (30%), Positives = 153/316 (48%), Gaps = 14/316 (4%)

Query: 13  IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAA 72
           +       A+  DI   H+ A++  +++  +  +          G T       + +  +
Sbjct: 59  LTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTG----DGITMMGNGGLEIARLS 114

Query: 73  AGAGIALVDSVVA-ASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRA 131
           AG  + L   V             G+AL+ PPGHHA     MGFC+F N ++AA YA+  
Sbjct: 115 AGGAVELTRRVATGELSA------GYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAV 168

Query: 132 HGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGRGDGEGSTL 190
            G++RV I+D+DVHHGNGT D +++DP +  +S HQ   + P +G   E G G+G G  +
Sbjct: 169 LGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNI 228

Query: 191 NLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYML 250
           N+PLP GSG+ A      +V++P  + ++P LI+V +G+DA +LDPLA +  T   +  +
Sbjct: 229 NVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQM 288

Query: 251 AANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDN--PAILYE 308
           A      A D+C  R VF  EGGY+ + L +          G  S    +      +   
Sbjct: 289 ARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGN 348

Query: 309 EPSAKVKQAIERVKHI 324
                 + AIE +  +
Sbjct: 349 TLLDAERAAIEEIVPL 364
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 80.29
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
Probab=100.00  E-value=3e-84  Score=628.70  Aligned_cols=305  Identities=31%  Similarity=0.562  Sum_probs=275.6

Q ss_pred             eeeeCCCCCCHHHHHhhccHHHHHHHHHHhHHHHhcCcccccCCCCcccChhHHHHHHHHHhhHHHHHHHHHhcccCCCC
Q 020351           13 IELKNFSPASVDDIASVHARAYVSGLEKAMDRASQQGIILIEGSGPTYATATTFQESLAAAGAGIALVDSVVAASKNRPD   92 (327)
Q Consensus        13 ~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aag~~l~a~~~v~~~~~~~~~   92 (327)
                      +++.+|++|+.++|++||+++||++|++.+..   ++...++ .+++++++++|+++++++|+++.|++.+++|+.    
T Consensus        59 ~~~~~p~~a~~~~l~~vH~~~Yv~~l~~~~~~---~~~~~l~-~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~----  130 (369)
T 1zz1_A           59 LTPIAAVAATDADILRAHSAAHLENMKRVSNL---PTGGDTG-DGITMMGNGGLEIARLSAGGAVELTRRVATGEL----  130 (369)
T ss_dssp             SEECCCCCCCHHHHHTTSCHHHHHHHHHHHHS---TTCEECS-SSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSC----
T ss_pred             ceEeCCCcCCHHHHHHhccHHHHHHHHHhCcc---ccceecC-CCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence            56789999999999999999999999886420   2223333 347899999999999999999999999998863    


Q ss_pred             CCceeeecCCCCCCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEcccccccccccccccCCCEEEEeeccCCCCC
Q 020351           93 PPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYP  172 (327)
Q Consensus        93 ~~~~fa~~rppGHHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt~~~f~~d~~Vl~iSiH~~~~yP  172 (327)
                       +++||++|||||||++++++|||+|||+||||+++++++|++||+|||||||||||||+|||+||+|+|+|+|++++||
T Consensus       131 -~~afa~~rppGHHA~~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP  209 (369)
T 1zz1_A          131 -SAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFP  209 (369)
T ss_dssp             -SEEEECCSSCCTTCCTTCCBTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSS
T ss_pred             -cceEEEecCCccCcCCCCCCCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCC
Confidence             4899999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             -CCCCCCccCCCCCCCceeeccCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccCCCCCCCCCCCcccCHHHHHHHH
Q 020351          173 -GTGKIDEVGRGDGEGSTLNLPLPGGSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYDAHVLDPLASLQFTTGTYYMLA  251 (327)
Q Consensus       173 -~tg~~~e~G~~~g~g~~~nipL~~g~~d~~y~~~~~~~l~p~~~~f~PdlIvv~aG~D~~~~Dplg~~~ls~~~~~~~~  251 (327)
                       +||..+|+|.|.|+|+++|||||+|++|++|+.+|+++++|++++|+||+||||||||+|.+||||+|+||+++|.+++
T Consensus       210 ~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~  289 (369)
T 1zz1_A          210 PDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMA  289 (369)
T ss_dssp             TTCCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHH
T ss_pred             CCCCcccccCCCCCCceEEeeecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCCCCCCCCCCC--ccccCCccHHHHHHHHHHHHHhC
Q 020351          252 ANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFDNP--AILYEEPSAKVKQAIERVKHIHS  326 (327)
Q Consensus       252 ~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~  326 (327)
                      +.|++++.++|+||++++|||||++++++++|..++++|+|.+...+|+.+.  .....+..+.++++|+++|+.|.
T Consensus       290 ~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  366 (369)
T 1zz1_A          290 RRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLA  366 (369)
T ss_dssp             HHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCCCCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGGG
T ss_pred             HHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCCCCCchhHHHhhccccchHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999976421221110  11134668899999999988763
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 327
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 4e-52
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 1e-48
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 2e-44
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (441), Expect = 4e-52
 Identities = 99/338 (29%), Positives = 151/338 (44%), Gaps = 33/338 (9%)

