Query 020354
Match_columns 327
No_of_seqs 195 out of 931
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.8E-50 9.7E-55 358.3 13.0 135 2-139 10-144 (174)
2 1ut7_A No apical meristem prot 100.0 7.8E-50 2.7E-54 354.5 12.8 152 2-160 12-165 (171)
3 1ldd_A APC2WHB, anaphase promo 28.3 28 0.00094 26.5 2.0 27 7-34 36-63 (74)
4 3nr5_A MAF1, repressor of RNA 17.4 32 0.0011 29.9 0.4 36 39-74 119-155 (164)
5 1r7l_A Phage protein; structur 11.8 1.2E+02 0.0042 24.6 2.4 17 257-273 8-24 (110)
6 3dz1_A Dihydrodipicolinate syn 10.9 97 0.0033 28.7 1.7 18 7-26 109-126 (313)
7 1cmb_A Met APO-repressor; DNA- 10.0 2.3E+02 0.008 22.4 3.4 40 14-57 50-89 (104)
8 1f6k_A N-acetylneuraminate lya 10.0 1E+02 0.0035 28.1 1.6 19 7-26 106-124 (293)
9 2k2d_A Ring finger and CHY zin 9.9 62 0.0021 24.6 0.0 19 255-273 10-28 (79)
10 2ehh_A DHDPS, dihydrodipicolin 9.8 1.1E+02 0.0036 28.1 1.6 19 7-26 102-120 (294)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.8e-50 Score=358.35 Aligned_cols=135 Identities=54% Similarity=1.089 Sum_probs=122.5
Q ss_pred CCCCCCCCCcEECCChHHHHHHHHHHHhccCCCCCCceeeccCCCCCCcchhhhhhcCCCCCceEEEEecCCCCCCCCCc
Q 020354 2 NSFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGSEEQNEWYFFSHKDKKYPTGTR 81 (327)
Q Consensus 2 ~~~~~LPpGfRF~PTDEELI~~YLr~Kv~g~pl~~~~I~dvDVY~~ePwdLp~~~~~g~~~~~~WYFFs~~~kk~~~G~R 81 (327)
.....|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..| +++||||+++++||++|.|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~R 86 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGSR 86 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----CC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCCC
Confidence 4567899999999999999999999999999999999999999999999999976544 3699999999999999999
Q ss_pred ccccccCceeeecCCCeeEecCCeeEEeEEEEEEeeccCCCCCCcCeEEEEEEeCCCC
Q 020354 82 TNRATKAGFWKATGRDKAIYSRHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNE 139 (327)
Q Consensus 82 ~nRatggG~WK~tG~~k~I~~~g~lIG~KKtLvFy~gr~p~g~KT~WvMhEY~L~~~~ 139 (327)
++|++++||||++|++++|..+|.+||+||+|+||.|++|++.||+|+||||+|....
T Consensus 87 ~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~ 144 (174)
T 3ulx_A 87 PNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAG 144 (174)
T ss_dssp SCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC
T ss_pred ceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=7.8e-50 Score=354.54 Aligned_cols=152 Identities=45% Similarity=0.862 Sum_probs=126.6
Q ss_pred CCCCCCCCCcEECCChHHHHHHHHHHHhccCCCCCCceeeccCCCCCCcchhhhhhcCCCCCceEEEEecCCCCCCCCCc
Q 020354 2 NSFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGSEEQNEWYFFSHKDKKYPTGTR 81 (327)
Q Consensus 2 ~~~~~LPpGfRF~PTDEELI~~YLr~Kv~g~pl~~~~I~dvDVY~~ePwdLp~~~~~g~~~~~~WYFFs~~~kk~~~G~R 81 (327)
.....|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..| +++||||+++++||++|.|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R 88 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSR 88 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCc
Confidence 3467899999999999999999999999999999999999999999999999986543 4699999999999999999
Q ss_pred ccccccCceeeecCCCeeEecCCeeEEeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCC--CcCCCCCCcccCCCccc
Q 020354 82 TNRATKAGFWKATGRDKAIYSRHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGT--PQVKNQAQPIIKPFTQY 159 (327)
Q Consensus 82 ~nRatggG~WK~tG~~k~I~~~g~lIG~KKtLvFy~gr~p~g~KT~WvMhEY~L~~~~~~~--~~~e~w~~~~~~~~~~~ 159 (327)
++|+|++|+||++|++++|..++.+||+||+|+||+|++|++.||+|+||||+|....... ...+ ..|+.+++.
