Your job contains 1 sequence.
>020356
MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKG
ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML
SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ
LLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAK
CDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI
HDMLGSEFYVLVAESEAERRSLSKRKR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020356
(327 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014535 - symbol:RRP4 "AT1G03360" species:3702... 1137 2.4e-115 1
DICTYBASE|DDB_G0291310 - symbol:DDB_G0291310 "Exosome com... 564 1.3e-54 1
MGI|MGI:2385133 - symbol:Exosc2 "exosome component 2" spe... 484 3.8e-46 1
POMBASE|SPAC2F7.14c - symbol:SPAC2F7.14c "exosome subunit... 479 1.3e-45 1
UNIPROTKB|Q2KID0 - symbol:EXOSC2 "Exosome complex compone... 475 3.4e-45 1
UNIPROTKB|J9NXW2 - symbol:EXOSC2 "Uncharacterized protein... 473 5.6e-45 1
UNIPROTKB|Q13868 - symbol:EXOSC2 "Exosome complex compone... 470 1.2e-44 1
FB|FBgn0034879 - symbol:Rrp4 "Rrp4" species:7227 "Drosoph... 437 2.3e-44 2
UNIPROTKB|F1NGC4 - symbol:EXOSC2 "Uncharacterized protein... 466 3.1e-44 1
UNIPROTKB|E2QU26 - symbol:EXOSC2 "Uncharacterized protein... 460 1.3e-43 1
ZFIN|ZDB-GENE-050417-27 - symbol:exosc2 "exosome componen... 456 3.5e-43 1
UNIPROTKB|F1S0X6 - symbol:EXOSC2 "Uncharacterized protein... 454 5.7e-43 1
UNIPROTKB|Q5ZHN8 - symbol:EXOSC2 "Uncharacterized protein... 447 3.2e-42 1
UNIPROTKB|A3KFL2 - symbol:EXOSC2 "Exosome complex compone... 436 4.6e-41 1
ASPGD|ASPL0000038971 - symbol:AN10406 species:162425 "Eme... 329 3.6e-40 2
SGD|S000001111 - symbol:RRP4 "Exosome non-catalytic core ... 425 6.8e-40 1
UNIPROTKB|A3KFL1 - symbol:EXOSC2 "Exosome complex compone... 364 5.1e-39 2
WB|WBGene00022232 - symbol:exos-2 species:6239 "Caenorhab... 406 7.0e-38 1
CGD|CAL0003704 - symbol:orf19.1304 species:5476 "Candida ... 398 4.9e-37 1
UNIPROTKB|Q59TN2 - symbol:RRP4 "Likely exosome component ... 398 4.9e-37 1
RGD|1306573 - symbol:Exosc2 "exosome component 2" species... 224 1.2e-35 2
UNIPROTKB|Q95Z16 - symbol:RRP4 "Rrp4p homologue" species:... 348 8.1e-35 2
UNIPROTKB|A3KFL4 - symbol:EXOSC2 "Exosome complex compone... 220 2.1e-34 2
UNIPROTKB|F6UY88 - symbol:EXOSC2 "Uncharacterized protein... 367 9.5e-34 1
UNIPROTKB|B4DKK6 - symbol:EXOSC2 "Exosome complex compone... 310 1.0e-27 1
UNIPROTKB|A3KFL5 - symbol:EXOSC2 "Exosome complex compone... 310 1.0e-27 1
GENEDB_PFALCIPARUM|PFD0515w - symbol:PFD0515w "exosome co... 295 4.0e-26 1
UNIPROTKB|Q9U0I4 - symbol:PFD0515w "Exosome complex exonu... 295 4.0e-26 1
UNIPROTKB|J9NUF5 - symbol:EXOSC2 "Uncharacterized protein... 229 4.0e-19 1
UNIPROTKB|J9PAR2 - symbol:EXOSC2 "Uncharacterized protein... 208 9.1e-17 1
>TAIR|locus:2014535 [details] [associations]
symbol:RRP4 "AT1G03360" species:3702 "Arabidopsis
thaliana" [GO:0004527 "exonuclease activity" evidence=ISS]
[GO:0009561 "megagametogenesis" evidence=RCA] InterPro:IPR026699
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0000178
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AC005278 KO:K03679 PANTHER:PTHR21321 eggNOG:COG1097
HOGENOM:HOG000193685 OMA:VARVANC EMBL:BT010533 EMBL:AK176232
IPI:IPI00525990 PIR:C86165 RefSeq:NP_171835.1 UniGene:At.42547
ProteinModelPortal:Q9ZVT7 SMR:Q9ZVT7 IntAct:Q9ZVT7 STRING:Q9ZVT7
PaxDb:Q9ZVT7 PRIDE:Q9ZVT7 EnsemblPlants:AT1G03360.1 GeneID:839521
KEGG:ath:AT1G03360 TAIR:At1g03360 InParanoid:Q9ZVT7
PhylomeDB:Q9ZVT7 ProtClustDB:CLSN2679661 ArrayExpress:Q9ZVT7
Genevestigator:Q9ZVT7 Uniprot:Q9ZVT7
Length = 322
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 223/328 (67%), Positives = 267/328 (81%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
MR LQL +QTQKVR E+A+ERL+SLSS +N ++ V V D+IPV ++D LKGHGTS+
Sbjct: 3 MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GEL ATVCGVVER++KL+YVR LRARYKPE GDIV+GRVIEV KRW++E+NF QD +LM
Sbjct: 63 GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMN+PDGIQRRRT+VDELNMR+IF E+D+VCAEVR+ Q DGSLQLQAR+QKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLL VDPYLVKR K HFH++E GIDLIIGCNG+IW+GEHVE RD M +D E++I+
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDD-QKDEEMIS 241
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
EQ P E RQ ICRI NAIRVLS LGF +T+EVI+ETVNLSNS N+D
Sbjct: 242 SSSTGK----EQSHI--PLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 295
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRKR 327
IHDMLGSEF+V+VAE+EAERR +KRK+
Sbjct: 296 IHDMLGSEFHVVVAENEAERRR-TKRKK 322
>DICTYBASE|DDB_G0291310 [details] [associations]
symbol:DDB_G0291310 "Exosome complex exonuclease
RRP4" species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR026699 dictyBase:DDB_G0291310
EMBL:AAFI02000177 GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 KO:K03679 PANTHER:PTHR21321 eggNOG:COG1097
RefSeq:XP_635135.1 ProteinModelPortal:Q54EV5 STRING:Q54EV5
EnsemblProtists:DDB0183814 GeneID:8628081 KEGG:ddi:DDB_G0291310
InParanoid:Q54EV5 OMA:ISREGEY ProtClustDB:CLSZ2429544
Uniprot:Q54EV5
Length = 380
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 126/281 (44%), Positives = 175/281 (62%)
Query: 36 VTVGDTIPVYEDGILKGHGT-SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIV 94
V G TI E LKGHGT +D G L A+VCG ++++++L+ V+AL++RY E GDI+