Query: 13  IELKNFSPASVDDIASVHARAYVSGLEKA------------MDRASQQGIILIEGSGPTY 60
            E      AS++++ SVH+  +V                      +Q+  +++   G   
Sbjct: 50  CECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGV 109

Query: 61  ATATTFQESL---AAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCV 117
            T T + E     AA  A  ++ D     +            +RPPGHHA     MGFC 
Sbjct: 110 DTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAV--VRPPGHHADHSTAMGFCF 167

Query: 118 FGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGS---YPGT 174
           F +VAIA R  Q+     ++ I+D+DVHHGNGT   FY DP + ++S H+      +PG+
Sbjct: 168 FNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS 227

Query: 175 GKIDEVGRGDGEGSTLNLPLPG----GSGDTAMRTVFHEVIVPCAQRFKPDLILVSAGYD 230
           G +DEVG G GEG  +N+   G      GD      F  V++P A+ F PDL+LVSAG+D
Sbjct: 228 GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFD 287

Query: 231 AHVLD--PLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFR 288
           A      PL     +   +  +     Q   +L G   V  LEGG++L ++  +      
Sbjct: 288 AAEGHPAPLGGYHVSAKCFGYMT----QQLMNLAGGAVVLALEGGHDLTAICDASEACVA 343

Query: 289 AFLGEPSKASEFDNPAILYEEPSAKVKQAIERVKHIHS 326
           A LG               ++P+    +++E V  +HS
Sbjct: 344 ALLGNR--VDPLSEEGW-KQKPNLNAIRSLEAVIRVHS 378
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-77  Score=580.36  Aligned_cols=302  Identities=33%  Similarity=0.537  Sum_probs=262.6

Q ss_pred             ceeeeeCCCCCCHHHHHhhccHHHHHHHHHHhH-----------HHHhc--------CcccccCCCCcccCh-hHHHHHH
Q 020351           11 EIIELKNFSPASVDDIASVHARAYVSGLEKAMD-----------RASQQ--------GIILIEGSGPTYATA-TTFQESL   70 (327)
Q Consensus        11 ~~~~~~~~~~as~~~l~~vHs~~Yv~~l~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~-~~~~~a~   70 (327)
                      +.+++.+|++|+.++|++||+++||+++++...           .....        +...+  +.++++++ +++++++
T Consensus        48 ~~~~~~~p~~a~~~~L~~vH~~~YI~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~dt~~~~~~s~~Aa~  125 (386)
T d3c10a1          48 SQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGV--DTDTIWNELHSSNAAR  125 (386)
T ss_dssp             GGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHHC---CBCTTSCEES--SSSCEECTTTHHHHHH
T ss_pred             cCCeEeCCCCCCHHHHHHhCCHHHHHHHhhchhhhhcccccccchhhhhhhhcccCCCCccc--CCCcccCcchHHHHHH
Confidence            346788999999999999999999998863210           00000        11112  23566655 8999999


