Query 020355
Match_columns 327
No_of_seqs 268 out of 1460
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 2.2E-54 4.9E-59 403.4 30.9 256 54-326 63-331 (365)
2 KOG0697 Protein phosphatase 1B 100.0 8.5E-53 1.9E-57 362.5 22.0 253 54-326 20-292 (379)
3 PTZ00224 protein phosphatase 2 100.0 2E-50 4.4E-55 378.1 30.4 245 52-326 18-272 (381)
4 KOG0698 Serine/threonine prote 100.0 6E-50 1.3E-54 371.7 29.6 253 58-326 42-305 (330)
5 PF00481 PP2C: Protein phospha 100.0 3.3E-51 7.1E-56 368.5 16.8 243 58-317 2-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 4E-46 8.7E-51 335.4 21.2 238 53-326 5-253 (262)
7 KOG0699 Serine/threonine prote 100.0 1.4E-44 2.9E-49 321.8 20.6 163 150-327 330-505 (542)
8 KOG0700 Protein phosphatase 2C 100.0 1.4E-44 3.1E-49 329.1 20.3 225 69-309 84-376 (390)
9 smart00332 PP2Cc Serine/threon 100.0 4.3E-40 9.4E-45 295.5 30.1 243 55-322 5-255 (255)
10 cd00143 PP2Cc Serine/threonine 100.0 8.1E-40 1.7E-44 293.1 30.1 243 57-324 2-254 (254)
11 PRK14559 putative protein seri 100.0 7.3E-41 1.6E-45 329.9 24.3 247 54-326 373-636 (645)
12 KOG1323 Serine/threonine phosp 100.0 5.8E-31 1.3E-35 232.6 20.2 222 87-325 141-487 (493)
13 KOG0618 Serine/threonine phosp 99.9 6.2E-24 1.3E-28 210.1 14.5 244 53-326 519-773 (1081)
14 KOG1379 Serine/threonine prote 99.9 2E-21 4.3E-26 172.3 21.8 203 69-323 90-329 (330)
15 PF13672 PP2C_2: Protein phosp 99.8 7.3E-20 1.6E-24 160.1 17.4 179 61-291 3-196 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 8.5E-18 1.8E-22 144.8 19.1 175 68-308 15-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 6.6E-15 1.4E-19 150.4 20.4 201 54-324 550-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 1.6E-12 3.6E-17 111.6 20.2 176 90-325 4-193 (193)
19 COG2208 RsbU Serine phosphatas 98.4 3.5E-05 7.6E-10 73.1 18.7 176 89-325 174-366 (367)
20 COG3700 AphA Acid phosphatase 66.7 7.3 0.00016 32.9 3.5 49 263-312 71-130 (237)
21 PF09436 DUF2016: Domain of un 48.9 11 0.00024 26.7 1.5 19 260-278 24-42 (72)
22 PRK10693 response regulator of 48.5 1.8E+02 0.0038 26.6 9.9 45 128-176 207-253 (303)
23 PF05402 PqqD: Coenzyme PQQ sy 33.1 1E+02 0.0022 20.9 4.5 28 278-305 14-41 (68)
24 PF07228 SpoIIE: Stage II spor 31.9 2.1E+02 0.0047 23.5 7.2 65 262-326 2-71 (193)
25 TIGR00525 folB dihydroneopteri 29.0 2.6E+02 0.0057 21.4 6.6 56 269-324 42-99 (116)
26 TIGR03859 PQQ_PqqD coenzyme PQ 28.0 1.2E+02 0.0026 21.8 4.2 41 262-305 15-55 (81)
27 cd00534 DHNA_DHNTPE Dihydroneo 28.0 2.2E+02 0.0048 21.9 6.0 54 269-322 43-98 (118)
28 PF02152 FolB: Dihydroneopteri 27.8 2.3E+02 0.005 21.4 6.1 54 270-323 41-96 (113)
29 PF14014 DUF4230: Protein of u 27.0 2.6E+02 0.0057 22.4 6.6 40 250-289 76-115 (157)
30 PF12095 DUF3571: Protein of u 25.5 2.7E+02 0.0058 20.4 5.4 48 261-308 8-65 (83)
31 PRK15322 invasion protein OrgB 23.3 2.2E+02 0.0048 24.6 5.4 46 263-308 147-193 (210)
32 PF05785 CNF1: Rho-activating 22.7 91 0.002 28.3 3.2 25 147-172 129-153 (281)
33 smart00331 PP2C_SIG Sigma fact 21.8 4.6E+02 0.0099 21.6 9.4 64 261-325 27-95 (193)
34 PF06972 DUF1296: Protein of u 21.2 1.8E+02 0.0038 19.8 3.5 26 277-305 19-44 (60)
35 PF01436 NHL: NHL repeat; Int 20.1 1.7E+02 0.0038 16.1 3.8 21 157-177 8-28 (28)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.2e-54 Score=403.43 Aligned_cols=256 Identities=35% Similarity=0.607 Sum_probs=221.7
Q ss_pred ccceeeeecccCCCCCCCceEEEeccCCCC----CCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCCc--hHHHH
Q 020355 54 VEIEADAAEDKGSRHTMEDASVVLVDASSD----SPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP--PAKKA 127 (327)
Q Consensus 54 ~~i~~~~~s~~G~R~~nED~~~~~~~~~~~----~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~~--~~~~~ 127 (327)
+.+.++.++++|.|+.|||++++..++... ........||||||||||+.+|++|++.+++.+.+.... .+.++
T Consensus 63 ~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~a 142 (365)
T PLN03145 63 PVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKV 142 (365)
T ss_pred CceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 346789999999999999999876543211 112234689999999999999999999999988764322 36788
Q ss_pred HHHHHHHhhHHHHhhhcC-CCcCCCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCC
Q 020355 128 ILDGFRKTDESLLQESVS-GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA 206 (327)
Q Consensus 128 l~~~~~~~~~~l~~~~~~-~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~ 206 (327)
|.++|..+|+.+.+.... ....+|||++++++.++.+|||||||||||+++.+ ++++||+||++
T Consensus 143 l~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g---------------~~~~LT~DH~~ 207 (365)
T PLN03145 143 VSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRG---------------KAIEMSRDHKP 207 (365)
T ss_pred HHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC---------------eEEEecCCCCC
Confidence 999999999998775432 23458999999999999999999999999999998 99999999999
Q ss_pred CChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCC------CeeecCceeEEEecCCCeEEEEEcCCcccccChH
Q 020355 207 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPS 280 (327)
Q Consensus 207 ~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~------~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ 280 (327)
.++.|+.||.+.||.+. .++++|.+.+||+|||..+|.. +++++|++..+++.++|+|||||||||||+|+++
T Consensus 208 ~~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~e 286 (365)
T PLN03145 208 MCSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQ 286 (365)
T ss_pred CCHHHHHHHHHcCCcee-cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHH
Confidence 99999999999999985 6799999999999999887642 3789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020355 281 DAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 326 (327)
Q Consensus 281 ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 326 (327)
++++++...+....+|+++|+.|++.|+ .+++.||||||||+|++
T Consensus 287 e~v~~i~~~l~~~~~p~~aa~~Lv~~Al-~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 287 NAVDFARRRLQEHNDPVMCSKELVDEAL-KRKSGDNLAVVVVCFQS 331 (365)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH-hCCCCCCEEEEEEEeec
Confidence 9999998887776789999999999998 69999999999999974
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-53 Score=362.50 Aligned_cols=253 Identities=32% Similarity=0.552 Sum_probs=226.9
Q ss_pred ccceeeeecccCCCCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCCc----------h
Q 020355 54 VEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP----------P 123 (327)
Q Consensus 54 ~~i~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~~----------~ 123 (327)
-.+.||.+|++|||-.|||++.....+.. +-.+|.||+|||||.|+..|.+|+++|...+.+.... .