Sbjct: 89 VITGQTIS-REGEYLKGHGTFNDGSGSLVASVCGTLDKVDRLVSVKALKSRYHGEVGDII 147
Query: 95 IGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAE 154
+GR+ E+ KRWK+++N D ILMLS++NLP GIQRRRT+ DEL MRS F ENDLV AE
Sbjct: 148 VGRITEITSKRWKVDVNSRLDYILMLSAINLPGGIQRRRTSADELQMRSFFVENDLVYAE 207
Query: 155 VRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYI 214
V+ GDGS+ + RNQKYGKL+ G V P L+KR KQHF++LE G+D+I+G NGYI
Sbjct: 208 VQMVMGDGSVAIHTRNQKYGKLQNGHFTKVIPSLIKRSKQHFYNLE-CGVDVILGVNGYI 266
Query: 215 WIGEHVEARDKMVVDQGSNSEQLIAKCDKN-----SMDLDEQDGTC-TPREARQNICRIA 268
WI + +Q N +Q I K +K S+ L D +E+R I R+
Sbjct: 267 WIADS---------EQQKNQQQFIQKHEKEPTFDPSIPLIIPDEIKQVSKESRDRIARVK 317
Query: 269 NAIRVLSRLGFN-ITVEVILETVNLSNSLNLDIHDMLGSEF 308
N+I +L + GF I + I+ LS + L D+L ++
Sbjct: 318 NSISLLEK-GFLLIHQKSIMNVYKLSLKMKLQSKDLLHPQY 357
>MGI|MGI:2385133 [details] [associations]
symbol:Exosc2 "exosome component 2" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0030307 "positive regulation of cell growth"
evidence=ISO] InterPro:IPR026699 PROSITE:PS50126 MGI:MGI:2385133
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 GO:GO:0006364 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 CTD:23404
GeneTree:ENSGT00440000033656 HOVERGEN:HBG051517 KO:K03679
OMA:VMEEIVL PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685
EMBL:BC021485 EMBL:BC021807 IPI:IPI00121437 RefSeq:NP_659135.1
UniGene:Mm.150972 ProteinModelPortal:Q8VBV3 SMR:Q8VBV3
STRING:Q8VBV3 PhosphoSite:Q8VBV3 PaxDb:Q8VBV3 PRIDE:Q8VBV3
DNASU:227715 Ensembl:ENSMUST00000038474 GeneID:227715
KEGG:mmu:227715 InParanoid:Q8VBV3 NextBio:378776 Bgee:Q8VBV3
CleanEx:MM_EXOSC2 Genevestigator:Q8VBV3
GermOnline:ENSMUSG00000039356 Uniprot:Q8VBV3
Length = 293
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 103/213 (48%), Positives = 138/213 (64%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL KA + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPKARKPLSESLGRDSKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +D+
Sbjct: 183 KTHFHDLP-CGASVILGNNGFIWIYPTPEHKDE 214
>POMBASE|SPAC2F7.14c [details] [associations]
symbol:SPAC2F7.14c "exosome subunit Rrp4 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] [GO:0070478 "nuclear-transcribed
mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated
decay" evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA
catabolic process, non-stop decay" evidence=ISO] [GO:0070651
"nonfunctional rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR026699 PROSITE:PS50126 PomBase:SPAC2F7.14c
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0044732
GO:GO:0003723 GO:GO:0071035 GO:GO:0071038 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 KO:K03679 PANTHER:PTHR21321
eggNOG:COG1097 HOGENOM:HOG000193685 PIR:T38562 RefSeq:NP_592984.1
ProteinModelPortal:Q09704 STRING:Q09704 EnsemblFungi:SPAC2F7.14c.1
GeneID:2541813 KEGG:spo:SPAC2F7.14c OMA:GNKRWKV OrthoDB:EOG4G1QRD
NextBio:20802901 Uniprot:Q09704
Length = 329
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 113/282 (40%), Positives = 160/282 (56%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKG 60
M ++ + +++ L + LE KS + VT G + + ++GHGT + G
Sbjct: 24 MTEMEDEIMEDEQMGLVDGEDVLEEFD-KSIHQNLVTPGQLV-TDDPQFMRGHGTYFEDG 81
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
+ A+V G V+R+NKLI V+ LR++Y PE GD++IG++ EV PKRWK++I Q+A+LML
Sbjct: 82 GIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLML 141
Query: 121 SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
SS+NLP GIQRR+ DEL MRS F E DL+ AEV+ DGS+ + R+ KYGKL G
Sbjct: 142 SSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNGV 201
Query: 181 LLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAK 240
L V P LV R K H + L G+D+I+ NGY+W+ +H E + V E A
Sbjct: 202 FLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSVSITRLEEE---AS 257
Query: 241 CDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNIT 282
S + DE DG +R +IC A R L +IT
Sbjct: 258 ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASIT 299
>UNIPROTKB|Q2KID0 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9913
"Bos taurus" [GO:0000178 "exosome (RNase complex)" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030307 "positive regulation of cell growth"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
PROSITE:PS50126 GO:GO:0005737 GO:GO:0030307 GO:GO:0005730
eggNOG:COG0515 GO:GO:0003723 OrthoDB:EOG40P460 HOGENOM:HOG000231988
GO:GO:0000178 GO:GO:0006364 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 EMBL:BC112683 IPI:IPI00710481
RefSeq:NP_001040026.1 UniGene:Bt.30629 ProteinModelPortal:Q2KID0
SMR:Q2KID0 STRING:Q2KID0 PRIDE:Q2KID0 Ensembl:ENSBTAT00000063775
GeneID:615712 KEGG:bta:615712 CTD:23404
GeneTree:ENSGT00440000033656 HOVERGEN:HBG051517 InParanoid:Q2KID0
KO:K03679 OMA:VMEEIVL NextBio:20899754 PANTHER:PTHR21321
Uniprot:Q2KID0
Length = 293
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 106/213 (49%), Positives = 140/213 (65%)
Query: 13 KVRLEKALERL-ESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVE 71
++RL A + L ESL +S + V GDTI + G ++GHGT + +L A+V G VE
Sbjct: 4 EMRLPVARKPLSESLGRESKKH-LVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVE 61
Query: 72 RINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQR 131
R+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G R
Sbjct: 62 RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 121
Query: 132 RRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR 191
RR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR
Sbjct: 122 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 181
Query: 192 RKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
+K HFH L G +I+G NG+IW+ EH E
Sbjct: 182 QKTHFHDLP-CGASVILGNNGFIWVYPTPEHKE 213
>UNIPROTKB|J9NXW2 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
GeneTree:ENSGT00440000033656 OMA:VMEEIVL PANTHER:PTHR21321
EMBL:AAEX03006839 EMBL:AAEX03006835 EMBL:AAEX03006837
EMBL:AAEX03006838 EMBL:AAEX03006836 Ensembl:ENSCAFT00000046120
Uniprot:J9NXW2
Length = 293
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 103/212 (48%), Positives = 135/212 (63%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESVGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
K HFH L G +I+G NG+IWI EH E
Sbjct: 183 KTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 213
>UNIPROTKB|Q13868 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IDA] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=TAS] [GO:0008312 "7S RNA binding" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR026699 PROSITE:PS50126 EMBL:BC000747 GO:GO:0005829
GO:GO:0005634 GO:GO:0030307 GO:GO:0005730 EMBL:CH471090 EMBL:U07561
EMBL:AL359092 GO:GO:0000178 GO:GO:0006364 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
InterPro:IPR025721 Pfam:PF14382 CTD:23404 HOVERGEN:HBG051517
KO:K03679 OMA:VMEEIVL PANTHER:PTHR21321 EMBL:AK001916 EMBL:AK022460
IPI:IPI00015905 RefSeq:NP_055100.2 UniGene:Hs.654643
ProteinModelPortal:Q13868 SMR:Q13868 IntAct:Q13868 STRING:Q13868
PhosphoSite:Q13868 DMDM:13878748 PaxDb:Q13868 PRIDE:Q13868
DNASU:23404 Ensembl:ENST00000372358 GeneID:23404 KEGG:hsa:23404
UCSC:uc004bzu.2 GeneCards:GC09P133569 H-InvDB:HIX0008473
HGNC:HGNC:17097 HPA:HPA021790 MIM:602238 neXtProt:NX_Q13868
PharmGKB:PA134876020 eggNOG:COG1097 HOGENOM:HOG000193685
InParanoid:Q13868 OrthoDB:EOG42RD7T PhylomeDB:Q13868 ChiTaRS:EXOSC2
EvolutionaryTrace:Q13868 GenomeRNAi:23404 NextBio:45573
ArrayExpress:Q13868 Bgee:Q13868 CleanEx:HS_EXOSC2
Genevestigator:Q13868 GermOnline:ENSG00000130713 GO:GO:0008312
Uniprot:Q13868
Length = 293
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 103/212 (48%), Positives = 135/212 (63%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
K HFH L G +I+G NG+IWI EH E
Sbjct: 183 KTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 213
>FB|FBgn0034879 [details] [associations]
symbol:Rrp4 "Rrp4" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005652 "nuclear lamina" evidence=IDA] [GO:0010468 "regulation
of gene expression" evidence=IMP] InterPro:IPR026699 GO:GO:0005737
GO:GO:0003723 GO:GO:0010468 GO:GO:0005652 GO:GO:0000176
InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
PANTHER:PTHR21321 eggNOG:COG1097 EMBL:AY118465
ProteinModelPortal:Q8MSZ7 SMR:Q8MSZ7 STRING:Q8MSZ7 PaxDb:Q8MSZ7
PRIDE:Q8MSZ7 FlyBase:FBgn0034879 InParanoid:Q8MSZ7
OrthoDB:EOG4GB5P4 ArrayExpress:Q8MSZ7 Bgee:Q8MSZ7 Uniprot:Q8MSZ7
Length = 298
Score = 437 (158.9 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 94/204 (46%), Positives = 137/204 (67%)
Query: 16 LEKALERLE--SLSSKSNPNSCV-TVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++ AL+R++ L++++ V T G+ + + E G ++GHGT + + ++V GV+++
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVL-MPEAGFMRGHGTFVEDENIKSSVAGVIQK 65
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI VR L++RY E GD+V+ RV EV KRW+++ N D+IL+LSS+NLP G RR
Sbjct: 66 VNKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRR 125
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DE MR E DL+ AEV++ +GSL L R+ KYGKL +G L+ V P LVKRR
Sbjct: 126 RSAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRR 185
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH+L G +I+G NGYIWI
Sbjct: 186 KMHFHNLP-CGASVILGNNGYIWI 208
Score = 47 (21.6 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 216 IGEHVEARDKMVVDQGSNSEQLIAKC 241
+ EHV D+ V+ + NS +AKC
Sbjct: 227 LNEHVPRADREVIARLRNSILALAKC 252
Score = 44 (20.5 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 257 PREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
PR R+ I R+ N+I L++ I + ++ SL + H++L
Sbjct: 232 PRADREVIARLRNSILALAKCKLMI-YDTSIQYA-YEESLRYEAHELL 277
>UNIPROTKB|F1NGC4 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA]
InterPro:IPR026699 GO:GO:0005634 GO:GO:0005737 GO:GO:0030307
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 CTD:23404
GeneTree:ENSGT00440000033656 KO:K03679 OMA:VMEEIVL
PANTHER:PTHR21321 EMBL:AADN02026560 EMBL:AADN02026561
EMBL:AADN02026562 IPI:IPI00819019 RefSeq:NP_001012816.2
UniGene:Gga.12684 Ensembl:ENSGALT00000039547 GeneID:417182
KEGG:gga:417182 NextBio:20820527 ArrayExpress:F1NGC4 Uniprot:F1NGC4
Length = 294
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 97/190 (51%), Positives = 126/190 (66%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GDTI + G ++GHGT + +L A+V G VER+NKL+ V L+ RY E GDIV+
Sbjct: 28 VVPGDTITT-DTGYMRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVV 86
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV
Sbjct: 87 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEV 146
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG++ L R+ KYGKL +G L+ V P LVKR+K HFH L G +I+G NG+IW
Sbjct: 147 QSVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLP-CGASVILGNNGFIW 205
Query: 216 IGEHVEARDK 225
I E +D+
Sbjct: 206 IYPTPEQKDE 215
>UNIPROTKB|E2QU26 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 PANTHER:PTHR21321
Ensembl:ENSCAFT00000031727 Uniprot:E2QU26
Length = 296
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 103/215 (47%), Positives = 135/215 (62%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESVGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVC---AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLV 189
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LV
Sbjct: 123 RSAEDELAMRGFLQEGDLISSGQAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLV 182
Query: 190 KRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
KR+K HFH L G +I+G NG+IWI EH E
Sbjct: 183 KRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 216
>ZFIN|ZDB-GENE-050417-27 [details] [associations]
symbol:exosc2 "exosome component 2" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR026699
ZFIN:ZDB-GENE-050417-27 GO:GO:0003723 GO:GO:0000178
InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
CTD:23404 GeneTree:ENSGT00440000033656 KO:K03679 PANTHER:PTHR21321
EMBL:CU929062 IPI:IPI01024389 RefSeq:NP_001017572.2
UniGene:Dr.76338 DNASU:550234 Ensembl:ENSDART00000149195
GeneID:550234 KEGG:dre:550234 NextBio:20879497 ArrayExpress:F8W3K6
Bgee:F8W3K6 Uniprot:F8W3K6
Length = 295
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 94/194 (48%), Positives = 125/194 (64%)
Query: 23 LESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
L++ S V GD I + G ++GHGT + L A+V G VER+NKLI V+ L
Sbjct: 16 LKTGQSSREDKHLVVPGDVI-TSDTGFMRGHGTYMDEDRLTASVAGQVERVNKLICVKPL 74
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ RY E GD+V+GR+ EV KRWK+E N D++L+LS++NLP G RRR+ DEL MR
Sbjct: 75 KTRYNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSAVNLPGGELRRRSTQDELAMR 134
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
E DL+ AEV+S DG+L L R+ KYGKL +G L+ V P LVKR+K HFH+L
Sbjct: 135 DYLQEGDLISAEVQSIFSDGALSLHTRSLKYGKLGQGVLVYVSPSLVKRQKTHFHNLP-C 193
Query: 203 GIDLIIGCNGYIWI 216
G LI+G NGY+W+
Sbjct: 194 GASLILGNNGYVWL 207
>UNIPROTKB|F1S0X6 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030307 "positive regulation of cell growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR026699 GO:GO:0005634 GO:GO:0005737 GO:GO:0030307
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 GeneTree:ENSGT00440000033656
OMA:VMEEIVL PANTHER:PTHR21321 EMBL:CU914779
Ensembl:ENSSSCT00000006273 Uniprot:F1S0X6
Length = 299
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 103/218 (47%), Positives = 135/218 (61%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILK------GHGTSDQKGELAATV 66
++RL A + L + V GDTI + G ++ GHGT + +L A+V
Sbjct: 4 EMRLPVARKPLSESLGRETKKHLVVPGDTITT-DTGFMRSSCCHRGHGTYMGEEKLIASV 62
Query: 67 CGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLP 126
G VER+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP
Sbjct: 63 AGSVERVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLP 122
Query: 127 DGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDP 186
G RRR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P
Sbjct: 123 GGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSP 182
Query: 187 YLVKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
LVKR+K HFH L G +I+G NG+IWI EH E
Sbjct: 183 SLVKRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 219
>UNIPROTKB|Q5ZHN8 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA]
InterPro:IPR026699 GO:GO:0005634 GO:GO:0005737 GO:GO:0030307
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 CTD:23404
GeneTree:ENSGT00440000033656 HOVERGEN:HBG051517 KO:K03679
PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685
OrthoDB:EOG42RD7T EMBL:AADN02026560 EMBL:AADN02026561
EMBL:AADN02026562 RefSeq:NP_001012816.2 UniGene:Gga.12684
GeneID:417182 KEGG:gga:417182 NextBio:20820527 EMBL:AJ721096
IPI:IPI00603411 SMR:Q5ZHN8 STRING:Q5ZHN8 Ensembl:ENSGALT00000006184
InParanoid:Q5ZHN8 Uniprot:Q5ZHN8
Length = 254
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 91/176 (51%), Positives = 119/176 (67%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT + +L A+V G VER+NKL+ V L+ RY E GDIV+GR+ EV KRWK+E
Sbjct: 1 MRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVVGRITEVQQKRWKVE 60
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV+S DG++ L R
Sbjct: 61 TNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEVQSVFSDGAVSLHTR 120
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
+ KYGKL +G L+ V P LVKR+K HFH L G +I+G NG+IWI E +D+
Sbjct: 121 SLKYGKLGQGVLVQVSPSLVKRQKTHFHDLP-CGASVILGNNGFIWIYPTPEQKDE 175
>UNIPROTKB|A3KFL2 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
GO:GO:0003723 EMBL:AL359092 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097
HOGENOM:HOG000193685 ChiTaRS:EXOSC2 IPI:IPI00646511 SMR:A3KFL2
Ensembl:ENST00000372352 Uniprot:A3KFL2
Length = 285
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 100/212 (47%), Positives = 130/212 (61%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGK V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQ 174
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
K HFH L G +I+G NG+IWI EH E
Sbjct: 175 KTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 205
>ASPGD|ASPL0000038971 [details] [associations]
symbol:AN10406 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR026699 EMBL:BN001306 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
OMA:GNKRWKV EnsemblFungi:CADANIAT00009613 Uniprot:C8VHJ5
Length = 390
Score = 329 (120.9 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 66/136 (48%), Positives = 92/136 (67%)
Query: 51 KGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
+GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK+
Sbjct: 82 RGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKV 141
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
++ A L LS++NLP GI RRRT+ DEL +R+ F+E DL+ AEV++ DG+ L
Sbjct: 142 DVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLLVAEVQTVHSDGAASLHT 201
Query: 169 RNQKYGKLERGQLLTV 184
R+ KYGKL G L V
Sbjct: 202 RSLKYGKLRNGVFLAV 217
Score = 115 (45.5 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 36/122 (29%), Positives = 60/122 (49%)
Query: 188 LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVE--ARDKMVVDQGS--NSEQLIAK 240
+V+ R+Q F G +DL++G NGYIWI +HVE A + S E++++
Sbjct: 242 VVRSRRQMFTITTSNGGGDVDLVLGVNGYIWISKHVEGTAAASSATEHVSITRMEEMVS- 300
Query: 241 CDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
NS+ Q+ +P R+ I R+ IRVL + G + E + + S ++L+
Sbjct: 301 ---NSV-YSSQNDEISPA-TRREIARLTQCIRVLVQGGLRVDEETVTAAYDASLQVDLEQ 355
Query: 301 HD 302
D
Sbjct: 356 GD 357
>SGD|S000001111 [details] [associations]
symbol:RRP4 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=IGI] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IDA] [GO:0070651 "nonfunctional
rRNA decay" evidence=IC] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IC] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0034427 "nuclear-transcribed mRNA catabolic
process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR026699 PROSITE:PS50126 SGD:S000001111 GO:GO:0005730
EMBL:BK006934 GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 EMBL:U00061 InterPro:IPR025721
Pfam:PF14382 GeneTree:ENSGT00440000033656 KO:K03679
PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685 GO:GO:0034475
GO:GO:0071049 OMA:GNKRWKV OrthoDB:EOG4G1QRD PIR:S46714
RefSeq:NP_011936.1 ProteinModelPortal:P38792 SMR:P38792
DIP:DIP-5888N IntAct:P38792 MINT:MINT-649511 STRING:P38792
PaxDb:P38792 EnsemblFungi:YHR069C GeneID:856466 KEGG:sce:YHR069C
CYGD:YHR069c NextBio:982123 Genevestigator:P38792
GermOnline:YHR069C Uniprot:P38792
Length = 359
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 111/286 (38%), Positives = 156/286 (54%)
Query: 27 SSKSNPNS-CVTVGDTIPVYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIYVRALRA 84
+SKS +S VT G+ + +D I ++GHGT ++V G V R+N+L+ V L+
Sbjct: 45 ASKSESDSQIVTPGELVT--DDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKG 102
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MRS
Sbjct: 103 RYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSF 162
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGI 204
E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L I
Sbjct: 163 LKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG-NI 221
Query: 205 DLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQL-----------IAKCDKNS---MD 247
+++G NGYIW+ + + ARD + S+ + I + ++ S +
Sbjct: 222 TVVLGVNGYIWLRKTSQMDLARDTPSANNSSSIKSTGPTGAVSLNPSITRLEEESSWQIY 281
Query: 248 LDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D + + RQ ICR AN I+ L+ IT + I+ S
Sbjct: 282 SDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQQRIVSAYEAS 326
>UNIPROTKB|A3KFL1 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
GO:GO:0003723 EMBL:AL359092 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097
HOGENOM:HOG000193685 ChiTaRS:EXOSC2 IPI:IPI00644896 SMR:A3KFL1
Ensembl:ENST00000372350 Uniprot:A3KFL1
Length = 200
Score = 364 (133.2 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 78/163 (47%), Positives = 104/163 (63%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGK 175
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGK
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGK 165
Score = 69 (29.3 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 189 VKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
+K K HFH L G +I+G NG+IWI EH E
Sbjct: 161 LKYGKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 195
>WB|WBGene00022232 [details] [associations]
symbol:exos-2 species:6239 "Caenorhabditis elegans"
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR026699
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0000178
EMBL:FO081731 InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721
Pfam:PF14382 GeneTree:ENSGT00440000033656 KO:K03679
PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685
RefSeq:NP_500978.1 ProteinModelPortal:Q95XD0 SMR:Q95XD0
STRING:Q95XD0 PaxDb:Q95XD0 EnsemblMetazoa:Y73B6BL.3 GeneID:177403
KEGG:cel:CELE_Y73B6BL.3 UCSC:Y73B6BL.3 CTD:177403
WormBase:Y73B6BL.3 InParanoid:Q95XD0 OMA:VARVANC NextBio:896664
Uniprot:Q95XD0
Length = 303
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 75/167 (44%), Positives = 112/167 (67%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT + GE+ +++ GVV+++N+L+ V+ ++ RY E GD+V+ RV+EV KRWK +
Sbjct: 46 MRGHGTYVRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVVVARVVEVQAKRWKCD 105
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
+ A L L S+ LP G RR+ DE M +L+CAEV+ Q DG+L L R
Sbjct: 106 VASRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHTR 165
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
N KYGKL++G L+ V P+L+K+ K+HFH L YG+ +IIGCNG +W+
Sbjct: 166 NNKYGKLQQGILIKVPPHLIKKSKKHFHTLP-YGMAVIIGCNGSVWV 211
>CGD|CAL0003704 [details] [associations]
symbol:orf19.1304 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005816 "spindle pole body" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] InterPro:IPR026699 CGD:CAL0003704
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 KO:K03679 PANTHER:PTHR21321
eggNOG:COG1097 EMBL:AACQ01000139 EMBL:AACQ01000138
RefSeq:XP_709945.1 RefSeq:XP_712984.1 ProteinModelPortal:Q59TN2
STRING:Q59TN2 GeneID:3645357 GeneID:3645390 KEGG:cal:CaO19.1304
KEGG:cal:CaO19.8884 Uniprot:Q59TN2
Length = 304
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 94/265 (35%), Positives = 146/265 (55%)
Query: 25 SLSSKSNPNSCVTVGDTIPVYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIYVRALR 83
S ++ + NS VT G+ I ED +KGHGT + ++V G + R+N+L+ V LR
Sbjct: 43 SATATAAANSIVTPGELIT--EDPTWMKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLR 100
Query: 84 ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRS 143
RY PETGD VIGR+ +V KRWK++I QDAILML S+NLP G+ RR++ DEL MR+
Sbjct: 101 GRYSPETGDHVIGRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRN 160
Query: 144 IFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG 203
E DL+ EV++ +G L R+ KYGKL G L + L+ + K H L
Sbjct: 161 FLKEGDLLNCEVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSPLIVKTKNHAFDLPG-N 219
Query: 204 IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQN 263
+ +++G NGYIW+ + + + +N+ + +++S ++ + R N
Sbjct: 220 VSIVLGTNGYIWLYKTPKINKSLE----NNTPGITRLEEESSWEIYSDKNEFIDVQTRNN 275
Query: 264 ICRIANAIRVLSRLGFNITVEVILE 288
I + N I+ L+ I +V++E
Sbjct: 276 IAKYYNIIKSLAEKEQKINNDVLVE 300
>UNIPROTKB|Q59TN2 [details] [associations]
symbol:RRP4 "Likely exosome component Rrp4p" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR026699 CGD:CAL0003704 GO:GO:0003723
GO:GO:0000178 InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721
Pfam:PF14382 KO:K03679 PANTHER:PTHR21321 eggNOG:COG1097
EMBL:AACQ01000139 EMBL:AACQ01000138 RefSeq:XP_709945.1
RefSeq:XP_712984.1 ProteinModelPortal:Q59TN2 STRING:Q59TN2
GeneID:3645357 GeneID:3645390 KEGG:cal:CaO19.1304
KEGG:cal:CaO19.8884 Uniprot:Q59TN2
Length = 304
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 94/265 (35%), Positives = 146/265 (55%)
Query: 25 SLSSKSNPNSCVTVGDTIPVYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIYVRALR 83
S ++ + NS VT G+ I ED +KGHGT + ++V G + R+N+L+ V LR
Sbjct: 43 SATATAAANSIVTPGELIT--EDPTWMKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLR 100
Query: 84 ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRS 143
RY PETGD VIGR+ +V KRWK++I QDAILML S+NLP G+ RR++ DEL MR+
Sbjct: 101 GRYSPETGDHVIGRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRN 160
Query: 144 IFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG 203
E DL+ EV++ +G L R+ KYGKL G L + L+ + K H L
Sbjct: 161 FLKEGDLLNCEVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSPLIVKTKNHAFDLPG-N 219
Query: 204 IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQN 263
+ +++G NGYIW+ + + + +N+ + +++S ++ + R N
Sbjct: 220 VSIVLGTNGYIWLYKTPKINKSLE----NNTPGITRLEEESSWEIYSDKNEFIDVQTRNN 275
Query: 264 ICRIANAIRVLSRLGFNITVEVILE 288
I + N I+ L+ I +V++E
Sbjct: 276 IAKYYNIIKSLAEKEQKINNDVLVE 300
>RGD|1306573 [details] [associations]
symbol:Exosc2 "exosome component 2" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0030307
"positive regulation of cell growth" evidence=ISO] [GO:0004532
"exoribonuclease activity" evidence=ISO] InterPro:IPR026699
RGD:1306573 GO:GO:0003723 GO:GO:0000178 InterPro:IPR025721
Pfam:PF14382 PANTHER:PTHR21321 EMBL:AC105586 IPI:IPI00948709
Ensembl:ENSRNOT00000068297 UCSC:RGD:1306573 ArrayExpress:D3ZGV5
Uniprot:D3ZGV5
Length = 263
Score = 224 (83.9 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 47/96 (48%), Positives = 63/96 (65%)
Query: 130 QRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLV 189
+RRR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LV
Sbjct: 90 ERRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGALVQVSPALV 149
Query: 190 KRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
KR+K HFH L G +I+G NG+IWI E +D+
Sbjct: 150 KRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKDE 184
Score = 177 (67.4 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 38/88 (43%), Positives = 55/88 (62%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL +A + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPRARKPLSESLGRDSKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIE 100
+NKLI V+AL+ RY E GDIV+GR+ E
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITE 90
>UNIPROTKB|Q95Z16 [details] [associations]
symbol:RRP4 "Rrp4p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR003029 InterPro:IPR026699 PROSITE:PS50126 GO:GO:0003723
GO:GO:0000178 InterPro:IPR022967 SMART:SM00316 PANTHER:PTHR21321
EMBL:AJ308995 ProteinModelPortal:Q95Z16 IntAct:Q95Z16 STRING:Q95Z16
Uniprot:Q95Z16
Length = 301
Score = 348 (127.6 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 74/175 (42%), Positives = 111/175 (63%)
Query: 45 YEDGILKGHGTSDQKG-ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVP 103
YE G + + G E+ A++ G+VE ++++ V+ + +RY E GDIV+GRV EV
Sbjct: 36 YEGNNPNGAAAAQEGGGEIIASINGMVEVTDRVVSVKGMSSRYVAEVGDIVVGRVKEVCG 95
Query: 104 KRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGS 163
RW++++ QDA++ L+++ P GI RRR DEL MR+IF E +LV AEV+ DG
Sbjct: 96 NRWRVDVGAFQDAVMPLANVTEPGGILRRRGRSDELTMRNIFDEGELVVAEVQRVSQDGL 155
Query: 164 LQLQARN-QKYGKL-ERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
+ L R+ +KYGKL + G L+ + P LVKR K HF LE ++L++G NG IW+
Sbjct: 156 ISLHTRSGEKYGKLSDFGLLVLISPALVKRVKHHFMCLEFIHVNLVLGTNGAIWV 210
Score = 45 (20.9 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 259 EARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
+ R+ + R+AN IRV+ F + + I V S
Sbjct: 232 DIRRAVTRVANCIRVMGNARFPVFDKSIEAAVKAS 266
>UNIPROTKB|A3KFL4 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
EMBL:CH471090 GO:GO:0003723 EMBL:AL359092 GO:GO:0000178
InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097
HOGENOM:HOG000193685 ChiTaRS:EXOSC2 IPI:IPI00647528 SMR:A3KFL4
Ensembl:ENST00000372351 Uniprot:A3KFL4
Length = 263
Score = 220 (82.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 48/95 (50%), Positives = 62/95 (65%)
Query: 130 QRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLV 189
+RRR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LV
Sbjct: 90 ERRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLV 149
Query: 190 KRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
KR+K HFH L G +I+G NG+IWI EH E
Sbjct: 150 KRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 183
Score = 169 (64.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIE 100
+NKLI V+AL+ RY E GDIV+GR+ E
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITE 90
>UNIPROTKB|F6UY88 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178 InterPro:IPR025721
Pfam:PF14382 GeneTree:ENSGT00440000033656 PANTHER:PTHR21321
EMBL:AAEX03006839 Ensembl:ENSCAFT00000031727 EMBL:AAEX03006835
EMBL:AAEX03006837 EMBL:AAEX03006838 EMBL:AAEX03006836
Uniprot:F6UY88
Length = 302
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 94/221 (42%), Positives = 128/221 (57%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILK----GHGTSDQKGELAATVCG 68
++RL A + L + V GDTI + G ++ GHGT + +L A+V G
Sbjct: 4 EMRLPVARKPLSESVGRDTKKHLVVPGDTITT-DTGFMRSQNRGHGTYMGEEKLIASVAG 62
Query: 69 VVERINKLIYVRALRARYKPETGDIVIGRVIEV-VPKRWKLEINFTQDAILML-SSMNLP 126
VER+NKLI V+AL+ RY E GDIV+GR+ EV + W L+ +A++ L SSM +
Sbjct: 63 SVERVNKLICVKALKTRYNGEVGDIVVGRITEVKLVSDWFLQSKSKLNAVVSLQSSMYVQ 122
Query: 127 DGIQRRRTAVDELNMRSIFTENDLVC---AEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
G RR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+
Sbjct: 123 RGSLWRRSAEDELAMRGFLQEGDLISSGQAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQ 182
Query: 184 VDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
V P LVKR+K HFH L G +I+G NG+IWI EH E
Sbjct: 183 VSPSLVKRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 222
>UNIPROTKB|B4DKK6 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] InterPro:IPR026699 GO:GO:0003723
EMBL:AL359092 GO:GO:0004527 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097 ChiTaRS:EXOSC2
IPI:IPI00645362 EMBL:AK296605 SMR:B4DKK6 STRING:B4DKK6
Ensembl:ENST00000546165 UCSC:uc011mbz.1 Uniprot:B4DKK6
Length = 267
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 67/139 (48%), Positives = 88/139 (63%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLV 151
R+A DEL MR E DL+
Sbjct: 123 RSAEDELAMRGFLQEGDLI 141
Score = 121 (47.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 35/99 (35%), Positives = 53/99 (53%)
Query: 129 IQRRRTAVD---ELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD 185
+Q++R V+ L+ + + +L E+R + L ++ Q+ G L G L+ V
Sbjct: 91 VQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQE-GDLISGVLVQVS 149
Query: 186 PYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
P LVKR+K HFH L G +I+G NG+IWI EH E
Sbjct: 150 PSLVKRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 187
>UNIPROTKB|A3KFL5 [details] [associations]
symbol:EXOSC2 "Exosome complex component RRP4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026699
GO:GO:0003723 EMBL:AL359092 GO:GO:0000178 InterPro:IPR022967
SMART:SM00316 InterPro:IPR025721 Pfam:PF14382 HOVERGEN:HBG051517
PANTHER:PTHR21321 UniGene:Hs.654643 HGNC:HGNC:17097
HOGENOM:HOG000193685 ChiTaRS:EXOSC2 IPI:IPI00645362 SMR:A3KFL5
Ensembl:ENST00000495699 Uniprot:A3KFL5
Length = 270
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 67/139 (48%), Positives = 88/139 (63%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLV 151
R+A DEL MR E DL+
Sbjct: 123 RSAEDELAMRGFLQEGDLI 141
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 129 IQRRRTAVD---ELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ--LLT 183
+Q++R V+ L+ + + +L E+R + L ++ Q+ + GQ L+
Sbjct: 91 VQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISLGQGVLVQ 150
Query: 184 VDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
V P LVKR+K HFH L G +I+G NG+IWI EH E
Sbjct: 151 VSPSLVKRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 190
>GENEDB_PFALCIPARUM|PFD0515w [details] [associations]
symbol:PFD0515w "exosome complex exonuclease
rrp4, putative" species:5833 "Plasmodium falciparum" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR003029 InterPro:IPR026699
PROSITE:PS50126 GO:GO:0003723 GO:GO:0000178 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0006364 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 KO:K03679 PANTHER:PTHR21321
RefSeq:XP_001351417.1 ProteinModelPortal:Q9U0I4
EnsemblProtists:PFD0515w:mRNA GeneID:812382 KEGG:pfa:PFD0515w
EuPathDB:PlasmoDB:PF3D7_0410400 HOGENOM:HOG000283974 OMA:PPYLVKR
ProtClustDB:CLSZ2432944 Uniprot:Q9U0I4
Length = 338
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 75/241 (31%), Positives = 121/241 (50%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
+D LKG G ++ A + G V INKLIYV L+ +Y GD+++G++ ++ +
Sbjct: 64 KDRFLKGGGLYEEDDMFYACILGRVNYINKLIYVEPLKGKYTGSVGDLLVGKIKDISNDK 123
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W +EI A L +S N+ QR R D +NM I+ +D++ E++ DG++
Sbjct: 124 WIVEIGSYCRAYLSISQTNISIFSQRIRLYNDVINMIHIYKPDDIIACEIQRISTDGTII 183
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
L R+ YGKL G L+ V L+ +K+H + + +I+G NGYIWI ++ + K
Sbjct: 184 LHTRSSIYGKLSNGVLIIVPQTLIHNQKKHIF-VFPCNVQIILGMNGYIWISSPIK-KSK 241
Query: 226 MVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
D NS D+N ++E R+NI I N I++L + NI +
Sbjct: 242 ---DTNPNS------VDQN---IEENKFEDVDHTTRKNITIITNIIKLLVKYHININYDT 289
Query: 286 I 286
I
Sbjct: 290 I 290
>UNIPROTKB|Q9U0I4 [details] [associations]
symbol:PFD0515w "Exosome complex exonuclease rrp4,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000178 "exosome
(RNase complex)" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR003029 InterPro:IPR026699 PROSITE:PS50126
GO:GO:0003723 GO:GO:0000178 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AL844503 GO:GO:0006364 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 KO:K03679 PANTHER:PTHR21321 RefSeq:XP_001351417.1
ProteinModelPortal:Q9U0I4 EnsemblProtists:PFD0515w:mRNA
GeneID:812382 KEGG:pfa:PFD0515w EuPathDB:PlasmoDB:PF3D7_0410400
HOGENOM:HOG000283974 OMA:PPYLVKR ProtClustDB:CLSZ2432944
Uniprot:Q9U0I4
Length = 338
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 75/241 (31%), Positives = 121/241 (50%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
+D LKG G ++ A + G V INKLIYV L+ +Y GD+++G++ ++ +
Sbjct: 64 KDRFLKGGGLYEEDDMFYACILGRVNYINKLIYVEPLKGKYTGSVGDLLVGKIKDISNDK 123
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W +EI A L +S N+ QR R D +NM I+ +D++ E++ DG++
Sbjct: 124 WIVEIGSYCRAYLSISQTNISIFSQRIRLYNDVINMIHIYKPDDIIACEIQRISTDGTII 183
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
L R+ YGKL G L+ V L+ +K+H + + +I+G NGYIWI ++ + K
Sbjct: 184 LHTRSSIYGKLSNGVLIIVPQTLIHNQKKHIF-VFPCNVQIILGMNGYIWISSPIK-KSK 241
Query: 226 MVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
D NS D+N ++E R+NI I N I++L + NI +
Sbjct: 242 ---DTNPNS------VDQN---IEENKFEDVDHTTRKNITIITNIIKLLVKYHININYDT 289
Query: 286 I 286
I
Sbjct: 290 I 290
>UNIPROTKB|J9NUF5 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178
GeneTree:ENSGT00440000033656 PANTHER:PTHR21321 EMBL:AAEX03006839
EMBL:AAEX03006835 EMBL:AAEX03006837 EMBL:AAEX03006838
EMBL:AAEX03006836 Ensembl:ENSCAFT00000049035 Uniprot:J9NUF5
Length = 185
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 50/107 (46%), Positives = 67/107 (62%)
Query: 118 LMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLE 177
+++ +P G RRR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL
Sbjct: 1 MVMKRRGVPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLG 60
Query: 178 RGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
+G L+ V P LVKR+K HFH L G +I+G NG+IWI EH E
Sbjct: 61 QGVLVQVSPSLVKRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 106
>UNIPROTKB|J9PAR2 [details] [associations]
symbol:EXOSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR026699 GO:GO:0003723 GO:GO:0000178
GeneTree:ENSGT00440000033656 PANTHER:PTHR21321 EMBL:AAEX03006839
EMBL:AAEX03006835 EMBL:AAEX03006837 EMBL:AAEX03006838
EMBL:AAEX03006836 Ensembl:ENSCAFT00000046636 Uniprot:J9PAR2
Length = 183
Score = 208 (78.3 bits), Expect = 9.1e-17, P = 9.1e-17
Identities = 49/100 (49%), Positives = 62/100 (62%)
Query: 128 GIQRRRTAVDELNMRSIFTENDLVC---AEVRSSQGDGSLQLQARNQKYGKLERGQLLTV 184
G RRR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V
Sbjct: 5 GAVRRRSAEDELAMRGFLQEGDLISSGQAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQV 64
Query: 185 DPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
P LVKR+K HFH L G +I+G NG+IWI EH E
Sbjct: 65 SPSLVKRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE 103
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 327 327 0.00088 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 603 (64 KB)
Total size of DFA: 210 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.09u 0.09s 26.18t Elapsed: 00:00:01
Total cpu time: 26.09u 0.09s 26.18t Elapsed: 00:00:01
Start: Sat May 11 15:31:39 2013 End: Sat May 11 15:31:40 2013