T Consensus 89 ~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~----~~VlCrv~~ 164 (171)
T 1ut7_A 89 PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLD----DWVLCRIYK 164 (171)
T ss_dssp CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------C----CEEEEEEEE
T ss_pred ccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCC----CEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999865221 1222 246666665
Q ss_pred c
Q 020354 160 H 160 (327)
Q Consensus 160 ~ 160 (327)
+
T Consensus 165 k 165 (171)
T 1ut7_A 165 K 165 (171)
T ss_dssp C
T ss_pred c
Confidence 5
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=28.27 E-value=28 Score=26.47 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=22.4
Q ss_pred CCCCcEECC-ChHHHHHHHHHHHhccCCC
Q 020354 7 VPPGFRFHP-TDEELVDYYLRKKVASKRI 34 (327)
Q Consensus 7 LPpGfRF~P-TDEELI~~YLr~Kv~g~pl 34 (327)
.|.|+.|.. |++||-. ||..|+..+.+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 377999998 8888888 59999987755
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=17.39 E-value=32 Score=29.91 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=20.5
Q ss_pred eeeccCCCCCCcchhhhhh-cCCCCCceEEEEecCCC
Q 020354 39 IKDVDLYKIEPWDLQELCK-IGSEEQNEWYFFSHKDK 74 (327)
Q Consensus 39 I~dvDVY~~ePwdLp~~~~-~g~~~~~~WYFFs~~~k 74 (327)
+.++|||.+.|-.-.+... .|.--.-.+|||.++.|
T Consensus 119 l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYFFyNKklK 155 (164)
T 3nr5_A 119 LAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLK 155 (164)
T ss_dssp GGGCEEEEECCCGGGCTTCSCCCSCEEEEEEEETTTT
T ss_pred ccCCeEEEEcCCCCCCCCCCCCceeeeeeeEEecCcc
Confidence 6789999999974322221 23222235677766543
No 5
>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} SCOP: d.277.1.1
Probab=11.78 E-value=1.2e+02 Score=24.59 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.4
Q ss_pred ccchHHHHHHHHhhccc
Q 020354 257 VTDWRVLDKFVASQLSH 273 (327)
Q Consensus 257 ~~dw~~ld~~vasql~~ 273 (327)
..+=|.+||++|+|+=+
T Consensus 8 ~m~~Re~drLIAeKvmG 24 (110)
T 1r7l_A 8 AMKPRDINKLIASKIFG 24 (110)
T ss_dssp SCCHHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHhcc
Confidence 46679999999999965
No 6
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=10.88 E-value=97 Score=28.68 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=14.1
Q ss_pred CCCCcEECCChHHHHHHHHH
Q 020354 7 VPPGFRFHPTDEELVDYYLR 26 (327)
Q Consensus 7 LPpGfRF~PTDEELI~~YLr 26 (327)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 6774 56999999999754
No 7
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=10.03 E-value=2.3e+02 Score=22.43 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCceeeccCCCCCCcchhhhhh
Q 020354 14 HPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCK 57 (327)
Q Consensus 14 ~PTDEELI~~YLr~Kv~g~pl~~~~I~dvDVY~~ePwdLp~~~~ 57 (327)
|-|..||+..-...-..|+|+|. +.|+-+..|-++|...+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ak 89 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAAK 89 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHHH
Confidence 56788887765566678999975 57888899999988654
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=10.02 E-value=1e+02 Score=28.14 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=14.9
Q ss_pred CCCCcEECCChHHHHHHHHH
Q 020354 7 VPPGFRFHPTDEELVDYYLR 26 (327)
Q Consensus 7 LPpGfRF~PTDEELI~~YLr 26 (327)
+||-| |.||+++|+.||-.
T Consensus 106 ~~P~y-~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp ECCCS-SCCCHHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHHH
Confidence 46644 88999999999754
No 9
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=9.91 E-value=62 Score=24.61 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHhhccc
Q 020354 255 DQVTDWRVLDKFVASQLSH 273 (327)
Q Consensus 255 ~~~~dw~~ld~~vasql~~ 273 (327)
|+..-|+.||..||+|--.
T Consensus 10 dm~~~~~~lD~~ia~~pmP 28 (79)
T 2k2d_A 10 DMTRYWRQLDDEVAQTPMP 28 (79)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 4445599999999998744
No 10
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=9.79 E-value=1.1e+02 Score=28.05 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=14.7
Q ss_pred CCCCcEECCChHHHHHHHHH
Q 020354 7 VPPGFRFHPTDEELVDYYLR 26 (327)
Q Consensus 7 LPpGfRF~PTDEELI~~YLr 26 (327)
+||- .|.||+++|+.||-.
T Consensus 102 ~~P~-y~~~s~~~l~~~f~~ 120 (294)
T 2ehh_A 102 VVPY-YNKPTQRGLYEHFKT 120 (294)
T ss_dssp ECCC-SSCCCHHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHHH
Confidence 4664 478999999999753
Done!