T Consensus 20 Nglryg~SSMQGWR~eMEDah~A~~~l~~---~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~ 96 (379)
T KOG0697|consen 20 NGLRYGVSSMQGWRVEMEDAHTAVAGLPS---PLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVEN 96 (379)
T ss_pred CceeeeeccccchhhhhhhhhhhhhcCCC---CccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHH
Confidence 57889999999999999999988765543 4468999999999999999999999999988764221 3
Q ss_pred HHHHHHHHHHHhhHHHHhhhc--CCCcCCCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeC
Q 020355 124 AKKAILDGFRKTDESLLQESV--SGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVT 201 (327)
Q Consensus 124 ~~~~l~~~~~~~~~~l~~~~~--~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT 201 (327)
++.-|+.+|.++|+.+..... .+..++|||++++++...++|++|+||||++++|++ .+..-|
T Consensus 97 ~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng---------------~~~f~T 161 (379)
T KOG0697|consen 97 VEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG---------------EVVFST 161 (379)
T ss_pred HHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCC---------------ceEEec
Confidence 778899999999998876543 334568999999999999999999999999999999 999999
Q ss_pred CCCCCCChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCC--------CeeecCceeEEEecCCCeEEEEEcCCc
Q 020355 202 RVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGL 273 (327)
Q Consensus 202 ~DH~~~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~--------~v~~~p~i~~~~l~~~d~~lvLaSDGl 273 (327)
.||+|.+|.|++||+.+||.|.. .|++|.|+++|||||+.||.. -|+++|+|....-...|+|+||||||+
T Consensus 162 qDHKP~~p~EkeRIqnAGGSVMI-qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGI 240 (379)
T KOG0697|consen 162 QDHKPYLPKEKERIQNAGGSVMI-QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGI 240 (379)
T ss_pred cCCCCCChHHHHHHhcCCCeEEE-EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccch
Confidence 99999999999999999999974 599999999999999999953 388999999999888888999999999
Q ss_pred ccccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020355 274 WGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 326 (327)
Q Consensus 274 wd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 326 (327)
||+|+++|++++++..+.-..++..+|..+++.++ .+|++||+|+|+|.|..
T Consensus 241 wDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCL-hKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 241 WDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCL-HKGSRDNMSIVLVCFPG 292 (379)
T ss_pred hhhcccHHHHHHHHhhheecccHHHHHHHHHHHHH-hccCccCceEEEEecCC
Confidence 99999999999999988888899999999999998 69999999999999863
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2e-50 Score=378.05 Aligned_cols=245 Identities=31% Similarity=0.510 Sum_probs=211.8
Q ss_pred ccccceeeeecccCCCCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 020355 52 DFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPPAKKAILDG 131 (327)
Q Consensus 52 ~~~~i~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~~~~~~~l~~~ 131 (327)
....+.++.++++|.|++|||++++... ..+.||||||||||..+|+++++.|...+.........+.|.++
T Consensus 18 ~~~~~~~g~~s~~G~R~~nED~~~v~~~--------~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~~~~~~l~~a 89 (381)
T PTZ00224 18 GNSIFRCASACVNGYRESMEDAHLLYLT--------DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEPMTDERMEEL 89 (381)
T ss_pred CCccEEEEEEeCCCCCCCCCCeeEeccC--------CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 4467889999999999999999876432 13469999999999999999999999877654433345679999
Q ss_pred HHHhhHHHHhhhcCCCcCCCCcEEEEEEe-CCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCCCChh
Q 020355 132 FRKTDESLLQESVSGGWQDGATAVCIWIL-GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQ 210 (327)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~GtT~~~~~i~-~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~~~~~ 210 (327)
|..+|+.+..... .+|||++++++. +.++|||||||||+|++|++ ++++||+||++.++.
T Consensus 90 ~~~~d~~i~~~~~----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g---------------~~~~LT~DH~~~~~~ 150 (381)
T PTZ00224 90 CLEIDEEWMDSGR----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG---------------KLVFATEDHKPNNPG 150 (381)
T ss_pred HHHHHHHHHhccc----CCCCeEEEEEEEECCEEEEEEcccceEEEEECC---------------EEEEcccCCCCCCHH
Confidence 9999999986432 469999988876 57999999999999999998 999999999999999
Q ss_pred HHHHHHHcCCEEeeCCeecCeeecccccccccCCCC--------CeeecCceeEEEecCCCeEEEEEcCCccc-ccChHH
Q 020355 211 ERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWG-VFGPSD 281 (327)
Q Consensus 211 e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~--------~v~~~p~i~~~~l~~~d~~lvLaSDGlwd-~l~~~e 281 (327)
|+.||.++++.+. .+|++|.+.+||+|||..+|.. .++++|+|..+.+.++| ||||||||||| +++++|
T Consensus 151 E~~RI~~~gg~v~-~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eE 228 (381)
T PTZ00224 151 ERQRIEACGGRVV-SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEE 228 (381)
T ss_pred HHhHHHHccCEec-cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHH
Confidence 9999999999996 4689999999999999876643 36789999999998766 99999999999 899999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020355 282 AVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 326 (327)
Q Consensus 282 i~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 326 (327)
+++++.+.+....+++.+|+.|++.|+ .+|+.||||||||+|..
T Consensus 229 i~~iv~~~l~~~~~~~~aA~~Lv~~A~-~rGs~DNITvIvV~~~~ 272 (381)
T PTZ00224 229 VVAFVKEQLETCDDLAVVAGRVCDEAI-RRGSKDNISCLIVQLKD 272 (381)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCCCCEEEEEEEeeC
Confidence 999998766656689999999999998 79999999999999864
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6e-50 Score=371.68 Aligned_cols=253 Identities=38% Similarity=0.574 Sum_probs=220.0
Q ss_pred eeeecccCCCCCCCceEEEeccCCCCC-CCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCCc-----hHHHHHHHH
Q 020355 58 ADAAEDKGSRHTMEDASVVLVDASSDS-PPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP-----PAKKAILDG 131 (327)
Q Consensus 58 ~~~~s~~G~R~~nED~~~~~~~~~~~~-~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~~-----~~~~~l~~~ 131 (327)
.+.++.+|.|+.|||++....+..... .......||||||||||+.+|+|+.++|+..+.+.... ....+++++
T Consensus 42 ~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~ 121 (330)
T KOG0698|consen 42 GSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRA 121 (330)
T ss_pred eEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Confidence 455688899999999999887654322 22226899999999999999999999999999875432 268999999
Q ss_pred HH-HhhHHHHhhhcCCCcCCCCcEEEEEEeCC-eEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCCCCh
Q 020355 132 FR-KTDESLLQESVSGGWQDGATAVCIWILGR-TVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYP 209 (327)
Q Consensus 132 ~~-~~~~~l~~~~~~~~~~~GtT~~~~~i~~~-~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~~~~ 209 (327)
|. ++|..+... ......+|||++++++..+ ++||||+|||||+|++.+ | .+++||.||+|..+
T Consensus 122 F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~---~-----------~a~~Ls~DHkP~~~ 186 (330)
T KOG0698|consen 122 FLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKG---G-----------VAVQLSVDHKPDRE 186 (330)
T ss_pred HHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCC---C-----------eeeeCCCCCCCCcH
Confidence 99 699999876 2223567999988888855 999999999999999865 1 79999999999999
Q ss_pred hHHHHHHHcCCEEeeC---CeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccccChHHHHHHH
Q 020355 210 QERARIQKSGGTVSSN---GRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFV 286 (327)
Q Consensus 210 ~e~~ri~~~~~~v~~~---~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei~~~v 286 (327)
.|+.||+++||.|... .|++|.|++||+|||..+|.++++++|++....+.+.|+||||+||||||+|+++|++++|
T Consensus 187 ~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V 266 (330)
T KOG0698|consen 187 DERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLV 266 (330)
T ss_pred HHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHH
Confidence 9999999999999865 3999999999999999999777999999999999998999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020355 287 QKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 326 (327)
Q Consensus 287 ~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 326 (327)
+..+.....+..++..|...|+ .+++.||||||||+|.+
T Consensus 267 ~~~~~~~~~~~~a~~~l~~~a~-~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 267 RDELASISSPLAAAKLLATEAL-SRGSKDNITVVVVRLKS 305 (330)
T ss_pred HHHhhccccHHHHHHHHHHHHh-hcCCCCCeEEEEEEecC
Confidence 9876555678999999999997 79999999999999975
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=3.3e-51 Score=368.51 Aligned_cols=243 Identities=40% Similarity=0.615 Sum_probs=205.4
Q ss_pred eeeecccCCCCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcC----CchHHHHHHHHHH
Q 020355 58 ADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAG----LPPAKKAILDGFR 133 (327)
Q Consensus 58 ~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~----~~~~~~~l~~~~~ 133 (327)
+++.+.+|.|+.|||++++..+.... .......+|+|||||||+.+++++++.++..+.... ...+.++|..+|.
T Consensus 2 ~~~~~~~g~r~~~eD~~~~~~~~~~~-~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~ 80 (254)
T PF00481_consen 2 YGVSSMQGVRKEMEDRHLIIQNFNSN-SGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFL 80 (254)
T ss_dssp EEEEEEECTSSSHHEEEEEEEEETCC-TTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCeecCCCCCCcccCEEEEecCcccc-CCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceee
Confidence 67889999999999999988754322 345678999999999999999999999997665532 2247899999999
Q ss_pred H-hhHHHHhhhcC-CCcCCCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEE-EeCCCCCCCChh
Q 020355 134 K-TDESLLQESVS-GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAI-VVTRVHKAIYPQ 210 (327)
Q Consensus 134 ~-~~~~l~~~~~~-~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~-~LT~DH~~~~~~ 210 (327)
+ ++..+...... ....+|||++++++.++++|+|||||||||+++.+ ... +||+||+|.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~---------------~~~~~Lt~dH~~~~~~ 145 (254)
T PF00481_consen 81 AFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG---------------GIIKQLTRDHKPSNPD 145 (254)
T ss_dssp HHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT---------------EEEEESS---STTSHH
T ss_pred ecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeecc---------------ccccccccccccchhh
Confidence 9 88888763221 45678999999999999999999999999999998 666 999999999999
Q ss_pred HHHHHHHcCCEEeeCCeecCeeecccccccccCCC---CCeeecCceeEEEecCCCeEEEEEcCCcccccChHHHHHHHH
Q 020355 211 ERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKK---FGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQ 287 (327)
Q Consensus 211 e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~---~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei~~~v~ 287 (327)
|+.||+++||.+...+|+.|.|.+||+|||..+|+ ++++++|+|..+++.++|+|||||||||||+|+++|+++++.
T Consensus 146 E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~ 225 (254)
T PF00481_consen 146 ERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVR 225 (254)
T ss_dssp HHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHH
T ss_pred ccceeeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHH
Confidence 99999999999988889999999999999999998 789999999999999998899999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCCc
Q 020355 288 KLLKEGLSVTAVSRRLVREAVLERRCKDNC 317 (327)
Q Consensus 288 ~~~~~~~~~~~~a~~L~~~A~~~~g~~DNi 317 (327)
+....+..|+.+|+.|++.|+ ++|+.|||
T Consensus 226 ~~~~~~~~~~~~a~~L~~~A~-~~gs~DNi 254 (254)
T PF00481_consen 226 ESLNSGRSPQEAAEKLVDEAI-ARGSKDNI 254 (254)
T ss_dssp HHHHHHSHHHHHHHHHHHHHH-HTTHHSHE
T ss_pred HHHhcCCcHHHHHHHHHHHHH-hcCCCCCC
Confidence 988765579999999999998 79999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4e-46 Score=335.44 Aligned_cols=238 Identities=26% Similarity=0.381 Sum_probs=201.4
Q ss_pred cccceeeeecccCC-CCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCCch--------
Q 020355 53 FVEIEADAAEDKGS-RHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPP-------- 123 (327)
Q Consensus 53 ~~~i~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~~~-------- 123 (327)
.+.+.++..++.|. |..|||++++..+ ..... ..||+||||||||.++++|++.+++.+.+.....
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~----~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~ 79 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPN----ENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNES 79 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccc----cCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 35667778888887 8889999998753 12233 5799999999999999999999988776642221
Q ss_pred HHHHHHHHHHHhhHHHHhhhc--CCCcCCCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeC
Q 020355 124 AKKAILDGFRKTDESLLQESV--SGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVT 201 (327)
Q Consensus 124 ~~~~l~~~~~~~~~~l~~~~~--~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT 201 (327)
..+.|.+++..++..|..... .....||||++++++.++++|+|||||||+|++|++ .+++||
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~---------------~~~~lT 144 (262)
T COG0631 80 LEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG---------------ELKQLT 144 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC---------------ceEEec
Confidence 579999999999999998764 344679999999999999999999999999999999 999999
Q ss_pred CCCCCCChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccccChHH
Q 020355 202 RVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD 281 (327)
Q Consensus 202 ~DH~~~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~e 281 (327)
.||++.+..++.|+...++.... .|. +.+|||||+..+ ..|++....+.++ +|||||||||||.+++++
T Consensus 145 ~DH~~~~~~~~~~~~~~~~~~~~-~~~---~~ltralG~~~~------~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~ 213 (262)
T COG0631 145 EDHSLVNRLEQRGIITPEEARSH-PRR---NALTRALGDFDL------LEPDITELELEPG-DFLLLCSDGLWDVVSDDE 213 (262)
T ss_pred cCCcHHHHHHHhcCCCHHHHHhC-ccc---hhhhhhcCCCcc------cceeEEEEEcCCC-CEEEEECCCCccCcCHHH
Confidence 99999999999987777665543 222 389999998765 5899999999888 599999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020355 282 AVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 326 (327)
Q Consensus 282 i~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 326 (327)
+++++.. ..+|+++++.|++.|+ .+++.||+|+++|++..
T Consensus 214 i~~il~~----~~~~~~~~~~li~~a~-~~g~~DNiT~ilv~~~~ 253 (262)
T COG0631 214 IVDILKN----SETPQEAADKLIELAL-EGGGPDNITVVLVRLNG 253 (262)
T ss_pred HHHHHhc----CCCHHHHHHHHHHHHH-hcCCCCceEEEEEEeec
Confidence 9999875 4589999999999997 69999999999999753
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-44 Score=321.82 Aligned_cols=163 Identities=36% Similarity=0.630 Sum_probs=152.7
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCCCChhHHHHHHHcCCEEeeCCeec
Q 020355 150 DGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQ 229 (327)
Q Consensus 150 ~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~~~~~e~~ri~~~~~~v~~~~r~~ 229 (327)
+|||++||++.+++|||||.||||++++|+| +++-|+.||+|....|..||..+||.|.-+||++
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~G---------------kAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVN 394 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNG---------------KAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVN 394 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCC---------------ceeecccCCCcccHHHHHHHHhcCCeEeecceec
Confidence 4999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CeeecccccccccCCCC--------CeeecCceeEEEecCCCeEEEEEcCCcccccChHHHHHHHHHHHHcCCCHHHHHH
Q 020355 230 GRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSR 301 (327)
Q Consensus 230 g~l~~tRalGd~~~k~~--------~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~ 301 (327)
|.|.++|||||..||.. -+++-|+|....|++.|+|+||||||+|++|+.++++++|+..+..+..+..+|+
T Consensus 395 GGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~ice 474 (542)
T KOG0699|consen 395 GGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICE 474 (542)
T ss_pred CccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999852 3788999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHh-----CCCCCCcEEEEEEecCC
Q 020355 302 RLVREAVLE-----RRCKDNCTAIVIIFRHK 327 (327)
Q Consensus 302 ~L~~~A~~~-----~g~~DNiTvivv~l~~~ 327 (327)
.|++.++.. .-+.||+|||++.|..|
T Consensus 475 eL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 475 ELCDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHHHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 999999741 12579999999999754
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-44 Score=329.07 Aligned_cols=225 Identities=29% Similarity=0.398 Sum_probs=188.4
Q ss_pred CCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcC----------------------------
Q 020355 69 TMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAG---------------------------- 120 (327)
Q Consensus 69 ~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~---------------------------- 120 (327)
.-||++.+... ....|.|+||||||||..|+++++++|..++..+.
T Consensus 84 ~~edrv~~~~s------~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~ 157 (390)
T KOG0700|consen 84 AEEDRVSVAVS------EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWK 157 (390)
T ss_pred cccCcceeeee------ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhh
Confidence 35666655432 34577899999999999999999999999877211
Q ss_pred --------CchHHHHHHHHHHHhhHHHHhhhcC------CCcCCCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCC
Q 020355 121 --------LPPAKKAILDGFRKTDESLLQESVS------GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSN 186 (327)
Q Consensus 121 --------~~~~~~~l~~~~~~~~~~l~~~~~~------~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~ 186 (327)
...+.++|.+||.++++.+...... .-..+|||+++.++.+..|||||+|||||+|++..
T Consensus 158 ~~~~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~------ 231 (390)
T KOG0700|consen 158 QLSSADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVE------ 231 (390)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceec------
Confidence 1227899999999999999765321 11247999999999999999999999999998876
Q ss_pred CCccccCc-eeEEEeCCCCCCCChhHHHHHHHcCC---EEe--eCCeecCeeecccccccccCCC---------------
Q 020355 187 NHLDELSS-LKAIVVTRVHKAIYPQERARIQKSGG---TVS--SNGRLQGRLEVSRAFGDRQFKK--------------- 245 (327)
Q Consensus 187 ~~~~~~~~-~~~~~LT~DH~~~~~~e~~ri~~~~~---~v~--~~~r~~g~l~~tRalGd~~~k~--------------- 245 (327)
..+. |.++|||.||+..+++|+.||+.+|+ .+. .++|+.|.|.+||||||.++|+
T Consensus 232 ----~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~ 307 (390)
T KOG0700|consen 232 ----NNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIP 307 (390)
T ss_pred ----CCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCC
Confidence 2333 79999999999999999999999995 233 3359999999999999999885
Q ss_pred -----CCeeecCceeEEEecCCCeEEEEEcCCcccccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 020355 246 -----FGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVL 309 (327)
Q Consensus 246 -----~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~ 309 (327)
|+++++|+|+.++|.|+|.|||||||||||+|+++|++++|..++....+-+.+|+.|++.|+.
T Consensus 308 ~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~ 376 (390)
T KOG0700|consen 308 YIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALG 376 (390)
T ss_pred CCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999876533556789999999984
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4.3e-40 Score=295.52 Aligned_cols=243 Identities=40% Similarity=0.607 Sum_probs=207.2
Q ss_pred cceeeeecccCCCCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCCc------hHHHHH
Q 020355 55 EIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP------PAKKAI 128 (327)
Q Consensus 55 ~i~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~~------~~~~~l 128 (327)
.+.++..+.+|.|..|||++++.... ..+..+|+|||||||+.+|+++++.+...+...... .+...|
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~------~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDL------SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEAL 78 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccC------CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHH
Confidence 45667778888999999999886431 135689999999999999999999999888764321 377889
Q ss_pred HHHHHHhhHHHHhhhcCC--CcCCCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCC
Q 020355 129 LDGFRKTDESLLQESVSG--GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA 206 (327)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~--~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~ 206 (327)
.+++..++..+....... ...+|||++++++..++++++|+||||+|+++++ ++.++|.||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------~~~~lt~dh~~ 143 (255)
T smart00332 79 RKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------KAVQLTEDHKP 143 (255)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC---------------ceeEcCCCCCC
Confidence 999999999998765432 2468999999999999999999999999999998 89999999999
Q ss_pred CChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccccChHHHHHHH
Q 020355 207 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFV 286 (327)
Q Consensus 207 ~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei~~~v 286 (327)
.++.|..||...++.+. .++.++.+.+||++|+..+|+. +..+|++...++.+.+++|||||||||++++++++.+++
T Consensus 144 ~~~~~~~~i~~~~~~~~-~~~~~~~~~lt~~~g~~~~~~~-i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~ 221 (255)
T smart00332 144 SNEDERARIEAAGGFVI-NGRVNGVLALSRAIGDFFLKPY-VSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIV 221 (255)
T ss_pred cCHHHHHHHHHcCCEEE-CCeECCeEecccccCCHhhcCC-eEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHH
Confidence 99999999999999886 4588888999999999888854 889999999997334449999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 020355 287 QKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVI 322 (327)
Q Consensus 287 ~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv 322 (327)
...... .++.++|+.|++.|. .++..||+|+|||
T Consensus 222 ~~~~~~-~~~~~~~~~l~~~a~-~~~~~Dn~T~ivv 255 (255)
T smart00332 222 RKHLSK-SDPEEAAKRLIDLAL-ARGSKDNITVIVV 255 (255)
T ss_pred HHHhhc-CCHHHHHHHHHHHHH-HcCCCCCeEEEEC
Confidence 876432 358999999999997 6899999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=8.1e-40 Score=293.11 Aligned_cols=243 Identities=37% Similarity=0.610 Sum_probs=205.6
Q ss_pred eeeeecccCCCCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCC-------chHHHHHH
Q 020355 57 EADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL-------PPAKKAIL 129 (327)
Q Consensus 57 ~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~-------~~~~~~l~ 129 (327)
.++..+..|.|+.|||++++..... ..++.+|+|||||||+..++++++.+...+.+... ..+...|.
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~-----~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~ 76 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLN-----NEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALR 76 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCC-----CCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 3567788888999999999864321 03568999999999999999999999888766432 23667899
Q ss_pred HHHHHhhHHHHhhhcC--CCcCCCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCCC
Q 020355 130 DGFRKTDESLLQESVS--GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 207 (327)
Q Consensus 130 ~~~~~~~~~l~~~~~~--~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~~ 207 (327)
++|..+++.+...... ....+|||++++++..+.++++|+||||+|+++++ +++++|.||++.
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~---------------~~~~lt~dh~~~ 141 (254)
T cd00143 77 KAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG---------------EAVQLTKDHKPV 141 (254)
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------------ceeEcCCCCCCc
Confidence 9999999999876542 34568999999999999999999999999999999 999999999998
Q ss_pred ChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCCCeeecCceeEEEe-cCCCeEEEEEcCCcccccChHHHHHHH
Q 020355 208 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGVFGPSDAVEFV 286 (327)
Q Consensus 208 ~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l-~~~d~~lvLaSDGlwd~l~~~ei~~~v 286 (327)
++.+..||...++.+. ..+.++...+||+||+..+|+. +..+|++...++ .++| +|||||||||+.++++++.+++
T Consensus 142 ~~~~~~~i~~~~~~~~-~~~~~~~~~~t~~lG~~~~~~~-~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~ 218 (254)
T cd00143 142 NEEERERIEKAGGRVS-NGRVPGVLAVTRALGDFDLKPG-VSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIV 218 (254)
T ss_pred ChHHHHHHHHcCCcEE-eCEEcCceeeccccCCccccCC-EEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHH
Confidence 8999999999998764 4566778899999999988854 788999999999 5555 9999999999999999999998
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 020355 287 QKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIF 324 (327)
Q Consensus 287 ~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l 324 (327)
...... .+++++|+.|++.|. .+++.||+|+||++|
T Consensus 219 ~~~~~~-~~~~~~a~~l~~~a~-~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 219 RSELAK-EDLQEAAQELVDLAL-RRGSHDNITVVVVRL 254 (254)
T ss_pred HHHhcc-cCHHHHHHHHHHHHH-hCCCCCCEEEEEEeC
Confidence 765321 368999999999997 688999999999975
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=7.3e-41 Score=329.88 Aligned_cols=247 Identities=21% Similarity=0.252 Sum_probs=177.6
Q ss_pred ccceeeeecccCC-CCCCCceEEEeccCCCC-CCC---CCcceEEEEEcCCCchhHHHHHHHHHHHHH----HHcCCc--
Q 020355 54 VEIEADAAEDKGS-RHTMEDASVVLVDASSD-SPP---NLRCAHFAIFDGHGGRLAAEYAQKRLHANV----ISAGLP-- 122 (327)
Q Consensus 54 ~~i~~~~~s~~G~-R~~nED~~~~~~~~~~~-~~~---~~~~~lf~V~DGhGG~~as~~a~~~l~~~l----~~~~~~-- 122 (327)
+.++++.++++|. |+.|||++.+..+.... .+. .....+|+|||||||+.+++.||+.+++.+ .+....
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4578899999997 99999998765432110 011 123468999999998887666665554443 322111
Q ss_pred hHHHHHHHHHHHhhHHHHhhhcC----CCcCCCCcEEEEEEeCCeEEEEEeCCceEEEEE-eccCCCCCCCccccCceeE
Q 020355 123 PAKKAILDGFRKTDESLLQESVS----GGWQDGATAVCIWILGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKA 197 (327)
Q Consensus 123 ~~~~~l~~~~~~~~~~l~~~~~~----~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r-~~~~~g~~~~~~~~~~~~~ 197 (327)
.....|.++|..+|+.|.+.... ....||||++++++.++++||+||||||+|+++ ++ ++
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g---------------~l 517 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKG---------------GL 517 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCC---------------eE
Confidence 24677999999999999875322 334689999999999999999999999999985 56 89
Q ss_pred EEeCCCCCCCChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccc-
Q 020355 198 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGV- 276 (327)
Q Consensus 198 ~~LT~DH~~~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~- 276 (327)
++||+||++.....+..+....+. .+ ++.+.+|||||+...+. .+|++..+.+.++ ++||||||||||.
T Consensus 518 ~QLT~DHs~~~~lv~~Gi~~~~a~----~~-p~~~~LTrALG~~~~~~----l~Pdi~~~~L~~g-D~lLLCSDGL~D~~ 587 (645)
T PRK14559 518 EQLTVDHEVGQREIQRGVEPQIAY----AR-PDAYQLTQALGPRDNSA----IQPDIQFLEIEED-TLLLLCSDGLSDND 587 (645)
T ss_pred EEeCCCCCHHHHHHHhCCCHHHHh----cC-cccceeeeccCCCCCCc----ccceEEEEEcCCC-CEEEEECCCCCCCc
Confidence 999999998543222211111111 12 34678999999865443 3899999999765 4999999999994
Q ss_pred cChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020355 277 FGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 326 (327)
Q Consensus 277 l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 326 (327)
+.+....+.+...+....+++++|++|++.|+ .+|+.||||||||++..
T Consensus 588 ~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al-~~gg~DNITvIvV~l~~ 636 (645)
T PRK14559 588 LLETHWQTHLLPLLSSSANLDQGLNKLIDLAN-QYNGHDNITAILVRLKV 636 (645)
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCCCcEEEEEEEecc
Confidence 23333334444555556689999999999997 79999999999999863
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.98 E-value=5.8e-31 Score=232.65 Aligned_cols=222 Identities=26% Similarity=0.403 Sum_probs=177.5
Q ss_pred CCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCCc------------------------------------------hH
Q 020355 87 NLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP------------------------------------------PA 124 (327)
Q Consensus 87 ~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~~------------------------------------------~~ 124 (327)
..++++|.+||||.|..++-.|++.+...+.++... .+
T Consensus 141 ~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LV 220 (493)
T KOG1323|consen 141 RADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLV 220 (493)
T ss_pred CCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhh
Confidence 346789999999999999988888777655432110 07
Q ss_pred HHHHHHHHHHhhHHHHhhhcCCCcCCCCcEEEEEEeCCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCC
Q 020355 125 KKAILDGFRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVH 204 (327)
Q Consensus 125 ~~~l~~~~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH 204 (327)
..+|..||..+|+.|..+....+...|||+++++..-++||+||.|||||+++|++ .+++|+.+.
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnd---------------eirplS~ef 285 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRND---------------EIRPLSKEF 285 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecC---------------Ceeeccccc
Confidence 78999999999999998877777778999999999999999999999999999999 999999999
Q ss_pred CCCChhHHHHHHHcCC--------EE-------------------------------------------e---eCCeecC
Q 020355 205 KAIYPQERARIQKSGG--------TV-------------------------------------------S---SNGRLQG 230 (327)
Q Consensus 205 ~~~~~~e~~ri~~~~~--------~v-------------------------------------------~---~~~r~~g 230 (327)
+| +.|++||+...- .. . ...|+.+
T Consensus 286 TP--etERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~ 363 (493)
T KOG1323|consen 286 TP--ETERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLA 363 (493)
T ss_pred Cc--HHHHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhh
Confidence 98 458888886541 00 0 0236677
Q ss_pred eeecccccccccCCC--------CCeeecCceeEEEec----CCCeEEEEEcCCcccccChHHHHHHHHHHHHcC--CCH
Q 020355 231 RLEVSRAFGDRQFKK--------FGVVATPDIHSFEVT----ERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEG--LSV 296 (327)
Q Consensus 231 ~l~~tRalGd~~~k~--------~~v~~~p~i~~~~l~----~~d~~lvLaSDGlwd~l~~~ei~~~v~~~~~~~--~~~ 296 (327)
.+.+||.|||..+|- |-+++.|+|..+.+. ..|+++||+||||||+++++|+..++...+... .+|
T Consensus 364 TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp 443 (493)
T KOG1323|consen 364 TIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADP 443 (493)
T ss_pred hheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCCh
Confidence 889999999998762 237889999999986 256699999999999999999999999887543 233
Q ss_pred ---HHHHHHHHHHHHH------------hCCCCCCcEEEEEEec
Q 020355 297 ---TAVSRRLVREAVL------------ERRCKDNCTAIVIIFR 325 (327)
Q Consensus 297 ---~~~a~~L~~~A~~------------~~g~~DNiTvivv~l~ 325 (327)
..+|+.|+..|-- ..|+.|+|||.||-|.
T Consensus 444 ~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 444 SRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred hHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence 4677788776621 1357899999999764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=6.2e-24 Score=210.09 Aligned_cols=244 Identities=23% Similarity=0.329 Sum_probs=205.8
Q ss_pred cccceeeeecccCCCCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCC--chHHHHHHH
Q 020355 53 FVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL--PPAKKAILD 130 (327)
Q Consensus 53 ~~~i~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~--~~~~~~l~~ 130 (327)
.+...+|++...|+|.++.-+.....++. ....+.||.+||-+......++...+.+++.++.. .+-.+.|..
T Consensus 519 ~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~-----~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~ 593 (1081)
T KOG0618|consen 519 AFLWTYGVAGVSGQRNKVCSRAVWVENFF-----LNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRN 593 (1081)
T ss_pred eeheeeccchhcccccchhhhhhhhhhcc-----cCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 34566999999999999988876655431 12336899999999999999999999998887532 223455999
Q ss_pred HHHHhhHHHHhhhcCCCcCCCCcEEEEEEeC--------CeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCC
Q 020355 131 GFRKTDESLLQESVSGGWQDGATAVCIWILG--------RTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTR 202 (327)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~--------~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~ 202 (327)
+|..+++++..++. ..|..++.+.+.. .++.+||+|+|.++++++| +..++|+
T Consensus 594 ~fl~~~rklg~~g~----~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng---------------~~~p~t~ 654 (1081)
T KOG0618|consen 594 TFLRLNRKLGEEGQ----VLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNG---------------KPLPTTR 654 (1081)
T ss_pred HHHHHhhhhhhhhc----cccchhhheeecccccCcccchhhhHhhhccchhhhhhcC---------------CcCcccc
Confidence 99999999965533 3466666666653 3789999999999999999 7777777
Q ss_pred CC-CCCChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccccChHH
Q 020355 203 VH-KAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD 281 (327)
Q Consensus 203 DH-~~~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~e 281 (327)
-. ...+++|.+||+..+|.+..+++++|....||++|.+...+. +.+.|+|....|++.|+|||+++-+||++|+-++
T Consensus 655 ~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~-v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~ 733 (1081)
T KOG0618|consen 655 SPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFPH-VLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDT 733 (1081)
T ss_pred cccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccccc-ccCCCceeeEecccCceEEEEcchHHhhhccHHH
Confidence 65 446899999999999999999999999999999999888875 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020355 282 AVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 326 (327)
Q Consensus 282 i~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 326 (327)
+++.+++ ..+|-.+|++|++.|. +.|+.||++|+||+|..
T Consensus 734 a~~~vRn----~~dpL~AAkKL~d~Aq-SYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 734 AVDAVRN----VEDPLLAAKKLCDLAQ-SYGCAENVSVLVVRLNH 773 (1081)
T ss_pred HHHHHhc----CCchHHHHHHHHHHHH-hcccccCeeEEEEEeec
Confidence 9999873 3478999999999996 89999999999999864
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.89 E-value=2e-21 Score=172.27 Aligned_cols=203 Identities=19% Similarity=0.235 Sum_probs=141.1
Q ss_pred CCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhH----HHHHHHHHHHHHHHc------CCchHHHHHHHHHHHhhHH
Q 020355 69 TMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLA----AEYAQKRLHANVISA------GLPPAKKAILDGFRKTDES 138 (327)
Q Consensus 69 ~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~a----s~~a~~~l~~~l~~~------~~~~~~~~l~~~~~~~~~~ 138 (327)
.-||++++..+ ....+.|||||+|||.- +...++.|+.+..+. ....+...|.+++.++-..
T Consensus 90 ~GEDa~Fvss~--------~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~ 161 (330)
T KOG1379|consen 90 GGEDAWFVSSN--------PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ 161 (330)
T ss_pred CCCcceeeccC--------cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc
Confidence 46899998643 34478999999998754 344455555544331 1223777777777665431
Q ss_pred HHhhhcCCCcCCCCcEEEEEEe--CCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCC--CChhHHHH
Q 020355 139 LLQESVSGGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA--IYPQERAR 214 (327)
Q Consensus 139 l~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~--~~~~e~~r 214 (327)
+...-.+||++++.+. +++||+||+|||-..++|+| ++++-|..+.. ..|.+..
T Consensus 162 ------~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G---------------~vv~~S~~Q~H~FN~PyQLs- 219 (330)
T KOG1379|consen 162 ------KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREG---------------KVVFRSPEQQHYFNTPYQLS- 219 (330)
T ss_pred ------CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECC---------------EEEEcCchheeccCCceeec-
Confidence 1222357888888888 78999999999999999999 99988877643 1111000
Q ss_pred HHHcCCEEeeCCeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccccChHHHHHHHHHHHH-cC
Q 020355 215 IQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLK-EG 293 (327)
Q Consensus 215 i~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei~~~v~~~~~-~~ 293 (327)
+.+. ...-.++| .....+.+.+.+.++| +||||||||||.|.+++|.+++..... ..
T Consensus 220 -------------~~p~-~~~~~~~d-------~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~ 277 (330)
T KOG1379|consen 220 -------------SPPE-GYSSYISD-------VPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGN 277 (330)
T ss_pred -------------cCCc-cccccccC-------CccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhcccc
Confidence 0000 00111222 1123467888898887 999999999999999999999998876 67
Q ss_pred CCHHHHHHHHHHHHHH----------------------hCCCCCCcEEEEEE
Q 020355 294 LSVTAVSRRLVREAVL----------------------ERRCKDNCTAIVII 323 (327)
Q Consensus 294 ~~~~~~a~~L~~~A~~----------------------~~g~~DNiTvivv~ 323 (327)
.+++..|+.|++.|.. ..|..|+||+||..
T Consensus 278 ~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 278 LDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred ccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 8899999999999853 12458999999975
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.84 E-value=7.3e-20 Score=160.06 Aligned_cols=179 Identities=19% Similarity=0.208 Sum_probs=93.6
Q ss_pred ecccCCCCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHH----HHHHHHHHHHHHHcCCchH----HHHHHHHH
Q 020355 61 AEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAA----EYAQKRLHANVISAGLPPA----KKAILDGF 132 (327)
Q Consensus 61 ~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as----~~a~~~l~~~l~~~~~~~~----~~~l~~~~ 132 (327)
.+++|.|..|||++.+... .+..+++||||+||...+ +.+++.+..++........ ...+..+.
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--------~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~ 74 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--------DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIK 74 (212)
T ss_dssp ----TTSSS--EEEEEE-T--------CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC--------CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 5789999999999986532 233677999999965554 4455555555555443321 12222222
Q ss_pred HHhhHHH-----HhhhcCCCcCCCCcEEEEEEeCCeEEEEEeCCceEEEE-EeccCCCCCCCccccCceeEEEeCCCCCC
Q 020355 133 RKTDESL-----LQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVA-RSSIVDGSNNHLDELSSLKAIVVTRVHKA 206 (327)
Q Consensus 133 ~~~~~~l-----~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~-r~~~~~g~~~~~~~~~~~~~~~LT~DH~~ 206 (327)
..+...+ ...........+||++++++.++.++++|+||||+|+. +++ .+..++.||+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g---------------~~~~l~~~~~~ 139 (212)
T PF13672_consen 75 KEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNG---------------EIQQLTDDHSG 139 (212)
T ss_dssp HHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETT---------------EEEE-S---BH
T ss_pred HHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCC---------------EEEEcCCCccc
Confidence 2322211 11112233456899999999999999999999999765 555 89999999963
Q ss_pred CChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccccChHH-HHHH
Q 020355 207 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-AVEF 285 (327)
Q Consensus 207 ~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~e-i~~~ 285 (327)
. .. ..++.+..... ....++..+++.+++ .|+|||||||+.+...+ +..+
T Consensus 140 ~----~~-------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~ 190 (212)
T PF13672_consen 140 E----YP-------------------NQTRSLTGDDP-----EPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQF 190 (212)
T ss_dssp H----HH-------------------HCTTSCCHHCC-----CTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH
T ss_pred h----hh-------------------hhhhccCcccc-----ccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHH
Confidence 1 11 01333332211 112344555555565 89999999999998655 6666
Q ss_pred HHHHHH
Q 020355 286 VQKLLK 291 (327)
Q Consensus 286 v~~~~~ 291 (327)
+....+
T Consensus 191 l~~~~~ 196 (212)
T PF13672_consen 191 LKDLWN 196 (212)
T ss_dssp ------
T ss_pred hhhccc
Confidence 655543
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.79 E-value=8.5e-18 Score=144.81 Aligned_cols=175 Identities=19% Similarity=0.162 Sum_probs=126.4
Q ss_pred CCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhHHHHhhhcCCC
Q 020355 68 HTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPPAKKAILDGFRKTDESLLQESVSGG 147 (327)
Q Consensus 68 ~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 147 (327)
...-|.+.+... ..+..+|+|+||||+...|.+++..+...+....... ..+.+.+..+|+.+... ..
T Consensus 15 ~~~GD~~~~~~~-------~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~--~~~~~~l~~~n~~l~~~---~~ 82 (193)
T smart00331 15 QVGGDFYDVVKL-------PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG--ISLSQILERLNRAIYEN---GE 82 (193)
T ss_pred hcCccEEEEEEe-------CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhc---CC
Confidence 446677766532 1224789999999988888888888887776542221 23566777788777665 23
Q ss_pred cCCCCcEEEEEE--eCCeEEEEEeCCceEEEEE-eccCCCCCCCccccCceeEEEeCCCCCCCChhHHHHHHHcCCEEee
Q 020355 148 WQDGATAVCIWI--LGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSS 224 (327)
Q Consensus 148 ~~~GtT~~~~~i--~~~~l~vanvGDSRa~l~r-~~~~~g~~~~~~~~~~~~~~~LT~DH~~~~~~e~~ri~~~~~~v~~ 224 (327)
..+|+|++++++ ..++++++|+||+|+|+++ ++ ...+++.+.
T Consensus 83 ~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~---------------~~~~~~~~~-------------------- 127 (193)
T smart00331 83 DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADG---------------GLVEDLDDL-------------------- 127 (193)
T ss_pred CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCC---------------CeEEEcCCC--------------------
Confidence 357999999988 5779999999999999999 44 444555442
Q ss_pred CCeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccccChHHHHHHHHHHHHcCCCHHHHHHHHH
Q 020355 225 NGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLV 304 (327)
Q Consensus 225 ~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~ 304 (327)
++.+|... ..++++..+.+.++| .|+|+||||||.++.+++.+++.+.. ..++++++++++
T Consensus 128 ----------~~~lG~~~------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~ 188 (193)
T smart00331 128 ----------GAPLGLEP------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRIL 188 (193)
T ss_pred ----------CceeeeCC------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 34556322 123566777887877 89999999999999999988888754 347899999988
Q ss_pred HHHH
Q 020355 305 REAV 308 (327)
Q Consensus 305 ~~A~ 308 (327)
+.++
T Consensus 189 ~~~~ 192 (193)
T smart00331 189 EELL 192 (193)
T ss_pred HHHh
Confidence 8764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.66 E-value=6.6e-15 Score=150.40 Aligned_cols=201 Identities=15% Similarity=0.086 Sum_probs=133.9
Q ss_pred ccceeeee-cccCCCCCCCceEEEeccCCCCCCCCCcceEEEEEcCCCchhHHHHHHHHHHHHHH---HcCCchHHHHHH
Q 020355 54 VEIEADAA-EDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVI---SAGLPPAKKAIL 129 (327)
Q Consensus 54 ~~i~~~~~-s~~G~R~~nED~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~as~~a~~~l~~~l~---~~~~~~~~~~l~ 129 (327)
+.+.+|.+ ..++.+..+.|.+.+... .....+++|+||+|....|..++..+...+. ....+ ..
T Consensus 550 ~~~~~g~a~~~k~g~~vsGD~y~~~~l-------~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~-----~~ 617 (764)
T TIGR02865 550 YHVSTGVARAAKDGELVSGDSYSFGKL-------SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD-----RE 617 (764)
T ss_pred eeehhhHHHhcCCCCcccCceEEEEEE-------CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC-----HH
Confidence 45555554 344457788999877542 1123678999999954444455544444332 22222 25
Q ss_pred HHHHHhhHHHHhhhcCCCcCCCCcEEEEEEe--CCeEEEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCCC
Q 020355 130 DGFRKTDESLLQESVSGGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 207 (327)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~~ 207 (327)
.++..+|..+... ....+.+|+.+++++ .+++.++|+|+++.|+.|++ .+.+++..+.|
T Consensus 618 ~ai~~lN~~L~~~---~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~---------------~v~~i~s~~lP- 678 (764)
T TIGR02865 618 VAIKTVNSILSLR---STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA---------------KVEVIRSSNLP- 678 (764)
T ss_pred HHHHHHHHHHHhC---CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECC---------------EEEEecCCCce-
Confidence 5667777766543 222468999988885 57899999999999999987 88888654322
Q ss_pred ChhHHHHHHHcCCEEeeCCeecCeeecccccccccCCCCCeeecCceeEEEecCCCeEEEEEcCCcccccChHH-----H
Q 020355 208 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-----A 282 (327)
Q Consensus 208 ~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~e-----i 282 (327)
+|-. -..+++....++.++| +|||+||||||..++.+ +
T Consensus 679 ------------------------------lGil------~~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l 721 (764)
T TIGR02865 679 ------------------------------IGIL------DEVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWL 721 (764)
T ss_pred ------------------------------eEec------cCCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHH
Confidence 2210 0124566777888887 89999999999887543 4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CCCCcEEEEEEe
Q 020355 283 VEFVQKLLKEGLSVTAVSRRLVREAVLERR--CKDNCTAIVIIF 324 (327)
Q Consensus 283 ~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g--~~DNiTvivv~l 324 (327)
.+++... ...+|+++++.|++.|....+ ..||+|++++++
T Consensus 722 ~~~l~~~--~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 722 VRKLKET--NTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 4444322 235799999999999974222 489999999987
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.53 E-value=1.6e-12 Score=111.62 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=108.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHHHHHHH---HHcCCchHHHHHHHHHHHhhHHHHhhhcCCCcCCCCcEEEEEEe--CCeE
Q 020355 90 CAHFAIFDGHGGRLAAEYAQKRLHANV---ISAGLPPAKKAILDGFRKTDESLLQESVSGGWQDGATAVCIWIL--GRTV 164 (327)
Q Consensus 90 ~~lf~V~DGhGG~~as~~a~~~l~~~l---~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l 164 (327)
.++++|+|++|-...|.+.+..+...+ ...... ..+.+..+|+.+....... ...+|++++.++ .+++
T Consensus 4 ~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~-----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 4 RYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD-----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTL 76 (193)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS-----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEE
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEE
Confidence 467899999994333344443333333 232222 5566677777775543322 357888888775 4589
Q ss_pred EEEEeCCceEEEEEeccCCCCCCCccccCceeEEEeCCCCCCCChhHHHHHHHcCCEEeeCCeecCeeecccccccccCC
Q 020355 165 FVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFK 244 (327)
Q Consensus 165 ~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~DH~~~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~~~k 244 (327)
+++|+|++++++++.+. + ....+.....+ +|-..-
T Consensus 77 ~~~~aG~~~~l~~~~~~--~-----------~~~~~~~~~~~-------------------------------lG~~~~- 111 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGG--R-----------EIEQLESEGPP-------------------------------LGIFED- 111 (193)
T ss_dssp EEEEESSSEEEEEETTC--T-----------EEEEETCSSBB-------------------------------CSSSCT-
T ss_pred EEeCCCCCCEEEEeccc--c-----------ceeecccCccc-------------------------------eeeecc-
Confidence 99999999999999940 0 44444332221 332111
Q ss_pred CCCeeecCceeEEEecCCCeEEEEEcCCcccccChHHH-------HHHHHHHHHcCCCHHHHHHHHHHHHHH--hCCCCC
Q 020355 245 KFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDA-------VEFVQKLLKEGLSVTAVSRRLVREAVL--ERRCKD 315 (327)
Q Consensus 245 ~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei-------~~~v~~~~~~~~~~~~~a~~L~~~A~~--~~g~~D 315 (327)
..+....+++.++| .|+|+||||+|....+.- .+++.+. ...+++++++.|++.+.. .....|
T Consensus 112 -----~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~D 183 (193)
T PF07228_consen 112 -----IDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRD 183 (193)
T ss_dssp -----TCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS
T ss_pred -----ccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 12334556676766 899999999999844432 3333322 445799999999998863 236899
Q ss_pred CcEEEEEEec
Q 020355 316 NCTAIVIIFR 325 (327)
Q Consensus 316 NiTvivv~l~ 325 (327)
|+|+++++++
T Consensus 184 D~tvl~~~~~ 193 (193)
T PF07228_consen 184 DITVLVIRRQ 193 (193)
T ss_dssp -EEEEEEEE-
T ss_pred ceEEEEEEEC
Confidence 9999999975
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.38 E-value=3.5e-05 Score=73.11 Aligned_cols=176 Identities=16% Similarity=0.136 Sum_probs=109.3
Q ss_pred cceEEEEEcCCC-chhHHHHHHHH--HHHHHHHcCCchHHHHHHHHHHHhhHHHHhhhcCCCcCCCCcEEEEEEe--CCe
Q 020355 89 RCAHFAIFDGHG-GRLAAEYAQKR--LHANVISAGLPPAKKAILDGFRKTDESLLQESVSGGWQDGATAVCIWIL--GRT 163 (327)
Q Consensus 89 ~~~lf~V~DGhG-G~~as~~a~~~--l~~~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~ 163 (327)
....++|.|.+| |-.+|-..+.. +.+.+.......+ ...+..+|+.+....... +=+|+..++++ ...
T Consensus 174 ~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~~~~p----~~~l~~~n~~~~~~~~~~---~f~T~~~~~~d~~~~~ 246 (367)
T COG2208 174 KRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDP----ADVLETLNRVLKQNLEED---MFVTLFLGVYDLDSGE 246 (367)
T ss_pred cEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcccCCH----HHHHHHHHHHHHhcccCC---cEEEEEEEEEeccCCE
Confidence 457889999999 77666552211 1112222211112 344555565555443221 45666666664 568
Q ss_pred EEEEEeCCceEEEEEeccCCCCCCCccccCcee--EEEeCCCCCCCChhHHHHHHHcCCEEeeCCeecCeeecccccccc
Q 020355 164 VFVANIGDAKAVVARSSIVDGSNNHLDELSSLK--AIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDR 241 (327)
Q Consensus 164 l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~--~~~LT~DH~~~~~~e~~ri~~~~~~v~~~~r~~g~l~~tRalGd~ 241 (327)
+..+++|---+++++.+. . ...++ ....++|-.
T Consensus 247 l~y~~aGH~p~~i~~~~~--------------~~~~~~l~-------------------------------~~g~piG~~ 281 (367)
T COG2208 247 LTYSNAGHEPALILSADG--------------EIEVEDLT-------------------------------ALGLPIGLL 281 (367)
T ss_pred EEEeeCCCCCeeEEEcCC--------------CceeEEcc-------------------------------CCCceeeec
Confidence 999999999999888861 1 11111 344556632
Q ss_pred cCCCCCeeecCceeEEEecCCCeEEEEEcCCccc-------ccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---hC
Q 020355 242 QFKKFGVVATPDIHSFEVTERDHFIILGCDGLWG-------VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVL---ER 311 (327)
Q Consensus 242 ~~k~~~v~~~p~i~~~~l~~~d~~lvLaSDGlwd-------~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~---~~ 311 (327)
. ...+.+....+.++| .++|.|||++| .+..+....++.+. ...+++++++.+.+.... ..
T Consensus 282 ~------~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~~l~~~~~~~ 352 (367)
T COG2208 282 P------DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILESLEELQGDQ 352 (367)
T ss_pred C------CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhCCc
Confidence 1 224556677787865 99999999998 56667777777653 344788888888777643 12
Q ss_pred CCCCCcEEEEEEec
Q 020355 312 RCKDNCTAIVIIFR 325 (327)
Q Consensus 312 g~~DNiTvivv~l~ 325 (327)
...||+|++++++.
T Consensus 353 ~~~DDiTll~lk~~ 366 (367)
T COG2208 353 IQDDDITLLVLKVK 366 (367)
T ss_pred cccCceEEEEEEec
Confidence 34688999999975
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=66.74 E-value=7.3 Score=32.87 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=36.2
Q ss_pred CeEEEEEcCCcc-----------cccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Q 020355 263 DHFIILGCDGLW-----------GVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERR 312 (327)
Q Consensus 263 d~~lvLaSDGlw-----------d~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g 312 (327)
|+-+|..|.|+| |+|.++...+.+..-..+-.-|.++|+.|++.-. .||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq-~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQ-RRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHH-hcC
Confidence 347888888888 7788888777776544445568999999999875 344
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=48.90 E-value=11 Score=26.72 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=14.0
Q ss_pred cCCCeEEEEEcCCcccccC
Q 020355 260 TERDHFIILGCDGLWGVFG 278 (327)
Q Consensus 260 ~~~d~~lvLaSDGlwd~l~ 278 (327)
...+..+|+++||+|=-+.
T Consensus 24 ~~~G~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 24 ERPGHRLLVASNGVFLEVR 42 (72)
T ss_pred ccCCcEEEEecCcEEEEEe
Confidence 3345578899999997554
No 22
>PRK10693 response regulator of RpoS; Provisional
Probab=48.54 E-value=1.8e+02 Score=26.58 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=30.2
Q ss_pred HHHHHHHhhHHHHhhhcCCCcCCCCcEEEEEEeC--CeEEEEEeCCceEEE
Q 020355 128 ILDGFRKTDESLLQESVSGGWQDGATAVCIWILG--RTVFVANIGDAKAVV 176 (327)
Q Consensus 128 l~~~~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~--~~l~vanvGDSRa~l 176 (327)
....+..+|+.+....... .-|+..++++. +++.+++.|-...++
T Consensus 207 p~~~l~~lN~~l~~~~~~~----~~t~~~~~~d~~~~~l~~~~AGhp~~~~ 253 (303)
T PRK10693 207 LGALLKQVNHLLRQANLPG----QFPLLVGYYHRELKNLILVSAGLNATLN 253 (303)
T ss_pred HHHHHHHHHHHHHhcCCCc----eeeEEEEEEEcCCCeEEEEeCCCCCEEe
Confidence 3555667777776652211 24777777754 579999999999885
No 23
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=33.10 E-value=1e+02 Score=20.87 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 020355 278 GPSDAVEFVQKLLKEGLSVTAVSRRLVR 305 (327)
Q Consensus 278 ~~~ei~~~v~~~~~~~~~~~~~a~~L~~ 305 (327)
.-++....+++.++...+..++++.|.+
T Consensus 14 ~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~ 41 (68)
T PF05402_consen 14 TLNETAAFIWELLDGPRTVEEIVDALAE 41 (68)
T ss_dssp ---THHHHHHHH--SSS-HHHHHHHHHH
T ss_pred cccHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 3344555555555555566666655544
No 24
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=31.93 E-value=2.1e+02 Score=23.50 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCeEEEEEcCCcccccChH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC-CCcEEEEEEecC
Q 020355 262 RDHFIILGCDGLWGVFGPS----DAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCK-DNCTAIVIIFRH 326 (327)
Q Consensus 262 ~d~~lvLaSDGlwd~l~~~----ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~~g~~-DNiTvivv~l~~ 326 (327)
++.++++..|+.=.-++.. .+..+++.......+|.++.+.|-+......... --+|++++.++.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~ 71 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLDPEELLEALNRRLYRDLKGDNRYATACYAIIDP 71 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEET
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhccccceEEEEEecc
Confidence 4567888888654443333 3445555555677789999988777663333333 567888777654
No 25
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=29.00 E-value=2.6e+02 Score=21.36 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=39.8
Q ss_pred EcCCcccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 020355 269 GCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVIIF 324 (327)
Q Consensus 269 aSDGlwd~l~~~ei~~~v~~~~~~~--~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l 324 (327)
.+|.+-+.++..++.+.+.....+. ...+.+|+.+++..+......+-+++-+-+.
T Consensus 42 ~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp 99 (116)
T TIGR00525 42 ESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKP 99 (116)
T ss_pred ccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeC
Confidence 5889999999999999998877643 3567788888887764333345555555443
No 26
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=28.03 E-value=1.2e+02 Score=21.77 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCcccccChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 020355 262 RDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVR 305 (327)
Q Consensus 262 ~d~~lvLaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~ 305 (327)
.+.++|+...| ++.-+++...|++.++...+..++++.|.+
T Consensus 15 ~~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~ 55 (81)
T TIGR03859 15 QDCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQ 55 (81)
T ss_pred cCcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHH
Confidence 34466666654 445566666677776666677777766644
No 27
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=27.97 E-value=2.2e+02 Score=21.86 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=38.3
Q ss_pred EcCCcccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 020355 269 GCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVI 322 (327)
Q Consensus 269 aSDGlwd~l~~~ei~~~v~~~~~~~--~~~~~~a~~L~~~A~~~~g~~DNiTvivv 322 (327)
+||-|-+.++...+.+.+.....+. ...+.+|+.+.+..+........+++-|-
T Consensus 43 ~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~v~~v~v~v~ 98 (118)
T cd00534 43 ESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPKVSAIKVKVE 98 (118)
T ss_pred ccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 6899999999999999998876543 35678888888888743233344444443
No 28
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=27.81 E-value=2.3e+02 Score=21.43 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=41.6
Q ss_pred cCCcccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEEE
Q 020355 270 CDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVII 323 (327)
Q Consensus 270 SDGlwd~l~~~ei~~~v~~~~~~~--~~~~~~a~~L~~~A~~~~g~~DNiTvivv~ 323 (327)
+|-+-+.++...+.+.+.....+. ...+.+|+.+++..+...+..+.+++-|-+
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~v~~v~v~v~K 96 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFPQVQSVTVKVRK 96 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTTESEEEEEEEE
T ss_pred ccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCCccEEEEEEEC
Confidence 588999999999999998887643 568899999999988655545555555544
No 29
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=27.01 E-value=2.6e+02 Score=22.44 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=27.7
Q ss_pred ecCceeEEEecCCCeEEEEEcCCcccccChHHHHHHHHHH
Q 020355 250 ATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKL 289 (327)
Q Consensus 250 ~~p~i~~~~l~~~d~~lvLaSDGlwd~l~~~ei~~~v~~~ 289 (327)
+.|.|....++++.--++-...|+|..++.++..++....
T Consensus 76 P~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 115 (157)
T PF14014_consen 76 PPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEA 115 (157)
T ss_pred CCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHH
Confidence 4677777777655444556888999988888776665543
No 30
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=25.55 E-value=2.7e+02 Score=20.43 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCcccccChHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHH
Q 020355 261 ERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEG----------LSVTAVSRRLVREAV 308 (327)
Q Consensus 261 ~~d~~lvLaSDGlwd~l~~~ei~~~v~~~~~~~----------~~~~~~a~~L~~~A~ 308 (327)
..|.|+||-.+-==.+++.+|+..-+..++... .+.++.|+.|++.++
T Consensus 8 ~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~C 65 (83)
T PF12095_consen 8 QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTAC 65 (83)
T ss_dssp ----EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH--
T ss_pred ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhce
Confidence 456678877655555899999998888887642 235678888888875
No 31
>PRK15322 invasion protein OrgB; Provisional
Probab=23.31 E-value=2.2e+02 Score=24.61 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=35.0
Q ss_pred CeEEEEEcCCcccccChHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q 020355 263 DHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLS-VTAVSRRLVREAV 308 (327)
Q Consensus 263 d~~lvLaSDGlwd~l~~~ei~~~v~~~~~~~~~-~~~~a~~L~~~A~ 308 (327)
+..+|+|||----.+|+++.++...+.+....+ ....|+.|-+.++
T Consensus 147 ~~rFV~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l 193 (210)
T PRK15322 147 EQRFIMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAI 193 (210)
T ss_pred CCceEEEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHH
Confidence 336777888888889999999988777655544 6778888777765
No 32
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=22.66 E-value=91 Score=28.31 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=18.7
Q ss_pred CcCCCCcEEEEEEeCCeEEEEEeCCc
Q 020355 147 GWQDGATAVCIWILGRTVFVANIGDA 172 (327)
Q Consensus 147 ~~~~GtT~~~~~i~~~~l~vanvGDS 172 (327)
+..+|||.+.+ +.++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 34579988776 78999999999976
No 33
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=21.77 E-value=4.6e+02 Score=21.56 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=40.3
Q ss_pred CCCeEEEEEcCCcccccChHHHHHHHHH----HHHcCCCHHHHHHHHHHHHHHhC-CCCCCcEEEEEEec
Q 020355 261 ERDHFIILGCDGLWGVFGPSDAVEFVQK----LLKEGLSVTAVSRRLVREAVLER-RCKDNCTAIVIIFR 325 (327)
Q Consensus 261 ~~d~~lvLaSDGlwd~l~~~ei~~~v~~----~~~~~~~~~~~a~~L~~~A~~~~-g~~DNiTvivv~l~ 325 (327)
+++.++++-.||.-.-+....+...+.. ......++.++.+.+-+... .. ....-+|++++.++
T Consensus 27 ~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~-~~~~~~~~~T~~~~~id 95 (193)
T smart00331 27 PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIY-ENGEDGMFATLFLALYD 95 (193)
T ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-hcCCCCcEEEEEEEEEE
Confidence 3445888899999877665555544433 33444568888877665553 33 34456788777763
No 34
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=21.18 E-value=1.8e+02 Score=19.84 Aligned_cols=26 Identities=8% Similarity=0.241 Sum_probs=20.8
Q ss_pred cChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 020355 277 FGPSDAVEFVQKLLKEGLSVTAVSRRLVR 305 (327)
Q Consensus 277 l~~~ei~~~v~~~~~~~~~~~~~a~~L~~ 305 (327)
-+++||...+... +.+|.+++++|+.
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 5788888887754 5689999999976
No 35
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.08 E-value=1.7e+02 Score=16.09 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=16.2
Q ss_pred EEEeCCeEEEEEeCCceEEEE
Q 020355 157 IWILGRTVFVANIGDAKAVVA 177 (327)
Q Consensus 157 ~~i~~~~l~vanvGDSRa~l~ 177 (327)
++-.++.+||+-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 334778999999999887654
Done!