Q ss_pred             HHHhhHHHHHHHHHhcccCCCCCCceeeecCCCCCCCCCCCCCCcccccHHHHHHHHHHHHcCCCeEEEEEccccccccc
Q 020351           71 AAAGAGIALVDSVVAASKNRPDPPLGFALIRPPGHHAIPKGPMGFCVFGNVAIAARYAQRAHGLKRVFIIDFDVHHGNGT  150 (327)
Q Consensus        71 ~aag~~l~a~~~v~~~~~~~~~~~~~fa~~rppGHHA~~~~~~GFC~fN~vAiaa~~l~~~~~~~RV~iiD~DvHhGnGt  150 (327)
                      +++|+++.|++.+++++.     .++||++|||||||++++++|||+|||+||||++++++++++||+||||||||||||
T Consensus       126 ~aaG~~~~a~~~v~~~~~-----~~afa~~rppGHHA~~~~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGT  200 (386)
T d3c10a1         126 WAAGSVTDLAFKVASREL-----KNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGT  200 (386)
T ss_dssp             HHHHHHHHHHHHHHTTSS-----SEEEECCSSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHH
T ss_pred             HHhhHHHHHHhhhhcCcc-----cccccccccccccccccccCCcccccHHHHHHHHHHhhcccCCceEEecccCCCCce
Confidence            999999999999998863     489999999999999999999999999999999999998899999999999999999


Q ss_pred             ccccccCCCEEEEeeccC---CCCCCCCCCCccCCCCCCCceeeccCC----CCCCHHHHHHHHHHHHHHHHHhcCCCEE
Q 020351          151 NDAFYDDPDIFFLSTHQD---GSYPGTGKIDEVGRGDGEGSTLNLPLP----GGSGDTAMRTVFHEVIVPCAQRFKPDLI  223 (327)
Q Consensus       151 ~~~f~~d~~Vl~iSiH~~---~~yP~tg~~~e~G~~~g~g~~~nipL~----~g~~d~~y~~~~~~~l~p~~~~f~PdlI  223 (327)
                      |++|++||+|+|+|||++   ++||+||..+|+|.+.|+|+++|+|||    ++++|++|+.+|+++|.|++++|+||+|
T Consensus       201 q~if~~~~~V~~~SiH~~~~~~~~p~tG~~~e~G~g~g~g~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlI  280 (386)
T d3c10a1         201 QQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLV  280 (386)
T ss_dssp             HHHHTTCTTEEEEEEEECTTTTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEE
T ss_pred             eeEeeccccccccccccccccccCCCCCCHHhcCCCCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999996   478999999999999999999999987    5688999999999999999999999999


Q ss_pred             EEeccCCCCCCC--CCCCcccCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCchhHHHHHHHHHHHHhCCCCCCCCCC
Q 020351          224 LVSAGYDAHVLD--PLASLQFTTGTYYMLAANIKQLAKDLCGSRCVFFLEGGYNLNSLSYSVADSFRAFLGEPSKASEFD  301 (327)
Q Consensus       224 vv~aG~D~~~~D--plg~~~ls~~~~~~~~~~l~~~a~~~~~g~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~  301 (327)
                      |||||||+|++|  |||+|+||+++|.+++++|+++    |++|++++|||||+++++++++..++++|+|.+.+  +. 
T Consensus       281 vvsaG~D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~----~~~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~--~~-  353 (386)
T d3c10a1         281 LVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNL----AGGAVVLALEGGHDLTAICDASEACVAALLGNRVD--PL-  353 (386)
T ss_dssp             EEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTS----GGGCEEEEECSCCCHHHHHHHHHHHHHHHHTCCCC--GG-
T ss_pred             EEeCCccccccCcchhhcCccCHHHHHHHHHHHHHH----cCCCEEEEeCCCCChhHHHHHHHHHHHHHhCCCCC--CC-
Confidence            999999999999  8999999999999999988765    46899999999999999999999999999997532  11 


Q ss_pred             CCccccCCccHHHHHHHHHHHHHhC
Q 020351          302 NPAILYEEPSAKVKQAIERVKHIHS  326 (327)
Q Consensus       302 ~~~~~~~~~~~~~~~~i~~~~~~~~  326 (327)
                      .+......|+.+..+.|+++|+.|.
T Consensus       354 ~~~~~~~~~~~~~~~~l~~~~~~~~  378 (386)
T d3c10a1         354 SEEGWKQKPNLNAIRSLEAVIRVHS  378 (386)
T ss_dssp             GCSGGGSCCCHHHHHHHHHHHHHHT
T ss_pred             CccccccCCCHHHHHHHHHHHHHHH
Confidence            1223346778888999999999875
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure