BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020356
(327 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225436884|ref|XP_002271258.1| PREDICTED: exosome complex component rrp4-like [Vitis vinifera]
Length = 330
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/329 (72%), Positives = 283/329 (86%), Gaps = 2/329 (0%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
MR QLS NQTQK+RL++ALE+LESLSSKSN N+ V V DTIPV YEDG+LKGHGT D
Sbjct: 1 MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+Y+R LRARYKPETGDI++GRV E+ PKRW+L+INF+QDA+LM
Sbjct: 61 GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDELNMRSIF END+VCAEVR Q DGSL LQAR+QKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
Q+LT+ PYLVKRRKQH H+LEE+G+DLI+GCNG+IW+GEHVEA+ ++ DQ +EQL
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNT 240
Query: 240 KCDKNS-MDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNL 298
K ++ M L+EQ+ T T E RQNICRIANA+RVL+ LGF++TVEVI ETVNLS+SLNL
Sbjct: 241 KSSSSTFMSLEEQERTYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLNL 300
Query: 299 DIHDMLGSEFYVLVAESEAERRSLSKRKR 327
DIH+MLGSEFYVLVAE EA R+S+ +K+
Sbjct: 301 DIHEMLGSEFYVLVAEGEATRKSMFTKKK 329
>gi|296086683|emb|CBI32318.3| unnamed protein product [Vitis vinifera]
Length = 320
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/328 (71%), Positives = 276/328 (84%), Gaps = 10/328 (3%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
MR QLS NQTQK+RL++ALE+LESLSSKSN N+ V V DTIPV YEDG+LKGHGT D
Sbjct: 1 MRGFQLSLNQTQKLRLQRALEQLESLSSKSNSNASVAVADTIPVNYEDGVLKGHGTLDLD 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+Y+R LRARYKPETGDI++GRV E+ PKRW+L+INF+QDA+LM
Sbjct: 61 GEVVATLCGVVERVNKLVYIRTLRARYKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDELNMRSIF END+VCAEVR Q DGSL LQAR+QKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDIVCAEVRGFQHDGSLHLQARSQKYGKLERG 180
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
Q+LT+ PYLVKRRKQH H+LEE+G+DLI+GCNG+IW+GEHVEA+ ++ DQ +EQL
Sbjct: 181 QVLTISPYLVKRRKQHLHYLEEFGVDLILGCNGFIWVGEHVEAKGILIEDQTDKAEQLNT 240
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
K K T T E RQNICRIANA+RVL+ LGF++TVEVI ETVNLS+SLNLD
Sbjct: 241 KSSKR---------TYTSLETRQNICRIANAVRVLANLGFSVTVEVIKETVNLSSSLNLD 291
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRKR 327
IH+MLGSEFYVLVAE EA R+S+ +K+
Sbjct: 292 IHEMLGSEFYVLVAEGEATRKSMFTKKK 319
>gi|449453800|ref|XP_004144644.1| PREDICTED: exosome complex component RRP4-like [Cucumis sativus]
Length = 327
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/329 (70%), Positives = 270/329 (82%), Gaps = 6/329 (1%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
M+ LQLS N TQK+RLE+A ERL+SLSSK N ++ V V DTIP+ YEDG+LKGHGT D
Sbjct: 1 MKGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ A++CGVVER+NKLIYVRALRARYKPE GDIV+GRV EV PKRW+L+IN+ QDA+LM
Sbjct: 61 GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDELNMRSIF END++CAEVR Q DG L LQAR+QKYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 179
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEAR--DKMVVDQGSNSEQL 237
QLLTV PYL+KRRKQHFHHLE+YGIDLI+GCNG+IWIGEHV+ + D M+ DQ EQ
Sbjct: 180 QLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKVVDTMIEDQVDKPEQK 239
Query: 238 IAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLN 297
+K + + ++ TP E RQNICR ANAIRVLS LGF +TVEVI+E VNLS SLN
Sbjct: 240 GSKFEGTFGNQVQE--VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLN 297
Query: 298 LDIHDMLGSEFYVLVAESEAERRSLSKRK 326
+D+H+MLGSEF VL AE E ERRS SK++
Sbjct: 298 IDVHEMLGSEFCVLTAEKEVERRSSSKKR 326
>gi|224072941|ref|XP_002303939.1| predicted protein [Populus trichocarpa]
gi|222841371|gb|EEE78918.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/328 (67%), Positives = 276/328 (84%), Gaps = 11/328 (3%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVY-EDGILKGHGTSDQK 59
MR +++S NQTQK+RL++AL++LESL ++N N+ VTV DTIPV ED ILKGHGTS++
Sbjct: 1 MRGIEISLNQTQKIRLQRALKQLESLYLRANFNASVTVADTIPVSNEDTILKGHGTSERD 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+YVR LRARYKPE GDI++GRV+EV KRWKLEINF+QDA+LM
Sbjct: 61 GEVVATLCGVVERVNKLVYVRTLRARYKPEIGDIIVGRVVEVAQKRWKLEINFSQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDG+QRRRTA+DELNMRSIF END+VC EVR+ Q DG +QLQAR+QKYGKLE+G
Sbjct: 121 LSSMNLPDGLQRRRTALDELNMRSIFEENDVVCGEVRNFQNDGGIQLQARSQKYGKLEKG 180
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLLT+ PYLVKR+K HFHHLE+YG+DLI+GCNG+IW+GEHVEARD +V DQ +N+EQ
Sbjct: 181 QLLTIPPYLVKRQKHHFHHLEQYGVDLILGCNGFIWVGEHVEARDCIVEDQLNNTEQQFT 240
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
K + P E R++IC+IANAIRVLS LGFN+T+EVILET++LS++LNL
Sbjct: 241 KSNTTKE---------MPLETRRSICQIANAIRVLSILGFNVTLEVILETIDLSSTLNLG 291
Query: 300 IHDMLGSEFYVLVAESEAERR-SLSKRK 326
I +MLG EF+VLVAE EAERR S++KRK
Sbjct: 292 IDEMLGPEFHVLVAEREAERRTSMTKRK 319
>gi|356572158|ref|XP_003554237.1| PREDICTED: exosome complex component RRP4-like [Glycine max]
Length = 327
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/328 (68%), Positives = 273/328 (83%), Gaps = 2/328 (0%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
MR +QL +QTQKVRL+KALE+LESLS+K N ++ V + D+I V +EDG+LKGHGT+D
Sbjct: 1 MREIQLPLSQTQKVRLQKALEQLESLSTKVNSDASVIIADSIHVNHEDGVLKGHGTADLN 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+YVRALR+RYKPE GDIVIGRV+EV KRW+LEIN+ QDA+L+
Sbjct: 61 GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYNQDAVLL 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMN+PDG+QRRRTAVDELNMR IF END+VCAEVR Q DG L LQAR++KYGKL RG
Sbjct: 121 LSSMNMPDGVQRRRTAVDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRG 179
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLLTV PYLVKR+KQHFHHLEE+GIDLI+GCNG+IW+GEHVEA+D M+ DQ S S+ +
Sbjct: 180 QLLTVPPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHVEAKDDMIEDQVSQSDSQVL 239
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
+KN + L+EQ+ T E R+ I R ANA+RVLS LGFNIT+E+I ++LS S+NLD
Sbjct: 240 FPNKNCVSLEEQEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLD 299
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRKR 327
IHDMLGSEF VLVAE EAERRS K++R
Sbjct: 300 IHDMLGSEFCVLVAEKEAERRSSMKKRR 327
>gi|255567640|ref|XP_002524799.1| rrp4, putative [Ricinus communis]
gi|223535983|gb|EEF37642.1| rrp4, putative [Ricinus communis]
Length = 322
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/330 (67%), Positives = 276/330 (83%), Gaps = 11/330 (3%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDG-ILKGHGTSDQ 58
MR +QL NQTQK+RL++AL++LESL SK + ++ VTV DTIP+ EDG ILKGHGT+++
Sbjct: 1 MREIQLPLNQTQKIRLQRALQQLESLHSKVHSDASVTVADTIPISLEDGNILKGHGTAER 60
Query: 59 KGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAIL 118
GE+ AT CGVVER+N L+YVR+LR+RYKPE GDI++GRVIEV KRWKLEINF+QDA+L
Sbjct: 61 DGEVVATTCGVVERVNMLVYVRSLRSRYKPEVGDIIVGRVIEVAQKRWKLEINFSQDAVL 120
Query: 119 MLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLER 178
MLSSMNLPDGIQRRRTA+DELNMR++F END+VCAEVR+ Q DGSLQLQAR+QKYGKLE+
Sbjct: 121 MLSSMNLPDGIQRRRTALDELNMRNVFEENDVVCAEVRNFQNDGSLQLQARSQKYGKLEK 180
Query: 179 GQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLI 238
GQLLTV PYLVKR+KQHFHHL +Y +DLI+GCNG+IW+GEHV+ARD MV DQ + +E
Sbjct: 181 GQLLTVSPYLVKRQKQHFHHLVQYDVDLILGCNGFIWVGEHVDARDSMVEDQVNETEDQD 240
Query: 239 AKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNL 298
K +K ++ P E R+NICRIANA+RVLS LGF++T+EVILET +LS++LNL
Sbjct: 241 TKSNKTFEEV--------PLETRRNICRIANAVRVLSTLGFSLTLEVILETFSLSSTLNL 292
Query: 299 DIHDMLGSEFYVLVAESEAERR-SLSKRKR 327
I +M G EF+VLVAE EAERR SL+K+KR
Sbjct: 293 GIDEMPGPEFHVLVAEKEAERRSSLTKKKR 322
>gi|357478895|ref|XP_003609733.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
gi|217074186|gb|ACJ85453.1| unknown [Medicago truncatula]
gi|355510788|gb|AES91930.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
gi|388516977|gb|AFK46550.1| unknown [Medicago truncatula]
Length = 327
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/328 (68%), Positives = 269/328 (82%), Gaps = 2/328 (0%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
MR + L +QTQK+RL+KALE LESLSSK N +S VT+ D+IPV +EDG+LKGHGT+D
Sbjct: 1 MRGIHLQLSQTQKLRLQKALEHLESLSSKVNSDSSVTIADSIPVNHEDGVLKGHGTADLD 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+YVRALR+RYKPE GDIVIGRVIEV KRW+L+IN++Q+A LM
Sbjct: 61 GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LS+MN+PDG+QRRRTA+DELNMR IF E D++CAEVR Q DG L LQAR+QKYGKL G
Sbjct: 121 LSAMNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDG-LHLQARSQKYGKLSTG 179
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLLTV PYLVKR+KQHFHHLE+YGIDLIIGCNG+IW+GEHVE RD MV DQ + S+ +
Sbjct: 180 QLLTVTPYLVKRQKQHFHHLEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVL 239
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
+KNS+ L+EQ+ T E R+ ICR ANA+R LS LGF IT E+I ++LS S NLD
Sbjct: 240 TPNKNSVSLEEQEKKYTALETRKYICRAANAVRGLSTLGFIITSEIIKGVIDLSLSANLD 299
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRKR 327
IHDMLGSEF VLVAE EAERRS +K+KR
Sbjct: 300 IHDMLGSEFCVLVAEKEAERRSSNKKKR 327
>gi|15218790|ref|NP_171835.1| exosome complex component RRP4 [Arabidopsis thaliana]
gi|3850568|gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from
Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis
thaliana]
gi|34365689|gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana]
gi|51970606|dbj|BAD43995.1| hypothetical protein [Arabidopsis thaliana]
gi|332189442|gb|AEE27563.1| exosome complex component RRP4 [Arabidopsis thaliana]
Length = 322
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/327 (66%), Positives = 267/327 (81%), Gaps = 8/327 (2%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
MR LQL +QTQKVR E+A+ERL+SLSS +N ++ V V D+IPV ++D LKGHGTS+
Sbjct: 3 MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GEL ATVCGVVER++KL+YVR LRARYKPE GDIV+GRVIEV KRW++E+NF QD +LM
Sbjct: 63 GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMN+PDGIQRRRT+VDELNMR+IF E+D+VCAEVR+ Q DGSLQLQAR+QKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLL VDPYLVKR K HFH++E GIDLIIGCNG+IW+GEHVE RD M +D + E++I+
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKD-EEMIS 241
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
++ + P E RQ ICRI NAIRVLS LGF +T+EVI+ETVNLSNS N+D
Sbjct: 242 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 295
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRK 326
IHDMLGSEF+V+VAE+EAERR ++K
Sbjct: 296 IHDMLGSEFHVVVAENEAERRRTKRKK 322
>gi|297843148|ref|XP_002889455.1| ATRRP4 [Arabidopsis lyrata subsp. lyrata]
gi|297335297|gb|EFH65714.1| ATRRP4 [Arabidopsis lyrata subsp. lyrata]
Length = 322
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/327 (66%), Positives = 265/327 (81%), Gaps = 8/327 (2%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
+R LQL +QTQKVR E+A+ERL+SLSS +N ++ V V D+IPV ++D LKGHGTS+
Sbjct: 3 LRKLQLPLSQTQKVRFERAIERLQSLSSTANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GEL ATVCGVVER++KL+YVR LRARYKPE GDIV+GRVIEV KRW++E+NFTQD +LM
Sbjct: 63 GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFTQDGVLM 122
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMN+PDGIQRRRT+VDELNMR+IF E+D+VCAEVR+ Q DGSLQLQAR+QKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLL VDPYLVKR K HFH++E GIDLIIGCNG+IW+GEHVE RD M +D + E +
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDEEMI-- 240
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
+S EQ+ P E RQ ICRI N IRVLS LGF +T+EVI+ETVNLSNS N+D
Sbjct: 241 ---SSSSTGKEQNH--IPPETRQTICRIGNVIRVLSNLGFTVTLEVIIETVNLSNSKNID 295
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRK 326
I DMLGSEF+V+VAE+EAERR ++K
Sbjct: 296 IQDMLGSEFHVVVAENEAERRRTKRKK 322
>gi|222619320|gb|EEE55452.1| hypothetical protein OsJ_03610 [Oryza sativa Japonica Group]
Length = 428
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/318 (65%), Positives = 253/318 (79%), Gaps = 20/318 (6%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDG--ILKGHGTSDQ 58
MR+LQLS NQTQ+VRLE AL L++++ P + VTV +TIPV +DG I KGHGTSDQ
Sbjct: 1 MRDLQLSLNQTQRVRLEAALHELQTVA----PGAAVTVAETIPV-KDGEKIFKGHGTSDQ 55
Query: 59 KGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAIL 118
GE+ AT+CGVVER+NKL+YVR LRARYKPE GDI++GRVIE+ PKRW+LEINF+QDA+L
Sbjct: 56 DGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVL 115
Query: 119 MLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLER 178
MLSSMNLPDGIQRRRTAVDELNMR+IF END++CAEVR Q DGSL LQAR+QKYGKLER
Sbjct: 116 MLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGSLHLQARSQKYGKLER 175
Query: 179 GQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLI 238
GQLL V YLVKRRKQHFHHLE+Y +DLI+GCNG+IW+GEHV VV + +N +
Sbjct: 176 GQLLVVPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGEHV------VVGENANMME-- 227
Query: 239 AKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNL 298
N ++L + TP E R++ICR+ANA+RVLS LGF +TVE+I+ET S S N+
Sbjct: 228 -----NKLNLSAEVENFTPLETRKHICRLANAVRVLSALGFTLTVELIIETAEASVSSNI 282
Query: 299 DIHDMLGSEFYVLVAESE 316
+I++MLG+EFYV AE E
Sbjct: 283 EINNMLGAEFYVQTAERE 300
>gi|357124713|ref|XP_003564042.1| PREDICTED: exosome complex component rrp4-like [Brachypodium
distachyon]
Length = 319
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/328 (65%), Positives = 260/328 (79%), Gaps = 14/328 (4%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
MR+L L NQTQ+VRLE AL L+SL+ + + VTV D IPV ED ILKGHGTSD
Sbjct: 1 MRDLHLPLNQTQRVRLEAALHELQSLAPAAASAASVTVADNIPVNQEDNILKGHGTSDHD 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+YVR LRARYKPE GDI++GRVIE+ PKRW+LEINF+QDA+LM
Sbjct: 61 GEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDELNMRSIF END+VCAEVR Q DGSL LQAR+QKYGKL+RG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVVCAEVRGFQHDGSLHLQARSQKYGKLQRG 180
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLLTV YLVKRRKQHFHHLE+Y +DLI+GCNG++W+G+HV R+ N+E +
Sbjct: 181 QLLTVPAYLVKRRKQHFHHLEQYDVDLILGCNGFVWVGQHVLVRE--------NTE---S 229
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
K DK + DE D T TP E R++ICR+ANA+RVLS LGF +T+E+I++T S S N++
Sbjct: 230 KEDKQKLS-DEVD-TFTPIETRKHICRLANAVRVLSALGFTLTIELIIQTAEASLSSNVE 287
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRKR 327
I+DMLG+EFYV AE EA RR+ RK+
Sbjct: 288 INDMLGAEFYVQTAEREARRRADLLRKK 315
>gi|115459464|ref|NP_001053332.1| Os04g0520000 [Oryza sativa Japonica Group]
gi|21741863|emb|CAD41453.1| OSJNBa0019D11.5 [Oryza sativa Japonica Group]
gi|113564903|dbj|BAF15246.1| Os04g0520000 [Oryza sativa Japonica Group]
gi|116310818|emb|CAH67607.1| OSIGBa0145G11.6 [Oryza sativa Indica Group]
gi|215736890|dbj|BAG95819.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195230|gb|EEC77657.1| hypothetical protein OsI_16671 [Oryza sativa Indica Group]
Length = 315
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/328 (63%), Positives = 256/328 (78%), Gaps = 18/328 (5%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVY-EDGILKGHGTSDQK 59
MR+LQLS NQTQ+VRLE AL L++++ + DTIPV ED ILKGHGTSDQ
Sbjct: 1 MRDLQLSLNQTQRVRLEAALHELQTVAPAAAVTVA----DTIPVNDEDNILKGHGTSDQD 56
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+YVR LRARYKPE GDI++GRVIE+ PKRW+LEINF+QDA+LM
Sbjct: 57 GEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVLM 116
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDELNMR+IF END++CAEVR Q DGSL LQAR+QKYGKLERG
Sbjct: 117 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGSLHLQARSQKYGKLERG 176
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLL V YLVKRRKQHFHHLE+Y +DLI+GCNG+IW+GEHV VV + +N +
Sbjct: 177 QLLVVPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGEHV------VVGENANMME--- 227
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
N ++L + TP E R++ICR+ANA+RVLS LGF +TVE+I+ET S S N++
Sbjct: 228 ----NKLNLSAEVENFTPLETRKHICRLANAVRVLSALGFTLTVELIIETAEASVSSNIE 283
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRKR 327
I++MLG+EFYV AE E +RR+ RK+
Sbjct: 284 INNMLGAEFYVQTAEREVKRRADLLRKK 311
>gi|194704246|gb|ACF86207.1| unknown [Zea mays]
gi|414584980|tpg|DAA35551.1| TPA: hypothetical protein ZEAMMB73_729707 [Zea mays]
Length = 319
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/328 (63%), Positives = 254/328 (77%), Gaps = 14/328 (4%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
M++ LS NQTQ+VRLE AL+ L+S++ + + VTV DTIPV ED ILKGHGTSDQ
Sbjct: 1 MKDRHLSLNQTQRVRLEAALQELQSVAPAAVSAAAVTVADTIPVNQEDNILKGHGTSDQD 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+YVR LRARYKPE GDI++GRVIE+ PKRW+LEINF+QDA+LM
Sbjct: 61 GEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDELNMRSIF END++CAEVR Q DGSL LQAR++KYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHLQARSEKYGKLERG 180
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLL V PYLVKR+KQHFHHLE+Y +DLI+GCNG+IW GEHV +K
Sbjct: 181 QLLMVAPYLVKRKKQHFHHLEKYNVDLILGCNGFIWAGEHVVVGEK-------------P 227
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
K + TP E R++ICR+AN++RVLS LGF +TVE+I+ET+ S S N++
Sbjct: 228 KTTGGQQGFSTEAENFTPLETRKHICRLANSVRVLSALGFTLTVELIIETMEASASSNVE 287
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRKR 327
I+DMLG+EFYV AE EA+RR+ RK+
Sbjct: 288 INDMLGAEFYVQTAEREAKRRADLLRKK 315
>gi|242074666|ref|XP_002447269.1| hypothetical protein SORBIDRAFT_06g031660 [Sorghum bicolor]
gi|241938452|gb|EES11597.1| hypothetical protein SORBIDRAFT_06g031660 [Sorghum bicolor]
Length = 319
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/328 (63%), Positives = 254/328 (77%), Gaps = 14/328 (4%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
M++ LS NQTQ+VRLE AL L+SL+ + + VTV DTIPV ED ILKGHGTSDQ
Sbjct: 1 MKDRHLSLNQTQRVRLEAALHELQSLAPAAASAAAVTVADTIPVNQEDNILKGHGTSDQD 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+YVR LRARYKPE GDI++GRVIE+ PKRW+LEINF+QDA+LM
Sbjct: 61 GEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDELNMRSIF END++CAEVR Q DGSL LQAR++KYGKLERG
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHLQARSEKYGKLERG 180
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
QLL V PYLVKR+KQHFHHLE+Y +DLI+GCNG+IW+GEHV VV + +
Sbjct: 181 QLLMVPPYLVKRKKQHFHHLEQYNVDLILGCNGFIWVGEHV------VVGETT------- 227
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
K + TP E R++ICR+ANA+RVLS LGF + VE+I+ET+ S S N++
Sbjct: 228 KTTGGQQRFSTEAENFTPLETRKHICRLANAVRVLSALGFTLIVELIIETMEASVSSNVE 287
Query: 300 IHDMLGSEFYVLVAESEAERRSLSKRKR 327
I+ MLG+EFYV AE EA+RR+ RK+
Sbjct: 288 INAMLGAEFYVQTAEREAKRRADLLRKK 315
>gi|357164734|ref|XP_003580149.1| PREDICTED: exosome complex component rrp4-like [Brachypodium
distachyon]
Length = 325
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/334 (62%), Positives = 256/334 (76%), Gaps = 20/334 (5%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
MR+L NQTQ+VRLE AL L++L+ + + VTV D+IPV ED ILKGHG +D
Sbjct: 1 MRDLHFPLNQTQRVRLEAALHELQTLAPAAASAASVTVADSIPVNQEDNILKGHGAADHD 60
Query: 60 GELAATVCGVVERINKLIYVRALR------ARYKPETGDIVIGRVIEVVPKRWKLEINFT 113
GE+ AT+CGVVER+NKL+YVR LR RYKPE GDI++GRVIE+ PKRW+LEINFT
Sbjct: 61 GEVVATLCGVVERVNKLVYVRTLRRGILSLFRYKPEVGDIIVGRVIEIAPKRWRLEINFT 120
Query: 114 QDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKY 173
QDA+LMLSSMNLPDGIQRRRTAVDELNMRSIF END+VCAEVR Q DGSL LQAR+QKY
Sbjct: 121 QDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVVCAEVRGFQHDGSLHLQARSQKY 180
Query: 174 GKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSN 233
GKL+RGQLLTV YLVKRRKQHFHHLE+Y +DLI+GCNG+IW+G+HV R+ N
Sbjct: 181 GKLQRGQLLTVPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGQHVLVRE--------N 232
Query: 234 SEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
+E K D++ + DE D T T E R++ICR+ANA+RVLS LGF +T+E+I++T S
Sbjct: 233 TE---LKEDQHKLS-DEVD-TFTSIETRKHICRLANAVRVLSALGFILTIELIIQTAEAS 287
Query: 294 NSLNLDIHDMLGSEFYVLVAESEAERRSLSKRKR 327
S N++I+ MLG+EFYV AE EA RR+ RK+
Sbjct: 288 LSSNVEINAMLGAEFYVQTAEREARRRADLVRKK 321
>gi|294462385|gb|ADE76741.1| unknown [Picea sitchensis]
Length = 328
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 192/324 (59%), Positives = 238/324 (73%), Gaps = 6/324 (1%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVY-EDGILKGHGTSDQK 59
MR + + +Q+ R +A ++L +SK + CV V DTIP Y E+GILKGHGT+D
Sbjct: 1 MRGVHFHMSDSQRARFSRAQQQLLHPTSKLPSSVCVNVSDTIPGYQEEGILKGHGTADLN 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+ VR LRARYKPE GDIV+GRV EV KRW ++INF Q A+LM
Sbjct: 61 GEVVATLCGVVERVNKLVLVRTLRARYKPENGDIVVGRVFEVASKRWLVDINFNQAALLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDEL+MRS+F END++CAEVR Q DGSL LQAR+ KYGKLE G
Sbjct: 121 LSSMNLPDGIQRRRTAVDELSMRSMFEENDVICAEVRGFQHDGSLHLQARSLKYGKLENG 180
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQG---SNSEQ 236
QL+T YLVKRRKQHFHHLE+YG+D+I+G NGYIW+G H + + + QG + SEQ
Sbjct: 181 QLITTSAYLVKRRKQHFHHLEQYGVDMILGLNGYIWVGVHTDVPN--LEGQGEEENGSEQ 238
Query: 237 LIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSL 296
K+S D + T R+NICR+ANAIRVLS LGF++++E+IL+T S
Sbjct: 239 STKSIVKSSGDATDGKKDSTSLRVRENICRLANAIRVLSSLGFSLSLELILDTFETSIDW 298
Query: 297 NLDIHDMLGSEFYVLVAESEAERR 320
N+DI DML EFYV +AE EAERR
Sbjct: 299 NIDIKDMLAGEFYVRIAEREAERR 322
>gi|294460073|gb|ADE75619.1| unknown [Picea sitchensis]
Length = 328
Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 191/324 (58%), Positives = 237/324 (73%), Gaps = 6/324 (1%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVY-EDGILKGHGTSDQK 59
MR + + +Q+ R +A ++L +SK + CV V DTIP Y E+GILKGHGT+D
Sbjct: 1 MRGVHFHMSDSQRARFSRAQQQLLHPTSKLPSSVCVNVSDTIPGYQEEGILKGHGTADLN 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+ VR LR RYKPE GDIV+GRV EV KRW ++INF Q A+LM
Sbjct: 61 GEVVATLCGVVERVNKLVLVRTLRVRYKPENGDIVVGRVFEVASKRWLVDINFNQAALLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
LSSMNLPDGIQRRRTAVDEL+MRS+F END++CAEVR Q DGSL LQAR+ KYGKLE G
Sbjct: 121 LSSMNLPDGIQRRRTAVDELSMRSMFEENDVICAEVRGFQHDGSLHLQARSLKYGKLENG 180
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQG---SNSEQ 236
QL+T YLVKRRKQHFHHLE+YG+D+I+G NGYIW+G H + + + QG + SEQ
Sbjct: 181 QLITTSAYLVKRRKQHFHHLEQYGVDMILGLNGYIWVGVHTDVPN--LEGQGEEENGSEQ 238
Query: 237 LIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSL 296
K+S D + T R+NICR+ANAIRVLS LGF++++E+IL+T S
Sbjct: 239 STKSIVKSSGDATDGKKDSTSLRVRENICRLANAIRVLSSLGFSLSLELILDTFETSIDW 298
Query: 297 NLDIHDMLGSEFYVLVAESEAERR 320
N+DI DML EFYV +AE EAERR
Sbjct: 299 NIDIKDMLAGEFYVRIAEREAERR 322
>gi|297848234|ref|XP_002891998.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337840|gb|EFH68257.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 303
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 186/323 (57%), Positives = 236/323 (73%), Gaps = 29/323 (8%)
Query: 1 MRNLQLSF--NQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDG-ILKGHGTSD 57
MR LQL NQTQKVR ++A+ERL+ LSS +N + V V D+I +ED +LKGHGTS+
Sbjct: 3 MRKLQLELPLNQTQKVRFKRAMERLQFLSSTTN--NSVIVADSI--HEDAFLLKGHGTSE 58
Query: 58 QKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAI 117
GEL ATVCGVV ++KL+Y+R LRARYKPE DIV+GRVIEV W+LE+N T+D I
Sbjct: 59 VDGELMATVCGVVTHVDKLVYIRTLRARYKPEVKDIVVGRVIEVSKSCWRLELNSTKDGI 118
Query: 118 LMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLE 177
L LSSM+ + +QRR+T VDELNMR+I E+D+VCAEV DG L+L+A + KYGKLE
Sbjct: 119 LKLSSMD--NDVQRRKTYVDELNMRNIIVEDDVVCAEVGCIHRDGGLELRATSYKYGKLE 176
Query: 178 RGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL 237
+GQ L VDPYLVKR HFH++E GIDLIIG NG+IW+GEHV+A+D M++D +++
Sbjct: 177 KGQHLMVDPYLVKRSNIHFHYIESLGIDLIIGRNGFIWVGEHVQAQDHMILD-----DEM 231
Query: 238 IAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLN 297
I T E RQ+I RI NAIRVLS LGF +T+EVI+ET NLSN+ N
Sbjct: 232 IKH---------------TSLETRQSILRIGNAIRVLSNLGFTMTLEVIMETFNLSNAEN 276
Query: 298 LDIHDMLGSEFYVLVAESEAERR 320
+D++DMLGSEF+VLVAE+E ERR
Sbjct: 277 IDVYDMLGSEFHVLVAENELERR 299
>gi|297852158|ref|XP_002893960.1| hypothetical protein ARALYDRAFT_891345 [Arabidopsis lyrata subsp.
lyrata]
gi|297339802|gb|EFH70219.1| hypothetical protein ARALYDRAFT_891345 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/310 (50%), Positives = 200/310 (64%), Gaps = 49/310 (15%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQKGELAATVCGVVE 71
K + A +RL+SLSS +N + V V D+IP+ +++ KGHGTS GEL TVCGVV
Sbjct: 3 KTKGRGATDRLKSLSSTTN--NSVIVADSIPLNHKEAFFKGHGTSLINGELLTTVCGVVI 60
Query: 72 RINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQR 131
++KL+YVR LRARYKPE GDIV+GRVI+V WK+E+N +QD +L LSS+N+ D +Q
Sbjct: 61 NVDKLVYVRTLRARYKPEVGDIVVGRVIKVAQSHWKVELNSSQDGVLKLSSINMHDSVQ- 119
Query: 132 RRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ-LQARNQKYGKLERGQLLTVDPYLVK 190
AEV +Q DGSLQ L A + KYGKL++GQLL VDPYLVK
Sbjct: 120 ---------------------AEVGETQRDGSLQLLLAGSHKYGKLDKGQLLKVDPYLVK 158
Query: 191 RRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDE 250
R HFH +E GIDLI+G NG+IW+GEH + + MV+D DE
Sbjct: 159 RSNLHFHFIETLGIDLILGRNGFIWVGEHAQVQYPMVLD-------------------DE 199
Query: 251 QDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYV 310
+ RQ+I RI NAIRVLS LGF +T+EVI+ET NLSN N+DIHDMLGSEF+V
Sbjct: 200 ----IISLKTRQSILRIGNAIRVLSNLGFTVTLEVIMETFNLSNMENIDIHDMLGSEFHV 255
Query: 311 LVAESEAERR 320
LV E++AERR
Sbjct: 256 LVTENQAERR 265
>gi|168019913|ref|XP_001762488.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686221|gb|EDQ72611.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 357
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 210/350 (60%), Gaps = 47/350 (13%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILK-------- 51
M+ L+L + + R+ +A + L + + + + V VGD IPV +E G L+
Sbjct: 24 MKGLELGVDHER--RISRAQQLLLNAAGSLHSTAFVNVGDVIPVDHEAGFLRQCVGAVCD 81
Query: 52 --------------GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGR 97
GHGT +L ATVCGVVER+N+L+ VR LRARY ETGD+V+GR
Sbjct: 82 LIGNSDFAMILGCRGHGTQPVNEQLLATVCGVVERVNRLVSVRPLRARYNAETGDVVVGR 141
Query: 98 VIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRS 157
V EV RWK+++N +DA L+L+++NLP GIQRRRTA+DELNMR ++ ENDL+ AEV+S
Sbjct: 142 VTEVGGNRWKVDVNSRKDAELLLAAVNLPGGIQRRRTAIDELNMRDLYVENDLISAEVQS 201
Query: 158 SQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI- 216
DGSL L R+ KYGKL GQL+ V PYL+KR KQHFH L++ G+DLI+GCNG+IWI
Sbjct: 202 LHQDGSLHLHTRSLKYGKLGNGQLVKVAPYLIKRLKQHFHQLKDLGVDLILGCNGFIWIA 261
Query: 217 -----GEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAI 271
G+ R VV S +E + E R+ ICR+AN++
Sbjct: 262 GTSAPGQKDNKRSGSVVTSASAAE----------------GESAVQFEVRERICRLANSV 305
Query: 272 RVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRS 321
RVL LG ++ E I++T S + + DML ++FYV +AE AE+R+
Sbjct: 306 RVLGALGLLVSPESIIQTYEASLQFKVKVKDMLSADFYVKLAEKIAEQRT 355
>gi|255637128|gb|ACU18895.1| unknown [Glycine max]
Length = 199
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 133/197 (67%), Positives = 158/197 (80%), Gaps = 1/197 (0%)
Query: 131 RRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVK 190
RRRTAVDELNMR IF END+VCAEVR Q DG L LQAR++KYGKL RGQLLTV PYLVK
Sbjct: 4 RRRTAVDELNMRCIFEENDVVCAEVRGFQHDG-LHLQARSRKYGKLNRGQLLTVPPYLVK 62
Query: 191 RRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDE 250
R+KQHFHHLEE+GIDLI+GCN +IW+GEHVEA+D M+ DQ S S+ + +KN + L+E
Sbjct: 63 RQKQHFHHLEEFGIDLILGCNRFIWVGEHVEAKDDMIEDQVSQSDSQVLFPNKNCVSLEE 122
Query: 251 QDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYV 310
Q+ T E R+ I R ANA+RVLS LGFNIT+E+I ++LS S+NLDIHDMLGSEF V
Sbjct: 123 QEKNYTILETRKYISRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNLDIHDMLGSEFCV 182
Query: 311 LVAESEAERRSLSKRKR 327
LVAE EAERRS K++R
Sbjct: 183 LVAEKEAERRSSMKKRR 199
>gi|219363297|ref|NP_001136723.1| hypothetical protein [Zea mays]
gi|194696768|gb|ACF82468.1| unknown [Zea mays]
gi|414584979|tpg|DAA35550.1| TPA: hypothetical protein ZEAMMB73_729707 [Zea mays]
Length = 209
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/178 (71%), Positives = 152/178 (85%), Gaps = 1/178 (0%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
M++ LS NQTQ+VRLE AL+ L+S++ + + VTV DTIPV ED ILKGHGTSDQ
Sbjct: 1 MKDRHLSLNQTQRVRLEAALQELQSVAPAAVSAAAVTVADTIPVNQEDNILKGHGTSDQD 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ AT+CGVVER+NKL+YVR LRARYKPE GDI++GRVIE+ PKRW+LEINF+QDA+LM
Sbjct: 61 GEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLE 177
LSSMNLPDGIQRRRTAVDELNMRSIF END++CAEVR Q DGSL LQAR++KYGK+
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGSLHLQARSEKYGKVH 178
>gi|302765186|ref|XP_002966014.1| hypothetical protein SELMODRAFT_84338 [Selaginella moellendorffii]
gi|300166828|gb|EFJ33434.1| hypothetical protein SELMODRAFT_84338 [Selaginella moellendorffii]
Length = 271
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 127/278 (45%), Positives = 177/278 (63%), Gaps = 23/278 (8%)
Query: 34 SCVTVGDTIPV-YEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
+ V +GD I V ++DGIL+GHGT GEL ATVCG VER+NKL++V+ LR+RY+ GD
Sbjct: 3 ALVAIGDVIQVDHQDGILRGHGTQLVDGELVATVCGTVERVNKLVFVKPLRSRYEARVGD 62
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
+VIGRV E+ KRWK+++N QDA LMLS++NLP GIQRRRTA DELNMRS+F E DL+
Sbjct: 63 VVIGRVTELAQKRWKVDVNSKQDAHLMLSAVNLPGGIQRRRTATDELNMRSVFVEGDLIS 122
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
AEV+S+ D S+ L R+ KYGKL+ GQL+ V+PYL+KR QHFH +Y +++I GCNG
Sbjct: 123 AEVQSASQD-SIHLHTRSLKYGKLQMGQLVKVEPYLIKRLSQHFHSFGQYQVEVIFGCNG 181
Query: 213 YIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTC--TPREARQNICRIANA 270
Y+WI +A+ ++ ++DG P R+ ICR+ NA
Sbjct: 182 YVWISS-------------------VAQREQQQQQQQQEDGPAIPIPLATRERICRVGNA 222
Query: 271 IRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEF 308
+R L+ G ++ + ++ S ++ DML F
Sbjct: 223 VRALASQGLVVSPDSVVAAYEASVGWGIEPKDMLARAF 260
>gi|302776644|ref|XP_002971475.1| hypothetical protein SELMODRAFT_147871 [Selaginella moellendorffii]
gi|300160607|gb|EFJ27224.1| hypothetical protein SELMODRAFT_147871 [Selaginella moellendorffii]
Length = 270
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 127/278 (45%), Positives = 173/278 (62%), Gaps = 24/278 (8%)
Query: 34 SCVTVGDTIPV-YEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
+ V +GD I V ++DGIL+GHGT GEL ATVCG VER+NKL++V+ LR+RY+ GD
Sbjct: 3 ALVAIGDVIQVDHQDGILRGHGTQLVDGELVATVCGTVERVNKLVFVKPLRSRYEARVGD 62
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
+VIGRV E+ KRWK+++N QDA LMLS++NLP GIQRRRTA DELNMRS+F E DL+
Sbjct: 63 VVIGRVTELAQKRWKVDVNSKQDAHLMLSAVNLPGGIQRRRTATDELNMRSVFVEGDLIS 122
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
AEV+S+ D S+ L R+ KYGKL+ GQL+ V+PYL+KR QHFH +Y +++I GCNG
Sbjct: 123 AEVQSASQD-SIHLHTRSLKYGKLQMGQLVKVEPYLIKRLSQHFHSFGQYQVEVIFGCNG 181
Query: 213 YIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTC--TPREARQNICRIANA 270
Y+WI + E+DG P R+ ICR+ NA
Sbjct: 182 YVWISS--------------------VAQREQQQQQLEEDGAAIPIPLATRERICRVGNA 221
Query: 271 IRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEF 308
+R L+ G ++ + ++ S ++ DML F
Sbjct: 222 VRALASQGLVVSPDSVVAAYEASVGWGIEPKDMLARAF 259
>gi|384251998|gb|EIE25475.1| hypothetical protein COCSUDRAFT_22697 [Coccomyxa subellipsoidea
C-169]
Length = 310
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 174/286 (60%), Gaps = 16/286 (5%)
Query: 36 VTVGDTIPV-YEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIV 94
V VGDTI ++G L+GHGT +L ATVCG+VER+NKL+ VR L+ RY GDIV
Sbjct: 35 VCVGDTIDTDMQEGFLRGHGTQVVDSKLVATVCGLVERVNKLVSVRPLQQRYSAALGDIV 94
Query: 95 IGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAE 154
IGRV EV KRWK+++N QD L LSS++LP G QRRRTA DE+NMRSIF E DL+ AE
Sbjct: 95 IGRVAEVAGKRWKIDLNARQDVALQLSSVDLPGGAQRRRTAEDEINMRSIFQEGDLISAE 154
Query: 155 VRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYI 214
V+S DGS+ L R+ KYGKL GQ++TV P L+KR+KQHF+ L G+++I+GCNG I
Sbjct: 155 VQSLHADGSIALHTRSTKYGKLSGGQVVTVSPNLIKRQKQHFNVLASLGVEIILGCNGMI 214
Query: 215 WIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVL 274
W+ E + + SEQ P + R+ +C++ANA+R+L
Sbjct: 215 WVAPQAEGSEN---GHAAGSEQ------------QSIPNRTVPPQQRKAVCQVANAVRLL 259
Query: 275 SRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERR 320
+ L I IL +S+ + +D ML +F + EA RR
Sbjct: 260 ALLNMLIFPSSILNVCKVSSDVGVDADRMLHPDFIPTFLQDEANRR 305
>gi|449533228|ref|XP_004173578.1| PREDICTED: exosome complex component rrp4-like, partial [Cucumis
sativus]
Length = 153
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/153 (74%), Positives = 134/153 (87%), Gaps = 1/153 (0%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
M+ LQLS N +QK+RLE+A ERL+SLSSK N ++ V V DTIP+ YEDG+LKGHGT D
Sbjct: 1 MKGLQLSLNHSQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ A++CGVVER+NKLIYVRALRARYKPE GDIV+GRV EV PKRW+L+IN+ QDA+LM
Sbjct: 61 GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYCQDAVLM 120
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
LSSMNLPDGIQRRRTAVDELNMRSIF END++C
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC 153
>gi|281206417|gb|EFA80604.1| Exosome complex exonuclease [Polysphondylium pallidum PN500]
Length = 392
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 186/307 (60%), Gaps = 19/307 (6%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKG 60
MR + ++ N++ + EK SLS + + +T G TI E L+GHGT
Sbjct: 43 MRLMHINSNESSNNKGEK------SLSQRQFDRNLMTPGQTIS-REGEFLRGHGTFHSNN 95
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
L A+VCG+VER++KL+ VR +ARY E GDIV+GR+ +V KRWK+++ QD ILML
Sbjct: 96 ALLASVCGLVERVDKLVSVRPFKARYHGEIGDIVVGRITQVGSKRWKVDVAARQDYILML 155
Query: 121 SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
+++NLP GIQRRRT+ DEL MR+ F ENDLV AEV++ DGS+ L RNQ+YGKL+ G
Sbjct: 156 TAINLPGGIQRRRTSSDELQMRNFFVENDLVYAEVQAINQDGSVALHTRNQRYGKLQNGT 215
Query: 181 LLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAK 240
++V P L+KR K H+H LE G+D+I+G NGYIW+ + + R + LI +
Sbjct: 216 FMSVPPSLIKRGKIHYHSLESIGVDIILGVNGYIWLADSAQQRQQ---------ASLIQQ 266
Query: 241 CDKNSMD---LDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLN 297
+K + D L Q RE+R I R+ N+I VL+R I I+E L+ ++
Sbjct: 267 HEKENYDQPLLIPQAIREVSRESRIKIARVKNSIEVLNRSFMLIHPRAIMEIYQLAEKMS 326
Query: 298 LDIHDML 304
L + DML
Sbjct: 327 LPLKDML 333
>gi|159488815|ref|XP_001702398.1| hypothetical protein CHLREDRAFT_108094 [Chlamydomonas reinhardtii]
gi|158271192|gb|EDO97018.1| predicted protein [Chlamydomonas reinhardtii]
Length = 306
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 181/303 (59%), Gaps = 3/303 (0%)
Query: 20 LERLESLSSKSNPNSCVTVGDTIPVY-EDGILKGHGTSDQKGELAATVCGVVERINKLIY 78
+ER+ ++ + + V VGD I ++G L+GHGT G+L ATVCGVVER+NKLIY
Sbjct: 1 IERVLNVHDAPSNTTFVCVGDEISTEGQEGFLRGHGTQVVDGKLVATVCGVVERVNKLIY 60
Query: 79 VRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE 138
V+ L +RY E GD+V+GRV ++ K W++++ Q+A L+LS+++LP GIQRRR A DE
Sbjct: 61 VKTLNSRYNAEQGDVVVGRVADLAGKAWRVDLKSRQEAKLLLSAVHLPGGIQRRRNAEDE 120
Query: 139 LNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHH 198
LNMRS F E +L+ AEV+S DGS+ L R+ KYGKL GQLL V P L+KR+KQHFH
Sbjct: 121 LNMRSFFREGELISAEVQSVHADGSVALHTRSAKYGKLVCGQLLEVPPNLIKRQKQHFHT 180
Query: 199 LEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR 258
LE G++LIIGCNG +W+ D++ + + R
Sbjct: 181 LEALGVELIIGCNGLVWVAPL--RPDRLAAANAAAGGGAGSAGADEDEAAAAAPPPPPSR 238
Query: 259 EARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAE 318
+ +CR+ANAIRVL+RL + I+ T + + + DM+ F V EA+
Sbjct: 239 MQLEVVCRMANAIRVLTRLYMPVYPASIMATYEAAVEGEVALADMMEPGFLEAVVGQEAQ 298
Query: 319 RRS 321
RRS
Sbjct: 299 RRS 301
>gi|302833054|ref|XP_002948091.1| hypothetical protein VOLCADRAFT_73556 [Volvox carteri f.
nagariensis]
gi|300266893|gb|EFJ51079.1| hypothetical protein VOLCADRAFT_73556 [Volvox carteri f.
nagariensis]
Length = 321
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 178/290 (61%), Gaps = 8/290 (2%)
Query: 33 NSCVTVGDTIPVY-EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
+ V +GD I ++G L+GHGT +L ATVCGVVER+NKLIYVR L +RY E G
Sbjct: 34 TTFVCIGDEISTEGQEGFLRGHGTQVVDEKLVATVCGVVERVNKLIYVRTLNSRYNAEQG 93
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D+V+GRV ++ K W++++ Q++ L+LS+++LP GIQRRR A DELNMRS F E +L+
Sbjct: 94 DVVVGRVADIAGKAWRVDLKSRQESKLLLSAVHLPGGIQRRRNAEDELNMRSFFREGELI 153
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCN 211
AEV+S DGS+ L R+ KYGKL GQL+ V P L+KR+KQHFH LE G++LIIGCN
Sbjct: 154 SAEVQSVHADGSVALHTRSAKYGKLTHGQLVEVPPNLIKRQKQHFHTLEALGVELIIGCN 213
Query: 212 GYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAI 271
G +W+ + D+ + + D + + + +CR+ANAI
Sbjct: 214 GLVWVA-------PLRPDRAAAAAAADIGADAADAAAEAPVAPPPSKGQLEVVCRMANAI 266
Query: 272 RVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRS 321
RVL+RL + I+ + N+++ DML +F V + EA+RR+
Sbjct: 267 RVLTRLYMPVYPASIMAVYEAAMDKNVELRDMLEPDFLEAVVKQEAQRRN 316
>gi|412989089|emb|CCO15680.1| exosome complex exonuclease RRP4 [Bathycoccus prasinos]
Length = 319
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 191/320 (59%), Gaps = 27/320 (8%)
Query: 12 QKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGI------LKGHGTSDQKGELAAT 65
Q++R E+ + L+SL++ S P+S V + T DG+ LKGHGT +GEL AT
Sbjct: 8 QQMR-ERKMSALQSLTTSSAPSSRVMLYTTPGEVVDGVNASEGFLKGHGTQVSEGELRAT 66
Query: 66 VCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNL 125
V GVVER+NKL+ V+ ++A+Y PETGD+V+GR+ + KRWK++IN Q+A+L LSS+NL
Sbjct: 67 VSGVVERVNKLVSVKPMKAKYTPETGDVVVGRINMISSKRWKVDINSRQEAVLQLSSVNL 126
Query: 126 PDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD 185
P G QRRR DELNM +F D++ AEV+S DG+ L AR+ KYG+L RG L+ V
Sbjct: 127 PSGQQRRRNEADELNMSRLFDTADVISAEVQSLFQDGAANLHARSTKYGRLSRGVLVEVC 186
Query: 186 PYLVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCD 242
P LVKR QHFH LE I+++IGCNG+IW+G A K ++ S +
Sbjct: 187 PSLVKRLPQHFHALEVAPGVFIEVLIGCNGFIWVGSPGAATSKQATNEKSKTH------- 239
Query: 243 KNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHD 302
E++ ++ R+NI R+AN +RVL + F +T + I+ S +D
Sbjct: 240 -------EEELVVVDKKERENIVRVANCVRVLDEIFFYVTPQSIMSIYKQSE--GIDAKS 290
Query: 303 MLGSE-FYVLVAESEAERRS 321
+L S+ F V E E + R+
Sbjct: 291 ILTSDGFLARVIEREIDART 310
>gi|357453831|ref|XP_003597196.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
gi|355486244|gb|AES67447.1| Exosome complex exonuclease RRP4 [Medicago truncatula]
Length = 387
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/194 (61%), Positives = 141/194 (72%), Gaps = 16/194 (8%)
Query: 132 RRTAVDELNMRSIFTENDLVCAEV-RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVK 190
RRTA+DELNMR IF E D++CAEV R Q DG L LQAR+QKYGKL GQLLTV PYLVK
Sbjct: 207 RRTALDELNMRCIFEEEDVICAEVVRDFQHDG-LYLQARSQKYGKLSSGQLLTVAPYLVK 265
Query: 191 RRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDE 250
R+ QHFHHLE YGIDLI+GCNG+IW+GEHVEARD M+ DQ + S+ + +KN
Sbjct: 266 RQNQHFHHLEHYGIDLILGCNGFIWVGEHVEARDDMIEDQINQSDPQVLIPNKNY----- 320
Query: 251 QDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYV 310
+ ICR A+A+R LS LGF +T+E+I ++LS S NLDIHDMLGSEF V
Sbjct: 321 ---------TSEYICRAADAVRALSTLGFILTLEIIKGVIDLSLSTNLDIHDMLGSEFCV 371
Query: 311 LVAESEAERRSLSK 324
LVAE EAERRS +K
Sbjct: 372 LVAEKEAERRSSNK 385
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 79/140 (56%), Gaps = 35/140 (25%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKG 60
MR QL F+Q QK+RL+KAL++LESLSS S+ +L TS
Sbjct: 1 MRGNQLQFSQFQKLRLQKALDKLESLSSDSS-----------------VLWSVLTS---- 39
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
++VR+L +RYKP+ GDIVIGRVIEV RW+L+IN Q+A +ML
Sbjct: 40 --------------TYVFVRSLLSRYKPKAGDIVIGRVIEVGQNRWRLDINCGQNAYMML 85
Query: 121 SSMNLPDGIQRRRTAVDELN 140
S+MN+PDG+Q V E N
Sbjct: 86 SAMNMPDGLQPCPYFVVETN 105
>gi|330795128|ref|XP_003285627.1| hypothetical protein DICPUDRAFT_76545 [Dictyostelium purpureum]
gi|325084449|gb|EGC37877.1| hypothetical protein DICPUDRAFT_76545 [Dictyostelium purpureum]
Length = 341
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 166/262 (63%), Gaps = 13/262 (4%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
LKGHGT L A+VCG ++++++LI V+AL++RY E GDI++GR+ E+ KRWK++
Sbjct: 70 LKGHGTFHNGSNLIASVCGTLDKVDRLISVKALKSRYHGEVGDIIVGRITEISSKRWKVD 129
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
+N D ILMLS++NLP GIQRRRT+ DEL MR+ F ENDLV AEV+ GDGS+ + R
Sbjct: 130 VNSRLDYILMLSAINLPGGIQRRRTSADELQMRNFFVENDLVYAEVQMIMGDGSVAIHTR 189
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVD 229
NQKYGKL+ G + V P L+KR KQHF+ L E G+D+I+G NGYIWI + +
Sbjct: 190 NQKYGKLQNGHFMKVTPSLIKRSKQHFYSL-ECGVDVILGLNGYIWIAD---------TE 239
Query: 230 QGSNSEQLIAKCDKNSMD---LDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVI 286
Q N I K +K + D + D +++R I R+ N+I +L + I + I
Sbjct: 240 QQKNQSAFIQKHEKENFDQACIIPDDIKQISKDSRDRISRVKNSIALLEKGFLLIHSKSI 299
Query: 287 LETVNLSNSLNLDIHDMLGSEF 308
++ +LSN + L D+L ++
Sbjct: 300 MQVYHLSNKMKLGAKDLLHPQY 321
>gi|328875590|gb|EGG23954.1| Exosome complex exonuclease RRP4 [Dictyostelium fasciculatum]
Length = 379
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/277 (46%), Positives = 174/277 (62%), Gaps = 22/277 (7%)
Query: 34 SCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
+ VT G TI E LKGHGT +G L A+V GVV++++KL+ VRA +RY+ E GDI
Sbjct: 74 NLVTPGTTIS-KEGEYLKGHGTFHHQGSLIASVSGVVDKVDKLVSVRAFHSRYQGEIGDI 132
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
++GR+ +V KRWK++ N QD ILML+++NLP GIQRRRT+ DEL MR+ F ENDL+ A
Sbjct: 133 IVGRITQVAAKRWKVDCNARQDYILMLTAINLPGGIQRRRTSSDELQMRNFFVENDLIYA 192
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
EV++ GDGS+ L RNQ+YGKL G L++V P L+KR KQH H L + G+D+I+G NGY
Sbjct: 193 EVQAINGDGSVALHTRNQRYGKLMNGVLVSVPPALIKRSKQHAHTL-DCGVDIILGVNGY 251
Query: 214 IWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTP------REARQNICRI 267
IWI + + QLI + +K+S D Q P RE+RQ I R+
Sbjct: 252 IWIADSAQQ---------QAQTQLIQRHEKDSYD---QPLFVPPQVKQVSRESRQKIARV 299
Query: 268 ANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
NAI +L I I+E N+ +LN+ + DML
Sbjct: 300 RNAIHILHTHYMLIHTRSIMEIYNM--TLNMPLTDML 334
>gi|449527509|ref|XP_004170753.1| PREDICTED: uncharacterized protein LOC101227941, partial [Cucumis
sativus]
Length = 176
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/176 (65%), Positives = 136/176 (77%), Gaps = 5/176 (2%)
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
AEVR Q DG L LQAR+QKYGKLERGQLLTV PYL+KRRKQHFHHLE+YGIDLI+GCNG
Sbjct: 3 AEVRGLQHDG-LHLQARSQKYGKLERGQLLTVSPYLIKRRKQHFHHLEQYGIDLILGCNG 61
Query: 213 YIWIGEHVEAR--DKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANA 270
+IWIGEHV+ + D M+ DQ EQ +K + + ++ TP E RQNICR ANA
Sbjct: 62 FIWIGEHVDPKVVDTMIEDQVDKPEQKGSKFEGTFGNQVQE--VYTPLETRQNICRTANA 119
Query: 271 IRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRSLSKRK 326
IRVLS LGF +TVEVI+E VNLS SLN+D+H+MLGSEF VL AE E ERRS SK++
Sbjct: 120 IRVLSTLGFIMTVEVIMEIVNLSISLNIDVHEMLGSEFCVLTAEKEVERRSSSKKR 175
>gi|389740932|gb|EIM82122.1| hypothetical protein STEHIDRAFT_65970 [Stereum hirsutum FP-91666
SS1]
Length = 286
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/280 (42%), Positives = 169/280 (60%), Gaps = 14/280 (5%)
Query: 26 LSSKSNPNSCVTVGDTIPVYED-GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA 84
L S P S P+ ++GHGT ++ A+V G VER+NKL+ VRALR
Sbjct: 5 LEDDSAPLSSKVTAPGEPITSSQAFMRGHGTYVDDDDVIASVAGTVERVNKLVTVRALRT 64
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY PE GD+V+GR+ EV P+RW+++ N QDAILMLSS+NLP G+QRR+ DEL MR+
Sbjct: 65 RYNPEVGDLVVGRITEVQPRRWRVDTNSRQDAILMLSSVNLPGGVQRRKLESDELQMRNF 124
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGI 204
F E DL+ AEV++ DG++ L R+ KYGKL GQL+TV P LV+R K HF L G+
Sbjct: 125 FEEGDLLVAEVQAFFSDGAMSLHTRSLKYGKLRNGQLVTVPPILVRRLKSHFMPL-PCGV 183
Query: 205 DLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNI 264
DLI+G NGYIW+ +HV+ ++ ++G +SE + + + N D R I
Sbjct: 184 DLILGLNGYIWVSKHVKESEQE-GEEGFDSEAVYSNRNDNIDD-----------ATRTAI 231
Query: 265 CRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
R+AN I VL+ +T V+LE + +L++ D+L
Sbjct: 232 SRVANIIHVLASHSVPLTDIVLLEAYEWAVEQDLEVKDLL 271
>gi|66802526|ref|XP_635135.1| hypothetical protein DDB_G0291310 [Dictyostelium discoideum AX4]
gi|60463454|gb|EAL61639.1| hypothetical protein DDB_G0291310 [Dictyostelium discoideum AX4]
Length = 380
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 170/275 (61%), Gaps = 6/275 (2%)
Query: 35 CVTVGDTIPVYEDGILKGHGT-SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
V G TI E LKGHGT +D G L A+VCG ++++++L+ V+AL++RY E GDI
Sbjct: 88 LVITGQTIS-REGEYLKGHGTFNDGSGSLVASVCGTLDKVDRLVSVKALKSRYHGEVGDI 146
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
++GR+ E+ KRWK+++N D ILMLS++NLP GIQRRRT+ DEL MRS F ENDLV A
Sbjct: 147 IVGRITEITSKRWKVDVNSRLDYILMLSAINLPGGIQRRRTSADELQMRSFFVENDLVYA 206
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
EV+ GDGS+ + RNQKYGKL+ G V P L+KR KQHF++L E G+D+I+G NGY
Sbjct: 207 EVQMVMGDGSVAIHTRNQKYGKLQNGHFTKVIPSLIKRSKQHFYNL-ECGVDVILGVNGY 265
Query: 214 IWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRV 273
IWI + + +++ Q E D + + + +E+R I R+ N+I +
Sbjct: 266 IWIADSEQQKNQQQFIQKHEKE---PTFDPSIPLIIPDEIKQVSKESRDRIARVKNSISL 322
Query: 274 LSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEF 308
L + I + I+ LS + L D+L ++
Sbjct: 323 LEKGFLLIHQKSIMNVYKLSLKMKLQSKDLLHPQY 357
>gi|395333568|gb|EJF65945.1| exosome complex exonuclease rrp4 [Dichomitus squalens LYAD-421 SS1]
Length = 319
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/257 (43%), Positives = 166/257 (64%), Gaps = 13/257 (5%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT E+ A+V G VER+NKLI VRA+R+RY PE GD+V+GR+ EV P+RWK
Sbjct: 58 AFMRGHGTYVDNDEVIASVAGTVERVNKLITVRAVRSRYNPEVGDLVVGRITEVQPRRWK 117
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++ N QDA+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ DG++ L
Sbjct: 118 VDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQAFFSDGAMSLH 177
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R+ +YGKL GQL+TV P L++R K HF L G+DLI+G NGYIW+ +HV+ ++
Sbjct: 178 TRSLRYGKLRNGQLVTVPPILIRRLKSHFVSL-PCGVDLILGLNGYIWVSKHVKQSEQE- 235
Query: 228 VDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
++G ++E + + +KN D+DE R I R++N I++L+ +T V+L
Sbjct: 236 GEEGFDAEAVYS--NKND-DIDEA--------TRAAISRVSNIIKILAAHFVPLTDSVLL 284
Query: 288 ETVNLSNSLNLDIHDML 304
E + + D+L
Sbjct: 285 EAYEWAVEQESSVKDLL 301
>gi|145347330|ref|XP_001418126.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578354|gb|ABO96419.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 36/332 (10%)
Query: 15 RLEKALERLESLSSKSNPNSCVTVGDTIPVYE--DGILKGHGT------------SDQKG 60
R ++ALE+ + SS + + V+ G+ IP + +G L+GHGT D
Sbjct: 18 RAKRALEQCATASSSAR--AFVSPGERIPGIDSSEGFLRGHGTRPIAEDNGTDGDGDDDR 75
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
L AT GVVER+NKL+ VRAL+ARY PETGD+V+GRV E+ KRW L++N Q+ +L L
Sbjct: 76 GLVATTAGVVERVNKLVSVRALKARYAPETGDVVLGRVKEISGKRWILDVNARQNGVLQL 135
Query: 121 SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
S+++LP +QRRR VDELNMR ++ E+D+V AEV+S DG+ L R+ KYG L+ GQ
Sbjct: 136 SAVHLPGNVQRRRNDVDELNMRMLYAEDDVVSAEVQSVYADGAAALHTRSLKYGCLKNGQ 195
Query: 181 LLTVDPYLVKRRKQHFHHL-----------EEYGIDLIIGCNGYIWIGEHVEARDKMVVD 229
L+ V LV+R QHFH L E +++++GCNG+IW+G A
Sbjct: 196 LVRVTANLVRRLPQHFHRLKMDEFHDGVAAEANDVEILLGCNGFIWVGAPSGAT------ 249
Query: 230 QGSNSEQLIAKCDKNSMD-LDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
+ E I + + +D L E G R+NI R+AN++R L+ L I+ +++
Sbjct: 250 --APRESEIRREPSDVVDELRELHGDEVSPVQRENISRVANSVRALAELFLPISPPAVMD 307
Query: 289 TVNLSNSLNLDIHDMLGSEFYVLVAESEAERR 320
S+ + + DML F + E E E+R
Sbjct: 308 VFKASSECGVAVRDMLSQGFLTRILEREFEKR 339
>gi|409045039|gb|EKM54520.1| hypothetical protein PHACADRAFT_258426 [Phanerochaete carnosa
HHB-10118-sp]
Length = 288
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 160/257 (62%), Gaps = 13/257 (5%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT E+ A+V G VER+NKLI VRA R RY PE GD+V+GR+ EV P+RWK
Sbjct: 29 AFMRGHGTYVDNDEVVASVAGTVERVNKLISVRAARTRYNPEVGDLVVGRITEVQPRRWK 88
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++ QDA+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ DG++ L
Sbjct: 89 VDAGSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQAFFADGAMSLH 148
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R+ +YGKL GQL+ V P L++R K HF L G+DLI+G NGYIW+ +HV+ ++
Sbjct: 149 TRSLRYGKLRNGQLVVVPPALIRRLKSHFTSL-PCGVDLILGLNGYIWVSKHVKESEQE- 206
Query: 228 VDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
++G ++E + + C+ D+D+ R I R++N IRV + +T V+L
Sbjct: 207 GEEGFDAEAVYSNCND---DIDDA--------TRTAIARVSNIIRVFAAHFHPLTDAVLL 255
Query: 288 ETVNLSNSLNLDIHDML 304
E + + D+L
Sbjct: 256 EAYEWAVEQECSVKDLL 272
>gi|449543038|gb|EMD34015.1| hypothetical protein CERSUDRAFT_86778 [Ceriporiopsis subvermispora
B]
Length = 288
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 159/261 (60%), Gaps = 13/261 (4%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT E+ A+V G VER+NKL+ VRA+R RY PE GD+V+GR+ EV P+RWK
Sbjct: 29 AFMRGHGTYVDGEEVVASVAGTVERVNKLVTVRAIRTRYSPEVGDLVVGRITEVQPRRWK 88
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++ N QDA+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ DG++ L
Sbjct: 89 VDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQAFFSDGAMSLH 148
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R+ KYGKL GQL+TV P L+KR K HF L G+D+I+G NGYIW+ +HV+
Sbjct: 149 TRSLKYGKLRNGQLVTVPPILIKRLKSHFLAL-PCGVDVILGLNGYIWVSKHVKQ----- 202
Query: 228 VDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
Q E A+ ++ + D D T R I R+ N IR+L+ +T +L
Sbjct: 203 -SQQEGEEGFDAQAVYSNKNDDIDDAT------RAAISRVCNIIRILAAQFVPLTDVTLL 255
Query: 288 ETVNLSNSLNLDIHDMLGSEF 308
E + D+ D+L +F
Sbjct: 256 EAYDWVVEQEGDVKDLLQGDF 276
>gi|303274582|ref|XP_003056609.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462693|gb|EEH59985.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 307
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/273 (44%), Positives = 162/273 (59%), Gaps = 16/273 (5%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
G+L+GHGT AT+CG +ER+ L+ VR R YKPETGD+V+GRVIE K WK
Sbjct: 41 GLLRGHGTILVSDRFTATICGTIERVGNLVSVRPFRCTYKPETGDVVLGRVIERAGKCWK 100
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
L+IN QDA L LS++NLP GI RRR A DELNMR ++ ++DLV AEV+S DG++ L
Sbjct: 101 LDINSWQDASLHLSAINLPGGIPRRRNADDELNMRQLYDDDDLVSAEVQSVHRDGTVMLH 160
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL---EEYGIDLIIGCNGYIWIGEHVEA-- 222
R KYG + GQL++V P LVKR + HFH + + I+++IGCNGYIW+G A
Sbjct: 161 TRGPKYGCMSLGQLISVVPVLVKRAETHFHRVCSDLKTDIEILIGCNGYIWVGLKHSACF 220
Query: 223 -RDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNI 281
D + S S+ C++ E T R +CR+A+A+RVLS L I
Sbjct: 221 THDP----ECSKSQNNTGGCER------EVFSTSVNAHTRDQVCRVASAVRVLSMLHLAI 270
Query: 282 TVEVILETVNLSNSLNLDIHDMLGSEFYVLVAE 314
+ IL+ V+ SN + DML F V +E
Sbjct: 271 YPKRILDVVDRSNDWGVSNTDMLRRAFVVKFSE 303
>gi|336366748|gb|EGN95094.1| hypothetical protein SERLA73DRAFT_187395 [Serpula lacrymans var.
lacrymans S7.3]
Length = 312
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 14/241 (5%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + E+ A+V G +ER+NKL+ VRA+R+RY PE GD+V+GR+ EV P+RWK+
Sbjct: 55 FMRGHGTYVDQDEVIASVAGTIERVNKLVTVRAIRSRYNPEVGDLVVGRITEVQPRRWKV 114
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+ + QDAILMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ DG++ L
Sbjct: 115 DAHSRQDAILMLSSVNLPGGVQRRKLESDELQMRNFFEEGDLLVAEVQAFFSDGAMSLHT 174
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
R+ KYGKL GQL+ V P LV+R K HF L G+DLI+G NGYIW+ +HV+ D+
Sbjct: 175 RSLKYGKLRNGQLIIVPPILVRRLKSHFISL-PCGVDLILGLNGYIWVSKHVKDIDQG-- 231
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
+QG ++E + + +KN D+D+ R I R++N IRVL+ +T ++LE
Sbjct: 232 EQGLDAEAVYS--NKND-DIDDA--------TRMAISRVSNIIRVLADYFVPLTDMLLLE 280
Query: 289 T 289
Sbjct: 281 A 281
>gi|392566801|gb|EIW59976.1| exosome complex exonuclease rrp4 [Trametes versicolor FP-101664
SS1]
Length = 288
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 167/261 (63%), Gaps = 13/261 (4%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT E+ A+V G VER+NKLI VR++R+RY PE GD+V+GR+ EV P+RWK
Sbjct: 27 AFMRGHGTFVDSEEVIASVAGTVERVNKLITVRSVRSRYNPEVGDLVVGRITEVQPRRWK 86
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++ N QDA+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ DG++ L
Sbjct: 87 VDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQAFFADGAMSLH 146
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R+ +YGKL GQL+ V P L++R K HF L G+DLI+G NGYIW+ +HV+A ++
Sbjct: 147 TRSLRYGKLRNGQLVAVPPILIRRLKSHFVTL-PCGVDLILGLNGYIWVSKHVKASEQE- 204
Query: 228 VDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
++G ++E + + + +++D D T R I R++N IRVL+ ++ ++L
Sbjct: 205 GEEGFDAEAVYSNRN-DTID----DAT------RVAISRVSNIIRVLTAHFVPLSDTILL 253
Query: 288 ETVNLSNSLNLDIHDMLGSEF 308
E D+ D+L E
Sbjct: 254 EAYEWVVEQESDVRDVLSDEL 274
>gi|342319344|gb|EGU11293.1| Exosome complex exonuclease rrp4 [Rhodotorula glutinis ATCC 204091]
Length = 545
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 161/244 (65%), Gaps = 8/244 (3%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT Q ++ A+V G +ER+NKL+ VR LR +Y+ E GD+V+GR++EV PKRWK+E
Sbjct: 101 MRGHGTYVQDDKVLASVAGTLERVNKLVSVRPLRTKYRGEVGDLVVGRIVEVGPKRWKVE 160
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
+ +Q+A+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ GDG++ L R
Sbjct: 161 THASQNAVLMLSSINLPGGVQRRKLESDELQMRTFFQEGDLLVAEVQAFFGDGAMSLHTR 220
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVD 229
+ KYGKL+ GQL+TV P LV R K HFH L +G+DLIIG NGYIWI + ++ ++ +
Sbjct: 221 SLKYGKLKNGQLVTVPPALVVRSKSHFHTL-PFGVDLIIGLNGYIWISKTIKKETRLDGE 279
Query: 230 QGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILET 289
+ E+ + + +D +P R +I R+A I +L+ IT E++ E
Sbjct: 280 EAGFGEE----SGEGVYSGENED--ISP-SIRASITRVALLISLLATHCIPITAELVTEA 332
Query: 290 VNLS 293
+++
Sbjct: 333 HDVA 336
>gi|409081649|gb|EKM82008.1| hypothetical protein AGABI1DRAFT_112186, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426196882|gb|EKV46810.1| hypothetical protein AGABI2DRAFT_193430, partial [Agaricus bisporus
var. bisporus H97]
Length = 305
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 160/261 (61%), Gaps = 14/261 (5%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT E+ A+V G +ER+NKL+ VRA+R+RY PE GD+V+GR+ EV P+RWK
Sbjct: 57 AFMRGHGTYVNDEEVIASVTGTIERVNKLVTVRAIRSRYNPEVGDLVVGRITEVQPRRWK 116
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++ N QDA+LMLSS+NLP G+QRR+ DEL MRS F E DL+ AEV++ DG++ L
Sbjct: 117 VDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRSFFEEGDLLVAEVQAFFADGAMSLH 176
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R+ +YGKL GQL+ V P LV+R K HF L G+DLI+ NGYIWI +HV +
Sbjct: 177 TRSLRYGKLRNGQLVAVPPILVRRLKSHFISL-PCGVDLILALNGYIWISKHV--KQNYQ 233
Query: 228 VDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
+G ++E + + + DE D R I R+ N +R+L+ +T +++
Sbjct: 234 EGEGFDAEGVYSNIN------DEID-----EATRTAISRVTNIVRLLASHFIPLTDTILV 282
Query: 288 ETVNLSNSLNLDIHDMLGSEF 308
E + + + D+L EF
Sbjct: 283 EAYDWTVDQEGGVKDLLSEEF 303
>gi|302689775|ref|XP_003034567.1| hypothetical protein SCHCODRAFT_43279 [Schizophyllum commune H4-8]
gi|300108262|gb|EFI99664.1| hypothetical protein SCHCODRAFT_43279, partial [Schizophyllum
commune H4-8]
Length = 258
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 154/241 (63%), Gaps = 13/241 (5%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT ++ A+V G +ER+NKL+ VR +R RY PE GD+V+GRV EV P+RWK+
Sbjct: 30 FMRGHGTYVDGEQVIASVAGAIERVNKLVTVRPVRTRYNPEVGDLVVGRVTEVQPRRWKV 89
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+ N QDA LML+S+NLP G+QRR+ DEL MR+ F E DL+ AEV++ GDGS+ L
Sbjct: 90 DANSRQDAALMLASVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQAIMGDGSMSLHT 149
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
R+ +YGKL GQL+TV P LVKR K HF L +DLI+G NGYIW+ +HV A + V
Sbjct: 150 RSLRYGKLRNGQLVTVPPILVKRLKSHFITL-PCDVDLILGLNGYIWVSKHVLA-SQQVG 207
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
++G ++E + + + + P R +I R+++ IR L+ +T +ILE
Sbjct: 208 EEGFDAEAVYSNRNDD-----------IPAATRASISRVSSIIRTLAMHNVPLTDALILE 256
Query: 289 T 289
Sbjct: 257 A 257
>gi|392589653|gb|EIW78983.1| hypothetical protein CONPUDRAFT_59195 [Coniophora puteana
RWD-64-598 SS2]
Length = 300
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 152/240 (63%), Gaps = 16/240 (6%)
Query: 39 GDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRV 98
G+TI +D ++GHGT + E+ A+V G +ER+NKL+ VR + RY PE GD+V+GR+
Sbjct: 22 GETITSSQD-FMRGHGTYVENEEVIASVAGTIERVNKLVTVRPISTRYNPEVGDLVVGRI 80
Query: 99 IEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSS 158
EV PKRWK++ N QDA+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++
Sbjct: 81 TEVQPKRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRNFFEEGDLLVAEVQAF 140
Query: 159 QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG---IDLIIGCNGYIW 215
DG++ L R+ KYGKL GQL+++ P LV+R K HF L G +D+I+G NGY+W
Sbjct: 141 FADGAMSLHTRSLKYGKLRNGQLVSIPPLLVRRLKSHFLALHAGGGVDVDVILGLNGYVW 200
Query: 216 IGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLS 275
+ HVE ++++ D ++ + D +P R I R++N IRVL+
Sbjct: 201 VSRHVE----------KSAQEGETGFDAEAVYSNRNDDIDSP--TRTAIARVSNIIRVLA 248
>gi|390600048|gb|EIN09443.1| exosome complex exonuclease rrp4 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 285
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 151/242 (62%), Gaps = 13/242 (5%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + E+ A+V G VER+N+LI VRALR+RY PE GD+VIGR+ +V PKRWK
Sbjct: 26 AFMRGHGTYVAQDEVIASVAGPVERVNRLITVRALRSRYNPEVGDLVIGRITDVQPKRWK 85
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++ N QDA+LMLSS+NLP GIQRR+ DEL MRS F E DL+ AEV++ DG++ L
Sbjct: 86 VDANSRQDAVLMLSSVNLPGGIQRRKVESDELQMRSFFEEGDLLVAEVQAFFSDGAMSLH 145
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R+ +YGKL GQL+++ P LV+R K F L G+DLI+G NGYIW+ +H++A D+
Sbjct: 146 TRSLRYGKLRNGQLVSIPPILVRRLKSQFLTL-PCGVDLILGLNGYIWVSKHIKANDQ-- 202
Query: 228 VDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
+G A + +D+ R I R+ N I +L +T ++L
Sbjct: 203 --EGEEGFDAQAVYSNQNDHIDQ--------ATRLAISRVTNIIHILVAHFIPLTDTILL 252
Query: 288 ET 289
E
Sbjct: 253 EA 254
>gi|353235884|emb|CCA67890.1| related to RRP4-3`-5` exoribonuclease [Piriformospora indica DSM
11827]
Length = 311
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 163/252 (64%), Gaps = 14/252 (5%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
N V G TI + ++GHGT E+AATV G ++R+NKL+ V+ +R+RY PE
Sbjct: 37 NKTGIVAPGQTITSVTE-FMRGHGTFADGDEVAATVAGTLQRVNKLLSVKPIRSRYVPEI 95
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+V+ R++EV PKRWK++ N QDA+LMLSS+NLP GIQRR+ DEL MR+ F E DL
Sbjct: 96 GDLVVARIVEVQPKRWKVDANGRQDAVLMLSSVNLPGGIQRRKLESDELQMRAFFEEGDL 155
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGC 210
+ AEV++ DG++ L R+ +YGKL GQL+TV P L+KR K HF L G+D+I+G
Sbjct: 156 LVAEVQAFFMDGAMSLHTRSLRYGKLRNGQLVTVPPILIKRLKSHFCAL-TCGVDVILGV 214
Query: 211 NGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANA 270
NGY+W+ +HV+ ++ V + G N+E + + +KN D D + R I R+ N
Sbjct: 215 NGYVWVCKHVK-ENEQVGEDGFNAESVYS--NKN----DYIDTST-----RLAIIRVTNV 262
Query: 271 IRVLSRLGFNIT 282
++VL++ +IT
Sbjct: 263 VKVLAQYYVSIT 274
>gi|402216788|gb|EJT96871.1| exosome complex exonuclease rrp4 [Dacryopinax sp. DJM-731 SS1]
Length = 273
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 162/259 (62%), Gaps = 13/259 (5%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + G + A++ G +ER+NKL+ VRAL+ RY E GD+V+GR+ EV RWK+
Sbjct: 15 FMRGHGTFVEDGSVVASLSGTIERVNKLVSVRALQTRYHGEVGDLVVGRITEVQAARWKV 74
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
++N QDAIL LSS+NLP G+QRR+ DEL MR F E DL+ AEV+ GDG L L
Sbjct: 75 DVNSHQDAILRLSSVNLPGGVQRRKLESDELEMRKFFEEGDLLVAEVQPMHGDGVLSLHT 134
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
R+ KYGKL GQL++V P L++RR HF L G+DLI+G NGYIWI +HV A ++
Sbjct: 135 RSLKYGKLRNGQLISVSPVLIRRRSTHFCTL-PCGVDLILGMNGYIWIAKHV-AENEREG 192
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
++G ++E + + +KN D+D E R I R++N I + +R +T ++ +
Sbjct: 193 EEGFDAEAVYS--NKND-DID--------LETRAAISRVSNLISIFARHSVPLTDTILAK 241
Query: 289 TVNLSNSLNLDIHDMLGSE 307
+ + L D+L +E
Sbjct: 242 AYDWAVQQELSPKDLLRTE 260
>gi|124359809|gb|ABN06127.1| Nucleic acid-binding, OB-fold, putative [Medicago truncatula]
Length = 164
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 109/185 (58%), Positives = 129/185 (69%), Gaps = 24/185 (12%)
Query: 141 MRSIFTENDLVCAEV-RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL 199
MR IF E D++CAEV R Q DG L LQAR+QKYGKL GQLLTV PYLVKR+ QHFHHL
Sbjct: 1 MRCIFEEEDVICAEVVRDFQHDG-LYLQARSQKYGKLSSGQLLTVAPYLVKRQNQHFHHL 59
Query: 200 EEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPRE 259
E YGIDLI+GCNG+IW+GEHVEARD M+ DQ + S+ +
Sbjct: 60 EHYGIDLILGCNGFIWVGEHVEARDDMIEDQINQSDP----------------------Q 97
Query: 260 ARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAER 319
+ ICR A+A+R LS LGF +T+E+I ++LS S NLDIHDMLGSEF VLVAE EAER
Sbjct: 98 TSEYICRAADAVRALSTLGFILTLEIIKGVIDLSLSTNLDIHDMLGSEFCVLVAEKEAER 157
Query: 320 RSLSK 324
RS +K
Sbjct: 158 RSSNK 162
>gi|393222177|gb|EJD07661.1| hypothetical protein FOMMEDRAFT_137897 [Fomitiporia mediterranea
MF3/22]
Length = 293
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 166/274 (60%), Gaps = 18/274 (6%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT E+ A+ G VER+NKLI VR LRARY PE GD+V+GR+ EV +RWK
Sbjct: 32 FMRGHGTYVDGEEVVASTAGTVERVNKLITVRPLRARYNPEIGDLVVGRITEVAARRWKA 91
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+ N QDA+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ DGS+ L
Sbjct: 92 DANARQDAVLMLSSINLPGGVQRRKLESDELQMRNFFEEGDLLVAEVQAFFADGSMSLHT 151
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
R+ KYGKL GQL+ V P L++R K HF L G+DLI+G NGY+W+ +H ++
Sbjct: 152 RSLKYGKLRNGQLVVVPPILIRRLKSHFISL-PCGVDLILGLNGYVWVNKHTSEHERE-G 209
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
++G ++E + + ++N DE D T R I R+ N +RVL+ IT V+ +
Sbjct: 210 EEGFDAEAVYS--NRN----DEIDLTT-----RTAIARVYNILRVLAIHFVPITDAVLAD 258
Query: 289 TVNLSNSLNLD--IHDML---GSEFYVLVAESEA 317
+ +LD + D+L SE VL + A
Sbjct: 259 AYEWAIEQDLDCSVKDLLREENSEAMVLAITARA 292
>gi|170104928|ref|XP_001883677.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641312|gb|EDR05573.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 287
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 157/242 (64%), Gaps = 16/242 (6%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRAR---YKPETGDIVIGRVIEVVPKRW 106
++GHGT E+ A+V G +ER+NKL+ VRA+ +R Y PE GD+V+GR+ EV P+RW
Sbjct: 56 MRGHGTYVDNEEVIASVAGTIERVNKLVTVRAISSRHVLYNPEVGDLVVGRITEVQPRRW 115
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
K++ N QDA+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ DG++ L
Sbjct: 116 KVDANSRQDAVLMLSSINLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQAFFSDGAMSL 175
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKM 226
R+ KYGKL GQL+TV P LV+R K HF L G+DLI+G NGYIW+ +HV+ ++
Sbjct: 176 HTRSLKYGKLRNGQLVTVSPILVRRLKSHFLTL-PCGVDLILGLNGYIWVSKHVKESEQE 234
Query: 227 VVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVI 286
++G ++E + + + DE D + R I R+ N IRVL+ +T ++
Sbjct: 235 -GEEGFDAEAVYSNQN------DEIDAST-----RTAISRVTNIIRVLASHFLPLTDTLL 282
Query: 287 LE 288
L+
Sbjct: 283 LQ 284
>gi|393236149|gb|EJD43699.1| hypothetical protein AURDEDRAFT_88525 [Auricularia delicata
TFB-10046 SS5]
Length = 309
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 148/228 (64%), Gaps = 13/228 (5%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT ++ A+V G +ER+NKL+ VRALR+RY PE GD+VIGR+ EV P+RWK
Sbjct: 48 AFMRGHGTFVDGEDVIASVPGTIERVNKLVSVRALRSRYNPEVGDLVIGRITEVGPRRWK 107
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++ N QDA+LML+S+NLP G+QRR+ DEL MRS F E DL+ AEV++ DG++ L
Sbjct: 108 VDANARQDAVLMLASINLPGGVQRRKLESDELQMRSFFEEGDLLVAEVQAFFADGAMSLH 167
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R+ KYGKL GQL+TV P LV+R K HF L G+DLI+G NG +W+ +H+ R++
Sbjct: 168 TRSLKYGKLRNGQLVTVPPVLVRRLKSHFIAL-PCGVDLILGLNGRVWVSKHIH-REENE 225
Query: 228 VDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLS 275
D ++E L+ + +D+ R+ I R+ N IR L+
Sbjct: 226 ADDTFDAE-LVYSNQNDDIDI----------STREAISRVTNIIRALA 262
>gi|301108495|ref|XP_002903329.1| exosome complex exonuclease RRP4 [Phytophthora infestans T30-4]
gi|262097701|gb|EEY55753.1| exosome complex exonuclease RRP4 [Phytophthora infestans T30-4]
Length = 342
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 149/260 (57%), Gaps = 14/260 (5%)
Query: 35 CVTVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
VT G I L+GHGT + EL A+V GVVE++N+LI VR L +RY E GDI
Sbjct: 29 VVTPGQVISTDTGAFLRGHGTYLSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDI 88
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
V+GRV EV KRWK+++N QDA LMLSS+ LP G QRRRT D+L MR+ F ENDL+ A
Sbjct: 89 VVGRVTEVASKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLISA 148
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
E++ + DGSL L R+ +YGKLE GQ + V LVKR KQH L GID+I+G NGY
Sbjct: 149 EIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMATLPGIGIDVILGTNGY 208
Query: 214 IWIGEHVE--ARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREA--RQNICRIAN 269
IW+ + D + E L AK Q TP R+ I R++
Sbjct: 209 IWVSRSMAELGGDDTTSSMETRVEVLTAK---------RQQHAATPMSVDDRRKIARVSQ 259
Query: 270 AIRVLSRLGFNITVEVILET 289
A+ L+ IT + I+ T
Sbjct: 260 ALLKLNEQFRMITPDSIMAT 279
>gi|405117451|gb|AFR92226.1| exosome complex exonuclease rrp4 [Cryptococcus neoformans var.
grubii H99]
Length = 331
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 163/262 (62%), Gaps = 21/262 (8%)
Query: 34 SCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
S V+ G+ I ++ ++GHGT ++ + A+V G +ER+NKLI VR LR+RY PE GD+
Sbjct: 49 SIVSPGEVITSSKE-YMRGHGTYVEESNVVASVAGTIERVNKLISVRPLRSRYTPEVGDL 107
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
VIGR+++V +RW+++ N QDA+LMLSS+NLP G+QRR+ D L MR E DL+ A
Sbjct: 108 VIGRIVDVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGDLLVA 167
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE----EYGIDLIIG 209
EV++ GDG++ L R+ KYGKL G LLTV P L++R K HF+H+ G+D+I+G
Sbjct: 168 EVQAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHIPPPCGPTGVDVILG 227
Query: 210 CNGYIWI--GEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRI 267
NGY+W+ G E R+ +G +SE + + Q+ +P E R+ I I
Sbjct: 228 LNGYVWVSNGTSQERREG---GEGFDSEGVYSN----------QNDEISP-EGREAISLI 273
Query: 268 ANAIRVLSRLGFNITVEVILET 289
AN I+VL+ +T +I E+
Sbjct: 274 ANIIKVLASEDVPLTETLIGES 295
>gi|58258185|ref|XP_566505.1| exosome complex exonuclease rrp4 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106127|ref|XP_778074.1| hypothetical protein CNBA0770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260777|gb|EAL23427.1| hypothetical protein CNBA0770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222642|gb|AAW40686.1| exosome complex exonuclease rrp4, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 331
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 163/261 (62%), Gaps = 19/261 (7%)
Query: 34 SCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
S V+ G+ I ++ ++GHGT ++ + ++V G +ER+NKLI VR LR+RY PE GD+
Sbjct: 49 SIVSPGEVITSSKE-YMRGHGTYVEESNVVSSVAGTIERVNKLISVRPLRSRYTPEVGDL 107
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
VIGR++EV +RW+++ N QDA+LMLSS+NLP G+QRR+ D L MR E DL+ A
Sbjct: 108 VIGRIVEVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGDLLVA 167
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE----EYGIDLIIG 209
EV++ GDG++ L R+ KYGKL G LLTV P L++R K HF+H+ G+D+I+G
Sbjct: 168 EVQAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHIPPPCGPTGVDVILG 227
Query: 210 CNGYIWIGEHV-EARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIA 268
NGY+W+ +AR + +G +SE + + + DE P + R+ I +A
Sbjct: 228 LNGYVWVSNGTSQARREG--GEGFDSEGVYSNQN------DE-----IPPQGREAISLVA 274
Query: 269 NAIRVLSRLGFNITVEVILET 289
N I+ L+ G +T +I E+
Sbjct: 275 NIIKALASEGVPLTETLIGES 295
>gi|336379426|gb|EGO20581.1| hypothetical protein SERLADRAFT_476909 [Serpula lacrymans var.
lacrymans S7.9]
Length = 237
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/183 (52%), Positives = 131/183 (71%), Gaps = 6/183 (3%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + E+ A+V G +ER+NKL+ VRA+R+RY PE GD+V+GR+ EV P+RWK+
Sbjct: 55 FMRGHGTYVDQDEVIASVAGTIERVNKLVTVRAIRSRYNPEVGDLVVGRITEVQPRRWKV 114
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+ + QDAILMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ DG++ L
Sbjct: 115 DAHSRQDAILMLSSVNLPGGVQRRKLESDELQMRNFFEEGDLLVAEVQAFFSDGAMSLHT 174
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
R+ KYGKL GQL+ V P LV+R K HF L G+DLI+G NGYIW+ +HV+ +
Sbjct: 175 RSLKYGKLRNGQLIIVPPILVRRLKSHFISL-PCGVDLILGLNGYIWVSKHVKD-----I 228
Query: 229 DQG 231
DQG
Sbjct: 229 DQG 231
>gi|321252681|ref|XP_003192490.1| exosome complex exonuclease rrp4 [Cryptococcus gattii WM276]
gi|317458958|gb|ADV20703.1| Exosome complex exonuclease rrp4, putative [Cryptococcus gattii
WM276]
Length = 331
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 161/260 (61%), Gaps = 17/260 (6%)
Query: 34 SCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
S V+ G+ I ++ ++GHGT ++ + ++V G +ER+NKLI VR L +RY PE GD+
Sbjct: 49 SIVSPGEVITSSKE-YMRGHGTYVEESNVVSSVAGTIERVNKLISVRPLHSRYTPEVGDL 107
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
VIGR++EV +RW+++ N QDA+LMLSS+NLP G+QRR+ D L MR E DL+ A
Sbjct: 108 VIGRIVEVGAQRWRVDANGRQDAVLMLSSVNLPGGVQRRKIESDALKMREFLAEGDLLVA 167
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE----EYGIDLIIG 209
EV++ GDG++ L R+ KYGKL G LLTV P L++R K HF+H+ G+D+I+G
Sbjct: 168 EVQAFFGDGAMSLHTRSLKYGKLRNGFLLTVPPQLIRRLKSHFYHVPPPCGPTGVDVILG 227
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIAN 269
NGY+W+ ++ + +G +SE + + Q+ +P E R+ + IAN
Sbjct: 228 LNGYVWVSNGT-SQGRREGGEGFDSEGVYSN----------QNDEISP-EGREAVSLIAN 275
Query: 270 AIRVLSRLGFNITVEVILET 289
I+ L+ G +T +I E+
Sbjct: 276 IIKALAGEGIPLTETLISES 295
>gi|20378673|gb|AAM20932.1|AF449619_1 exonuclease [Phytophthora sojae]
gi|348674044|gb|EGZ13863.1| hypothetical protein PHYSODRAFT_249437 [Phytophthora sojae]
Length = 330
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 154/269 (57%), Gaps = 17/269 (6%)
Query: 35 CVTVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
VT G I L+GHGT + EL A+V GVVE++N+LI VR L +RY E GDI
Sbjct: 68 VVTPGQVISTDTGAFLRGHGTYLSGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDI 127
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
V+GRV +V KRWK+++N QDA LMLSS+ LP G QRRRT D+L MR+ F ENDL+
Sbjct: 128 VVGRVTDVANKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYADQLQMRAFFVENDLIST 187
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
E++ + DGSL L R+ +YGKLE GQ + V LVKR KQH L GID+I+G NGY
Sbjct: 188 EIQEVRYDGSLSLHTRSLRYGKLENGQFVAVAAPLVKRMKQHMVTLPGLGIDVILGTNGY 247
Query: 214 IWIGEHVEARDKMVVDQGSNS-----EQLIAKCDKNSMDLDEQDGTCTPR--EARQNICR 266
IW+ + A + S+S E L AK Q TP E R+ I R
Sbjct: 248 IWVSRSMAALGGDDAEDTSSSMETRVEVLTAK---------RQLHASTPMSVEDRRKIAR 298
Query: 267 IANAIRVLSRLGFNITVEVILETVNLSNS 295
++ A+ L+ IT E I+ T L S
Sbjct: 299 VSQALLKLNEQFRLITPESIMATYELLES 327
>gi|403415869|emb|CCM02569.1| predicted protein [Fibroporia radiculosa]
Length = 308
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 154/276 (55%), Gaps = 32/276 (11%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT E+ A+V G VER+NKLI VRA+R RY PE GD+V+GR+ EV P+RWK
Sbjct: 30 AFMRGHGTYVDNEEVIASVAGTVERVNKLISVRAVRTRYNPEVGDLVVGRITEVQPRRWK 89
Query: 108 LEINFTQDAILMLSSMNLPDGIQ-------------------RRRTAVDELNMRSIFTEN 148
++ N QDA+LMLSS+NLP G+Q RR+ DEL MR+ F E
Sbjct: 90 VDANSRQDAVLMLSSVNLPGGVQVSSFGVLASYVTSILRILKRRKLESDELQMRTFFEEG 149
Query: 149 DLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLII 208
DL+ AEV++ DG++ L R+ +YGKL GQL+ + P L++R K HF L G+DLI+
Sbjct: 150 DLLVAEVQAFFADGAMSLHTRSLRYGKLRNGQLIAIPPVLIRRLKSHFISL-PCGVDLIL 208
Query: 209 GCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIA 268
G NGY+W+ +H++ Q E A+ ++ + D D T R I R++
Sbjct: 209 GLNGYVWVSKHIKQ------SQQEGEEAFDAEAVYSNRNDDIDDAT------RIAISRVS 256
Query: 269 NAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
N IRV +T +LE + DI D L
Sbjct: 257 NIIRVFGAHFIPLTDTSLLEAYEWAVEQEYDIRDSL 292
>gi|148234237|ref|NP_001085606.1| exosome component 2 [Xenopus laevis]
gi|49256126|gb|AAH73011.1| MGC82596 protein [Xenopus laevis]
Length = 293
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 142/205 (69%), Gaps = 4/205 (1%)
Query: 13 KVRLEKALERL-ESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVE 71
+VRL A +R+ E L S+ + VT GDTI + G ++GHGT + +L A+V GVVE
Sbjct: 4 EVRLPVAQKRVSEELGSQGGLH-LVTPGDTIST-DSGFMRGHGTYTEDDKLVASVAGVVE 61
Query: 72 RINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQR 131
R+NKLI VRAL+ARY E GDIV+GR+ EV KRWK++ N D++L+LS++NLP G R
Sbjct: 62 RVNKLICVRALKARYNGEVGDIVVGRITEVQQKRWKVDTNSRLDSVLLLSAVNLPGGELR 121
Query: 132 RRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR 191
RR+A DEL MRS E DL+ AEV++ DG+L L R+ KYGKL +G L+ V P L+KR
Sbjct: 122 RRSAEDELAMRSYLQEGDLISAEVQAVYSDGALSLHTRSLKYGKLGQGLLVQVSPSLIKR 181
Query: 192 RKQHFHHLEEYGIDLIIGCNGYIWI 216
RK HFH+L G +I+G NG+IW+
Sbjct: 182 RKTHFHNL-TCGASVILGNNGFIWL 205
>gi|392577741|gb|EIW70870.1| hypothetical protein TREMEDRAFT_28582 [Tremella mesenterica DSM
1558]
Length = 300
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 156/255 (61%), Gaps = 21/255 (8%)
Query: 27 SSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARY 86
SS N V G+ I ++ ++GHGT + ++ +++ G +ER+NKL+ VRAL++RY
Sbjct: 13 SSTGLTNRVVAPGEAIASSKE-YMRGHGTYVEDDQVVSSIAGTIERVNKLVSVRALKSRY 71
Query: 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFT 146
PE GD+V+GR++EV RWK++ + QDAILMLSS+NLP G+QRR+ D L MR
Sbjct: 72 TPEVGDLVVGRIVEVGSLRWKVDAHARQDAILMLSSVNLPGGVQRRKIESDALKMREFLA 131
Query: 147 ENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE----EY 202
E DL+ AEV++ DG++ L R+ +YGKL G LL+V P L++R K HFHHL
Sbjct: 132 EGDLLVAEVQAFFQDGAMSLHTRSLRYGKLRNGLLLSVQPRLIRRLKSHFHHLPPPLGPS 191
Query: 203 GIDLIIGCNGYIWI--GEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREA 260
G+D+I+G NGYIW+ G E R+ +G ++E + + DKN P E
Sbjct: 192 GVDVILGLNGYIWVAAGTTAERREG---GEGFDAEGVYS--DKND---------DIPPEG 237
Query: 261 RQNICRIANAIRVLS 275
R+ I +AN I++ +
Sbjct: 238 REAISLVANMIQLFA 252
>gi|452822004|gb|EME29028.1| exosome complex component RRP4 [Galdieria sulphuraria]
Length = 300
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 162/277 (58%), Gaps = 33/277 (11%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + ++ +++GHGT Q L +TV G+VER+NKL+ V +RARY E GD+++
Sbjct: 31 VAPGDDI-LSQESVVRGHGTMVQGTRLTSTVAGIVERVNKLVAVLPIRARYSAEVGDVIV 89
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ ++V +RWK+++N QDA+L+LS++NLP G+QRRRT DEL MR F ++DL+ AEV
Sbjct: 90 GRIRDIVSRRWKVDVNSRQDAVLLLSAVNLPGGVQRRRTYEDELKMREFFDQDDLISAEV 149
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+ + DG + L R+ KYGKLE G ++V P LVKR K+HFH L G+ +I+G NGY+W
Sbjct: 150 QELKQDGLIMLHTRSLKYGKLENGIFISVTPQLVKRSKKHFHRL-SCGVHIILGDNGYVW 208
Query: 216 IGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR--------EARQNICRI 267
I VD + E DE++ + R E R ++ R+
Sbjct: 209 I----------YVDDAAYGE-------------DEEEANFSKRRENDKSNLEQRLSLIRV 245
Query: 268 ANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
N+I +L +I E I+ + N+ + ML
Sbjct: 246 RNSICILDLYFLSIQPETIMLIYEETIRRNIPVQHML 282
>gi|169865500|ref|XP_001839349.1| exosome complex exonuclease rrp4 [Coprinopsis cinerea okayama7#130]
gi|116499570|gb|EAU82465.1| exosome complex exonuclease rrp4 [Coprinopsis cinerea okayama7#130]
Length = 314
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 159/255 (62%), Gaps = 13/255 (5%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT + E+ A+V G +ER+N+L+ VR RY PE GD+V+GR+ EV P+RWK++
Sbjct: 56 MRGHGTYVENEEVIASVTGTIERVNRLVTVRPANCRYNPEVGDLVVGRITEVQPRRWKVD 115
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
N QDA+LMLSS+NLP G+QRR+ DEL MR+ F E DL+ AEV+S DG++ L R
Sbjct: 116 ANSRQDAVLMLSSVNLPGGVQRRKLESDELQMRTFFEEGDLLVAEVQSFFADGAMSLHTR 175
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVD 229
+ KYGKL GQL+ V L++R K HF L +D+I+G NGYIW+ +H++ ++ +
Sbjct: 176 SLKYGKLRNGQLVCVPSVLIRRLKSHFLTL-PCNVDIILGLNGYIWVSKHIKESEQE-GE 233
Query: 230 QGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILET 289
G ++E + + + DE D T T R+ I R++N I +L+ +T ++LE
Sbjct: 234 LGFDAEAVYSNQN------DEID-TAT----REAIARVSNIILILASHFIPLTDTLLLEA 282
Query: 290 VNLSNSLNLDIHDML 304
+ + DI+ L
Sbjct: 283 YTWTTKQDSDINAHL 297
>gi|331228344|ref|XP_003326839.1| exosome complex component RRP4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305829|gb|EFP82420.1| exosome complex component RRP4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 142/239 (59%), Gaps = 9/239 (3%)
Query: 55 TSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQ 114
T +G + +++ G VERINKLI V L RY+PE GD+VIGR+ EV KRWK+E Q
Sbjct: 72 TQTSEGLIRSSLAGTVERINKLITVIPLSGRYRPEVGDLVIGRITEVQSKRWKVEAGGRQ 131
Query: 115 DAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYG 174
A+LML S+NLP G+QRR+ DEL MR F E DL+ AEV+ GDGS+ L R++KYG
Sbjct: 132 HAVLMLGSVNLPGGVQRRKLESDELQMRFFFQEGDLLVAEVQGFFGDGSMSLHTRSRKYG 191
Query: 175 KLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNS 234
KL G LL V L+ R K HFH L GIDLIIG NG+IWI + R +D+ S
Sbjct: 192 KLRNGMLLKVPSQLILRLKSHFHIL-PIGIDLIIGVNGWIWIAQQ---RAHTELDE-SLK 246
Query: 235 EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
E A+ D D++E T T R NI R+A AI +LS I+ IL T S
Sbjct: 247 EAFEAEADNMYSDVNEPISTKT----RANIARLAGAINLLSTHSIPISDSSILRTYQAS 301
>gi|388580789|gb|EIM21101.1| hypothetical protein WALSEDRAFT_19193 [Wallemia sebi CBS 633.66]
Length = 302
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 155/253 (61%), Gaps = 15/253 (5%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
+ GHGT G + + + GVVER+NKL+ VR L+ +Y P+ GD+VIGR++EV KRWK+
Sbjct: 32 MHGHGTYVNDGNIISQMSGVVERVNKLVSVRPLKHKYLPQVGDLVIGRIVEVQAKRWKVN 91
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
IN DA+LMLSS+NLP G+QRR+ DEL MR+ FTE DL AEV+S DGS+ L R
Sbjct: 92 INAASDAVLMLSSINLPGGVQRRKLESDELQMRNFFTEGDLCVAEVQSFFHDGSVSLHTR 151
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV- 228
+ KYGKL G L TV P L++R K HF+ L +DLIIG NG IW+ +H++ ++ +
Sbjct: 152 SLKYGKLRNGTLATVQPNLMRRLKSHFYTL-PVNVDLIIGLNGRIWVSKHMQVGQEVNLN 210
Query: 229 --DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVI 286
++G +SE + + + D+D Q R++I R A I +L+ +T +I
Sbjct: 211 EENEGFDSEGVYSNEND---DIDSQ--------TRESINRTAIVINILASHTVPLTDSLI 259
Query: 287 LETVNLSNSLNLD 299
+++ L D
Sbjct: 260 ATAYDVAVDLEGD 272
>gi|71021183|ref|XP_760822.1| hypothetical protein UM04675.1 [Ustilago maydis 521]
gi|46100196|gb|EAK85429.1| hypothetical protein UM04675.1 [Ustilago maydis 521]
Length = 470
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 152/262 (58%), Gaps = 17/262 (6%)
Query: 49 ILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRW 106
+KGHGT S E+ +++CG VER+NKLI VR R+RY E GD+VIGR+ EV PKRW
Sbjct: 171 FMKGHGTFLSADTDEILSSMCGTVERVNKLISVRPARSRYAAEVGDLVIGRITEVGPKRW 230
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
K++IN D+ L LSS+NLP GIQRR+ DEL MRS F ENDL+ AEV+ D S L
Sbjct: 231 KVDINAKTDSALQLSSINLPGGIQRRKIESDELQMRSFFQENDLLVAEVQMMFQDNSSAL 290
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE----EYGIDLIIGCNGYIWIGEHVEA 222
R+ +YGKL G L+TV P L++R K HF HL+ + +DL+IG NGYIWI +H
Sbjct: 291 HTRSLRYGKLRNGILVTVSPNLIQRLKSHFVHLKHDELQLDVDLVIGLNGYIWIAKHFAY 350
Query: 223 RDKMVVDQGSNSEQLIAKCDKN-------SMDLD----EQDGTCTPREARQNICRIANAI 271
+ + + D+ MD+D +Q+ R+ I R+A I
Sbjct: 351 TQPSNSSTTATAPASASAADQTGLAGSGIGMDIDATYSDQNDADLSISLRRQIQRVAKCI 410
Query: 272 RVLSRLGFNITVEVILETVNLS 293
+L+ I+ IL+ +++S
Sbjct: 411 HILNTYHHPISDTSILDLIHIS 432
>gi|308804591|ref|XP_003079608.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4 (ISS)
[Ostreococcus tauri]
gi|116058063|emb|CAL54266.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4 (ISS)
[Ostreococcus tauri]
Length = 261
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 149/253 (58%), Gaps = 18/253 (7%)
Query: 79 VRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE 138
VRAL++RY PETGD+V+G+V V KRW L+IN Q+ +L LS+++LP +QRRR VDE
Sbjct: 8 VRALKSRYVPETGDVVLGKVTNVSGKRWILDINARQNGVLQLSAVHLPGNVQRRRNDVDE 67
Query: 139 LNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHH 198
LNMR+++ E D+V +EV+S DG+ L R+ KYG+L+RGQL+ V LV+R QHFH
Sbjct: 68 LNMRTLYAEGDIVSSEVQSVYSDGAAALHTRSLKYGRLKRGQLVRVTANLVRRLPQHFHR 127
Query: 199 LE-----------EYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMD 247
LE + +++++GCNGYIW+G A +L + + D
Sbjct: 128 LEMDEFHDSVATGTHDVEILLGCNGYIWVGAPSAA-------TAPRETELRREPNDAIDD 180
Query: 248 LDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSE 307
L+E G P R+NI R+A A+R L+ L I+ +++ +S + + DMLG
Sbjct: 181 LNEAYGDKVPLPQRENISRVALAVRALAELFLPISPPAVMDVFKVSKEWGVAVQDMLGQG 240
Query: 308 FYVLVAESEAERR 320
F + E E ++R
Sbjct: 241 FLTRILEREVDKR 253
>gi|321477199|gb|EFX88158.1| hypothetical protein DAPPUDRAFT_305543 [Daphnia pulex]
Length = 292
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 160/291 (54%), Gaps = 23/291 (7%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+RL + ++ + P VT G I E G ++GHGT Q L ++V GVVER+
Sbjct: 4 IRLASEVPPFHIVADSTEPKHLVTPGSLI-TKETGFMRGHGTYMQDDCLYSSVAGVVERV 62
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
N+LI VR L++RY E GD+VIGRV EV KRWKL+ N D++L+L S+NLP G RRR
Sbjct: 63 NQLISVRPLKSRYHGEIGDVVIGRVTEVSQKRWKLDTNARLDSVLLLQSVNLPGGELRRR 122
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DEL MR E DLV AEV++ DG+L L R+ KYGKL +G L+ V P L++R+K
Sbjct: 123 SAEDELAMRQYLKEGDLVSAEVQNIFNDGALSLHTRSMKYGKLSQGCLIKVSPSLIRRQK 182
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG 253
HFH+L G +I+G NG++WI ++D G+ Q+
Sbjct: 183 THFHNL-PCGASIIMGNNGFVWIC-------PTLLDDGAGGFV--------------QNL 220
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
P RQ I R+ N + L+ I I+ + S + L+I D+L
Sbjct: 221 ETVPHADRQAISRLRNCVTALAHCKMMIYDTSIMHAYDASVNAGLEIKDLL 271
>gi|71895889|ref|NP_001025658.1| exosome component 2 [Xenopus (Silurana) tropicalis]
gi|60688075|gb|AAH91582.1| exosome component 2 [Xenopus (Silurana) tropicalis]
Length = 293
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/205 (50%), Positives = 140/205 (68%), Gaps = 4/205 (1%)
Query: 13 KVRLEKALERL-ESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVE 71
+VRL A +R+ E L + S + VT GDTI + G ++GHGT + +L A+V GVVE
Sbjct: 4 EVRLPAAQKRVSEELGTGSGLH-LVTPGDTITT-DTGFMRGHGTYTEDDKLVASVAGVVE 61
Query: 72 RINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQR 131
R+NKLI VRAL+ARY E GDIV+GR+ EV KRWK++ N D++L+LS++NLP G R
Sbjct: 62 RVNKLICVRALKARYNGEVGDIVVGRITEVQQKRWKVDTNSRLDSVLILSAVNLPGGELR 121
Query: 132 RRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR 191
RR+A DEL MR E DL+ AEV++ DG+L L R+ KYGKL +G L+ V P L+KR
Sbjct: 122 RRSAKDELAMRDYLQEGDLISAEVQAVYSDGALSLHTRSLKYGKLGQGVLVRVSPSLIKR 181
Query: 192 RKQHFHHLEEYGIDLIIGCNGYIWI 216
RK HFH+L G +I+ NG+IW+
Sbjct: 182 RKTHFHNL-PCGASIILANNGFIWL 205
>gi|291223949|ref|XP_002731965.1| PREDICTED: exosome component 2-like [Saccoglossus kowalevskii]
Length = 291
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 130/192 (67%), Gaps = 2/192 (1%)
Query: 30 SNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
S P V+ GD I + G ++GHGT + +L A+V GVVER+NKLI V+ L+ RY E
Sbjct: 18 SEPRGLVSPGDVI-TSDTGFMRGHGTYMEDDKLHASVAGVVERVNKLICVQPLKTRYNGE 76
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
GD+V+GR+ EV KRW+++ N ++ILMLSS+NLP G RRR+A DEL MR +E D
Sbjct: 77 VGDVVVGRITEVGQKRWRVDTNSRLNSILMLSSVNLPGGELRRRSAEDELMMRQYLSEGD 136
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIG 209
L+ AEV+S DG+L L R+ KYGKL +G LL V P LVKRRK HFH+L G +I+G
Sbjct: 137 LISAEVQSVFSDGALSLHTRSLKYGKLGQGILLKVSPSLVKRRKTHFHNL-PCGASVILG 195
Query: 210 CNGYIWIGEHVE 221
NGYIWI VE
Sbjct: 196 NNGYIWISPTVE 207
>gi|322791339|gb|EFZ15829.1| hypothetical protein SINV_08775 [Solenopsis invicta]
Length = 639
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/278 (41%), Positives = 163/278 (58%), Gaps = 24/278 (8%)
Query: 37 TVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
T G+ I D L+GHGT D+ L A+V G++E++NKLI +R L+ARY E GD+++
Sbjct: 32 TPGEEISSQPD-FLRGHGTYVDEDKTLRASVAGILEKVNKLISIRPLKARYNGEIGDLIV 90
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+++N DA+L+LSS+NLP G RRR+A DE MR E DL+CAEV
Sbjct: 91 GRITEVQQKRWKVDVNAKLDAVLLLSSVNLPGGELRRRSAEDEQTMRRYLQEGDLICAEV 150
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DGSL L AR KYGKL +G +L V P L++R+K H+H LE I LI+G NGY+W
Sbjct: 151 QSIFADGSLSLHARVLKYGKLSQGIMLKVPPMLIQRKKTHYHTLESGAI-LILGYNGYVW 209
Query: 216 IGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLS 275
IG +++ DK +G +E L + P E R R+ N I +L+
Sbjct: 210 IGANIQNVDK---SEGGFTEDL----------------SKIPVENRNVCTRLRNCILILA 250
Query: 276 RLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVA 313
+ N+ + T S ++H++L E V V+
Sbjct: 251 QC--NMLLSDTSVTYAYEESSKYEVHELLEPEPMVDVS 286
>gi|343425570|emb|CBQ69105.1| related to RRP4-3`-5` exoribonuclease [Sporisorium reilianum SRZ2]
Length = 404
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 143/254 (56%), Gaps = 10/254 (3%)
Query: 49 ILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRW 106
+KGHGT S E+ +++CG VER+NKLI VR R+RY E GD+VIGRV EV PKRW
Sbjct: 114 FMKGHGTFLSTNTDEILSSMCGTVERVNKLISVRPARSRYAAEVGDLVIGRVTEVGPKRW 173
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
K++IN D+ L LSS+NLP G+QRR+ DEL MR F ENDL+ AEV+ D S L
Sbjct: 174 KVDINAKTDSSLQLSSINLPGGVQRRKVESDELQMRHFFQENDLLVAEVQMMFQDNSSAL 233
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEE----YGIDLIIGCNGYIWIGEHVEA 222
R+ +YGKL+ G L+T P L++R K HF HL +DLIIG NGYIWI +H
Sbjct: 234 HTRSLRYGKLKNGVLVTAAPNLIQRLKSHFVHLRNDELAVDVDLIIGLNGYIWIAKHFAY 293
Query: 223 RDKMVVDQGSNSEQLIAK---CDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGF 279
+E L D ++ D D +P + R+ I R+ + VL
Sbjct: 294 SQPSNAGGAGANEGLAGSGVGMDIDATYSDTNDADLSP-DLRRQIQRVVMCVHVLDAYHH 352
Query: 280 NITVEVILETVNLS 293
I+ I V +S
Sbjct: 353 PISDVTIHAMVRIS 366
>gi|213404002|ref|XP_002172773.1| exosome complex exonuclease RRP4 [Schizosaccharomyces japonicus
yFS275]
gi|212000820|gb|EEB06480.1| exosome complex exonuclease RRP4 [Schizosaccharomyces japonicus
yFS275]
Length = 326
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + A+V G+V+R+NKLI V+ ++RY PE GD+V+GR+ EV PKRWK+
Sbjct: 66 FMRGHGTYADGARICASVAGIVQRVNKLISVKPFKSRYVPEIGDLVVGRITEVQPKRWKV 125
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+I DAILMLSS+NLP G+QRR++ DEL MR+ F ENDL+ AEV+ DGS+ +
Sbjct: 126 DIGVKLDAILMLSSINLPGGVQRRKSETDELQMRTFFQENDLLVAEVQQYFSDGSVSIHT 185
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R+ KYGKL G L V P L+ R K H + G+D+I+ NGY+WI +H+E + V
Sbjct: 186 RSLKYGKLRNGVFLKVPPVLIVRSKVHSYSFPG-GVDVILSVNGYVWISKHMETQKSSV 243
>gi|19113896|ref|NP_592984.1| exosome subunit Rrp4 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1175376|sp|Q09704.1|RRP4_SCHPO RecName: Full=Exosome complex component rrp4; AltName:
Full=Ribosomal RNA-processing protein 4
gi|1052797|emb|CAA90501.1| exosome subunit Rrp4 (predicted) [Schizosaccharomyces pombe]
Length = 329
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 142/234 (60%), Gaps = 9/234 (3%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + G + A+V G V+R+NKLI V+ LR++Y PE GD++IG++ EV PKRWK+
Sbjct: 70 FMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKV 129
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+I Q+A+LMLSS+NLP GIQRR+ DEL MRS F E DL+ AEV+ DGS+ +
Sbjct: 130 DIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHT 189
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
R+ KYGKL G L V P LV R K H + L G+D+I+ NGY+W+ +H E + V
Sbjct: 190 RSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSVS 248
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNIT 282
E A S + DE DG R NI R++ I+ L+ +T
Sbjct: 249 ITRLEEE---ASESIYSNENDEIDGYT-----RLNISRVSICIKGLASRSLPLT 294
>gi|21450259|ref|NP_659135.1| exosome complex component RRP4 [Mus musculus]
gi|62900370|sp|Q8VBV3.1|EXOS2_MOUSE RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
gi|18204420|gb|AAH21485.1| Exosome component 2 [Mus musculus]
gi|18256844|gb|AAH21807.1| Exosome component 2 [Mus musculus]
gi|74184951|dbj|BAE39092.1| unnamed protein product [Mus musculus]
gi|74188234|dbj|BAE25788.1| unnamed protein product [Mus musculus]
gi|148676565|gb|EDL08512.1| exosome component 2 [Mus musculus]
Length = 293
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL KA + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPKARKPLSESLGRDSKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +D+
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWIYPTPEHKDE 214
>gi|354502184|ref|XP_003513167.1| PREDICTED: exosome complex component RRP4-like [Cricetulus griseus]
Length = 293
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL KA + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPKARKPLSESLGRDSKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +D+
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWIYPTPEHKDE 214
>gi|344257953|gb|EGW14057.1| Exosome complex exonuclease RRP4 [Cricetulus griseus]
Length = 291
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL KA + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 2 EMRLPKARKPLSESLGRDSKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 60
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 61 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 120
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 121 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 180
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +D+
Sbjct: 181 KTHFHDL-PCGASVILGNNGFIWIYPTPEHKDE 212
>gi|157822341|ref|NP_001102422.1| exosome complex exonuclease RRP4 [Rattus norvegicus]
gi|149039049|gb|EDL93269.1| exosome component 2 (predicted) [Rattus norvegicus]
Length = 293
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL +A + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPRARKPLSESLGRDSKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGALVQVSPALVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +D+
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWIYPTPEHKDE 214
>gi|395506258|ref|XP_003757452.1| PREDICTED: exosome complex component RRP4 isoform 1 [Sarcophilus
harrisii]
Length = 293
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 137/215 (63%), Gaps = 2/215 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A +RL + V GDTI + G ++GHGT +L A+V G VER
Sbjct: 4 EIRLPVARQRLPESLDRDTQKHLVVPGDTI-TTDTGFMRGHGTYMGDEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRDFLREGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
K HFH L G +I+G NG+IWI E R++ V
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWIYPTPEQREEEV 216
>gi|170586918|ref|XP_001898226.1| exosome component 2 [Brugia malayi]
gi|158594621|gb|EDP33205.1| exosome component 2, putative [Brugia malayi]
Length = 295
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 144/259 (55%), Gaps = 21/259 (8%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + L A+V G VE++NKL+ VR L++RY E GD+VIGR+ EV KRWK+
Sbjct: 41 FMRGHGTYTRDDNLIASVAGTVEQVNKLVSVRPLKSRYNGEIGDVVIGRITEVQQKRWKV 100
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
E N ++ L+LSS+NLP G RR++ DE MR E DL+ AEV+ DG L L
Sbjct: 101 ETNSRLNSTLLLSSVNLPGGELRRKSVEDERMMREYLKEGDLISAEVQKVHSDGQLSLHT 160
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN +YGKL +G L+ + PYLVKRRK HFH L YG+ +I G NGYIWI M
Sbjct: 161 RNLRYGKLSQGTLVKISPYLVKRRKSHFHTL-PYGVSVIFGRNGYIWIAPVASEEQNMTG 219
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
N E++I P + R I R+AN + +L+ +I +
Sbjct: 220 GYSQNLEEVI------------------PMKIRTVIARVANCVNILAM--HHIPLYDTTV 259
Query: 289 TVNLSNSLNLDIHDMLGSE 307
+ SLN +I D+L E
Sbjct: 260 VLAYDASLNSEIKDLLKLE 278
>gi|334311846|ref|XP_003339672.1| PREDICTED: exosome complex component RRP4-like [Monodelphis
domestica]
Length = 293
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 136/213 (63%), Gaps = 2/213 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A +RL + V GDTI + G ++GHGT +L A+V G VER
Sbjct: 4 EIRLPVARQRLPESLDRDTQKHLVVPGDTI-TTDTGFMRGHGTYMGDEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRDFLREGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E R++
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWIYPTPEQREE 214
>gi|324507327|gb|ADY43111.1| Exosome complex exonuclease RRP4 [Ascaris suum]
Length = 297
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 155/280 (55%), Gaps = 29/280 (10%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT EL A+V G VE++NKL+ V+ +++RY E GD+V+GR+ EV KRWK+
Sbjct: 40 FMRGHGTYLSGEELIASVAGAVEQVNKLLTVKPIKSRYNGEIGDVVVGRITEVQQKRWKV 99
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
E D+ LMLSS+NLP G RR++ DEL MR E DL+ AEV+ DG L L
Sbjct: 100 ETYARLDSTLMLSSVNLPGGELRRKSVEDELMMREYLKEGDLISAEVQKVHNDGQLSLHT 159
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN KYGKL +G L+ V PYLVKRRK HFH L G +I+GCNG IWI
Sbjct: 160 RNLKYGKLSQGTLVKVSPYLVKRRKSHFHTL-PCGASIILGCNGNIWISP---------- 208
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLG---FNITVEV 285
SE+ A + +LDE P E R I R+AN + VL++ ++ TV +
Sbjct: 209 ---VASEEQTA-TGGYAQNLDE----VIPMETRAVIARLANCVNVLAKHHIPLYDTTVML 260
Query: 286 ILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRSLSKR 325
E S N ++ D+L VA A+R L KR
Sbjct: 261 AHEA-----SSNYEVKDLLKPAVATEVAAEVADR--LEKR 293
>gi|115727635|ref|XP_789513.2| PREDICTED: exosome complex component RRP4-like [Strongylocentrotus
purpuratus]
Length = 291
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 129/187 (68%), Gaps = 2/187 (1%)
Query: 30 SNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
+ P VT G TI D ++GHGT ++ EL A+V GVVE++NKLI VR L+ RY E
Sbjct: 18 TEPQRLVTPGATITADSD-FMRGHGTYMEEDELIASVAGVVEKVNKLISVRPLKTRYNGE 76
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
GD+++GR+ EV KRWK+++N +AILMLS++NLP G R+R+A DEL MR TE D
Sbjct: 77 VGDVIVGRIQEVGQKRWKVDVNSRLNAILMLSAVNLPGGELRKRSAEDELKMRQYLTEGD 136
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIG 209
L+ AEV+S DG+L L R+ KYGKL +G ++ V P L+KRRK HFH+L G +I+G
Sbjct: 137 LISAEVQSVFSDGALSLHTRSLKYGKLGQGIMVRVSPSLIKRRKTHFHNL-TCGASVILG 195
Query: 210 CNGYIWI 216
NGY+WI
Sbjct: 196 NNGYVWI 202
>gi|401888810|gb|EJT52759.1| exosome complex exonuclease rrp4 [Trichosporon asahii var. asahii
CBS 2479]
gi|406697467|gb|EKD00726.1| exosome complex exonuclease rrp4 [Trichosporon asahii var. asahii
CBS 8904]
Length = 277
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 141/229 (61%), Gaps = 17/229 (7%)
Query: 51 KGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEI 110
+GHGT + + ++V G +ER+NKLI VR L RY PE GD+VIGR++EV +RWK+E
Sbjct: 17 RGHGTYVENDTITSSVAGTLERVNKLISVRPLSTRYVPEVGDLVIGRIVEVAGQRWKVEA 76
Query: 111 NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN 170
N QDA+LMLSS+NLP G+QRR+ D L MR E DL+ AEV++ DG++ L R+
Sbjct: 77 NARQDAVLMLSSVNLPGGVQRRKVESDSLKMREFLAEGDLLVAEVQAFFSDGAMSLHTRS 136
Query: 171 QKYGKLERGQLLTVDPYLVKRRKQHFHHLE----EYGIDLIIGCNGYIWIGEHVEARDKM 226
KYGKL G LL++ P L++R K HF HL +G+D+I+G NGY+W+ + ++
Sbjct: 137 LKYGKLRNGMLLSLSPRLIRRLKSHFVHLPAPCGPHGVDVILGLNGYVWV--SLGSKQSR 194
Query: 227 VVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLS 275
+G SE + + D + MD ++ R I +AN I +L+
Sbjct: 195 EGAEGLESEG-VYRNDNDEMDAED----------RAAITDVANVISMLA 232
>gi|443900416|dbj|GAC77742.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp4 [Pseudozyma
antarctica T-34]
Length = 408
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 148/263 (56%), Gaps = 19/263 (7%)
Query: 49 ILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRW 106
+KGHGT S E+ +++CG VER+NKLI VR R+RY E GD+VIGR+ EV PKRW
Sbjct: 109 FMKGHGTFLSTNSEEILSSMCGTVERVNKLISVRPARSRYAAEVGDLVIGRITEVGPKRW 168
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
K++IN D+ L LSS+NLP GIQRR+ DEL MR+ F E+DL+ AEV+ D S L
Sbjct: 169 KVDINAKTDSALQLSSINLPGGIQRRKVESDELQMRNFFQEHDLLVAEVQMMFQDNSSAL 228
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE----EYGIDLIIGCNGYIWIGEHVEA 222
R+ +YGKL+ G L+T P L++R K HF HL +DLIIG NGYIWI +H
Sbjct: 229 HTRSLRYGKLKNGVLVTASPNLIQRLKSHFVHLRNDDLSLDVDLIIGLNGYIWIAKHFPY 288
Query: 223 RDKMVVDQGSNS-------EQLIAKCDKNSMDL-----DEQDGTCTPREARQNICRIANA 270
G + +Q MD+ D+ D +P E R+ I R+
Sbjct: 289 NQPSNSSSGGAASAGANSEQQKGLAGSGVGMDIDATYSDQNDPDLSP-ELRRQIQRVTKC 347
Query: 271 IRVLSRLGFNITVEVILETVNLS 293
I +L I+ IL V++S
Sbjct: 348 IHILDAYHHPISDTSILALVSIS 370
>gi|395844388|ref|XP_003794944.1| PREDICTED: exosome complex component RRP4 [Otolemur garnettii]
Length = 293
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/204 (49%), Positives = 133/204 (65%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A +RL + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKRLSESLGRETKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|224073534|ref|XP_002198761.1| PREDICTED: exosome complex component RRP4 [Taeniopygia guttata]
Length = 294
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 136/211 (64%), Gaps = 2/211 (0%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+RL L+S + + V GDTI + ++GHGT ++ +L A+V GVVER+
Sbjct: 6 MRLPAVRAPLDSSAPRGGEKHLVAPGDTI-TTDTAYMRGHGTYVEEDKLIASVAGVVERV 64
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKL+ VRAL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSS+NLP G RR+
Sbjct: 65 NKLVCVRALKGRYNGEIGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSINLPGGELRRK 124
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DEL MR E DL+ AEV+S DG++ L R+ KYGKL +G L+ V P LVKR+K
Sbjct: 125 SAEDELAMRDYLQEGDLISAEVQSIFSDGAVSLHTRSLKYGKLAQGVLVQVSPSLVKRQK 184
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARD 224
HFH L G +I+G NG+IWI E +D
Sbjct: 185 THFHDL-PCGASVILGNNGFIWIYPTPEQKD 214
>gi|392877068|gb|AFM87366.1| exosome complex component RRP4-like protein [Callorhinchus milii]
gi|392878374|gb|AFM88019.1| exosome complex component RRP4-like protein [Callorhinchus milii]
Length = 293
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 134/211 (63%), Gaps = 2/211 (0%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+RL A +R S + V GD I + G ++GHGT + +L A+V G VER+
Sbjct: 5 IRLPTARKRGSSGLAAEGSKHLVAPGDIITT-DTGFMRGHGTYMEDEKLIASVAGAVERV 63
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI V+ L+ RY E GD+V+GR+ EV KRWK+E N D++L+LSS+NLP G RRR
Sbjct: 64 NKLICVQPLQTRYNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRR 123
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DEL MR E DL+ AEV++ DG+L L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 124 SAEDELMMRDYLQEGDLISAEVQAVFADGALSLHTRSLKYGKLGQGSLVQVSPSLVKRRK 183
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARD 224
HFH+L G +I+G NGYIWI E ++
Sbjct: 184 THFHNL-PCGASIILGNNGYIWIYPFAEQKE 213
>gi|307199565|gb|EFN80153.1| Exosome complex exonuclease RRP4 [Harpegnathos saltator]
Length = 296
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 154/263 (58%), Gaps = 23/263 (8%)
Query: 49 ILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
L+GHGT D+ L A V GV+E++NKLI VR L+ARY+ E GD+++GR+ EV KRWK
Sbjct: 43 FLRGHGTYVDEDNTLRAAVGGVLEKVNKLISVRPLKARYQGEIGDVIVGRITEVQQKRWK 102
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++ N D++L+LSS+NLP G RRR+A DE MR E DLVCAEV+S D SL L
Sbjct: 103 VDTNSKLDSVLLLSSVNLPGGELRRRSAEDEQTMRRYLQEGDLVCAEVQSIFADSSLSLH 162
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
R KYGKL +G +L V P L++R+K HFH+LE LI+G NGY+WIG + + D+
Sbjct: 163 TRVLKYGKLSQGIMLKVPPMLIQRKKTHFHYLEN-STSLILGNNGYVWIGANAQNADR-- 219
Query: 228 VDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
+G +E L + P+E R+ R+ N I +L++ N+ +
Sbjct: 220 -SEGGFTEDL----------------SHIPQENREVCTRLRNCILILAQC--NMLLSDTS 260
Query: 288 ETVNLSNSLNLDIHDMLGSEFYV 310
T S+ + ++L SE V
Sbjct: 261 VTYAYEESMKYTVSELLESEAMV 283
>gi|255071045|ref|XP_002507604.1| hypothetical protein MICPUN_112705 [Micromonas sp. RCC299]
gi|226522879|gb|ACO68862.1| hypothetical protein MICPUN_112705 [Micromonas sp. RCC299]
Length = 290
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 153/269 (56%), Gaps = 20/269 (7%)
Query: 48 GILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRW 106
G L GHG ++ + VCG + +NKLI R LR++Y PE GD+V+GRV EV+ KRW
Sbjct: 23 GSLFGHGFQVSLSDDVTSNVCGPLALVNKLISARPLRSQYLPEIGDVVLGRVSEVLAKRW 82
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
K++IN DA+L LS+++LPDGIQRRR DEL+MR+ + + DL+ AEV+ DGS+ L
Sbjct: 83 KVDINIPHDAVLHLSAVHLPDGIQRRRNYDDELDMRARYGDRDLISAEVQGCFSDGSVAL 142
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL--EEYG---IDLIIGCNGYIWIGEHVE 221
R Y + GQ + V P LVKR K+HF E YG I++I GCNG IW+G
Sbjct: 143 HTRISAYSRKFNGQHIQVLPTLVKRGKRHFCDFQGENYGCTDIEVIYGCNGLIWVG---- 198
Query: 222 ARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG--TCTPREARQNICRIANAIRVLSRLGF 279
Q S + D ++ +DE + R R+ ICR+AN++RVL+ LG
Sbjct: 199 --------QSSKEAPGRSSFDADTARVDEAHDRFSYVQRAVRELICRVANSVRVLAALGM 250
Query: 280 NITVEVILETVNLSNSLNLDIHDMLGSEF 308
+ I++ S L L DM+ S F
Sbjct: 251 VVDPHNIIDVCQHSTFLGLQPKDMMISSF 279
>gi|357617380|gb|EHJ70757.1| exosome complex exonuclease RRP4 [Danaus plexippus]
Length = 299
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 146/251 (58%), Gaps = 26/251 (10%)
Query: 33 NSCVTVGDTIP-VYEDG--------ILKGHGTSDQKGELAATVCGVVERINKLIYVRALR 83
N CV + +P Y G ++GHGT + L ++V GV++++NKLI VR L+
Sbjct: 15 NHCVPCPNELPRFYTPGEVITGMQDFMRGHGTYAEDDSLKSSVAGVMQKVNKLICVRPLK 74
Query: 84 ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRS 143
+RY E GD+++GRV+EV KRWK+E N D+IL LSS+NLP G RRR+A DE MR
Sbjct: 75 SRYVGEIGDVIVGRVLEVQQKRWKVETNSRLDSILQLSSVNLPGGELRRRSAEDEQMMRK 134
Query: 144 IFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG 203
E DL+ AEV+S DGSL L R+ KYGKL +G L+ V P L+KRRK HFH+L G
Sbjct: 135 HLQEGDLISAEVQSVFSDGSLSLHTRSLKYGKLSQGVLVKVFPSLIKRRKNHFHNL-PCG 193
Query: 204 IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQN 263
+ +IIG NGYIWI H +D ++ D N +++ D R R+
Sbjct: 194 VSIIIGNNGYIWISPH--KQDVILED--------------NHDEIENYDHQAVKRSDREI 237
Query: 264 ICRIANAIRVL 274
I R+ N I L
Sbjct: 238 IARVKNCISAL 248
>gi|307183363|gb|EFN70221.1| Exosome complex exonuclease RRP4 [Camponotus floridanus]
Length = 582
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 136/202 (67%), Gaps = 6/202 (2%)
Query: 37 TVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
T G+ I D L+GHGT D++ L A+V GV+E++NKLI +R L+ARY E GD+++
Sbjct: 32 TPGEEISSQPD-FLRGHGTYVDEEKTLRASVAGVLEKVNKLISIRPLKARYNGEIGDLIV 90
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+++N DA+L+LSS+NLP G RRR+A DE MR E DL+CAEV
Sbjct: 91 GRITEVQQKRWKVDVNSKLDAVLLLSSVNLPGGELRRRSAEDEQTMRRYLQEGDLICAEV 150
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S D SL L R KYGKL +G +L V P L++R+K H+H+LE G LI+G NGY+W
Sbjct: 151 QSIFADSSLSLHTRVLKYGKLSQGIMLKVPPMLIQRKKTHYHNLEN-GATLILGYNGYVW 209
Query: 216 IGEHVEARDKMVVDQGSNSEQL 237
IG +++ DK +G +E L
Sbjct: 210 IGANIQNVDK---SEGGFTEDL 228
>gi|410979296|ref|XP_003996021.1| PREDICTED: exosome complex component RRP4 isoform 1 [Felis catus]
Length = 293
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESLDRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGTNGFIWI 205
>gi|344271564|ref|XP_003407607.1| PREDICTED: exosome complex component RRP4-like [Loxodonta africana]
Length = 293
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EIRLPVARKPLSESLGRETKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|387914922|gb|AFK11070.1| exosome complex component RRP4-like protein [Callorhinchus milii]
Length = 293
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 133/211 (63%), Gaps = 2/211 (0%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+RL A +R S + V GD I + G ++GHGT + +L A+V G VER+
Sbjct: 5 IRLPTARKRGSSGLAAEGSKHLVAPGDIITT-DTGFMRGHGTYMEDEKLIASVAGAVERV 63
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI V+ L+ RY E GD+V+GR+ EV KRWK+E N D++L+LSS+NLP G RRR
Sbjct: 64 NKLICVQPLQTRYNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRR 123
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DEL MR E DL+ EV++ DG+L L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 124 SAEDELMMRDYLQEGDLISGEVQAVFADGALSLHTRSLKYGKLGQGSLVQVSPSLVKRRK 183
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARD 224
HFH+L G +I+G NGYIWI E ++
Sbjct: 184 THFHNL-PCGASIILGNNGYIWIYPFAEQKE 213
>gi|443697103|gb|ELT97658.1| hypothetical protein CAPTEDRAFT_115301 [Capitella teleta]
Length = 290
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 127/190 (66%), Gaps = 2/190 (1%)
Query: 27 SSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARY 86
++ P +T GD I + G ++GHGT + +L A+V GVVER+NKLI VR ++ RY
Sbjct: 17 TNAQEPQHLMTPGDVITA-DTGFMRGHGTYMEDDKLHASVAGVVERVNKLICVRPIKTRY 75
Query: 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFT 146
E GD+V+GR++EV +RWK++ N D+ILMLSS+NLP G RRR+ DE MR
Sbjct: 76 HGEIGDVVVGRILEVGQRRWKVDTNAKLDSILMLSSVNLPGGELRRRSEEDEKMMRDYLN 135
Query: 147 ENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDL 206
E DL+ AEV++ DG+L L R+ KYGKL +G LL V P L+KRRK HFH+L G +
Sbjct: 136 EGDLISAEVQNVFADGALSLHTRSLKYGKLSQGILLAVSPSLIKRRKTHFHNL-PCGASI 194
Query: 207 IIGCNGYIWI 216
I+G NGY+WI
Sbjct: 195 ILGNNGYVWI 204
>gi|301758864|ref|XP_002915253.1| PREDICTED: exosome complex exonuclease RRP4-like [Ailuropoda
melanoleuca]
Length = 293
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESVGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|388857654|emb|CCF48803.1| related to RRP4-3`-5` exoribonuclease [Ustilago hordei]
Length = 408
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 150/266 (56%), Gaps = 25/266 (9%)
Query: 49 ILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRW 106
+KGHGT S E+ +++CG VER+NKLI VR R+RY E GD+VIGR+ EV PKRW
Sbjct: 113 FMKGHGTFLSSNSDEILSSMCGTVERVNKLISVRPARSRYAAEVGDLVIGRITEVGPKRW 172
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
K++IN D+ L LSS+NLP GIQRR+ DEL MR+ F ENDL+ AEV+ D S L
Sbjct: 173 KVDINAKTDSALQLSSINLPGGIQRRKVESDELQMRNFFQENDLLVAEVQMMFQDNSSAL 232
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRKQHFHH----LEEYGIDLIIGCNGYIWIGEHVEA 222
R+ +YGKL+ G L+T P L++R K HF H +DLIIG NGYIWI +H+
Sbjct: 233 HTRSLRYGKLKNGLLVTASPNLIQRLKSHFVHLKDDDLSLDVDLIIGLNGYIWIAKHLP- 291
Query: 223 RDKMVVDQGSNSEQLIAKCDKN---------SMDLD----EQDGTCTPREARQNICRIAN 269
+Q SNS A + MD+D +Q+ E R I R+A
Sbjct: 292 -----YNQPSNSSGGPATTAEQQRGLAGEGVGMDIDATYSDQNDPDLSVELRHQIQRVAK 346
Query: 270 AIRVLSRLGFNITVEVILETVNLSNS 295
I +L I+ I V++S +
Sbjct: 347 CIHILDAYHHPISDVTIHSLVSISTA 372
>gi|431898919|gb|ELK07289.1| Exosome complex exonuclease RRP4 [Pteropus alecto]
Length = 293
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 137/213 (64%), Gaps = 2/213 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSDSLGRESKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +++
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWIYPTPEQKEE 214
>gi|383865508|ref|XP_003708215.1| PREDICTED: uncharacterized protein LOC100879942 [Megachile
rotundata]
Length = 585
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 130/190 (68%), Gaps = 3/190 (1%)
Query: 37 TVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
T G+ I D L+GHGT D + L A+V GV+E++NKLI ++ L+ARY+ E GD+++
Sbjct: 32 TPGEEISSQPD-FLRGHGTYVDDENTLRASVAGVLEKVNKLISIKPLKARYQGEIGDVIV 90
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK++ N D++L+LSS+NLP G RRR+A DE MR E DL+CAEV
Sbjct: 91 GRITEVQQKRWKVDTNSKLDSVLLLSSVNLPGGELRRRSAEDEQTMRRYLQEGDLICAEV 150
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S+ DGSL L R KYGKL +G +L V P L+KR+K HFH+LE G LI+G NGY+W
Sbjct: 151 QSTFIDGSLSLHTRVLKYGKLSQGIMLKVSPALIKRKKTHFHNLEN-GASLILGNNGYVW 209
Query: 216 IGEHVEARDK 225
IG + D+
Sbjct: 210 IGASKQDTDR 219
>gi|345806241|ref|XP_850770.2| PREDICTED: exosome complex component RRP4 [Canis lupus familiaris]
Length = 432
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESVGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|149738212|ref|XP_001499276.1| PREDICTED: exosome complex component RRP4-like [Equus caballus]
Length = 293
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 133/204 (65%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESLGRESKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|355686792|gb|AER98188.1| exosome component 2 [Mustela putorius furo]
Length = 291
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESVGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|281349497|gb|EFB25081.1| hypothetical protein PANDA_003252 [Ailuropoda melanoleuca]
Length = 268
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESVGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|311246656|ref|XP_003122286.1| PREDICTED: exosome complex component RRP4-like [Sus scrofa]
Length = 293
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESLGRETKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|432116590|gb|ELK37383.1| Exosome complex component RRP4 [Myotis davidii]
Length = 293
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESLGRETKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|350416193|ref|XP_003490870.1| PREDICTED: hypothetical protein LOC100747413 [Bombus impatiens]
Length = 578
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 129/190 (67%), Gaps = 3/190 (1%)
Query: 37 TVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
T G+ I D L+GHGT D + L A+V GV+E++NKLI +R L+ARY+ E GD+V+
Sbjct: 33 TPGEEISSQPD-FLRGHGTYVDDENTLRASVAGVLEKVNKLISIRPLKARYQGEIGDVVV 91
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK++ N D++L+LSS+NLP G RRR+A DE MR E DL+CAEV
Sbjct: 92 GRITEVQQKRWKVDTNSKLDSVLLLSSVNLPGGELRRRSAEDEQTMRRYLQEGDLICAEV 151
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S+ DGSL L R KYGKL +G +L V P L+KR+K HFH+L G LI+G NGYIW
Sbjct: 152 QSTFVDGSLSLHTRVLKYGKLSQGIMLKVSPALIKRKKTHFHNLAN-GASLILGNNGYIW 210
Query: 216 IGEHVEARDK 225
IG + D+
Sbjct: 211 IGASKKDTDR 220
>gi|402896280|ref|XP_003911232.1| PREDICTED: exosome complex component RRP4 isoform 1 [Papio anubis]
gi|355567399|gb|EHH23740.1| hypothetical protein EGK_07276 [Macaca mulatta]
gi|380787773|gb|AFE65762.1| exosome complex component RRP4 [Macaca mulatta]
gi|380787781|gb|AFE65766.1| exosome complex component RRP4 [Macaca mulatta]
gi|380787783|gb|AFE65767.1| exosome complex component RRP4 [Macaca mulatta]
Length = 293
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPAARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|260786192|ref|XP_002588142.1| hypothetical protein BRAFLDRAFT_118871 [Branchiostoma floridae]
gi|229273301|gb|EEN44153.1| hypothetical protein BRAFLDRAFT_118871 [Branchiostoma floridae]
Length = 279
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 127/189 (67%), Gaps = 2/189 (1%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P VT GD I + G ++GHGT +L A++ GVVER+NKLI V+ L+ RY E G
Sbjct: 20 PKHLVTPGDVITT-DTGYMRGHGTYMDDDKLKASLAGVVERVNKLICVQPLKTRYNGEIG 78
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D+V+GRV EV +RW++++N DA+LMLS++NLP G RRR+A DEL MR E DL+
Sbjct: 79 DVVVGRVTEVGQRRWRVDVNSRLDAVLMLSAVNLPGGELRRRSAEDELMMREYLVEGDLI 138
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCN 211
AEV++ DG+L L R+ KYGKL +G ++ V P LVKRRK HFH+L G +I+G N
Sbjct: 139 SAEVQAIFHDGALSLHTRSLKYGKLAQGVMVQVSPSLVKRRKTHFHNL-PCGASVILGNN 197
Query: 212 GYIWIGEHV 220
GY+WI V
Sbjct: 198 GYVWISPTV 206
>gi|114053077|ref|NP_001040026.1| exosome complex component RRP4 [Bos taurus]
gi|122143860|sp|Q2KID0.1|EXOS2_BOVIN RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
gi|86827441|gb|AAI12684.1| Exosome component 2 [Bos taurus]
gi|296482080|tpg|DAA24195.1| TPA: exosome complex exonuclease RRP4 [Bos taurus]
Length = 293
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 133/204 (65%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESLGRESKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IW+
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWV 205
>gi|426222926|ref|XP_004005630.1| PREDICTED: exosome complex component RRP4 [Ovis aries]
gi|440900090|gb|ELR51299.1| Exosome complex exonuclease RRP4 [Bos grunniens mutus]
Length = 293
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 133/204 (65%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESLGRESKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IW+
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWV 205
>gi|198417930|ref|XP_002126379.1| PREDICTED: similar to exosome component 2 [Ciona intestinalis]
Length = 302
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 143/250 (57%), Gaps = 34/250 (13%)
Query: 36 VTVGDTIPVYEDGILKGHGT---SDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
VT GD I D ++GHGT D +L ++V GVVERINKLI VRAL++RY E GD
Sbjct: 26 VTPGDVITEDTD-YMRGHGTYCTGDADDKLYSSVAGVVERINKLICVRALKSRYTGEVGD 84
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
IV+GRV EV KRWK+E N D+IL LSS+NLP G RRR+A DELNMRS E DL+
Sbjct: 85 IVVGRVKEVQQKRWKIETNSRLDSILQLSSVNLPGGELRRRSATDELNMRSYLNEGDLIS 144
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
AEV DG L L R+ +YGKL +G L+ V P L+KRRK H H+L G +I+ NG
Sbjct: 145 AEVPQVNVDGILSLHTRSLRYGKLSQGCLVIVSPSLIKRRKNHIHNL-SCGASIILANNG 203
Query: 213 YIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG------TCTPREARQNICR 266
YIWI ++S +E DG P E R+ ICR
Sbjct: 204 YIWI-----------------------YTTQHSSQTEEGDGGFIISNESIPIEDREIICR 240
Query: 267 IANAIRVLSR 276
+ N I+ L++
Sbjct: 241 LRNCIKCLAK 250
>gi|312065758|ref|XP_003135945.1| Rrp4-PA [Loa loa]
gi|307768889|gb|EFO28123.1| Rrp4-PA [Loa loa]
Length = 295
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 146/259 (56%), Gaps = 21/259 (8%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + +L A+V G VE++NKL+ VR L++RY E GD+VIGR+ EV KRWK+
Sbjct: 41 FMRGHGTYMRGNDLIASVAGTVEQVNKLVSVRPLKSRYNGEIGDVVIGRITEVQQKRWKV 100
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
E N ++ L+LSS+NLP G RR++ DE MR E DL+ AEV+ DG L L
Sbjct: 101 ETNSRLNSTLLLSSVNLPGGELRRKSVEDERMMREYLKEGDLISAEVQKVHSDGQLLLHT 160
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN +YGKL +G L+ + PYLVKRRK HFH L G+ +I G NGYIWI V M
Sbjct: 161 RNLRYGKLSQGTLIKISPYLVKRRKSHFHTL-PCGVSVIFGRNGYIWIAPVVNEEQNMTG 219
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
N E+++ P + R I R+AN + +L+ +I +
Sbjct: 220 GYSQNLEEVV------------------PMKIRSVIARVANCVNILAM--HHIPLYDTTV 259
Query: 289 TVNLSNSLNLDIHDMLGSE 307
+ SLN +I+++L E
Sbjct: 260 VLAYDASLNSEINELLKPE 278
>gi|221108713|ref|XP_002163222.1| PREDICTED: exosome complex component RRP4-like [Hydra
magnipapillata]
Length = 291
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 141/245 (57%), Gaps = 25/245 (10%)
Query: 48 GILKGHGT-SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRW 106
G +KGHGT +D LAA+V GVVER+NKLI V+ + RY E GD+++GR+ EV KRW
Sbjct: 37 GFMKGHGTYADNANRLAASVVGVVERVNKLISVKPFKTRYNGEVGDVIVGRITEVNQKRW 96
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
+++ N +++L+LS++NLP G RRR+ DEL MR E DLV AEV+S DGSL L
Sbjct: 97 RVDTNARLNSVLLLSAVNLPGGELRRRSTKDELLMREYLIEGDLVVAEVQSIFADGSLSL 156
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKM 226
RN KYGKL +G +L V P LVKR K H H L G LI+G NGYIWIG + A
Sbjct: 157 HTRNLKYGKLPQGTILKVSPSLVKRCKTHMHSL-PCGATLILGNNGYIWIGPLMSAES-- 213
Query: 227 VVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLG---FNITV 283
D S S Q I R R+ I R+ N I +L+ G ++ +V
Sbjct: 214 --DLSSRSAQRI----------------TIQRSDREVIARLRNCITILASYGVQLYDTSV 255
Query: 284 EVILE 288
I E
Sbjct: 256 NYIYE 260
>gi|417398482|gb|JAA46274.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp4
[Desmodus rotundus]
Length = 293
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSENLGRETKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|109110020|ref|XP_001106567.1| PREDICTED: exosome complex exonuclease RRP4 isoform 1 [Macaca
mulatta]
Length = 293
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDT+ + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPAARKPLSERLGRDTKKHLVVPGDTV-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|351697304|gb|EHB00223.1| Exosome complex exonuclease RRP4 [Heterocephalus glaber]
Length = 293
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSETLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK++ N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVDTNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|296191026|ref|XP_002743446.1| PREDICTED: exosome complex component RRP4 isoform 1 [Callithrix
jacchus]
Length = 293
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|326930368|ref|XP_003211319.1| PREDICTED: exosome complex exonuclease RRP4-like [Meleagris
gallopavo]
Length = 294
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/197 (50%), Positives = 128/197 (64%), Gaps = 2/197 (1%)
Query: 29 KSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKP 88
+S V GDTI + G ++GHGT + +L A+V G VER+NKL+ V L+ RY
Sbjct: 21 RSGEKHLVVPGDTI-TTDTGYMRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNG 79
Query: 89 ETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEN 148
E GDIV+GR+ EV KRWK+E N D+IL+LSSMNLP G RRR+A DEL MR E
Sbjct: 80 EVGDIVVGRITEVQQKRWKVETNSRLDSILLLSSMNLPGGELRRRSAEDELAMRDYLQEG 139
Query: 149 DLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLII 208
DL+ AEV+S DG++ L R+ KYGKL +G L+ V P LVKR+K HFH L G +I+
Sbjct: 140 DLISAEVQSVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVIL 198
Query: 209 GCNGYIWIGEHVEARDK 225
G NG+IWI E +D+
Sbjct: 199 GNNGFIWIYPTPEQKDE 215
>gi|122920914|pdb|2NN6|H Chain H, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 308
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 133/208 (63%), Gaps = 2/208 (0%)
Query: 9 NQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCG 68
+ ++RL A + L + V GDTI + G ++GHGT + +L A+V G
Sbjct: 15 HMAMEMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAG 73
Query: 69 VVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDG 128
VER+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G
Sbjct: 74 SVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGG 133
Query: 129 IQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYL 188
RRR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P L
Sbjct: 134 ELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSL 193
Query: 189 VKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
VKR+K HFH L G +I+G NG+IWI
Sbjct: 194 VKRQKTHFHDL-PCGASVILGNNGFIWI 220
>gi|19923403|ref|NP_055100.2| exosome complex component RRP4 [Homo sapiens]
gi|114627214|ref|XP_001166030.1| PREDICTED: uncharacterized protein LOC464801 isoform 4 [Pan
troglodytes]
gi|332255330|ref|XP_003276785.1| PREDICTED: exosome complex component RRP4 isoform 1 [Nomascus
leucogenys]
gi|397503632|ref|XP_003822423.1| PREDICTED: exosome complex component RRP4 [Pan paniscus]
gi|13878748|sp|Q13868.2|EXOS2_HUMAN RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
gi|7023478|dbj|BAA91977.1| unnamed protein product [Homo sapiens]
gi|10433864|dbj|BAB14043.1| unnamed protein product [Homo sapiens]
gi|12653909|gb|AAH00747.1| Exosome component 2 [Homo sapiens]
gi|119608350|gb|EAW87944.1| exosome component 2, isoform CRA_d [Homo sapiens]
gi|123984667|gb|ABM83679.1| exosome component 2 [synthetic construct]
gi|157928498|gb|ABW03545.1| exosome component 2 [synthetic construct]
gi|208966240|dbj|BAG73134.1| exosome component 2 [synthetic construct]
gi|410219780|gb|JAA07109.1| exosome component 2 [Pan troglodytes]
gi|410288876|gb|JAA23038.1| exosome component 2 [Pan troglodytes]
gi|410288878|gb|JAA23039.1| exosome component 2 [Pan troglodytes]
gi|410332469|gb|JAA35181.1| exosome component 2 [Pan troglodytes]
Length = 293
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|355752989|gb|EHH57035.1| hypothetical protein EGM_06594 [Macaca fascicularis]
Length = 293
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPAARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KIHFHDL-PCGASVILGNNGFIWI 205
>gi|340373040|ref|XP_003385051.1| PREDICTED: exosome complex component RRP4-like [Amphimedon
queenslandica]
Length = 287
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/265 (41%), Positives = 157/265 (59%), Gaps = 19/265 (7%)
Query: 26 LSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRAR 85
++ K P+ V GD I G ++GHGT + G+L A+V GVVER+N+L+ V L+++
Sbjct: 1 MALKGEPH-YVAPGDVITA-NLGFMRGHGTYESDGKLLASVAGVVERVNRLLCVHPLKSK 58
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y E GD+V+GR+IEV KRWK+E + D++L LSS+NLP G+ RRR+A DE+ +R
Sbjct: 59 YNGEIGDVVVGRIIEVQQKRWKVETSSRLDSVLNLSSINLPGGVLRRRSAEDEVMIRDYL 118
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID 205
E DL+ AEV+ DGSL L R+ KYGKL G L+TV P LVKR K HFH+L G
Sbjct: 119 KEGDLISAEVQQVNSDGSLSLHTRSLKYGKLTEGTLVTVSPSLVKRCKNHFHNL-LCGAS 177
Query: 206 LIIGCNGYIWIGEHVEARDKMVVDQGSNSE---QLIAKCDKNSMDLDEQDGTCTPREARQ 262
LI+G NGYIWI +++D + QL + +S+ T E R+
Sbjct: 178 LILGNNGYIWI-------SPIILDDHQQEQMRFQLPSTPGSSSVKTVTHVATI---EERE 227
Query: 263 NICRIANAIRVLSR---LGFNITVE 284
I R+ N I L++ L ++ TV+
Sbjct: 228 TIARLRNCILALAQSRILLYDTTVQ 252
>gi|297685558|ref|XP_002820352.1| PREDICTED: exosome complex component RRP4 isoform 1 [Pongo abelii]
Length = 293
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRDFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|291414823|ref|XP_002723656.1| PREDICTED: exosome component 2 [Oryctolagus cuniculus]
Length = 293
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 124/181 (68%), Gaps = 2/181 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GDTI + G ++GHGT + +L A+V G VER+NKLI V+AL+ RY E GDIV+
Sbjct: 27 VVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGCVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 145
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
++ DG++ L R+ KYGKL +G L+ V P LVKR+K HFH L G +I+G NG+IW
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIW 204
Query: 216 I 216
I
Sbjct: 205 I 205
>gi|340711590|ref|XP_003394358.1| PREDICTED: hypothetical protein LOC100650841 [Bombus terrestris]
Length = 586
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 129/190 (67%), Gaps = 3/190 (1%)
Query: 37 TVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
T G+ I D L+GHGT D + L A+V GV+E++NKLI +R L+ARY+ E GD+V+
Sbjct: 33 TPGEEISSQPD-FLRGHGTYVDDENTLRASVAGVLEKVNKLISIRPLKARYQGEIGDVVV 91
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV +RWK++ N D++L+LSS+NLP G RRR+A DE MR E DL+CAEV
Sbjct: 92 GRITEVQQRRWKVDTNSKLDSVLLLSSVNLPGGELRRRSAEDEQTMRRYLQEGDLICAEV 151
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S+ DGSL L R KYGKL +G +L V P L+KR+K HFH+L G LI+G NGYIW
Sbjct: 152 QSTFVDGSLSLHTRVLKYGKLSQGIMLKVSPALIKRKKTHFHNLAN-GASLILGNNGYIW 210
Query: 216 IGEHVEARDK 225
IG + D+
Sbjct: 211 IGASKKDTDR 220
>gi|149410316|ref|XP_001507703.1| PREDICTED: exosome complex component RRP4-like [Ornithorhynchus
anatinus]
Length = 293
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 128/190 (67%), Gaps = 2/190 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GDTI + G ++GHGT + +L A+V G VER+NKLI V+AL+ RY E GDIV+
Sbjct: 27 VVPGDTITT-DPGFMRGHGTYMENEKLIASVVGCVERVNKLICVKALKTRYNGEVGDIVV 85
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GRV EV KRWK++ N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV
Sbjct: 86 GRVTEVQQKRWKVDTNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDFLQEGDLISAEV 145
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
++ DG++ L R+ KYGKL +G L+ V P LVKR+K HFH L G +I+G NG+IW
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASIILGNNGFIW 204
Query: 216 IGEHVEARDK 225
I E +++
Sbjct: 205 IYPTSEQKEE 214
>gi|327291047|ref|XP_003230233.1| PREDICTED: exosome complex exonuclease RRP4-like [Anolis
carolinensis]
Length = 293
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 128/190 (67%), Gaps = 2/190 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GDTI + G ++GHGT +L A+V G+VER+NKL+ V+AL+ RY E GDIV+
Sbjct: 27 VAPGDTI-TTDPGYMRGHGTYLGDEKLIASVAGLVERVNKLVCVKALKTRYNGEVGDIVV 85
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEV 145
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
++ DG++ L R+ KYGKL +G L+ V P LVKR+K HFH L G +I+G NG+IW
Sbjct: 146 QAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIW 204
Query: 216 IGEHVEARDK 225
I E +D+
Sbjct: 205 IYPTPEQKDE 214
>gi|153792053|ref|NP_001012816.2| exosome component 2 [Gallus gallus]
Length = 294
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 126/190 (66%), Gaps = 2/190 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GDTI + G ++GHGT + +L A+V G VER+NKL+ V L+ RY E GDIV+
Sbjct: 28 VVPGDTI-TTDTGYMRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVV 86
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV
Sbjct: 87 GRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEV 146
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG++ L R+ KYGKL +G L+ V P LVKR+K HFH L G +I+G NG+IW
Sbjct: 147 QSVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIW 205
Query: 216 IGEHVEARDK 225
I E +D+
Sbjct: 206 IYPTPEQKDE 215
>gi|402590946|gb|EJW84876.1| exosome complex exonuclease RRP4 [Wuchereria bancrofti]
Length = 295
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 143/259 (55%), Gaps = 21/259 (8%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + L A+V G VE++NKL+ VR L++RY E GD+VIGR+ EV KRWK+
Sbjct: 41 FMRGHGTYMRDDNLIASVAGTVEQVNKLVSVRPLKSRYNGEIGDVVIGRITEVQQKRWKV 100
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
E N ++ L+LSS+NLP G RR++ DE MR E DL+ AEV+ DG L L
Sbjct: 101 ETNSRLNSTLLLSSVNLPGGELRRKSVEDERMMREYLKEGDLISAEVQKVHSDGQLSLHT 160
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN +YGKL +G L+ + PYLVKRRK HFH L G+ +I G NGYIWI M
Sbjct: 161 RNLRYGKLSQGTLVKISPYLVKRRKSHFHTL-PCGVSVIFGRNGYIWIAPVASEEQNMTG 219
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
N E++I P + R I R+AN + +L+ +I +
Sbjct: 220 GYSQNLEEII------------------PMKIRTVIARVANCVNILAM--HHIPLYDTTV 259
Query: 289 TVNLSNSLNLDIHDMLGSE 307
+ SLN +I ++L E
Sbjct: 260 VLAYDASLNCEIKELLKLE 278
>gi|299471475|emb|CBN79426.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 271
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 121/175 (69%), Gaps = 6/175 (3%)
Query: 48 GILKGHGTSDQKG------ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEV 101
G L+GHGT ++G +L A V GVVER+NKLI VR +++RY E GD+V+GRV EV
Sbjct: 20 GYLRGHGTYVEEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVTEV 79
Query: 102 VPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD 161
KRW +E+ + A+LMLSS+NLP G QR RT D+L MRS F E+DL+ AEV+ D
Sbjct: 80 QSKRWSVEVGAHRSAVLMLSSVNLPGGQQRMRTYEDQLQMRSFFQEHDLISAEVQQVNSD 139
Query: 162 GSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
G + L R+ KYGKLE GQL++V P L++R KQH L + G+D+I+G NG +WI
Sbjct: 140 GGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWI 194
>gi|403256505|ref|XP_003920914.1| PREDICTED: exosome complex component RRP4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 293
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 131/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTAFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>gi|146218712|emb|CAM96513.1| RRP4 protein [Chironomus tentans]
Length = 291
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 26/241 (10%)
Query: 37 TVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIG 96
T G+ I +D ++GHGT + G + ++V GVV++INKLI V L+++Y E GD+V+G
Sbjct: 28 TTGEVITEQKD-FMRGHGTYLEDGFIKSSVVGVVKQINKLISVVPLKSKYVGEIGDVVVG 86
Query: 97 RVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVR 156
RV E+ KRWK++ N D++L++SS+NLP G RRR A DE +MR + E DL+ AEV+
Sbjct: 87 RVTEITKKRWKIDTNSRLDSVLLISSINLPGGELRRRNAEDEQSMRKLLQEEDLLSAEVQ 146
Query: 157 SSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
+ DGSL L R+ KYGKL +G L++V P L+KRRK HFH+L G+ +IIG NGYIW+
Sbjct: 147 NVYTDGSLSLHTRSLKYGKLSQGILISVSPSLIKRRKNHFHNL-PCGVSVIIGNNGYIWV 205
Query: 217 GE--HVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVL 274
HVE +QG Q + K R+ I R+ N I+ L
Sbjct: 206 APIVHVE-------EQGGGFAQCLDPVSKGD---------------RETIVRVKNCIQAL 243
Query: 275 S 275
S
Sbjct: 244 S 244
>gi|318037498|ref|NP_001187370.1| exosome complex exonuclease rrp4 [Ictalurus punctatus]
gi|308322839|gb|ADO28557.1| exosome complex exonuclease rrp4 [Ictalurus punctatus]
Length = 294
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 127/194 (65%), Gaps = 2/194 (1%)
Query: 23 LESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
L ++ S S+ V GD I + G ++GHGT +L A+V G VER+NKLI VR L
Sbjct: 15 LPAIHSSSDGKHLVVPGDVI-TSDTGFMRGHGTYMDDEKLTASVAGEVERVNKLICVRPL 73
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ R+ E GD+V+GR+ EV KRWK+ N D++L+LSS+NLP G RRR+A DEL MR
Sbjct: 74 KTRFNGEVGDVVVGRITEVQQKRWKVGTNSRLDSVLLLSSVNLPGGELRRRSAEDELTMR 133
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
E DL+ AEV+S DG+L L R+ KYGKL +G L+ V P L+KR+K HFH+L
Sbjct: 134 DYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQVSPSLIKRQKTHFHNL-TC 192
Query: 203 GIDLIIGCNGYIWI 216
G +I+G NGY+WI
Sbjct: 193 GASIILGNNGYVWI 206
>gi|358060848|dbj|GAA93466.1| hypothetical protein E5Q_00107 [Mixia osmundae IAM 14324]
Length = 316
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 146/255 (57%), Gaps = 12/255 (4%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT + +T+ G V+R+NKL+ VRALR RYKPE GD++IGR++EV KRWK++
Sbjct: 42 MRGHGTYVADESVVSTMAGTVDRVNKLVSVRALRGRYKPEVGDLIIGRIVEVQAKRWKVD 101
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
+ Q A L+LSS+NLP G+QRR+ DEL MR+ F E DL+ AEV++ +G + L R
Sbjct: 102 ASSRQFASLLLSSINLPGGVQRRKLESDELQMRTFFQEGDLLVAEVQALYANGEMSLHTR 161
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVD 229
+ K+GKL G L+ V L+ R+K HFH L G++LIIG NG+IWI + A +
Sbjct: 162 SLKFGKLRNGVLVRVQSQLIVRQKSHFHAL-PCGVNLIIGMNGWIWIYQPSPAESNTSRN 220
Query: 230 QGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQN-----ICRIANAIRVLSRLGFNITVE 284
G ++ L + D D + + N I R A I+ L+ +T
Sbjct: 221 NGIGADGL------ETTDTDASMLYSSTNDPLDNVIMIAIARTAAVIQALANNNVPLTDS 274
Query: 285 VILETVNLSNSLNLD 299
I E +S L +D
Sbjct: 275 SIAEAYEVSQELEID 289
>gi|193695380|ref|XP_001950290.1| PREDICTED: exosome complex exonuclease RRP4-like [Acyrthosiphon
pisum]
Length = 292
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 160/297 (53%), Gaps = 30/297 (10%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+ L R L SNP T G+ I + G ++GHGT G L ATV GV + I
Sbjct: 5 ISLASKKTRHAVLKPSSNPPIIFTPGEKIR-DQTGFMRGHGTYVSAGSLKATVAGVEQNI 63
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKL+ V LR RY E GD+VI RV E+V KRWK++IN DA+L+L+S+ LP G RRR
Sbjct: 64 NKLVTVSPLRCRYNGEIGDVVIARVTELVHKRWKVDINARLDAVLLLTSIQLPGGELRRR 123
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
DE +MRS +E DL+ AEV S DGSL L R+ KYGKL +G L+ V L+KR K
Sbjct: 124 GMEDEQSMRSYLSEGDLISAEVHSVFADGSLSLHMRSLKYGKLGQGVLVKVQSNLIKRSK 183
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG 253
HFH+L G+ +I+G NGYIWI + +D + + + +Q++ D
Sbjct: 184 NHFHNLSA-GVSVILGNNGYIWIEPTNDNKDPVGFE--VDLQQVVDIGD----------- 229
Query: 254 TCTPREARQNICRIANAIRVLSR---LGFNITVEVILETVNLSNSLNLDIHDMLGSE 307
RQ I R+ N + LS L ++ +++ LE N + D+L +E
Sbjct: 230 -------RQTISRVRNVVLALSYYKMLIYDTSIQYALEESN-----KYTVSDLLTAE 274
>gi|449019924|dbj|BAM83326.1| exosome complex exonuclease Rrp4 [Cyanidioschyzon merolae strain
10D]
Length = 305
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 155/287 (54%), Gaps = 29/287 (10%)
Query: 11 TQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHG----TSDQKGELAATV 66
T R LE+ L + S GD I E L+GHG SD+ L AT+
Sbjct: 7 TANGRFHTPLEQRIPLPKVAPAASLALPGDAIYAPEQNTLRGHGIFWTPSDESKVLRATL 66
Query: 67 CGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVP--KRWKLEINFTQDAILMLSSMN 124
G VERINKL+ +R+ R RY P GD+V+GR+ +V+P +RWK++I QDA+L L ++
Sbjct: 67 AGTVERINKLVTIRSWRGRYVPNVGDVVVGRIAQVLPASRRWKVDIQARQDAVLTLFAIR 126
Query: 125 LPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGKLER-GQLL 182
LP +QRRRT DELNMR+ + E DL+ AEV+ + DGS+ L R K+G+L + G +
Sbjct: 127 LPGAVQRRRTREDELNMRAFYAETDLIAAEVQEIKADGSIMLHTRLEDKFGRLSQFGVFV 186
Query: 183 TVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK--MVVDQG-SNSEQLIA 239
+V P L++R + F L + +++G NGYIWI + E D+ V D+ S L+
Sbjct: 187 SVPPGLIRRTGRAFASLGYPHLWVVLGVNGYIWIYWNPEETDRAGAVADEAEPTSTSLLT 246
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVI 286
D ++ CR NA+ VLS L N+++E I
Sbjct: 247 TGDAEAL------------------CRARNAVLVLSMLSLNVSIESI 275
>gi|325187003|emb|CCA21547.1| exonuclease putative [Albugo laibachii Nc14]
Length = 300
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
+ V G+ I L+GHGT + EL A+V GVVE++N+LI V + +RY E GD
Sbjct: 34 SGVVLPGEVINSASGAFLRGHGTYFENQELIASVAGVVEKVNQLISVWPIASRYFGEVGD 93
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
IV+GRV EV K WK+++N Q A+L+LS++ LP G QRRRT D+L MR+ F ENDL+
Sbjct: 94 IVVGRVAEVGNKCWKIDVNSQQHALLLLSAVYLPGGAQRRRTYEDQLQMRNFFQENDLIS 153
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-EEYGIDLIIGCN 211
AEV+ + DG++ L R+ +YGKLE GQ + V P LVKR KQH L E+ +D+IIG N
Sbjct: 154 AEVQEVRYDGTVTLHTRSLRYGKLENGQFVCVSPALVKRMKQHMITLGEDLNVDVIIGAN 213
Query: 212 GYIWI 216
GY+WI
Sbjct: 214 GYLWI 218
>gi|290984077|ref|XP_002674754.1| predicted protein [Naegleria gruberi]
gi|284088346|gb|EFC42010.1| predicted protein [Naegleria gruberi]
Length = 373
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 174/313 (55%), Gaps = 34/313 (10%)
Query: 36 VTVGDTIPVYEDGILKGHGT-SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIV 94
VT G+ I +L GHGT ++K +L ++VCGVVE++NKLI VR +RARY E GD++
Sbjct: 54 VTPGEMIVENGSNVLCGHGTYRNEKNQLISSVCGVVEQVNKLISVRPVRARYHAEVGDVI 113
Query: 95 IGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAE 154
+GR+ ++ K+WK+++ QDA+L L+S+N+P G QRR+T D+LNMRSI+ E+DL+ AE
Sbjct: 114 VGRISKLAGKKWKVDVQARQDAMLDLNSVNIPGG-QRRKTYEDQLNMRSIYQEDDLITAE 172
Query: 155 VRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYI 214
V + G SLQLQ R+ +YGKL G ++ V P LVKR QHF H+ +G+ +I+G NGY+
Sbjct: 173 VHRTDG-SSLQLQTRSSRYGKLVNGIMIRVHPSLVKRCTQHF-HIFPFGVRVILGKNGYL 230
Query: 215 WIGEHVEA------------------RDKMVVDQGSNSE--QLIAKCDKNSMDLDEQDGT 254
WI ++ D + +G E + I+K + E +
Sbjct: 231 WISSSGKSDGDGMDTSSDSKKSSTNLDDLLAAAEGDEEEVTRPISKLSTKPGNPFESNSF 290
Query: 255 CTPREA--------RQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGS 306
E R+ ICR NAI L I E IL+ +S+ + + +ML
Sbjct: 291 IASGETIDQISIKEREAICRTRNAIMALQYQFLPIYPETILDV--YESSIQIPVKEMLSR 348
Query: 307 EFYVLVAESEAER 319
+ L+ ++ R
Sbjct: 349 DKIPLITQNSIVR 361
>gi|328768877|gb|EGF78922.1| hypothetical protein BATDEDRAFT_35582 [Batrachochytrium
dendrobatidis JAM81]
Length = 282
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 155/269 (57%), Gaps = 21/269 (7%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
VT G+ I + ++GHGT ++ L A+V GVVER+NKLI V+ L+ Y E GD+V+
Sbjct: 13 VTPGEII-TKDSAFMRGHGTFTEEQALVASVAGVVERVNKLISVKPLK--YNGEIGDVVV 69
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ E+ PKRWK++I Q A+L+LSS+NLP G+ RR++ DEL MR+ F E DL+ AEV
Sbjct: 70 GRISELGPKRWKVDIKGRQHAVLLLSSINLPGGVLRRKSESDELQMRTFFAEGDLLSAEV 129
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
++ GDG+ LQ R KYGKL G L+ V +KR K HF L G+D+++G NGY+W
Sbjct: 130 QAFFGDGAASLQTRGIKYGKLRNGSLVIVPSAQIKRSKSHFITL-PCGVDVVLGVNGYVW 188
Query: 216 IGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLS 275
+ +H+ V + +N + + S+ E R+ I R+ N I +L
Sbjct: 189 VSKHIP-----VDPEWANQPDGLYTNENESISDAE----------REAIARVCNVITLLG 233
Query: 276 RLGFNITVEVILETVNLSNSLNLDIHDML 304
R + I+ + SL+ + D+L
Sbjct: 234 RQNCEVHESSIVYAFD--ASLDYPVKDLL 260
>gi|156553719|ref|XP_001600703.1| PREDICTED: exosome complex component RRP4-like [Nasonia
vitripennis]
Length = 302
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 168/302 (55%), Gaps = 25/302 (8%)
Query: 24 ESLSSKSNPNSCV-TVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIYVRA 81
++L + +P + + G+ I D L+GHGT D++ L A+V G +ER+NKLI V+
Sbjct: 23 QNLPTHQDPQVFLYSPGEEISTQPD-FLRGHGTYVDEQEVLRASVAGRLERVNKLISVKP 81
Query: 82 LRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNM 141
+ RY+ E GD+VIGR+ EV KRWK++ N DA L+LSS+NLP G RRR+ DE M
Sbjct: 82 YKTRYQGEIGDVVIGRITEVQQKRWKVDCNAKLDAALLLSSVNLPGGELRRRSVEDEQAM 141
Query: 142 RSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEE 201
R E DL+CAEV+S DGSL L R KYGKL +G +L V P L+KR+K HFH+L
Sbjct: 142 RRYLQEGDLICAEVQSIFADGSLSLHTRVLKYGKLSQGIMLKVSPALIKRQKTHFHNLTN 201
Query: 202 YGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREAR 261
G L++G NGY WIG +V D+ +G + QD + +E R
Sbjct: 202 -GACLVLGNNGYAWIGANVADTDR---SEGGFT----------------QDLSRVSQEDR 241
Query: 262 QNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRS 321
+ R+ N I L++ +I + T S+ IH+ML E + VA +R +
Sbjct: 242 EVCARLRNCILSLAK--SHILLSDTSVTYAYEESMKYSIHEMLIPEVQLDVALLTHQRLT 299
Query: 322 LS 323
+S
Sbjct: 300 IS 301
>gi|213511156|ref|NP_001134204.1| Exosome complex exonuclease RRP4 [Salmo salar]
gi|209731444|gb|ACI66591.1| Exosome complex exonuclease RRP4 [Salmo salar]
Length = 295
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 123/181 (67%), Gaps = 2/181 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + G ++GHGT + +L A+V G VER+NKLI VR LR R+ E GD+V+
Sbjct: 29 VVPGDVI-TSDTGFMRGHGTYMDEEKLTASVAGEVERVNKLICVRPLRTRFNGEVGDVVV 87
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LSS+NLP G RRR+A DEL MR E DL+ AEV
Sbjct: 88 GRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMRDYLQEGDLISAEV 147
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG+L L R+ KYGKL +G L+ + P L+KR+K HFH+L G +I+G NG++W
Sbjct: 148 QSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNL-PCGASIILGNNGFVW 206
Query: 216 I 216
+
Sbjct: 207 L 207
>gi|194755110|ref|XP_001959835.1| GF11836 [Drosophila ananassae]
gi|190621133|gb|EDV36657.1| GF11836 [Drosophila ananassae]
Length = 298
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 150/253 (59%), Gaps = 24/253 (9%)
Query: 11 TQKVRLEKALERLESLSSKSNPNS---CVTVGDTIPVYEDGILKGHGTSDQKGELAATVC 67
T +E AL+R++ ++P + T G+ + + E G ++GHGT + + A+V
Sbjct: 2 TANATIELALDRVDWRDLAAHPENLPRVYTPGEVL-MPEAGFMRGHGTFVEDETIKASVA 60
Query: 68 GVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPD 127
GV+E++NKLI VR L++RY E GD+V+ RVIEV KRW+++ N D+IL+LSS+NLP
Sbjct: 61 GVIEKVNKLISVRPLKSRYVGEIGDVVVARVIEVQQKRWRVDTNSRLDSILLLSSVNLPG 120
Query: 128 GIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY 187
G RRR+A DE MR E DL+ AEV++ +G+L L R+ KYGKL +G L+ V P
Sbjct: 121 GELRRRSAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGLLVKVFPA 180
Query: 188 LVKRRKQHFHHLEEYGIDLIIGCNGYIWIG-------------------EHVEARDKMVV 228
LVKRRK HFH+L G +I+G NGYIWI EHV D+ V+
Sbjct: 181 LVKRRKMHFHNL-PCGASVILGNNGYIWIAPTKAQEQDGGEGGFAQNLNEHVPRNDREVI 239
Query: 229 DQGSNSEQLIAKC 241
+ N +AKC
Sbjct: 240 ARLRNCVLALAKC 252
>gi|339717151|ref|NP_001017572.2| exosome complex exonuclease RRP4 [Danio rerio]
Length = 295
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 121/181 (66%), Gaps = 2/181 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + G ++GHGT + L A+V G VER+NKLI V+ L+ RY E GD+V+
Sbjct: 29 VVPGDVI-TSDTGFMRGHGTYMDEDRLTASVAGQVERVNKLICVKPLKTRYNGEVGDVVV 87
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LS++NLP G RRR+ DEL MR E DL+ AEV
Sbjct: 88 GRITEVQQKRWKVETNSRLDSVLLLSAVNLPGGELRRRSTQDELAMRDYLQEGDLISAEV 147
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG+L L R+ KYGKL +G L+ V P LVKR+K HFH+L G LI+G NGY+W
Sbjct: 148 QSIFSDGALSLHTRSLKYGKLGQGVLVYVSPSLVKRQKTHFHNL-PCGASLILGNNGYVW 206
Query: 216 I 216
+
Sbjct: 207 L 207
>gi|254571395|ref|XP_002492807.1| 3'-5' exoribonuclease involved in rRNA processing [Komagataella
pastoris GS115]
gi|238032605|emb|CAY70628.1| 3'-5' exoribonuclease involved in rRNA processing [Komagataella
pastoris GS115]
gi|328353185|emb|CCA39583.1| exosome complex component RRP4 [Komagataella pastoris CBS 7435]
Length = 348
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 143/249 (57%), Gaps = 10/249 (4%)
Query: 21 ERLE-SLSSKSNPNSCVTVGDTIPVYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIY 78
E LE SL+ K+N S VT G+ I ED I ++GHGT + ++V G + ++NKL+
Sbjct: 25 EMLEASLAPKNNNQSIVTPGELIT--EDPIWMRGHGTYYLNEKTYSSVAGTISKVNKLLS 82
Query: 79 VRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE 138
V LR RY+PETGD V+GR+ EV PKRWK++I QDA LML S+NLP G+ RR++ DE
Sbjct: 83 VVPLRGRYQPETGDHVVGRITEVGPKRWKVDIGARQDAALMLGSVNLPGGVLRRKSESDE 142
Query: 139 LNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHH 198
L MR+ E DL+ AEV+S DGS L R+ KYGKL G + V L+ R+K H H
Sbjct: 143 LQMRNFLKEGDLLNAEVQSIFQDGSASLHTRSLKYGKLRNGYFVKVPSSLIIRQKNHLHE 202
Query: 199 LEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR 258
L I +IIG NGYIWI + + K + N+ D + + TP
Sbjct: 203 LPG-SITIIIGVNGYIWISKTLYQHQKSLPSTTGNN-----ALDSTVSSAAAKSNSYTPG 256
Query: 259 EARQNICRI 267
+ +I R+
Sbjct: 257 QGSVSITRL 265
>gi|395506260|ref|XP_003757453.1| PREDICTED: exosome complex component RRP4 isoform 2 [Sarcophilus
harrisii]
Length = 285
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 132/215 (61%), Gaps = 10/215 (4%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A +RL + V GDTI + G ++GHGT +L A+V G VER
Sbjct: 4 EIRLPVARQRLPESLDRDTQKHLVVPGDTI-TTDTGFMRGHGTYMGDEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGK V P LVKR+
Sbjct: 123 RSAEDELAMRDFLREGDLISAEVQAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQ 174
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV 227
K HFH L G +I+G NG+IWI E R++ V
Sbjct: 175 KTHFHDL-PCGASVILGNNGFIWIYPTPEQREEEV 208
>gi|443924374|gb|ELU43399.1| exosome complex exonuclease rrp4 [Rhizoctonia solani AG-1 IA]
Length = 332
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 156/268 (58%), Gaps = 30/268 (11%)
Query: 48 GILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA---RYKPETGDIVIGRVIEVVPK 104
++GHGT + ++ A+V G VER+NK + + RY PE GD+V+GR+ E P+
Sbjct: 71 AFMRGHGTFVEDEQVIASVAGTVERVNK-DFCQGSSVDIHRYTPEVGDLVVGRITEASPR 129
Query: 105 -----RWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
RWK+++N QD +LMLSS+NLP G+QRR+ DEL MR+ F E+DL+ AEV+S
Sbjct: 130 SSTAFRWKVDVNSRQDGLLMLSSVNLPGGVQRRKLESDELQMRTFFEESDLLVAEVQSLF 189
Query: 160 GDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEH 219
DGS+ L R+ +YGKL GQL+ V LV+R K HF L G+DLI+G NGYIW+ +H
Sbjct: 190 SDGSISLHTRSLRYGKLRNGQLVQVPNGLVRRLKSHFFSL-PCGVDLILGLNGYIWVSKH 248
Query: 220 VEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGF 279
V+ ++ V ++G ++E + T T R I R+ N IRVL+R
Sbjct: 249 VKEINQ-VGEEGFDAEPI---------------DTTTSRA----IIRVCNIIRVLARHHV 288
Query: 280 NITVEVILETVNLSNSLNLDIHDMLGSE 307
+T +I + N++I D+L E
Sbjct: 289 PLTDHLIEQAYEWVIDQNIEIVDILNEE 316
>gi|53136852|emb|CAG32755.1| hypothetical protein RCJMB04_35a17 [Gallus gallus]
Length = 254
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 119/176 (67%), Gaps = 1/176 (0%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT + +L A+V G VER+NKL+ V L+ RY E GDIV+GR+ EV KRWK+E
Sbjct: 1 MRGHGTYVDEEKLVASVAGAVERVNKLVCVTPLKTRYNGEVGDIVVGRITEVQQKRWKVE 60
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV+S DG++ L R
Sbjct: 61 TNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRDYLQEGDLISAEVQSVFSDGAVSLHTR 120
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
+ KYGKL +G L+ V P LVKR+K HFH L G +I+G NG+IWI E +D+
Sbjct: 121 SLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEQKDE 175
>gi|403365220|gb|EJY82389.1| Rrp4-PA [Oxytricha trifallax]
Length = 309
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 156/274 (56%), Gaps = 27/274 (9%)
Query: 35 CVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIV 94
V GD + ++G + GHGT +Q G++ A++ G+V RI+K+I VR L+ +KP+ GD++
Sbjct: 17 IVVPGDYV---DEGFIAGHGTYEQDGKIYASLAGIVHRIDKVICVRPLKTSFKPDIGDVI 73
Query: 95 IGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAE 154
IGR++ V KRW ++IN Q A+L L+++NLP G+QRRR+ D++ MRS F END++ E
Sbjct: 74 IGRIVSVENKRWAVDINSYQHAVLNLTNINLPGGLQRRRSEEDKMQMRSFFKENDIISGE 133
Query: 155 VRS-SQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQH---FHHLEEYGIDLIIGC 210
V+ S DG + +Q RN KYGKL G ++ VD ++R K H F + I +IIG
Sbjct: 134 VQGISTHDGKINMQTRNLKYGKLMNGFMVKVDHNYIRRMKSHILEFFAEQWQPIGVIIGT 193
Query: 211 NGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANA 270
NGY+WI DK Q SN Q +Q T +E R + + N
Sbjct: 194 NGYVWI----YLPDK----QASNESQA------------QQLRTNITKEIRLQMSIVRNT 233
Query: 271 IRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
I +L ++ I + I + ++ LN+D DML
Sbjct: 234 IVILEKIQLPIFKDTIQKVLDTQKLLNVDPKDML 267
>gi|91078208|ref|XP_968880.1| PREDICTED: similar to AGAP011211-PA [Tribolium castaneum]
gi|270002359|gb|EEZ98806.1| hypothetical protein TcasGA2_TC001377 [Tribolium castaneum]
Length = 296
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 144/236 (61%), Gaps = 3/236 (1%)
Query: 12 QKVRLEKALERL-ESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVV 70
QK+ + A R+ S++ T G I ++ ++GHGT +++G L ++V GV
Sbjct: 3 QKIHIRLAAHRINPSIAVNRRVPKIFTPGQVI-TEQNEFMRGHGTYEEEGFLKSSVAGVK 61
Query: 71 ERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQ 130
E++N LI +R L++RY E GD+V+GRV EV KRWK++ N D++L+LSS+NLP G
Sbjct: 62 EQVNNLISIRPLKSRYNGEVGDVVVGRVTEVQQKRWKVDTNSRLDSVLLLSSVNLPGGEL 121
Query: 131 RRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVK 190
RRR+A DE MR E DL+ AEV+S DGSL L R+ KYGKL +G L+ V P L+K
Sbjct: 122 RRRSAEDEHMMRQYLQEGDLISAEVQSVYSDGSLSLHTRSLKYGKLSQGILVKVFPSLIK 181
Query: 191 RRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSM 246
R K HFH+ G +I+G NG+IWI V + N EQ++++ ++ ++
Sbjct: 182 RSKTHFHNF-YVGASIILGNNGFIWIYPTVSNAEDNAGGFVQNLEQVVSRPERETI 236
>gi|223648204|gb|ACN10860.1| Exosome complex exonuclease RRP4 [Salmo salar]
Length = 295
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 123/181 (67%), Gaps = 2/181 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + G ++GHGT + +L A+V G VER+NKLI VR L+ R+ E GD+V+
Sbjct: 29 VVPGDVI-TSDTGFMRGHGTYMDEEKLTASVAGEVERVNKLICVRPLKTRFNGEVGDVVV 87
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LSS+NLP G RRR+A DEL MR E DL+ AEV
Sbjct: 88 GRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMRDYLQEGDLISAEV 147
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG+L L R+ KYGKL +G L+ + P L+KR+K HFH+L G +I+G NG++W
Sbjct: 148 QSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNL-PCGASIILGNNGFVW 206
Query: 216 I 216
+
Sbjct: 207 L 207
>gi|224587324|gb|ACN58640.1| Exosome complex exonuclease RRP4 [Salmo salar]
Length = 290
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 123/181 (67%), Gaps = 2/181 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + G ++GHGT + +L A+V G VER+NKLI VR L+ R+ E GD+V+
Sbjct: 24 VVPGDVI-TSDTGFMRGHGTYMDEEKLTASVAGEVERVNKLICVRPLKTRFNGEVGDVVV 82
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LSS+NLP G RRR+A DEL MR E DL+ AEV
Sbjct: 83 GRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMRDYLQEGDLISAEV 142
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG+L L R+ KYGKL +G L+ + P L+KR+K HFH+L G +I+G NG++W
Sbjct: 143 QSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNL-PCGASIILGNNGFVW 201
Query: 216 I 216
+
Sbjct: 202 L 202
>gi|405960495|gb|EKC26416.1| Exosome complex exonuclease RRP4 [Crassostrea gigas]
Length = 292
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 168/312 (53%), Gaps = 34/312 (10%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGE-LAATVCGVVER 72
+R+ A + ++ S + VT GD I + G ++GHGT + + + L A+V GVVER
Sbjct: 3 IRVSAAAKDRDTRSHVEEIENLVTPGDII-TSDSGFMRGHGTYNSEDDRLLASVAGVVER 61
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+ L+ RY E GD+VIGR+IEV +RWK+E + D+ L+LSS+NLP G RR
Sbjct: 62 VNKLICVKPLKTRYNGEIGDVVIGRIIEVQQRRWKVETHAKLDSSLLLSSVNLPGGELRR 121
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+ DE MR E DL+ AEV+S DGSL L R+ KYGKL +G L+ V P L+KRR
Sbjct: 122 RSEEDEKMMREYLKEGDLISAEVQSVFADGSLSLHTRSLKYGKLGQGTLVQVSPSLIKRR 181
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQD 252
K HFHHL G +I+G NGY+WI C + ++D+
Sbjct: 182 KTHFHHL-PCGATIILGNNGYVWI------------------------CPTETEEMDQTG 216
Query: 253 G-----TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSE 307
G R R+ + R+ N +++L+ + +L T SLN I D+L E
Sbjct: 217 GYELNWKPVQRSDREVVARLRNCVQLLAAQKMQLYDTSVLYT--YEASLNFKIKDILKPE 274
Query: 308 FYVLVAESEAER 319
+ + E R
Sbjct: 275 IGLEILEQTQHR 286
>gi|195489207|ref|XP_002092639.1| GE11554 [Drosophila yakuba]
gi|194178740|gb|EDW92351.1| GE11554 [Drosophila yakuba]
Length = 298
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 149/247 (60%), Gaps = 22/247 (8%)
Query: 16 LEKALERLE--SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+E AL+R++ L+++++ V + + E G ++GHGT + + A+V GV++++
Sbjct: 7 IELALDRVDWRDLAAQTDHQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKASVAGVIQKV 66
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI VR L++RY E GD+V+ RV EV KRW+++ N D+IL+LSS+NLP G RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DE MR E DL+ AEV++ +G+L L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIG-------------------EHVEARDKMVVDQGSNS 234
HFH+L G +I+G NGYIWI EHV D+ V+ + NS
Sbjct: 187 MHFHNL-PCGASVILGNNGYIWISPTKGQEQEGGEGGFAQNLNEHVPRADREVIARLRNS 245
Query: 235 EQLIAKC 241
+AKC
Sbjct: 246 ILALAKC 252
>gi|125809363|ref|XP_001361091.1| GA17783 [Drosophila pseudoobscura pseudoobscura]
gi|195154659|ref|XP_002018239.1| GL17601 [Drosophila persimilis]
gi|54636264|gb|EAL25667.1| GA17783 [Drosophila pseudoobscura pseudoobscura]
gi|194114035|gb|EDW36078.1| GL17601 [Drosophila persimilis]
Length = 298
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 172/294 (58%), Gaps = 28/294 (9%)
Query: 16 LEKALERLE--SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+E AL+R++ +L+ + + V + + E G ++GHGT + + A+V GV+E++
Sbjct: 7 IELALDRVDWCALAERQDVLPRVYTPGEVVMPEAGFMRGHGTFVEDENIKASVAGVIEKV 66
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI VR L++RY E GD+V+ RVIEV KRW+++ N D+IL+LSS+NLP G RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVIEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DE MR E DL+ AEV++ +G+L L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGVLVKVFPALVKRRK 186
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG 253
HFH+L G +I+G NGYIWI +++D+ +G ++ L G
Sbjct: 187 MHFHNL-PCGASVILGNNGYIWISPP-KSQDQE-GGEGGFAQNL---------------G 228
Query: 254 TCTPREARQNICRIANAIRVLSR---LGFNITVEVILETVNLSNSLNLDIHDML 304
PR R+ I R+ N I L++ + ++ +++ + SL + H++L
Sbjct: 229 EAVPRNEREVIARLRNCILALAKCKLMLYDTSIQYAYD-----ESLKYEAHELL 277
>gi|194885394|ref|XP_001976429.1| GG20018 [Drosophila erecta]
gi|190659616|gb|EDV56829.1| GG20018 [Drosophila erecta]
Length = 298
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 149/247 (60%), Gaps = 22/247 (8%)
Query: 16 LEKALERLE--SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+E AL+R++ L+++++ V + + E G ++GHGT + + A+V GV++++
Sbjct: 7 IELALDRVDWRDLAAQTDHQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKASVAGVIQKV 66
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI VR L++RY E GD+V+ RV EV KRW+++ N D+IL+LSS+NLP G RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DE MR E DL+ AEV++ +G+L L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGTLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIG-------------------EHVEARDKMVVDQGSNS 234
HFH+L G +I+G NGYIWI EHV D+ V+ + NS
Sbjct: 187 MHFHNL-PCGASVILGNNGYIWISPTKGQEQEGGEGGFAQNLNEHVPRGDREVIARLRNS 245
Query: 235 EQLIAKC 241
+AKC
Sbjct: 246 ILALAKC 252
>gi|391334155|ref|XP_003741473.1| PREDICTED: exosome complex component RRP4-like [Metaseiulus
occidentalis]
Length = 297
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 167/308 (54%), Gaps = 34/308 (11%)
Query: 14 VRLEKALERLESLSSKSN-----PNSCVTVGDTIPVYEDGILKGHGT--SDQKGELAATV 66
VRL + R +SL+ +S V+ G TI + G ++GHGT D+ G L+A V
Sbjct: 7 VRLFSSRSRSKSLADESEFMGTRAKIVVSPGTTITT-DGGFMRGHGTYLEDENGLLSA-V 64
Query: 67 CGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLP 126
GVVE++NKLI VR L+ RY PE GD+V+GR+++V K WK+++ A L L S+NLP
Sbjct: 65 AGVVEKVNKLITVRPLKTRYNPEVGDVVVGRIVQVCQKLWKVDVGGRLYAALHLHSVNLP 124
Query: 127 DGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDP 186
G RR++ DEL M + DLV AEV++ DG++ L RN KYGKL +G L+ V P
Sbjct: 125 GGELRRKSIEDELLMSQYLIDGDLVSAEVQNVGVDGAVSLHTRNLKYGKLGQGSLVQVSP 184
Query: 187 YLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSM 246
LVKR K HFH+L G+ L+IG NG++WI EA + S+ Q + + D ++
Sbjct: 185 SLVKRCKTHFHNLPN-GVHLVIGLNGFLWITHEGEA-------ESSHFAQNLERVDYHT- 235
Query: 247 DLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGS 306
R++ICR N I LSR + IL +S + I +L
Sbjct: 236 --------------RESICRTRNVIISLSRYNIMLYDTTILYAYEIST--DYSIAQLLKP 279
Query: 307 EFYVLVAE 314
E + VA
Sbjct: 280 EIQMEVAH 287
>gi|170065837|ref|XP_001868042.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
gi|167862584|gb|EDS25967.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
Length = 294
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 158/282 (56%), Gaps = 23/282 (8%)
Query: 26 LSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRAR 85
LS SNP T G+ I + G ++GHGT + ++ ++V GV+ ++NKLI V+AL+ R
Sbjct: 19 LSGDSNPR-LFTPGEVI-TSQQGFMRGHGTYMEDEDIKSSVAGVMVQVNKLITVKALKGR 76
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y E GD+V+ RV +V KRWK++ N D+IL+LSS+NLP G RRR DE MR
Sbjct: 77 YVGEIGDVVVARVTDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRRGVEDEQQMRKYL 136
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID 205
E DL+ AEV++ DG L L R+ KYGKL +G L+ V P L+KRRK HFH+L G
Sbjct: 137 QEGDLISAEVQNVHSDGVLSLHTRSLKYGKLGQGILVKVFPSLIKRRKTHFHNL-PCGAS 195
Query: 206 LIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNIC 265
+I+G NG+IWI V + D G ++ +LDE ++ R+ I
Sbjct: 196 IILGNNGFIWISPVVNTEGE---DGGGFTQ-----------NLDE----AVSKQDREVIS 237
Query: 266 RIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSE 307
R+ N+I L+ + IL SL D+H++L E
Sbjct: 238 RLRNSILALAHCKMLLYDTSILYA--YEESLKYDVHELLHQE 277
>gi|432885912|ref|XP_004074818.1| PREDICTED: exosome complex component RRP4-like [Oryzias latipes]
Length = 293
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 127/192 (66%), Gaps = 1/192 (0%)
Query: 25 SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA 84
SLS+ + + V I + G ++GHGT + +L A+V G V+R++KLI VR L+
Sbjct: 15 SLSASAFDRKDLVVPGDIITSDTGFMRGHGTYVDEEKLTASVAGEVQRVDKLICVRPLKT 74
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
R+ E GD+V+GR+ EV KRWK+E N D++L+LSS+NLP G RRR+A DEL MR
Sbjct: 75 RFNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMREY 134
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGI 204
E DL+ AEV+S DG+L L R+ KYGKL +G L+ + P L+KR+K HFH+L G
Sbjct: 135 LQEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGVLVQISPSLIKRQKSHFHNL-PCGA 193
Query: 205 DLIIGCNGYIWI 216
+I+G NG++W+
Sbjct: 194 SVILGNNGFVWL 205
>gi|348570400|ref|XP_003470985.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP4-like
[Cavia porcellus]
Length = 303
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 120/175 (68%), Gaps = 1/175 (0%)
Query: 51 KGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEI 110
+GHGT + +L A+V G VER+NKLI V+AL+ RY E GDIV+GR+ EV KRWK++
Sbjct: 51 RGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVDT 110
Query: 111 NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN 170
N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV++ DG++ L R+
Sbjct: 111 NSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRS 170
Query: 171 QKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
+YGKL +G L+ V P LVKR+K HFH L G +I+G NG+IWI E +D+
Sbjct: 171 LRYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEHKDE 224
>gi|170045026|ref|XP_001850125.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
gi|167868077|gb|EDS31460.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
Length = 296
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 157/279 (56%), Gaps = 23/279 (8%)
Query: 26 LSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRAR 85
LS SNP T G+ I + G ++GHGT + ++ ++V GV+ ++NKLI V+AL+ R
Sbjct: 21 LSGDSNPR-LFTPGEVI-TSQQGFMRGHGTYMEDEDIKSSVAGVMVQVNKLITVKALKGR 78
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y E GD+V+ RV +V KRWK++ N D+IL+LSS+NLP G RRR DE MR
Sbjct: 79 YVGEIGDVVVARVTDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRRGVEDEQQMRKYL 138
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID 205
E DL+ AEV++ DG L L R+ KYGKL +G L+ V P L+KRRK HFH+L G
Sbjct: 139 QEGDLISAEVQNVHSDGVLSLHTRSLKYGKLGQGILVKVFPSLIKRRKTHFHNL-PCGAS 197
Query: 206 LIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNIC 265
+I+G NG+IWI V A + D G ++ +LDE ++ R+ I
Sbjct: 198 IILGNNGFIWISPVVNAEGE---DGGGFTQ-----------NLDE----AVSKQDREVIS 239
Query: 266 RIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
R+ N I L+ + IL SL D+H++L
Sbjct: 240 RLRNCILALAHCKMLLYDTSILYAYE--ESLKYDVHELL 276
>gi|229366946|gb|ACQ58453.1| Exosome complex exonuclease RRP4 [Anoplopoma fimbria]
Length = 293
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 125/190 (65%), Gaps = 2/190 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + G ++GHGT +L A+V G V+R++KLI VR L+ R+ E GD+V+
Sbjct: 27 VVPGDVI-TSDTGFMRGHGTYVDDDKLTASVAGEVQRVDKLICVRPLKTRFNGEVGDVVV 85
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GRV EV KRWK+E N D++L+LSS+NLP G RRR+A DEL MR E DL+ AEV
Sbjct: 86 GRVTEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMREYLQEGDLISAEV 145
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG+L L R+ KYGKL +G L+ + P L+KR+K HFH+L G +I+G NG++W
Sbjct: 146 QSVFSDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNL-PCGASIILGNNGFVW 204
Query: 216 IGEHVEARDK 225
+ E D+
Sbjct: 205 LYPTPEQLDE 214
>gi|332372568|gb|AEE61426.1| unknown [Dendroctonus ponderosae]
Length = 303
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 175/313 (55%), Gaps = 34/313 (10%)
Query: 8 FNQTQKVRLEKALERLESLSSKSNPNSCVTVGD-TIPVYEDGILKGHGTSDQKGELAATV 66
+Q +R A R+ L++ + T G+ I + ++GHGT ++ G+L A+V
Sbjct: 1 MSQKIHIRSASASNRVRPLAATQKYHRIFTPGEEVIKAAQTHFVRGHGTYEEGGDLKASV 60
Query: 67 CGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLP 126
GV E++NKL+ VR L++RY + G++++GR++EV KRWK++ N D+ L+LSS+NLP
Sbjct: 61 AGVKEQVNKLVSVRPLKSRYNGQVGEVLVGRILEVQQKRWKVDTNSRLDSALLLSSVNLP 120
Query: 127 DGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDP 186
G RRR+A D+ MR E DL+ AEV+S DG+L L R+ KYGKL +G L+ V P
Sbjct: 121 GGELRRRSAEDQHMMREYLQEGDLISAEVQSVFTDGTLSLHTRSLKYGKLGQGILIKVFP 180
Query: 187 YLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGS---NSEQLIAKCDK 243
LVK+ K HF L +G+ LI+G NGYIWI + + D+G N E++I
Sbjct: 181 SLVKKCKLHFCTL-PFGVSLILGNNGYIWIS---PTSNNVEGDEGGFIQNLEEVI----- 231
Query: 244 NSMDLDEQDGTCTPREARQNICRIANAIRVLSR---LGFNITVEVILETVNLSNSLNLDI 300
P++ R+ + R+ N+I L++ + F+ ++ E SL +
Sbjct: 232 -------------PKDIREAMARVRNSILALAQNYMMLFDTSIIFAYE-----ESLKYSV 273
Query: 301 HDMLGSEFYVLVA 313
H++L E V +A
Sbjct: 274 HELLLPETMVDLA 286
>gi|410979298|ref|XP_003996022.1| PREDICTED: exosome complex component RRP4 isoform 2 [Felis catus]
Length = 285
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 127/204 (62%), Gaps = 10/204 (4%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESLDRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGK V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQ 174
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 175 KTHFHDL-PCGASVILGTNGFIWI 197
>gi|164663335|ref|XP_001732789.1| hypothetical protein MGL_0564 [Malassezia globosa CBS 7966]
gi|159106692|gb|EDP45575.1| hypothetical protein MGL_0564 [Malassezia globosa CBS 7966]
Length = 366
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 111/157 (70%), Gaps = 3/157 (1%)
Query: 68 GVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPD 127
G+VER+NKLI VR +R RY+ E GD+V+GR++EV +RWK++I T DA L LSS+NLP
Sbjct: 96 GIVERVNKLISVRPIRTRYRAEVGDLVVGRIMEVQSRRWKVDIGTTTDASLQLSSVNLPG 155
Query: 128 GIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY 187
G+QR++ DEL MR F E DLV AEV+S DGS+ L R+ +YGKL G L + P
Sbjct: 156 GVQRKKLESDELQMRMFFQEGDLVVAEVQSVFQDGSVGLHTRSLRYGKLRNGALAVIPPV 215
Query: 188 LVKRRKQHF---HHLEEYGIDLIIGCNGYIWIGEHVE 221
LV+R K HF L E+GIDL++G NGY+W+ +H++
Sbjct: 216 LVRRHKSHFITLDKLPEHGIDLLLGLNGYVWVSKHID 252
>gi|67467767|ref|XP_649967.1| exosome complex exonuclease RRP4 [Entamoeba histolytica HM-1:IMSS]
gi|56466501|gb|EAL44579.1| exosome complex exonuclease RRP4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449707281|gb|EMD46970.1| exosome complex exonuclease RRP4, putative [Entamoeba histolytica
KU27]
Length = 263
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 121/186 (65%), Gaps = 2/186 (1%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
N N+ VT GD I YE+G + G+G + E + V G VERINKL+ V +RARY
Sbjct: 7 NDNNHVTPGDEI-FYEEGCIPGNGILVEGSEFISCVHGTVERINKLVCVNPIRARYSGNV 65
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+V+GR++ V WK++IN +L +SS+NLPDGIQRRRT +D LN+++ F N+L
Sbjct: 66 GDVVVGRIVSVGVGFWKVDINGKNTGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNEL 125
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGC 210
+CAEV+S G +QL RN++YGKL G L+ V P L+KR K H L + GI I G
Sbjct: 126 ICAEVQSMNGQSCIQLHTRNERYGKLNEGILIQVHPSLIKRCKSHI-TLFKNGIKFICGM 184
Query: 211 NGYIWI 216
NGYI+I
Sbjct: 185 NGYIFI 190
>gi|24762324|ref|NP_611807.1| Rrp4 [Drosophila melanogaster]
gi|7291605|gb|AAF47028.1| Rrp4 [Drosophila melanogaster]
Length = 298
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 148/247 (59%), Gaps = 22/247 (8%)
Query: 16 LEKALERLE--SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
++ AL+R++ L++++ V + + E G ++GHGT + + ++V GV++++
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI VR L++RY E GD+V+ RV EV KRW+++ N D+IL+LSS+NLP G RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DE MR E DL+ AEV++ +GSL L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIG-------------------EHVEARDKMVVDQGSNS 234
HFH+L G +I+G NGYIWI EHV D+ V+ + NS
Sbjct: 187 MHFHNL-PCGASVILGNNGYIWISPTKGQEEEGGEGGFAQNLNEHVPRADREVIARLRNS 245
Query: 235 EQLIAKC 241
+AKC
Sbjct: 246 ILALAKC 252
>gi|47223594|emb|CAF99203.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1465
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 125/190 (65%), Gaps = 2/190 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + G ++GHGT + L A+V G VER++KLI V+ L+ R+ E GD+V+
Sbjct: 27 VVPGDII-TSDTGFMRGHGTYVDEDNLTASVAGEVERVDKLICVKPLKTRFNGEVGDVVV 85
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LS++NLP G RRR+A DEL MR E DL+ AEV
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSAVNLPGGELRRRSAEDELTMREYLHEGDLISAEV 145
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG+L L R+ KYGKL +G L+ V P L+KR+K HFH+L G +I+ NG++W
Sbjct: 146 QSVFSDGALSLHTRSLKYGKLGQGVLVQVSPSLIKRQKTHFHNL-PCGASVILANNGFVW 204
Query: 216 IGEHVEARDK 225
+ E +D+
Sbjct: 205 LYPTPEQQDE 214
>gi|407042623|gb|EKE41442.1| exosome complex exonuclease RRP4, putative [Entamoeba nuttalli P19]
Length = 263
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 121/186 (65%), Gaps = 2/186 (1%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
N N+ VT GD I YE+G + G+G + E + V G VERINKL+ V +RARY
Sbjct: 7 NDNNHVTPGDEI-FYEEGCIPGNGILVEGNEFISCVHGTVERINKLVCVNPIRARYSGNV 65
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+V+GR++ V WK++IN +L +SS+NLPDGIQRRRT +D LN+++ F N+L
Sbjct: 66 GDVVVGRIVSVGVGFWKVDINGKNTGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNEL 125
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGC 210
+CAEV+S G +QL RN++YGKL G L+ V P L+KR K H L + GI I G
Sbjct: 126 ICAEVQSMNGQSCIQLHTRNERYGKLNEGILIQVHPSLIKRCKSHI-TLFKNGIKFICGM 184
Query: 211 NGYIWI 216
NGYI+I
Sbjct: 185 NGYIFI 190
>gi|21428348|gb|AAM49834.1| GM02257p [Drosophila melanogaster]
Length = 298
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 148/247 (59%), Gaps = 22/247 (8%)
Query: 16 LEKALERLE--SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
++ AL+R++ L++++ V + + E G ++GHGT + + ++V GV++++
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI VR L++RY E GD+V+ RV EV KRW+++ N D+IL+LSS+NLP G RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DE MR E DL+ AEV++ +GSL L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIG-------------------EHVEARDKMVVDQGSNS 234
HFH+L G +I+G NGYIWI EHV D+ V+ + NS
Sbjct: 187 MHFHNL-PCGASVILGNNGYIWISPTKGQEEEGGEGGFAQNLNEHVPRADREVIARLRNS 245
Query: 235 EQLIAKC 241
+AKC
Sbjct: 246 ILALAKC 252
>gi|326436073|gb|EGD81643.1| Rrp4-PA [Salpingoeca sp. ATCC 50818]
Length = 301
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 155/280 (55%), Gaps = 26/280 (9%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + G ++GHGT G L A+V GVVER+NK+I VR +R RY E GD+V+
Sbjct: 37 VCPGDVI-TEDQGYMRGHGTFIHDGRLLASVAGVVERVNKVISVRPVRTRYVGEIGDVVV 95
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+++V +RW ++ ++L LSS+NLP G+ RR++A DEL MR + E DL+ AEV
Sbjct: 96 GRIMQVGQRRWLVDTQSRLSSVLKLSSVNLPGGVLRRKSASDELTMRQVLAEGDLISAEV 155
Query: 156 RS-SQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYI 214
++ Q DG+L L R+ +YG+L G + V LV+R K HFH L G+ +++G NGYI
Sbjct: 156 QAIFQEDGTLSLHTRSLRYGRLGPGMFMRVPSVLVRRSKNHFHTL-PCGVAVVLGNNGYI 214
Query: 215 WIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVL 274
WIG A ++++ E D E R+ + R+ NAI L
Sbjct: 215 WIG---------------------ASMEEDTTQAREHDQHIITEETRRRMARVRNAISAL 253
Query: 275 SRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAE 314
+ +I I+ T + +S +L+ +ML E + +
Sbjct: 254 AHRMLSIFDTTIIFTYD--DSAHLEEKEMLHPEAIATITQ 291
>gi|407921327|gb|EKG14478.1| hypothetical protein MPH_08327 [Macrophomina phaseolina MS6]
Length = 350
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 157/270 (58%), Gaps = 26/270 (9%)
Query: 35 CVTVGDTI---PVYEDGILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
VT G+T+ P + ++GHGT D E+ +TV G V + NKL+ + LRARY PE
Sbjct: 52 IVTPGETVTDDPQW----MRGHGTYVPDDSTEIISTVAGTVLKTNKLLSITPLRARYIPE 107
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
GD+V+GR++EV +RW+++I+ Q A L LS++NLP GI R+RTAVDELN+R+ FTE D
Sbjct: 108 IGDLVVGRIVEVQSRRWRVDISAPQLAGLPLSAINLPGGILRKRTAVDELNIRTFFTEGD 167
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTV---------DPYLVKRRKQHFHHLE 200
L+ AEV++ GDG+ L R+ KYGKL G L+V + + R+Q F
Sbjct: 168 LLVAEVQTIHGDGAASLHTRSLKYGKLRNGYFLSVAGTGGGGGRQGGVARSRRQVFTLSS 227
Query: 201 EYG--IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR 258
G ID+I+G NGYIWI +HVE + + E+ ++K +S + D + T
Sbjct: 228 TRGGEIDIILGVNGYIWISKHVEPPNAGKDVSITRIEESVSKEVYSSQNDDIEVDT---- 283
Query: 259 EARQNICRIANAIRVLSRLGFNITVEVILE 288
R+ I R+A IR L G + + +++
Sbjct: 284 --RREIARVAGVIRALVESGLRVDEDTVVK 311
>gi|170065835|ref|XP_001868041.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
gi|167862583|gb|EDS25966.1| exosome complex exonuclease RRP4 [Culex quinquefasciatus]
Length = 296
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 156/279 (55%), Gaps = 23/279 (8%)
Query: 26 LSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRAR 85
LS SNP T G+ I + G ++GHGT + ++ ++V GV+ ++NKLI V+AL+ R
Sbjct: 21 LSGDSNPR-LFTPGEVI-TSQQGFMRGHGTYMEDEDIKSSVAGVMVQVNKLITVKALKGR 78
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y E GD+V+ RV +V KRWK++ N D+IL+LSS+NLP G RRR DE MR
Sbjct: 79 YVGEIGDVVVARVTDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRRGVEDEQQMRKYL 138
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID 205
E DL+ AEV++ DG L L R+ KYGKL +G L+ V P L+KRRK HFH+L G
Sbjct: 139 QEGDLISAEVQNVHSDGVLSLHTRSLKYGKLGQGILVKVFPSLIKRRKTHFHNL-PCGAS 197
Query: 206 LIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNIC 265
+I+G NG+IWI V + D G ++ +LDE ++ R+ I
Sbjct: 198 IILGNNGFIWISPVVNTEGE---DGGGFTQ-----------NLDE----AVSKQDREVIS 239
Query: 266 RIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
R+ N I L+ + IL SL D+H++L
Sbjct: 240 RLRNCILALAHCKMLLYDTSILYAYE--ESLKYDVHELL 276
>gi|167389163|ref|XP_001738843.1| rrp4 [Entamoeba dispar SAW760]
gi|165897732|gb|EDR24810.1| rrp4, putative [Entamoeba dispar SAW760]
Length = 263
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 122/186 (65%), Gaps = 2/186 (1%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
N N+ VT GD I YE+G + G+G + E + V G VERINKL+ V +R+RY
Sbjct: 7 NDNNHVTPGDEI-FYEEGCIPGNGIRIEDNEFISCVHGTVERINKLVCVNPIRSRYCGNV 65
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+V+GR++ V WK++IN + +L +SS+NLPDGIQRRRT +D LN+++ F N+L
Sbjct: 66 GDVVVGRIVSVGVGFWKVDINGKNNGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNEL 125
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGC 210
+CAEV+S G +QL RN++YGKL G L+ V P L+KR K H L + GI I G
Sbjct: 126 ICAEVQSMNGQSCIQLHTRNERYGKLNEGILIQVHPSLIKRCKSHI-TLFKNGIKFICGM 184
Query: 211 NGYIWI 216
NGYI+I
Sbjct: 185 NGYIFI 190
>gi|326470398|gb|EGD94407.1| exosome complex exonuclease Rrp4 [Trichophyton tonsurans CBS
112818]
Length = 368
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 154/283 (54%), Gaps = 22/283 (7%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKP 88
++ VT G+ I + ++GHGT + ATV G V + NKL+ V LRARY P
Sbjct: 46 DTIVTPGEII-TDDPQWMRGHGTFTPAVPPTTNIIATVAGTVLKTNKLLSVYPLRARYTP 104
Query: 89 ETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEN 148
E GD+V+GR++EV KRWK++++ A L LS++NLP GI R+RTA DEL +RS F E
Sbjct: 105 EIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNEG 164
Query: 149 DLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY-----------LVKRRKQHFH 197
DLV AEV++ GDG+ L R+ KYGKL G L V +V+ R+Q +
Sbjct: 165 DLVVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVWT 224
Query: 198 HLEEYG--IDLIIGCNGYIWIGEHVEARDKMVVD-QGSNSEQLIAKC-DKNSMDLDEQDG 253
YG ID+I+G NGYIWI +HV RD D GS S+ + D S +
Sbjct: 225 IETAYGGPIDVILGVNGYIWISKHV--RDPSEEDSSGSKSKVSFTRLEDMVSTSMYSSQN 282
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSL 296
P R+ I RIA IRVL G + + +++ S +L
Sbjct: 283 DNIPLATRKEITRIAGCIRVLVEGGVKVDQDTVMKAYEASLAL 325
>gi|327306313|ref|XP_003237848.1| exosome complex exonuclease Rrp4 [Trichophyton rubrum CBS 118892]
gi|326460846|gb|EGD86299.1| exosome complex exonuclease Rrp4 [Trichophyton rubrum CBS 118892]
Length = 368
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 154/283 (54%), Gaps = 22/283 (7%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKP 88
++ VT G+ I + ++GHGT + ATV G V + NKL+ V LRARY P
Sbjct: 46 DTIVTPGEII-TDDPQWMRGHGTFTPAVPATTNIIATVAGTVLKTNKLLSVYPLRARYTP 104
Query: 89 ETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEN 148
E GD+V+GR++EV KRWK++++ A L LS++NLP GI R+RTA DEL +RS F E
Sbjct: 105 EIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNEG 164
Query: 149 DLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY-----------LVKRRKQHFH 197
DL+ AEV++ GDG+ L R+ KYGKL G L V +V+ R+Q +
Sbjct: 165 DLLVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVWT 224
Query: 198 HLEEYG--IDLIIGCNGYIWIGEHVEARDKMVVD-QGSNSEQLIAKC-DKNSMDLDEQDG 253
YG ID+I+G NGYIWI +HV RD D GS S+ + D S +
Sbjct: 225 IETAYGGPIDVILGVNGYIWISKHV--RDPSEEDSSGSKSKVSFTRLEDMVSTSMYSSQN 282
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSL 296
P R+ I RIA IRVL G + E +++ S +L
Sbjct: 283 DNIPLATRKEITRIAGCIRVLVEGGVKVDQETVMKAYEASLAL 325
>gi|326478581|gb|EGE02591.1| exosome complex exonuclease Rrp4 [Trichophyton equinum CBS 127.97]
Length = 368
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 154/283 (54%), Gaps = 22/283 (7%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKP 88
++ VT G+ I + ++GHGT + ATV G V + NKL+ V LRARY P
Sbjct: 46 DTIVTPGEII-TDDPQWMRGHGTFTPAVPPTTNIIATVAGTVLKTNKLLSVYPLRARYTP 104
Query: 89 ETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEN 148
E GD+V+GR++EV KRWK++++ A L LS++NLP GI R+RTA DEL +RS F E
Sbjct: 105 EIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNEG 164
Query: 149 DLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY-----------LVKRRKQHFH 197
DLV AEV++ GDG+ L R+ KYGKL G L V +V+ R+Q +
Sbjct: 165 DLVVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVWT 224
Query: 198 HLEEYG--IDLIIGCNGYIWIGEHVEARDKMVVD-QGSNSEQLIAKC-DKNSMDLDEQDG 253
YG ID+I+G NGYIWI +HV RD D GS S+ + D S +
Sbjct: 225 IETAYGGPIDVILGVNGYIWISKHV--RDPSEEDSSGSKSKVSFTRLEDMVSTSMYSSQN 282
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSL 296
P R+ I RIA IRVL G + + +++ S +L
Sbjct: 283 DNIPLATRKEITRIAGCIRVLVEGGVKVDQDTVMKAYEASLAL 325
>gi|62204282|gb|AAH92739.1| Exosome component 2 [Danio rerio]
gi|182889240|gb|AAI64830.1| Exosc2 protein [Danio rerio]
Length = 254
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT + L A+V G VER+NKLI V+ L+ RY E GD+V+GR+ EV KRWK+E
Sbjct: 1 MRGHGTYMDEDRLTASVAGQVERVNKLICVKPLKTRYNGEVGDVVVGRITEVQQKRWKVE 60
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
N D++L+LS++NLP G RRR+ DEL MR E DL+ AEV+S DG+L L R
Sbjct: 61 TNSRLDSVLLLSAVNLPGGELRRRSTQDELAMRDYLQEGDLISAEVQSIFSDGALSLHTR 120
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
+ KYGKL +G L+ V P LVKR+K HFH+L G LI+G NGY+W+
Sbjct: 121 SLKYGKLGQGVLVYVSPSLVKRQKTHFHNL-PCGASLILGNNGYVWL 166
>gi|297270040|ref|XP_002800005.1| PREDICTED: exosome complex exonuclease RRP4 isoform 2 [Macaca
mulatta]
Length = 285
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 127/204 (62%), Gaps = 10/204 (4%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDT+ + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPAARKPLSERLGRDTKKHLVVPGDTV-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGK V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQ 174
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 175 KTHFHDL-PCGASVILGNNGFIWI 197
>gi|348532843|ref|XP_003453915.1| PREDICTED: exosome complex component RRP4-like [Oreochromis
niloticus]
Length = 293
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 125/190 (65%), Gaps = 2/190 (1%)
Query: 27 SSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARY 86
+S + V GD I + G ++GHGT +L A+V G V+R++KLI VR L+ R+
Sbjct: 18 ASAFDRKDLVVPGDVI-TSDTGFMRGHGTYVDDDKLTASVAGEVQRVDKLICVRPLKTRF 76
Query: 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFT 146
E GD+V+GR+ EV KRWK+E N D++L+LSS+NLP G RRR+A DEL MR
Sbjct: 77 NGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRRRSAEDELTMREYLQ 136
Query: 147 ENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDL 206
E DL+ AEV+S DG+L L R+ KYGKL +G L+ + P L+KR+K HFH+L G +
Sbjct: 137 EGDLISAEVQSVFMDGALSLHTRSLKYGKLGQGVLVQLSPSLIKRQKTHFHNL-PCGASI 195
Query: 207 IIGCNGYIWI 216
I+G NG++W+
Sbjct: 196 ILGNNGFVWL 205
>gi|390458442|ref|XP_003732111.1| PREDICTED: exosome complex component RRP4 [Callithrix jacchus]
Length = 285
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 127/204 (62%), Gaps = 10/204 (4%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGK V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQ 174
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 175 KTHFHDL-PCGASVILGNNGFIWI 197
>gi|195586086|ref|XP_002082809.1| GD25033 [Drosophila simulans]
gi|194194818|gb|EDX08394.1| GD25033 [Drosophila simulans]
Length = 298
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 169/294 (57%), Gaps = 28/294 (9%)
Query: 16 LEKALERLE--SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
++ AL+R++ L++++ V + + E G ++GHGT + + ++V GV++++
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI VR L++RY E GD+V+ RV EV KRW+++ N D+IL+LSS+NLP G RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DE MR E DL+ AEV++ +GSL L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG 253
HFH+L G +I+G NGYIWI + ++ + +L+E
Sbjct: 187 MHFHNL-PCGASVILGNNGYIWISP-------------TKGQEEEGGEGGFAQNLNEH-- 230
Query: 254 TCTPREARQNICRIANAIRVLSR---LGFNITVEVILETVNLSNSLNLDIHDML 304
PR R+ I R+ N+I L++ + ++ +++ E SL + H++L
Sbjct: 231 --VPRGEREVIARLRNSILALAKCKLMIYDTSIQYAYE-----ESLRYEAHELL 277
>gi|289742421|gb|ADD19958.1| exosomal 3'-5' exoribonuclease complex subunit Rrp4 [Glossina
morsitans morsitans]
Length = 298
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 140/218 (64%), Gaps = 5/218 (2%)
Query: 28 SKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYK 87
+++N T G+ + + E G +KGHGT + ++ A+V GV+E++NKLI ++ L++RY
Sbjct: 22 NQTNVPRLYTPGEVV-IAEGGFMKGHGTYAEGEDIKASVAGVIEKVNKLISIKPLKSRYV 80
Query: 88 PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTE 147
E GD+V+ R+I+V KRWK++ N D+IL+LSS+NLP G RRR + DE MR E
Sbjct: 81 GEIGDVVVARIIDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRRVSEDEQTMRKYLQE 140
Query: 148 NDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLI 207
DL+ AEV++ +G+L L R+ +YGKL +G L+ V P LVKRRK HFH+L G ++I
Sbjct: 141 GDLISAEVQNIYEEGTLSLYTRSLRYGKLSQGVLVKVFPSLVKRRKTHFHNL-PCGANII 199
Query: 208 IGCNGYIWIGEHVEARDKMVVDQG--SNSEQLIAKCDK 243
+G NG+IWI D+ D G N ++I K D+
Sbjct: 200 LGNNGFIWIAPATNT-DEDGGDGGFSQNLTEVIPKADR 236
>gi|302498405|ref|XP_003011200.1| hypothetical protein ARB_02480 [Arthroderma benhamiae CBS 112371]
gi|291174749|gb|EFE30560.1| hypothetical protein ARB_02480 [Arthroderma benhamiae CBS 112371]
Length = 368
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 145/266 (54%), Gaps = 21/266 (7%)
Query: 50 LKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
++GHGT + ATV G V + NKL+ V LRARY PE GD+V+GR++EV KR
Sbjct: 62 MRGHGTFTPAVPATTNIIATVAGTVLKTNKLLSVYPLRARYTPEIGDLVVGRIVEVQSKR 121
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK++++ A L LS++NLP GI R+RTA DEL +RS F E DLV AEV++ GDG+
Sbjct: 122 WKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNEGDLVVAEVQTVHGDGAAS 181
Query: 166 LQARNQKYGKLERGQLLTVDPY-----------LVKRRKQHFHHLEEYG--IDLIIGCNG 212
L R+ KYGKL G L V +V+ R+Q + YG ID+I+G NG
Sbjct: 182 LHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVWTIETAYGGPIDVILGVNG 241
Query: 213 YIWIGEHVEARDKMVVD-QGSNSEQLIAKC-DKNSMDLDEQDGTCTPREARQNICRIANA 270
YIWI +HV RD D G S+ + D S + P R+ I RIA
Sbjct: 242 YIWISKHV--RDPSEEDSSGFKSKVSFTRLEDMVSTSMYSSQNDNIPLATRKEITRIAGC 299
Query: 271 IRVLSRLGFNITVEVILETVNLSNSL 296
IRVL G + E +++ S +L
Sbjct: 300 IRVLVEGGVKVDQETVMKAYEASLAL 325
>gi|410904148|ref|XP_003965554.1| PREDICTED: exosome complex component RRP4-like [Takifugu rubripes]
Length = 293
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I + G ++GHGT + +L A+V G VER++KLI V+ L+ R+ E GD+V+
Sbjct: 27 VVPGDII-TSDTGFMRGHGTYVDEDKLTASVAGEVERVDKLICVKPLKTRFNGEVGDVVV 85
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ EV KRWK+E N D++L+LS++NLP G RRR+A DEL MR E DL+ AEV
Sbjct: 86 GRITEVQQKRWKVETNSRLDSVLLLSAVNLPGGELRRRSAEDELTMREYLHEGDLISAEV 145
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+S DG+L L R+ KYGKL +G L+ V P L+KR+K HFH+L G +I+ NG++W
Sbjct: 146 QSVFSDGALSLHTRSLKYGKLGQGVLVQVSPSLIKRQKTHFHNL-PCGASIILANNGFVW 204
Query: 216 I 216
+
Sbjct: 205 L 205
>gi|195347132|ref|XP_002040108.1| GM15529 [Drosophila sechellia]
gi|194135457|gb|EDW56973.1| GM15529 [Drosophila sechellia]
Length = 298
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 169/294 (57%), Gaps = 28/294 (9%)
Query: 16 LEKALERLE--SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
++ AL+R++ L++++ V + + E G ++GHGT + + ++V GV++++
Sbjct: 7 IDLALDRVDWRDLAAQTEEQPRVYTPGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKV 66
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI VR L++RY E GD+V+ RV EV KRW+++ N D+IL+LSS+NLP G RRR
Sbjct: 67 NKLISVRPLKSRYVGEIGDVVVARVSEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRR 126
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
+A DE MR E DL+ AEV++ +GSL L R+ KYGKL +G L+ V P LVKRRK
Sbjct: 127 SAEDEQMMRRYLDEGDLISAEVQNIFEEGSLSLYTRSLKYGKLSQGILVKVFPALVKRRK 186
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG 253
HFH+L G +I+G NGYIWI + ++ + +L+E
Sbjct: 187 MHFHNL-LCGASVILGNNGYIWISP-------------TKGQEEEGGEGGFAQNLNEH-- 230
Query: 254 TCTPREARQNICRIANAIRVLSR---LGFNITVEVILETVNLSNSLNLDIHDML 304
PR R+ I R+ N+I L++ + ++ +++ E SL + H++L
Sbjct: 231 --VPRGEREVIARLRNSILALAKCKLMIYDTSIQYAYE-----ESLRYEAHELL 277
>gi|440297040|gb|ELP89770.1| exosome complex exonuclease RRP4, putative [Entamoeba invadens IP1]
Length = 263
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 119/181 (65%), Gaps = 2/181 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
VT GD + YE+G + G+G S + + + V G+V RINKL+ V +R+RY + GD+++
Sbjct: 12 VTPGDVV-YYEEGCIPGNGISVKGQDYVSNVHGLVHRINKLVCVDPIRSRYSGDVGDVIV 70
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ + W+++IN +A+L LSS+NLPDGIQRRRTA D LNM+S F N+L+CAEV
Sbjct: 71 GRIASIGQSAWRVDINAKNNAVLQLSSVNLPDGIQRRRTADDSLNMKSFFDVNELICAEV 130
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
++ G LQ+ RN++YGKL G LL V P L+KR K H G+ I G NG+I+
Sbjct: 131 QAMSGQSGLQIHTRNERYGKLSNGMLLVVHPSLIKRCKSHISFF-NCGVKFICGMNGFIF 189
Query: 216 I 216
I
Sbjct: 190 I 190
>gi|195999020|ref|XP_002109378.1| hypothetical protein TRIADDRAFT_21452 [Trichoplax adhaerens]
gi|190587502|gb|EDV27544.1| hypothetical protein TRIADDRAFT_21452 [Trichoplax adhaerens]
Length = 236
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 51 KGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEI 110
+GHGT Q +L A+V G VE++ KLI V+ +++RY E GD+V+G + EV +RWK++
Sbjct: 8 RGHGTYLQDNKLKASVAGFVEKVGKLICVKPVKSRYNGEVGDVVVGIITEVGQRRWKVDT 67
Query: 111 NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN 170
D++LMLS++NLP G RRR+ DEL MR TE DL+ AEV+S GDGSL L R+
Sbjct: 68 YSRLDSLLMLSAVNLPGGELRRRSEKDELMMRQHLTEGDLISAEVQSVHGDGSLALHTRS 127
Query: 171 QKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
KYGKL +G L+TV P L+KR K HFH+L E G +I+G NGYIWI
Sbjct: 128 LKYGKLIQGTLVTVAPALIKRCKTHFHNL-ECGASIILGNNGYIWI 172
>gi|346470981|gb|AEO35335.1| hypothetical protein [Amblyomma maculatum]
Length = 295
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 97/205 (47%), Positives = 131/205 (63%), Gaps = 6/205 (2%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTS-DQKGE-LAATVCGVVE 71
VRL A +R + + P V GD I + ++GHGT D E L ++V GV+E
Sbjct: 11 VRLFSARKR--EVCENTRPKGLVAPGDVI-TSDLSFMRGHGTYVDSSSEQLLSSVAGVIE 67
Query: 72 RINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQR 131
++NKLI VR L+ RY E GD+VIGR++EV +RWK+E+ +A L+LSS+NLP G R
Sbjct: 68 KVNKLITVRPLKTRYNGEIGDVVIGRIVEVQQRRWKVEMASRLNASLLLSSVNLPGGELR 127
Query: 132 RRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR 191
R++A DEL MR E DL+ AEV+S DGSL L R+ KYGKL +G L+ V P L+KR
Sbjct: 128 RKSAEDELLMRQYLCEGDLISAEVQSIFSDGSLSLHTRSLKYGKLGQGTLVLVSPSLIKR 187
Query: 192 RKQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G+ +I+G NGY+W+
Sbjct: 188 CKIHFHSL-PCGVQVILGNNGYVWV 211
>gi|312373972|gb|EFR21633.1| hypothetical protein AND_16688 [Anopheles darlingi]
Length = 296
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 167/313 (53%), Gaps = 22/313 (7%)
Query: 11 TQKVRLEKALERLE-SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGV 69
T V++ A +R++ L + + N + I + G ++GHGT + + ++V GV
Sbjct: 2 TTNVKIGLAADRVDIPLLNTEDKNRRLFTPGEIVTSQQGFMRGHGTYMEDDSIKSSVAGV 61
Query: 70 VERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGI 129
+ ++NKLI V+AL+ RY E GD+V+ RV EV KRWK++ N D++L+LSS+NLP G
Sbjct: 62 MVQVNKLITVKALKGRYVGEIGDVVVARVTEVQEKRWKVDTNSRLDSVLLLSSVNLPGGE 121
Query: 130 QRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLV 189
RRR A DE MR E DL+ AEV++ DG L L R+ KYGKL +G L+ V P L+
Sbjct: 122 LRRRGAEDEKQMRKYLQEGDLISAEVQNVHSDGVLSLHTRSLKYGKLAQGILVKVFPSLI 181
Query: 190 KRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLD 249
+RRK HFH+L G +I+G NG+IWI + NSE + S
Sbjct: 182 RRRKTHFHNL-PCGASIILGNNGFIWISPIL------------NSE------GEESGGFT 222
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFY 309
+ G +E R+ + R+ N I L+ + IL S+ ++ ++L E
Sbjct: 223 QNLGDVVTQEDRETVARLKNCILGLAHCKMMLYDTSILYA--YEESMKYEVQELLQPESM 280
Query: 310 VLVAESEAERRSL 322
+VA + +R L
Sbjct: 281 AIVAFNTQQRLQL 293
>gi|302653678|ref|XP_003018662.1| hypothetical protein TRV_07352 [Trichophyton verrucosum HKI 0517]
gi|291182321|gb|EFE38017.1| hypothetical protein TRV_07352 [Trichophyton verrucosum HKI 0517]
Length = 368
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 152/283 (53%), Gaps = 22/283 (7%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKP 88
++ VT G+ I + ++GHGT + ATV G V + NKL+ V LRARY P
Sbjct: 46 DTIVTPGEII-TDDPQWMRGHGTFTPAVPATTNIIATVAGTVLKTNKLLSVYPLRARYTP 104
Query: 89 ETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEN 148
E GD+V+GR++EV KRWK++++ A L LS++NLP GI R+RTA DEL +RS F E
Sbjct: 105 EIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNEG 164
Query: 149 DLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY-----------LVKRRKQHFH 197
DLV AEV++ GDG+ L R+ KYGKL G L V +V+ R+Q +
Sbjct: 165 DLVVAEVQTVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQVWT 224
Query: 198 HLEEYG--IDLIIGCNGYIWIGEHVEARDKMVVD-QGSNSEQLIAKC-DKNSMDLDEQDG 253
YG ID+I+G NGYIWI +HV RD D G S+ + D S +
Sbjct: 225 IETAYGGPIDVILGVNGYIWISKHV--RDPSEEDSSGFKSKVSFTRLEDMVSTSMYSSQN 282
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSL 296
P R+ RIA IRVL G + E +++ S +L
Sbjct: 283 DNIPLATRKEFTRIAGCIRVLVEGGVKVDQETVMKAYEASLAL 325
>gi|157133832|ref|XP_001656299.1| rrp4 [Aedes aegypti]
gi|108870702|gb|EAT34927.1| AAEL012874-PA [Aedes aegypti]
Length = 294
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 137/230 (59%), Gaps = 3/230 (1%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
+RL L LS SNP T G+ I + G ++GHGT + ++ ++V GV+ ++
Sbjct: 7 IRLASDRANLSLLSGDSNPR-LFTPGEVI-TSQQGFMRGHGTYMEGEDIKSSVAGVMVQV 64
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
NKLI V+ L+ RY E GD+++ RV +V KRWK++ N D+IL+LSS+NLP G RRR
Sbjct: 65 NKLITVKPLKGRYVGEIGDVIVARVTDVQQKRWKVDTNSRLDSILLLSSVNLPGGELRRR 124
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
DE MR E DL+ AEV++ DG L L R+ KYGKL +G L+ V P L+KRRK
Sbjct: 125 GVEDEQQMRKYLQEGDLISAEVQNVHSDGVLSLHTRSLKYGKLGQGILVKVFPSLIKRRK 184
Query: 194 QHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDK 243
HFH+L G +I+G NG+IWI V + N E+ I+K D+
Sbjct: 185 THFHNL-PCGASIILGNNGFIWISPIVNTEGEEGGGFTQNLEESISKQDR 233
>gi|403256507|ref|XP_003920915.1| PREDICTED: exosome complex component RRP4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 285
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 126/204 (61%), Gaps = 10/204 (4%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTAFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGK V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGK--------VSPSLVKRQ 174
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 175 KTHFHDL-PCGASVILGNNGFIWI 197
>gi|195455765|ref|XP_002074857.1| GK22923 [Drosophila willistoni]
gi|194170942|gb|EDW85843.1| GK22923 [Drosophila willistoni]
Length = 300
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 139/231 (60%), Gaps = 18/231 (7%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E G ++GHGT ++ + A+V GV+E++NKLI VR L++RY E GD+V+ RVI+V KR
Sbjct: 39 EAGYMRGHGTFVEEENIKASVAGVIEKVNKLISVRPLKSRYVGEIGDVVVARVIDVQQKR 98
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W+++ N D++L+LSS+NLP G RRR+A DE MR E DL+ AEV++ +G+L
Sbjct: 99 WRVDTNSRLDSVLLLSSVNLPGGELRRRSAEDEQMMRRYLDEGDLISAEVQNIFEEGTLS 158
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
L R+ KYGKL +G L+ V P LVKRRK HFH+L G +I+G NGYIWI
Sbjct: 159 LYTRSLKYGKLSQGILVKVFPALVKRRKMHFHNL-PCGASIILGNNGYIWIAP------- 210
Query: 226 MVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSR 276
+ N E +N ++ PR R+ I R+ N I L++
Sbjct: 211 ---TKAENQEGGEGGFAQNLSEV-------VPRPEREVIARLRNCILALAK 251
>gi|156837522|ref|XP_001642785.1| hypothetical protein Kpol_1005p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156113352|gb|EDO14927.1| hypothetical protein Kpol_1005p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 365
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 150/284 (52%), Gaps = 31/284 (10%)
Query: 35 CVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
VT G+ + P++ ++GHGT ++V G + R+N+L+ V LR RY PETG
Sbjct: 54 IVTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTISRVNRLLSVIPLRGRYSPETG 109
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D VIGR+ EV KRWK++I+ Q+A+LML S+NLP GI RR++ DEL MRS E DL+
Sbjct: 110 DHVIGRITEVGNKRWKVDIDGKQNAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLL 169
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCN 211
AEV+S DGS L R+ KYGKL G L V L+ R K H H+L + +++G N
Sbjct: 170 NAEVQSLFQDGSASLHTRSLKYGKLRNGLFLQVPSSLIIRSKNHTHNLPG-NVTVLLGVN 228
Query: 212 GYIWI---GEHVEARD----KMVVDQGSNSEQLIAKCDKNSMDL---------------D 249
GYIW+ + +ARD SNS AK S ++ D
Sbjct: 229 GYIWLRKTSQMDQARDLPPGGSTGGYPSNSGPTGAKSLNPSSNMSITRLEEESSWQIYSD 288
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
E D T T RQ I R AN IR L+ IT E I+ S
Sbjct: 289 ENDPTIT-NSIRQTISRYANVIRALAYCEIGITQERIVSAYEAS 331
>gi|195384177|ref|XP_002050794.1| GJ20003 [Drosophila virilis]
gi|194145591|gb|EDW61987.1| GJ20003 [Drosophila virilis]
Length = 300
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 139/231 (60%), Gaps = 18/231 (7%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E G ++GHGT + + A+V GV+E++NKLI VR L++RY E GD+V+ RV+EV KR
Sbjct: 39 EAGFMRGHGTFVEDENIKASVAGVIEKVNKLISVRPLKSRYVGEIGDVVVARVLEVGQKR 98
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W+++ N D++L+LSS+NLP G RRR+A DE MR E DL+ AEV++ + +L
Sbjct: 99 WRVDTNSRLDSVLLLSSVNLPGGELRRRSAEDEQMMRRYLDEGDLISAEVQNVFEESTLS 158
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
L R+ KYGKL +G L+ V P LVKRRK HFH+L G +I+G NGYIWI
Sbjct: 159 LYTRSLKYGKLSQGILVKVFPALVKRRKMHFHNL-PCGASVILGNNGYIWISP------- 210
Query: 226 MVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSR 276
+ SE+ + +L+E PR R+ I R+ N I L++
Sbjct: 211 ------TKSEEQEGGEGGFAQNLNE----IVPRNEREVIARLRNCILALAK 251
>gi|315047440|ref|XP_003173095.1| exosome complex exonuclease RRP4 [Arthroderma gypseum CBS 118893]
gi|311343481|gb|EFR02684.1| exosome complex exonuclease RRP4 [Arthroderma gypseum CBS 118893]
Length = 371
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 156/289 (53%), Gaps = 33/289 (11%)
Query: 33 NSCVTVGDTI---PVYEDGILKGHGTSDQKG----ELAATVCGVVERINKLIYVRALRAR 85
++ VT G+ I P + ++GHGT + ATV G V + NKL+ V LRAR
Sbjct: 47 DTIVTPGEIITDDPQW----MRGHGTFTPTVPVTTNIIATVAGTVLKTNKLLSVYPLRAR 102
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y PE GD+V+GR++EV KRWK++++ A L LS++NLP GI R+RTA DEL +RS F
Sbjct: 103 YTPEIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFF 162
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY-----------LVKRRKQ 194
E DLV AEV+S GDG+ L R+ KYGKL G L V +V+ R+Q
Sbjct: 163 NEGDLVVAEVQSVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTARGTGVVRSRRQ 222
Query: 195 HFHHLEEYG--IDLIIGCNGYIWIGEHV-EARDKMVVDQGSNSEQL----IAKCDKNSMD 247
+ YG ID+I+G NGYIWI +HV E D+ GS S+Q+ + SM
Sbjct: 223 VWTIETAYGGPIDVILGVNGYIWISKHVGEPSDEGAT--GSKSKQVSFTRLEDMVNTSMY 280
Query: 248 LDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSL 296
+ D R+ I RIA IRVL G + E ++ S +L
Sbjct: 281 SSQNDDISL--ATRKEITRIAGCIRVLVEGGVKVDQETVMRAYEASLAL 327
>gi|406603246|emb|CCH45225.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 350
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 149/279 (53%), Gaps = 24/279 (8%)
Query: 34 SCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
S VT G+ + P++ ++GHGT + + ++V G + R+N+L+ V +R RY+PET
Sbjct: 46 SVVTPGELVTDDPIW----MRGHGTYYLENDTYSSVAGTISRVNRLLSVTPIRGRYQPET 101
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD V+GR+ EV +RWK++I QDA+LML S+NLP G+ RR++ DEL MR+ E DL
Sbjct: 102 GDHVVGRITEVGQRRWKVDIGAKQDAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGDL 161
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGC 210
+ AEV+S DGS L R+ KYGKL G L V L+ R K H H L + +IIG
Sbjct: 162 LNAEVQSLFQDGSASLHTRSLKYGKLRNGIFLKVPSSLIVRAKNHSHQLPG-NVSIIIGV 220
Query: 211 NGYIW---------------IGEHVEA-RDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGT 254
NGYIW IG++ A K + G S + +++S ++
Sbjct: 221 NGYIWLRKTTDDLLTNNQSTIGKNASAVNSKGQYNPGQGSISITRLEEESSWEIYSDQNE 280
Query: 255 CTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
R I R +N I++L+ IT I+ T S
Sbjct: 281 QISSSIRSTITRYSNCIKILAHCELGITESRIISTYEAS 319
>gi|255720428|ref|XP_002556494.1| KLTH0H14696p [Lachancea thermotolerans]
gi|238942460|emb|CAR30632.1| KLTH0H14696p [Lachancea thermotolerans CBS 6340]
Length = 370
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 21 ERLESLSSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLI 77
E++E S+++N + VT G+ + P++ ++GHGT + + A+V G V R+N+L+
Sbjct: 51 EKVEK-SAEANDGAIVTPGELVTDDPIW----MRGHGTYFLENKTYASVAGTVSRVNRLL 105
Query: 78 YVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVD 137
V LR RY PETGD +IGR+ EV +RWK++I Q A+LML S+NLP G+ RR++ D
Sbjct: 106 SVVPLRGRYAPETGDHIIGRIAEVGNRRWKVDIGAKQHAVLMLGSVNLPGGVLRRKSESD 165
Query: 138 ELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFH 197
EL MR+ E DL+ AEV+S DGS L R+ KYGKL G L V L+ R K H H
Sbjct: 166 ELQMRNFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGVFLQVPSPLIVRSKNHTH 225
Query: 198 HLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTP 257
+L + +I+G NG+IW+ R +D +NS ++ KN+ L G P
Sbjct: 226 NLPG-NVTVILGVNGFIWL------RKTSELDTANNSSAVVG---KNAATLSGASGEFKP 275
Query: 258 REARQNICRI 267
+I R+
Sbjct: 276 GNNSVSITRL 285
>gi|195026059|ref|XP_001986172.1| GH20673 [Drosophila grimshawi]
gi|193902172|gb|EDW01039.1| GH20673 [Drosophila grimshawi]
Length = 300
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 154/268 (57%), Gaps = 20/268 (7%)
Query: 11 TQKVRLEKALERLE--SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCG 68
T V ++ A++R++ +L+ + + + E G ++GHGT + ++ A+V G
Sbjct: 2 TTNVMMDLAIDRVDWNALAENQEQLPRIYTPGEVLMPEAGFMRGHGTFVEDEDIKASVAG 61
Query: 69 VVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDG 128
V++++NKLI VR L++RY E GD+V+ RV+EV KRW+++ N D++L+LSS+NLP G
Sbjct: 62 VIQKVNKLISVRPLKSRYVGEIGDVVVARVLEVGQKRWRVDTNSRLDSVLLLSSVNLPGG 121
Query: 129 IQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYL 188
RRR+A DE MR E DL+ AEV++ + +L L R+ KYGKL +G L+ V P L
Sbjct: 122 ELRRRSAEDEQMMRRYLDEGDLISAEVQNVFEESTLSLYTRSLKYGKLSQGILVKVFPAL 181
Query: 189 VKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDL 248
VKRRK HFH+L G +I+G NGYIWI D+ +G ++ L
Sbjct: 182 VKRRKMHFHNL-ACGASVILGNNGYIWISP--TKSDEQEGGEGGFAQNL----------- 227
Query: 249 DEQDGTCTPREARQNICRIANAIRVLSR 276
PR R+ I R+ N I L++
Sbjct: 228 ----SEVVPRNEREIIARLRNCILALAK 251
>gi|242013476|ref|XP_002427432.1| Exosome complex exonuclease RRP4, putative [Pediculus humanus
corporis]
gi|212511812|gb|EEB14694.1| Exosome complex exonuclease RRP4, putative [Pediculus humanus
corporis]
Length = 296
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 128/198 (64%), Gaps = 5/198 (2%)
Query: 22 RLESLSSKSNPNSCV-TVGDTIPVYEDGILKGHGT--SDQKGELAATVCGVVERINKLIY 78
R+ + +N S + T G+TI + G ++GHGT D L A+V G VE++NKLI
Sbjct: 13 RINPIIDNNNDTSNIYTPGETITC-QTGFMRGHGTYVDDDNNALKASVAGSVEQVNKLIS 71
Query: 79 VRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE 138
+R L++RY E GD+++GR+ EV KRWK++ N D+IL LSS+NLP G RRR+ DE
Sbjct: 72 MRPLKSRYFGEIGDVIVGRITEVQQKRWKVDTNSRLDSILSLSSVNLPGGELRRRSVEDE 131
Query: 139 LNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHH 198
MR E DL+ AE+++ DG+LQL R+ KYGKL +G LL V P LV+R K HFH
Sbjct: 132 QMMRKYLQEGDLISAEIQNILSDGTLQLYTRSLKYGKLSQGILLKVFPSLVRRSKTHFHS 191
Query: 199 LEEYGIDLIIGCNGYIWI 216
L G ++I+G NG+IWI
Sbjct: 192 L-PCGANIILGNNGFIWI 208
>gi|448105627|ref|XP_004200541.1| Piso0_003132 [Millerozyma farinosa CBS 7064]
gi|448108747|ref|XP_004201172.1| Piso0_003132 [Millerozyma farinosa CBS 7064]
gi|359381963|emb|CCE80800.1| Piso0_003132 [Millerozyma farinosa CBS 7064]
gi|359382728|emb|CCE80035.1| Piso0_003132 [Millerozyma farinosa CBS 7064]
Length = 341
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 150/277 (54%), Gaps = 28/277 (10%)
Query: 33 NSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
NS VT G+ + PV+ +KGHGT + ++V G V R+N+L+ V LR RY+PE
Sbjct: 32 NSLVTPGELVTDDPVW----MKGHGTYFLDNKTYSSVAGSVSRVNRLLSVIPLRGRYQPE 87
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
TGD V+GR+ EV PKRWK++I QDA+LML S+NLP G+ RR++ DEL MR+ E D
Sbjct: 88 TGDHVVGRITEVGPKRWKVDIGGKQDAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGD 147
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIG 209
L+ AEV+S +GS L R+ KYGKL G L V L+ + K H L I +I+G
Sbjct: 148 LLNAEVQSIFSNGSASLHTRSLKYGKLRNGIFLKVPSNLIIKSKNHSFDLPG-NISIILG 206
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQ--LIAKCDKN---------------SMDL--DE 250
NGYIW+ + + K ++ SN Q AK N S ++ D+
Sbjct: 207 VNGYIWLYKTPSSGRKNNINASSNKAQASFDAKGGYNPGQGSVSITRLEEESSWEIYSDK 266
Query: 251 QDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
D T R+NI N I+ LS IT + I+
Sbjct: 267 NDPNIT-GSVRKNIASYYNIIKALSHGELGITEQRII 302
>gi|158287391|ref|XP_309432.3| AGAP011211-PA [Anopheles gambiae str. PEST]
gi|157019628|gb|EAA05284.3| AGAP011211-PA [Anopheles gambiae str. PEST]
Length = 296
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 148/268 (55%), Gaps = 20/268 (7%)
Query: 8 FNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVC 67
N +RL + +S +S T G+ + + G ++GHGT + + ++V
Sbjct: 1 MNSNVSIRLACDRVNIPLISDESKSQRLFTPGEVV-TSQQGFMRGHGTYMEDDTIKSSVA 59
Query: 68 GVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPD 127
GV+ ++NKLI V+AL+ RY E GD+V+ RV EV KRWK++ N D++L+LSS+NLP
Sbjct: 60 GVMVQVNKLITVKALKGRYVGEIGDVVVARVTEVQEKRWKVDTNSRLDSMLLLSSVNLPG 119
Query: 128 GIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY 187
G RRR DE MR E DL+ AEV++ DG+L L R+ KYGKL +G L+ V P
Sbjct: 120 GELRRRGVEDEKQMRKYLQEGDLISAEVQNVHSDGTLSLHTRSLKYGKLAQGILVKVFPS 179
Query: 188 LVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMD 247
L++RRK HFH+L G +I+G NG+IWI M+ +G + +
Sbjct: 180 LIQRRKTHFHNL-PCGASIILGNNGFIWI-------SPMMNSEGGEGGGF-------TQN 224
Query: 248 LDEQDGTCTPREARQNICRIANAIRVLS 275
LD+ +E RQ I R+ N I L+
Sbjct: 225 LDD----VVTKEDRQTIARLRNCILALA 248
>gi|219114437|ref|XP_002176389.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402635|gb|EEC42625.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 308
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 158/291 (54%), Gaps = 36/291 (12%)
Query: 25 SLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGE----LAATVCGVVERINKLIYVR 80
++SS S+PN +D L+GHGT +K E L A+V G+V+R+NKL+ V
Sbjct: 26 AVSSLSDPNG-----------QDSFLRGHGTYVEKTETEDRLVASVLGIVQRVNKLVSVE 74
Query: 81 ALR-ARYKPETGDIVIGRVIEVVPKRWKLE-INFTQDAILMLSSMNLPDGIQRRRTAVDE 138
++ Y + GD+V+GR+ V +RWK+ I +DA L LS ++LP G+QR RTA D
Sbjct: 75 SVSDGVYVGQVGDLVVGRITSVTSQRWKVRLIPHARDAALPLSGVHLPGGVQRMRTAQDS 134
Query: 139 LNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHH 198
+MRS E DLV AEV +Q DGSL L R+ +YGKLE G ++TV P L+ RRK HF
Sbjct: 135 RDMRSYLQEGDLVSAEVHKTQQDGSLLLHTRSVRYGKLENGCIVTVPPKLIPRRKNHFTT 194
Query: 199 LEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA-----KCDKNSMDLDEQDG 253
+ ++ GCNG IW+ + M + + +L+ + + SM L
Sbjct: 195 ILNQQFQVLWGCNGVIWM------QRAMPDLEATGGPELVELQERRRVEHASMPLSP--- 245
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
E R+N+ R+ NAI L + +T E + + S +LNL++ ML
Sbjct: 246 -----EERRNLARLRNAIECLRLVFCRVTQEAVEQVYETSLALNLNVSQML 291
>gi|238506042|ref|XP_002384223.1| exosome complex exonuclease Rrp4, putative [Aspergillus flavus
NRRL3357]
gi|220690337|gb|EED46687.1| exosome complex exonuclease Rrp4, putative [Aspergillus flavus
NRRL3357]
Length = 372
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 26/263 (9%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 89 MRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWK 148
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV++ DG+ L
Sbjct: 149 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQTVHSDGAASLH 208
Query: 168 ARNQKYGKLERGQLLTV------DPYLVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGE 218
R+ KYGKL G L V +V+ R+Q + G +D+I+G NGYIWI +
Sbjct: 209 TRSLKYGKLRNGVFLAVTGTGGSGASIVRSRRQVWTVNTANGGGDVDVILGVNGYIWISK 268
Query: 219 HVEARDKMVVDQGSNSEQLIAKCD-KNSMDLDEQDGTCTPREARQNICRIANAIRVLSRL 277
H ++ A C +S+ + P + R+ I R+A IRVL +
Sbjct: 269 H--------------ADDTAAACSTTDSVSIYSSQNDDIPPQTRREIARLAQCIRVLVQG 314
Query: 278 GFNITVEVILETVNLSNSLNLDI 300
G + E ++ S ++L++
Sbjct: 315 GVRVDEETVMSAYEASLQVDLEV 337
>gi|296804694|ref|XP_002843197.1| exosome complex exonuclease RRP4 [Arthroderma otae CBS 113480]
gi|238845799|gb|EEQ35461.1| exosome complex exonuclease RRP4 [Arthroderma otae CBS 113480]
Length = 368
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 156/284 (54%), Gaps = 29/284 (10%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKP 88
++ VT G+ I + ++GHGT + + ATV G V + NKL+ V LRARY P
Sbjct: 47 DTIVTPGEII-TDDPQWMRGHGTFTPAAPATTNIIATVAGTVLKTNKLLSVYPLRARYTP 105
Query: 89 ETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEN 148
E GD+V+GR++EV KRWK++++ A L LS++NLP GI R+RTA DEL +RS F E
Sbjct: 106 EIGDLVVGRIVEVQSKRWKVDVSAPLLAQLPLSAINLPGGILRKRTAADELQIRSFFNEG 165
Query: 149 DLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY-----------LVKRRKQHFH 197
DLV AEV+S GDG+ L R+ KYGKL G L V +V+ R+Q +
Sbjct: 166 DLVVAEVQSVHGDGAASLHTRSLKYGKLRNGLFLAVSGMGGGSGTVRGTGVVRSRRQVWT 225
Query: 198 HLEEYG--IDLIIGCNGYIWIGEHVEARDKMVVDQGSN--SEQL----IAKCDKNSMDLD 249
YG ID+I+G NGYIWI +H+ RD D GSN S+Q+ + SM
Sbjct: 226 IETAYGGPIDVILGVNGYIWISKHI--RDPSQED-GSNPRSKQVSFTRLEDMVNASMYSS 282
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
+ D R+ I R+A IRVL G + + +++ S
Sbjct: 283 QNDRISL--ATRKEITRVAGCIRVLVEGGVKVDQDTVMKAYEAS 324
>gi|254580561|ref|XP_002496266.1| ZYRO0C14410p [Zygosaccharomyces rouxii]
gi|238939157|emb|CAR27333.1| ZYRO0C14410p [Zygosaccharomyces rouxii]
Length = 363
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 154/290 (53%), Gaps = 30/290 (10%)
Query: 28 SKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA 84
S S VT G+ + PV+ ++GHGT ++V G V R+N+L+ V LR+
Sbjct: 47 SNSTEGHIVTPGELVTDDPVW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVVPLRS 102
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY PETGD V+GR+ EV KRW+++I Q A+LML S+NLP GI RR++ DEL MRS
Sbjct: 103 RYTPETGDHVVGRIAEVGNKRWRVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSF 162
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGI 204
E DL+ AEV+S DGS L R+ KYGKL GQ V L+ R K H H+L +
Sbjct: 163 LKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGQFCQVPCSLIVRSKNHTHNLPG-NV 221
Query: 205 DLIIGCNGYIWIGEHVE---ARDK---MVVDQGSNSEQLIAKCDKNSMDL---------- 248
+++G NGYIW+ + + ARD + SN + AK ++S +
Sbjct: 222 TVVLGVNGYIWLRKTSKMDMARDAPSGISAPGPSNGAPIGAKTLRSSDSVSITRLEEESS 281
Query: 249 -----DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D T + RQ I R AN I+ L+ +IT E I+ S
Sbjct: 282 WQIYSDENDPTIS-VSLRQTISRYANVIKALAFCEIDITHERIVSAYEAS 330
>gi|323304683|gb|EGA58445.1| Rrp4p [Saccharomyces cerevisiae FostersB]
Length = 359
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 27 SSKSNPNS-CVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
+SKS +S VT G+ + P++ ++GHGT ++V G V R+N+L+ V L
Sbjct: 45 ASKSESDSQIVTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPL 100
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MR
Sbjct: 101 KGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMR 160
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
S E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L
Sbjct: 161 SFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG- 219
Query: 203 GIDLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQLIAKCDKNSMDL----------- 248
I +++G NGYIW+ + + ARD +NS + + ++ L
Sbjct: 220 NITVVLGVNGYIWLRKTSQMDLARD---TPSANNSSSIKSTGPTGAVSLNPSITRLEEES 276
Query: 249 ------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D + + RQ ICR AN I+ L+ IT + I+ S
Sbjct: 277 SWQIYSDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQQRIVSAYEAS 326
>gi|190405851|gb|EDV09118.1| 3'-5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
Length = 359
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 27 SSKSNPNS-CVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
+SKS +S VT G+ + P++ ++GHGT ++V G V R+N+L+ V L
Sbjct: 45 ASKSESDSQIVTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPL 100
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MR
Sbjct: 101 KGRYAPETGDHVVGRITEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMR 160
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
S E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L
Sbjct: 161 SFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG- 219
Query: 203 GIDLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQLIAKCDKNSMDL----------- 248
I +++G NGYIW+ + + ARD +NS + + ++ L
Sbjct: 220 NITVVLGVNGYIWLRKTSQMDLARD---TPSANNSSSIKSTGPTGAVSLNPSITRLEEES 276
Query: 249 ------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D + + RQ ICR AN I+ L+ IT + I+ S
Sbjct: 277 SWQIYSDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQQRIVSAYEAS 326
>gi|448262640|pdb|4IFD|H Chain H, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 361
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 27 SSKSNPNS-CVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
+SKS +S VT G+ + P++ ++GHGT ++V G V R+N+L+ V L
Sbjct: 47 ASKSESDSQIVTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPL 102
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MR
Sbjct: 103 KGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMR 162
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
S E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L
Sbjct: 163 SFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG- 221
Query: 203 GIDLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQLIAKCDKNSMDL----------- 248
I +++G NGYIW+ + + ARD +NS + + ++ L
Sbjct: 222 NITVVLGVNGYIWLRKTSQMDLARD---TPSANNSSSIKSTGPTGAVSLNPSITRLEEES 278
Query: 249 ------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D + + RQ ICR AN I+ L+ IT + I+ S
Sbjct: 279 SWQIYSDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQQRIVSAYEAS 328
>gi|6321860|ref|NP_011936.1| Rrp4p [Saccharomyces cerevisiae S288c]
gi|731671|sp|P38792.1|RRP4_YEAST RecName: Full=Exosome complex component RRP4; AltName:
Full=Ribosomal RNA-processing protein 4
gi|487962|gb|AAB68393.1| Yhr069cp [Saccharomyces cerevisiae]
gi|151944013|gb|EDN62306.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|207344689|gb|EDZ71749.1| YHR069Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269433|gb|EEU04728.1| Rrp4p [Saccharomyces cerevisiae JAY291]
gi|285809975|tpg|DAA06762.1| TPA: Rrp4p [Saccharomyces cerevisiae S288c]
gi|323333239|gb|EGA74637.1| Rrp4p [Saccharomyces cerevisiae AWRI796]
gi|323354639|gb|EGA86474.1| Rrp4p [Saccharomyces cerevisiae VL3]
gi|349578619|dbj|GAA23784.1| K7_Rrp4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298872|gb|EIW09967.1| Rrp4p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1588284|prf||2208299A exonuclease
Length = 359
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 27 SSKSNPNS-CVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
+SKS +S VT G+ + P++ ++GHGT ++V G V R+N+L+ V L
Sbjct: 45 ASKSESDSQIVTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPL 100
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MR
Sbjct: 101 KGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMR 160
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
S E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L
Sbjct: 161 SFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG- 219
Query: 203 GIDLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQLIAKCDKNSMDL----------- 248
I +++G NGYIW+ + + ARD +NS + + ++ L
Sbjct: 220 NITVVLGVNGYIWLRKTSQMDLARD---TPSANNSSSIKSTGPTGAVSLNPSITRLEEES 276
Query: 249 ------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D + + RQ ICR AN I+ L+ IT + I+ S
Sbjct: 277 SWQIYSDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQQRIVSAYEAS 326
>gi|344231621|gb|EGV63503.1| hypothetical protein CANTEDRAFT_114297 [Candida tenuis ATCC 10573]
gi|344231622|gb|EGV63504.1| hypothetical protein CANTEDRAFT_114297 [Candida tenuis ATCC 10573]
Length = 345
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 155/288 (53%), Gaps = 26/288 (9%)
Query: 16 LEKALERLESLSSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVER 72
++ +E ++ ++ + S VT G+ + PV+ +KGHGT + ++V G V R
Sbjct: 20 IDSDVEMSDTETNGAEQTSIVTPGELVTDDPVW----MKGHGTYFLNDNIYSSVAGNVSR 75
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+N+L+ V LR +Y+PETGD V+GR+ EV KRWK++I QDAILML S+NLP G+ RR
Sbjct: 76 VNRLLSVIPLRGKYQPETGDHVVGRITEVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRR 135
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
++ DEL MR+ E DL+ AEV+S +GS L R+ KYGKL G LTV LV +
Sbjct: 136 KSESDELQMRNFLKEGDLLNAEVQSVFSNGSASLHTRSLKYGKLRNGIFLTVPSRLVVKS 195
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEA------------RDKMVVD-QGS-----NS 234
K H H L + +I+G NG+IW+ + + R + +D QGS S
Sbjct: 196 KNHTHKLSG-DVSVILGINGFIWLSKTSTSNFTNNESNIAGNRVQSAIDGQGSYNPGVGS 254
Query: 235 EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNIT 282
+ +++S ++ P R I R N IR LS IT
Sbjct: 255 VSITRLEEESSWEIYSDKNEFIPTTVRDTITRYYNVIRALSYGELGIT 302
>gi|430811223|emb|CCJ31317.1| unnamed protein product [Pneumocystis jirovecii]
Length = 312
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 146/254 (57%), Gaps = 19/254 (7%)
Query: 35 CVTVGDTIPVYEDGILKGHGTSDQ-KGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
VT G+ I + ++GHGT + K + A+V G V+R+NKLI V+ L++RY PE GD+
Sbjct: 45 VVTPGEFI-TNDPQFMRGHGTYVRDKNTVYASVVGTVQRVNKLISVKPLKSRYLPEIGDL 103
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
VIGR+++V KRWK++I QDAILMLSS+NLP GI RR++ D L MR+ F+E DL+
Sbjct: 104 VIGRIVKVGNKRWKVDIGSKQDAILMLSSINLPGGILRRKSETDVLKMRTFFSEGDLLV- 162
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
+ R DGS+ L R+ KYGKL G + V L+ R H + L G D+I G NGY
Sbjct: 163 KYRHFFSDGSISLHTRSLKYGKLRNGSFVQVPSNLIVRSNVHSYCLPN-GTDVIFGTNGY 221
Query: 214 IWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRV 273
IW+ +HVE + G + +L E++ + T ++ R+ N I+
Sbjct: 222 IWVRKHVEMSSE---KSGVSITRL------------EEEASETIYSDINDVTRVCNIIKA 266
Query: 274 LSRLGFNITVEVIL 287
L+ I ++IL
Sbjct: 267 LAACKVTINEKMIL 280
>gi|156043601|ref|XP_001588357.1| hypothetical protein SS1G_10804 [Sclerotinia sclerotiorum 1980]
gi|154695191|gb|EDN94929.1| hypothetical protein SS1G_10804 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 328
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 147/251 (58%), Gaps = 22/251 (8%)
Query: 50 LKGHGTSDQKG--ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT G E+ TV G V++ NKL+ VR LRARY PE GD+V+GR+IEV KRW+
Sbjct: 62 MRGHGTYVAPGSTEIIGTVAGTVQKTNKLLSVRPLRARYTPEIGDLVVGRIIEVQSKRWR 121
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++I A L LS++NLP GIQR+RT DEL +R+ F+E DL+ AEV+ DGS L
Sbjct: 122 VDIGAPVLANLPLSAINLPGGIQRKRTETDELQIRTFFSEGDLLVAEVQQLYQDGSASLH 181
Query: 168 ARNQKYGKLERGQLLTVD-----PYLVKRRKQHF--HHLEEYG-IDLIIGCNGYIWIGEH 219
R+ KYGKL G + V +V+ R+Q + + G +D+I+G NG+IWI ++
Sbjct: 182 TRSLKYGKLRNGVFMAVSGTGGGGGVVRARRQVWTIDTVHNGGKVDVILGVNGFIWICKN 241
Query: 220 VEARDKMVVDQGSNSEQLIAKCDK--NSMDLDEQDGTCTPREARQNICRIANAIRVLSRL 277
VE +D E I + ++ +S Q+ TP E R+ I RI I++L
Sbjct: 242 VEVKD---------GETSITRIEESVSSAAYSSQNDDITP-ETRREIARIKGVIQLLVEE 291
Query: 278 GFNITVEVILE 288
G + E++++
Sbjct: 292 GLRVDEEMVMK 302
>gi|259146817|emb|CAY80073.1| Rrp4p [Saccharomyces cerevisiae EC1118]
gi|323348239|gb|EGA82488.1| Rrp4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 359
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 27 SSKSNPNS-CVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
+SKS +S +T G+ + P++ ++GHGT ++V G V R+N+L+ V L
Sbjct: 45 ASKSESDSQIMTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPL 100
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MR
Sbjct: 101 KGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMR 160
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
S E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L
Sbjct: 161 SFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG- 219
Query: 203 GIDLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQLIAKCDKNSMDL----------- 248
I +++G NGYIW+ + + ARD +NS + + ++ L
Sbjct: 220 NITVVLGVNGYIWLRKTSQMDLARD---TPSANNSSSIKSTGPTGAVSLNPSITRLEEES 276
Query: 249 ------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D + + RQ ICR AN I+ L+ IT + I+ S
Sbjct: 277 SWQIYSDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQQRIVSAYEAS 326
>gi|365765182|gb|EHN06694.1| Rrp4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 359
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 27 SSKSNPNSCV-TVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
+SKS +S + T G+ + P++ ++GHGT ++V G V R+N+L+ V L
Sbjct: 45 ASKSESDSQIXTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPL 100
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MR
Sbjct: 101 KGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMR 160
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
S E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L
Sbjct: 161 SFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG- 219
Query: 203 GIDLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQLIAKCDKNSMDL----------- 248
I +++G NGYIW+ + + ARD +NS + + ++ L
Sbjct: 220 NITVVLGVNGYIWLRKTSQMDLARD---TPSANNSSSIKSTGPTGAVSLNPSITRLEEES 276
Query: 249 ------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D + + RQ ICR AN I+ L+ IT + I+ S
Sbjct: 277 SWQIYSDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQQRIVSAYEAS 326
>gi|154316807|ref|XP_001557724.1| hypothetical protein BC1G_03821 [Botryotinia fuckeliana B05.10]
gi|347829366|emb|CCD45063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 337
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 151/269 (56%), Gaps = 25/269 (9%)
Query: 26 LSSKSNPNSCVTVGDTI---PVYEDGILKGHGT--SDQKGELAATVCGVVERINKLIYVR 80
LS ++ + VT G+ I P + ++GHGT + E+ TV G V++ NKL+ VR
Sbjct: 39 LSKRAQHQNIVTPGEVITDDPQW----MRGHGTYVAPASTEIIGTVAGTVQKTNKLLSVR 94
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
ALRARY PE GD+V+GR+IEV KRW+++I A L LS++NLP GIQR+RT DEL
Sbjct: 95 ALRARYTPEIGDLVVGRIIEVQSKRWRVDIGAPVLANLPLSAINLPGGIQRKRTETDELQ 154
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD-----PYLVKRRKQH 195
+R+ F+E DL+ AEV+ DGS L R+ KYGKL G + V +V+ R+Q
Sbjct: 155 IRTFFSEGDLLVAEVQQLYQDGSASLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRARRQV 214
Query: 196 FHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQD 252
+ + +D+I+G NGYIWI + VE V +G S I + N+ Q+
Sbjct: 215 WTIDTAHNGGKVDIILGVNGYIWICKTVE------VKEGETSITRIEESVSNAA-YSSQN 267
Query: 253 GTCTPREARQNICRIANAIRVLSRLGFNI 281
P E R+ I RI I++L G +
Sbjct: 268 DEIIP-ETRREIARIKGVIQLLVEEGLRV 295
>gi|221508148|gb|EEE33735.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 356
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 156/282 (55%), Gaps = 23/282 (8%)
Query: 24 ESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALR 83
+S+ S P V V V E+G ++GHGT ++ G++ A VCG++E++NKL+Y+R LR
Sbjct: 74 KSVFSGDIPGLGVVVPGQQIVVEEGCMRGHGTYEKGGKIFAAVCGILEKVNKLVYIRPLR 133
Query: 84 ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRS 143
+RY+ GD+V+GRV +++ +W +++N Q A L L++++LP+ RRR D L M++
Sbjct: 134 SRYQGSVGDVVVGRVTDILNGKWLVDVNSGQAACLALAAISLPE--HRRRLDEDMLEMQN 191
Query: 144 IFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG 203
F D++C EV+ + DG + L R+ +YG+L G L V P ++R+ H L G
Sbjct: 192 FFVVGDVICCEVQRVRADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQL-SCG 250
Query: 204 IDLIIGCNGYIWIGEHVE--ARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREAR 261
+ +++G NGYIWI ++ A+D M + + ++K E R
Sbjct: 251 VQVVLGLNGYIWISLPMKTSAKDTMNYAHVQTTHEKVSK------------------EMR 292
Query: 262 QNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDM 303
I R+ N + L+R F+I+ + I ++S S + D+
Sbjct: 293 LAISRVRNIVLCLARSNFDISTQTIERMYDVSVSRGWEAKDL 334
>gi|221486367|gb|EEE24628.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 353
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 156/282 (55%), Gaps = 23/282 (8%)
Query: 24 ESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALR 83
+S+ S P V V V E+G ++GHGT ++ G++ A VCG++E++NKL+Y+R LR
Sbjct: 71 KSVFSGDIPGLGVVVPGQQIVVEEGCMRGHGTYEKGGKIFAAVCGILEKVNKLVYIRPLR 130
Query: 84 ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRS 143
+RY+ GD+V+GRV +++ +W +++N Q A L L++++LP+ RRR D L M++
Sbjct: 131 SRYQGSVGDVVVGRVTDILNGKWLVDVNSGQAACLALAAISLPE--HRRRLDEDMLEMQN 188
Query: 144 IFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG 203
F D++C EV+ + DG + L R+ +YG+L G L V P ++R+ H L G
Sbjct: 189 FFVVGDVICCEVQRVRADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQL-SCG 247
Query: 204 IDLIIGCNGYIWIGEHVE--ARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREAR 261
+ +++G NGYIWI ++ A+D M + + ++K E R
Sbjct: 248 VQVVLGLNGYIWISLPMKTSAKDTMNYAHVQTTHEKVSK------------------EMR 289
Query: 262 QNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDM 303
I R+ N + L+R F+I+ + I ++S S + D+
Sbjct: 290 LAISRVRNIVLCLARSNFDISTQTIERMYDVSVSRGWEAKDL 331
>gi|237833725|ref|XP_002366160.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211963824|gb|EEA99019.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 353
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 156/282 (55%), Gaps = 23/282 (8%)
Query: 24 ESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALR 83
+S+ S P V V V E+G ++GHGT ++ G++ A VCG++E++NKL+Y+R LR
Sbjct: 71 KSVFSGDIPGLGVVVPGQQIVVEEGCMRGHGTYEKGGKIFAAVCGILEKVNKLVYIRPLR 130
Query: 84 ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRS 143
+RY+ GD+V+GRV +++ +W +++N Q A L L++++LP+ RRR D L M++
Sbjct: 131 SRYQGSVGDVVVGRVTDILNGKWLVDVNSGQAACLALAAISLPE--HRRRLDEDMLEMQN 188
Query: 144 IFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG 203
F D++C EV+ + DG + L R+ +YG+L G L V P ++R+ H L G
Sbjct: 189 FFVVGDVICCEVQRVRADGQILLHTRSTRYGRLMNGVFLAVAPQQIQRQSHHIVQL-SCG 247
Query: 204 IDLIIGCNGYIWIGEHVE--ARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREAR 261
+ +++G NGYIWI ++ A+D M + + ++K E R
Sbjct: 248 VQVVLGLNGYIWISLPMKTSAKDTMNYAHVQTTHEKVSK------------------EMR 289
Query: 262 QNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDM 303
I R+ N + L+R F+I+ + I ++S S + D+
Sbjct: 290 LAISRVRNIVLCLARSNFDISTQTIERMYDVSVSRGWEAKDL 331
>gi|363750642|ref|XP_003645538.1| hypothetical protein Ecym_3224 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889172|gb|AET38721.1| Hypothetical protein Ecym_3224 [Eremothecium cymbalariae
DBVPG#7215]
Length = 352
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 135/234 (57%), Gaps = 15/234 (6%)
Query: 4 LQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKG 60
Q S N++ E + +E + + N +S VT G+ + P++ ++GHGT +
Sbjct: 13 FQFSRNKSIDKHGEDSKSDIE-MDADKNASSIVTPGEMVTDDPIW----MRGHGTYFLEN 67
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
+ + V G V R+N+L+ V + RY PETGD +IGR++EV KRWK++I Q AILML
Sbjct: 68 KTYSAVVGTVSRVNRLLSVIPWKGRYSPETGDHIIGRIVEVGNKRWKVDIGGKQFAILML 127
Query: 121 SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
S+NLP G+ RR++ DEL MRS E DL+ AEV+S DGS L R+ KYGKL G
Sbjct: 128 GSVNLPGGVLRRKSESDELQMRSFLKEGDLLNAEVQSLFADGSASLHTRSLKYGKLRNGV 187
Query: 181 LLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNS 234
+ V L+ R K H H+L + +I+G NG+IW+ R +D SNS
Sbjct: 188 FINVPSSLIVRSKNHTHNLPG-NVTVILGVNGFIWL------RKTSEMDSSSNS 234
>gi|50427353|ref|XP_462289.1| DEHA2G17248p [Debaryomyces hansenii CBS767]
gi|49657959|emb|CAG90795.1| DEHA2G17248p [Debaryomyces hansenii CBS767]
Length = 346
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 144/261 (55%), Gaps = 19/261 (7%)
Query: 10 QTQKVRLEKALERLESLSSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATV 66
++ + ++ +E + + N S VT G+ + PV+ +KGHGT + ++V
Sbjct: 17 ESHDIGIDSDVEMSDGEETSKNEQSIVTPGELVTDDPVW----MKGHGTYFLNDKTYSSV 72
Query: 67 CGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLP 126
G V R+N+L+ V LR RY+ ETGD ++GR+ EV PKRWK++I Q AILML S+NLP
Sbjct: 73 AGNVSRVNRLLSVVPLRGRYQAETGDHIVGRITEVGPKRWKVDIGAKQSAILMLGSVNLP 132
Query: 127 DGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDP 186
G+ RR++ DEL MR E DL+ AEV+S +GS L R+ KYGKL G + V
Sbjct: 133 GGVLRRKSESDELQMRGFLKEGDLLNAEVQSIFSNGSASLHTRSLKYGKLRNGIFVKVPS 192
Query: 187 YLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSM 246
L+ + K H H+L I +I+G NGYIW+ + + K + SN Q A D +
Sbjct: 193 NLIIKSKNHSHNLPG-NISVILGVNGYIWLSK-TSSSGKSNANASSNKAQ--ASIDAH-- 246
Query: 247 DLDEQDGTCTPREARQNICRI 267
G+ P + +I R+
Sbjct: 247 ------GSYNPGQGSVSITRL 261
>gi|407399623|gb|EKF28367.1| exosome complex exonuclease, putative,ribosomal RNA processing
protein 4, putative [Trypanosoma cruzi marinkellei]
Length = 302
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 38/309 (12%)
Query: 35 CVTVGDTIPVYEDGI--LKGHGT------------SDQKGELAATVCGVVERINKLIYVR 80
C ++GD+ + +G+ L+G+ T + GE+ A + G++E ++++ V+
Sbjct: 13 CGSLGDSKLLEPEGVVFLRGYSTYEGNRPNEVAAAQEGGGEIIAAINGLIEVTDRVVSVK 72
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
+ RY PE GDIVIGRV EV RW+++I+ QDA+++LS+ P GI RRR DEL
Sbjct: 73 GISTRYHPEIGDIVIGRVKEVSGNRWRIDISAYQDAVMLLSNATEPGGILRRRGRNDELT 132
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGKLER-GQLLTVDPYLVKRRKQHFHH 198
MR+IF +++LV AEV+ DG + L R KYGKL G L+ V P LV+R K HF
Sbjct: 133 MRNIFDQDELVVAEVQRISSDGVVSLHTRCGDKYGKLTGFGMLVLVSPALVRRAKHHFLK 192
Query: 199 LEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR 258
L + +I+G NG +W+ V R +G+N NS +EQ T
Sbjct: 193 LGILPVGIILGTNGMVWVNPDVGQR------EGTN----------NSFYFNEQ----TDV 232
Query: 259 EARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAE 318
+ R+++ R+AN I+V++ I + + +V LS + L D+L + Y L+ + E
Sbjct: 233 DVRRSVARVANCIKVMNSARLPIFAKTVEASVKLSIDVGLGPFDVLHNSNYDLITNAVME 292
Query: 319 RRSLSKRKR 327
+++KRKR
Sbjct: 293 --AIAKRKR 299
>gi|449266767|gb|EMC77783.1| Exosome complex exonuclease RRP4, partial [Columba livia]
Length = 282
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 125/203 (61%), Gaps = 8/203 (3%)
Query: 27 SSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARY 86
+S+ V GDTI + G ++GHGT + +L A+V G VER+NKL+ VRAL+ RY
Sbjct: 5 ASRGGEKHLVAPGDTI-TTDTGYMRGHGTYVEDEKLIASVAGAVERVNKLVCVRALKTRY 63
Query: 87 KPETGDIVIGRVIEV----VPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
E GDIV+GR+ EV +P L +L+LSSMNLP G RRR+A DEL MR
Sbjct: 64 NGEVGDIVVGRITEVNLSFIPV--VLGRRMVPGWLLLLSSMNLPGGELRRRSAEDELAMR 121
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
E DL+ AEV+S DG++ L R+ KYGKL +G L+ V P LVKR+K HFH L
Sbjct: 122 DYLQEGDLISAEVQSVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PC 180
Query: 203 GIDLIIGCNGYIWIGEHVEARDK 225
G +I+G NG+IWI E +D+
Sbjct: 181 GASVILGNNGFIWIYPTPEQKDE 203
>gi|313216916|emb|CBY38128.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 132/224 (58%), Gaps = 3/224 (1%)
Query: 26 LSSKSNPNSCVTVGDTIPVYEDGILKGHGTSD-QKGELAATVCGVVERINKLIYVRALRA 84
L+ + +CV GD I D ++GHGT EL A+V G VERINKLI VR +
Sbjct: 17 LTKMDDEETCVNPGDVITENTD-FMRGHGTYQASSNELRASVAGTVERINKLITVRPAKM 75
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY E GDIV+GR+IEV K WK++ +A L L+++NLP G RRR A DEL MR
Sbjct: 76 RYNGEVGDIVVGRIIEVQQKLWKVDCGTRLNAFLNLAAVNLPGGELRRRGADDELVMRKF 135
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGI 204
E DL+ AEV+ ++ DG L L R+ KYGKL G L+ V P L++RRKQH H+L G+
Sbjct: 136 LQEGDLILAEVQKAREDGHLNLHTRSLKYGKLGPGVLIIVSPSLIRRRKQHIHNL-PCGV 194
Query: 205 DLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDL 248
I+ NG+++ VE +V + S + + I + + ++ L
Sbjct: 195 TAILATNGFVYFCPLVEEDISIVKEVDSATRENICRLRQVTLSL 238
>gi|313233921|emb|CBY10089.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 132/224 (58%), Gaps = 3/224 (1%)
Query: 26 LSSKSNPNSCVTVGDTIPVYEDGILKGHGTSD-QKGELAATVCGVVERINKLIYVRALRA 84
L+ + +CV GD I D ++GHGT EL A+V G VERINKLI VR +
Sbjct: 17 LTKMDDEETCVNPGDVITENTD-FMRGHGTYQASSNELRASVAGTVERINKLITVRPAKM 75
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY E GDIV+GR+IEV K WK++ +A L L+++NLP G RRR A DEL MR
Sbjct: 76 RYNGEVGDIVVGRIIEVQQKLWKVDCGTRLNAFLNLAAVNLPGGELRRRGADDELVMRKF 135
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGI 204
E DL+ AEV+ ++ DG L L R+ KYGKL G L+ V P L++RRKQH H+L G+
Sbjct: 136 LQEGDLILAEVQKAREDGHLNLHTRSLKYGKLGPGVLIIVSPSLIRRRKQHIHNL-PCGV 194
Query: 205 DLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDL 248
I+ NG+++ VE +V + S + + I + + ++ L
Sbjct: 195 TAILAINGFVYFCPLVEEDISIVKEVDSATRENICRLRQVTLSL 238
>gi|328857101|gb|EGG06219.1| hypothetical protein MELLADRAFT_27578 [Melampsora larici-populina
98AG31]
Length = 256
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 50 LKGHGTSDQKG-ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + G + +++ G +ERINKL+ VR LR RY+PE GD+VIGR+ EV KRWK+
Sbjct: 20 MRGHGTFVEDGMTIRSSLAGTIERINKLVSVRGLRGRYRPEVGDLVIGRIAEVQSKRWKV 79
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+ Q A+LML S+NLP G+QRR+ DEL MR F E DL+ AEV++ GDG++ L
Sbjct: 80 DAGGRQHAVLMLGSVNLPGGVQRRKLESDELQMRFFFQEGDLLVAEVQAFFGDGAMSLHT 139
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDL 206
R+ KYGKL G L+ V P L+ R K HFH L G+DL
Sbjct: 140 RSLKYGKLRNGLLVKVPPQLIHRLKSHFHTL-SCGLDL 176
>gi|45184790|ref|NP_982508.1| AAL034Cp [Ashbya gossypii ATCC 10895]
gi|44980136|gb|AAS50332.1| AAL034Cp [Ashbya gossypii ATCC 10895]
gi|374105707|gb|AEY94618.1| FAAL034Cp [Ashbya gossypii FDAG1]
Length = 351
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 139/261 (53%), Gaps = 26/261 (9%)
Query: 43 PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVV 102
PV+ ++GHGT + + ++V G V R+N+L+ V R RY PETGD ++GR++EV
Sbjct: 53 PVW----MRGHGTYFLENKTYSSVAGTVSRVNRLLSVIPWRGRYTPETGDHIVGRIVEVG 108
Query: 103 PKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDG 162
KRWK++I Q A+LML S+NLP G+ RR++ DEL MRS E DL+ AEV+S DG
Sbjct: 109 NKRWKVDIGGKQHAVLMLGSVNLPGGVLRRKSESDELQMRSFLKEGDLLNAEVQSLFQDG 168
Query: 163 SLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI------ 216
S L R+ KYGKL G + V L+ R K H H+L + +I+G NG++W+
Sbjct: 169 SSALHTRSLKYGKLRNGMFVRVPSSLIVRSKNHTHNLPG-NVTVILGVNGFVWLRKTSDI 227
Query: 217 -------GEHVEARDKMVV--------DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREAR 261
G V + + G+NS + +++S ++ P R
Sbjct: 228 DLSNNHHGSTVSGKAANTLAGVASGEYKPGANSVSITRLEEESSWEIYSDKNDPIPSNIR 287
Query: 262 QNICRIANAIRVLSRLGFNIT 282
I R AN I++L+ IT
Sbjct: 288 NTISRYANVIKILAHCEIGIT 308
>gi|401409874|ref|XP_003884385.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
gi|325118803|emb|CBZ54354.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
Length = 347
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 162/288 (56%), Gaps = 24/288 (8%)
Query: 19 ALER-LESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLI 77
+LER ES+ P V V V E+G ++GHGT ++ G++ A VCG++E++NKL+
Sbjct: 59 SLERERESVFRGDIPGLGVVVPGQQIVVEEGCMRGHGTYEKGGKIYAAVCGILEKVNKLV 118
Query: 78 YVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVD 137
Y+R LR+RY+ GD+V+GRV +++ +W +++N Q A L L++++LP+ QRRR D
Sbjct: 119 YIRPLRSRYQGSVGDVVVGRVTDILNGKWLVDVNAGQAANLALAAISLPE--QRRRLDED 176
Query: 138 ELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFH 197
L M++ F D++C EV+ + DG + L R+ +YG+L G L V P ++R++ H
Sbjct: 177 MLEMQNFFVVGDVICCEVQRVRADGQILLHTRSARYGRLLNGIFLAVAPQQIQRQRHHIV 236
Query: 198 HLEEYGIDLIIGCNGYIWIGEHVE--ARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTC 255
L G+ +++G NGYIWI ++ A+D + +++ ++K
Sbjct: 237 QL-SCGVQVVLGLNGYIWISLPLKTSAKDTLNYAHVQTTQEKVSK--------------- 280
Query: 256 TPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDM 303
E R I R+ N + L++ F+I+ + + ++S S + D+
Sbjct: 281 ---ETRLAISRVRNIVLCLAKSNFDISTQALERMYDISVSRGWEAKDL 325
>gi|50309037|ref|XP_454524.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643659|emb|CAG99611.1| KLLA0E12739p [Kluyveromyces lactis]
Length = 437
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 145/266 (54%), Gaps = 23/266 (8%)
Query: 34 SCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
S VT G+ I P++ +KGHGT + + ++V G V R+N+L+ V L++RY PET
Sbjct: 135 SIVTPGELITDDPIW----MKGHGTYFLENKTYSSVVGTVSRVNRLLSVLPLKSRYIPET 190
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD ++GR+ +V +RWK++I Q A+LML S+NLP G+ RR++ DEL MR+ E DL
Sbjct: 191 GDHIVGRITDVGNRRWKVDIGAKQYAVLMLGSVNLPGGVLRRKSETDELQMRNFLKEGDL 250
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGC 210
+ AEV+S DGS L R+ KYGKL G + V L+ R K H H+L + +I+G
Sbjct: 251 LNAEVQSLFQDGSASLHTRSLKYGKLRNGTFVQVPSSLIVRSKNHTHNLPG-NVTIILGV 309
Query: 211 NGYIWI--GEHVEARDKMVVDQGSNSEQLIAKCDKNSMDL------------DEQDGTCT 256
NG++WI ++ K S+ L + S+ + +++ T T
Sbjct: 310 NGFVWIRKSSKMDLSGKTTTTGSGQSDHLPGSNNAMSVSITRLEEESSWEIYSDKNDTVT 369
Query: 257 PREARQNICRIANAIRVLSRLGFNIT 282
RQ I R AN I+ L+ IT
Sbjct: 370 V-SVRQTITRYANVIKALAHCELGIT 394
>gi|367014473|ref|XP_003681736.1| hypothetical protein TDEL_0E02820 [Torulaspora delbrueckii]
gi|359749397|emb|CCE92525.1| hypothetical protein TDEL_0E02820 [Torulaspora delbrueckii]
Length = 355
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 145/271 (53%), Gaps = 24/271 (8%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT ++V G V ++N+L+ V L+ RY PETGD ++GR+ EV KRW+++
Sbjct: 63 MRGHGTYFLDNMTYSSVAGTVSKVNRLLSVLPLKGRYSPETGDHIVGRIAEVGNKRWRVD 122
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
I Q A+LML S+NLP GI RR++ DEL MRS E DL+ AEV+S DGS L R
Sbjct: 123 IGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHTR 182
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVEARDKM 226
+ KYGKL G V L+ R K H H+L + +++G NGYIW+ + ARD
Sbjct: 183 SLKYGKLRDGVFCQVPSSLIVRSKNHTHNLPG-NVTVVLGVNGYIWLRKTSKMDSARDAP 241
Query: 227 V-VDQGSNSEQLIA---KCDKNSMD-----------LDEQDGTCTPREARQNICRIANAI 271
GS A K D S+ +DE D T T RQ I R AN I
Sbjct: 242 SGASMGSTGGPTGAKSLKADSVSITRLEEESSWQIYVDENDPTIT-NSVRQTIARYANVI 300
Query: 272 RVLSRLGFNITVEVILE----TVNLSNSLNL 298
+ L+ IT E I+ +++ SNS +L
Sbjct: 301 KALAYCEIGITQERIVSAYEASMSYSNSGSL 331
>gi|410079336|ref|XP_003957249.1| hypothetical protein KAFR_0D04660 [Kazachstania africana CBS 2517]
gi|372463834|emb|CCF58114.1| hypothetical protein KAFR_0D04660 [Kazachstania africana CBS 2517]
Length = 358
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 150/280 (53%), Gaps = 28/280 (10%)
Query: 36 VTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
VT G+ + P++ ++GHGT ++V G V R+N+L+ V LR RY PETGD
Sbjct: 52 VTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVTPLRGRYSPETGD 107
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
++GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MRS E DL+
Sbjct: 108 HIVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLN 167
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
AEV+S DGS L R+ KYGKL G V L+ R K H H+L + +++G NG
Sbjct: 168 AEVQSLFQDGSASLHTRSLKYGKLRNGLFCQVPSSLIVRSKNHTHNLPG-NVTIVLGVNG 226
Query: 213 YIWIGEHVE---ARDK-MVVDQGS----------NSEQLIAKC---DKNSMDL--DEQDG 253
YIW+ + + ARD M GS N Q ++ +++S + DE D
Sbjct: 227 YIWLRKTSKMDLARDSPMAGSSGSANGPTGATSLNPTQNVSITRLEEESSWQIYSDENDP 286
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
+ RQ + R AN I+ L+ IT E I+ S
Sbjct: 287 DIS-NSMRQTVTRYANVIKALAYCEIGITQERIISAYEAS 325
>gi|259485587|tpe|CBF82734.1| TPA: exosome complex exonuclease Rrp4, putative (AFU_orthologue;
AFUA_3G05860) [Aspergillus nidulans FGSC A4]
Length = 390
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 146/278 (52%), Gaps = 28/278 (10%)
Query: 51 KGHGTSDQ--KGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
+GHGT + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK+
Sbjct: 82 RGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKV 141
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
++ A L LS++NLP GI RRRT+ DEL +R+ F+E DL+ AEV++ DG+ L
Sbjct: 142 DVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLLVAEVQTVHSDGAASLHT 201
Query: 169 RNQKYGKLERGQLLTVDPY---------------------LVKRRKQHFHHLEEYG---I 204
R+ KYGKL G L V +V+ R+Q F G +
Sbjct: 202 RSLKYGKLRNGVFLAVAGTGGSGASSSSTKGGLGSGSATGVVRSRRQMFTITTSNGGGDV 261
Query: 205 DLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNI 264
DL++G NGYIWI +HVE S + + NS+ Q+ +P R+ I
Sbjct: 262 DLVLGVNGYIWISKHVEGTAAASSATEHVSITRMEEMVSNSV-YSSQNDEISP-ATRREI 319
Query: 265 CRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHD 302
R+ IRVL + G + E + + S ++L+ D
Sbjct: 320 ARLTQCIRVLVQGGLRVDEETVTAAYDASLQVDLEQGD 357
>gi|365984541|ref|XP_003669103.1| hypothetical protein NDAI_0C02000 [Naumovozyma dairenensis CBS 421]
gi|343767871|emb|CCD23860.1| hypothetical protein NDAI_0C02000 [Naumovozyma dairenensis CBS 421]
Length = 364
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 151/294 (51%), Gaps = 34/294 (11%)
Query: 28 SKSNPNSC----VTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVR 80
SK N N VT G+ + P++ ++GHGT ++V G V R+N+L+ V
Sbjct: 44 SKDNDNESGLQIVTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGAVSRVNRLLSVI 99
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
L++RY PETGD ++GRV EV KRW+++I Q AILML S+NLP GI RR++ DEL
Sbjct: 100 PLKSRYSPETGDHIVGRVAEVGNKRWRVDIGGKQHAILMLGSVNLPGGILRRKSESDELQ 159
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE 200
MRS E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L
Sbjct: 160 MRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRSKNHTHNLP 219
Query: 201 EYGIDLIIGCNGYIWIGEHVE---ARDKMV-VDQGSNSEQLIAKCDKNSMDL-------- 248
I +++G NG+IW+ + + RD G+ S Q ++ L
Sbjct: 220 G-NITVVLGVNGFIWLRKTSQMDLVRDAPPGGSTGATSSQRSTAGPTGAVSLNPSITRLE 278
Query: 249 ---------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D T + R+ ICR AN I+ L+ IT E ++ S
Sbjct: 279 EESSWQIYSDENDPTIS-SNIRKTICRYANVIKALAFCEIGITQERVISAYEAS 331
>gi|67525937|ref|XP_661030.1| hypothetical protein AN3426.2 [Aspergillus nidulans FGSC A4]
gi|40743715|gb|EAA62903.1| hypothetical protein AN3426.2 [Aspergillus nidulans FGSC A4]
Length = 753
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 147/278 (52%), Gaps = 28/278 (10%)
Query: 51 KGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
+GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK+
Sbjct: 445 RGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKV 504
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
++ A L LS++NLP GI RRRT+ DEL +R+ F+E DL+ AEV++ DG+ L
Sbjct: 505 DVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLLVAEVQTVHSDGAASLHT 564
Query: 169 RNQKYGKLERGQLLTVDPY---------------------LVKRRKQHFHHLEEYG---I 204
R+ KYGKL G L V +V+ R+Q F G +
Sbjct: 565 RSLKYGKLRNGVFLAVAGTGGSGASSSSTKGGLGSGSATGVVRSRRQMFTITTSNGGGDV 624
Query: 205 DLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNI 264
DL++G NGYIWI +HVE S + + NS+ Q+ +P R+ I
Sbjct: 625 DLVLGVNGYIWISKHVEGTAAASSATEHVSITRMEEMVSNSV-YSSQNDEISP-ATRREI 682
Query: 265 CRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHD 302
R+ IRVL + G + E + + S ++L+ D
Sbjct: 683 ARLTQCIRVLVQGGLRVDEETVTAAYDASLQVDLEQGD 720
>gi|50549949|ref|XP_502446.1| YALI0D05511p [Yarrowia lipolytica]
gi|49648314|emb|CAG80634.1| YALI0D05511p [Yarrowia lipolytica CLIB122]
Length = 333
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 132/245 (53%), Gaps = 15/245 (6%)
Query: 44 VYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVV 102
+ ED I ++GHGT + ++ GVV + NKL+ V LR RY+P+ GD V+GR+++V
Sbjct: 62 ITEDPIWMRGHGTYSVGNKTFSSTAGVVTKTNKLLSVVPLRGRYQPQIGDHVVGRIVDVG 121
Query: 103 PKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDG 162
KRW+++I Q A+L L S+NLP GI RR+ DEL MR E DL+ EV+S DG
Sbjct: 122 VKRWRVDIGAKQLAVLQLGSVNLPGGILRRKQESDELQMRGFLKEGDLINTEVQSLYQDG 181
Query: 163 SLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI-----G 217
S L R+ +YGKL G L+TV L+ R K H H L G+D ++G NG+IW+
Sbjct: 182 SAALHTRSLRYGKLRNGVLITVPSALIVRAKSHVHQLPG-GVDTVVGVNGWIWLCMAWAN 240
Query: 218 EHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRL 277
H+ + + + L + D+ PR R+NI R AN + L+
Sbjct: 241 SHLTRENTTSITRLEEEASLTETYSDKNEDI--------PRSVRENIARYANCFKALAAN 292
Query: 278 GFNIT 282
IT
Sbjct: 293 EVGIT 297
>gi|260950719|ref|XP_002619656.1| hypothetical protein CLUG_00815 [Clavispora lusitaniae ATCC 42720]
gi|238847228|gb|EEQ36692.1| hypothetical protein CLUG_00815 [Clavispora lusitaniae ATCC 42720]
Length = 355
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 125/213 (58%), Gaps = 5/213 (2%)
Query: 8 FNQTQKVRLEKALERLES----LSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELA 63
F+Q V ++ E LE SS+ N N+ + + + +KGHGT E
Sbjct: 17 FDQDSDVEMDNVDESLEQDRDLQSSRPNQNASIVTPGELVTDDPTWMKGHGTYSLGNETY 76
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
++V G V R+N+L+ V LR RY+ ETGD V+GR+ EV KRWK++I QDAILML S+
Sbjct: 77 SSVAGNVSRVNRLLSVIPLRGRYEAETGDHVVGRITEVGQKRWKVDIGCKQDAILMLGSV 136
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP G+ RR+ DEL MR+ E DL+ AEV+S +GS L R+ KYGKL G L
Sbjct: 137 NLPGGVLRRKNESDELQMRNFLKEGDLLNAEVQSIFSNGSASLHTRSLKYGKLRNGIFLK 196
Query: 184 VDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
V LV ++K H ++ + +I+G NG+IW+
Sbjct: 197 VPSSLVIKQKNHSYNFPG-NVSIILGVNGHIWL 228
>gi|71406615|ref|XP_805831.1| exosome complex exonuclease [Trypanosoma cruzi strain CL Brener]
gi|70869391|gb|EAN83980.1| exosome complex exonuclease, putative [Trypanosoma cruzi]
Length = 302
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 165/309 (53%), Gaps = 38/309 (12%)
Query: 35 CVTVGDTIPVYEDGI--LKGHGT------------SDQKGELAATVCGVVERINKLIYVR 80
C ++GD+ + +G+ L+G+ T + GE+ A + G++E ++++ V+
Sbjct: 13 CGSLGDSKLLEPEGVVFLRGYSTYEGNRPNEVAAAQEGGGEIIAAINGLIEVTDRVVSVK 72
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
+ RY PE GDIVIGRV EV RW+++I+ QDA+++LS+ P GI RRR DEL
Sbjct: 73 GISTRYHPEIGDIVIGRVKEVSGNRWRIDISAYQDAVMLLSNATEPGGILRRRGRNDELT 132
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGKLER-GQLLTVDPYLVKRRKQHFHH 198
MR IF ++++V AEV+ DG + L R +KYGKL G L+ V P LV+R K HF
Sbjct: 133 MRHIFDQDEIVVAEVQRISSDGVVSLHTRCGEKYGKLTGFGMLVLVSPALVRRAKHHFLK 192
Query: 199 LEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR 258
L + +I+G NG +W+ V R NS +EQ T
Sbjct: 193 LGILPVGIILGTNGMVWVNPDVAQRGGT----------------DNSFYFNEQ----TDV 232
Query: 259 EARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAE 318
+ R+++ R+AN I+V++ I + I +V LS + L D+L + Y L+ + E
Sbjct: 233 DVRRSVARVANCIKVMNFARLPIFAKTIEASVKLSIDVGLGPFDVLHTSNYDLITNAVME 292
Query: 319 RRSLSKRKR 327
+++KRKR
Sbjct: 293 --AITKRKR 299
>gi|50289359|ref|XP_447110.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526419|emb|CAG60043.1| unnamed protein product [Candida glabrata]
Length = 369
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 148/284 (52%), Gaps = 32/284 (11%)
Query: 36 VTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
VT G+ I PV+ ++GHGT ++V G V R+N+L+ V LR RY PETGD
Sbjct: 59 VTPGELITDDPVW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLRGRYAPETGD 114
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
+IGR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MRS E DL+
Sbjct: 115 HIIGRIAEVGNKRWKVDIGSKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLN 174
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
AEV+S DGS L R+ KYGKL G V L+ R K H H+L + +++G NG
Sbjct: 175 AEVQSLFQDGSASLHTRSLKYGKLRDGIFCQVPSSLIIRSKNHTHNLPG-NVTVLLGVNG 233
Query: 213 YIWI---------------GEHVEARDKMVVDQG-----SNSEQLIAKCDKNS---MDLD 249
++W+ G R+ V G +N+ I + ++ S + D
Sbjct: 234 FVWLRKTSKMDLTRDAPPGGSTGAGRESSVGPTGATHVNTNTNISITRLEEESSWQIYSD 293
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
E D T E R+ I R AN I+ L+ IT E I+ S
Sbjct: 294 ENDPTIKNSE-RKTISRYANVIKALAFCEIGITQERIISAYEAS 336
>gi|296422245|ref|XP_002840672.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636893|emb|CAZ84863.1| unnamed protein product [Tuber melanosporum]
Length = 355
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 155/276 (56%), Gaps = 27/276 (9%)
Query: 28 SKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYK 87
SK+ P VT G+ + + ++GHGT +G +A V G +NKL+ V+ LRARY
Sbjct: 47 SKAIP--IVTPGEIV-TSDPQWMRGHGTCLMRGRDSA-VDGDDSDVNKLLSVKPLRARYT 102
Query: 88 PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTE 147
PE GD+V+GR+ EV KRWK++IN T A L+LSS+NLP GI R+RT+ DEL +RS F+E
Sbjct: 103 PEIGDLVVGRIAEVQSKRWKVDINSTLMAHLLLSSINLPGGILRKRTSTDELQIRSFFSE 162
Query: 148 NDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG---- 203
DL+ AEV+S DG+ L R+ KYGKL G L V + R K H LE
Sbjct: 163 GDLLVAEVQSLFQDGAASLHTRSLKYGKLRNGYFLKVKAGGIVRGKSHIVTLEAANGAGE 222
Query: 204 IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMD-----LDEQDGTCTPR 258
+D+I+G NGY+W+ K V Q + I + ++ + + ++E T R
Sbjct: 223 VDVILGVNGYVWV-------SKKVTLQAPPGGESITRLEEEASEAIYSNVNEDIAPVTRR 275
Query: 259 EARQNICRIANAIRVLSRLGFNITV-EVILETVNLS 293
E I R+ N +R + R +N+ V E +L V LS
Sbjct: 276 E----IARVGNCVRAMVR--WNVRVDEEVLNAVYLS 305
>gi|378732188|gb|EHY58647.1| RNA-binding protein Rrp4 and like protein [Exophiala dermatitidis
NIH/UT8656]
Length = 353
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 154/277 (55%), Gaps = 30/277 (10%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT +D + AT+ G+++ NKL+ V LRARY PE GD+V+GR++EV RWK
Sbjct: 69 MRGHGTYVTDSSTTIIATLAGLLKTTNKLLSVAPLRARYTPEIGDLVVGRIVEVQKNRWK 128
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRS-SQGDGSLQL 166
+++ A L LSS+NLP G+ RRRT DEL MR+ F E DLV AEV+ DG+ L
Sbjct: 129 VDVAAPLLAQLPLSSINLPGGVLRRRTTADELQMRNYFQEGDLVVAEVQQIGSSDGTASL 188
Query: 167 QARNQKYGKLERGQLLTVD-----PYLVKRRKQHF--HHLEEYG--IDLIIGCNGYIWIG 217
R+ KYGKL G L V +++ R+Q F + + G +D+I+G NGYIW+
Sbjct: 189 HTRSLKYGKLRNGMFLAVSGTGGGGGVIRSRRQVFTINSGAQGGGDVDVILGVNGYIWLS 248
Query: 218 EHVEARDKMVVDQG--------SNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIAN 269
+H+E D DQG SN + +++ +S + DE P R+ I RI+
Sbjct: 249 KHLEQAD----DQGRMSGGVSISNLDDVVSSAIYSSQN-DE-----IPEGTRREIARISE 298
Query: 270 AIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGS 306
I++L+ G + + +++ + + + D G+
Sbjct: 299 CIKILAEDGVRVDEDSVIKAYEAAVDAEMSVLDQAGT 335
>gi|71422268|ref|XP_812081.1| exosome complex exonuclease [Trypanosoma cruzi strain CL Brener]
gi|70876819|gb|EAN90230.1| exosome complex exonuclease, putative [Trypanosoma cruzi]
Length = 329
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 167/309 (54%), Gaps = 38/309 (12%)
Query: 35 CVTVGDTIPVYEDGI--LKGHGT------------SDQKGELAATVCGVVERINKLIYVR 80
C ++GD+ + +G+ L+G+ T + GE+ A + G++E ++++ V+
Sbjct: 40 CGSLGDSKLLEPEGVVFLRGYSTYEGNRPNEVAAAQEGGGEIIAAINGLIEVTDRVVSVK 99
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
+ RY PE GDIVIGRV EV RW+++I+ QDA+++LS+ P GI RRR DEL
Sbjct: 100 GISTRYHPEIGDIVIGRVKEVSGNRWRIDISAYQDAVMLLSNATEPGGILRRRGRNDELT 159
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGKLER-GQLLTVDPYLVKRRKQHFHH 198
MR IF ++++V AEV+ DG + L R +KYGKL G L+ V P LV+R K HF
Sbjct: 160 MRHIFDQDEIVVAEVQRISSDGVVSLHTRCGEKYGKLTGFGMLVLVSPALVRRAKHHFLK 219
Query: 199 LEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR 258
L + +I+G NG +W+ +V R NS+ +EQ T
Sbjct: 220 LVILPVGIILGTNGMVWVNPNVAQRGGT----------------DNSLYFNEQ----TDV 259
Query: 259 EARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAE 318
+ R+++ R+AN I+V++ I + I +V LS + + D+L + Y L+ + E
Sbjct: 260 DVRRSVARVANCIKVMNFARLPIFAKTIEASVKLSIDVGIGPFDVLHNSNYDLITNAVME 319
Query: 319 RRSLSKRKR 327
+++KRKR
Sbjct: 320 --AITKRKR 326
>gi|428166247|gb|EKX35226.1| hypothetical protein GUITHDRAFT_158754 [Guillardia theta CCMP2712]
Length = 280
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 158/277 (57%), Gaps = 31/277 (11%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E G L+GHGT KG+L A+V G+V+R+NKL+ V L++RY + GD+V+GRV+EV KR
Sbjct: 13 EAGFLRGHGTYVWKGKLIASVAGIVQRVNKLVSVVPLKSRYGGQVGDVVVGRVVEVGQKR 72
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W L+I Q A+LMLSS+NLP+G RRRT D+LNMR++F E DLV AE+ DGS+
Sbjct: 73 WNLDIGAAQSAVLMLSSVNLPEGEHRRRTYEDQLNMRTLFVEGDLVSAEIHQFFQDGSIS 132
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQ---------HFH------HLEEYGIDLIIGC 210
+ R+ KYGKL+ G L+ V YL++R KQ FH H+ ++
Sbjct: 133 VHTRSSKYGKLQNGMLIEVPAYLIRRAKQVLPFSFPSSPFHPPRAPPHVLSCQSEVAAHS 192
Query: 211 NGYIWIGEHV---EARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRI 267
NGYIWI HV EA + +D+ + K +E TC R+ +CR+
Sbjct: 193 NGYIWI-THVLPPEAGEAGDMDE-------LEKLGGGRPASEEDMYTC-----RKCLCRV 239
Query: 268 ANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
N+I L++ I IL+T S L++++ ML
Sbjct: 240 RNSILALAKYHLEIFSTSILDTYESSLKLDIELSSML 276
>gi|134079734|emb|CAK40872.1| unnamed protein product [Aspergillus niger]
Length = 357
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 136/245 (55%), Gaps = 13/245 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 73 MRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWK 132
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV++ DG L
Sbjct: 133 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQTVHSDGGASLH 192
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG-IDLIIGCNGYIWIGEHVEARDKM 226
R+ KYGKL G L V G +D+I+G NGYIWI +H +
Sbjct: 193 TRSLKYGKLRNGVFLAVTGTGGSGASSSSVKANGGGDVDVILGVNGYIWISKHADGAAAA 252
Query: 227 VVDQGSNS----EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNIT 282
+ S E++++ +S + D P + R+ I R+A IRVL G +
Sbjct: 253 SSTTENVSITRMEEMVSSSIYSSQNDD------IPPQTRREIARLAQCIRVLVNGGVRVD 306
Query: 283 VEVIL 287
E ++
Sbjct: 307 EETVM 311
>gi|367001080|ref|XP_003685275.1| hypothetical protein TPHA_0D02030 [Tetrapisispora phaffii CBS 4417]
gi|357523573|emb|CCE62841.1| hypothetical protein TPHA_0D02030 [Tetrapisispora phaffii CBS 4417]
Length = 365
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 151/274 (55%), Gaps = 25/274 (9%)
Query: 35 CVTVGDTIPVYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
VT G+ I ED I ++GHGT + ++ G + R+N+L+ V L+ RY PETGD
Sbjct: 55 IVTPGELI--TEDPIWMRGHGTYFLENSTYSSAAGTISRVNRLLSVIPLKGRYTPETGDH 112
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
++GR+ +V KRWK++I Q A+LML S+NLP GI RR++ DEL MR+ E D++ A
Sbjct: 113 IVGRITDVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRTFLKEGDVLNA 172
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
EV+S DGS L R+ KYGKL G L+ V LV R K H H+L + +++G NG+
Sbjct: 173 EVQSLFQDGSASLHTRSLKYGKLRDGLLIQVPSSLVVRSKNHTHNLPG-NVTVLLGVNGF 231
Query: 214 IWI---------GEHVEARDKMVVDQG---------SNSEQLIAKCDKNSMDL--DEQDG 253
IW+ E A + +G +NS + +++S + D+ D
Sbjct: 232 IWLRKTSKMDVARETPSAGPASDISEGPTGAKSLNPTNSVSITRLEEESSWKIYSDKNDP 291
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
+ TP RQNI R AN I+ L+ +T E I+
Sbjct: 292 SITP-SIRQNISRYANVIKALAFCEIGLTHERIV 324
>gi|444313939|ref|XP_004177627.1| hypothetical protein TBLA_0A03080 [Tetrapisispora blattae CBS 6284]
gi|387510666|emb|CCH58108.1| hypothetical protein TBLA_0A03080 [Tetrapisispora blattae CBS 6284]
Length = 380
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 149/284 (52%), Gaps = 29/284 (10%)
Query: 27 SSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALR 83
+S N VT G+ + P++ ++GHGT ++V G V ++N+L+ V L+
Sbjct: 64 NSTFNNQQIVTPGELVTDDPMW----MRGHGTYYLSNMTYSSVAGAVSKVNRLLSVLPLK 119
Query: 84 ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRS 143
ARY PETGD ++GR+ EV +RWK++I Q A+LML S+NLP GI RR++ DEL MRS
Sbjct: 120 ARYSPETGDHIVGRITEVGNRRWKVDIGAKQHAVLMLGSVNLPGGILRRKSENDELQMRS 179
Query: 144 IFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG 203
E DL+ AEV++ DGS L R+ KYGKL G L V L+ R K H H+L
Sbjct: 180 FLKEGDLLNAEVQTLFQDGSASLHTRSLKYGKLRDGIFLRVPSSLIVRSKNHTHNLPG-N 238
Query: 204 IDLIIGCNGYIWIGEHVE-------ARDKMVVDQGSNSEQLIAKCDKNSMDL-------- 248
+ +++G NGYIW+ + + + + S+++ + NS+ +
Sbjct: 239 VTVVLGVNGYIWLRKTSQMDLTNDSSSTNLNSSTASSTQGPTGSINTNSISITRLEEESS 298
Query: 249 -----DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
DE D T R+ I R N IR LS IT E I+
Sbjct: 299 WRIYSDENDKNIT-NNLRKTISRYTNVIRALSMGEIGITKERIV 341
>gi|407833348|gb|EKF98727.1| exosome complex exonuclease, putative,ribosomal RNA processing
protein 4, putative [Trypanosoma cruzi]
Length = 302
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 166/309 (53%), Gaps = 38/309 (12%)
Query: 35 CVTVGDTIPVYEDGI--LKGHGT------------SDQKGELAATVCGVVERINKLIYVR 80
C ++GD+ + +G+ L+G+ T + GE+ A + G++E ++++ V+
Sbjct: 13 CGSLGDSKLLEPEGVVFLRGYSTYEGNRPNEVAAAQEGGGEIIAAINGLIEVTDRVVSVK 72
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
+ RY PE GDIV+GRV EV RW+++I+ QDA+++LS+ P GI RRR DEL
Sbjct: 73 GISTRYHPEIGDIVLGRVKEVSGNRWRIDISAYQDAVMLLSNATEPGGILRRRGRNDELT 132
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGKLER-GQLLTVDPYLVKRRKQHFHH 198
MR IF ++++V AEV+ DG + L R +KYGKL G L+ V P LV+R K HF
Sbjct: 133 MRHIFDQDEIVVAEVQRISSDGVVSLHTRCGEKYGKLTGFGMLVLVSPALVRRAKHHFLK 192
Query: 199 LEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR 258
L + +I+G NG +W+ V R NS+ +EQ T
Sbjct: 193 LGILPVGIILGTNGMVWVNPDVAQRGGT----------------DNSLYFNEQ----TDI 232
Query: 259 EARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAE 318
+ R+++ R+AN I+V++ I + I +V LS + + D+L + Y L+ + E
Sbjct: 233 DVRRSVARVANCIKVMNFARLPIFAKTIEASVKLSIDVGIGPFDVLHNSNYDLITNAVME 292
Query: 319 RRSLSKRKR 327
+++KRKR
Sbjct: 293 --AITKRKR 299
>gi|414879735|tpg|DAA56866.1| TPA: hypothetical protein ZEAMMB73_993215 [Zea mays]
Length = 241
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 124/203 (61%), Gaps = 20/203 (9%)
Query: 126 PDGIQRR-RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTV 184
P+G+Q R R+ + R+ ++ DL V + G + N+ LERGQLL V
Sbjct: 54 PEGMQSRSRSPYSSIGARARWS--DLDRKSVDWTNGMTRMSKIYMNE----LERGQLLMV 107
Query: 185 DPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKN 244
PYLVKR+KQHFHHLE+Y +DLI+ CNG+IW+GEHV +K K
Sbjct: 108 APYLVKRKKQHFHHLEKYNVDLILDCNGFIWVGEHVVVGEK-------------PKTTGG 154
Query: 245 SMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
+ TP E R++ICR+AN++RVLS LGF +TVE+I+ET+ S S N++I+DML
Sbjct: 155 QQGFSTEAENFTPLETRKHICRLANSVRVLSALGFTLTVELIIETMEASVSSNVEINDML 214
Query: 305 GSEFYVLVAESEAERRSLSKRKR 327
G+EFYV AE EA+RR+ RK+
Sbjct: 215 GAEFYVQTAEREAKRRADLLRKK 237
>gi|323337291|gb|EGA78544.1| Rrp4p [Saccharomyces cerevisiae Vin13]
Length = 281
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 134/250 (53%), Gaps = 25/250 (10%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
++V G V R+N+L+ V L+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+
Sbjct: 4 SSVAGTVSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSV 63
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI RR++ DEL MRS E DL+ AEV+S DGS L R+ KYGKL G
Sbjct: 64 NLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQ 123
Query: 184 VDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQLIAK 240
V L+ R K H H+L I +++G NGYIW+ + + ARD +NS + +
Sbjct: 124 VPSSLIVRAKNHTHNLPG-NITVVLGVNGYIWLRKTSQMDLARD---TPSANNSSSIKST 179
Query: 241 CDKNSMDL-----------------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITV 283
++ L DE D + + RQ ICR AN I+ L+ IT
Sbjct: 180 GPTGAVSLNPSITRLEEESSWQIYSDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQ 238
Query: 284 EVILETVNLS 293
+ I+ S
Sbjct: 239 QRIVSAYEAS 248
>gi|403214403|emb|CCK68904.1| hypothetical protein KNAG_0B04690 [Kazachstania naganishii CBS
8797]
Length = 365
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 119/195 (61%), Gaps = 8/195 (4%)
Query: 25 SLSSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRA 81
S+S + + VT G+ I PV+ ++GHGT ++V G V ++NKL+ V
Sbjct: 42 SISRRDTDSPIVTPGELITDDPVW----MRGHGTYFLDNVTYSSVVGTVSKVNKLLSVVP 97
Query: 82 LRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNM 141
L+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL M
Sbjct: 98 LKGRYAPETGDHVVGRISEVGNKRWKVDIGAKQHAVLMLGSVNLPGGILRRKSENDELQM 157
Query: 142 RSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEE 201
RS E DL+ AEV+S DGS L R+ KYGKL GQ V L+ + K H H+L
Sbjct: 158 RSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRDGQFCGVASSLIVKSKNHTHNLPG 217
Query: 202 YGIDLIIGCNGYIWI 216
+ +++G NGYIW+
Sbjct: 218 -NVTVVLGVNGYIWL 231
>gi|300175432|emb|CBK20743.2| unnamed protein product [Blastocystis hominis]
Length = 189
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E L+GHG + G++ A+VCGVVER+NKLI VR+L++RY P+ GD+V+ RV+ +V
Sbjct: 2 ETHFLRGHGVYVKDGKMIASVCGVVERVNKLISVRSLKSRYIPKIGDVVVARVLGIVGSS 61
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W ++I Q+++L ++S+ LP G RRR D L MRSIF ND++ AEV+ G
Sbjct: 62 WDMDIASYQNSVLSINSILLPGGEHRRRNDADVLQMRSIFVPNDIISAEVQQINRQGESY 121
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
L R+ KYGKL G L++V L+KR QHF +L G+ IIG NGYIW+
Sbjct: 122 LHTRSPKYGKLSSGVLVSVPCVLIKRLNQHFVNL-PCGVGCIIGNNGYIWV 171
>gi|401838217|gb|EJT41947.1| RRP4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 252
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 120/200 (60%), Gaps = 8/200 (4%)
Query: 20 LERLESLSSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKL 76
L + S S S+ + VT G+ I P++ ++GHGT ++V G V R+N+L
Sbjct: 39 LPDVNSRSKDSSDSQIVTPGELITDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRL 94
Query: 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAV 136
+ V L+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++
Sbjct: 95 LSVIPLKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSES 154
Query: 137 DELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHF 196
DEL MRS E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H
Sbjct: 155 DELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHT 214
Query: 197 HHLEEYGIDLIIGCNGYIWI 216
H+L I +++G NGY+W+
Sbjct: 215 HNLPG-NITVVLGVNGYMWL 233
>gi|452983151|gb|EME82909.1| hypothetical protein MYCFIDRAFT_164219 [Pseudocercospora fijiensis
CIRAD86]
Length = 290
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 155/272 (56%), Gaps = 22/272 (8%)
Query: 50 LKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
++GHGT D + +T+ G +++ NKLI V LRARY PE GD+VIGR++EV +R
Sbjct: 14 MRGHGTFAAADDTAAAIRSTLAGTIQKTNKLISVVPLRARYNPEVGDLVIGRIVEVQSRR 73
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK+++ A+L LSS+NLP G R+RT+VDELN+RS F E +L+ AEV++ DGS
Sbjct: 74 WKVDVAAPVLAVLQLSSINLPGGALRKRTSVDELNIRSFFGEGELIVAEVQNLFHDGSAA 133
Query: 166 LQARNQKYGKLERGQLLTVD-----PYLVKRRKQHFHHLEEYG--IDLIIGCNGYIWIGE 218
L R+ KYGKL G + V +V+ ++Q F G +D+++G NGY+WI +
Sbjct: 134 LHTRSLKYGKLRNGYFMAVSGMGGGMGVVRSKRQIFTLQTSRGGEVDVMLGVNGYVWIEK 193
Query: 219 HVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLG 278
HV+ + D G N + A S DE +P + R+ I R+A I+ L
Sbjct: 194 HVQEQSSQ--DVGINRLEETASIGMYSTQNDE----ISP-DTRREIARVAGCIKAL---- 242
Query: 279 FNITVEVILETVNLSNSLNLDIHDMLGSEFYV 310
+V+V TV + +L++ +M G+ Y+
Sbjct: 243 VEGSVKVEEHTVRRAYDASLELDEMEGATQYL 274
>gi|212544972|ref|XP_002152640.1| exosome complex exonuclease Rrp4, putative [Talaromyces marneffei
ATCC 18224]
gi|210065609|gb|EEA19703.1| exosome complex exonuclease Rrp4, putative [Talaromyces marneffei
ATCC 18224]
Length = 380
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 146/290 (50%), Gaps = 44/290 (15%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V + NKL+ V LRARY PE GD+V+GR++EV +RWK
Sbjct: 67 MRGHGTFTTPFSTSIIATVAGTVSKTNKLLSVHPLRARYMPEIGDLVVGRIVEVQARRWK 126
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++I A L LS++NLP GI RRRT+ DEL MR+ F E DLV AEV+S DGS L
Sbjct: 127 VDIAAPLLAQLPLSAINLPGGILRRRTSADELQMRNFFVEGDLVVAEVQSVHQDGSATLH 186
Query: 168 ARNQKYGKLERGQLLTVDPY-----------------------------LVKRRKQHFHH 198
R+ YGKL G +TV +V+ R+Q +
Sbjct: 187 TRSLSYGKLRNGVFMTVTGTGGSGSAVSKKSSAAASNLAAPSSAAAVGGVVRSRRQKWTI 246
Query: 199 LEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSM---DLDEQD 252
G I++I+G NGYIWI K+ +++ + ++ M +
Sbjct: 247 NAANGGGDIEIILGVNGYIWI-------SKLADGAAASTTETVSITRMEEMATHSIYSSQ 299
Query: 253 GTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHD 302
PR+ R+ I R+A IRVL G I + ++ N S ++L++ D
Sbjct: 300 NNEIPRQTRREIARLAGCIRVLVEGGVRIEHDTVMSAYNASLEVDLEMAD 349
>gi|448530544|ref|XP_003870089.1| hypothetical protein CORT_0E03700 [Candida orthopsilosis Co 90-125]
gi|380354443|emb|CCG23958.1| hypothetical protein CORT_0E03700 [Candida orthopsilosis]
Length = 361
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 133/240 (55%), Gaps = 23/240 (9%)
Query: 33 NSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
N+ VT G+ I PV+ +KGHGT + ++V G + R+N+L+ V A+R +Y PE
Sbjct: 56 NAIVTPGELITSDPVW----MKGHGTYFINDKTYSSVVGNISRVNRLLSVNAIRGKYTPE 111
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
TGD V+GR+ EV KRWK++I QDAILML S+NLP GI RR++ DEL MRS E D
Sbjct: 112 TGDHVVGRITEVANKRWKVDIGTKQDAILMLGSVNLPGGILRRKSESDELQMRSFLKEGD 171
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIG 209
L+ EV++ +G L R+ KYGKL G L + LV + K H + L + +I+G
Sbjct: 172 LLNCEVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSSLVVKSKNHSYDLPG-NVSVILG 230
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGT--CTPREARQNICRI 267
NGYIW+ + + ++ + KN L Q G TP + +I R+
Sbjct: 231 VNGYIWLYK-------------TKAKPATSSATKNETGLKVQSGAKDYTPGQGSVSITRL 277
>gi|391868728|gb|EIT77938.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp4 [Aspergillus
oryzae 3.042]
Length = 392
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 149/287 (51%), Gaps = 38/287 (13%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 73 MRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWK 132
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV++ DG+ L
Sbjct: 133 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQTVHSDGAASLH 192
Query: 168 ARNQKYGKLERGQLLTV-------------------DPY------------LVKRRKQHF 196
R+ KYGKL G L V P +V+ R+Q +
Sbjct: 193 TRSLKYGKLRNGVFLAVTGTGGSGASSSMVKGGVGSGPIPAGAMGASGTGGVVRSRRQVW 252
Query: 197 HHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG 253
G +D+I+G NGYIWI +H A D ++S + + S +
Sbjct: 253 TVNTANGGGDVDVILGVNGYIWISKH--ADDTAAACSTTDSVSITRMEEMVSSSIYSSQN 310
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
P + R+ I R+A IRVL + G + E ++ S ++L++
Sbjct: 311 DDIPPQTRREIARLAQCIRVLVQGGVRVDEETVMSAYEASLQVDLEV 357
>gi|344305272|gb|EGW35504.1| hypothetical protein SPAPADRAFT_58743 [Spathaspora passalidarum
NRRL Y-27907]
Length = 344
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 138/264 (52%), Gaps = 22/264 (8%)
Query: 36 VTVGDTIPVYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIV 94
VT G+ I ED I +KGHGT ++V G V R+N+L+ V LR RY PETGD +
Sbjct: 45 VTPGELIT--EDPIWMKGHGTYFLNDSTYSSVAGSVSRVNRLLSVIPLRGRYSPETGDHI 102
Query: 95 IGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAE 154
+GR+ EV KRWK++I QDA+LML S+NLP GI RR++ DEL MR+ E DL+ E
Sbjct: 103 VGRITEVANKRWKVDIGTRQDAVLMLGSVNLPGGILRRKSESDELQMRNFLKEGDLLNCE 162
Query: 155 VRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYI 214
V++ +G L R+ KYGKL G L V L+ + K H + L + +I+G NGYI
Sbjct: 163 VQTIFSNGIASLHTRSLKYGKLRNGIFLKVPSSLIVKSKNHAYDLPG-SVSVILGSNGYI 221
Query: 215 WI----------------GEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPR 258
W+ ++ RD QGS S + + + D+ D T
Sbjct: 222 WLHKTLANTSTTTTVNQNAAKIQGRD-YAPGQGSISITRLEEESSWEIYSDQNDPNIT-S 279
Query: 259 EARQNICRIANAIRVLSRLGFNIT 282
R NI R N I+ L+ IT
Sbjct: 280 STRSNISRYYNVIKALAYGELGIT 303
>gi|452844533|gb|EME46467.1| hypothetical protein DOTSEDRAFT_70462 [Dothistroma septosporum
NZE10]
Length = 338
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 139/235 (59%), Gaps = 19/235 (8%)
Query: 50 LKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
++GHGT +D + +T+ G +++ NKL+ V LRARY PE GD+VIGR++EV +R
Sbjct: 66 MRGHGTFASDTDTSTIIRSTLAGTLQKTNKLLSVVPLRARYTPEIGDLVIGRIVEVQSRR 125
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK+++ A L+LSS+NLP GI R+RT+VDELN+RS F E +L+ AEV+S DGS
Sbjct: 126 WKVDVAAPLLANLLLSSINLPGGILRKRTSVDELNIRSFFGEGELLVAEVQSLFQDGSAS 185
Query: 166 LQARNQKYGKLERGQLL-----TVDPYLVKRRKQHFH-HLEEYGIDLIIGCNGYIWIGEH 219
L R+ KYGKL G + +V+ ++Q F H +D I+G NGYIWI +H
Sbjct: 186 LHTRSLKYGKLRNGYFMAVSGVGGGAGVVRSKRQIFTIHTRAGEVDCILGVNGYIWINKH 245
Query: 220 VEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVL 274
+ ++++ G N + A S DE P E R+ I RIA+ IR L
Sbjct: 246 IGEKEEV----GVNRLEETASAGMYSSQNDE-----IPPEMRREIARIASCIRAL 291
>gi|425778640|gb|EKV16758.1| Exosome complex exonuclease Rrp4, putative [Penicillium digitatum
PHI26]
gi|425784154|gb|EKV21947.1| Exosome complex exonuclease Rrp4, putative [Penicillium digitatum
Pd1]
Length = 392
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 152/295 (51%), Gaps = 50/295 (16%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V LRARY PE GD+V+GR++EV +RWK
Sbjct: 70 MRGHGTYMNPLSTSIIATVAGTVQKTNKLLSVHPLRARYTPEIGDLVVGRIVEVQSRRWK 129
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV+S DGS L
Sbjct: 130 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQSVHQDGSASLH 189
Query: 168 ARNQKYGKLERGQLLTVDPY-----------------------------------LVKRR 192
R+ KYGKL G L V +V+ R
Sbjct: 190 TRSLKYGKLRNGVFLAVTGTGGSAASSSSVKGGVGAGNSTAGSALAAPGGSGTGGVVRSR 249
Query: 193 KQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQLIAKCDKNS 245
+Q + G +++I+G NGYI+I +H + D + S E++++ +S
Sbjct: 250 RQVWTVTAANGGGEVNIILGVNGYIFISKHTDGADAASATTENISITRMEEMVSSSIYSS 309
Query: 246 MDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
+ D P + R+ I R+A IRVL + G + E ++ N S ++L++
Sbjct: 310 QNDD------IPPQTRREIARLAQCIRVLVQNGVRVDEETVMGAYNASLQVDLEV 358
>gi|354547831|emb|CCE44566.1| hypothetical protein CPAR2_403690 [Candida parapsilosis]
Length = 348
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 133/240 (55%), Gaps = 25/240 (10%)
Query: 33 NSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
N+ VT G+ I PV+ +KGHGT + ++V G + R+N+L+ V A+R +Y PE
Sbjct: 45 NAIVTPGELITSDPVW----MKGHGTYFINDKTYSSVVGNISRVNRLLSVNAIRGKYVPE 100
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
TGD V+GR+ EV KRWK++I QDAILML S+NLP GI RR++ DEL MRS E D
Sbjct: 101 TGDHVVGRITEVANKRWKVDIGTKQDAILMLGSVNLPGGILRRKSESDELQMRSFLKEGD 160
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIG 209
L+ EV++ +G L R+ KYGKL G L + LV + K H + L + +I+G
Sbjct: 161 LLNCEVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSSLVVKSKNHSYDLPG-NVSVILG 219
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGT--CTPREARQNICRI 267
NGYIW+ ++ +A NS L Q GT TP + +I R+
Sbjct: 220 VNGYIWL---------------YKTKAKLAPSTVNSNGLKVQSGTKDYTPGQGSISITRL 264
>gi|115402927|ref|XP_001217540.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189386|gb|EAU31086.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 383
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 149/288 (51%), Gaps = 37/288 (12%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 70 MRGHGTYMNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWK 129
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV++ DG+ L
Sbjct: 130 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQTVHSDGAASLH 189
Query: 168 ARNQKYGKLERGQLLTV------------------------------DPYLVKRRKQHFH 197
R+ KYGKL G L V +V+ R+Q +
Sbjct: 190 TRSLKYGKLRNGVFLAVTGTGGSGASSSTVKGGVGAGAGSAATGSSGTGGVVRSRRQVWT 249
Query: 198 HLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGT 254
G +D+I+G NGYIWI +H + S S + + +S+ + D
Sbjct: 250 VSTANGGGDVDVILGVNGYIWISKHADDTPAASSTTESVSITRMEEMVSSSIYSSQNDEI 309
Query: 255 CTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHD 302
P R+ I R+A I++L + G + E ++ S ++L++ D
Sbjct: 310 APP--TRREIARLAQCIQILVQGGVRVDEETVMAAYEESLQVDLEVGD 355
>gi|169779940|ref|XP_001824434.1| exosome complex component rrp4 [Aspergillus oryzae RIB40]
gi|83773174|dbj|BAE63301.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 392
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 149/287 (51%), Gaps = 38/287 (13%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 73 MRGHGTYINPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWK 132
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV++ DG+ L
Sbjct: 133 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQTVHSDGAASLH 192
Query: 168 ARNQKYGKLERGQLLTV-------------------DPY------------LVKRRKQHF 196
R+ KYGKL G L V P +V+ R+Q +
Sbjct: 193 TRSLKYGKLRNGVFLAVTGTGGSGASSSMVKGGVGSGPIPAGAMGASGTGGVVRSRRQVW 252
Query: 197 HHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG 253
G +D+I+G NGYIWI +H A D ++S + + S +
Sbjct: 253 TVNTANGGGDVDVILGVNGYIWISKH--ADDTAAACSTTDSVSITRMEEMVSSSIYSSQN 310
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
P + R+ I R+A IRVL + G + E ++ S ++L++
Sbjct: 311 DDIPPQTRREIARLAQCIRVLVQGGVRVDEENVMSAYEASLQVDLEV 357
>gi|406868726|gb|EKD21763.1| exosome complex exonuclease RRP4 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 573
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 156/302 (51%), Gaps = 46/302 (15%)
Query: 9 NQTQKVRLEKALE-RLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGT--SDQKGELAAT 65
NQ V LE L+ R + S+ VT G T+ + ++GHGT + E+ AT
Sbjct: 258 NQDGGVGLEGDLDMRPAKRARHSSAKDLVTPGQTV-TDDPQWMRGHGTYVASSSTEIIAT 316
Query: 66 VCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNL 125
V G +++ NKL+ VR LRARY PE GD+V+GR++EV KRW++++ A L LS++NL
Sbjct: 317 VAGTIQKTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWRVDVGAPVLAGLPLSAINL 376
Query: 126 PDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG------ 179
P GI R+RT DEL +R+ F+E DL+ AEV+S DGS L R+ KYGKL G
Sbjct: 377 PGGILRKRTDTDELQIRTFFSEGDLLIAEVQSLHQDGSASLHTRSLKYGKLRNGVFMSVS 436
Query: 180 -------------QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKM 226
Q+ T+D V Q +D+++G NGYIWI +HVE
Sbjct: 437 GVGGGGGVVRSRRQVWTID--TVSGGGQ---------VDIVLGVNGYIWISKHVEV---- 481
Query: 227 VVDQGSNSEQLIAKCDKN--SMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVE 284
+ + I + ++N S Q+ P + R+ I RI I +L G I +
Sbjct: 482 -----AGGDTAITRMEENISSTVYSSQNDEIGP-DTRREISRIRGVINLLVEEGIRIDED 535
Query: 285 VI 286
++
Sbjct: 536 MV 537
>gi|345562044|gb|EGX45116.1| hypothetical protein AOL_s00173g217 [Arthrobotrys oligospora ATCC
24927]
Length = 350
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 138/248 (55%), Gaps = 12/248 (4%)
Query: 50 LKGHGT-------SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVV 102
++GHGT + +++ G + + NKL+ +RAL+ RY PE GD+V+GR++EV
Sbjct: 66 MRGHGTYLSQPLAPGGSQSIVSSLAGTISKTNKLLSIRALKFRYVPEIGDLVVGRILEVQ 125
Query: 103 PKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDG 162
KRW+++I A L+LSS+NLP GI R+RT+ DEL +R+ F+E DL+ AEV++ DG
Sbjct: 126 TKRWRVDIAAPHSATLLLSSINLPGGILRKRTSTDELQIRTFFSEGDLLVAEVQTLSNDG 185
Query: 163 SLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIGE 218
L R+ KYGKL G +T+D +V+R K H + +D+ +G NGYI+I +
Sbjct: 186 LASLHTRSLKYGKLRNGVFMTIDAGMVRRMKSHVLTMNTSNGGGEVDIYLGVNGYIYIAK 245
Query: 219 HVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLG 278
H + +G + + + + + +P E R I RIA I L++ G
Sbjct: 246 HTTPLTESGGPEGKSVSITRLEEEASEAIYSNVNEEISP-ETRAEIARIACVIGALAKNG 304
Query: 279 FNITVEVI 286
+ E++
Sbjct: 305 VKVDDEMV 312
>gi|225685150|gb|EEH23434.1| 3'-5'-exoribonuclease [Paracoccidioides brasiliensis Pb03]
Length = 376
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 142/258 (55%), Gaps = 24/258 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V + NKL+ V+ LRARY PE GD+V+GR++EV +RWK+++ A L LS++
Sbjct: 95 ATVAGTVLKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 154
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G LT
Sbjct: 155 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLT 214
Query: 184 VDPY-----------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V +V+ R+Q + G ID+I+G NGYIWI +HV D VD
Sbjct: 215 VAGMGAAGGVVRGTGVVRSRRQVWTLTAGNGGGEIDVILGVNGYIWISKHVVG-DGFGVD 273
Query: 230 QGSNSEQLIAKCDK--NSMDLDEQD---GTCTPREARQNICRIANAIRVLSRLGFNITVE 284
S+ E I + D+ +S Q+ G T RE I R+ IRVL + +
Sbjct: 274 AASSGEVSITRMDEMVSSAIYSSQNDEIGLATRRE----IARLCGCIRVLVEGNVKVDED 329
Query: 285 VILETVNLSNSLNLDIHD 302
+++ S + L++ D
Sbjct: 330 TVMKAYEASMEIELEVGD 347
>gi|195121992|ref|XP_002005496.1| GI19036 [Drosophila mojavensis]
gi|193910564|gb|EDW09431.1| GI19036 [Drosophila mojavensis]
Length = 300
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 138/231 (59%), Gaps = 18/231 (7%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E G ++GHGT + + A+V GV+E++NKLI VR L++RY E GD+V+ RV+EV KR
Sbjct: 39 EAGFMRGHGTFVEDENIKASVAGVIEKVNKLISVRPLKSRYVGEIGDVVVARVLEVGQKR 98
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W+++ N D++L+LSS+NLP G RRR+A DE MR E DL+ AEV++ +G+L
Sbjct: 99 WRVDTNSRLDSLLLLSSVNLPGGELRRRSAEDEQMMRRYLDEGDLISAEVQNVFEEGTLS 158
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
L R+ KYGKL +G L+ V P LVKRRK HFH+L G +I+G NGYIWI D
Sbjct: 159 LYTRSLKYGKLSQGILVKVFPALVKRRKMHFHNL-PCGASVILGNNGYIWISP--TKTDD 215
Query: 226 MVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSR 276
V +G ++ L PR R+ I R+ N I L++
Sbjct: 216 QVGGEGGFAQNLT---------------EVVPRNEREVIARLRNCILALAK 251
>gi|453086300|gb|EMF14342.1| hypothetical protein SEPMUDRAFT_41489 [Mycosphaerella populorum
SO2202]
Length = 311
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 140/256 (54%), Gaps = 18/256 (7%)
Query: 50 LKGHGT----SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
++GHGT SD + +TV G +++ NKL+ V LRARY PE GD+VIGR++EV +R
Sbjct: 31 MRGHGTFTAPSDSTSAIRSTVAGTLQKTNKLLSVVPLRARYTPEIGDLVIGRIVEVQSRR 90
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK+++ A L LSS+NLP G RRRT DELN+RS F E +L+ AEV+S DGS
Sbjct: 91 WKVDVAAPVLASLQLSSINLPGGTLRRRTGYDELNIRSFFGEGELLVAEVQSLFQDGSAA 150
Query: 166 LQARNQKYGKLERGQLLT----VDPYLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIG 217
L R+ KYGKL G + V R K+ ++ G +D+I+G NGY+WI
Sbjct: 151 LHTRSLKYGKLRNGYFMAVSGVGGGSGVVRSKRQIFTIQTRGKGGEVDVILGVNGYVWIN 210
Query: 218 EHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRL 277
+H E +++ + E+ ++ +S + DE E R+ I R+A IR L
Sbjct: 211 KHAELKEQGDAVGLNKIEETVSIGMYSSQN-DE-----IGNETRREIARVAGCIRALVEG 264
Query: 278 GFNITVEVILETVNLS 293
+ E ++ S
Sbjct: 265 SVKVAEETVVRAYEAS 280
>gi|358369064|dbj|GAA85679.1| exosome complex exonuclease Rrp4 [Aspergillus kawachii IFO 4308]
Length = 390
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 149/291 (51%), Gaps = 46/291 (15%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 73 MRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWK 132
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV+S DG L
Sbjct: 133 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQSVHSDGGASLH 192
Query: 168 ARNQKYGKLERGQLLTVD-------------------------------PYLVKRRKQHF 196
R+ KYGKL G L V +V+ R+Q +
Sbjct: 193 TRSLKYGKLRNGVFLAVTGTGGSGASSSSVKGTSGASATGAGAGGAAGAGGVVRSRRQVW 252
Query: 197 HHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQLIAKCDKNSMDLD 249
G +D+I+G NGYIWI +H + + S E++++ +S + D
Sbjct: 253 TINTANGGGDVDVILGVNGYIWISKHADGAAAASSTTENVSITRMEEMVSSSIYSSQNDD 312
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
P + R+ I R+A IRVL G + E ++ S ++L++
Sbjct: 313 ------IPPQTRREIARLAQCIRVLVNGGVRVDEETVMGAYEASLQVDLEV 357
>gi|320583720|gb|EFW97933.1| 3'-5' exoribonuclease [Ogataea parapolymorpha DL-1]
Length = 328
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 114/187 (60%), Gaps = 8/187 (4%)
Query: 33 NSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
+S VT G+ I P + ++GHGT + ++V G V ++NKL+ V + RY PE
Sbjct: 20 SSVVTPGELITDDPTW----MRGHGTYFLNDKTYSSVAGTVLKVNKLLSVVPFKGRYSPE 75
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
TGD ++GR+I+V KRWK++I DA+LML S+NLP GI RR++ DEL MR+ E D
Sbjct: 76 TGDHLVGRIIDVGQKRWKVDIGGEHDAVLMLGSVNLPGGILRRKSESDELQMRNFLKEGD 135
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIG 209
L+ AEV+S DGS L R+ KYGKL G + V L+ R K H H L + +I+G
Sbjct: 136 LLNAEVQSLFSDGSASLHTRSLKYGKLRNGVFVAVPSKLIVRAKNHSHDLPG-NVSIILG 194
Query: 210 CNGYIWI 216
NGY WI
Sbjct: 195 VNGYCWI 201
>gi|226294476|gb|EEH49896.1| exosome complex exonuclease RRP4 [Paracoccidioides brasiliensis
Pb18]
Length = 381
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 142/258 (55%), Gaps = 24/258 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V + NKL+ V+ LRARY PE GD+V+GR++EV +RWK+++ A L LS++
Sbjct: 100 ATVAGTVLKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 159
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G LT
Sbjct: 160 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLT 219
Query: 184 VDPY-----------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V +V+ R+Q + G ID+I+G NGYIWI +HV D VD
Sbjct: 220 VAGMGAAGGVVRGTGVVRSRRQVWTLTAGNGGGEIDVILGVNGYIWISKHVVG-DGFGVD 278
Query: 230 QGSNSEQLIAKCDK--NSMDLDEQD---GTCTPREARQNICRIANAIRVLSRLGFNITVE 284
S+ E I + D+ +S Q+ G T RE I R+ IRVL + +
Sbjct: 279 AASSGEVSITRMDEMVSSAIYSSQNDEIGLATRRE----ISRLCGCIRVLVEGNVKVDED 334
Query: 285 VILETVNLSNSLNLDIHD 302
+++ S + L++ D
Sbjct: 335 TVMKAYEASMEIELEVGD 352
>gi|146415688|ref|XP_001483814.1| hypothetical protein PGUG_04543 [Meyerozyma guilliermondii ATCC
6260]
Length = 330
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 135/254 (53%), Gaps = 17/254 (6%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
+KGHGT + ++V G V R+N+L+ V LR +Y+ ETGD V+GR+ EV KRWK++
Sbjct: 41 MKGHGTYFLNEKTYSSVAGNVSRVNRLLSVIPLRGKYQAETGDHVVGRITEVGNKRWKVD 100
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
I QDA+LML S+NLP G+ RR++ DEL MR+ E DL+ AEV+S+ G + L R
Sbjct: 101 IGCRQDAVLMLGSINLPGGVLRRKSESDELQMRNFLKEGDLLNAEVQSTYASGMVALHTR 160
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE-------- 221
+ KYGKL G LL V LV + K H + + + +I+G NGYIWI +
Sbjct: 161 SLKYGKLRNGILLQVPSSLVVKSKNHSYDMPG-NVSVILGVNGYIWISKTTSYQLSATNA 219
Query: 222 ----ARDKMVVDQGSNSEQLIAKC----DKNSMDLDEQDGTCTPREARQNICRIANAIRV 273
A+ + G N Q +++S ++ R NI R N IR
Sbjct: 220 ATNRAQASIESQAGYNPGQASVAITRLEEESSWEIYSDKNDPISDTIRNNITRYYNVIRA 279
Query: 274 LSRLGFNITVEVIL 287
LS IT + I+
Sbjct: 280 LSYGELGITEQRII 293
>gi|190348059|gb|EDK40445.2| hypothetical protein PGUG_04543 [Meyerozyma guilliermondii ATCC
6260]
Length = 330
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 135/254 (53%), Gaps = 17/254 (6%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
+KGHGT + ++V G V R+N+L+ V LR +Y+ ETGD V+GR+ EV KRWK++
Sbjct: 41 MKGHGTYFLNEKTYSSVAGNVSRVNRLLSVIPLRGKYQAETGDHVVGRITEVGNKRWKVD 100
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
I QDA+LML S+NLP G+ RR++ DEL MR+ E DL+ AEV+S+ G + L R
Sbjct: 101 IGCRQDAVLMLGSINLPGGVLRRKSESDELQMRNFLKEGDLLNAEVQSTYASGMVALHTR 160
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE-------- 221
+ KYGKL G LL V LV + K H + + + +I+G NGYIWI +
Sbjct: 161 SLKYGKLRNGILLQVPSSLVVKSKNHSYDMPG-NVSVILGVNGYIWISKTTSYQSSATNA 219
Query: 222 ----ARDKMVVDQGSNSEQLIAKC----DKNSMDLDEQDGTCTPREARQNICRIANAIRV 273
A+ + G N Q +++S ++ R NI R N IR
Sbjct: 220 ATNRAQASIESQAGYNPGQASVAITRLEEESSWEIYSDKNDPISDTIRNNITRYYNVIRA 279
Query: 274 LSRLGFNITVEVIL 287
LS IT + I+
Sbjct: 280 LSYGELGITEQRII 293
>gi|150865065|ref|XP_001384122.2| hypothetical protein PICST_31470 [Scheffersomyces stipitis CBS
6054]
gi|149386321|gb|ABN66093.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 347
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 31/279 (11%)
Query: 34 SCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
S VT G+ + P++ +KGHGT + ++V G + R+N+L+ V L+ RY+PET
Sbjct: 39 SIVTPGELVTDDPIW----MKGHGTYFLEDRTFSSVAGNISRVNRLLSVIPLKGRYQPET 94
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD ++GR+ EV KRWK++I QDA+LML S+NLP G+ RR++ DEL MR+ E DL
Sbjct: 95 GDHIVGRITEVGNKRWKVDIGTKQDAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGDL 154
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGC 210
+ AEV++ +G L R+ KYGKL G L V LV + K H + L + +++G
Sbjct: 155 LNAEVQTIFNNGIASLHTRSLKYGKLRNGMFLKVPSSLVIKSKNHSYDLPG-NVSIVLGV 213
Query: 211 NGYIWIGE----------------------HVEARDKMVVDQGSNSEQLIAKCDKNSMDL 248
NGYIW+ + V+ + QGS S + + +
Sbjct: 214 NGYIWLYKTSTGINSATNTSVTSNTNMFRASVDTTGSYAIGQGSVSITRLEEESSWEIYS 273
Query: 249 DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
D+ D + R NI R N +R +S IT + I+
Sbjct: 274 DKNDPNIS-NSVRSNITRYNNVLRAMSFCELGITEQRII 311
>gi|366996124|ref|XP_003677825.1| hypothetical protein NCAS_0H01670 [Naumovozyma castellii CBS 4309]
gi|342303695|emb|CCC71477.1| hypothetical protein NCAS_0H01670 [Naumovozyma castellii CBS 4309]
Length = 370
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/184 (44%), Positives = 114/184 (61%), Gaps = 8/184 (4%)
Query: 36 VTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
VT G+ + P++ ++GHGT ++V G V R+N+L+ V L++RY PETGD
Sbjct: 58 VTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKSRYSPETGD 113
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
++GR+ EV KRW+++I Q A+LML S+NLP GI RR++ DEL MRS E DL+
Sbjct: 114 HIVGRIAEVGNKRWRVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLN 173
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
AEV+S DGS L R+ KYGKL G V L+ R K H H+L I +++G NG
Sbjct: 174 AEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG-NITVVLGVNG 232
Query: 213 YIWI 216
YIW+
Sbjct: 233 YIWL 236
>gi|336260201|ref|XP_003344897.1| hypothetical protein SMAC_06183 [Sordaria macrospora k-hell]
gi|380089096|emb|CCC13040.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 385
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 155/289 (53%), Gaps = 22/289 (7%)
Query: 26 LSSKSNPNSC-VTVGDTIPVYEDGILKGHGT---SDQKGELAAT--VCGVVERINKLIYV 79
++S S P S VT G+ I + ++GHGT S GE A T + G+V R NKL+ V
Sbjct: 77 VTSSSVPRSAIVTPGERI-TTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSV 135
Query: 80 RALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDEL 139
R LRARY PE GD+V+GR++EV KRW++++ TQ A L LS++NLP GI R+RT DEL
Sbjct: 136 RPLRARYTPEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDEL 195
Query: 140 NMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT----VDPYLVKRRKQH 195
+R+ F E DLV AEV+ DG L R+ KYGKL G + V R ++
Sbjct: 196 QIRTFFAEGDLVVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQ 255
Query: 196 FHHLEEYG----IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDK--NSMDLD 249
LE ID+I+G NGY+WI +HVE VV + + + I ++ ++
Sbjct: 256 VWTLESANNGGPIDIILGVNGYVWISKHVEP----VVPEEAKGQTGITNIEEVVSATMYS 311
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNL 298
Q+ P R+ I RI + L G + +++ + N + L L
Sbjct: 312 SQNDRIEPETMRE-IARIRGVVTALVENGLRVDEDMVTKGYNEAVELAL 359
>gi|400598530|gb|EJP66239.1| exosome complex exonuclease RRP4 [Beauveria bassiana ARSEF 2860]
Length = 327
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 113/185 (61%), Gaps = 13/185 (7%)
Query: 51 KGHGTSDQKGE--LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
+GHGT G + +++ G + R NKL+ VR LRARY PE GD+V+GR++EV KRW++
Sbjct: 49 RGHGTYVPHGSTSITSSLAGTLTRTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWRV 108
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
++ +Q AIL +S++NLP GI R+RT DEL +RS F+E DLV AEV+ DG+ L
Sbjct: 109 DVAASQLAILQISAINLPGGILRKRTETDELQIRSFFSEGDLVVAEVQQLHQDGAASLHT 168
Query: 169 RNQKYGKLERGQLLTVDP-------YLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIG 217
R+ KYGKL G +V KR+ +E G +D+++G NGYIWI
Sbjct: 169 RSLKYGKLRNGVFASVSGTGGGAGVVRAKRQAWTMEPVEGAGAAHKMDVLLGVNGYIWIS 228
Query: 218 EHVEA 222
HVE
Sbjct: 229 RHVEG 233
>gi|225559582|gb|EEH07864.1| exosome complex exonuclease RRP4 [Ajellomyces capsulatus G186AR]
Length = 372
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 141/255 (55%), Gaps = 24/255 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK+++ A L LS++
Sbjct: 93 ATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 152
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G L
Sbjct: 153 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLA 212
Query: 184 VDPYLVK-----------RRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V V R+Q + +G ID+I+G NGYIWI +HV D
Sbjct: 213 VGGISVAGGVVRGSGVVRSRRQVWTFTASHGAGEIDVILGVNGYIWIAKHVGDGDLGGTA 272
Query: 230 QGSNS----EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
G S E++++ +S +++ G T RE I R+ IRVL G + +
Sbjct: 273 AGDVSITRMEEMVSSAIYSSQ--NDEIGPATRRE----IARLCGCIRVLVEGGVKVDEDT 326
Query: 286 ILETVNLSNSLNLDI 300
+++ + S + L+I
Sbjct: 327 VMKAYSASLDIELEI 341
>gi|240279317|gb|EER42822.1| exosome complex exonuclease RRP4 [Ajellomyces capsulatus H143]
gi|325089585|gb|EGC42895.1| exosome complex exonuclease RRP4 [Ajellomyces capsulatus H88]
Length = 372
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 142/255 (55%), Gaps = 24/255 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK+++ A L LS++
Sbjct: 93 ATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 152
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G L
Sbjct: 153 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLA 212
Query: 184 VDPYLVK-----------RRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V V R+Q + +G ID+I+G NGYIWI +HV D
Sbjct: 213 VGRISVAGGVVRGSGVVRSRRQVWTFTASHGAGEIDVILGVNGYIWIAKHVGDGDLGGTA 272
Query: 230 QGSNS----EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
G+ S E++++ +S +++ G T RE I R+ IRVL G + +
Sbjct: 273 AGNVSITRMEEMVSSAIYSSQ--NDEIGPATRRE----IARLCGCIRVLVEGGVKVDEDT 326
Query: 286 ILETVNLSNSLNLDI 300
+++ + S + L+I
Sbjct: 327 VMKAYSASLDIELEI 341
>gi|154281095|ref|XP_001541360.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411539|gb|EDN06927.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 372
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 141/255 (55%), Gaps = 24/255 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK+++ A L LS++
Sbjct: 93 ATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 152
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G L
Sbjct: 153 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLA 212
Query: 184 VDPYLVK-----------RRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V V R+Q + +G ID+I+G NGYIWI +HV D
Sbjct: 213 VGGISVAGGVVRGSGVVRSRRQVWTFTASHGAGEIDVILGVNGYIWIAKHVGDGDVGGTV 272
Query: 230 QGSNS----EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
G S E++++ +S +++ G T RE I R+ IRVL G + +
Sbjct: 273 AGDVSITRMEEMVSSAIYSSQ--NDEIGPATRRE----IARLCGCIRVLVEGGVKVDEDT 326
Query: 286 ILETVNLSNSLNLDI 300
+++ + S + L+I
Sbjct: 327 VMKAYSASLEIELEI 341
>gi|290462865|gb|ADD24480.1| Exosome complex exonuclease RRP4 [Lepeophtheirus salmonis]
Length = 196
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 115/167 (68%), Gaps = 7/167 (4%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT--SDQKGE----LAATVCGVVERINKLIYVRALRARY 86
+ VT GD I E G ++GHGT SD+ E L A+V GVV+R+NKLI V LR+ Y
Sbjct: 20 TTFVTPGDII-TRESGYMRGHGTYASDEGNEEKECLIASVGGVVKRVNKLIRVLPLRSTY 78
Query: 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFT 146
+ E GD+++GR++EV KRWK+E+N DAIL LSS+NLP G RRR++ DEL+MR+
Sbjct: 79 QGEIGDVLVGRIVEVQQKRWKVEVNSRLDAILHLSSVNLPGGELRRRSSEDELSMRTYLR 138
Query: 147 ENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRK 193
E DL+ AEV++ DGS+ + R+ KYGKLE G ++ V P L+KR+K
Sbjct: 139 EGDLISAEVQTLYKDGSMSIHTRSLKYGKLEGGTVIKVSPSLIKRQK 185
>gi|255721219|ref|XP_002545544.1| exosome complex exonuclease RRP4 [Candida tropicalis MYA-3404]
gi|240136033|gb|EER35586.1| exosome complex exonuclease RRP4 [Candida tropicalis MYA-3404]
Length = 293
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 143/260 (55%), Gaps = 8/260 (3%)
Query: 33 NSCVTVGDTIPVYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
NS VT G+ I ED I +KGHGT + ++V G + R+N+L+ V LR +Y PETG
Sbjct: 40 NSIVTPGELIT--EDPIWMKGHGTYFLNDKTYSSVAGNISRVNRLLSVIPLRGKYSPETG 97
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D VIGR+ EV KRWK++I QDA+LML S+NLP G+ RR++ DEL MR+ E DL+
Sbjct: 98 DHVIGRITEVGNKRWKVDIGAKQDAVLMLGSVNLPGGVLRRKSESDELQMRNFLKEGDLL 157
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCN 211
EV++ +G L R+ KYGKL G L V L+ + K H L + +++G N
Sbjct: 158 NCEVQTIFNNGMASLHTRSLKYGKLRNGIFLKVPSSLIVKSKNHAFDLPG-NVSIVLGSN 216
Query: 212 GYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAI 271
GY W+ + K + S++ + +++S ++ + R NI + N +
Sbjct: 217 GYTWLYK----TPKTNKSKESSAPGITRLEEESSWEIYSDKNEFIDVQTRHNIAKYYNIL 272
Query: 272 RVLSRLGFNITVEVILETVN 291
+ L+ I EV++E +
Sbjct: 273 KSLAAKEQKINSEVLIEAFD 292
>gi|242814286|ref|XP_002486340.1| exosome complex exonuclease Rrp4, putative [Talaromyces stipitatus
ATCC 10500]
gi|218714679|gb|EED14102.1| exosome complex exonuclease Rrp4, putative [Talaromyces stipitatus
ATCC 10500]
Length = 386
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 144/289 (49%), Gaps = 40/289 (13%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V + NKL+ V LRARY PE GD+V+GR++EV +RWK
Sbjct: 65 MRGHGTFTTPLSTSIIATVAGTVSKTNKLLSVHPLRARYMPEIGDLVVGRIVEVQARRWK 124
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++I A L LS++NLP GI RRRT+ DEL MR+ F E DLV AEV+S DGS L
Sbjct: 125 VDIAAPLLAQLPLSAINLPGGILRRRTSADELQMRNFFVEGDLVVAEVQSVHQDGSATLH 184
Query: 168 ARNQKYGKLERGQLLTV---------------------------DPY------LVKRRKQ 194
R+ YGKL G + V P +V+ R+Q
Sbjct: 185 TRSLSYGKLRNGVFMAVTGTGGSGAAATTSNRSKTSGAGSNIAAPPSAAAVGGVVRSRRQ 244
Query: 195 HFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQ 251
+ G I++I+G NGYIWI + + S + + +S+ +
Sbjct: 245 KWTVNAANGGGDIEIILGVNGYIWISKKADTSTAASSTTEPVSITRMEELATSSIYSSQN 304
Query: 252 DGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
D PR+ R+ I R+A IRVL I + ++ N S ++L++
Sbjct: 305 D--EIPRQTRREIARLAGCIRVLVESSVRIEQDTVMSAYNASLEVDLEM 351
>gi|241954570|ref|XP_002420006.1| exosome complex exonuclease, putative; ribosomal RNA processing
protein, putative [Candida dubliniensis CD36]
gi|223643347|emb|CAX42222.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 302
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 148/271 (54%), Gaps = 12/271 (4%)
Query: 24 ESLSSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVR 80
+S ++ + NS VT G+ I P + +KGHGT + ++V G + R+N+L+ V
Sbjct: 40 QSATTATAGNSIVTPGELITEDPTW----MKGHGTYFLNDKTYSSVAGSISRVNRLLSVI 95
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
LR RY PETGD VIGR+ +V KRWK++I QDAILML S+NLP G+ RR++ DEL
Sbjct: 96 PLRGRYSPETGDHVIGRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQ 155
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE 200
MR+ E DL+ EV++ +G L R+ KYGKL G + + L+ + K H L
Sbjct: 156 MRNFLKEGDLLNCEVQTIFNNGIASLHTRSLKYGKLRNGIFIKIPSPLIVKTKNHAFDLP 215
Query: 201 EYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREA 260
+ +++G NGYIW+ + + + +N+ + +++S ++ +
Sbjct: 216 G-NVSIVLGTNGYIWLYKTPKINKSL----ENNTPGITRLEEESSWEIYSDKNEFIDVQT 270
Query: 261 RQNICRIANAIRVLSRLGFNITVEVILETVN 291
R NI + N I+ L+ I +V++E +
Sbjct: 271 RNNIAKYYNIIKSLAEKEQKINNDVLVEAFD 301
>gi|340939389|gb|EGS20011.1| putative exosome complex protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 358
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 126/226 (55%), Gaps = 22/226 (9%)
Query: 17 EKALERLESLSSKSNPNSC-----------VTVGDTIPVYEDGILKGHGTSDQKG--ELA 63
E + +L S++ P S VT G+ I ++GHGT G +
Sbjct: 32 EGGVPLTSNLPSRAKPKSSLFTTTKSSSDIVTPGELITTSPQ-FMRGHGTYIPPGTTSII 90
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
++V G + R NKL+ VR LRARY PE GD+V+GR+IEV +RW++++ TQ A L LS++
Sbjct: 91 SSVAGTILRTNKLLSVRPLRARYTPEVGDLVVGRIIEVQARRWRVDVGSTQFASLPLSAI 150
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL MRS F+E DL+ AEV+ GDG L R+ KYGKL G +
Sbjct: 151 NLPGGILRKRTETDELQMRSFFSEGDLLVAEVQGVYGDGGAVLHTRSLKYGKLRNGVFVA 210
Query: 184 ----VDPYLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIGEHVE 221
V R ++ LE ID+++G NGY+WI +H E
Sbjct: 211 VSGMGGGGGVVRSRRQVWTLEGANGAGLIDVVLGVNGYVWIAKHTE 256
>gi|68486193|ref|XP_709945.1| likely exosome component Rrp4p [Candida albicans SC5314]
gi|68486254|ref|XP_712984.1| likely exosome component Rrp4p [Candida albicans SC5314]
gi|46434409|gb|EAK93819.1| likely exosome component Rrp4p [Candida albicans SC5314]
gi|46434442|gb|EAK93851.1| likely exosome component Rrp4p [Candida albicans SC5314]
Length = 304
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 143/262 (54%), Gaps = 12/262 (4%)
Query: 33 NSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
NS VT G+ I P + +KGHGT + ++V G + R+N+L+ V LR RY PE
Sbjct: 51 NSIVTPGELITEDPTW----MKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLRGRYSPE 106
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
TGD VIGR+ +V KRWK++I QDAILML S+NLP G+ RR++ DEL MR+ E D
Sbjct: 107 TGDHVIGRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRNFLKEGD 166
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIG 209
L+ EV++ +G L R+ KYGKL G L + L+ + K H L + +++G
Sbjct: 167 LLNCEVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSPLIVKTKNHAFDLPG-NVSIVLG 225
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIAN 269
NGYIW+ + + + +N+ + +++S ++ + R NI + N
Sbjct: 226 TNGYIWLYKTPKINKSL----ENNTPGITRLEEESSWEIYSDKNEFIDVQTRNNIAKYYN 281
Query: 270 AIRVLSRLGFNITVEVILETVN 291
I+ L+ I +V++E +
Sbjct: 282 IIKSLAEKEQKINNDVLVEAFD 303
>gi|449296522|gb|EMC92542.1| hypothetical protein BAUCODRAFT_78185 [Baudoinia compniacensis UAMH
10762]
Length = 305
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 152/273 (55%), Gaps = 24/273 (8%)
Query: 27 SSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELA--ATVCGVVERINKLIYVRA 81
S + +T G+TI P + ++GHGT + +T+ G +++ NKL+ +
Sbjct: 8 SGHGHSVKVITPGETITDDPQW----MRGHGTFAGADSITIRSTLAGTLQKTNKLLSIVP 63
Query: 82 LRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNM 141
LRARY PE GD+VIGR++EV +RWK+++ A L+LSS+NLP G+ R+RT+VDELN+
Sbjct: 64 LRARYTPEIGDLVIGRIVEVQGRRWKVDVAAPLLANLLLSSINLPGGVLRKRTSVDELNI 123
Query: 142 RSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY-----LVKRRKQHF 196
R+ F E +L+ AEV+S DGS L R+ +YGKL G ++V +V+ ++Q F
Sbjct: 124 RAFFGEGELLVAEVQSLFQDGSASLHTRSLRYGKLRNGYFMSVSGMGGGAGVVRAKRQIF 183
Query: 197 H-HLEEYG--IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDG 253
G +D+I+G NGYIWI +HV D+ D G N + + SM + D
Sbjct: 184 TLQTTRSGGEVDVILGVNGYIWISKHVA--DEKKEDVGINR---LEETASTSMYSSQND- 237
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVI 286
E RQ I IA+ IR L G + E +
Sbjct: 238 -VVEAETRQEIATIASCIRALIEGGVKVEEETV 269
>gi|295663366|ref|XP_002792236.1| exosome complex exonuclease RRP4 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279411|gb|EEH34977.1| exosome complex exonuclease RRP4 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 364
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 142/258 (55%), Gaps = 25/258 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V + NKL+ V+ LRARY PE GD+V+GR++EV +RWK+++ A L LS++
Sbjct: 84 ATVAGTVLKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWKVDVAAPLLAQLPLSAI 143
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G LT
Sbjct: 144 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLT 203
Query: 184 VDPY-----------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V +V+ R+Q + G ID+I+G NGYIWI +HV D VD
Sbjct: 204 VAGMGAAGGVVRGTGVVRSRRQVWTLTAGNGGGEIDVILGVNGYIWISKHVG--DGFGVD 261
Query: 230 QGSNSEQLIAKCDK--NSMDLDEQD---GTCTPREARQNICRIANAIRVLSRLGFNITVE 284
S+ + I + D+ +S Q+ G T RE I R+ IRVL + +
Sbjct: 262 SASSWDVSITRMDEMVSSAIYSSQNDEIGLATRRE----IARLCGCIRVLVEGNVKVDED 317
Query: 285 VILETVNLSNSLNLDIHD 302
+++ S + L++ D
Sbjct: 318 TVMKAYEASMEIELEVGD 335
>gi|317032517|ref|XP_001395031.2| exosome complex component rrp4 [Aspergillus niger CBS 513.88]
Length = 390
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 143/278 (51%), Gaps = 46/278 (16%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 73 MRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWK 132
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV++ DG L
Sbjct: 133 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQTVHSDGGASLH 192
Query: 168 ARNQKYGKLERGQLLTVD-------------------------------PYLVKRRKQHF 196
R+ KYGKL G L V +V+ R+Q +
Sbjct: 193 TRSLKYGKLRNGVFLAVTGTGGSGASSSSVKGTSGASATGAGAGGAAGAGGVVRSRRQVW 252
Query: 197 HHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQLIAKCDKNSMDLD 249
G +D+I+G NGYIWI +H + + S E++++ +S + D
Sbjct: 253 TINTANGGGDVDVILGVNGYIWISKHADGAAAASSTTENVSITRMEEMVSSSIYSSQNDD 312
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
P + R+ I R+A IRVL G + E ++
Sbjct: 313 ------IPPQTRREIARLAQCIRVLVNGGVRVDEETVM 344
>gi|238881488|gb|EEQ45126.1| exosome complex exonuclease RRP4 [Candida albicans WO-1]
Length = 304
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 143/262 (54%), Gaps = 12/262 (4%)
Query: 33 NSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
NS VT G+ I P + +KGHGT + ++V G + R+N+L+ V LR RY PE
Sbjct: 51 NSIVTPGELITEDPTW----MKGHGTYFINDKTYSSVAGSISRVNRLLSVIPLRGRYSPE 106
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
TGD VIGR+ +V KRWK++I QDAILML S+NLP G+ RR++ DEL MR+ E D
Sbjct: 107 TGDHVIGRITDVGNKRWKVDIGAKQDAILMLGSVNLPGGVLRRKSESDELQMRNFLKEGD 166
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIG 209
L+ EV++ +G L R+ KYGKL G L + L+ + K H L + +++G
Sbjct: 167 LLNCEVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSPLIVKTKNHAFDLPG-NVSIVLG 225
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIAN 269
NGYIW+ + + + +N+ + +++S ++ + R NI + N
Sbjct: 226 TNGYIWLYKTPKINKSL----ENNTPGITRLEEESSWEIYSDKNEFIDVQTRNNIAKYYN 281
Query: 270 AIRVLSRLGFNITVEVILETVN 291
I+ L+ I +V++E +
Sbjct: 282 IIKSLAEKEQKINNDVLVEAFD 303
>gi|350631728|gb|EHA20099.1| hypothetical protein ASPNIDRAFT_130155 [Aspergillus niger ATCC
1015]
Length = 741
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 142/278 (51%), Gaps = 46/278 (16%)
Query: 50 LKGHGTSDQK--GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 424 MRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGDLVVGRIVEVQSRRWK 483
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV++ DG L
Sbjct: 484 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQTVHSDGGASLH 543
Query: 168 ARNQKYGKLERGQLLTV-------------------------------DPYLVKRRKQHF 196
R+ KYGKL G L V +V+ R+Q +
Sbjct: 544 TRSLKYGKLRNGVFLAVTGTGGSGASSSSVKGTSGASATGAGAGGAAGAGGVVRSRRQVW 603
Query: 197 HHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQLIAKCDKNSMDLD 249
G +D+I+G NGYIWI +H + + S E++++ +S + D
Sbjct: 604 TINTANGGGDVDVILGVNGYIWISKHADGAAAASSTTENVSITRMEEMVSSSIYSSQNDD 663
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVIL 287
P + R+ I R+A IRVL G + E ++
Sbjct: 664 ------IPPQTRREIARLAQCIRVLVNGGVRVDEETVM 695
>gi|159128032|gb|EDP53147.1| exosome complex exonuclease Rrp4, putative [Aspergillus fumigatus
A1163]
Length = 390
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 153/291 (52%), Gaps = 46/291 (15%)
Query: 50 LKGHGTSDQK--GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 73 MRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLRARYIPEIGDLVVGRIVEVQSRRWK 132
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++I A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV+S DGS L
Sbjct: 133 VDIAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQSVHSDGSASLH 192
Query: 168 ARNQKYGKLERGQLLTV---------------DP----------------YLVKRRKQHF 196
R+ KYGKL G L V P +V+ R+Q +
Sbjct: 193 TRSLKYGKLRNGVFLAVAGTGGSGASSSTVKGGPGAGTASAGLLGTSGTGGVVRARRQQW 252
Query: 197 HHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQLIAKCDKNSMDLD 249
G +++I+G NGYIWI +H + + S E++++ +S + D
Sbjct: 253 TVNTANGGGEVNIILGVNGYIWIAKHADGAAAASSTTENVSITRMEEMVSSSIYSSQN-D 311
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
E P + R+ I R+A IRVL + G + E ++ + S ++L++
Sbjct: 312 E-----IPPQTRREIARLAQCIRVLVQGGVRVDEETVMRAYDASLQVDLEV 357
>gi|71000673|ref|XP_755018.1| exosome complex exonuclease Rrp4 [Aspergillus fumigatus Af293]
gi|66852655|gb|EAL92980.1| exosome complex exonuclease Rrp4, putative [Aspergillus fumigatus
Af293]
Length = 390
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 153/291 (52%), Gaps = 46/291 (15%)
Query: 50 LKGHGTSDQK--GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 73 MRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLRARYIPEIGDLVVGRIVEVQSRRWK 132
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++I A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV+S DGS L
Sbjct: 133 VDIAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQSVHSDGSASLH 192
Query: 168 ARNQKYGKLERGQLLTV---------------DP----------------YLVKRRKQHF 196
R+ KYGKL G L V P +V+ R+Q +
Sbjct: 193 TRSLKYGKLRNGVFLAVAGTGGSGASSSTVKGGPGAGTASAGLLGTSGTGGVVRARRQQW 252
Query: 197 HHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQLIAKCDKNSMDLD 249
G +++I+G NGYIWI +H + + S E++++ +S + D
Sbjct: 253 TVNTANGGGEVNIILGVNGYIWIAKHADGAAAASSTTENVSITRMEEMVSSSIYSSQN-D 311
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
E P + R+ I R+A IRVL + G + E ++ + S ++L++
Sbjct: 312 E-----IPPQTRREIARLAQCIRVLVQGGVRVDEETVMRAYDASLQVDLEV 357
>gi|119493346|ref|XP_001263863.1| exosome complex exonuclease Rrp4, putative [Neosartorya fischeri
NRRL 181]
gi|119412023|gb|EAW21966.1| exosome complex exonuclease Rrp4, putative [Neosartorya fischeri
NRRL 181]
Length = 390
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 46/291 (15%)
Query: 50 LKGHGTSDQK--GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + ATV G V++ NKL+ V+ LRARY PE GD+V+GR++EV +RWK
Sbjct: 73 MRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLRARYIPEIGDLVVGRIVEVQSRRWK 132
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
++I A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV+S DGS L
Sbjct: 133 VDIAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQSVHSDGSASLH 192
Query: 168 ARNQKYGKLERGQLLTVDPY-------------------------------LVKRRKQHF 196
R+ KYGKL G L V +V+ R+Q +
Sbjct: 193 TRSLKYGKLRNGVFLAVTGTGGSGASSSTVKGGPGAGTASAGAMGTSGTGGVVRARRQQW 252
Query: 197 HHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQLIAKCDKNSMDLD 249
G +++I+G NGYIWI +H + + S E++++ +S + D
Sbjct: 253 TVNTANGGGEVNIILGVNGYIWIAKHADGAAAASSTTENVSITRLEEMVSSSIYSSQN-D 311
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
E P + R+ I R+A IRVL + G + E ++ + S ++L++
Sbjct: 312 E-----IPPQTRREIARLAQCIRVLVQGGVRVDEETVMRAYDASLQVDLEV 357
>gi|255945133|ref|XP_002563334.1| Pc20g08110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588069|emb|CAP86140.1| Pc20g08110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 391
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 151/295 (51%), Gaps = 50/295 (16%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + + ATV G V++ NKL+ V LRARY PE GD+V+GR++EV +RWK
Sbjct: 69 MRGHGTYTNPLSTSIIATVAGTVQKTNKLLSVHPLRARYTPEIGDLVVGRIVEVQSRRWK 128
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV AEV+S DGS L
Sbjct: 129 VDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEVQSVHQDGSASLH 188
Query: 168 ARNQKYGKLERGQLLTVDPY-----------------------------------LVKRR 192
R+ KYGKL G L V +V+ R
Sbjct: 189 TRSLKYGKLRNGVFLAVTGTGGSAASSSSVKGGVGAGNSASGSALAAPGGSGTGGVVRSR 248
Query: 193 KQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQLIAKCDKNS 245
+Q + G +++I+G NGYI+I ++ E D + S E++++ +S
Sbjct: 249 RQVWTVPTANGGGEVNIILGVNGYIFISKNPEGADAASSATENVSITRMEEMVSSSIYSS 308
Query: 246 MDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDI 300
+ D P + R+ I R+ IRVL + G + E ++ N S ++L+I
Sbjct: 309 QNDD------IPPQTRREIARLTQCIRVLVQNGVRVDEETVMGAYNASLQVDLEI 357
>gi|164426690|ref|XP_957624.2| hypothetical protein NCU04009 [Neurospora crassa OR74A]
gi|157071436|gb|EAA28388.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 360
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 151/281 (53%), Gaps = 21/281 (7%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT---SDQKGELAAT--VCGVVERINKLIYVRALRARYK 87
++ VT G+ I + ++GHGT S GE A T + G+V R NKL+ VR LRARY
Sbjct: 60 SAIVTPGERI-TTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYT 118
Query: 88 PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTE 147
PE GD+V+GR++EV KRW++++ TQ A L LS++NLP GI R+RT DEL +R+ F E
Sbjct: 119 PEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAE 178
Query: 148 NDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT----VDPYLVKRRKQHFHHLEEYG 203
DLV AEV+ DG L R+ KYGKL G + V R ++ LE
Sbjct: 179 GDLVVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESAN 238
Query: 204 ----IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDK--NSMDLDEQDGTCTP 257
ID+I+G NGY+WI +HVE VV + + + I ++ ++ Q+ P
Sbjct: 239 NGGPIDVILGVNGYVWISKHVEP----VVPEEAKGQTGITNLEEVVSATMYSSQNDRIEP 294
Query: 258 REARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNL 298
R+ I RI + L G + +++ + N + L L
Sbjct: 295 ETMRE-IARIRGVVTALVENGLRVDEDMVTKGYNEAVELAL 334
>gi|29150123|emb|CAD79683.1| related to 3'->5' exoribonuclease [Neurospora crassa]
Length = 387
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 151/281 (53%), Gaps = 21/281 (7%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT---SDQKGELAAT--VCGVVERINKLIYVRALRARYK 87
++ VT G+ I + ++GHGT S GE A T + G+V R NKL+ VR LRARY
Sbjct: 87 SAIVTPGERI-TTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYT 145
Query: 88 PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTE 147
PE GD+V+GR++EV KRW++++ TQ A L LS++NLP GI R+RT DEL +R+ F E
Sbjct: 146 PEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAE 205
Query: 148 NDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT----VDPYLVKRRKQHFHHLEEYG 203
DLV AEV+ DG L R+ KYGKL G + V R ++ LE
Sbjct: 206 GDLVVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESAN 265
Query: 204 ----IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDK--NSMDLDEQDGTCTP 257
ID+I+G NGY+WI +HVE VV + + + I ++ ++ Q+ P
Sbjct: 266 NGGPIDVILGVNGYVWISKHVEP----VVPEEAKGQTGITNLEEVVSATMYSSQNDRIEP 321
Query: 258 REARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNL 298
R+ I RI + L G + +++ + N + L L
Sbjct: 322 ETMRE-IARIRGVVTALVENGLRVDEDMVTKGYNEAVELAL 361
>gi|320166659|gb|EFW43558.1| exosome complex exonuclease RRP4 [Capsaspora owczarzaki ATCC 30864]
Length = 284
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 138/288 (47%), Gaps = 53/288 (18%)
Query: 30 SNPNSCVTVGDTIPVYEDGILKGHGT---------SDQKGELAATVCGVVERINKLIYVR 80
+N V GDTI E ++GHGT ++Q +L A G+VER+NKL+ VR
Sbjct: 22 ANGRHIVCPGDTITT-ETSFMRGHGTYFQQQSKDENEQPAQLTAAYAGIVERVNKLLVVR 80
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
LR RY E GD+V+GRV + KRWK RRR+A DEL
Sbjct: 81 PLRTRYSGEVGDVVVGRVTGLGGKRWK-----------------------RRRSAEDELM 117
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE 200
MR TE D++ AEV+S DG+L L R+ KYGKL G ++V L+KR K HFH L
Sbjct: 118 MRDHLTEGDVISAEVQSLFSDGTLSLHTRSLKYGKLHYGSFMSVPSALIKRCKNHFHDL- 176
Query: 201 EYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMD-LDEQDGTCTPRE 259
G+ +I+G NGYIW+ E + A+ N D ++E T
Sbjct: 177 PCGVTMILGLNGYIWLSE----------------TRATAQMQLNPNDEIEETSFQITSIN 220
Query: 260 ARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSE 307
AR NI RI N I L+ I ++ + SL D+ +L E
Sbjct: 221 ARSNIARIRNCINALASRHMPIYDSTVVYAYDA--SLEFDVKALLQPE 266
>gi|167521940|ref|XP_001745308.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776266|gb|EDQ89886.1| predicted protein [Monosiga brevicollis MX1]
Length = 268
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 120/187 (64%), Gaps = 3/187 (1%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V G TI E G ++GHGT + L A+V GVVE +NK++ VR R RY E GD+V+
Sbjct: 3 VVPGATI-TSETGFMRGHGTFLEDEVLYASVAGVVEHVNKVVSVRPARTRYVGEVGDVVV 61
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR++EV +RWK++I +L LSS+NLP G+ RR++A DEL MR F E DL+ AEV
Sbjct: 62 GRIVEVSQRRWKVDIQSRLHGVLKLSSVNLPGGVLRRKSASDELMMREFFKEGDLISAEV 121
Query: 156 RS-SQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYI 214
+ Q DG+L L R+ +YG+L G + V P L++R K H H L G+ +++G NG+I
Sbjct: 122 QQIYQEDGTLSLHTRSLRYGRLGGGAFVAVSPALIRRSKHHMHVL-PCGVAVVLGTNGFI 180
Query: 215 WIGEHVE 221
WIG +E
Sbjct: 181 WIGPRLE 187
>gi|336466318|gb|EGO54483.1| hypothetical protein NEUTE1DRAFT_124724 [Neurospora tetrasperma
FGSC 2508]
Length = 387
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 151/281 (53%), Gaps = 21/281 (7%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT---SDQKGELAAT--VCGVVERINKLIYVRALRARYK 87
++ VT G+ I + ++GHGT S GE A T + G+V R NKL+ VR LRARY
Sbjct: 87 SAIVTPGERI-TTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYT 145
Query: 88 PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTE 147
PE GD+V+GR++EV KRW++++ TQ A L LS++NLP GI R+RT DEL +R+ F E
Sbjct: 146 PEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAE 205
Query: 148 NDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT----VDPYLVKRRKQHFHHLEEYG 203
DLV AEV+ DG L R+ KYGKL G + V R ++ LE
Sbjct: 206 GDLVVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESAN 265
Query: 204 ----IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDK--NSMDLDEQDGTCTP 257
ID+I+G NGY+WI +HVE VV + + + I ++ ++ Q+ P
Sbjct: 266 NGGPIDVILGVNGYVWISKHVEP----VVPEEAKGQTGITNLEEVVSATMYSSQNDRIEP 321
Query: 258 REARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNL 298
R+ I RI + L G + +++ + N + L L
Sbjct: 322 ETMRE-IARIRGVVTALVENGLRVDEDMVTKGYNEAVELAL 361
>gi|429862582|gb|ELA37224.1| exosome complex exonuclease rrp4 [Colletotrichum gloeosporioides
Nara gc5]
Length = 343
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + E+ ++V G V R NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 68 MRGHGTYITPSTTEIVSSVAGTVTRTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWR 127
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q AIL +S++NLP GI R+RT DEL +RS F E DLV AEV+ DG+ L
Sbjct: 128 VDVGSSQLAILQISAINLPGGILRKRTDTDELQIRSFFAEGDLVVAEVQQLHQDGAASLH 187
Query: 168 ARNQKYGKLERGQL-----LTVDPYLVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEH 219
R+ KYGKL G +V+ ++Q + G + L +G NG+IWI +H
Sbjct: 188 TRSLKYGKLRNGVFCAVTGTGGGGGVVRAKRQQWVMDAARGAAKVHLTLGVNGFIWIAKH 247
Query: 220 VEA 222
VE+
Sbjct: 248 VES 250
>gi|149237360|ref|XP_001524557.1| exosome complex exonuclease RRP4 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452092|gb|EDK46348.1| exosome complex exonuclease RRP4 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 374
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 4/185 (2%)
Query: 33 NSCVTVGDTIPVYEDGI-LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
N+ VT G+ I ED + +KGHGT + ++V G + R+N+L+ V +R +Y+PETG
Sbjct: 61 NAIVTPGELIT--EDPMWMKGHGTYFINDKTYSSVVGNILRVNRLLSVNPIRGKYQPETG 118
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D V+GR+ EV KRWK++I QDA+LML S+NLP GI RR++ DEL MR+ E DL+
Sbjct: 119 DHVVGRITEVANKRWKVDIGTKQDAVLMLGSVNLPGGILRRKSESDELQMRNFLKEGDLL 178
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCN 211
EV++ +G L R+ KYGKL G L + LV + K H + L + +I+G N
Sbjct: 179 NCEVQTIFNNGIASLHTRSLKYGKLRNGIFLKIPSSLVIKSKNHSYDLPG-NVSVILGVN 237
Query: 212 GYIWI 216
GYIW+
Sbjct: 238 GYIWL 242
>gi|46136891|ref|XP_390137.1| hypothetical protein FG09961.1 [Gibberella zeae PH-1]
Length = 331
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT E+ +++ G + + NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 55 MRGHGTYIPADSSEITSSLAGTLTKTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWR 114
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q AIL +S++NLP GI R+RT DEL +RS F E DLV AEV+ DG+ L
Sbjct: 115 VDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLVVAEVQQLHQDGAASLH 174
Query: 168 ARNQKYGKLERGQLLTVDPYLV------KRRKQHFHHLEEYG--IDLIIGCNGYIWIGEH 219
R+ KYGKL G V +R+ + G +D+++G NGYIWI +H
Sbjct: 175 TRSLKYGKLRNGVFAAVTGTGGGGGVVRSKRQVWTMDVANAGGKVDVLLGVNGYIWISKH 234
Query: 220 VEA 222
+E+
Sbjct: 235 IES 237
>gi|408396755|gb|EKJ75909.1| hypothetical protein FPSE_03857 [Fusarium pseudograminearum CS3096]
Length = 331
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT E+ +++ G + + NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 55 MRGHGTYIPADSSEITSSLAGTLTKTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWR 114
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q AIL +S++NLP GI R+RT DEL +RS F E DLV AEV+ DG+ L
Sbjct: 115 VDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLVVAEVQQLHQDGAASLH 174
Query: 168 ARNQKYGKLERGQLLTVDPYLV------KRRKQHFHHLEEYG--IDLIIGCNGYIWIGEH 219
R+ KYGKL G V +R+ + G +D+++G NGYIWI +H
Sbjct: 175 TRSLKYGKLRNGVFAAVTGTGGGGGVVRSKRQVWTMDVANAGGKVDVLLGVNGYIWISKH 234
Query: 220 VEA 222
+E+
Sbjct: 235 IES 237
>gi|367030457|ref|XP_003664512.1| hypothetical protein MYCTH_2307431 [Myceliophthora thermophila ATCC
42464]
gi|347011782|gb|AEO59267.1| hypothetical protein MYCTH_2307431 [Myceliophthora thermophila ATCC
42464]
Length = 367
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 122/199 (61%), Gaps = 11/199 (5%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
++ VT G+ I + ++GHGT + + ++V G V R NKL+ VR LRARY PE
Sbjct: 71 SAVVTPGEVI-TEDPQWMRGHGTYVAPHTTAIVSSVAGTVTRTNKLLSVRPLRARYTPEV 129
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+V+GR++EV KRW++++ TQ A L LS++NLP GI R+RT DEL +R+ F E DL
Sbjct: 130 GDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAEGDL 189
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT-----VDPYLVKRRKQHFHHLEEYG-- 203
+ AEV+ GDG L R+ KYGKL G + +V+ R+Q + G
Sbjct: 190 LVAEVQQLFGDGGAVLHTRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTMDAANGGG 249
Query: 204 -IDLIIGCNGYIWIGEHVE 221
ID+++G NGY+WI +HVE
Sbjct: 250 QIDVVLGVNGYVWISKHVE 268
>gi|350286819|gb|EGZ68066.1| hypothetical protein NEUTE2DRAFT_160508 [Neurospora tetrasperma
FGSC 2509]
Length = 487
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 151/281 (53%), Gaps = 21/281 (7%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGT---SDQKGELAAT--VCGVVERINKLIYVRALRARYK 87
++ VT G+ I + ++GHGT S GE A T + G+V R NKL+ VR LRARY
Sbjct: 187 SAIVTPGERI-TTDPQWMRGHGTYLSSASLGEQAITSSLAGIVTRTNKLLSVRPLRARYT 245
Query: 88 PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTE 147
PE GD+V+GR++EV KRW++++ TQ A L LS++NLP GI R+RT DEL +R+ F E
Sbjct: 246 PEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAE 305
Query: 148 NDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT----VDPYLVKRRKQHFHHLEEYG 203
DLV AEV+ DG L R+ KYGKL G + V R ++ LE
Sbjct: 306 GDLVVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFMAVSGTGGGGGVVRSRRQVWTLESAN 365
Query: 204 ----IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDK--NSMDLDEQDGTCTP 257
ID+I+G NGY+WI +HVE VV + + + I ++ ++ Q+ P
Sbjct: 366 NGGPIDVILGVNGYVWISKHVEP----VVPEEAKGQTGITNLEEVVSATMYSSQNDRIEP 421
Query: 258 REARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNL 298
R+ I RI + L G + +++ + N + L L
Sbjct: 422 ETMRE-IARIRGVVTALVENGLRVDEDMVTKGYNEAVELAL 461
>gi|121704686|ref|XP_001270606.1| exosome complex exonuclease Rrp4, putative [Aspergillus clavatus
NRRL 1]
gi|119398752|gb|EAW09180.1| exosome complex exonuclease Rrp4, putative [Aspergillus clavatus
NRRL 1]
Length = 387
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 155/303 (51%), Gaps = 44/303 (14%)
Query: 35 CVTVGDTIPVYEDGILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
VT GD + + ++GHGT + + ATV G V++ NKL+ V+ LRARY PE GD
Sbjct: 59 IVTPGDVV-TDDPQWMRGHGTYANPLSTSIIATVAGTVQKTNKLLSVQPLRARYTPEIGD 117
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
+V+GR++EV +RWK+++ A L LS++NLP GI RRRT+ DEL +R+ F+E DLV
Sbjct: 118 LVVGRIVEVQSRRWKVDVAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVV 177
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY------------------------- 187
AEV+S DG+ L R+ KYGKL G L V
Sbjct: 178 AEVQSVHSDGAASLHTRSLKYGKLRNGVFLAVAGTGGSGASSSTVKGAAGTGTAPAGTSG 237
Query: 188 ---LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNS----EQL 237
+V+ R+Q + G +++I+G NGYIWI + + S S E++
Sbjct: 238 TGGVVRSRRQVWSISTANGGGDVNIILGVNGYIWIEKLADGAAAASSTTESVSITRMEEM 297
Query: 238 IAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLN 297
++ +S + DE P + R+ I R+A I VL G + + ++ S ++
Sbjct: 298 VSSSIYSSQN-DE-----IPPQTRREIARLAQCIHVLVHGGIRVDEDTVMAAYEASLQVD 351
Query: 298 LDI 300
L++
Sbjct: 352 LEV 354
>gi|380491512|emb|CCF35268.1| exosome complex exonuclease RRP4 [Colletotrichum higginsianum]
Length = 344
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 115/183 (62%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + E+ ++V G V R NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 69 MRGHGTYITPTTTEIVSSVAGTVTRTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWR 128
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q AIL +S++NLP GI R+RT DEL +RS F E DLV AEV+ DG+ L
Sbjct: 129 VDVGSSQLAILQISAINLPGGILRKRTDTDELQIRSFFAEGDLVVAEVQQLHQDGAASLH 188
Query: 168 ARNQKYGKLERGQLLT-----VDPYLVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEH 219
R+ KYGKL G + +V+ ++Q + G + + +G NG+IWI +H
Sbjct: 189 TRSLKYGKLRNGVFVAVTGTGGGGGVVRAKRQQWVMDAARGASKVHVTLGVNGFIWISKH 248
Query: 220 VEA 222
VE+
Sbjct: 249 VES 251
>gi|310792841|gb|EFQ28302.1| exosome complex exonuclease RRP4 [Glomerella graminicola M1.001]
Length = 344
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 151/278 (54%), Gaps = 15/278 (5%)
Query: 28 SKSNPNSCVTVGDTIPVYEDGILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRAR 85
S+ + VT G+ I + ++GHGT + ++ ++V G V R NKL+ VR LRAR
Sbjct: 48 SRGDNYEIVTPGEVI-TDDPQWMRGHGTYITPTTTDIVSSVAGTVTRTNKLLSVRPLRAR 106
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y PE GD+V+GR++EV KRW++++ +Q AIL +S++NLP GI R+RT DEL +RS F
Sbjct: 107 YTPEIGDLVVGRIVEVQAKRWRVDVGSSQLAILQISAINLPGGILRKRTDTDELQIRSFF 166
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT-----VDPYLVKRRKQHFHHLE 200
E DLV AEV+ DG+ L R+ KYGKL G + +V+ ++Q +
Sbjct: 167 AEGDLVVAEVQQLHQDGAASLHTRSLKYGKLRNGVFVAVTGTGGGGGVVRAKRQQWVMDA 226
Query: 201 EYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMD-LDEQDGTCT 256
G + + +G NG+IWI +HVE+ V E + A + D +D +
Sbjct: 227 ARGASKVHVTLGVNGFIWISKHVESDVPESVGLNRMEESVSANVYSSQNDRIDTETMREI 286
Query: 257 PREARQNICRIANAIRVLSRL---GFNITVEVILETVN 291
R + + N +RV L G+ VE+ LE+V+
Sbjct: 287 ARIRSVILALVENGLRVEEDLVVRGYKEAVEMGLESVD 324
>gi|303310595|ref|XP_003065309.1| exosome complex exonuclease RRP4, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240104971|gb|EER23164.1| exosome complex exonuclease RRP4, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320034855|gb|EFW16798.1| exosome complex exonuclease Rrp4 [Coccidioides posadasii str.
Silveira]
Length = 373
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 162/319 (50%), Gaps = 36/319 (11%)
Query: 9 NQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGT------------- 55
N + ++ A R S + + N+ VT G+ + + ++GHGT
Sbjct: 26 NADSDIEMDDATSR-PSKRPRLSKNTIVTPGEVV-TDDPQWMRGHGTFTPAPPGISSTAQ 83
Query: 56 SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQD 115
S + ATV G V + NKL+ V LRARY PE GD+V+GR++EV +RWK+++
Sbjct: 84 SSLSSTIIATVAGTVLKTNKLLSVYPLRARYNPEIGDLVVGRIVEVQSRRWKVDVAAPLL 143
Query: 116 AILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGK 175
A L LS++NLP GI R+RT DEL +RS F E DLV AEV+S DGS L R+ KYGK
Sbjct: 144 ANLPLSAINLPGGILRKRTTADELQIRSFFNEGDLVVAEVQSVHQDGSASLHTRSLKYGK 203
Query: 176 LERGQLLTVDPY----------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEH--V 220
L G L V +V+ R+Q + G I++I+G NGYIWI + V
Sbjct: 204 LRNGIFLAVAGMGGAGVARGTGVVRSRRQVWTVPGANGGSDIEVILGVNGYIWISKRADV 263
Query: 221 EARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFN 280
A D + + E +++ +S + + T R+ I R+A IRVL + G
Sbjct: 264 AAEDSGMGMSITRLEDMVSGTMYSSQNDEISLAT------RREIARLAGCIRVLVQGGIK 317
Query: 281 ITVEVILETVNLSNSLNLD 299
+ + +++ S L L+
Sbjct: 318 VDEDTVMKAYATSLELELE 336
>gi|392862505|gb|EAS36846.2| exosome complex exonuclease Rrp4 [Coccidioides immitis RS]
Length = 373
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 162/319 (50%), Gaps = 36/319 (11%)
Query: 9 NQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGT------------- 55
N + ++ A R S + + N+ VT G+ + + ++GHGT
Sbjct: 26 NADSDIEMDDATSR-PSKRPRLSKNTIVTPGEVV-TDDPQWMRGHGTFTPAPPGFSSTAQ 83
Query: 56 SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQD 115
S + ATV G V + NKL+ V LRARY PE GD+V+GR++EV +RWK+++
Sbjct: 84 SSLSSTIIATVAGTVLKTNKLLSVYPLRARYNPEIGDLVVGRIVEVQSRRWKVDVAAPLL 143
Query: 116 AILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGK 175
A L LS++NLP GI R+RT DEL +RS F E DLV AEV+S DGS L R+ KYGK
Sbjct: 144 ANLPLSAINLPGGILRKRTTADELQIRSFFNEGDLVVAEVQSVHQDGSASLHTRSLKYGK 203
Query: 176 LERGQLLTVDPY----------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEH--V 220
L G L V +V+ R+Q + G I++I+G NGYIWI + V
Sbjct: 204 LRNGIFLAVAGMGGAGVARGTGVVRSRRQVWTVPGANGGSDIEVILGVNGYIWISKRADV 263
Query: 221 EARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFN 280
A D + + E +++ +S + + T R+ I R+A IRVL + G
Sbjct: 264 AAEDSGMGMSITRLEDMVSGTMYSSQNDEISLAT------RREIARLAGCIRVLVQGGIK 317
Query: 281 ITVEVILETVNLSNSLNLD 299
+ + +++ S L L+
Sbjct: 318 VDEDTVMKAYATSLELELE 336
>gi|171677939|ref|XP_001903920.1| hypothetical protein [Podospora anserina S mat+]
gi|170937038|emb|CAP61697.1| unnamed protein product [Podospora anserina S mat+]
Length = 358
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 125/227 (55%), Gaps = 14/227 (6%)
Query: 5 QLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGT--SDQKGEL 62
L F + K+ + LSS + P + ++GHGT +
Sbjct: 37 HLDFRLPRPPLPPKSTHLFQQLSSSQTWSPPAPSSPQTPKW----MRGHGTYIPPSTTNI 92
Query: 63 AATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSS 122
+++ G+ R NKLI V LRARY PE GD+V+GR++EV KRW+++IN Q A L LS+
Sbjct: 93 TSSLAGITTRTNKLISVSPLRARYTPEVGDLVVGRILEVQAKRWRVDINSIQLASLPLSA 152
Query: 123 MNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLL 182
+NLP GI R+RT DEL +R+ F E DLV AEV+ DG L R+ KYGKL G +
Sbjct: 153 INLPGGILRKRTETDELQIRTFFAEGDLVVAEVQQLFQDGGAILHTRSLKYGKLRNGLFV 212
Query: 183 TV-----DPYLVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVE 221
+ +V+ R+Q + + G +D+I+G NGY+WI +HVE
Sbjct: 213 ALSGQGGGSGVVRSRRQVWTMEGQNGGGKMDVILGVNGYVWISKHVE 259
>gi|358395625|gb|EHK45012.1| hypothetical protein TRIATDRAFT_243019 [Trichoderma atroviride IMI
206040]
Length = 317
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 112/183 (61%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + +++ G + R NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 41 MRGHGTYLPLNTSSITSSLAGTLTRTNKLLSVRPLRARYNPEIGDLVVGRIVEVQAKRWR 100
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ Q AIL +S++NLP GI R+RT DEL +RS F E DL+ AEV+ DG+ L
Sbjct: 101 VDVAAAQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLLVAEVQQLHQDGAASLH 160
Query: 168 ARNQKYGKLERGQL----LTVDPYLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIGEH 219
R+ KYGKL G T V R K+ +E ID+++G NGYIWI +H
Sbjct: 161 TRSLKYGKLRNGVFVAVAGTGGGAGVVRSKRQLWTMEAANGGGKIDVLLGVNGYIWISKH 220
Query: 220 VEA 222
+E+
Sbjct: 221 IES 223
>gi|390458444|ref|XP_002743447.2| PREDICTED: exosome complex component RRP4 isoform 2 [Callithrix
jacchus]
Length = 270
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 116/204 (56%), Gaps = 25/204 (12%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ L +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLI-----------------------SLGQGVLVQVSPSLVKRQ 159
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 160 KTHFHDL-PCGASVILGNNGFIWI 182
>gi|118373331|ref|XP_001019859.1| hypothetical protein TTHERM_00586540 [Tetrahymena thermophila]
gi|89301626|gb|EAR99614.1| hypothetical protein TTHERM_00586540 [Tetrahymena thermophila
SB210]
Length = 309
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 140/258 (54%), Gaps = 24/258 (9%)
Query: 34 SCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
+ V GD I E G + GHGT ++ G + ++V G V + NKL+ V L++ Y P+ GDI
Sbjct: 25 NIVLPGDVIKK-EKGFMNGHGTYEENGIIYSSVIGTVVQTNKLLSVSPLKSYYTPQVGDI 83
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
V+GRV+E+ K+WK+EI Q A L L+S +P+ QR +T DELNMR I E DL CA
Sbjct: 84 VVGRVMEIGDKKWKIEIGSNQYASLHLNSTYIPE--QRIKTDEDELNMRQIMKEGDLACA 141
Query: 154 EVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
E+ S D + L R+ KYGKLE G L+ V LVK + HF L + GI++I NG
Sbjct: 142 EIHSINKDKTANLHTRSLKYGKLENGFLVEVFNKLVKTQTNHFKKL-QCGINIIFSHNGK 200
Query: 214 IWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRV 273
IW+ +R+ ++ +Q E + E RQ + I+N +++
Sbjct: 201 IWLNNI--SREGIIKEQ------------------KEVEKKQYSYEERQALSIISNLLKL 240
Query: 274 LSRLGFNITVEVILETVN 291
L + I+ +++ E N
Sbjct: 241 LDQQNIKISTDLLDELYN 258
>gi|346974759|gb|EGY18211.1| exosome complex exonuclease RRP4 [Verticillium dahliae VdLs.17]
Length = 354
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 109/185 (58%), Gaps = 12/185 (6%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT S G + ++V G + R NKL+ VR LRARY PE GD+V+GR++EV PKRW+
Sbjct: 69 MRGHGTYVSAADGSIVSSVAGTITRTNKLLSVRPLRARYTPEIGDLVVGRIVEVQPKRWR 128
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q A L +S++NLP GI R+RT DEL +RS F E DL+ AEV++ +G L
Sbjct: 129 VDVGASQLATLQISAINLPGGILRKRTDTDELQIRSFFAEGDLLVAEVQTLHAEGGASLH 188
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID----------LIIGCNGYIWIG 217
R+ +YGKL G V + + +D + +G NGYIWI
Sbjct: 189 TRSLRYGKLRNGLFCAVSGTGGGGAGVVRAKRQSFAVDASARGADQIEVTLGVNGYIWIS 248
Query: 218 EHVEA 222
+ V+A
Sbjct: 249 KLVKA 253
>gi|302421502|ref|XP_003008581.1| exosome complex exonuclease RRP4 [Verticillium albo-atrum VaMs.102]
gi|261351727|gb|EEY14155.1| exosome complex exonuclease RRP4 [Verticillium albo-atrum VaMs.102]
Length = 353
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT S G + ++V G + R NKL+ VR LRARY PE GD+V+GR++EV PKRW+
Sbjct: 68 MRGHGTYVSAADGSIVSSVAGTITRTNKLLSVRPLRARYTPEIGDLVVGRIVEVQPKRWR 127
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q A L +S++NLP GI R+RT DEL +RS F E DL+ AEV++ +G L
Sbjct: 128 VDVGASQLATLQISAINLPGGILRKRTDTDELQIRSFFAEGDLLVAEVQTLHAEGGASLH 187
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID----------LIIGCNGYIWIG 217
R+ +YGKL G V + + +D + +G NGYIWI
Sbjct: 188 TRSLRYGKLRNGLFCAVSGTGGGGAGVVRAKRQSFAVDASARGADQIEVTLGVNGYIWIS 247
Query: 218 EHVEARDKMVVDQG 231
+ V+A + G
Sbjct: 248 KLVKADGESAAGAG 261
>gi|367041025|ref|XP_003650893.1| hypothetical protein THITE_2042530 [Thielavia terrestris NRRL 8126]
gi|346998154|gb|AEO64557.1| hypothetical protein THITE_2042530 [Thielavia terrestris NRRL 8126]
Length = 353
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 113/182 (62%), Gaps = 10/182 (5%)
Query: 50 LKGHGTSDQKGE--LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT G + ++V G + R NKL+ VR LRARY PE GD+V+GR++EV +RW+
Sbjct: 74 MRGHGTYATPGTATIVSSVAGTISRTNKLLSVRPLRARYTPEVGDLVVGRIVEVQARRWR 133
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ TQ A L LS++NLP GI R+RT DEL +R+ F E DL+ AEV+ DG L
Sbjct: 134 VDVGSTQLAALPLSAINLPGGILRKRTETDELQIRTFFAEGDLLVAEVQQLFADGGAVLH 193
Query: 168 ARNQKYGKLERGQLLT-----VDPYLVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEH 219
R+ KYGKL G + +V+ R+Q + G ID+++G NGY+WI +H
Sbjct: 194 TRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTMEAANGGGQIDVVLGVNGYVWISKH 253
Query: 220 VE 221
VE
Sbjct: 254 VE 255
>gi|440634112|gb|ELR04031.1| hypothetical protein GMDG_06542 [Geomyces destructans 20631-21]
Length = 344
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 151/277 (54%), Gaps = 16/277 (5%)
Query: 22 RLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELA--ATVCGVVERINKLIYV 79
R + + ++ S VT G+ + + ++GHGT + A ATV G +++ NKL+ V
Sbjct: 38 RPKKRARRAGSTSIVTPGEVV-TDDPQWMRGHGTYVEPATSAILATVAGTIQKTNKLLSV 96
Query: 80 RALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDEL 139
R LRARY PE GD+V+GR+I+V +RW+++I A L LS++NLP GI R+RT DEL
Sbjct: 97 RPLRARYTPEIGDLVVGRIIDVQSRRWRVDIGAPLLAALPLSAINLPGGILRKRTETDEL 156
Query: 140 NMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQL-----LTVDPYLVKRRKQ 194
+R+ +E DL+ EV+S DGS L R+ KYGKL G + +V+ R+Q
Sbjct: 157 QIRTFLSEGDLLVCEVQSLFHDGSASLHTRSLKYGKLRNGVFVSVAGMGGGGGVVRSRRQ 216
Query: 195 HFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQ 251
+ G +D+I+G NGYIWI +H++ D+ D+ I + +++ +
Sbjct: 217 VWTVETANGGGPVDVILGVNGYIWISKHIKTADE---DKAEVGITRIEESTNSTVYSSQN 273
Query: 252 DGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
D E R+ I RI + L G + E++++
Sbjct: 274 DEIAA--ETRREIARIRGVVASLVEAGMKVDEEMLMK 308
>gi|323456334|gb|EGB12201.1| hypothetical protein AURANDRAFT_4556, partial [Aureococcus
anophagefferens]
Length = 170
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 111/170 (65%), Gaps = 3/170 (1%)
Query: 50 LKGHGTSDQKGELAATVCGV--VERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT +G+ + CG +ER+NKL+ V +R RY E GD+V+G V+E+ K WK
Sbjct: 1 VRGHGTYVCRGDTSLVSCGAGYLERVNKLVSVVPVRGRYGGEVGDLVVGTVVEIAHKAWK 60
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ ++ A L LSS+ LP+ QR RT D L MR+++ E D+VC EV + GDGS+ L
Sbjct: 61 VDVGASRLATLALSSVTLPNDAQRIRTHADALAMRALYAEGDVVCCEVMAVHGDGSVHLH 120
Query: 168 ARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE-EYGIDLIIGCNGYIWI 216
R+ +YGKL G+L+ V+ +LV+R +HF L + ++L +G NG +W+
Sbjct: 121 TRSNRYGKLGNGRLVAVNSHLVRRLPRHFVALPRDVDVELAVGNNGVVWV 170
>gi|169622808|ref|XP_001804812.1| hypothetical protein SNOG_14630 [Phaeosphaeria nodorum SN15]
gi|111056702|gb|EAT77822.1| hypothetical protein SNOG_14630 [Phaeosphaeria nodorum SN15]
Length = 337
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 165/309 (53%), Gaps = 48/309 (15%)
Query: 30 SNPNSCVTVGDTIPVYEDGILKGHGTSDQKGE--LAATVCGVVERINKLIYVRALRARYK 87
S N+ VT G+ I + ++GHGT GE + +TV G + + NKL+ V+ LRARY+
Sbjct: 35 SQTNAIVTPGEHI-TSDPQWMRGHGTYIPAGETTIISTVAGHMHKTNKLLSVQPLRARYQ 93
Query: 88 PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTE 147
PE GD+V+GR++ V K+W ++I A L LSS+NLP GI RRRTAVDELN+R+ F+E
Sbjct: 94 PEIGDLVVGRIVSVQTKKWSVDIAAPMLAGLPLSSINLPGGILRRRTAVDELNIRTFFSE 153
Query: 148 NDLVCAEVRSSQGDGSLQLQARNQKYGKLER----------GQLLTVDPYLVKRRKQHFH 197
DL+ AEV+S D + L R+ KYGKL G +L+ +V+ R+Q F
Sbjct: 154 GDLLVAEVQSLHQDNTASLHTRSLKYGKLRNGLFTSLSGAGGGILSRRGGVVRSRRQVFT 213
Query: 198 HLEEYG-IDLIIGCNGYIWIGEHVEARDKMVV---DQGSNSEQLIAKCDKNSMDLDEQDG 253
G ID+++G NGYI+I +H++ + + + D+G SE L + Q+
Sbjct: 214 LNTAAGEIDVVLGVNGYIFISKHIKPAEDVSINRLDEGV-SETLYSS----------QND 262
Query: 254 TCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVA 313
P R+ I R+++ I+ L G + ++I+ + Y
Sbjct: 263 DIEPAVMRE-ITRVSSLIKGLVACGMRVDEDMIV-------------------KVYEGAV 302
Query: 314 ESEAERRSL 322
E EAE RSL
Sbjct: 303 EMEAEERSL 311
>gi|340522359|gb|EGR52592.1| predicted protein [Trichoderma reesei QM6a]
Length = 332
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 111/183 (60%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + +++ G + R NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 56 MRGHGTYVPPNTTNITSSLAGTLTRTNKLLSVRPLRARYNPEIGDLVVGRIVEVQAKRWR 115
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ Q AIL +S++NLP GI R+RT DEL +RS F E DL+ AEV+ DG+ L
Sbjct: 116 VDVAAAQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLLVAEVQQLHQDGAASLH 175
Query: 168 ARNQKYGKLER----GQLLTVDPYLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIGEH 219
R+ KYGKL T V R K+ +E ID+++G NGYIWI +H
Sbjct: 176 TRSLKYGKLRNGVFVAVGGTGGGAGVVRSKRQLWTMETANGGGKIDVLLGVNGYIWISKH 235
Query: 220 VEA 222
VE+
Sbjct: 236 VES 238
>gi|294897174|ref|XP_002775860.1| exosome complex exonuclease rrp4, putative [Perkinsus marinus ATCC
50983]
gi|239882213|gb|EER07676.1| exosome complex exonuclease rrp4, putative [Perkinsus marinus ATCC
50983]
Length = 332
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 148/282 (52%), Gaps = 35/282 (12%)
Query: 36 VTVGDTIPVYEDGILKGHG--TSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
V GD I + G LKG G G+L ATV G++ER+NKL+Y+R L++RY E GD+
Sbjct: 38 VLPGDVINA-DKGYLKGRGLLVDPVDGKLVATVRGILERVNKLLYIRPLKSRYTGEVGDV 96
Query: 94 VIGRVIEVVPKRWKLEINFTQD-AILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
++GRV EV RW L+ A L + +NLP G QRRRT D +NMR++FTE DL+
Sbjct: 97 IVGRVAEVGGDRWMLDYGGGGSLAALPIGGVNLPQGEQRRRTDTDRMNMRAMFTEGDLLS 156
Query: 153 AEVRSSQGD-GSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQH--------FHHLEEYG 203
AE++ D G + L R+ KYGKL GQ++ V LV+R+ H F HL+
Sbjct: 157 AEIQKVVSDSGDVILHTRSAKYGKLYNGQMVRVSSSLVRRQSSHIVENLPAPFDHLQ--- 213
Query: 204 IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL-IAKCDKNSMDLDEQDGTCTPREARQ 262
+++G NG+IW+G M Q + + + + +K ++D+ +RQ
Sbjct: 214 --VVLGLNGWIWVG--------MKPKQSGHIQSINFTQTEKGFQEVDQ--------ASRQ 255
Query: 263 NICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDML 304
I + I L +T++ +L V+ + L+ D L
Sbjct: 256 AIALLCACIEALGSSFSEVTIDSMLGVVDAARRRGLEGKDFL 297
>gi|402896282|ref|XP_003911233.1| PREDICTED: exosome complex component RRP4 isoform 2 [Papio anubis]
Length = 267
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 114/204 (55%), Gaps = 28/204 (13%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPAARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLIS--------------------------GVLVQVSPSLVKRQ 156
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 157 KTHFHDL-PCGASVILGNNGFIWI 179
>gi|189188216|ref|XP_001930447.1| exosome component 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972053|gb|EDU39552.1| exosome component 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 348
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 17/209 (8%)
Query: 28 SKSNPNSCVTVGDTIPVYEDGILKGHGT-----SDQKGELAATVCGVVERINKLIYVRAL 82
+ S + VT G+ I + ++GHGT + +TV G +++ NKL+ V+ L
Sbjct: 35 ATSTSKAIVTPGEHI-TSDPQWMRGHGTYIPSIPPSSTTIISTVAGTLQKTNKLLSVQPL 93
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
RARY+PE GD+V+GR++ V K+W ++I A L LSS+NLP G+ RRRT VDELN+R
Sbjct: 94 RARYQPEIGDLVVGRIVTVGTKKWNVDIAAPMLANLPLSSINLPGGVLRRRTTVDELNIR 153
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLER----------GQLLTVDPYLVKRR 192
+ F E DL+ AEV+S DG+ L R+ KYGKL G +L+ +V+ R
Sbjct: 154 TFFQEGDLLVAEVQSLHQDGTASLHTRSLKYGKLRNGLFTSLTGAGGGILSRKGGVVRSR 213
Query: 193 KQHFHHLEEYG-IDLIIGCNGYIWIGEHV 220
+Q F G ID+++G NGYI+I +H+
Sbjct: 214 RQVFTLNTAAGEIDIVLGVNGYIFISKHI 242
>gi|330912604|ref|XP_003296005.1| hypothetical protein PTT_04382 [Pyrenophora teres f. teres 0-1]
gi|311332190|gb|EFQ95897.1| hypothetical protein PTT_04382 [Pyrenophora teres f. teres 0-1]
Length = 348
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 150/279 (53%), Gaps = 27/279 (9%)
Query: 28 SKSNPNSCVTVGDTIPVYEDGILKGHGT-----SDQKGELAATVCGVVERINKLIYVRAL 82
+ S + VT G+ I + ++GHGT + +TV G +++ NKL+ V+ L
Sbjct: 35 ATSTSKAIVTPGEHI-TSDPQWMRGHGTYIPSIPPSSTTIISTVAGTLQKTNKLLSVQPL 93
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
RARY+PE GD+V+GR++ V K+W ++I A L LSS+NLP G+ RRRT VDELN+R
Sbjct: 94 RARYQPEIGDLVVGRIMTVGTKKWNVDIAAPMLANLPLSSINLPGGVLRRRTTVDELNIR 153
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLER----------GQLLTVDPYLVKRR 192
+ F E DL+ AEV+S DG+ L R+ KYGKL G +L+ +V+ R
Sbjct: 154 TFFQEGDLLVAEVQSLHQDGTASLHTRSLKYGKLRNGLFTSLTGAGGGILSRKGGVVRSR 213
Query: 193 KQHFHHLEEYG-IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMD--LD 249
+Q F G ID+++G NGYI+I +H + E I + D++ +
Sbjct: 214 RQVFTLNTAAGEIDIVLGVNGYIFISKH-------ITTNADPKEMGINRLDESVTETLYS 266
Query: 250 EQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
Q+ P R+ I R++ IR L G + ++I++
Sbjct: 267 SQNDDIEPAVMRE-ITRVSTLIRGLVACGAKVDEDMIVK 304
>gi|239613289|gb|EEQ90276.1| exosome complex exonuclease Rrp4 [Ajellomyces dermatitidis ER-3]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 24/255 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V++ NKL+ V+ LRARY PE GD+VIGR++EV +RWK+++ A L LS++
Sbjct: 105 ATVAGTVQKTNKLLSVQPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPLLAQLPLSAI 164
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G L
Sbjct: 165 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLA 224
Query: 184 VDPY-----------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V +V+ R+Q + +G ID+++G NGYIWI +HV
Sbjct: 225 VGGMSAAGGVVRGSGVVRSRRQVWTFPASHGAGEIDVVLGVNGYIWISKHVGDGAVGGAA 284
Query: 230 QGSNS----EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
G S E++++ +S +++ G T RE I R+ IRVL G + +
Sbjct: 285 GGDVSITRLEEMVSSAIYSSQ--NDEIGLATRRE----IARLCGCIRVLVEGGVKVDEDT 338
Query: 286 ILETVNLSNSLNLDI 300
+++ S + L++
Sbjct: 339 VMKAYRASLEIELEV 353
>gi|358389591|gb|EHK27183.1| hypothetical protein TRIVIDRAFT_33478 [Trichoderma virens Gv29-8]
Length = 331
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 111/183 (60%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + +++ G + R NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 55 MRGHGTYVPPNTTSITSSLAGTLTRTNKLLSVRPLRARYNPEIGDLVVGRIVEVQAKRWR 114
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ Q AIL +S++NLP GI R+RT DEL +RS F E DL+ AEV+ DG+ L
Sbjct: 115 VDVAAAQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLLVAEVQQLHQDGAASLH 174
Query: 168 ARNQKYGKLER----GQLLTVDPYLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIGEH 219
R+ KYGKL T V R K+ +E ID+++G NGYIWI +H
Sbjct: 175 TRSLKYGKLRNGVFVAVGGTGGGGGVVRSKRQLWTMETSNGGSKIDVLLGVNGYIWISKH 234
Query: 220 VEA 222
+E+
Sbjct: 235 IES 237
>gi|327357351|gb|EGE86208.1| exosome complex exonuclease Rrp4 [Ajellomyces dermatitidis ATCC
18188]
Length = 373
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 24/255 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V++ NKL+ V+ LRARY PE GD+VIGR++EV +RWK+++ A L LS++
Sbjct: 94 ATVAGTVQKTNKLLSVQPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPLLAQLPLSAI 153
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G L
Sbjct: 154 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLA 213
Query: 184 VDPY-----------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V +V+ R+Q + +G ID+++G NGYIWI +HV
Sbjct: 214 VGGMSAAGGVVRGSGVVRSRRQVWTFPASHGAGEIDVVLGVNGYIWISKHVGDGAVGGAA 273
Query: 230 QGSNS----EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
G S E++++ +S +++ G T RE I R+ IRVL G + +
Sbjct: 274 GGDVSITRLEEMVSSAIYSSQ--NDEIGLATRRE----IARLCGCIRVLVEGGVKVDEDT 327
Query: 286 ILETVNLSNSLNLDI 300
+++ S + L++
Sbjct: 328 VMKAYRASLEIELEV 342
>gi|261188483|ref|XP_002620656.1| exosome complex exonuclease Rrp4 [Ajellomyces dermatitidis
SLH14081]
gi|239593140|gb|EEQ75721.1| exosome complex exonuclease Rrp4 [Ajellomyces dermatitidis
SLH14081]
Length = 373
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 141/255 (55%), Gaps = 24/255 (9%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
ATV G V++ NKL+ V+ LRARY PE GD+VIGR++EV +RWK+++ A L LS++
Sbjct: 94 ATVAGTVQKTNKLLSVQPLRARYTPEIGDLVIGRIVEVQSRRWKVDVAAPLLAQLPLSAI 153
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
NLP GI R+RT DEL +RS F E DL+ AEV++ DG+ L R+ KYGKL G L
Sbjct: 154 NLPGGILRKRTTADELQIRSFFNEGDLLVAEVQAVHQDGAASLHTRSLKYGKLRNGVFLA 213
Query: 184 VDPY-----------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEARDKMVVD 229
V +V+ R+Q + +G ID+++G NGYIWI +HV
Sbjct: 214 VGGMSAAGGVVRGSGVVRSRRQVWTFPASHGAGEIDVVLGVNGYIWISKHVGDGAVGGAA 273
Query: 230 QGSNS----EQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
G S E++++ +S +++ G T RE I R+ IRVL G + +
Sbjct: 274 GGDVSITRLEEMVSSAIYSSQ--NDEIGLATRRE----IARLCGCIRVLVEGGVKVDEDT 327
Query: 286 ILETVNLSNSLNLDI 300
+++ S + L++
Sbjct: 328 VMKAYRASLEIELEV 342
>gi|258566429|ref|XP_002583959.1| hypothetical protein UREG_06926 [Uncinocarpus reesii 1704]
gi|237907660|gb|EEP82061.1| hypothetical protein UREG_06926 [Uncinocarpus reesii 1704]
Length = 301
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 19/227 (8%)
Query: 14 VRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGT-----SDQKGELAATVCG 68
+ +E A S + + + VT G+ + + ++GHGT S + ATV G
Sbjct: 31 IEMEDATTSRPSKRPRLSKGTIVTPGEVV-TDDPQWMRGHGTFTPATSSVPSTIIATVAG 89
Query: 69 VVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDG 128
V + NKL+ V LRARY PE GD+VIGR++EV +RWK+++ A L LS++NLP G
Sbjct: 90 TVLKTNKLLSVYPLRARYNPEIGDLVIGRIVEVQSRRWKVDVAAPLLANLPLSAINLPGG 149
Query: 129 IQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY- 187
I R+RT DEL +RS F E DL+ AEV+S DGS L R+ KYGKL G L V
Sbjct: 150 ILRKRTTADELQIRSFFNEGDLLVAEVQSVHQDGSASLHTRSLKYGKLRNGIFLAVAGMG 209
Query: 188 ---------LVKRRKQHFHHLEEYG---IDLIIGCNGYIWIGEHVEA 222
+V+ R+Q + G I++I+G NGYIWI + +A
Sbjct: 210 GAGVVRGTGVVRSRRQVWTVPGANGGSDIEVILGVNGYIWISKRADA 256
>gi|297270043|ref|XP_002800006.1| PREDICTED: exosome complex exonuclease RRP4 isoform 3 [Macaca
mulatta]
Length = 267
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 114/204 (55%), Gaps = 28/204 (13%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDT+ + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPAARKPLSERLGRDTKKHLVVPGDTV-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLIS--------------------------GVLVQVSPSLVKRQ 156
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 157 KTHFHDL-PCGASVILGNNGFIWI 179
>gi|322698336|gb|EFY90107.1| putative 3'->5' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 349
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 10/181 (5%)
Query: 52 GHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
GHGT + +++ G + + NKL+ VR LRARY PE GD+V+GR+ EV KRW+++
Sbjct: 75 GHGTYLPASTQSITSSLAGTLTKTNKLLSVRPLRARYTPEIGDLVVGRITEVQAKRWRVD 134
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
+ +Q AIL +S++NLP GI R+RT DEL +RS F+E DLV AEV+ DG+ L R
Sbjct: 135 VAASQLAILQISAINLPGGILRKRTETDELQIRSFFSEGDLVVAEVQQLHQDGAASLHTR 194
Query: 170 NQKYGKLERGQL----LTVDPYLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIGEHVE 221
+ KYGKL G T V R K+ +E ID+++G NGYIWI +HV+
Sbjct: 195 SLKYGKLRNGVFVSVSGTGGGGGVVRSKRQVWTMEGANAAGKIDVLLGVNGYIWISKHVD 254
Query: 222 A 222
+
Sbjct: 255 S 255
>gi|401417760|ref|XP_003873372.1| putative exosome complex exonuclease [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489602|emb|CBZ24859.1| putative exosome complex exonuclease [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 307
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 125/217 (57%), Gaps = 27/217 (12%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ A + G +E +++I V+ L RY+PE GD+V+GR++EV +W++++N TQ AI++
Sbjct: 52 GEIVAAISGHIEVTDRVISVKGLLPRYQPEIGDVVVGRILEVTGNKWQVDVNSTQTAIML 111
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGKLER 178
LSS+ P GI RRR DEL MR IF ++DLV AEV+ DG + L R +KYG+L
Sbjct: 112 LSSVTEPGGILRRRGRGDELGMRQIFDQDDLVAAEVQRISPDGVMSLHTRAAEKYGRLSG 171
Query: 179 -GQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL 237
G L++V P LVKR K F L +Y LIIG NG IW
Sbjct: 172 LGILVSVRPSLVKRAKHQFVELADYSTQLIIGMNGNIW---------------------- 209
Query: 238 IAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVL 274
I+ ++ D +E + +ARQN+ R+AN I+ +
Sbjct: 210 ISSMQPSASDAEETEHAA---DARQNVARVANCIKTM 243
>gi|114627220|ref|XP_001165883.1| PREDICTED: uncharacterized protein LOC464801 isoform 1 [Pan
troglodytes]
gi|332255332|ref|XP_003276786.1| PREDICTED: exosome complex component RRP4 isoform 2 [Nomascus
leucogenys]
gi|397503634|ref|XP_003822424.1| PREDICTED: exosome complex component RRP4 [Pan paniscus]
gi|194383720|dbj|BAG59218.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 28/213 (13%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLIS--------------------------GVLVQVSPSLVKRQ 156
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +++
Sbjct: 157 KTHFHDL-PCGASVILGNNGFIWIYPTPEHKEE 188
>gi|297685560|ref|XP_002820353.1| PREDICTED: exosome complex component RRP4 isoform 2 [Pongo abelii]
Length = 267
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 28/213 (13%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRDFLQEGDLIS--------------------------GVLVQVSPSLVKRQ 156
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +++
Sbjct: 157 KTHFHDL-PCGASVILGNNGFIWIYPTPEHKEE 188
>gi|342879046|gb|EGU80323.1| hypothetical protein FOXB_09250 [Fusarium oxysporum Fo5176]
Length = 331
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 113/183 (61%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + +++ G + + NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 55 MRGHGTYVPSGSSSIKSSLAGTLTKTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWR 114
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q AIL +S++NLP GI R+RT DEL +RS F E DLV AEV+ DG+ L
Sbjct: 115 VDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLVVAEVQQLHQDGAASLH 174
Query: 168 ARNQKYGKLERGQLLTVDPYLV------KRRKQHFHHLEEYG--IDLIIGCNGYIWIGEH 219
R+ KYGKL G + V +R+ + G +D+++G NGYIWI +H
Sbjct: 175 TRSLKYGKLRNGVFVAVTGTGGGGGVVRSKRQVWTMDVANAGGKVDVLLGVNGYIWISKH 234
Query: 220 VEA 222
+E+
Sbjct: 235 IES 237
>gi|426363336|ref|XP_004048797.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP4
[Gorilla gorilla gorilla]
Length = 300
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 126/220 (57%), Gaps = 9/220 (4%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++ S + +A+ G VE
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRYGPYSXSEVMVASPKVGAVED 62
Query: 73 INKLIYVRA-------LRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNL 125
+++L+ + L RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNL
Sbjct: 63 VSRLVCLLTDGXTPCVLSFRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNL 122
Query: 126 PDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD 185
P G RRR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V
Sbjct: 123 PGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVS 182
Query: 186 PYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
P LV+R+K H H L G +I+G NG+IWI E +++
Sbjct: 183 PSLVRRQKTHLHDL-PCGASVILGNNGFIWIYPTPEHKEE 221
>gi|322710146|gb|EFZ01721.1| putative 3'->5' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT + +++ G + + NKL+ VR LRARY PE GD+V+GR+ EV KRW+
Sbjct: 71 MRGHGTYLPASTQSITSSLAGTLTKTNKLLSVRPLRARYTPEIGDLVVGRITEVQAKRWR 130
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q AIL +S++NLP GI R+RT DEL +RS F+E DLV AEV+ DG+ L
Sbjct: 131 VDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFSEGDLVVAEVQQLHQDGAASLH 190
Query: 168 ARNQKYGKLERGQL----LTVDPYLVKRRKQHFHHLEEYG----IDLIIGCNGYIWIGEH 219
R+ KYGKL G T V R K+ +E ID+++G NGYIWI +H
Sbjct: 191 TRSLKYGKLRNGVFVSVSGTGGGGGVVRSKRQVWTMEGANAAGKIDVLLGVNGYIWISKH 250
Query: 220 VEA 222
++
Sbjct: 251 LDG 253
>gi|389634805|ref|XP_003715055.1| exosome component 2 [Magnaporthe oryzae 70-15]
gi|351647388|gb|EHA55248.1| exosome component 2 [Magnaporthe oryzae 70-15]
Length = 361
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 112/199 (56%), Gaps = 27/199 (13%)
Query: 50 LKGHGTSDQKGELA--ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT A ++V G V R NKL+ VR +RARY PE GD+V+GR++EV +RWK
Sbjct: 60 MRGHGTYTFPASPAIMSSVAGTVSRTNKLLSVRPMRARYTPEVGDLVVGRIVEVQARRWK 119
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ Q A L LS++NLP GI R+RT DEL +RS F E DL+ AEV+ GDG L
Sbjct: 120 VDVGGVQLAALPLSAINLPGGILRKRTETDELQIRSFFAEGDLLVAEVQQLFGDGGASLH 179
Query: 168 ARNQKYGKLERG------------------QLLTVD-------PYLVKRRKQHFHHLEEY 202
R+ +YGKL G Q+ T++ ++++
Sbjct: 180 TRSLRYGKLRNGVFAAVSGTGGGGVVRARRQVWTMEIASTGTSATWQDKQQKAASSQAPP 239
Query: 203 GIDLIIGCNGYIWIGEHVE 221
ID+++G NGY+WI +HVE
Sbjct: 240 SIDVVLGVNGYVWISKHVE 258
>gi|414879734|tpg|DAA56865.1| TPA: hypothetical protein ZEAMMB73_993215 [Zea mays]
Length = 136
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 13/144 (9%)
Query: 184 VDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDK 243
V PYLVKR+KQHFHHLE+Y +DLI+ CNG+IW+GEHV +K K
Sbjct: 2 VAPYLVKRKKQHFHHLEKYNVDLILDCNGFIWVGEHVVVGEK-------------PKTTG 48
Query: 244 NSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDM 303
+ TP E R++ICR+AN++RVLS LGF +TVE+I+ET+ S S N++I+DM
Sbjct: 49 GQQGFSTEAENFTPLETRKHICRLANSVRVLSALGFTLTVELIIETMEASVSSNVEINDM 108
Query: 304 LGSEFYVLVAESEAERRSLSKRKR 327
LG+EFYV AE EA+RR+ RK+
Sbjct: 109 LGAEFYVQTAEREAKRRADLLRKK 132
>gi|340054841|emb|CCC49146.1| putative ribosomal RNA processing protein 4 [Trypanosoma vivax
Y486]
Length = 301
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 150/279 (53%), Gaps = 23/279 (8%)
Query: 51 KGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEI 110
K + GE+ + + G+VE ++++ V+ + +RY E GDIVIGRV EV RW ++I
Sbjct: 43 KAAAAQEGGGEIVSAINGIVEITDRVVSVKGMASRYNAEVGDIVIGRVKEVNGNRWLVDI 102
Query: 111 NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN 170
QDA+++LS++ P GI RR+ DEL MR+IF +++L+ AEV+ DG + L R+
Sbjct: 103 GAFQDAVMLLSNVTEPGGILRRKGRSDELTMRNIFDQSELIVAEVQRVSVDGIVFLHTRS 162
Query: 171 -QKYGKLER-GQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
++YG+L G L+ V P LVKR K HF ++ I L++G NG I++ + +K+
Sbjct: 163 GERYGRLNNVGVLVLVSPALVKRVKHHFMTIDSLHIGLVVGTNGAIFV-----SGEKITE 217
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
+ SN + +++ +D+D R+N+ R+AN I+V+ F I I
Sbjct: 218 ENSSN------RLNQHDVDVD----------IRRNVTRVANCIKVMGEAQFPIFDRTIDA 261
Query: 289 TVNLSNSLNLDIHDMLGSEFYVLVAESEAERRSLSKRKR 327
V S L D+L S L+ + E KR R
Sbjct: 262 AVKTSIDFGLGPFDILSSSNRGLITTTVLETMVSRKRMR 300
>gi|451847300|gb|EMD60608.1| hypothetical protein COCSADRAFT_40237 [Cochliobolus sativus ND90Pr]
Length = 344
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 17/207 (8%)
Query: 30 SNPNSCVTVGDTIPVYEDGILKGHGT---SDQKGE--LAATVCGVVERINKLIYVRALRA 84
S+ + VT G+ I + ++GHGT S G + +TV G + + NKL+ V+ LRA
Sbjct: 36 SSSKAIVTPGEHI-TSDPQWMRGHGTYIPSQPAGSTTIISTVAGTLHKTNKLLSVQPLRA 94
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY+PE GD+V+GR++ V K+W ++I A L LSS+NLP G+ RRRT VDELN+R+
Sbjct: 95 RYQPEIGDLVVGRIMTVGTKKWNVDIAAPMLANLPLSSINLPGGVLRRRTTVDELNIRTF 154
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----------LVKRRKQ 194
F E DL+ AEV+S DG+ L R+ KYGKL G ++ +V+ R+Q
Sbjct: 155 FQEGDLLVAEVQSLHQDGTASLHTRSLKYGKLRNGVFTSITGAGGGILSRKGGVVRSRRQ 214
Query: 195 HFHHLEEYG-IDLIIGCNGYIWIGEHV 220
F G ID+I+G NGY++I +H+
Sbjct: 215 VFTLNTAAGEIDIILGVNGYVFICKHI 241
>gi|167389149|ref|XP_001733444.1| exosome complex exonuclease RRP4 [Entamoeba dispar SAW760]
gi|165897725|gb|EDR24803.1| exosome complex exonuclease RRP4, putative [Entamoeba dispar
SAW760]
Length = 197
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
N N+ VT GD I YE+G + G+G + E + V G VERINKL+ V +R+RY
Sbjct: 7 NDNNHVTPGDEI-FYEEGCIPGNGIRIEDNEFISCVHGTVERINKLVCVNPIRSRYCGNV 65
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+V+GR++ V WK++IN + +L +SS+NLPDGIQRRRT +D LN+++ F N+L
Sbjct: 66 GDVVVGRIVSVGVGFWKVDINGKNNGLLQISSINLPDGIQRRRTEIDNLNIKTFFDVNEL 125
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLL 182
+CAEV+S G +QL RN++YGKL G L+
Sbjct: 126 ICAEVQSMNGQSCIQLHTRNERYGKLNEGILI 157
>gi|146081162|ref|XP_001464184.1| putative exosome complex exonuclease [Leishmania infantum JPCM5]
gi|398012359|ref|XP_003859373.1| exosome complex exonuclease, putative [Leishmania donovani]
gi|134068275|emb|CAM66561.1| putative exosome complex exonuclease [Leishmania infantum JPCM5]
gi|322497588|emb|CBZ32661.1| exosome complex exonuclease, putative [Leishmania donovani]
Length = 307
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 130/246 (52%), Gaps = 27/246 (10%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ A + G +E ++I V+ L RY+PE GD+V+GR++EV +W++++N TQ AI++
Sbjct: 52 GEIVAAISGHIEVTERVISVKGLVPRYQPEIGDVVVGRILEVSGNKWQVDVNSTQTAIML 111
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGKLE- 177
LSS+ P GI RRR DEL MR IF ++DLV AEV+ DG + L R +KYG L
Sbjct: 112 LSSVTEPGGILRRRGRGDELGMRQIFDQDDLVAAEVQRISPDGVMSLHTRAAEKYGLLSG 171
Query: 178 RGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL 237
G L+TV P LVKR K F L Y LIIG NG IW
Sbjct: 172 PGILVTVRPSLVKRAKHQFAELANYRTQLIIGMNGNIW---------------------- 209
Query: 238 IAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLN 297
I ++ D +E + +ARQN+ R+AN I+ L I I +V S
Sbjct: 210 ICSLQPSASDAEETEHAT---DARQNVARVANCIKALGAAQVQIHPASIEASVAASLEAG 266
Query: 298 LDIHDM 303
L + D+
Sbjct: 267 LSVFDV 272
>gi|440475553|gb|ELQ44222.1| exosome complex exonuclease RRP4 [Magnaporthe oryzae Y34]
gi|440490682|gb|ELQ70211.1| exosome complex exonuclease RRP4 [Magnaporthe oryzae P131]
Length = 340
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 112/199 (56%), Gaps = 27/199 (13%)
Query: 50 LKGHGTSDQKGELA--ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT A ++V G V R NKL+ VR +RARY PE GD+V+GR++EV +RWK
Sbjct: 39 MRGHGTYTFPASPAIMSSVAGTVSRTNKLLSVRPMRARYTPEVGDLVVGRIVEVQARRWK 98
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ Q A L LS++NLP GI R+RT DEL +RS F E DL+ AEV+ GDG L
Sbjct: 99 VDVGGVQLAALPLSAINLPGGILRKRTETDELQIRSFFAEGDLLVAEVQQLFGDGGASLH 158
Query: 168 ARNQKYGKLERG------------------QLLTVD-------PYLVKRRKQHFHHLEEY 202
R+ +YGKL G Q+ T++ ++++
Sbjct: 159 TRSLRYGKLRNGVFAAVSGTGGGGVVRARRQVWTMEIASTGTSATWQDKQQKAASSQAPP 218
Query: 203 GIDLIIGCNGYIWIGEHVE 221
ID+++G NGY+WI +HVE
Sbjct: 219 SIDVVLGVNGYVWISKHVE 237
>gi|365760360|gb|EHN02086.1| Rrp4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 233
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 109/183 (59%), Gaps = 7/183 (3%)
Query: 20 LERLESLSSKSNPNSCVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKL 76
L + S S S+ + VT G+ I P++ ++GHGT ++V G V R+N+L
Sbjct: 39 LPDVNSRSKDSSDSQIVTPGELITDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRL 94
Query: 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAV 136
+ V L+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++
Sbjct: 95 LSVIPLKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSES 154
Query: 137 DELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHF 196
DEL MRS E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H
Sbjct: 155 DELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHT 214
Query: 197 HHL 199
H+L
Sbjct: 215 HNL 217
>gi|157866419|ref|XP_001687601.1| putative exosome complex exonuclease [Leishmania major strain
Friedlin]
gi|68125215|emb|CAJ02553.1| putative exosome complex exonuclease [Leishmania major strain
Friedlin]
Length = 307
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 27/246 (10%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ A + G +E ++I V+ L RY+PE GD+V+GR++EV +W +++N TQ AI++
Sbjct: 52 GEVVAAISGHIEVTERVISVKGLLPRYQPEIGDVVVGRIVEVSGNKWHVDVNSTQTAIML 111
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ-KYGKLER 178
LSS+ P GI RRR DEL MR IF ++DLV AEV+ DG + L R KYG+L
Sbjct: 112 LSSVTEPGGILRRRGRGDELGMRQIFDQDDLVAAEVQRISPDGVMSLHTRAADKYGRLSG 171
Query: 179 -GQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL 237
G L++V P LVKR K F L +Y LIIG NG IW
Sbjct: 172 LGILVSVRPSLVKRAKHQFVELADYSTQLIIGMNGNIW---------------------- 209
Query: 238 IAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLN 297
I ++ D +E + +ARQN+ R+AN I+ L I I +V S
Sbjct: 210 ICSVQPSTSDAEETEHAT---DARQNVARVANCIKALGAAQVQIHPASIEASVAASLDAG 266
Query: 298 LDIHDM 303
L + D+
Sbjct: 267 LSVFDV 272
>gi|119608347|gb|EAW87941.1| exosome component 2, isoform CRA_a [Homo sapiens]
Length = 192
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 116/199 (58%), Gaps = 19/199 (9%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGK++
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKMKS-------------- 168
Query: 193 KQHFHHLEEYGIDLIIGCN 211
H++ + G++L+ N
Sbjct: 169 ----HYVAQAGLELLTSSN 183
>gi|346318422|gb|EGX88025.1| exosome component 2 [Cordyceps militaris CM01]
Length = 353
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 111/184 (60%), Gaps = 13/184 (7%)
Query: 50 LKGHGTSDQKGE--LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT +G + +++ G + + NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 74 MRGHGTYVPQGSTSITSSLAGTLTKTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWR 133
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ Q AIL +S++NLP GI R+RT DEL +R+ F E DLV AEV+ DG+ L
Sbjct: 134 VDVAAAQLAILQISAINLPGGILRKRTETDELQIRTFFAEGDLVVAEVQQLHQDGAASLH 193
Query: 168 ARNQKYGKLE----RGQLLTVDPYLVKRRKQHFHHLEE-------YGIDLIIGCNGYIWI 216
R+ KYGKL T V R K+ +E + +D+++G NGYIWI
Sbjct: 194 TRSLKYGKLRNGVFVRVGGTGGGGGVVRAKRQVWTMEPAATAAAAHKMDVLLGVNGYIWI 253
Query: 217 GEHV 220
HV
Sbjct: 254 SRHV 257
>gi|145504016|ref|XP_001437980.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405141|emb|CAK70583.1| unnamed protein product [Paramecium tetraurelia]
Length = 274
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 114/172 (66%), Gaps = 3/172 (1%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E G + G T +++G++ ++ G + + NKLI ++ ++ Y+P+ G+IVIG+++++ K+
Sbjct: 24 ETGFISGTNTYEEQGKIFSSTTGTINQTNKLIMIKPIKCSYQPQIGEIVIGQIVQIRDKK 83
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W + I + +A L L+S LP+ QR++T DE+NMR IF ENDL+CAEV S D S+
Sbjct: 84 WIVNIGSSSEATLHLNSTYLPE--QRQKTEDDEMNMRQIFAENDLICAEVHSVNNDKSVN 141
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIG 217
L R KYGK+E G L+ V+ YL+ ++K+HF L +++I+G NG I++
Sbjct: 142 LHTRGLKYGKIEDGLLIKVNHYLIVKQKRHFIKLNN-NVNMILGHNGQIFLS 192
>gi|403256509|ref|XP_003920916.1| PREDICTED: exosome complex component RRP4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 267
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 113/204 (55%), Gaps = 28/204 (13%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTAFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLIS--------------------------GVLVQVSPSLVKRQ 156
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 157 KTHFHDL-PCGASVILGNNGFIWI 179
>gi|396082328|gb|AFN83938.1| Rrp4-like RNA-binding protein [Encephalitozoon romaleae SJ-2008]
Length = 225
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 47 DGILKGHGTSDQKGELAATVCGVVERINKLIYV-RALRARYKPETGDIVIGRVIEVVPKR 105
DG ++GHGT + + +T G V NKL+ + +Y PE G++VIGRV+ + K+
Sbjct: 15 DGYIRGHGTQLKDSHIVSTYFGKVRITNKLVAIDPVFPMKYTPEVGNVVIGRVVGIHNKK 74
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK+++N D L LS++NLP +QRR+ DE++MRS F NDLV +E++ +G+
Sbjct: 75 WKIDLNSRSDVYLGLSAINLPGAVQRRKQESDEMSMRSFFDINDLVVSEIQKVNRNGTAA 134
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIG 217
L RN +YGKL +G L+ V +L++ K F L I +I GCNGYIWIG
Sbjct: 135 LHTRNDRYGKLSKGLLVFVPHFLLEPLKTRF--LFNDSIKVIAGCNGYIWIG 184
>gi|343471089|emb|CCD16409.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 316
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 150/268 (55%), Gaps = 37/268 (13%)
Query: 23 LESLSSKSNPNSCVTVGDTIPVY-EDGI-LKGHGTSD------------QKGELAATVCG 68
+ S++ + + C +VG+T Y ED + L+G+ T + GE+ A++ G
Sbjct: 17 MSSVTCVTGESICGSVGNTKLGYGEDHVFLRGYNTYEGNHPNTAAAAQEGAGEIVASING 76
Query: 69 VVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDG 128
+VE ++++ V+ + +RY E GDIV+GRV EV RW+++I QDA+++LS++ P G
Sbjct: 77 MVEVTDRVVSVKGMSSRYTAEIGDIVVGRVKEVAGNRWRIDIGAFQDAVMLLSNVTEPGG 136
Query: 129 IQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN-QKYGKLER-GQLLTVDP 186
I RRR DEL MR+IF E +LV AEV+ DG + L R+ +KYGKL G L++V P
Sbjct: 137 ILRRRGRDDELTMRNIFDEGELVVAEVQRISTDGVVSLHTRSGEKYGKLSSLGILVSVSP 196
Query: 187 YLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSM 246
LV+R K HF +E I+L++G NG IW+ + DK SE+ S
Sbjct: 197 ALVRRVKHHFICVESLRINLVVGTNGAIWV-----SSDK--------SEK--------SH 235
Query: 247 DLDEQDGTCTPREARQNICRIANAIRVL 274
D + + R+N+ R+ N IRV+
Sbjct: 236 DAGNSTFNGSGLDIRRNVARVVNCIRVM 263
>gi|396493578|ref|XP_003844087.1| hypothetical protein LEMA_P017380.1 [Leptosphaeria maculans JN3]
gi|312220667|emb|CBY00608.1| hypothetical protein LEMA_P017380.1 [Leptosphaeria maculans JN3]
Length = 341
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 124/205 (60%), Gaps = 14/205 (6%)
Query: 29 KSNPNSCVTVGDTIPVYEDGILKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARY 86
++ S VT G+ I + ++GHGT + +TV G + + NKL+ V+ LRARY
Sbjct: 35 STDTKSIVTPGEHI-TSDPQWMRGHGTYVPPDSSTIISTVAGHLHKTNKLLSVQPLRARY 93
Query: 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFT 146
+PE GD+VIGR++ V K+W ++I A L LSS+NLP GI RRRTAVDELN+R+ F+
Sbjct: 94 QPEIGDLVIGRIVSVQTKKWSVDIAAPMLANLPLSSINLPGGILRRRTAVDELNIRTFFS 153
Query: 147 ENDLVCAEVRSSQGDGSLQLQARNQKYGKLER----------GQLLTVDPYLVKRRKQHF 196
E DL+ AEV+S D + L R+ KYGKL G +L+ +V+ R+Q F
Sbjct: 154 EGDLLVAEVQSLHQDNTASLHTRSLKYGKLRNGLFTSLTGAGGGILSRRGGVVRSRRQVF 213
Query: 197 HHLEEYG-IDLIIGCNGYIWIGEHV 220
G ID+I+G NGYI+I +H+
Sbjct: 214 TLNTAAGEIDVILGVNGYIFISKHI 238
>gi|451997771|gb|EMD90236.1| hypothetical protein COCHEDRAFT_1022251 [Cochliobolus
heterostrophus C5]
Length = 344
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 17/207 (8%)
Query: 30 SNPNSCVTVGDTIPVYEDGILKGHGT---SDQKGE--LAATVCGVVERINKLIYVRALRA 84
S+ + VT G+ I + ++GHGT S G + +TV G + + NKL+ V+ LRA
Sbjct: 36 SSSKAIVTPGEHI-TSDPQWMRGHGTYIPSQPAGSTTIISTVAGTLHKTNKLLSVQPLRA 94
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY+PE GD+V+GR++ V K+W ++I A L LSS+NLP G+ RRRT VDELN+R+
Sbjct: 95 RYQPEIGDLVVGRIMTVGTKKWNVDIAAPMLANLPLSSINLPGGVLRRRTTVDELNIRTF 154
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----------LVKRRKQ 194
F E DL+ AEV+S DG+ L R+ KYGKL G ++ +V+ R+Q
Sbjct: 155 FQEGDLLVAEVQSLHQDGTASLHTRSLKYGKLRNGVFTSITGAGGGILSRKGGVVRSRRQ 214
Query: 195 HFHHLEEYG-IDLIIGCNGYIWIGEHV 220
F G I++I+G NGY+++ +H+
Sbjct: 215 VFTLNTAAGEINIILGVNGYVFVCKHM 241
>gi|302914604|ref|XP_003051170.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732108|gb|EEU45457.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 329
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 10/183 (5%)
Query: 50 LKGHGT--SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++GHGT +A+++ G + + NKL+ VR LRARY PE GD+V+GR++EV KRW+
Sbjct: 53 MRGHGTYIPSGSSSIASSLAGTLTKTNKLLSVRPLRARYTPEIGDLVVGRIVEVQAKRWR 112
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ 167
+++ +Q AIL +S++NLP GI R+RT DEL +RS F E DLV AEV+ DG+ L
Sbjct: 113 VDVAASQLAILQISAINLPGGILRKRTETDELQIRSFFAEGDLVVAEVQQLHQDGAASLH 172
Query: 168 ARNQKYGKLERGQLLTVDPYLV------KRRKQHFHHLEEYG--IDLIIGCNGYIWIGEH 219
R+ KYGKL G ++V +R+ + G +D+++G NGYIWI +H
Sbjct: 173 TRSLKYGKLRNGVFVSVTGTGGGGGVVRAKRQVWTMDVANAGGKVDVLLGVNGYIWISKH 232
Query: 220 VEA 222
+E+
Sbjct: 233 IES 235
>gi|341895169|gb|EGT51104.1| hypothetical protein CAEBREN_13458 [Caenorhabditis brenneri]
Length = 303
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 140/250 (56%), Gaps = 19/250 (7%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + GE+ +++ GVV+++N+L+ V+ ++ RY E GD+V+ RV+EV KRWK
Sbjct: 45 FMRGHGTYIRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVVVARVVEVQAKRWKC 104
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+++ A L L S+ LP G RR+ DE M +L+CAEV+ Q DG+L L
Sbjct: 105 DVSSRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHT 164
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN KYGKL +G + V P+L+K+ K+HFH L YG+ +IIGCNG +W+ + + +
Sbjct: 165 RNNKYGKLRQGITIKVPPHLIKKSKKHFHTL-PYGMAVIIGCNGNVWVTPSLP--ETTLE 221
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
+ GS+ + P++ R + R+A+ IR+L +I + I
Sbjct: 222 EDGSHIHEF----------------QVVPQDIRLTMVRVASCIRLLRDYSISIFINSITT 265
Query: 289 TVNLSNSLNL 298
+S ++
Sbjct: 266 AYEMSQPYDI 275
>gi|303391168|ref|XP_003073814.1| Rrp4-like RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302962|gb|ADM12454.1| Rrp4-like RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
Length = 223
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
Query: 47 DGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA-RYKPETGDIVIGRVIEVVPKR 105
DG ++GHGT + +A+T G V+ NKL+ + + + +Y PE G++V+GRVI + K+
Sbjct: 15 DGYIRGHGTQLRGSNIASTYFGRVKITNKLVSIDPISSMKYNPEVGNVVVGRVIGIHNKK 74
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK+E++ DA L LS++NLP +QRR+ DE++MR F NDLV +EV+ +G++
Sbjct: 75 WKVELSSRGDAYLGLSAINLPGTVQRRKQESDEMSMRDFFDINDLVVSEVQKVNRNGTIA 134
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGE 218
L RN YGKL +G L+ +L++ + F L I +I+GCNGYIW+G+
Sbjct: 135 LHTRNDMYGKLGQGLLVFAPHFLLEPLRTRF--LLHGNIKVIVGCNGYIWVGK 185
>gi|399216206|emb|CCF72894.1| unnamed protein product [Babesia microti strain RI]
Length = 260
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 113/181 (62%), Gaps = 1/181 (0%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD + +L G+G +G L A++ G +E+IN+LIYV+ L+ RY + GDIV+
Sbjct: 8 VIPGDCVASTSKTLLNGYGIYKHEGVLYASLMGKLEQINQLIYVKPLKGRYMAQVGDIVV 67
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GR+ E+V +W +EI + A L + +NL + RRR D +M +IF +DL+ EV
Sbjct: 68 GRIDEIVGNKWMVEIGSVERAQLSIFQVNLSELSGRRRLNEDLYDMSNIFALDDLISCEV 127
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+ +G+ LQ R+ K GKL+ G +LTV PYL+KR+ +H ++ ++G+ + +GCNG IW
Sbjct: 128 QRIMAEGTALLQIRSDKLGKLKNGIVLTVQPYLIKRQAKHI-YIFDFGVKITLGCNGKIW 186
Query: 216 I 216
+
Sbjct: 187 L 187
>gi|308477587|ref|XP_003101007.1| CRE-EXOS-2 protein [Caenorhabditis remanei]
gi|308264351|gb|EFP08304.1| CRE-EXOS-2 protein [Caenorhabditis remanei]
Length = 303
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 141/250 (56%), Gaps = 19/250 (7%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + GE+ +++ GVV+++N+L+ V+ ++ RY E GD+V+ RV+EV KRWK
Sbjct: 45 FMRGHGTYIRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVVVARVVEVQAKRWKC 104
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+++ A L L S+ LP G RR+ DE M +L+CAEV+ Q DG+L L
Sbjct: 105 DVSSRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHT 164
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN KYGKL++G L+ V P+L+K+ K+HFH L YG+ +IIGCNG +W+ + + V
Sbjct: 165 RNNKYGKLQQGILIKVPPHLIKKSKKHFHTL-PYGMAVIIGCNGNVWVTPALP--ETTVE 221
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
+ GS+ + P++ R + R+A +R+L +I + +
Sbjct: 222 EDGSHVHEF----------------QIVPQDIRLVMIRVAACVRLLRDYSISIFLNSLTT 265
Query: 289 TVNLSNSLNL 298
+S ++
Sbjct: 266 CYEMSQPYDI 275
>gi|308454282|ref|XP_003089783.1| hypothetical protein CRE_02717 [Caenorhabditis remanei]
gi|308268796|gb|EFP12749.1| hypothetical protein CRE_02717 [Caenorhabditis remanei]
Length = 273
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 141/250 (56%), Gaps = 19/250 (7%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + GE+ +++ GVV+++N+L+ V+ ++ RY E GD+V+ RV+EV KRWK
Sbjct: 15 FMRGHGTYIRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVVVARVVEVQAKRWKC 74
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+++ A L L S+ LP G RR+ DE M +L+CAEV+ Q DG+L L
Sbjct: 75 DVSSRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHT 134
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN KYGKL++G L+ V P+L+K+ K+HFH L YG+ +IIGCNG +W+ + + V
Sbjct: 135 RNNKYGKLQQGILIKVPPHLIKKSKKHFHTL-PYGMAVIIGCNGNVWVTPALP--ETTVE 191
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
+ GS+ + P++ R + R+A +R+L +I + +
Sbjct: 192 EDGSHVHEF----------------QIVPQDIRLVMIRVAACVRLLRDYSISIFLNSLTT 235
Query: 289 TVNLSNSLNL 298
+S ++
Sbjct: 236 CYEMSQPYDI 245
>gi|17544090|ref|NP_500978.1| Protein EXOS-2 [Caenorhabditis elegans]
gi|351059307|emb|CCD74150.1| Protein EXOS-2 [Caenorhabditis elegans]
Length = 303
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 138/250 (55%), Gaps = 19/250 (7%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + GE+ +++ GVV+++N+L+ V+ ++ RY E GD+V+ RV+EV KRWK
Sbjct: 45 FMRGHGTYVRDGEIVSSLSGVVQQLNRLLMVKTIKQRYAGEVGDVVVARVVEVQAKRWKC 104
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
++ A L L S+ LP G RR+ DE M +L+CAEV+ Q DG+L L
Sbjct: 105 DVASRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHT 164
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN KYGKL++G L+ V P+L+K+ K+HFH L YG+ +IIGCNG +W+ + + +
Sbjct: 165 RNNKYGKLQQGILIKVPPHLIKKSKKHFHTL-PYGMAVIIGCNGSVWVTPSLP--ETTLE 221
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
+ GS+ + P + R + RIA +R+L +I + +
Sbjct: 222 EDGSHVHEF----------------QIVPPDVRVTMVRIAACVRLLRDYSISIYLNSLTT 265
Query: 289 TVNLSNSLNL 298
+S +
Sbjct: 266 CYEMSQPYEI 275
>gi|429963289|gb|ELA42833.1| hypothetical protein VICG_00148 [Vittaforma corneae ATCC 50505]
Length = 224
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
Query: 47 DGILKGHGTSDQKGELAATVCGVVERINKLIYVR-ALRARYKPETGDIVIGRVIEVVPKR 105
+G +KGHGT ++ + G V +INKLI + RY PE GD+V+GRVI++ K+
Sbjct: 15 EGYIKGHGTEQIGDKIYSNYFGTVNQINKLITIAPVFSVRYTPEVGDVVVGRVIQIYSKK 74
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK++ N D L L ++NLP +QRR++ DE+NM F ND++ EV+ +GS
Sbjct: 75 WKVDTNCRSDTTLSLGAINLPGVMQRRKSEEDEINMSKYFDINDVIVCEVQKVNKNGSAA 134
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
L R+ KYG+L G L+ V P L+ K F + + G+++ GCNG+IWI
Sbjct: 135 LHTRSDKYGRLSNGVLINVSPDLLVATKSRF--IAKGGVEITSGCNGHIWI 183
>gi|225710828|gb|ACO11260.1| Exosome complex exonuclease RRP4 [Caligus rogercresseyi]
Length = 183
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 112/165 (67%), Gaps = 8/165 (4%)
Query: 27 SSKSNPN-SCVTVGDTIPVYEDGILKGHGT---SDQKGE---LAATVCGVVERINKLIYV 79
S +P+ + VT GD I E G ++GHGT D++G+ L A++ G+V+R+NKLI V
Sbjct: 13 SEAVDPDLTFVTPGDVI-TRESGFMRGHGTYAAKDEEGDEDILLASLGGIVKRVNKLIRV 71
Query: 80 RALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDEL 139
LR+ Y+ E GD+++GR+ EV +RWK+++N DA+L LSS+NLP G RRR++ DEL
Sbjct: 72 LPLRSIYQGEIGDVLVGRISEVQQRRWKVDVNSRLDAVLQLSSVNLPGGELRRRSSEDEL 131
Query: 140 NMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTV 184
MRS E DL+ AEV++ DGS+ + R+ KYGKLE+G LL V
Sbjct: 132 AMRSYLREGDLISAEVQTLYKDGSMSIHTRSLKYGKLEQGTLLKV 176
>gi|268536880|ref|XP_002633575.1| C. briggsae CBR-EXOS-2 protein [Caenorhabditis briggsae]
Length = 303
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 140/250 (56%), Gaps = 19/250 (7%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + GE+ +++ GVV+++N+L+ V+ ++ RY E GD+V+ RV+EV KRWK
Sbjct: 45 FMRGHGTFIRDGEIVSSLSGVVKQLNRLLMVKTIKQRYAGEVGDVVVARVVEVQAKRWKC 104
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+++ A L L S+ LP G RR+ DE M +L+CAE++ Q DG+L L
Sbjct: 105 DVSSRLHANLPLGSVLLPGGDFRRKDVEDEEKMSEFLKNGELICAEIQQVQHDGTLMLHT 164
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
RN KYGKL++G L+ V P+L+K+ K+HFH L YG+ +IIGCNG +W+ + + +
Sbjct: 165 RNNKYGKLQQGILIKVPPHLIKKSKKHFHTL-PYGMAVIIGCNGNVWVTPALP--ETTLE 221
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILE 288
+ GS+ + P + R + R+A IR+L +I + +
Sbjct: 222 EDGSHVNEF----------------QTVPHDIRLVMVRVAACIRILRDYSISIFLNSLTT 265
Query: 289 TVNLSNSLNL 298
+S ++
Sbjct: 266 CYEMSQPYDI 275
>gi|398412770|ref|XP_003857703.1| hypothetical protein MYCGRDRAFT_32207 [Zymoseptoria tritici IPO323]
gi|339477588|gb|EGP92679.1| hypothetical protein MYCGRDRAFT_32207 [Zymoseptoria tritici IPO323]
Length = 311
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 14/197 (7%)
Query: 32 PNSCVTVGDTIPVYEDG-ILKGHGT-----SDQKGELAATVCGVVERINKLIYVRALRAR 85
P+S + P+ D ++GHGT S Q + +T+ G + + NKL+ + LRAR
Sbjct: 13 PSSTTLLTPGQPITSDPQYMRGHGTYLPPLSQQT--ITSTLAGTLLKTNKLLSILPLRAR 70
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y PE GD+VIGR+ EV +RWK++IN A L+LSS+NLP G RRRT+VDELN+RS F
Sbjct: 71 YTPEIGDLVIGRIYEVQSRRWKVDINAPLLANLLLSSINLPGGALRRRTSVDELNVRSFF 130
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEE 201
E +L+ AEV+S GDGS L R+ KYGKL G ++V +V+ ++Q F
Sbjct: 131 QEGELLVAEVQSLFGDGSASLHTRSLKYGKLRNGNFVSVSGMGGTGVVRSKRQIFSIQTA 190
Query: 202 YG--IDLIIGCNGYIWI 216
G + +I+G NG++W+
Sbjct: 191 RGGEVGVILGVNGFVWV 207
>gi|116201531|ref|XP_001226577.1| hypothetical protein CHGG_08650 [Chaetomium globosum CBS 148.51]
gi|88177168|gb|EAQ84636.1| hypothetical protein CHGG_08650 [Chaetomium globosum CBS 148.51]
Length = 324
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 100/159 (62%), Gaps = 11/159 (6%)
Query: 31 NPNSC--VTVGDTIPVYEDGILKGHGT---SDQKGELAA-----TVCGVVERINKLIYVR 80
NP+S VT G+ I + ++GHGT S G AA +V G V R NKL+ VR
Sbjct: 69 NPSSSSIVTPGEQI-TDDPQWMRGHGTYIPSTSTGRAAAGAIVSSVAGTVARTNKLLSVR 127
Query: 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN 140
LRARY PE GD+V+GR++EV KRW++++ TQ A L LS++NLP GI R+RT DEL
Sbjct: 128 PLRARYTPEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSAINLPGGILRKRTETDELQ 187
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
+RS F E DL+ AEV+ GDG L R+ KYGKL G
Sbjct: 188 IRSFFAEGDLLVAEVQQLFGDGGAVLHTRSLKYGKLRNG 226
>gi|401827833|ref|XP_003888209.1| Rrp4-like RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999409|gb|AFM99228.1| Rrp4-like RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 225
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 104/172 (60%), Gaps = 3/172 (1%)
Query: 47 DGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA-RYKPETGDIVIGRVIEVVPKR 105
+G ++GHGT + + +T G V NKL+ + + +Y PE G++VIGRV+ + K+
Sbjct: 15 NGYIRGHGTQLKDDHIVSTYFGRVRITNKLVAIDPVSPMKYSPEVGNVVIGRVVGIHNKK 74
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK+E+N D L LS++NLP QRR+ DE++MR F NDLV +EV+ +G+
Sbjct: 75 WKMELNSKADVYLGLSAINLPGVAQRRKQESDEMSMRDFFDINDLVVSEVQKVNRNGTAA 134
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIG 217
L RN +YGKL G L+ V +L++ K F L I I+GCNGYIWIG
Sbjct: 135 LHTRNDRYGKLGEGLLVFVPHFLLEPLKTRF--LSNGSIRAIVGCNGYIWIG 184
>gi|154334089|ref|XP_001562190.1| putative exosome complex exonuclease [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060312|emb|CAM37470.1| putative exosome complex exonuclease [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 303
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 131/248 (52%), Gaps = 31/248 (12%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ A + G +E +++I V+ L RY+PE GD+V+GR++EV +W++++N +Q AI++
Sbjct: 52 GEIVAAINGYIEVTDRVISVKGLLPRYQPEIGDVVVGRILEVTGNKWQVDVNSSQAAIML 111
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGK-LE 177
LS++ P GI RRR DEL MR +F ++DLV AEV+ DG + L R +KYG+ L
Sbjct: 112 LSNVTEPGGILRRRGRGDELGMRQLFDQDDLVAAEVQRISPDGVMSLHTRAAEKYGRLLG 171
Query: 178 RGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL 237
G L++V P LVKR K F L +Y LI+G NG IWI
Sbjct: 172 PGILVSVRPSLVKRAKHQFVELTDYNTQLIVGMNGNIWI--------------------- 210
Query: 238 IAKCDKNS--MDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNS 295
C S + +E+D + QN+ R+AN I+ L I I TV S
Sbjct: 211 ---CSMQSYATETEEKDHAV---DTYQNVARVANCIKALGAAQVQIYPASIKATVAASLE 264
Query: 296 LNLDIHDM 303
L D+
Sbjct: 265 AGLSAFDV 272
>gi|449310640|gb|AGE92547.1| exosome complex exonuclease ribosomal RNA processing protein 4
[Leishmania braziliensis]
Length = 303
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 131/248 (52%), Gaps = 31/248 (12%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ A + G +E +++I V+ L RY+PE GD+V+GR++EV +W++++N +Q AI++
Sbjct: 52 GEIVAAIDGYIEVTDRVISVKGLLPRYQPEIGDVVVGRILEVTGNKWQVDVNSSQAAIML 111
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGK-LE 177
LS++ P GI RRR DEL MR +F ++DLV AEV+ DG + L R +KYG+ L
Sbjct: 112 LSNVTEPGGILRRRGRGDELGMRQLFDQDDLVAAEVQRISPDGVMSLHTRAAEKYGRLLG 171
Query: 178 RGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL 237
G L++V P LVKR K F L +Y LI+G NG IWI
Sbjct: 172 PGILVSVRPSLVKRAKHQFVELTDYNTQLIVGMNGNIWI--------------------- 210
Query: 238 IAKCDKNS--MDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNS 295
C S + +E+D + QN+ R+AN I+ L I I TV S
Sbjct: 211 ---CSMQSYATETEEKDHAV---DTYQNVARVANCIKALGAAQVQIYPASIKATVAASLE 264
Query: 296 LNLDIHDM 303
L D+
Sbjct: 265 AGLSAFDV 272
>gi|449310616|gb|AGE92535.1| exosome complex exonuclease ribosomal RNA processing protein 4,
partial [Leishmania braziliensis]
Length = 296
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 131/248 (52%), Gaps = 31/248 (12%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
GE+ A + G +E +++I V+ L RY+PE GD+V+GR++EV +W++++N +Q AI++
Sbjct: 45 GEIVAAINGYIEVTDRVISVKGLLPRYQPEIGDVVVGRILEVTGNKWQVDVNSSQAAIML 104
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR-NQKYGK-LE 177
LS++ P GI RRR DEL MR +F ++DLV AEV+ DG + L R +KYG+ L
Sbjct: 105 LSNVTEPGGILRRRGRGDELGMRQLFDQDDLVAAEVQRISPDGVMSLHTRAAEKYGRLLG 164
Query: 178 RGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL 237
G L++V P LVKR K F L +Y LI+G NG IWI
Sbjct: 165 PGILVSVRPSLVKRAKHQFVELTDYNTQLIVGMNGNIWI--------------------- 203
Query: 238 IAKCDKNS--MDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNS 295
C S + +E+D + QN+ R+AN I+ L I I TV S
Sbjct: 204 ---CSMQSYATETEEKDHAV---DTYQNVARVANCIKALGAAQVQIYPASIKATVAASLE 257
Query: 296 LNLDIHDM 303
L D+
Sbjct: 258 AGLSAFDV 265
>gi|339238057|ref|XP_003380583.1| exosome complex exonuclease RRP4 [Trichinella spiralis]
gi|316976511|gb|EFV59796.1| exosome complex exonuclease RRP4 [Trichinella spiralis]
Length = 551
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 132/263 (50%), Gaps = 26/263 (9%)
Query: 20 LERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTS-DQKGELAATVCGVVERINKLIY 78
+ RL SS P + V G I DG GHGT + GEL + G+ ++ NK I
Sbjct: 8 ISRLSLESSADEPPNLVIPGCVI---VDG-QNGHGTYFNDNGELLVSTVGIAKKTNKFIC 63
Query: 79 VRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE 138
+ +R+RY GD VIGRV+EV+ KRWK+++N +AIL+LSS+NLP G RR++ DE
Sbjct: 64 IETVRSRYCGSVGDYVIGRVVEVLQKRWKVDVNARLNAILLLSSVNLPGGELRRKSEEDE 123
Query: 139 LNMRSIFTENDL------VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
MR E DL V AEV S DGSL LQ R+ + KL +G L++V +L+K+R
Sbjct: 124 QWMRENLVEGDLISVGFVVVAEVMSVYADGSLSLQLRD-IHRKLNQGVLVSVPSFLIKKR 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQD 252
K H HH + + G NG IWI E S +I C + D D
Sbjct: 183 KVHLHHF-PCKVTVSFGINGNIWIAPTDEEEKDC---SSSGFMDIIQVCKSTPLTYDTHD 238
Query: 253 GTCTPREARQNICRIANAIRVLS 275
NI R N +L+
Sbjct: 239 ----------NIARFRNCCCLLA 251
>gi|119608348|gb|EAW87942.1| exosome component 2, isoform CRA_b [Homo sapiens]
Length = 263
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 111/204 (54%), Gaps = 32/204 (15%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ E RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITE------------------------------RR 92
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 93 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 152
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 153 KTHFHDL-PCGASVILGNNGFIWI 175
>gi|300706891|ref|XP_002995678.1| hypothetical protein NCER_101358 [Nosema ceranae BRL01]
gi|239604870|gb|EEQ82007.1| hypothetical protein NCER_101358 [Nosema ceranae BRL01]
Length = 218
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 3/172 (1%)
Query: 47 DGILKGHGTSDQKGELAATVCGVVERINKLI-YVRALRARYKPETGDIVIGRVIEVVPKR 105
D +KGHGT + LA+ G+ + INKL+ V + RY E GD+VIGRV + K+
Sbjct: 14 DEFIKGHGTQIKDDCLASVYFGLPKVINKLVTVVPKMYNRYNAEVGDVVIGRVTAIYNKK 73
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK+E+N + L LSS+NLP QRR+ DE+ MR F +DL+ AEV+ GS+
Sbjct: 74 WKIEMNCKSETSLNLSSINLPGVAQRRKLECDEIMMRDFFDIDDLIVAEVQKVNKSGSVS 133
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIG 217
L RN+KY KLE+G L+ + V K F ++ ++IIGCNGYIWI
Sbjct: 134 LHTRNEKYRKLEKGVLVKLTASNVPYVKTRFLRFSDF--EIIIGCNGYIWIA 183
>gi|209877206|ref|XP_002140045.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555651|gb|EEA05696.1| hypothetical protein CMU_027040 [Cryptosporidium muris RN66]
Length = 320
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 142/265 (53%), Gaps = 19/265 (7%)
Query: 36 VTVGDTIPVYEDGILKGHGT-SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIV 94
V GD I E ++GHGT D+ G L ++ CG+ E +NKL+Y +AL RY E GD+V
Sbjct: 55 VIPGDIIST-EPNYIRGHGTYEDEFGRLLSSTCGITENLNKLLYTKALGGRYVGEVGDVV 113
Query: 95 IGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAE 154
+GRV+EV KRW ++I +Q A L L+++NLP +QRRRT D L+M+ + E D++C E
Sbjct: 114 VGRVVEVGNKRWLVDIGSSQYAHLGLAAVNLPGSVQRRRTEEDSLDMKLLLDEGDVICTE 173
Query: 155 VRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYI 214
V+ Q +G L R+ KYGKL G L+ + LV+R+ QH L G+ LI+G NG+I
Sbjct: 174 VQRVQAEGLCHLHTRSAKYGKLANGLLVKIPGKLVQRQSQHIIVL-TCGVQLILGLNGFI 232
Query: 215 WIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVL 274
WI E S+++ L + + E D R I +A I+
Sbjct: 233 WISLPFEQ---------SHTDTLNYSSSSITSQIVEPD-------MRSIIVSLATIIKTF 276
Query: 275 SRLGFNITVEVILETVNLSNSLNLD 299
LG +T I N S NLD
Sbjct: 277 GTLGIQLTPSRIDAVYNSIKSRNLD 301
>gi|514266|gb|AAB60392.1| unknown [Homo sapiens]
Length = 261
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 111/204 (54%), Gaps = 32/204 (15%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 2 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 60
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ E RR
Sbjct: 61 VNKLICVKALKTRYIGEVGDIVVGRITE------------------------------RR 90
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 91 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 150
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 151 KTHFHDL-PCGASVILGNNGFIWI 173
>gi|14250901|emb|CAC39255.1| Rrp4p homologue [Trypanosoma brucei]
Length = 301
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 133/245 (54%), Gaps = 23/245 (9%)
Query: 62 LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLS 121
+ A++ G+VE ++++ V+ + +RY E GDIV+GRV EV RW++++ QDA++ L+
Sbjct: 54 IIASINGMVEVTDRVVSVKGMSSRYVAEVGDIVVGRVKEVCGNRWRVDVGAFQDAVMPLA 113
Query: 122 SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN-QKYGKL-ERG 179
++ P GI RRR DEL MR+IF E +LV AEV+ DG + L R+ +KYGKL + G
Sbjct: 114 NVTEPGGILRRRGRSDELTMRNIFDEGELVVAEVQRVSQDGLISLHTRSGEKYGKLSDFG 173
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
L+ + P LVKR K HF LE ++L++G NG IW+ + +E +
Sbjct: 174 LLVLISPALVKRVKHHFMCLEFIHVNLVLGTNGAIWVSPATAT---------TATESAKS 224
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
D+ D+ R+ + R+AN IRV+ F + + I V S L
Sbjct: 225 AYDRFDADI------------RRAVTRVANCIRVMGNARFPVFDKSIEAAVKASIDFVLG 272
Query: 300 IHDML 304
++L
Sbjct: 273 PFEIL 277
>gi|19074743|ref|NP_586249.1| similarity to HYPOTHETICAL PROTEIN YAZE_SCHPO [Encephalitozoon
cuniculi GB-M1]
gi|19069385|emb|CAD25853.1| similarity to HYPOTHETICAL PROTEIN YAZE_SCHPO [Encephalitozoon
cuniculi GB-M1]
gi|449329904|gb|AGE96172.1| hypothetical protein ECU10_1340 [Encephalitozoon cuniculi]
Length = 223
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 106/172 (61%), Gaps = 3/172 (1%)
Query: 47 DGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA-RYKPETGDIVIGRVIEVVPKR 105
+G ++GHGT + +A+T G NKL+ V + +Y PE GD+V+GRVI + K+
Sbjct: 15 EGYIRGHGTQLRGSCIASTYFGRPRITNKLVTVDPMFPLKYSPEVGDVVVGRVIGIHNKK 74
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
WK+E+N D L LS++NLP +QRR+ DE++MR F +DLV +EV+ +G
Sbjct: 75 WKMELNSKADVYLGLSAINLPGTVQRRKQESDEISMRDFFEIDDLVVSEVQKVGRNGVAA 134
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIG 217
L R+ KYGKL G L+ V +L++ K F L +++I+GCNGYIW+G
Sbjct: 135 LHTRSDKYGKLGPGLLVFVPHFLLEPLKTRF--LSNGSVEVIVGCNGYIWVG 184
>gi|119608349|gb|EAW87943.1| exosome component 2, isoform CRA_c [Homo sapiens]
Length = 127
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 89/126 (70%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT + +L A+V G VER+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E
Sbjct: 1 MRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVE 60
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
N D++L+LSSMNLP G RRR+A DEL MR E DL+ AEV++ DG++ L R
Sbjct: 61 TNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTR 120
Query: 170 NQKYGK 175
+ KYGK
Sbjct: 121 SLKYGK 126
>gi|402081909|gb|EJT77054.1| exosome component 2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 336
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 112/201 (55%), Gaps = 15/201 (7%)
Query: 35 CVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIV 94
VT G+ I + ++GHGT + ++V G V R N+L+ VR +RARY PE GD+V
Sbjct: 35 IVTPGEVI-TTDPQWMRGHGTYTVPPAIVSSVAGTVSRTNRLLSVRPVRARYTPEVGDLV 93
Query: 95 IGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAE 154
+GR++EV +RW++++ +Q A L LS++NLP G+ R+RT DEL +RS F E DL+ AE
Sbjct: 94 VGRIVEVQARRWRVDVGASQLAALPLSAINLPGGVLRKRTDTDELQIRSFFAEGDLLVAE 153
Query: 155 VRSSQGDGSLQLQARN-QKYGKLERGQL---LTVDPYLVKRR----------KQHFHHLE 200
V+ GDG L R+ ++ +E + P R+
Sbjct: 154 VQQLFGDGGAGLHTRSLRQVWTMEVASTAPSASTHPAAAGRKGGGQQARNPAATAAAAAA 213
Query: 201 EYGIDLIIGCNGYIWIGEHVE 221
ID+++G NGY+WI +HVE
Sbjct: 214 NRSIDVVLGVNGYVWISKHVE 234
>gi|72391592|ref|XP_846090.1| ribosomal RNA processing protein 4 [Trypanosoma brucei TREU927]
gi|62175654|gb|AAX69786.1| ribosomal RNA processing protein 4 [Trypanosoma brucei]
gi|70802626|gb|AAZ12531.1| ribosomal RNA processing protein 4 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 324
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 133/245 (54%), Gaps = 23/245 (9%)
Query: 62 LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLS 121
+ A++ G+VE ++++ V+ + +RY E GDIV+GRV EV RW++++ QDA++ L+
Sbjct: 77 IIASINGMVEVTDRVVSVKGMSSRYVAEVGDIVVGRVKEVCGNRWRVDVGAFQDAVMPLA 136
Query: 122 SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN-QKYGKL-ERG 179
++ P GI RRR DEL MR+IF E +LV AEV+ DG + L R+ +KYGKL + G
Sbjct: 137 NVTEPGGILRRRGRSDELTMRNIFDEGELVVAEVQRVSQDGLISLHTRSGEKYGKLSDFG 196
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
L+ + P LVKR K HF LE ++L++G NG IW+ + +E +
Sbjct: 197 LLVLISPALVKRVKHHFMCLEFIHVNLVLGTNGAIWVSPATAT---------TATESAKS 247
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
D+ D+ R+ + R+AN IRV+ F + + I V S L
Sbjct: 248 AYDRFDADI------------RRAVTRVANCIRVMGNARFPVFDKSIEAAVKASIDFVLG 295
Query: 300 IHDML 304
++L
Sbjct: 296 PFEIL 300
>gi|358254204|dbj|GAA54226.1| exosome complex component RRP4 [Clonorchis sinensis]
Length = 389
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 122/249 (48%), Gaps = 33/249 (13%)
Query: 53 HGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINF 112
H S + G + ++ G V +NKL+YV +ARY GD V+GR+IEV +RWK++IN
Sbjct: 81 HEDSIKTGAMRTSLTGRVRIVNKLVYVEPPKARYSGNVGDTVVGRIIEVEQRRWKVDINS 140
Query: 113 TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQK 172
+ L L+++ LP G RR++ DE MRS E DL+ AEV DG+LQL +
Sbjct: 141 SLLGNLALANVKLPGGELRRKSEDDERAMRSFMKEGDLIVAEVHEIYKDGTLQLHMPGTR 200
Query: 173 YGKLERGQLLTVDPYLVKRRKQHFHHL--------------------EEYGIDLIIGCNG 212
GKL G LL V P LVKR+K H H L E + LI+GCNG
Sbjct: 201 TGKLGGGCLLRVPPSLVKRQKIHRHRLAVPRTSSVHGPLTSASTNPTEVISVGLILGCNG 260
Query: 213 YIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIR 272
Y+WIG AR +D G I + S LD R + R+ N +
Sbjct: 261 YVWIG---PAR---AMDIGLGLAAPIESAAEGSTQLDYL-------AERFAVSRVRNCVI 307
Query: 273 VLSRLGFNI 281
L+R G +
Sbjct: 308 ALTRNGMPV 316
>gi|261329635|emb|CBH12617.1| exosome complex exonuclease [Trypanosoma brucei gambiense DAL972]
Length = 324
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 23/245 (9%)
Query: 62 LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLS 121
+ A++ G+VE ++++ V+ + +RY E GDIV+GRV EV RW++ + QDA++ L+
Sbjct: 77 IIASINGMVEVTDRVVSVKGMSSRYVAEVGDIVVGRVKEVCGNRWRVNVGAFQDAVMPLA 136
Query: 122 SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN-QKYGKL-ERG 179
++ P GI RRR DEL MR+IF E +LV AEV+ DG + L R+ +KYGK+ + G
Sbjct: 137 NVTEPGGILRRRGRSDELTMRNIFDEGELVVAEVQRVSQDGLISLHTRSGEKYGKVSDFG 196
Query: 180 QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
L+ + P LVKR K HF LE ++L++G NG IW+ + +E +
Sbjct: 197 LLVLISPALVKRVKHHFMCLEFIHVNLVLGTNGAIWVSPATAT---------TATESAKS 247
Query: 240 KCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLD 299
D+ D+ R+ + R+AN IRV+ F + + I V S L
Sbjct: 248 AYDRFDADI------------RRAVTRVANCIRVMGNARFPVFDKSIEAAVKASVDFALG 295
Query: 300 IHDML 304
++L
Sbjct: 296 PFEIL 300
>gi|223998216|ref|XP_002288781.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975889|gb|EED94217.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 403
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 145/289 (50%), Gaps = 39/289 (13%)
Query: 62 LAATVCGVVERINKLIYVRALRAR-YKPETGDIVIGRVIEVVPKRWKLEINFT------- 113
L A+V G VER+NKLI V + Y + GD+++GR++ V RWK+ + +
Sbjct: 116 LIASVAGTVERVNKLISVIPISPSIYVGQVGDLIVGRIVGVGGSRWKVSLTCSPLTSSAS 175
Query: 114 ----QDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
++ L LS +NLP G+QR RT+ D L MRS+F E DL+ EV++ Q DG+L L R
Sbjct: 176 NGSMKEGQLPLSGVNLPGGVQRIRTSEDVLAMRSLFKEGDLLTCEVQNVQKDGTLILHTR 235
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHL--------------------EEYG-IDLII 208
+ +YGKL+ G L+TV P LV RRK HF L EE G +D+ +
Sbjct: 236 SLRYGKLDNGVLVTVPPSLVGRRKNHFVTLKGMVAGKNTDDNGMDVDGEEEETGDVDVYL 295
Query: 209 GCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTC--TPREARQNICR 266
G NG IWI V + + + + +A+ + L ++ T +P R+ I R
Sbjct: 296 GLNGGIWIQRTVPPKWENAIRADQDERAPLAETLQK---LRQRHATTRVSP-SMREGIAR 351
Query: 267 IANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAES 315
+ N+I L + IT + I S + + +ML E+ V + E
Sbjct: 352 VRNSIECLRLVHCQITPDTIEIVARASVDARVRVAEMLLPEWVVKLTEG 400
>gi|119195321|ref|XP_001248264.1| hypothetical protein CIMG_02035 [Coccidioides immitis RS]
Length = 293
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 105/189 (55%), Gaps = 15/189 (7%)
Query: 9 NQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGE------- 61
N + ++ A R S + + N+ VT G+ + + ++GHGT
Sbjct: 26 NADSDIEMDDATSR-PSKRPRLSKNTIVTPGEVV-TDDPQWMRGHGTFTPAPPGFSSTAQ 83
Query: 62 ------LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQD 115
+ ATV G V + NKL+ V LRARY PE GD+V+GR++EV +RWK+++
Sbjct: 84 SSLSSTIIATVAGTVLKTNKLLSVYPLRARYNPEIGDLVVGRIVEVQSRRWKVDVAAPLL 143
Query: 116 AILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGK 175
A L LS++NLP GI R+RT DEL +RS F E DLV AEV+S DGS L R+ KYGK
Sbjct: 144 ANLPLSAINLPGGILRKRTTADELQIRSFFNEGDLVVAEVQSVHQDGSASLHTRSLKYGK 203
Query: 176 LERGQLLTV 184
L G L V
Sbjct: 204 LRNGIFLAV 212
>gi|405946437|gb|EKC17636.1| Exosome complex exonuclease RRP4 [Crassostrea gigas]
Length = 194
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 1/139 (0%)
Query: 78 YVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVD 137
Y++ +K E GD+VIGR+IEV +RWK+E + D+ L+LSS+NLP G RRR+ D
Sbjct: 28 YLKREEINHKHEIGDVVIGRIIEVQQRRWKVETHAKLDSSLLLSSVNLPGGELRRRSEED 87
Query: 138 ELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFH 197
E MR E DL+ AEV+S DGSL L R+ KYGKL +G L+ V P L+KRRK HFH
Sbjct: 88 EKMMREYLKEGDLISAEVQSVFADGSLSLHTRSLKYGKLGQGTLVQVSPSLIKRRKTHFH 147
Query: 198 HLEEYGIDLIIGCNGYIWI 216
HL G +I+G NGY+WI
Sbjct: 148 HL-PCGATIILGNNGYVWI 165
>gi|320586714|gb|EFW99384.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
Length = 576
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 98/147 (66%), Gaps = 5/147 (3%)
Query: 33 NSCVTVGDTIPVYEDG-ILKGHGT-SDQKGE-LAATVCGVVERINKLIYVRALRARYKPE 89
+ VT G+ V ED ++GHGT +D+ G + +++ G V R N+L+ VR LRARY PE
Sbjct: 214 DEIVTPGEV--VTEDAKWMRGHGTYADESGAGIVSSLAGTVMRTNRLLSVRPLRARYAPE 271
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
GD+V+GR++EV +RW++++ Q A L LS++NLP G+ R+RT DEL +RS F E D
Sbjct: 272 VGDLVVGRIVEVQARRWRVDVGAAQLAALPLSAINLPGGVLRKRTETDELQIRSFFAEGD 331
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKL 176
L+ AEV+ DG+ L R+ +YGKL
Sbjct: 332 LLLAEVQQIFADGAAVLHTRSLRYGKL 358
>gi|71030016|ref|XP_764650.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351606|gb|EAN32367.1| hypothetical protein, conserved [Theileria parva]
Length = 263
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 1/181 (0%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD + +L+GHGT +L A+ G V+ +N+L+YV +Y + GDIVI
Sbjct: 7 VVPGDVVSSDSSFLLQGHGTYVSDKQLRASYLGSVKHVNQLVYVEPFGGKYVGQIGDIVI 66
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
G V + +W L++N + A L + +N + RR+ D M ++F ND+V E+
Sbjct: 67 GVVDSIQGNKWFLDVNAVELAQLSILQVNTEELANRRKIDEDIYEMSNLFNVNDIVSCEI 126
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+ G++ LQ R KYGKLE G L+ + P LV R+ +H + + E G+ +I+GCNGYIW
Sbjct: 127 QRISPTGTIMLQTRTSKYGKLENGILVKIKPNLVIRKGKHIYDM-ECGVRIILGCNGYIW 185
Query: 216 I 216
+
Sbjct: 186 L 186
>gi|403221661|dbj|BAM39793.1| conserved hypothetical protein [Theileria orientalis strain
Shintoku]
Length = 268
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 1/205 (0%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
++ V GD + +L+GHGT + EL A+ G+V+ +N+L+YV RY + GD
Sbjct: 4 SNLVLPGDVVSSDASYLLQGHGTHVSRNELKASYSGLVKHVNQLVYVEPFSGRYMGQIGD 63
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
IVIG V + +W L++N + A L + +N + RR+ D M ++F D++
Sbjct: 64 IVIGIVESIQGNKWFLDVNSVERAHLSILQVNTEELANRRKIDEDVYEMSNLFRVKDIIS 123
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
+E++ G++ LQ R KYG+L+ G L+ V P LV R+ +H + + E G+ +I+GCNG
Sbjct: 124 SEIQRISPSGTIILQTRTSKYGRLDNGILVVVRPNLVMRQVKHIYDM-ECGVRVIMGCNG 182
Query: 213 YIWIGEHVEARDKMVVDQGSNSEQL 237
YIW+ + + ++ G+ S +
Sbjct: 183 YIWLTTWMTSDKGNILSIGTFSSNV 207
>gi|397628046|gb|EJK68717.1| hypothetical protein THAOC_10080 [Thalassiosira oceanica]
Length = 388
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 142/286 (49%), Gaps = 29/286 (10%)
Query: 55 TSDQKGELAATVCGVVERINKLIYVRALRAR-YKPETGDIVIGRVIEVVPKRWKLEI--- 110
TS L A+V G VER+NKLI V L + Y + GD+V+GR++ V RWK+ +
Sbjct: 102 TSKGPQRLIASVAGTVERVNKLISVIPLSSSVYTGQVGDLVVGRIVGVGGSRWKVSLACS 161
Query: 111 --------NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDG 162
++ L LS +NLP G+QR RT+ D L MR++F E DL+ E++ Q DG
Sbjct: 162 PPSSSGSNGAMKEGQLPLSGVNLPGGVQRIRTSEDVLAMRTLFKEGDLLTCEIQQVQNDG 221
Query: 163 SLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE-------------EYGIDLIIG 209
+L L R+ +YGKLE G LLTV P LV RRK HF L+ E +D+ +G
Sbjct: 222 TLILHTRSLRYGKLENGVLLTVPPSLVGRRKNHFVTLKGLKTSADAVDEDGEGDVDVYLG 281
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTC-TPREARQNICRIA 268
NG IWI V + + + + +A+ + L + T R R+ I R+
Sbjct: 282 LNGGIWIQRTVPSEWEEAIRSDQDERAPLAETLQK---LRHRHATTRVSRSMRERIARVR 338
Query: 269 NAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAE 314
NA+ L + I+ + I S + + DML E V + E
Sbjct: 339 NAVECLRLVHCQISPDSIEAVARASLDAGVRVADMLLPENVVKLTE 384
>gi|154413907|ref|XP_001579982.1| exonuclease [Trichomonas vaginalis G3]
gi|121914195|gb|EAY18996.1| exonuclease, putative [Trichomonas vaginalis G3]
Length = 253
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 104/186 (55%), Gaps = 4/186 (2%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
N V G I +G++ G+G G++ ATV G ++ IN+L+ V + + Y P GD
Sbjct: 5 NQFVLPGQVIFENSEGLMPGNGVVLSNGKIIATVRGFIKIINQLVSVTPMTSIYSPNVGD 64
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
IV+GR+ + +RW+++I A L LSS+ LPDG RRRT DE NMR F DL+C
Sbjct: 65 IVVGRIESIQKQRWRVQIGAAVLADLRLSSIFLPDGELRRRTTTDERNMRQYFDVGDLIC 124
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGI--DLIIGC 210
AEV++ G S L R Q KLE G ++ V L+KR H L G+ +++ G
Sbjct: 125 AEVQNISGGTS--LHTREQHPKKLENGIVVDVPSRLIKRVPNHIVVLAFSGLRFNVVFGL 182
Query: 211 NGYIWI 216
NG IWI
Sbjct: 183 NGSIWI 188
>gi|429327206|gb|AFZ78966.1| hypothetical protein BEWA_018090 [Babesia equi]
Length = 271
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 122/244 (50%), Gaps = 33/244 (13%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
L+GHG + L A+ G + R+N+LIYV L RY + GDI++G V E+ +W LE
Sbjct: 29 LQGHGIYTENNVLKASYLGKIRRVNQLIYVEPLNGRYMAQVGDIIVGTVDEISGNKWLLE 88
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
+ + A L + +N D RR+ D M + F ND++ EV+ G++ LQ R
Sbjct: 89 VGSPERAQLSIFQVNSEDLANRRKVDEDVYEMSNSFAVNDVLACEVQRISPTGTIMLQTR 148
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVD 229
++G+L G L+ V P L+ R +H + L + GI +I+GCNGYIW
Sbjct: 149 TSRHGRLGNGTLVIVRPNLITRESKHIYDL-DCGIRIILGCNGYIW-------------- 193
Query: 230 QGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILET 289
+ C+ S+D TP R+NI + + I LS I++ ++++
Sbjct: 194 --------LTSCNDGSID--------TP--CRENIRTLRSIILGLSSRHIKISIGILIQL 235
Query: 290 VNLS 293
++LS
Sbjct: 236 LSLS 239
>gi|194381788|dbj|BAG64263.1| unnamed protein product [Homo sapiens]
Length = 150
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 88/141 (62%), Gaps = 1/141 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCA 153
R+A DEL MR E DL+
Sbjct: 123 RSAEDELAMRGFLQEGDLIST 143
>gi|84995806|ref|XP_952625.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302786|emb|CAI74893.1| hypothetical protein, conserved [Theileria annulata]
Length = 293
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD + +L+GHGT +L A+ G V+ +N+L+YV +Y + GDIVI
Sbjct: 8 VVPGDVVSSDSSFLLQGHGTYVSDKQLRASYLGSVKHVNQLVYVEPFGGKYVGQIGDIVI 67
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
G V + +W L++N + A L + +N + RR+ D M ++F ND+V E+
Sbjct: 68 GVVDSIQGNKWLLDVNSVELAQLSILQVNTEELANRRKIDEDIYEMSNLFNVNDIVSCEI 127
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIW 215
+ G++ LQ R KYGKLE G L+ + P LV R+ +H + D++ G +GYIW
Sbjct: 128 QRISSTGTIMLQTRTSKYGKLENGILVKIRPNLVIRKGKHIY-------DMVCGFSGYIW 180
Query: 216 I 216
+
Sbjct: 181 L 181
>gi|440492276|gb|ELQ74858.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp4
[Trachipleistophora hominis]
Length = 217
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 39 GDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA-RYKPETGDIVIGR 97
G+ + ED I H T + ++V G + RINKL+ V RY P GDI++GR
Sbjct: 5 GEKVCDIEDNIY-SHNTYPHNTSIHSSVLGTLTRINKLVMVEPCTTYRYIPLAGDIIVGR 63
Query: 98 VIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRS 157
V + KRWK+E N + IL L+++ LPD +QRR+ DE+ M S F D++ AE++
Sbjct: 64 VSMLSVKRWKIEANAQLECILSLTTIALPDNVQRRKLEQDEMLMHSFFDVGDVLVAEIQK 123
Query: 158 SQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIG 217
GS L RN+KYGKL G L V +V K F +E + +IG NGYI+I
Sbjct: 124 VNL-GSAVLSTRNEKYGKLTNGVLRVVPLRIVGSYKSSF--VENEHLKFVIGANGYIFIQ 180
Query: 218 -EHVEARD--KMVVDQGSNSEQLIAKCDKNSMDLDEQ 251
H EA + KMV + KC + +D++
Sbjct: 181 LRHNEAVNYAKMVA-----ALHYFDKCTAHGYLIDDK 212
>gi|392348779|ref|XP_003750193.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP4-like
[Rattus norvegicus]
Length = 291
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 115/214 (53%), Gaps = 6/214 (2%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
K+RL KA + L S + V DTI + G ++G GT Q+ L VCG++
Sbjct: 4 KIRLPKACKPLGESVSHDSKKHLVVPRDTISTDQTGFMRGRGTYMQEENL--IVCGLLR- 60
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+L R R GDIV+ R+I++ KR K+E N D++L+ SSMNLP G RR
Sbjct: 61 -TELTNXSVPRKRICGVVGDIVVARIIDIQQKRRKMETNSRLDSVLLPSSMNLPRGELRR 119
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG-QLLTVDPYLVKR 191
R+ + +R FTE L+ EV++ DG++ L R+ K+GK+ +G ++ L+KR
Sbjct: 120 RSVENVWAVRGFFTEGKLISMEVQAVFSDGAVSLHTRSLKHGKVGQGVXSMSRLSALMKR 179
Query: 192 RKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K H H+L G L +G N +IWI E +D+
Sbjct: 180 HKTHCHNL-PCGASLFLGNNSFIWIYPTPEHKDE 212
>gi|384497408|gb|EIE87899.1| hypothetical protein RO3G_12610 [Rhizopus delemar RA 99-880]
Length = 161
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%), Gaps = 7/119 (5%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
NP VTV + ++GHGT + ++V GVVE++NKL+ VR L+ RY E
Sbjct: 32 NPGETVTV-------DQQFMRGHGTYTDGEGVISSVAGVVEKVNKLLSVRPLKTRYTAEI 84
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
GDIV+GR+ EV +RWK+++N QDA L+LSS++LP G+QRR+ DEL MR F E D
Sbjct: 85 GDIVVGRITEVAMRRWKVDVNSRQDANLLLSSVSLPGGVQRRKNEADELQMRQFFAEGD 143
>gi|221052678|ref|XP_002261062.1| exosome complex exonuclease rrp4 [Plasmodium knowlesi strain H]
gi|194247066|emb|CAQ38250.1| exosome complex exonuclease rrp4, putative [Plasmodium knowlesi
strain H]
Length = 328
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
LKG G ++ + A + G V INKL+YV LR +Y GD+++G++ ++ +W +
Sbjct: 66 FLKGSGLYEEDEKYFACIVGTVNYINKLVYVEPLRGKYTGAVGDLLVGKIKDISNDKWVV 125
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
EI A+L +S N+ QR R D +NM +I+ ND++ EV+ DG + L
Sbjct: 126 EIGSYCKALLSISQTNISLFCQRIRLYNDVINMINIYKPNDIIACEVQRILPDGCIILHT 185
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE 221
R+ YGKL G L+TV L++ +K+H + + +I+G NG+IWI ++
Sbjct: 186 RSSIYGKLSNGILITVPQTLIQNQKKHI-FVFPCNVQIILGMNGFIWISSPIK 237
>gi|156094565|ref|XP_001613319.1| exosome complex exonuclease rrp4 [Plasmodium vivax Sal-1]
gi|148802193|gb|EDL43592.1| exosome complex exonuclease rrp4, putative [Plasmodium vivax]
Length = 345
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
LKG G ++ + A + G V INKL+YV LR +Y GD+++G++ ++ +W +
Sbjct: 66 FLKGSGLYEEDEKYFACIVGTVNYINKLVYVEPLRGKYTGAVGDLLVGKIKDISNDKWVV 125
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
EI A+L +S N+ QR R D +NM +I+ ND++ EV+ DG + L
Sbjct: 126 EIGSYCKALLSISQTNISVFCQRIRLYNDVINMINIYKPNDIIACEVQRILADGCIVLHT 185
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE 221
R+ YGKL G L+TV L++ +K+H + + +I+G NG+IW+ ++
Sbjct: 186 RSSIYGKLSNGILITVPQTLIQNQKKHI-FVFPCNVQVILGMNGFIWVSSPIK 237
>gi|389582211|dbj|GAB64766.1| exosome complex exonuclease rrp4 [Plasmodium cynomolgi strain B]
Length = 328
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
LKG G ++ + A + G V INKL+YV L+ +Y GD+++G++ ++ +W +
Sbjct: 66 FLKGSGLYEEDEKYFACIAGTVNYINKLVYVEPLKGKYTGAVGDLLVGKIKDITNDKWVV 125
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
EI A+L +S N+ QR R D +NM +I+ ND++ EV+ DG + L
Sbjct: 126 EIGSYCKALLSISQTNISLFCQRIRLYNDVINMINIYKPNDIIACEVQRILADGCIILHT 185
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE 221
R+ YGKL G L+TV L++ +K+H + + +I+G NG+IW+ ++
Sbjct: 186 RSTIYGKLSNGILITVPQTLIQNQKKHI-FVFPCNVQVILGMNGFIWVSSPIK 237
>gi|70934048|ref|XP_738308.1| exosome complex exonuclease rrp4 [Plasmodium chabaudi chabaudi]
gi|56514419|emb|CAH79701.1| exosome complex exonuclease rrp4, putative [Plasmodium chabaudi
chabaudi]
Length = 326
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
LKG G +++ A + G V INKL+YV LR +Y GD+++G++ ++ +W +
Sbjct: 66 FLKGSGLYEEEENFCACILGSVNYINKLVYVEPLRGKYTGSVGDLLVGKIKDINNDKWVV 125
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
EI A+L ++ N+ QR R D +NM +I+ ND++ EV+ DG + L
Sbjct: 126 EIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDVIACEVQRILTDGCIVLHT 185
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE 221
R+ YGKL G L+TV LV+ +K+H + + +I+G NG+IWI ++
Sbjct: 186 RSSIYGKLSNGILITVPQTLVQNQKKHI-FVFPCNVQIILGMNGFIWISSPIK 237
>gi|68073645|ref|XP_678737.1| exosome complex exonuclease rrp4 [Plasmodium berghei strain ANKA]
gi|56499299|emb|CAI04654.1| exosome complex exonuclease rrp4, putative [Plasmodium berghei]
Length = 326
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
LKG G +++ A + G V INKL+YV LR +Y GD+++G++ ++ +W +
Sbjct: 66 FLKGSGLYEEEENFCACLLGSVNYINKLVYVEPLRGKYTGSVGDLLVGKIKDINNDKWVV 125
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
EI A+L ++ N+ QR R D +NM +I+ ND++ EV+ DG + L
Sbjct: 126 EIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDVIACEVQRILTDGCIILHT 185
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE 221
R+ YGKL G L+TV LV+ +K+H + + +I+G NG+IWI ++
Sbjct: 186 RSSIYGKLSNGILITVPQTLVQNQKKHI-FVFPCNVQIILGMNGFIWISSPIK 237
>gi|83286482|ref|XP_730181.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489830|gb|EAA21746.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 326
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
LKG G +++ A + G V INKL+YV LR +Y GD+++G++ ++ +W +
Sbjct: 66 FLKGSGLYEEEENFCACLLGSVNYINKLVYVEPLRGKYTGSVGDLLVGKIKDINNDKWVV 125
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
EI A+L ++ N+ QR R D +NM +I+ ND++ EV+ DG + L
Sbjct: 126 EIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDVIACEVQRILTDGCIILHT 185
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE 221
R+ YGKL G L+TV LV+ +K+H + + +I+G NG+IWI ++
Sbjct: 186 RSSIYGKLSNGILITVPQTLVQNQKKHI-FVFPCNVQIILGMNGFIWISSPIK 237
>gi|429965501|gb|ELA47498.1| hypothetical protein VCUG_01030 [Vavraia culicis 'floridensis']
Length = 237
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 6/186 (3%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL-RARYKPET 90
PN + G+ + ED I H T + ++V G + RINKL+ + R RY P
Sbjct: 19 PNMFIP-GEKVCDIEDSIY-SHNTYPHNTSIHSSVLGTLTRINKLVMIEPCTRYRYIPLA 76
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GDI++GRV + KRWK+E N + IL L+++ LPD QRR+ DE+ M S F +D+
Sbjct: 77 GDIIVGRVAMLSVKRWKIEANAQLECILNLTTIALPDNAQRRKLEQDEMLMHSFFDVDDV 136
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGC 210
+ AE++ GS L RN++YGKL G L V V + F +E + ++G
Sbjct: 137 LVAEIQKVNV-GSAVLSTRNERYGKLTNGVLKIVPLCAVGSYRSSF--VENEQLRFVVGA 193
Query: 211 NGYIWI 216
NGY++I
Sbjct: 194 NGYVFI 199
>gi|124505351|ref|XP_001351417.1| exosome complex exonuclease rrp4, putative [Plasmodium falciparum
3D7]
gi|6562740|emb|CAB62879.1| exosome complex exonuclease rrp4, putative [Plasmodium falciparum
3D7]
Length = 338
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
+D LKG G ++ A + G V INKLIYV L+ +Y GD+++G++ ++ +
Sbjct: 64 KDRFLKGGGLYEEDDMFYACILGRVNYINKLIYVEPLKGKYTGSVGDLLVGKIKDISNDK 123
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W +EI A L +S N+ QR R D +NM I+ +D++ E++ DG++
Sbjct: 124 WIVEIGSYCRAYLSISQTNISIFSQRIRLYNDVINMIHIYKPDDIIACEIQRISTDGTII 183
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVE 221
L R+ YGKL G L+ V L+ +K+H + + +I+G NGYIWI ++
Sbjct: 184 LHTRSSIYGKLSNGVLIIVPQTLIHNQKKHI-FVFPCNVQIILGMNGYIWISSPIK 238
>gi|388504398|gb|AFK40265.1| unknown [Medicago truncatula]
Length = 102
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 73/102 (71%)
Query: 226 MVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEV 285
MV DQ + S+ + +KNS+ L+EQ+ T E R+ ICR ANA+R LS LGF IT E+
Sbjct: 1 MVEDQVNQSDPQVLTPNKNSVSLEEQEKKYTALETRKYICRAANAVRGLSTLGFIITSEI 60
Query: 286 ILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRSLSKRKR 327
I ++LS S NLDIHDMLGSEF VLVAE EAERRS +K+KR
Sbjct: 61 IRGVIDLSLSANLDIHDMLGSEFCVLVAEKEAERRSSNKKKR 102
>gi|392341107|ref|XP_003754250.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP4-like
[Rattus norvegicus]
Length = 274
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 6/187 (3%)
Query: 40 DTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVI 99
DTI G ++G GT Q+ L VCG++ +L R R GDIV+ R+I
Sbjct: 14 DTISTDTTGFMRGRGTYMQEENL--IVCGLLR--TELTNXSVPRKRICGVVGDIVVARII 69
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
++ KR K+E N D++L+ SSMNLP G RRR+ + +R FTE L+ EV++
Sbjct: 70 DIQQKRRKMETNSRLDSVLLPSSMNLPRGELRRRSVENVWAVRGFFTEGKLISMEVQAVF 129
Query: 160 GDGSLQLQARNQKYGKLERG-QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGE 218
DG++ L R+ K+GK+ +G ++ L+KR K H H+L G L +G N +IWI
Sbjct: 130 SDGAVSLHTRSLKHGKVGQGVXSMSRLSALMKRHKTHCHNL-PCGASLFLGNNSFIWIYP 188
Query: 219 HVEARDK 225
E +D+
Sbjct: 189 TPEHKDE 195
>gi|253744947|gb|EET01073.1| Hypothetical protein GL50581_1653 [Giardia intestinalis ATCC 50581]
Length = 260
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 7/176 (3%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVR-ALRARYKPETGDIVIGRVIEVVPKRWKL 108
L G G + A+V G ++ + K++ V+ + Y+P T D+++GRVI ++P +W L
Sbjct: 34 LPGQGVVKAEESFIASVVGNMKHVGKIVSVQPSCLHIYEPATADVILGRVIRLLPNKWVL 93
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+I Q+A L + +MN+P GIQR R DE NMR + L+ EV+ QG L
Sbjct: 94 DIGAVQNATLHIDNMNIP-GIQRVRDTADESNMRQWLDVDQLISCEVK--QG---YALLT 147
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARD 224
R+ ++G L G L+ V P V F +L+ + +I+G NG+IW+ E A D
Sbjct: 148 RSAQFGVLNHGILVKVPPCAVGPSTNAFANLDPLNVHVILGRNGWIWLSEMRSAND 203
>gi|378756023|gb|EHY66048.1| hypothetical protein NERG_00744 [Nematocida sp. 1 ERTm2]
Length = 209
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 45 YEDGILKGHGTS---DQKGE--LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVI 99
Y D L+GHG D K E +++ G V+++++LI V A Y P GDIV+GRV
Sbjct: 12 YTDDCLEGHGIYKELDSKNEEIFVSSIAGTVKQVDRLITVEANTYWYTPGVGDIVVGRVT 71
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
+ KRW +EIN Q+AIL+L++++L +QRR+ +DE+ M ++ D+V AEV+S+
Sbjct: 72 GIANKRWYIEINSRQEAILLLNAISLIGNVQRRKGELDEIMMTEYYSIGDIVIAEVQST- 130
Query: 160 GDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQ-HFHHLEEYGIDLIIGCNGY 213
+QL R+ +Y K+ G L+ ++ + Q H + ++++IG NGY
Sbjct: 131 -GNKIQLHTRSSRYRKISFGVLIKLENISSENGVQYHKEKINGKEVEIVIGKNGY 184
>gi|159113511|ref|XP_001706982.1| Hypothetical protein GL50803_33022 [Giardia lamblia ATCC 50803]
gi|157435083|gb|EDO79308.1| hypothetical protein GL50803_33022 [Giardia lamblia ATCC 50803]
Length = 262
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 39 GDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVR-ALRARYKPETGDIVIGR 97
G+ +P + L G G A+V G ++++ K++ V+ + Y+P T D+V+GR
Sbjct: 23 GEELPGVPNTSLPGQGVVRVDESFVASVVGNMKQVGKIVSVQPSCLHIYEPVTADVVLGR 82
Query: 98 VIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRS 157
V+ ++P +W L+I Q A L + ++N+P GIQR R DE NMR + L+ EV+
Sbjct: 83 VVRLLPNKWVLDIGAIQHATLHIDNLNIP-GIQRVRDTADESNMRQWLDVDQLISCEVK- 140
Query: 158 SQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIG 217
QG L R+ ++G L G L+ V P V F +L+ + +I+G NG+IWI
Sbjct: 141 -QG---YALLTRSAQFGVLNHGVLVKVPPCAVGPSTTAFANLDSLNVHVILGRNGWIWIS 196
Query: 218 E 218
E
Sbjct: 197 E 197
>gi|308161988|gb|EFO64417.1| RRP4-related protein [Giardia lamblia P15]
Length = 267
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVR-ALRARYKPETGDIVIGRVIEVVPKRWKL 108
L G G A+ G+++R+ K++ V+ + Y+P T D+V+GRV+ ++P +W L
Sbjct: 34 LPGQGVVQVDESFVASAVGIMKRVGKIVSVQPSCLHIYEPVTADVVLGRVVRLLPNKWVL 93
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+I Q A L + ++N+P GIQR R DE NMR + L+ E++ QG L
Sbjct: 94 DIGAIQHATLHIDNLNIP-GIQRVRDTADESNMRQWLDVDQLISCEIK--QG---YALLT 147
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARD 224
R+ ++G L G L+ V P V F +L+ + +I+G NG+IW+ E + D
Sbjct: 148 RSAQFGVLNHGILVKVPPCAVGPSTTAFANLDPLNVHVILGRNGWIWLSEMRDPSD 203
>gi|385303806|gb|EIF47857.1| exosome complex exonuclease rrp4 [Dekkera bruxellensis AWRI1499]
Length = 157
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 65/96 (67%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
++GHGT + + V GV+ R+N L+ V + RY PETGD V+GR+++V KRWK++
Sbjct: 56 MRGHGTYYLGEKTYSAVAGVILRVNXLLSVIPFKGRYNPETGDHVVGRIVDVTNKRWKVD 115
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
+ DA+LML ++NLP G+ RR++ DEL MRS F
Sbjct: 116 VGAEHDAVLMLGAVNLPGGVLRRKSETDELQMRSFF 151
>gi|361124035|gb|EHK96159.1| putative Exosome complex component rrp4 [Glarea lozoyensis 74030]
Length = 222
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Query: 35 CVTVGDTIPVYEDGILKGHGT-SDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
VT G+ + ED ++GHGT + E+ ATV G V++ NKL+ VR LRARY PE GD+
Sbjct: 51 IVTPGEVV-TDEDQWMRGHGTYHNHAREIIATVAGTVQKTNKLLSVRPLRARYTPEIGDL 109
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRS 143
V+GR++EV K+W++++ A L LS++NLP GI R+RT DEL +++
Sbjct: 110 VVGRIVEVQSKKWRVDVGAPVLASLPLSAINLPGGILRKRTETDELQIQT 159
>gi|193786851|dbj|BAG52174.1| unnamed protein product [Homo sapiens]
Length = 181
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 123 MNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLL 182
MNLP G RRR+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+
Sbjct: 1 MNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLV 60
Query: 183 TVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
V P LVKR+K HFH L G +I+G NG+IWI E +++
Sbjct: 61 QVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEHKEE 102
>gi|156089551|ref|XP_001612182.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799436|gb|EDO08614.1| conserved hypothetical protein [Babesia bovis]
Length = 262
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 1/192 (0%)
Query: 39 GDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRV 98
GD + +L+G GT G L A+ G +++N+L YV L +Y + GD+V+G V
Sbjct: 10 GDVVNTRASSLLQGRGTYVDNGVLRASFLGTFKQVNQLAYVEPLHGKYFAQVGDVVVGVV 69
Query: 99 IEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSS 158
+ W ++I + L + +N + RR+ D MR++F ++ EV+
Sbjct: 70 QRIGGNCWYIDIGSSMRVQLSIFQVNTEELATRRKLDEDVYEMRNLFGIGHVISCEVQRV 129
Query: 159 QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGE 218
+G++ LQ R KYG+L G L+ V P L+ R+ +H L GI +I+GCNG+IW+G
Sbjct: 130 SPNGTVLLQTRTSKYGRLNNGILVKVKPNLMLRQSKHMQEL-SCGISMILGCNGFIWLGP 188
Query: 219 HVEARDKMVVDQ 230
++ D + Q
Sbjct: 189 IQKSGDATIHAQ 200
>gi|124359808|gb|ABN06126.1| Nucleic acid-binding, OB-fold [Medicago truncatula]
Length = 138
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 76/130 (58%), Gaps = 35/130 (26%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKG 60
MR QL F+Q QK+RL+KAL++LESLSS S+ +L TS
Sbjct: 1 MRGNQLQFSQFQKLRLQKALDKLESLSSDSS-----------------VLWSVLTST--- 40
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
++VR+L +RYKP+ GDIVIGRVIEV RW+L+IN Q+A +ML
Sbjct: 41 ---------------YVFVRSLLSRYKPKAGDIVIGRVIEVGQNRWRLDINCGQNAYMML 85
Query: 121 SSMNLPDGIQ 130
S+MN+PDG+Q
Sbjct: 86 SAMNMPDGLQ 95
>gi|414584981|tpg|DAA35552.1| TPA: hypothetical protein ZEAMMB73_927289 [Zea mays]
Length = 526
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 5/85 (5%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
M++ L+ NQTQ+VRLE AL+ L+S++ + VTV DTIPV ED ILKGHGTSDQ
Sbjct: 1 MKDRHLALNQTQRVRLEAALQELQSVAPAAA----VTVADTIPVNQEDNILKGHGTSDQD 56
Query: 60 GELAATVCGVVERINKLIYVRALRA 84
GE+ AT+CGVVER+NKL+YVR LRA
Sbjct: 57 GEVVATLCGVVERVNKLVYVRTLRA 81
>gi|308081851|ref|NP_001183320.1| uncharacterized protein LOC100501721 [Zea mays]
gi|238010760|gb|ACR36415.1| unknown [Zea mays]
Length = 526
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 5/85 (5%)
Query: 1 MRNLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVGDTIPV-YEDGILKGHGTSDQK 59
M++ L+ NQTQ+VRLE AL+ L+S++ + VTV DTIPV ED ILKGHGTSDQ
Sbjct: 1 MKDRHLALNQTQRVRLEAALQELQSVAPAAA----VTVADTIPVNQEDNILKGHGTSDQD 56
Query: 60 GELAATVCGVVERINKLIYVRALRA 84
GE+ AT+CGVVER+NKL+YVR LRA
Sbjct: 57 GEVVATLCGVVERVNKLVYVRTLRA 81
>gi|387595692|gb|EIJ93315.1| hypothetical protein NEPG_01657 [Nematocida parisii ERTm1]
Length = 209
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 45 YEDGILKGHGT-SDQKGE----LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVI 99
Y D L+GHG + GE +++ G V+++++LI + A Y P GD+V+G V
Sbjct: 12 YTDDCLEGHGIYKEMSGENEEMFISSIAGTVKQVDRLITIEADTYWYTPGVGDVVVGWVT 71
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
+ KRW +EIN QD +L+L+S+NL +QRR+ +DE+ M ++ D+V AEV+S+
Sbjct: 72 GIANKRWYVEINSRQDTVLLLNSINLIGNVQRRKGELDEIMMSEYYSIGDIVIAEVQST- 130
Query: 160 GDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQ-HFHHLEEYGIDLIIGCNGYI 214
+QL R+ KY K+ G L+ ++ + R Q H + I+++IG NGY+
Sbjct: 131 -GNKIQLHTRSSKYRKISFGVLIKLEGAVTDNRGQYHKQTVNGKEIEIVIGKNGYV 185
>gi|387594107|gb|EIJ89131.1| hypothetical protein NEQG_00950 [Nematocida parisii ERTm3]
Length = 209
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 45 YEDGILKGHGT-SDQKGE----LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVI 99
Y D L+GHG + GE +++ G V+++++LI + A Y P GD+V+G VI
Sbjct: 12 YTDDCLEGHGIYKEMSGENEEMFISSIAGTVKQVDRLITIEADTYWYTPGVGDVVVGWVI 71
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
+ KRW +EIN QD +L+L+S+NL +QRR+ +DE+ M ++ D+V AEV+S+
Sbjct: 72 GIANKRWYVEINSRQDTVLLLNSINLIGNVQRRKGELDEIMMSEYYSIGDIVIAEVQST- 130
Query: 160 GDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQ-HFHHLEEYGIDLIIGCNGYI 214
+QL R+ KY K+ G L+ ++ + R Q H + I+++IG NGY+
Sbjct: 131 -GNKIQLHTRSSKYRKISFGVLIKLEGAVTDNRGQYHKQTVNGKEIEIVIGKNGYV 185
>gi|256052273|ref|XP_002569699.1| rrp4 [Schistosoma mansoni]
gi|350645156|emb|CCD60164.1| rrp4, putative [Schistosoma mansoni]
Length = 267
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 101/214 (47%), Gaps = 29/214 (13%)
Query: 98 VIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRS 157
VI V +RW++++N A L L+++ LP G RR++ DE MRS E DL+ AEV
Sbjct: 10 VIPVEQRRWRVDVNSALLANLALANVKLPGGELRRKSEDDERAMRSFMKEGDLIVAEVHE 69
Query: 158 SQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL----------------EE 201
DG+LQL + GKL G LL + P L+KR+K H H L E
Sbjct: 70 VYKDGTLQLHMPGTRTGKLGGGCLLRIPPSLIKRQKIHRHRLAIPRMDTLDGPITISNEV 129
Query: 202 YGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREAR 261
+ LI+GCNGYIW G AR M + G ++ + D N+ + E R
Sbjct: 130 ISVGLILGCNGYIWTG---PAR-AMDIGLGLSAP---VEADLNTANESELLAE------R 176
Query: 262 QNICRIANAIRVLSRLGFNITVEVILETVNLSNS 295
+CR+ N I L+ G + +L S S
Sbjct: 177 IAVCRVRNCILALTHNGMPVWETSVLTACEASWS 210
>gi|269860951|ref|XP_002650192.1| exosome complex exonuclease RRP4 [Enterocytozoon bieneusi H348]
gi|220066366|gb|EED43850.1| exosome complex exonuclease RRP4 [Enterocytozoon bieneusi H348]
Length = 222
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 4/166 (2%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRAL-RARYKPETGDIVIGRVIEVVPKRWKLEI 110
G G S+ L +TV G+ +++N +I R L +Y P GDI+IGR+IE+ K+WK++
Sbjct: 22 GVGISNINQCLCSTVFGIPQKLNTIIISRPLFYFKYTPNVGDIIIGRIIEIFNKKWKVDC 81
Query: 111 NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN 170
N ++ L L ++ LP IQRR++ DE +MR ++ NDLV EV+ + + L
Sbjct: 82 NSYYESTLSLGAIFLPGDIQRRKSKDDETSMRCLYQLNDLVICEVQKITKNNMVTLNPYM 141
Query: 171 QKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
KY LE G L V L+K+ K E IIG NGY+WI
Sbjct: 142 DKYSSLEEGILFKVPIMLMKKNKSVIELAECVA---IIGSNGYVWI 184
>gi|361066957|gb|AEW07790.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130920|gb|AFG46230.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130922|gb|AFG46231.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130924|gb|AFG46232.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130926|gb|AFG46233.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130928|gb|AFG46234.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130930|gb|AFG46235.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130932|gb|AFG46236.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130934|gb|AFG46237.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130936|gb|AFG46238.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130938|gb|AFG46239.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130940|gb|AFG46240.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
gi|383130942|gb|AFG46241.1| Pinus taeda anonymous locus 0_11598_01 genomic sequence
Length = 82
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 51/66 (77%)
Query: 256 TPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAES 315
TP R+NICR+ANAIRVLS LGF +++E+IL+T +S N+DI DML EFYV +AE
Sbjct: 9 TPLRVRENICRLANAIRVLSALGFTLSLELILDTFQMSIEWNIDIKDMLAGEFYVRIAER 68
Query: 316 EAERRS 321
EAERRS
Sbjct: 69 EAERRS 74
>gi|224131320|ref|XP_002321055.1| predicted protein [Populus trichocarpa]
gi|222861828|gb|EEE99370.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 25/105 (23%)
Query: 217 GEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSR 276
GEHV+AR+ + D +N+EQ K + NAI +LS
Sbjct: 5 GEHVDARENISEDPLNNTEQQHTKSN-------------------------TNAIPILST 39
Query: 277 LGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRS 321
LGFN+T+EV+LET NLS++LNL I +MLGSEF+V+VAE EAERR+
Sbjct: 40 LGFNLTLEVMLETSNLSSTLNLAIDEMLGSEFHVMVAEREAERRT 84
>gi|67609946|ref|XP_667071.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|126654521|ref|XP_001388431.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|54658162|gb|EAL36838.1| hypothetical protein Chro.80348 [Cryptosporidium hominis]
gi|126117371|gb|EAZ51471.1| hypothetical protein cgd8_2980 [Cryptosporidium parvum Iowa II]
Length = 144
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLE 200
M+SI E D++C EV+ Q +G L R+ KYGKL G ++ V L++R+ QH L
Sbjct: 1 MKSILDEGDVICTEVQRVQSEGICHLHTRSAKYGKLANGMVVKVPNKLIQRQAQHIVKL- 59
Query: 201 EYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNS 234
+YGI LI+G NGY+WI E ++ S+S
Sbjct: 60 KYGIQLILGLNGYVWISLPFEHSHTDTLNYSSSS 93
>gi|156371056|ref|XP_001628582.1| predicted protein [Nematostella vectensis]
gi|156215562|gb|EDO36519.1| predicted protein [Nematostella vectensis]
Length = 214
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 62/132 (46%), Gaps = 46/132 (34%)
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY E GD+V+GR+ EV KRWK+E D++LMLSS+NLP G EL
Sbjct: 40 RYNGEIGDVVVGRITEVGQKRWKVETFSKLDSVLMLSSVNLPGG---------EL----- 85
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGI 204
L+ G L+ + P +VKR K HFH+L G
Sbjct: 86 -------------------------------LKHGTLVKIPPTMVKRCKTHFHNL-PCGA 113
Query: 205 DLIIGCNGYIWI 216
+IIG NGYI++
Sbjct: 114 TVIIGNNGYIFL 125
>gi|444519250|gb|ELV12688.1| Tyrosine-protein kinase ABL1 [Tupaia chinensis]
Length = 959
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A +RL + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKRLSESLGRETKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEV 101
+NKLI V+AL+ RY E GDIV+GR+ E+
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEL 91
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 175 KLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI---GEHVE 221
+L +G L+ V P LVKR+K HFH L G +I+G NG+IWI EH E
Sbjct: 90 ELGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIYPTPEHKE 138
>gi|57641570|ref|YP_184048.1| exosome complex RNA-binding protein Rrp4 [Thermococcus kodakarensis
KOD1]
gi|73919275|sp|Q5JIR5.1|ECR1_PYRKO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|57159894|dbj|BAD85824.1| exosome subunit Rrp4p homolog, RNA-binding protein [Thermococcus
kodakarensis KOD1]
Length = 257
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+VE +I V L Y PE GD V+G++++V W ++I
Sbjct: 26 GRGTFREGNAIYSTVIGLVEIRGNVIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDEL--NMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
A S+ + D ++ R +D L ++R IF D++ A+V++ + L +
Sbjct: 86 APYQA-----SLRVQDAVEER---IDLLKTDLRKIFDIGDIIYAKVKAFNEVNQIDLTTK 137
Query: 170 NQKY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEA 222
+ G L GQL+T+ P L+ + + ++ G +I+G NG++W+ +
Sbjct: 138 GMPFKGGPLRGGQLVTITPSKVPRLIGKGGSMINMIKTLTGTRIIVGQNGWVWVSGKNDE 197
Query: 223 RDKMVVDQGSNSEQLIAKCDKNS 245
+++ ++ I K D+ S
Sbjct: 198 LERLAIEA-------ILKVDRES 213
>gi|223477967|ref|YP_002582205.1| putative exosome complex RNA-binding protein 1 [Thermococcus sp.
AM4]
gi|214033193|gb|EEB74021.1| Probable exosome complex RNA-binding protein 1 [Thermococcus sp.
AM4]
Length = 254
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+VE LI V L Y PE GD V+G++++V W ++I
Sbjct: 26 GRGTFREGNRIYSTVVGLVEVRGDLIRVIPLEGPYIPEVGDNVLGKIVDVRFSNWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDEL--NMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
A ++ + D ++ R +D L ++R I+ D++ A++++ + L +
Sbjct: 86 APYQA-----NLRVQDAVEER---IDLLKTDLRKIYDIGDIIYAKIKAYNEVNQIDLTTK 137
Query: 170 NQKY--GKLERGQLLTVDPYLVKR----RKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEA 222
+ G L GQL+T+ P V R + +++ G +I+G NG++W+ +
Sbjct: 138 GMPFKGGPLRGGQLVTITPSKVPRVIGKGGSMINMIKKLTGTRIIVGQNGWVWVSGKNDE 197
Query: 223 RDKMVVDQGSNSEQLIAKCDKNS 245
+K+ V+ I K D+ S
Sbjct: 198 LEKLAVEA-------ILKVDRES 213
>gi|242399327|ref|YP_002994751.1| Probable exosome complex RNA-binding protein 1 [Thermococcus
sibiricus MM 739]
gi|242265720|gb|ACS90402.1| Probable exosome complex RNA-binding protein 1 [Thermococcus
sibiricus MM 739]
Length = 251
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + L ++V G+V N + V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFKEGNRLYSSVVGLVRVSNDTVSVVPLEGPYIPEVGDTVIGKIVDVKFSNWIVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + R V + ++R IF D++ A++++ + L +
Sbjct: 86 APYQAGLRVQD------VIEGRVDVLKTDLRKIFDIGDIIYAKIKAYNEINQIDLITKGM 139
Query: 172 KY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEARD 224
+ G L+ GQL+ + P L+ + + ++ G +I+G NG++W+ E +
Sbjct: 140 PFNGGPLKGGQLVKITPSKVPRLIGKGGSMINMIKNLTGTRIIVGQNGWVWVSGRKEELE 199
Query: 225 KMVVD 229
K+ ++
Sbjct: 200 KLAIE 204
>gi|390960834|ref|YP_006424668.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. CL1]
gi|390519142|gb|AFL94874.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. CL1]
Length = 256
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+VE I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFREGNRIYSTVVGLVEIRGDTIRVIPLEGPYIPEVGDNVIGKIVDVRFSNWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A S+ + D ++ R + + ++R IF D++ A++++ + L +
Sbjct: 86 APYQA-----SLRVQDAVE-ERIDLAKTDLRKIFDIGDIIYAKIKAYNEVNQIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWIGEHVEARD 224
+ G L GQ++ + P V R + + G +I+G NG++W+ E +
Sbjct: 140 PFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTRIIVGQNGWVWVSGKKEELE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K D+ S
Sbjct: 200 KLAIEA-------ILKVDRES 213
>gi|119872349|ref|YP_930356.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum islandicum
DSM 4184]
gi|119673757|gb|ABL88013.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum islandicum DSM
4184]
Length = 231
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 14/191 (7%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P V GD + E + +G D G+ + V G+VE ++ + L Y+P+ G
Sbjct: 6 PRQLVFPGDVVATAESRV-EGPVYLDN-GKYRSLVVGLVEFREDVVVIVPLEGTYRPKKG 63
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D+V+G V +V+ W++++ A L +S + ++ + + D++
Sbjct: 64 DLVVGYVTDVLATGWEVDVRSFMPAYLPVSEA------LHKHVDLETTPLTTFLNIGDVI 117
Query: 152 CAEVRSS--QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR----RKQHFHHLEEYGID 205
A+V+ + + L + +K GK+ERG ++ + P V R + + L E G D
Sbjct: 118 VAKVKDVDLTDEYPIILTLKEEKVGKVERGTVIEISPVKVPRVIGKKGSMLNTLMELGCD 177
Query: 206 LIIGCNGYIWI 216
+I+G NG IWI
Sbjct: 178 IIVGQNGRIWI 188
>gi|240104094|ref|YP_002960403.1| exosome complex RNA-binding protein Rrp4 [Thermococcus
gammatolerans EJ3]
gi|239911648|gb|ACS34539.1| Exosome complex RNA-binding protein 1, Rrp4p-like protein (Rrp4p)
[Thermococcus gammatolerans EJ3]
Length = 254
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 24/203 (11%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+VE LI V L Y PE GD V+G++++V W ++I
Sbjct: 26 GRGTFREGNRIYSTVVGLVEIRGDLIRVIPLEGPYIPEVGDNVLGKIVDVRFSNWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDEL--NMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
A ++ + D ++ R +D L ++R I+ D++ A++++ + L +
Sbjct: 86 APYQA-----NLRVQDAVEER---IDLLKTDLRKIYDIGDIIYAKIKAYNEVNQIDLTTK 137
Query: 170 NQKY--GKLERGQLLTVDPYLVKRRKQHFHHLEEY-----GIDLIIGCNGYIWIGEHVEA 222
+ G L GQL+T+ P V R + G +I+G NG++W+ +
Sbjct: 138 GMPFKGGPLRGGQLVTITPSKVPRVIGKGGSMINMIKRLTGTRIIVGQNGWVWVSGKNDE 197
Query: 223 RDKMVVDQGSNSEQLIAKCDKNS 245
+K+ V+ I K D+ S
Sbjct: 198 LEKLAVEA-------ILKVDRES 213
>gi|374325949|ref|YP_005084149.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum sp. 1860]
gi|356641218|gb|AET31897.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum sp. 1860]
Length = 235
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 14/192 (7%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
P + GD I D ++G D G + V G+VE + V L YKP+
Sbjct: 5 TPRQLIFPGDVIAT-TDSKVEGPVYVDN-GRYRSLVVGLVEFREDGVVVVPLEGTYKPKK 62
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+V+G V +V+ W++++ A L +S R ++ + + D+
Sbjct: 63 GDVVVGYVTDVLATGWEIDVRSFMPAYLPVSEA------LHRHVDLETTPLTTFLNIGDV 116
Query: 151 VCAEVRSSQ--GDGSLQLQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEYGI 204
V A+V+ + + L + ++ GK+E G ++ + P L+ +R + L E G
Sbjct: 117 VIAKVKDVDLTDEYPIILTLKEERVGKVESGTVVEITPVKVPRLIGKRGSMLNTLMEVGC 176
Query: 205 DLIIGCNGYIWI 216
D+I+G NG +WI
Sbjct: 177 DIIVGQNGRVWI 188
>gi|212223174|ref|YP_002306410.1| exosome complex RNA-binding protein Rrp4 [Thermococcus onnurineus
NA1]
gi|212008131|gb|ACJ15513.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 256
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+VE I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFREGNRIYSTVVGLVEIRGDAIRVIPLEGPYIPEVGDNVIGKIVDVKFSNWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A ++ + D ++ R V + ++R IF D++ A++++ + L +
Sbjct: 86 APYQA-----NLRVQDAVE-ERIDVLKTDLRKIFDIGDIIYAKIKAYNEINQIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWIGEHVEARD 224
+ G L GQ++ + P V R + + G +I+G NG++W+ E +
Sbjct: 140 PFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTRIIVGQNGWVWVSGKKEELE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K D+ S
Sbjct: 200 KLAIEA-------ILKVDRES 213
>gi|424814252|ref|ZP_18239430.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalina sp.
J07AB43]
gi|339757868|gb|EGQ43125.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalina sp.
J07AB43]
Length = 231
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 12/189 (6%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGD 92
N V GD I ED + G ++G++ + G V+ + + V+ + RY PE GD
Sbjct: 8 NDIVVPGDVI-TEEDNVKPNSGVYTEEGKIYSQHIGTVKYGSGNVRVQPMDGRYIPEEGD 66
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
+VI V V RW L+++ + L +S + + +DE ++ + D V
Sbjct: 67 VVIAEVTRVSYSRWNLDMDSPYEGTLDISEAS------DQYVDLDEDDLTDFYDVGDAVV 120
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHL-EEYGIDLI 207
A+V S + L + + KLE G+++ + P+ ++ R+ + E+ +I
Sbjct: 121 AKVTSVSESMDVDLTMLDDRCRKLEEGRIINISPHKVPRVIGRQGTMVQQINEKTNCHVI 180
Query: 208 IGCNGYIWI 216
+G NG +WI
Sbjct: 181 VGQNGLVWI 189
>gi|147919676|ref|YP_686580.1| exosome complex RNA-binding protein Rrp4 [Methanocella arvoryzae
MRE50]
gi|110621976|emb|CAJ37254.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 226
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
ED L HGT Q G++ A G+V+R N I V L RY P GD+VIG+V +V
Sbjct: 15 EDPKLASHGTYVQDGKVYAANFGLVDRRNS-IKVIPLSGRYIPARGDLVIGKVTDVTFSN 73
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W ++IN + +L S P+ VD+ NM E +L+ A++ ++
Sbjct: 74 WIVDINSPYEGLLHASE--YPE-------RVDQNNMTKYLHEGELIIAKISDVDPSMKVE 124
Query: 166 LQARNQKYGKLERGQLLTVD----PYLVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
L R + L+ G+++ + P ++ R L ++ + +G NG IW+
Sbjct: 125 LTLREEHLKILKDGRVIEISHVKIPRVIGRNGSMIKMLMKDLDCSIFVGQNGRIWL 180
>gi|341582109|ref|YP_004762601.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. 4557]
gi|340809767|gb|AEK72924.1| exosome complex RNA-binding protein Rrp4 [Thermococcus sp. 4557]
Length = 256
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+VE I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFREGNRIYSTVVGLVEIRGDTIRVIPLEGPYIPEVGDNVIGKIVDVRFSNWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + R + + ++R IF D++ A +++ + L +
Sbjct: 86 APYQAGLRVQDAT------EERIDLAKTDLRRIFDIGDIIYARIKAYNEINQIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWIGEHVEARD 224
+ G L GQ++ + P V R + + G +I+G NG++W+ E +
Sbjct: 140 PFRGGPLRGGQIVEITPSKVPRLIGKGGSMINLIKKLTGTRIIVGQNGWVWVSGKNEELE 199
Query: 225 KMVVD 229
K+ +D
Sbjct: 200 KLAID 204
>gi|315229926|ref|YP_004070362.1| exosome complex RNA-binding protein 1 [Thermococcus barophilus MP]
gi|315182954|gb|ADT83139.1| exosome complex RNA-binding protein 1 [Thermococcus barophilus MP]
Length = 255
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ N I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFKEGNRIYSTVVGLVDIRNDFIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDEL--NMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
A L + D ++ + +D L ++R IF D++ A+V++ + L +
Sbjct: 86 APYQATLRIQ-----DAVEEK---IDLLKTDLRKIFDIGDIIYAKVKAFNEVNQIDLTTK 137
Query: 170 NQKY--GKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWIGEHVEA 222
+ G L+ GQ++ + P V R + + +I+G NG++W+ E
Sbjct: 138 GMPFNGGPLKGGQIVKITPSKVPRLIGKGGSMINLIKKMTQTRIIVGQNGWVWVSGRKEE 197
Query: 223 RDKMVVDQGSNSEQLIAKCDKNS 245
+++ ++ I K D+ S
Sbjct: 198 LERVAIEA-------ILKVDRES 213
>gi|409096214|ref|ZP_11216238.1| exosome complex RNA-binding protein Rrp4 [Thermococcus zilligii
AN1]
Length = 258
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+VE I V L Y PE GD V+G++++V W ++I
Sbjct: 26 GKGTFREGNRVYSTVVGLVEIRGDTIKVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDE------LNMRSIFTENDLVCAEVRSSQGDGSLQ 165
A L R + AV+E ++R IF D++ A+V++ +
Sbjct: 86 APYQATL------------RAQDAVEEKIDLLKTDLRKIFDIGDIIYAKVKAFDEVNQID 133
Query: 166 LQARNQKY--GKLERGQLLTVD----PYLVKRRKQHFHHLEEY-GIDLIIGCNGYIWI 216
L + + G L GQL+T+ P ++ + + +++ G +I+G NG++W+
Sbjct: 134 LTTKGMPFNGGPLRGGQLVTITSSKVPRVIGKGGSMINMIKKLTGTRIIVGQNGWVWV 191
>gi|327400937|ref|YP_004341776.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
SNP6]
gi|327316445|gb|AEA47061.1| exosome complex RNA-binding protein 1 [Archaeoglobus veneficus
SNP6]
Length = 231
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 15/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + G++ A + G++++ + + + L+ RY P TGDIVIG V EV W ++I
Sbjct: 20 GYGTYVENGKVYAKILGLLDKSDTGVRIIPLKGRYIPSTGDIVIGIVREVTANGWVVDIY 79
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L L + P+ R+ + I D V A+V + + L +++
Sbjct: 80 SPYQAFLPL--LEYPETRNRK--------VNEILDIGDAVIAKVLNIDPKMKVTLTMKDK 129
Query: 172 KYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
+ G+++ ++P V R +K L E G+ +I+G NG IW+
Sbjct: 130 VCRPVRVGRIVAINPARVPRVIGKKGSMIRLLKSELGVQIIVGQNGLIWL 179
>gi|383319306|ref|YP_005380147.1| RNA-binding protein Rrp4 and related protein [Methanocella conradii
HZ254]
gi|379320676|gb|AFC99628.1| RNA-binding protein Rrp4 and related protein [Methanocella conradii
HZ254]
Length = 224
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
ED L G GT Q G + + G+V+R I V L RY P GD+VIG+V++V
Sbjct: 14 EDPKLAGSGTYVQGGRVYSANYGLVDRRTN-IRVIPLSGRYIPARGDLVIGKVVDVTFSN 72
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W ++IN + +L +S P+ VD NM +L+ A V ++
Sbjct: 73 WIIDINSPYEGLLHVSE--YPE-------RVDPANMSKCLHVGELIIARVADVDPSMKVE 123
Query: 166 LQARNQKYGKLERGQLLTVD----PYLVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
L R++ L++G+++ + P ++ R L ++ + + +G NG IW+
Sbjct: 124 LTMRDEHLKVLKQGRVVDISHVKIPRVIGRNGSMISMLKKDLNVSIFVGQNGRIWL 179
>gi|14520825|ref|NP_126300.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus abyssi GE5]
gi|29337011|sp|Q9V120.1|ECR1_PYRAB RecName: Full=Probable exosome complex RNA-binding protein 1
gi|5458041|emb|CAB49531.1| Predicted exosome subunit, RNA-binding protein rrp4 [Pyrococcus
abyssi GE5]
gi|380741367|tpe|CCE70001.1| TPA: exosome complex RNA-binding protein Rrp4 [Pyrococcus abyssi
GE5]
Length = 265
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + I RT ++R F D++ A+V++ ++ L +
Sbjct: 86 APYPANLKIQDFT-DEKIDLLRT-----DLRKFFDIGDIIYAKVKAITEVNNIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L+ GQ++ + P ++ R + +++ + +I+G NG+IW+ +A +
Sbjct: 140 PFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIWVSGKNDALE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K DK S
Sbjct: 200 KLAIEA-------ILKIDKES 213
>gi|435852005|ref|YP_007313591.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Methanomethylovorans hollandica DSM 15978]
gi|433662635|gb|AGB50061.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Methanomethylovorans hollandica DSM 15978]
Length = 270
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 19/182 (10%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT ++G++ + + GV N+ I V +Y P D+VIG V E W +I
Sbjct: 20 GSGTYVKEGKVYSLLYGVANVKNR-ISVIPFSGKYIPSRKDLVIGTVFETTSSNWIFDIG 78
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSL--QLQAR 169
D +L +S RR V+ MR IF D CA +R D S+ +L R
Sbjct: 79 SPYDGLLHVSEY------PRR---VESSMMREIFNIGD--CAILRIKDVDASMKIELTLR 127
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWIGEHVEARD 224
+ K++ G+LL V P V R H + +E ++ +G NG IWI E D
Sbjct: 128 EKGLRKIKGGRLLEVPPTKVPRVIGHNGSMVSMLKKETDCEIFVGQNGRIWINGKDENMD 187
Query: 225 KM 226
K+
Sbjct: 188 KL 189
>gi|126459547|ref|YP_001055825.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum calidifontis
JCM 11548]
gi|126249268|gb|ABO08359.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum calidifontis JCM
11548]
Length = 235
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
G++ + V G+VE ++ + L YKP+ GD+VIG V +V+ W++++ A L
Sbjct: 32 GKIRSAVVGLVEFREDVVVIVPLDGVYKPKKGDLVIGYVTDVLATGWEVDVRTFMPAYLP 91
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ--GDGSLQLQARNQKYGKLE 177
+S + ++ + + D++ A+V+ + + L + ++ GK+E
Sbjct: 92 VSEA------LHKHVDLETTPLTTFLNIGDVIVAKVKDVDLTDEYPVVLTLKEERVGKVE 145
Query: 178 RGQLLTVDPYLVKR----RKQHFHHLEEYGIDLIIGCNGYIWI 216
G ++ + P V R + L E G D+++G NG IW+
Sbjct: 146 SGTVVEIAPVKVPRVVGKKGSMLAVLAEVGCDIVVGQNGRIWV 188
>gi|145592133|ref|YP_001154135.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum arsenaticum
DSM 13514]
gi|379003149|ref|YP_005258821.1| RNA-binding protein Rrp4 and related proteins (containing S1 domain
and KH domain) [Pyrobaculum oguniense TE7]
gi|145283901|gb|ABP51483.1| ribosomal RNA-processing protein RRP4 [Pyrobaculum arsenaticum DSM
13514]
gi|375158602|gb|AFA38214.1| RNA-binding protein Rrp4 and related proteins (containing S1 domain
and KH domain) [Pyrobaculum oguniense TE7]
Length = 232
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 32/201 (15%)
Query: 31 NPNSCVTVGDTI---------PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRA 81
P + GD I PVY D G + V G+VE + +
Sbjct: 5 TPRQLIFPGDVIATADKKVEGPVYLD-----------NGRYRSLVVGLVEFREDSVVIVP 53
Query: 82 LRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNM 141
L Y+P+ GD+V+G V +V+ W++++ A L +S + ++ +
Sbjct: 54 LEGTYRPKKGDVVVGYVTDVLATGWEVDVRSFMPAYLPVSEA------LHKHVDLETTPL 107
Query: 142 RSIFTENDLVCAEVRSSQ--GDGSLQLQARNQKYGKLERGQLLTVDPYLVKR----RKQH 195
+ D++ A+V+ + + L R +K GK+E G ++ + P + R +
Sbjct: 108 TTFLNVGDVIVAKVKDVDLTDEYPIVLTLREEKVGKVESGTVVDIAPVKIPRVIGKKGTM 167
Query: 196 FHHLEEYGIDLIIGCNGYIWI 216
+ L E G D+++G NG IWI
Sbjct: 168 LNTLLELGCDIVVGQNGRIWI 188
>gi|375082089|ref|ZP_09729159.1| exosome complex RNA-binding protein Rrp4 [Thermococcus litoralis
DSM 5473]
gi|374743302|gb|EHR79670.1| exosome complex RNA-binding protein Rrp4 [Thermococcus litoralis
DSM 5473]
Length = 251
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V N + V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFKEGNRIYSTVVGLVRISNDTVSVVPLEGPYIPEVGDSVIGKIVDVKFSNWVVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + D ++ + + + ++R +F D++ A+V++ + L +
Sbjct: 86 APYQATLRVQ-----DAVE-GKIDILKTDLRKLFDIGDIIYAKVKAFNEINQIDLITKGM 139
Query: 172 KY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEARD 224
+ G L+ GQL+ + P L+ + + ++ +I+G NG++W+ E +
Sbjct: 140 PFNGGPLKGGQLVKITPSKVPRLIGKGGSMINMIKNLTNTRIIVGQNGWVWVSGRNEELE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K D+ S
Sbjct: 200 KLAIEA-------ILKVDRES 213
>gi|337283873|ref|YP_004623347.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus yayanosii CH1]
gi|334899807|gb|AEH24075.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus yayanosii CH1]
Length = 257
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ LI V L Y PE GD VIG+V++V W ++I
Sbjct: 26 GRGTFREGSRIYSTVIGLVDIKGNLIRVIPLEGPYIPEVGDNVIGKVVDVKFSSWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + + + +++ F D++ A+V++ ++ L +
Sbjct: 86 APYQATLRIQDHT------DEKIDLIKTDLKKFFDIGDIIYAKVKAINEVNNIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L GQ++ + P L+ + + ++ + +I+G NG++WI E +
Sbjct: 140 PFNGGPLRGGQIVKITPSKVPRLIGKGGSMINMIKRLTMTRIIVGQNGWVWISGKKEELE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K D+ S
Sbjct: 200 KLAIEA-------ILKVDRES 213
>gi|389852858|ref|YP_006355092.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. ST04]
gi|388250164|gb|AFK23017.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. ST04]
Length = 264
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + I RT ++R F D++ A+V++ ++ L +
Sbjct: 86 APYPANLKIQDFT-DEKIDLIRT-----DLRKFFDIGDIIYAKVKAINEVNNIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPYLVKR----RKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L GQ++ + P V R + +++ + +I+G NG+IW+ +A +
Sbjct: 140 PFNGGPLRGGQIVKITPSKVPRVIGKGGSMINMIKKLTMSRIIVGQNGWIWVNSKNDALE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K D+ S
Sbjct: 200 KLAIEA-------ILKIDRES 213
>gi|254168272|ref|ZP_04875118.1| KH domain protein [Aciduliprofundum boonei T469]
gi|197622781|gb|EDY35350.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 230
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+G + G+L + G+V+ + V L Y P+ GD VIG++I++ P W ++IN
Sbjct: 24 GNGVFVENGKLYSAYLGIVDTRAGYVNVIPLSGCYVPKKGDKVIGKIIDLAPMNWVVDIN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L ++ + VD + + D++ A+V + G + + + Q
Sbjct: 84 APYYAPLHVNDVPW---------RVDFGDTGRYLSIGDVILAKVSNVNELGQVWITMKEQ 134
Query: 172 KYGKLERGQLLTVDPYLVKR----RKQHFHHLEEY-GIDLIIGCNGYIWI 216
KLE G ++ + P+ V R L++Y G + +G NG IWI
Sbjct: 135 GLRKLEGGHIIKISPFKVPRVIGKGGSMIQMLKDYTGCRIYVGQNGVIWI 184
>gi|332157780|ref|YP_004423059.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. NA2]
gi|331033243|gb|AEC51055.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus sp. NA2]
Length = 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ I V L Y PE GD VIG+V++V W ++I
Sbjct: 26 GRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKVVDVKFSSWVVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + I RT ++R F D++ A+V++ ++ L +
Sbjct: 86 APYPANLKIQDFT-DEKIDLLRT-----DLRKFFDIGDIIYAKVKAITEVNNIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L GQ++ + P ++ R + +++ + +I+G NG+IWI E +
Sbjct: 140 PFNGGPLRGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIWINGKNEYLE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K D+ S
Sbjct: 200 KLAIEA-------ILKIDRES 213
>gi|289595861|ref|YP_003482557.1| K-like, type 1, subgroup [Aciduliprofundum boonei T469]
gi|289533648|gb|ADD07995.1| K-like, type 1, subgroup [Aciduliprofundum boonei T469]
Length = 230
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+G + G+L + G+V+ + V L Y P+ GD VIG++I++ P W ++IN
Sbjct: 24 GNGVFVENGKLYSAYLGIVDIRAGYVNVIPLSGCYVPKKGDKVIGKIIDLAPMNWVVDIN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L ++ + VD + + D++ A+V + G + + + Q
Sbjct: 84 APYYAPLHVNDVPW---------RVDFGDTGRYLSIGDVILAKVSNVNELGQVWITMKEQ 134
Query: 172 KYGKLERGQLLTVDPYLVKR----RKQHFHHLEEY-GIDLIIGCNGYIWI 216
KLE G ++ + P+ V R L++Y G + +G NG IWI
Sbjct: 135 GLRKLEGGHIIKISPFKVPRVIGKGGSMIQMLKDYTGCRIYVGQNGVIWI 184
>gi|304314831|ref|YP_003849978.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588290|gb|ADL58665.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 287
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 105/227 (46%), Gaps = 28/227 (12%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E+ G GT + ++ ++ G+V NK I V L+++Y P+ GD+VIG + ++
Sbjct: 18 ENDYYPGRGTFKEGKKICSSFVGLVSVRNKKINVIPLQSKYIPKRGDVVIGEITDIRFSM 77
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W L+IN +L S + G ++R + ++F D++ V ++
Sbjct: 78 WGLDINSPYSGLLPASEVF---GKEKRE-------LENVFDIGDVLLLRVVDVDEVKKVK 127
Query: 166 LQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEYG-IDLIIGCNGYIWIG--- 217
L + + GK G L+ + P L+ +R + ++E D+++G NG +WI
Sbjct: 128 LGLKGRGLGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGVVWIKGEP 187
Query: 218 --EHVEARDKMVVDQGSNSEQLIAKCDK--------NSMDLDEQDGT 254
E + R +++D+ +++ L + + DLDE DG+
Sbjct: 188 DMERIAERVILMIDREAHTSGLTDRVRELLDRLTGTEPKDLDEDDGS 234
>gi|288560610|ref|YP_003424096.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
ruminantium M1]
gi|288543320|gb|ADC47204.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
ruminantium M1]
Length = 491
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
ED G GT + G++ + + G+V NK I V L+++Y P+ GD+VIG++ +V
Sbjct: 23 EDDYYSGRGTFEDDGKICSKLLGLVSLRNKKISVIPLKSKYIPKKGDVVIGKIDDVRFSM 82
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W ++IN IL S + G +++ + +F D++ + ++
Sbjct: 83 WGVDINSPYSGILPASEVF---GREKKE-------LSRVFDIGDVLFLRIVDVDEVKKVK 132
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
L + + GK G ++ + P V R +K ++ ++ G +++G NG +W+
Sbjct: 133 LGLKGRGMGKFRGGVIVDIAPTKVPRLIGKKGSMINMIKDKTGCKIVVGQNGLVWV 188
>gi|424819351|ref|ZP_18244460.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|326422443|gb|EGD71842.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 224
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 53 HGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINF 112
+GT ++ ++ + G+V+ ++ I V L Y P+ GD ++G V E+ K W ++I+
Sbjct: 24 NGTYEENEKVYSKFLGMVQLSDRGISVSPLAGNYYPKEGDDIVGEVTEISSKYWVVDISA 83
Query: 113 TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQK 172
L + +N V+E + DLV A V + + + R +
Sbjct: 84 PFYTRLDIRDVNF---------RVEESELSRYINIGDLVYARVFRVYPNNAADISMRGTR 134
Query: 173 YGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
YGKLE + +DP + R ++ +L EE DL++G NG +W+
Sbjct: 135 YGKLESKMITRIDPVKLPRLIGKEGAMINLIKEETKCDLVVGQNGIVWV 183
>gi|14591334|ref|NP_143412.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus horikoshii
OT3]
gi|29336583|sp|O59221.1|ECR1_PYRHO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|3257980|dbj|BAA30663.1| 265aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 265
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + I RT ++R F D++ +V++ ++ L +
Sbjct: 86 APYLANLKIQDFT-DEKIDLLRT-----DLRKFFDIGDIIYGKVKAITEVNNIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L+ GQ++ + P ++ R + +++ + +I+G NG+IW+ EA +
Sbjct: 140 PFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIWVNGKNEALE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K D+ S
Sbjct: 200 KLAIEA-------ILKIDRES 213
>gi|254169371|ref|ZP_04876200.1| KH domain protein [Aciduliprofundum boonei T469]
gi|197621690|gb|EDY34276.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 203
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+G + G+L + G+V+ + V L Y P+ GD VIG++I++ P W ++IN
Sbjct: 24 GNGVFVENGKLYSAYLGIVDIRAGYVNVIPLSGCYVPKKGDKVIGKIIDLAPMNWVVDIN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L ++ + VD + + D++ A+V + G + + + Q
Sbjct: 84 APYYAPLHVNDVPW---------RVDFGDTGRYLSIGDVILAKVSNVNELGQVWITMKEQ 134
Query: 172 KYGKLERGQLLTVDPYLVKR----RKQHFHHLEEY-GIDLIIGCNGYIWI 216
KLE G ++ + P+ V R L++Y G + +G NG IWI
Sbjct: 135 GLRKLEGGHIIKISPFKVPRVIGKGGSMIQMLKDYTGCRIYVGQNGVIWI 184
>gi|424819694|ref|ZP_18244761.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422490|gb|EGD71887.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 224
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT +++ ++ + G+ + K I V L Y P GD +IG V E+ K W ++IN
Sbjct: 23 GNGTYEEENKVYSKFLGMAQVSEKRIDVTPLTGNYYPSEGDDIIGEVTEIASKYWVVDIN 82
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
L + +N R + EL+ R I DL+ A V + + + R
Sbjct: 83 APFYTRLDVRDVNF-------RAELGELD-RYIEI-GDLIYARVFRIYPNNAADISMRGT 133
Query: 172 KYGKLERGQLLTVDPY----LVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
+YGKLE + +DP L+ + + + ++ D+++G NG IWI
Sbjct: 134 RYGKLEPKLTMKIDPVKLPRLIGKEGSMINMIKDQTKCDILVGQNGIIWI 183
>gi|290559126|gb|EFD92490.1| KH type 1 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 217
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT +++ ++ + G+ + K I V L Y P GD +IG V E+ K W ++IN
Sbjct: 23 GNGTYEEENKVYSKFLGMAQVSEKRIDVTPLTGNYYPSEGDDIIGEVTEIASKYWVVDIN 82
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
L + +N R + EL+ R I DL+ A V + + + R
Sbjct: 83 APFYTRLDVRDVNF-------RAELGELD-RYIEI-GDLIYARVFRIYPNNAADISMRGT 133
Query: 172 KYGKLERGQLLTVDPY----LVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
+YGKLE + +DP L+ + + + ++ D+++G NG IWI
Sbjct: 134 RYGKLEPKLTMKIDPVKLPRLIGKEGSMINMIKDQTKCDILVGQNGIIWI 183
>gi|432328764|ref|YP_007246908.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Aciduliprofundum sp. MAR08-339]
gi|432135473|gb|AGB04742.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Aciduliprofundum sp. MAR08-339]
Length = 230
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+G + G++ + G+V+ + V L Y P+ GD VIG++I++ P W ++IN
Sbjct: 24 GNGVFVENGKMYSAYLGIVDLRAGYVNVIPLSGCYIPKKGDKVIGKIIDLAPMNWVVDIN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L ++ + VD + + D+V A+V + G + + +
Sbjct: 84 APYYAPLHVNDVPW---------RVDFGDTGRYLSIGDVVLAKVSNVNELGQVWITLKEP 134
Query: 172 KYGKLERGQLLTVDPYLVKR----RKQHFHHLEEY-GIDLIIGCNGYIWI 216
KLE G ++ + P+ V R L+EY G + +G NG IWI
Sbjct: 135 GLRKLEGGHIIKISPFKVPRVIGKGGSMIQMLKEYTGCRIYVGQNGVIWI 184
>gi|159040950|ref|YP_001540202.1| exosome complex RNA-binding protein Rrp4 [Caldivirga maquilingensis
IC-167]
gi|157919785|gb|ABW01212.1| KH type 1 domain protein [Caldivirga maquilingensis IC-167]
Length = 240
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAV 136
+ V L YKP GDIVIG VI+++ W+++I A L ++ L + V
Sbjct: 55 VQVIPLNGAYKPRQGDIVIGYVIDILVNGWEIDIKSPYSAYLPINEATL------KPVDV 108
Query: 137 DELNMRSIFTENDLVCAEVRSSQ--GDGSLQLQARNQKYGKLERGQLLTVDPYLVKR--- 191
++R+I D+V A++ D + L + + G++E G ++ +DP V R
Sbjct: 109 VTADLRNILNIGDIVLAKISDFNLAKDYPVTLTIKESRLGRIEDGTVIEIDPVKVPRVIG 168
Query: 192 -RKQHFHHL-EEYGIDLIIGCNGYIWIGEHVEARDKMVVDQ 230
R + +E D+ +G NG IW+ RD++ V Q
Sbjct: 169 KRGSMVNMFKDELNCDVTVGQNGRIWV-RCRNKRDELFVSQ 208
>gi|282165298|ref|YP_003357683.1| putative exosome complex RNA-binding protein [Methanocella
paludicola SANAE]
gi|282157612|dbj|BAI62700.1| putative exosome complex RNA-binding protein [Methanocella
paludicola SANAE]
Length = 226
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
ED L G GT Q G + + G+V+R I V L RY P GD+VIG+++++
Sbjct: 16 EDPKLAGIGTYVQDGRVYSANYGLVDRRTN-IKVIPLSGRYIPARGDLVIGKIVDMTFSN 74
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W +IN + +L +S P+ VD NM +L+ A V ++
Sbjct: 75 WFADINSPYEGMLHISE--FPE-------RVDPANMGKYLHIGELIIARVEDVDPTMKVE 125
Query: 166 LQARNQKYGKLERGQLLTVD----PYLVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
L R++ L++G+++ + P ++ R L ++ + + +G NG IW+
Sbjct: 126 LTMRDEHLRILKQGRVIDISHVKIPRVIGRNGSMISMLKKDLNVSIFVGQNGRIWM 181
>gi|269986357|gb|EEZ92655.1| KH type 1 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 224
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 53 HGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINF 112
+GT ++ ++ + G+V+ ++ I V L Y P+ GD ++G V E+ K W ++I+
Sbjct: 24 NGTYEENEKVYSKFLGMVQLSDRGISVSPLAGNYYPKEGDDIVGEVTEISSKYWVVDISA 83
Query: 113 TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQK 172
L + +N V+E + DLV A V + + + R +
Sbjct: 84 PFYTRLDIRDVNF---------RVEESELSRYINIGDLVYARVFRVYPNNAADISMRGTR 134
Query: 173 YGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
YGKL+ + +DP + R ++ +L EE DL++G NG +W+
Sbjct: 135 YGKLDSKMITRIDPVKLPRLIGKEGAMINLIKEETKCDLVVGQNGIVWV 183
>gi|424811891|ref|ZP_18237131.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756113|gb|EGQ39696.1| RNA-binding protein Rrp4-related protein [Candidatus Nanosalinarum
sp. J07AB56]
Length = 227
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 16/209 (7%)
Query: 26 LSSKSNPNSCVTVGDTIPVYE-DGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA 84
++ K + V GDT V+E D G+G + +L + G+V + VR
Sbjct: 1 MTQKFDNRQKVAPGDT--VFEGDTAEAGNGVYEDGEKLRSRYAGIVRYQEGTVSVRPSNG 58
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY P+ GDIVIG V V W +++N + ++ + DG +DE +
Sbjct: 59 RYIPQEGDIVIGEVKAVRYSSWMVDLNSPYEGMMKV------DGAVDEYIDLDEDELTEY 112
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDP----YLVKRRKQHFHHL- 199
+ D + +V S + L +++ LE G++ + P L+ + L
Sbjct: 113 YDVGDAIVVKVSSVSEGFDVNLTMDDRRCRTLESGRIEEISPSKVSALIGKGGNIIRELK 172
Query: 200 EEYGIDLIIGCNGYIWI--GEHVEARDKM 226
EE +I G NG +WI GEHV+A + +
Sbjct: 173 EETDTSMIAGQNGRVWIQGGEHVKAAEAL 201
>gi|327310390|ref|YP_004337287.1| exosome complex RNA-binding protein Rrp4 [Thermoproteus uzoniensis
768-20]
gi|326946869|gb|AEA11975.1| exosome complex RNA-binding protein Rrp4 [Thermoproteus uzoniensis
768-20]
Length = 236
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
+P + GD + ++ + D G+ A+ G+VE + I V L Y+P+
Sbjct: 5 SPRQVIFPGDLVATSDESVEGAVYIDD--GKYRASSVGLVEFRDNKIVVVPLEGSYRPKP 62
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+VIG V +V+ W++++ A L +S + +++ ++ S+ D
Sbjct: 63 GDVVIGYVTDVLASGWEVDVRAPLAAWLPVSEAT------AKYIDLEKTSLTSLLNIGDA 116
Query: 151 VCAEVRSSQ--GDGSLQLQAR-NQKYGKLERGQLLTVDPYLVKR----RKQHFHHLEEYG 203
V A V+ + + L R ++ GK+E G ++ + P V R + + E G
Sbjct: 117 VIAVVKDVDLTDEFPVMLTLREGERLGKIESGFVVELSPVKVPRVIGKKGSMISTISELG 176
Query: 204 IDLIIGCNGYIW 215
D+I+G NG +W
Sbjct: 177 CDIIVGQNGRLW 188
>gi|119719495|ref|YP_919990.1| exosome complex RNA-binding protein Rrp4 [Thermofilum pendens Hrk
5]
gi|380876882|sp|A1RXQ7.1|ECR1_THEPD RecName: Full=Probable exosome complex RNA-binding protein 1
gi|119524615|gb|ABL77987.1| ribosomal RNA-processing protein RRP4 [Thermofilum pendens Hrk 5]
Length = 237
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
N+++ V L+ +Y P G IV+G+V+++ W+++IN A+L +S + R
Sbjct: 55 NRVVKVIPLKGKYFPVEGHIVVGKVVDIGFTSWEVDINSPYVAVLPVSE------VTSRP 108
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LV 189
+ + I DL+ A++ S L + + GK+ RG L+ + P ++
Sbjct: 109 VTISRNELSRILDVGDLILAKIVSFDLSKDPVLTIKESRLGKIPRGTLVEIPPQKVPRVI 168
Query: 190 KRRKQHFHHLEE-YGIDLIIGCNGYIWI 216
RR +E+ G+ LI+G NG I +
Sbjct: 169 GRRGSMVSMIEDLLGVKLIVGQNGRIVV 196
>gi|352682027|ref|YP_004892551.1| exosome complex RNA-binding protein [Thermoproteus tenax Kra 1]
gi|350274826|emb|CCC81472.1| exosome complex RNA-binding protein [Thermoproteus tenax Kra 1]
Length = 236
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 19/193 (9%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVE-RINKLIYVRALRARYKPET 90
P + GD + ED ++G D G+ A+ G+VE R NK++ V L Y+P+
Sbjct: 6 PRQIIFPGDLV-ASEDENVEGAVYLDN-GKYRASSVGLVEFRENKIVIV-PLEGVYRPKQ 62
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GDIVIG + +V+ W+++I A L L+ + ++ + + S+ D+
Sbjct: 63 GDIVIGYITDVLASGWEVDIRAPFPAWLPLNEA------VTKYIDLERIALTSLLNIGDV 116
Query: 151 VCAEVR----SSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR----RKQHFHHLEEY 202
V A+V+ + + +L L+ ++ GK+E G + + P V R + + E
Sbjct: 117 VIAQVKDIDLTDEYPVTLTLR-EGERLGKIESGFIAEISPVKVPRVIGKKGSMLATISEL 175
Query: 203 GIDLIIGCNGYIW 215
G +L IG NG IW
Sbjct: 176 GCELTIGQNGRIW 188
>gi|18977941|ref|NP_579298.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus DSM
3638]
gi|397652062|ref|YP_006492643.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus COM1]
gi|29336821|sp|Q8U0L8.1|ECR1_PYRFU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|18893711|gb|AAL81693.1| hypothetical protein PF1569 [Pyrococcus furiosus DSM 3638]
gi|393189653|gb|AFN04351.1| exosome complex RNA-binding protein Rrp4 [Pyrococcus furiosus COM1]
Length = 264
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ I V L Y PE GD V+G++++V W ++I
Sbjct: 26 GRGTFKEGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + I RT ++R F D++ A+V+ +++L +
Sbjct: 86 SPYSATLKIQDYT-DEKIDLLRT-----DLRKFFDIGDIIYAKVKGINEVNNIELTTKGM 139
Query: 172 KY--GKLERGQLLTVD----PYLVKRRKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L GQ++ + P ++ + + +++ +I+G NG+IWI +
Sbjct: 140 PFNGGPLRGGQIIKITSSKVPRVIGKGGSMINMIKKLTQSRIIVGQNGWIWISSKNPELE 199
Query: 225 KMVVD 229
K+ ++
Sbjct: 200 KLAIE 204
>gi|15678711|ref|NP_275827.1| exosome complex RNA-binding protein Rrp4 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336574|sp|O26780.1|ECR1_METTH RecName: Full=Probable exosome complex RNA-binding protein 1
gi|2621769|gb|AAB85189.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 311
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E+ G GT + + ++ G+V NK I V L+++Y P+ GD+VIG + ++
Sbjct: 18 ENEYFPGRGTFKEDNRICSSFVGLVSVRNKKINVIPLQSKYIPKRGDVVIGEITDIRFSM 77
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W L+IN +L S + D+ + S+F D++ V ++
Sbjct: 78 WGLDINSPYTGLLPASEV----------FGKDKRELESVFDIVDVLLLRVVDVDEVKKVK 127
Query: 166 LQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEYG-IDLIIGCNGYIWI 216
L + + GK G L+ + P L+ +R + ++E D+++G NG +WI
Sbjct: 128 LGLKGRGLGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGVVWI 183
>gi|91772266|ref|YP_564958.1| exosome complex RNA-binding protein Rrp4 [Methanococcoides burtonii
DSM 6242]
gi|121684520|sp|Q12ZB8.1|ECR1_METBU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|91711281|gb|ABE51208.1| Archaeal exosome complex RNA-binding protein 4 [Methanococcoides
burtonii DSM 6242]
Length = 263
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
+ G GT + G + + + G+ + V +Y P D +I VI+V P W +E
Sbjct: 18 MAGPGTYVKNGNIYSLLYGIA-NFKGRVSVVPFSGKYIPSRKDFIIVNVIDVTPSNWIME 76
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
D +L +S +R VD MR D V V+ ++L R
Sbjct: 77 TGSPYDGLLHVSEF------PKR---VDSSEMRKFMDVGDCVIVRVKDVSKAMKVELSMR 127
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
Q L +G+++ V P V R H + +E D+ +G NG IWI
Sbjct: 128 EQGSRALSKGRIIEVVPSKVPRVIGHGGSMVSILKKESNCDVFVGKNGRIWI 179
>gi|18313179|ref|NP_559846.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum aerophilum
str. IM2]
gi|29336867|sp|Q8ZVM8.1|ECR1_PYRAE RecName: Full=Probable exosome complex RNA-binding protein 1
gi|18160693|gb|AAL64028.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 235
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 82/202 (40%), Gaps = 34/202 (16%)
Query: 31 NPNSCVTVGDTI---------PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRA 81
P V GD I PVY D G+ + V G+VE ++ V
Sbjct: 5 TPRQLVFPGDVIATADSKVEGPVYLD-----------NGKYRSLVVGLVEFREDVVVVVP 53
Query: 82 LRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNM 141
L YKP+ GD+VIG V +V+ W++++ A LP G R E
Sbjct: 54 LEGTYKPKKGDLVIGYVTDVLATGWEVDVRSFMPA-------YLPVGEALHRHVDLETTP 106
Query: 142 RSIFTENDLVCAEVRSS---QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR----RKQ 194
+ F V + + L +++K GK+E G ++ + P V R R
Sbjct: 107 LTTFLNIGDVVVAKVKDVDLTDEYPIILTLKDEKVGKVESGTVVEITPVKVPRVIGKRGS 166
Query: 195 HFHHLEEYGIDLIIGCNGYIWI 216
+ L E G D+++G NG IW+
Sbjct: 167 MLNTLMELGCDIVVGQNGRIWV 188
>gi|167389161|ref|XP_001733446.1| rrp4 [Entamoeba dispar SAW760]
gi|165897731|gb|EDR24809.1| rrp4, putative [Entamoeba dispar SAW760]
Length = 116
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
N N+ VT GD I YE+G + G+G + E + V G VERINKL+ V +R+RY
Sbjct: 7 NDNNHVTPGDEI-FYEEGCIPGNGIRIEDNEFISCVHGTVERINKLVCVNPIRSRYCGNV 65
Query: 91 GDIVIGRVIEVVPKRW 106
G +V+GR++ V W
Sbjct: 66 GYVVVGRIVSVGVGFW 81
>gi|410671926|ref|YP_006924297.1| exosome complex RNA-binding protein Rrp4 [Methanolobus
psychrophilus R15]
gi|409171054|gb|AFV24929.1| exosome complex RNA-binding protein Rrp4 [Methanolobus
psychrophilus R15]
Length = 267
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 15/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + G++ + + GV N+ I V +Y P + D VIG VI+V P W I
Sbjct: 20 GSGTYVRDGKVYSLLYGVRNAKNR-ISVIPFSGKYIPTSKDFVIGTVIDVTPSNWIFNIG 78
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
D +L S RR VD M +I D V+ ++L R +
Sbjct: 79 SPYDGLLHASEY------PRR---VDSSQMAAIMDVGDSALLRVQDVSPAMKVELSMRER 129
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
L+ G+L+ V P V R H + +E ++ +G NG +WI
Sbjct: 130 GLRPLKIGRLIEVVPAKVPRVIGHGGSMVSMLKKETNCEIFVGQNGRVWI 179
>gi|148642303|ref|YP_001272816.1| exosome complex RNA-binding protein Rrp4 [Methanobrevibacter
smithii ATCC 35061]
gi|166919579|sp|A5UJS0.1|ECR1_METS3 RecName: Full=Probable exosome complex RNA-binding protein 1
gi|148551320|gb|ABQ86448.1| RNA-binding protein Rrp4 [Methanobrevibacter smithii ATCC 35061]
Length = 298
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
+D G GT + G++ +++ G+V NK I V L+++Y P+ GD+VIG++ +V
Sbjct: 18 DDEYYSGRGTFKENGKICSSLMGLVSLRNKKIRVIPLKSKYVPKKGDVVIGKIKDVRFSM 77
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W ++IN IL + R + ELN +F D++ V ++
Sbjct: 78 WDVDINSPYSGILPAFEV-----FGREKK---ELN--KVFDVGDVLFLRVVDVDEVKKVK 127
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
L + + GK G ++ + P V R +K ++ ++ +I+G NG +W+
Sbjct: 128 LGLKGRGMGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQNGLVWV 183
>gi|156937006|ref|YP_001434802.1| exosome complex RNA-binding protein Rrp4 [Ignicoccus hospitalis
KIN4/I]
gi|156565990|gb|ABU81395.1| ribosomal RNA-processing protein RRP4 [Ignicoccus hospitalis
KIN4/I]
Length = 239
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
A V G+ E N + + Y P+ GD+VIG V V W+++IN IL +S++
Sbjct: 43 AAVAGMAEITNGTVSLIPFEGTYIPKPGDLVIGVVENFVVTHWQVDINSPYIGILHVSNL 102
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
+ R + N++ D + A+V S L + + G++ G+++
Sbjct: 103 -----LGRPYNPAKD-NLKEYLDIGDYIIAKVESFDRTKDPILNVQGKGLGRVVEGKIVE 156
Query: 184 VDPYLVKR----RKQHFHHLE-EYGIDLIIGCNGYIWI 216
+ P V R +K + ++ + G ++I+G NG IWI
Sbjct: 157 IKPSRVPRVIGKKKSMLNVIKGDTGCEIIVGANGRIWI 194
>gi|222444526|ref|ZP_03607041.1| hypothetical protein METSMIALI_00138 [Methanobrevibacter smithii
DSM 2375]
gi|261350935|ref|ZP_05976352.1| putative exosome complex RNA-binding protein 1 [Methanobrevibacter
smithii DSM 2374]
gi|222434091|gb|EEE41256.1| KH domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860273|gb|EFC92571.1| putative exosome complex RNA-binding protein 1 [Methanobrevibacter
smithii DSM 2374]
Length = 298
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
+D G GT + G++ +++ G+V NK I V L+++Y P+ GD+VIG++ +V
Sbjct: 18 DDEYYSGRGTFKENGKICSSLMGLVSLRNKKIRVIPLKSKYVPKKGDVVIGKIKDVRFSM 77
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W ++IN IL + R + ELN +F D++ V ++
Sbjct: 78 WDVDINSPYSGILPAFEV-----FGREKK---ELN--KVFDVGDVLFLRVVDVDEVKKVK 127
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
L + + GK G ++ + P V R +K ++ ++ +I+G NG +W+
Sbjct: 128 LGLKGRGMGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQNGLVWV 183
>gi|84490038|ref|YP_448270.1| exosome complex RNA-binding protein Rrp4 [Methanosphaera stadtmanae
DSM 3091]
gi|121725485|sp|Q2NEX6.1|ECR1_METST RecName: Full=Probable exosome complex RNA-binding protein 1
gi|84373357|gb|ABC57627.1| putative exosome complex, RNA-binding subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 222
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 25/175 (14%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + G++ +++ G+V ++ I V L+ Y P GD+VIGRV W ++IN
Sbjct: 24 GRGTYKENGKIYSSITGLVYFESEQIKVIPLKDTYSPNYGDLVIGRVTGSSYSSWSIDIN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
T L + L D +E N+ +I D++ V + ++L R++
Sbjct: 84 STYHG--FLPTTELYDK--------NEPNINNIINIKDMLLLRVANVDEINRVKLTLRSR 133
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHF---------HHLEEYG-IDLIIGCNGYIWI 216
GK +G ++ VK+ HF ++EY D+IIG NG IWI
Sbjct: 134 GLGKFNQGTIIK-----VKQPTIHFLSEENAFLTTMIQEYTYTDVIIGKNGLIWI 183
>gi|305663897|ref|YP_003860185.1| exosome complex RNA-binding protein Rrp4 [Ignisphaera aggregans DSM
17230]
gi|380876877|sp|E0SQX5.1|ECR1_IGNAA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|304378466|gb|ADM28305.1| exosome complex RNA-binding protein Rrp4 [Ignisphaera aggregans DSM
17230]
Length = 253
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 24 ESLSSKSNPNSCVTVGDTIPVYEDGILKG----HGTSDQKGELAATVCGVVERIN----K 75
E++S +++ V GD++ + +D ++ + +T+ +++ N K
Sbjct: 5 EAISLQTSKRILVVPGDSVQISQDVVIDPQQILYLYKKDDNTFISTITALLDFENIDDKK 64
Query: 76 LIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA 135
+ V L+ RY P GDIVIG V++V W ++IN LS +N D + R
Sbjct: 65 KLRVIPLKGRYIPREGDIVIGIVVDVTLSSWIIDINSP-----YLSVLNASDYLGRSFNP 119
Query: 136 VDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---- 191
+ + N+R D+V ++ + L +++ GK+ G L+ ++P V R
Sbjct: 120 LTD-NIRKYLEIGDVVVGKIATFDRSRGPILTVQDKGLGKVVDGSLIEIEPIKVARVIGK 178
Query: 192 RKQHFHHL-EEYGIDLIIGCNGYI 214
+K + L E+ D+++G NG I
Sbjct: 179 KKSMLNMLIEQTKCDILVGNNGRI 202
>gi|83754322|pdb|2BA0|A Chain A, Archaeal Exosome Core
gi|83754323|pdb|2BA0|B Chain B, Archaeal Exosome Core
gi|83754324|pdb|2BA0|C Chain C, Archaeal Exosome Core
Length = 229
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 40/183 (21%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + G++ A + G+ ++ + V L+ RY P GD+VIG + EV W ++I
Sbjct: 19 GYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDIY 78
Query: 112 FTQDAILMLSS-------------MNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSS 158
A L +S +++ D I + +D M+ T D +C +R
Sbjct: 79 SPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRICRPIRF- 136
Query: 159 QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGY 213
G+++ ++P V R +K L E + +++G NG
Sbjct: 137 --------------------GRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGL 176
Query: 214 IWI 216
IW+
Sbjct: 177 IWV 179
>gi|11498103|ref|NP_069328.1| exosome complex RNA-binding protein Rrp4 [Archaeoglobus fulgidus
DSM 4304]
gi|29336577|sp|O29758.1|ECR1_ARCFU RecName: Full=Probable exosome complex RNA-binding protein 1
gi|2650134|gb|AAB90745.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 223
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 40/183 (21%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + G++ A + G+ ++ + V L+ RY P GD+VIG + EV W ++I
Sbjct: 19 GYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDIY 78
Query: 112 FTQDAILMLSS-------------MNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSS 158
A L +S +++ D I + +D M+ T D +C +R
Sbjct: 79 SPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRICRPIRF- 136
Query: 159 QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGY 213
G+++ ++P V R +K L E + +++G NG
Sbjct: 137 --------------------GRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGL 176
Query: 214 IWI 216
IW+
Sbjct: 177 IWV 179
>gi|386002839|ref|YP_005921138.1| Exosome complex RNA-binding protein RRP4 [Methanosaeta harundinacea
6Ac]
gi|357210895|gb|AET65515.1| Exosome complex RNA-binding protein RRP4 [Methanosaeta harundinacea
6Ac]
Length = 232
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 30 SNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
+N + V GD + +D G GT + G++ + + G+ + V L +Y P
Sbjct: 10 NNDRNVVVPGDLLS--DDPKASGEGTYVKDGKVRSLLYGMASSYKDKVRVIPLAGKYVPA 67
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
GD VIG V ++V W + IN + +L +S LP R+ ++E M
Sbjct: 68 PGDTVIGTVQDIVFSNWIVNINSPYEGLLHISE--LP-----RKIEMNE--MSKYLRIGS 118
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGI 204
V V+ ++L +++ G L RG++ + P V R + +E
Sbjct: 119 SVMTRVKDVDSTMKVELTMNDRRLGILTRGRVAEISPTRVPRLIGKGGSMINMLKKELNC 178
Query: 205 DLIIGCNGYIWI 216
+L +G NG IW+
Sbjct: 179 NLFVGQNGRIWV 190
>gi|254566955|ref|XP_002490588.1| exosome complex component RRP40 [Komagataella pastoris GS115]
gi|238030384|emb|CAY68307.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350975|emb|CCA37375.1| exosome complex component RRP40 [Komagataella pastoris CBS 7435]
Length = 232
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 34/204 (16%)
Query: 34 SCVTVGDTIPVYEDGILKGHG--TSDQKGELAATVCGVVE---RINKLIYVRALRAR-YK 87
S + GD + + + I+ G G + E+ T G++E + NK +YV +++ Y
Sbjct: 4 SLIVPGDRLDIKSENIILGPGFYVDPKTDEILPTNAGILEVSQKQNKTVYVIDSKSKTYI 63
Query: 88 PETGDIVIGRVIEVVPKRWKLEIN-FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFT 146
P+T D VIG + + +K+ ++ FTQ A +S P+ ++ R +
Sbjct: 64 PKTNDFVIGIITGTFGELYKVGLSEFTQAA--QMSVYAFPNASKKNRPHLKV-------- 113
Query: 147 ENDLVCAEVRSSQGDGSLQLQ------ARNQKYGKLERGQLLTVDPYLVKRRKQHFHH-- 198
D++ A V S++ D ++L+ + +G+LE G L TV+ L R F+
Sbjct: 114 -GDVIYARVLSAERDIEVELECIDPTTGKEGGFGQLEDGYLFTVN--LAYARYLLFNENA 170
Query: 199 ------LEEYGIDLIIGCNGYIWI 216
+++ +L +GCNG IWI
Sbjct: 171 EILTELVKKCKFELAVGCNGRIWI 194
>gi|307594972|ref|YP_003901289.1| K-like, type 1, subgroup [Vulcanisaeta distributa DSM 14429]
gi|307550173|gb|ADN50238.1| K-like, type 1, subgroup [Vulcanisaeta distributa DSM 14429]
Length = 245
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 54 GTSDQKGELA-ATVCGVVE-RINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+ G++A + V G++ R + + V L YKP GDIVIG VI++ W ++I
Sbjct: 26 GSIYWDGDVAYSAVVGLINIRGERDVEVIPLSGIYKPRVGDIVIGYVIDIGLTGWVIDIK 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV--RSSQGDGSLQLQAR 169
A L + L + + ++++S+ D+V A + + D + L +
Sbjct: 86 SPYSAYLPIQEATL------KPVDLMTVDLKSLLGIGDIVLARIIDFNLTKDYPVTLTLK 139
Query: 170 NQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
+ G++E G L+ +D V R R+ + EE G D+ +G NG +WI
Sbjct: 140 EARLGRIEGGTLVEIDASKVARVIGRRGSMVSIFSEELGCDVTVGQNGRVWI 191
>gi|257076443|ref|ZP_05570804.1| exosome complex RNA-binding protein Rrp4 [Ferroplasma acidarmanus
fer1]
Length = 222
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 16/198 (8%)
Query: 35 CVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIV 94
V GD I + E + +G + E + GV++ K I V + Y P D +
Sbjct: 6 IVYPGDKIEIAE--LKPRNGMYEYNSEFFSEYFGVIQESEKFIDVAPFNSPYLPRANDKI 63
Query: 95 IGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAE 154
IG+++++ P W ++IN ++L ++ V ++ D + A
Sbjct: 64 IGKIMDIGPTMWTVDINSPYYSLLHMNDTPW---------HVSSGDLERYLNVGDYIYAR 114
Query: 155 VRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEY-GIDLIIG 209
+ S + R+ KLE G++++V P ++ R + ++ Y +I+G
Sbjct: 115 ISVSNEIKESWISLRDNGMRKLESGRIISVKPPKVPRVIGRGGNMINIIKNYTDTKIIVG 174
Query: 210 CNGYIWIGEHVEARDKMV 227
NG+IW+ +V+ K +
Sbjct: 175 QNGFIWLDGNVDNVKKAI 192
>gi|21228724|ref|NP_634646.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina mazei Go1]
gi|29336796|sp|Q8PTT9.1|ECR1_METMA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|20907233|gb|AAM32318.1| hypothetical protein MM_2622 [Methanosarcina mazei Go1]
Length = 260
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + ++ +++CG+ + V L Y P D+VIG VI V P W L+I
Sbjct: 20 GYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSVNDVVIGVVIVVTPSNWILDIA 79
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
D +L +S RR V+ M I D V VR ++L R+
Sbjct: 80 APYDGLLHVSEY------PRR---VESREMPEILDVGDSVILRVRDVDSSMKIELALRDP 130
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
KL GQ++ V+P V R H + +E + +G NG IWI
Sbjct: 131 NLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI 180
>gi|452211129|ref|YP_007491243.1| Exosome complex RNA-binding protein 1 [Methanosarcina mazei Tuc01]
gi|452101031|gb|AGF97971.1| Exosome complex RNA-binding protein 1 [Methanosarcina mazei Tuc01]
Length = 247
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + ++ +++CG+ + V L Y P D+VIG VI V P W L+I
Sbjct: 20 GYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSMNDVVIGVVIVVTPSNWILDIA 79
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
D +L +S RR V+ M I D V VR ++L R+
Sbjct: 80 APYDGLLHVSEY------PRR---VESREMPEILDVGDSVILRVRDVDSSMKIELALRDP 130
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
KL GQ++ V+P V R H + +E + +G NG IWI
Sbjct: 131 NLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI 180
>gi|20093820|ref|NP_613667.1| exosome complex RNA-binding protein Rrp4 [Methanopyrus kandleri
AV19]
gi|29336818|sp|Q8TYC0.1|ECR1_METKA RecName: Full=Probable exosome complex RNA-binding protein 1
gi|19886743|gb|AAM01597.1| Predicted exosome subunit, RNA-binding protein Rrp4 (contain S1
domain and KH domain) [Methanopyrus kandleri AV19]
Length = 239
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++ GT E+ + V G+V+ + I V L Y+P GD V+G V EV W +
Sbjct: 25 VIASEGTYTSGDEVYSKVTGLVDIDGRRIRVIPLAGPYRPSPGDFVVGIVEEVKFSSWLI 84
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
++ AIL +S+ + E ++ + D++ A VR ++L
Sbjct: 85 DVRAPLPAILHVSNA------LEEEVDLIETDLSRYYRPGDVITAVVREVDPVQRVELSL 138
Query: 169 ----RNQKYGKLERGQLLTVDPYLVKR---RKQHFHHLEE--YGIDLIIGCNGYIWI 216
+ G+L+ GQ++ +DP V R RK + + G D+++G NG I++
Sbjct: 139 LEDDAPTRLGRLQGGQVVEIDPVKVPRVIGRKGSMIKMLKRVLGCDIVVGANGRIYV 195
>gi|333986694|ref|YP_004519301.1| exosome complex RNA-binding protein 1 [Methanobacterium sp. SWAN-1]
gi|333824838|gb|AEG17500.1| exosome complex RNA-binding protein 1 [Methanobacterium sp. SWAN-1]
Length = 275
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 20/196 (10%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +++ G+V +K I V L+++Y P+ GD+VIG V ++ W L++N
Sbjct: 24 GRGTFRENSNICSSLVGLVAIRDKKISVIPLQSKYIPKRGDVVIGEVTDIRFSMWNLDVN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
L S + G ++R + F D++ V ++L + +
Sbjct: 84 SPYSGFLPASDVF---GKEKR-------ELSRTFDVGDVLFLRVVDVDEVKKVKLGLKGR 133
Query: 172 KYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWIG-----EHVE 221
GK G L+ + P V R +K ++ +E D+++G NG +W+ E V
Sbjct: 134 GLGKFRGGILINITPTKVPRLIGKKGSMINMIKDETRCDVVVGQNGVVWVKGELEMERVA 193
Query: 222 ARDKMVVDQGSNSEQL 237
+ M++++ S++ L
Sbjct: 194 EKVIMMIEEQSHTSGL 209
>gi|410721459|ref|ZP_11360794.1| RNA-binding protein Rrp4 [Methanobacterium sp. Maddingley MBC34]
gi|410598916|gb|EKQ53479.1| RNA-binding protein Rrp4 [Methanobacterium sp. Maddingley MBC34]
Length = 248
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT ++ ++ +++ G+V +K I V L+++Y P+ GD+VIG+V ++ W L+IN
Sbjct: 24 GRGTFTEEDKVCSSLVGLVAVRDKKISVIPLQSKYIPKRGDVVIGKVSDIRFSMWNLDIN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
IL + + G ++R ++ F D++ V ++L + +
Sbjct: 84 SPYSGILPAAEVF---GKEKR-------DLNRAFNVGDVLFLRVVDVDEVKKVKLGLKGR 133
Query: 172 KYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
GK G L+ + P V R +K ++ ++ ++++G NG +W+
Sbjct: 134 GLGKFRGGILINITPTKVPRLIGKKGSMINMIKDQTRCEVVVGQNGVVWV 183
>gi|408382266|ref|ZP_11179811.1| exosome complex RNA-binding protein Rrp4 [Methanobacterium
formicicum DSM 3637]
gi|407814922|gb|EKF85544.1| exosome complex RNA-binding protein Rrp4 [Methanobacterium
formicicum DSM 3637]
Length = 247
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT ++ ++ +++ G+V +K I V L+++Y P+ GD+VIG+V ++ W L+IN
Sbjct: 24 GRGTFKEEDKVCSSLVGLVAVRDKKISVIPLQSKYIPKRGDVVIGKVSDIRFSMWNLDIN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
IL + + G ++R ++ F D++ V ++L + +
Sbjct: 84 SPYSGILPAAEVF---GKEKR-------DLNRAFNVGDVLFLRVVDVDEVKKVKLGLKGR 133
Query: 172 KYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
GK G L+ + P V R +K ++ ++ ++++G NG +W+
Sbjct: 134 GLGKFRGGILINITPTKVPRLIGKKGSMINMIKDQTRCEVVVGQNGVVWV 183
>gi|294495470|ref|YP_003541963.1| ribosomal RNA-processing protein RRP4 [Methanohalophilus mahii DSM
5219]
gi|292666469|gb|ADE36318.1| ribosomal RNA-processing protein RRP4 [Methanohalophilus mahii DSM
5219]
Length = 255
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 15/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT Q G++ + GV N++ V +Y P D VIG VIEV W +I
Sbjct: 20 GIGTYVQDGKVYSLFYGVANDKNRVTVV-PFSGKYIPSPKDYVIGYVIEVTSSNWIFDIG 78
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
D +L +S +R VD MR D ++ ++L +++
Sbjct: 79 SPYDGLLHVSEY------PKR---VDSSMMRKEIDIWDCAILRIKDVNTSMKVELSMKDR 129
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
+L+ G+++ V V R H + +E D+ IG NG IW+
Sbjct: 130 GLRRLDEGRIIDVSTTKVPRIIGHNGSMVSMLKKESNCDIFIGQNGRIWL 179
>gi|171185835|ref|YP_001794754.1| exosome complex RNA-binding protein Rrp4 [Pyrobaculum neutrophilum
V24Sta]
gi|170935047|gb|ACB40308.1| RNA binding S1 domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 238
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPET 90
P + GD + D ++G D G + V G+VE + ++ + L Y+P+
Sbjct: 5 TPRQLIFPGDVVAT-ADSKVEGPVFLDN-GRYRSLVVGLVEFRDDVVVIVPLEGTYRPKK 62
Query: 91 GDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDL 150
GD+V+G V +V+ W+++I A L +S R ++ + + D+
Sbjct: 63 GDLVVGYVTDVLATGWEVDIRSFMPAYLPVSEA------LHRHVDLETTPLTTFLNIGDV 116
Query: 151 VCAEVRSS--QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR----RKQHFHHLEEYGI 204
V A+V+ + + L + ++ GK+ERG ++ + P V R + + L E
Sbjct: 117 VVAKVKDVDLTDEYPVILTLKEERVGKVERGTVVEISPVKVPRVIGKKGSMLNTLMELSC 176
Query: 205 DLIIGCNGYIW 215
D+++G NG IW
Sbjct: 177 DIVVGQNGRIW 187
>gi|118576720|ref|YP_876463.1| exosome complex RNA-binding protein [Cenarchaeum symbiosum A]
gi|118195241|gb|ABK78159.1| exosome complex RNA-binding protein [Cenarchaeum symbiosum A]
Length = 225
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 19/190 (10%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P +T G P ++ IL+G + ATV GV E + + V L Y P+ G
Sbjct: 9 PGDVITTGPYRP-EQNTILEGR-------NIVATVVGVSEIADDAVSVIPLTGMYYPKVG 60
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D+VIG+V W++EIN L S + G + DEL+ S + +LV
Sbjct: 61 DLVIGKVTSHSSLAWEVEINSCYVGFLPASDV-FGRGFDAQG---DELS--SKLAKGELV 114
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEY-GIDL 206
A V + + + GK++ G L+T+ P L+ +R +E+ G +
Sbjct: 115 AARVANFDRTRDPLVTVAERDLGKIDTGDLVTISPSKVARLIGKRGAMIETIEKATGATV 174
Query: 207 IIGCNGYIWI 216
IG NG + +
Sbjct: 175 TIGQNGRVVV 184
>gi|170290984|ref|YP_001737800.1| exosome complex RNA-binding protein Rrp4 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|380876878|sp|B1L6N8.1|ECR1_KORCO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|170175064|gb|ACB08117.1| KH type 1 domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 228
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 16/165 (9%)
Query: 57 DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDA 116
D+ G + + G+V + I + L Y P+ D+VIG V ++ ++I
Sbjct: 34 DESGTIRSKKLGLVSLKDDEISIVPLVGAYIPKEDDLVIGIVSKISGNTILVDIRSPYQG 93
Query: 117 ILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKL 176
L IQRR VD + D++ A+VRS G SL L + GKL
Sbjct: 94 AL---------PIQRRAERVD--LKKYDLKIGDVILAKVRSFDGASSLILTIDAEGLGKL 142
Query: 177 ERGQLLTVDPYLVKR----RKQHFHHLEEYG-IDLIIGCNGYIWI 216
E G LL VDP V R R+ L+E ++I+ NG IW+
Sbjct: 143 EGGYLLEVDPAKVPRVIGKRQSMLSMLKEATRSEIIVANNGRIWV 187
>gi|402469900|gb|EJW04455.1| hypothetical protein EDEG_01325 [Edhazardia aedis USNM 41457]
Length = 365
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 108/291 (37%), Gaps = 93/291 (31%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKG------HGTSDQKGELAATV 66
++R K L+ + S+S C+ +T Y G ++G TS+Q + +++
Sbjct: 46 EIRKNKGLDETKPAESRST--DCLNKKNTDLQYNPGCIEGLNGFYNPDTSEQI--IVSSI 101
Query: 67 CGVVERINKLIYVRAL-RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNL 125
G KL+ + + +Y P GD +IGRV + KRW L IN + IL+L +++
Sbjct: 102 YGTPNLTQKLLTMHCIYNLKYIPHIGDTIIGRVTSLGDKRWFLSINCAKHGILLLDAVDT 161
Query: 126 PD------------------------------------------------GIQRRRTAVD 137
D + RR+ D
Sbjct: 162 YDLNQNHLNKTNVIRNSVSLHHKGVHKDMQNIKNHKSLQNTIEHGPSKMIHVARRKLHED 221
Query: 138 ELNMRSIFTENDLVCAEV----------------------------RSSQGDGSLQLQAR 169
+ MR I+ NDLV EV S QG+ ++ + +
Sbjct: 222 AMEMRKIYDINDLVVCEVSKITGAISVHTRSIITGSSSQFYSGIGTNSYQGNSAMNVLSN 281
Query: 170 NQKY----GKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI 216
+ KL G +L V P L++++K L+ + +I+ NG +W+
Sbjct: 282 TSGFISPNRKLLGGVVLLVPPSLIEKKKSQIVLLKN--VRVILALNGIVWV 330
>gi|73669983|ref|YP_305998.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina barkeri
str. Fusaro]
gi|121731980|sp|Q469M4.1|ECR1_METBF RecName: Full=Probable exosome complex RNA-binding protein 1
gi|72397145|gb|AAZ71418.1| ribosomal RNA-processing protein RRP4 [Methanosarcina barkeri str.
Fusaro]
Length = 260
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 16/186 (8%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I E+ G+GT + ++ + CG+ + V L Y P D+VI
Sbjct: 6 VIPGDLIS--ENSKKAGYGTYVKNDKIYSLFCGIENLKEDKVGVIPLAGVYIPSANDVVI 63
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
G VI V P W ++I D + +S P I+ R M + D + V
Sbjct: 64 GIVIVVTPSNWIMDIASPYDGLFHVSE--YPRRIESRE-------MHEVLNVGDSIILRV 114
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGC 210
+ ++L R+ + KL+ GQ++ V+P V R H + +E + +G
Sbjct: 115 KDVDNSMKVELALRDSSFHKLKTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQ 174
Query: 211 NGYIWI 216
NG IWI
Sbjct: 175 NGRIWI 180
>gi|330508836|ref|YP_004385264.1| exosome complex RNA-binding protein RRP4 [Methanosaeta concilii
GP6]
gi|328929644|gb|AEB69446.1| exosome complex RNA-binding protein RRP4 [Methanosaeta concilii
GP6]
Length = 221
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
ED G GT + G + + + G+ +K I V L +Y P GD VIG V ++
Sbjct: 14 EDAKRSGEGTYIKDGSVYSLLYGLANYRDK-INVIPLAGKYMPAPGDNVIGVVKDITFSN 72
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W ++IN D +L +S +R DE M + V+ ++
Sbjct: 73 WIVDINSPYDGLLHISEFP-------KRIESDE--MSKYLRIGSSIMTRVKDVDPTMKVE 123
Query: 166 LQARNQKYGKLERGQLLTVD----PYLVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
L ++K G + GQ++ + P L+ + L +E + +G NG IWI
Sbjct: 124 LTLNDRKLGPIRTGQVIEISHTRVPRLIGKGGSMISMLKKEVNCSIFVGQNGRIWI 179
>gi|47157015|gb|AAT12380.1| hypothetical protein [Antonospora locustae]
Length = 103
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 153 AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
AEV+ G++ L ARN+KY KL G LL V LV R K F + I++IIG NG
Sbjct: 2 AEVQKIGKSGNILLHARNEKYKKLTYGVLLAVPIALVTRTKTCFVVCGQ--IEVIIGMNG 59
Query: 213 YIWIGEHVEARDKMV 227
Y++I +D V
Sbjct: 60 YVFISSCSNCKDAYV 74
>gi|16082285|ref|NP_394746.1| exosome complex RNA-binding protein Rrp4 [Thermoplasma acidophilum
DSM 1728]
gi|29336950|sp|Q9HIP3.1|ECR1_THEAC RecName: Full=Probable exosome complex RNA-binding protein 1
gi|10640636|emb|CAC12414.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 236
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 28/234 (11%)
Query: 35 CVTVGDTIPV---YEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
V GD I V +G+ +G Q + G ++ ++ + V +Y P G
Sbjct: 10 IVLPGDPIEVQGKMRNGVYRG-----QDNRYYSEYFGTLQVNDQFVDVVPFSGQYIPRKG 64
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D VIG+VIEV P W ++IN A+L ++ D R + +++ D +
Sbjct: 65 DKVIGKVIEVGPSTWTVDINSPYFAMLHMN-----DTPWRMSSG----DLKRYLNAGDYI 115
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD----PYLVKRRKQHFHHLEEY-GIDL 206
A++ S L + KLE G ++ + P ++ + + ++E +
Sbjct: 116 YAKIMSVNEIKESWLTLKEPGLKKLEGGHMVLIHASRVPRVIGKGGGMVNMVKELTATRI 175
Query: 207 IIGCNGYIWIGEHVEARDKMV-----VDQGSNSEQLIAKCDKNSMDL-DEQDGT 254
IIG NG IWI +E + +++ +++E L A+ + +L E+DG+
Sbjct: 176 IIGQNGLIWIDGPIEGVTMAIAAIEMIEREAHTEGLTARVESFLKELKGEKDGS 229
>gi|241569187|ref|XP_002402537.1| rrp4, putative [Ixodes scapularis]
gi|215502017|gb|EEC11511.1| rrp4, putative [Ixodes scapularis]
Length = 132
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 175 KLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIG 217
KL +G L+ V P LVKR K HFH+L G+ LI+G NGYIWI
Sbjct: 18 KLGQGTLVLVSPSLVKRCKTHFHNL-PCGVHLILGNNGYIWIA 59
>gi|312137047|ref|YP_004004384.1| ribosomal RNA-processing protein rrp4 [Methanothermus fervidus DSM
2088]
gi|380876879|sp|E3GZ90.1|ECR1_METFV RecName: Full=Probable exosome complex RNA-binding protein 1
gi|311224766|gb|ADP77622.1| ribosomal RNA-processing protein RRP4 [Methanothermus fervidus DSM
2088]
Length = 222
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
+ G GT ++ ++ ++V G+V K I V L+ +Y P+ D VIG+V++V RW ++
Sbjct: 22 IAGRGTFIEEDKIYSSVVGLVSIKGKRIEVIPLQGKYIPKKNDSVIGKVVDVKFARWIVD 81
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
I AIL +S + I + + N+ IF D + ++ ++L
Sbjct: 82 IRSPYSAILPVSEV-----IDKGKK-----NLEEIFGIGDTLFLKIIEVDEVKKVKLGLH 131
Query: 170 NQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEY-GIDLIIGCNGYIWI 216
KLE G L + P ++ R+ L++ ++++G NG IW+
Sbjct: 132 EGGPIKLEGGTLAYITPSKVPRVIGRKGSMIKMLKKLTNCEILLGQNGVIWV 183
>gi|300708351|ref|XP_002996356.1| hypothetical protein NCER_100548 [Nosema ceranae BRL01]
gi|239605652|gb|EEQ82685.1| hypothetical protein NCER_100548 [Nosema ceranae BRL01]
Length = 205
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
Query: 54 GTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFT 113
G + ++ + V G + R+ ++V + +RY P DIVIGRVI +KL+++
Sbjct: 24 GLYKEDNKIKSYVYGTLCRVQNHLFVISKTSRYFPYIDDIVIGRVIYSCADYYKLDLD-- 81
Query: 114 QDAILMLSSMNLPDGIQRRRTAV---DELNMRSIFTENDLVCAEVRSSQGDGSLQLQARN 170
I +L ++ + +R + + D L R I + + + S G+G +L
Sbjct: 82 -TYIGILPVLSFTNASKRNKPDIKKDDWLLCRIIESGAE----PILSCVGEGFGKLDGYV 136
Query: 171 QKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWI-GEHVEARD 224
K K+ Q+L VD +L K K+ Y +G NGYI I GE + RD
Sbjct: 137 FKI-KVWMCQMLYVDDFLYKIGKK-------YNFKCCVGINGYICITGEAITVRD 183
>gi|350534412|ref|NP_001232949.1| uncharacterized protein LOC100575257 [Acyrthosiphon pisum]
gi|239799156|dbj|BAH70511.1| ACYPI56194 [Acyrthosiphon pisum]
Length = 236
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 24/154 (15%)
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM------NLPD 127
+K ++ + +Y P D+V+G V + +K++I ++ A L + N PD
Sbjct: 57 DKYFWIEYFKKKYIPAKDDVVVGIVAAKTSEMYKVDIGASELATLPYLAFTNATKKNRPD 116
Query: 128 GIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD-P 186
I+ ++ M + F E+++ C E A + +G+LE G L+ V
Sbjct: 117 -IKVGNVVAAKIKMATPFMESEISCVE------------YANSIIFGQLENGFLINVSLN 163
Query: 187 YLVKRRKQHFHHLEEYG----IDLIIGCNGYIWI 216
Y ++ RK + L + G +++IG NG IWI
Sbjct: 164 YALRLRKSNSKLLYQLGQMVPYEIVIGANGKIWI 197
>gi|406602832|emb|CCH45608.1| exosome complex exonuclease [Wickerhamomyces ciferrii]
Length = 232
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEI-NFTQDAILMLSSMNLPDGIQRRRTA 135
+Y+ + RY P+ D VIG+VI +K+ + NF+ + LSSM P+ ++ R
Sbjct: 52 LYIESNSRRYIPQQNDFVIGKVIGSFGDVFKVSLSNFSNS--VSLSSMAFPNATKKNRPN 109
Query: 136 VDELNMRSIFTENDLVCAEVRSSQGDGSLQLQ------ARNQKYGKLERGQLLTVD---- 185
+ N LV A V ++ + +L+ ++ +G LE G LL V
Sbjct: 110 IKNGN---------LVYARVSNANKEIDTELECIDPTTGKDGGFGLLEGGYLLEVSLSFA 160
Query: 186 -PYLVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
L + Q + L ++ ++ IGCNG IWI
Sbjct: 161 RFLLFNPQCQILNELVKKCKFEIAIGCNGLIWI 193
>gi|167044150|gb|ABZ08832.1| hypothetical protein ALOHA_HF4000APKG5E24ctg1g3 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 219
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P + GD P ++ IL+G+ L +T G E + L+ V L Y P+T
Sbjct: 9 PGDVIVTGDYRP-EQNVILEGN-------RLMSTATGFSEIKDDLVTVTPLTGLYTPKTD 60
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D+VIG+++ W+++IN IL S + D R D+L+++ D++
Sbjct: 61 DLVIGKIVSHNALSWEVDINSYYSGILTASDIFGKDYSPSR----DDLSLK--LKTGDII 114
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID--LIIG 209
A + + L + + G+++ G+L+ + P + R E + + +G
Sbjct: 115 LARIANVNSRDPL-ITITGENLGRIDSGELIKISPTKIPRLTGSVIQTIEASTNATITVG 173
Query: 210 CNGYI 214
NG I
Sbjct: 174 QNGLI 178
>gi|167044508|gb|ABZ09183.1| hypothetical protein ALOHA_HF4000APKG6J21ctg1g48 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 219
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P + GD P ++ IL+G+ L +T G + + L+ V L Y P+T
Sbjct: 9 PGDVIVTGDYRP-EQNVILEGN-------RLMSTATGFSKIKDDLVTVTPLTGLYTPKTD 60
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D+VIG+++ W+++IN IL S + D R D+L+++ D++
Sbjct: 61 DLVIGKIVSHNALSWEVDINSYYSGILTASDIFGKDYSPSR----DDLSLK--LKTGDII 114
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID--LIIG 209
A + + L + + GK++ G+L+ + P + R E + + +G
Sbjct: 115 LARIANVNSRDPL-ITITGENLGKIDSGELIKISPTKIPRLTGSVIQTIEASTNATITVG 173
Query: 210 CNGYI 214
NG I
Sbjct: 174 QNGLI 178
>gi|329766297|ref|ZP_08257844.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393796025|ref|ZP_10379389.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137199|gb|EGG41488.1| exosome complex RNA-binding protein Rrp4 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 226
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P +T G P ++ IL G+ ++ AT G+ E + I V L +Y P+
Sbjct: 10 PGDVITTGPYRP-EQNVILDGN-------KIIATSIGISEIYDDSIKVIPLTGKYIPKID 61
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA-VDELNMRSIFTENDL 150
D+VIG+VI W+L+IN L D R +A DEL + DL
Sbjct: 62 DLVIGKVISHTSLSWELDINSCYVGFLPAQ-----DVFGRDFSAHADELTSK--LKSGDL 114
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLE-EYGID 205
V A + + + ++ GK++ G L+ + P L+ +R +E G
Sbjct: 115 VAARIANFDRTRDPLVTIADRDLGKIDSGTLVKISPSKVPRLIGKRGTMIQMIEMATGAA 174
Query: 206 LIIGCNGYI 214
+ IG NG+I
Sbjct: 175 VTIGQNGWI 183
>gi|116754660|ref|YP_843778.1| exosome complex RNA-binding protein Rrp4 [Methanosaeta thermophila
PT]
gi|116666111|gb|ABK15138.1| ribosomal RNA-processing protein RRP4 [Methanosaeta thermophila PT]
Length = 221
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
ED G GT + G++ + + G+ ++ I V L +Y P GD VIG V ++
Sbjct: 14 EDTRRAGEGTYVRNGKVYSLLYGIASFRDR-ISVIPLAGKYIPAVGDNVIGVVKDITFSN 72
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W L+IN D +L +S +D +M V A V+ ++
Sbjct: 73 WILDINSPYDGLLHISEFP---------KKIDVEDMSKYLRIGSSVMARVKDVDPAMKVE 123
Query: 166 LQARNQKYGKLERGQLLTVD----PYLVKRRKQHFHHL-EEYGIDLIIGCNGYIWIGEHV 220
L +++ G ++ G+++ + P L+ + L +E ++ +G NG IW+ +
Sbjct: 124 LTLNDRRLGVIKTGRVVEISHTRVPRLIGKGGSMISMLKKELNCNIFVGQNGRIWVSGNE 183
Query: 221 EARD 224
E D
Sbjct: 184 EDMD 187
>gi|20090628|ref|NP_616703.1| exosome complex RNA-binding protein Rrp4 [Methanosarcina
acetivorans C2A]
gi|29336814|sp|Q8TPX7.1|ECR1_METAC RecName: Full=Probable exosome complex RNA-binding protein 1
gi|19915671|gb|AAM05183.1| RNA-binding protein [Methanosarcina acetivorans C2A]
Length = 260
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + ++ +++CG+ + V L Y P D+VIG VI V P W +I
Sbjct: 20 GYGTYVKNDKIYSSLCGIENLKEDKVGVIPLAGAYIPSANDVVIGIVIVVTPSNWIFDIA 79
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
D +L +S RR V+ M I D V V+ ++L R+
Sbjct: 80 APYDGLLHVSEY------PRR---VESREMPEILNVGDSVILRVKDVDSSMKVELALRDP 130
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
KL+ GQ++ V+ V R H + +E + +G NG IWI
Sbjct: 131 SLHKLKTGQIIKVESVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI 180
>gi|386876615|ref|ZP_10118714.1| KH domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386805577|gb|EIJ65097.1| KH domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 226
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P VT G P ++ IL+G+ ++ +T G+ E + + V L +Y P+
Sbjct: 10 PGDVVTTGPFRP-EQNVILEGN-------KIISTTIGISEIYDDSVKVIPLTGKYIPKIN 61
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA-VDELNMRSIFTENDL 150
D+VIG+VI W+L+IN L D R +A DEL + DL
Sbjct: 62 DLVIGKVISHTSLSWELDINSCYVGFLPAQ-----DVFGRDFSAHADELATK--LKSGDL 114
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHLEEYGID-- 205
V A + + + ++ GK++ G L+ + P V R ++ + E D
Sbjct: 115 VAARIANFDRTRDPLVTISDRDLGKIDSGDLIKISPSKVPRLIGKRGTMIQMIEMATDAA 174
Query: 206 LIIGCNGYI 214
+ IG NG++
Sbjct: 175 ITIGQNGWV 183
>gi|48477467|ref|YP_023173.1| exosome complex RNA-binding protein Rrp4 [Picrophilus torridus DSM
9790]
gi|74568056|sp|Q6L222.1|ECR1_PICTO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|48430115|gb|AAT42980.1| 3'->5' exoribonuclease [Picrophilus torridus DSM 9790]
Length = 230
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 14/177 (7%)
Query: 53 HGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINF 112
+G ++ E + GVV++ +K I + Y P D VIG+VI+V W ++IN
Sbjct: 22 NGLYEENDEYYSEYFGVVQKSDKFIDIVPFNGPYMPRINDKVIGKVIDVSATMWTVDINS 81
Query: 113 TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQK 172
S M++ D + ++R D + A+V L ++
Sbjct: 82 P-----YFSLMHMNDTPWHVTSG----DLRKYLNVGDYIYAKVSILNEIKESWLSLKDVN 132
Query: 173 YGKLERGQLLTVD----PYLVKRRKQHFHHLE-EYGIDLIIGCNGYIWIGEHVEARD 224
KLE G ++ + P ++ + + ++ E +I+G NG IWI E D
Sbjct: 133 LRKLEEGSIIYIKAPKVPRVIGKAGNMINMIKSETNTKIIVGQNGLIWIDGEPENVD 189
>gi|284161627|ref|YP_003400250.1| KH type 1 domain-containing protein [Archaeoglobus profundus DSM
5631]
gi|284011624|gb|ADB57577.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
Length = 281
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G T + ++ A V G++++ ++ V L+ RY P GD VIG V EV W ++I
Sbjct: 23 GPNTYVEGNKVYARVLGLLDKTETMVKVIPLKGRYVPSLGDTVIGIVKEVTANGWIVDIL 82
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L +Q + D + A+V + + L +++
Sbjct: 83 SPYVAFL---------PVQENPAMRPNKKPNEVLDIGDAIIAKVMNIDPKMRVTLTMKDK 133
Query: 172 KYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
+ G+++ ++P V R +K L E + +I+G NG IWI
Sbjct: 134 LCRPIRVGRIVVINPTRVPRVIGKKGSMIKLLKSELDVQIIVGQNGLIWI 183
>gi|126274033|ref|XP_001387383.1| exosome complex component RRP40 [Scheffersomyces stipitis CBS 6054]
gi|126213253|gb|EAZ63360.1| Exosome complex exonuclease RRP40 (Ribosomal RNA processing protein
40) [Scheffersomyces stipitis CBS 6054]
Length = 260
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 37/223 (16%)
Query: 36 VTVGDTIPVYEDGILK---GHGT--SDQKGELAATVCGVVE------RINKLIYVRALRA 84
+ GD +P+ D +K G G + Q + T G++ N+L+Y+ +
Sbjct: 6 IIPGDFLPIDTDSSIKTTIGPGIYKNPQTQSILPTNAGLINIQKSKAGTNQLVYIESNSK 65
Query: 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI 144
RY P+T D VIG V V+ + +K+++ A+L LS M P+ ++ R N++
Sbjct: 66 RYTPQTNDFVIGIVTGVIGESYKVQLQDFSPAVL-LSMMAFPNATKKNRP-----NLKI- 118
Query: 145 FTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVK-----RRKQHFH-- 197
V A V + + +L+ + GK LL Y+ + R+ F+
Sbjct: 119 ---GQAVYARVSEAIPEIETELECIDPTTGKEGGFGLLDESGYIFEVNLNFARELLFNAN 175
Query: 198 --HLEEYG----IDLIIGCNGYIWI--GEHVE-ARDKMVVDQG 231
LE+ ++ +G NG +WI GE ++ +D++V ++G
Sbjct: 176 SIFLEKLASKCKFEIAVGINGKVWIKCGEGIKIEKDRVVPEEG 218
>gi|384487112|gb|EIE79292.1| hypothetical protein RO3G_03997 [Rhizopus delemar RA 99-880]
Length = 228
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 33/199 (16%)
Query: 36 VTVGDTIPV-YEDGILKGHGTSDQKGELAATVCGVVERI--NKLIYVRALRARYKPETGD 92
V GD IPV E ++ G G + E+ AT G++ + ++ + + RY TG+
Sbjct: 8 VLPGDAIPVNTESTVILGPGLRQEGDEVVATKAGILRHLESGNRWWIESNQKRYVASTGE 67
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF------- 145
VIG VI + + ++++I A+L + + +G +R L++RS+
Sbjct: 68 SVIGTVIAKLGEYFRVDIGTAHAAVLPMLAF---EGATKRNRP--NLSVRSLVYCRVAMA 122
Query: 146 ---TENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL--- 199
E +L C + +GDG +G+L G + T L +R +
Sbjct: 123 NRDMEAELECVNPTTGKGDG----------FGELVGGYVFTGSLGLCRRLLNPNTPILTL 172
Query: 200 --EEYGIDLIIGCNGYIWI 216
E + + +G NG IW+
Sbjct: 173 LGEHFPFETAVGMNGRIWV 191
>gi|340344303|ref|ZP_08667435.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519444|gb|EGP93167.1| KH type 1 domain protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 226
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P +T G P ++ IL G+ ++ +T G+ E + I V L +Y P+
Sbjct: 10 PGDVITTGPFRP-EQNVILDGN-------KIISTAIGISEIFDDSIKVIPLTGKYIPKID 61
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA-VDELNMRSIFTENDL 150
D+VIG+V+ W+L+IN L D R +A DEL+ + DL
Sbjct: 62 DLVIGKVVSHTSLSWELDINSCYVGFLPAQ-----DVFGRDFSAHADELSSK--LKAGDL 114
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD----PYLVKRRKQHFHHLE-EYGID 205
V A + + + ++ GK++ G L+++ P L+ +R +E
Sbjct: 115 VAARIANFDRTRDPLVTIADRDLGKIDSGHLVSISTSKVPRLIGKRGTMIQMIEMATNAA 174
Query: 206 LIIGCNGYI 214
+ IG NG+I
Sbjct: 175 ITIGQNGWI 183
>gi|13541137|ref|NP_110825.1| exosome complex RNA-binding protein Rrp4 [Thermoplasma volcanium
GSS1]
gi|29336900|sp|Q97BZ6.1|ECR1_THEVO RecName: Full=Probable exosome complex RNA-binding protein 1
gi|14324524|dbj|BAB59451.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 236
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 67 CGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLP 126
G ++ ++ + V +Y P GD VIG++IEV P W ++IN A+L ++
Sbjct: 40 FGTLQVSDQYVDVVPFSGQYIPRKGDKVIGKIIEVGPSTWTVDINSPYFAMLHMNDTPW- 98
Query: 127 DGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD- 185
+ +++ D V A++ S L + KLE G ++ +
Sbjct: 99 --------RISSGDLKRYLNSGDYVYAKIMSVNEIKESWLTLKEPGLKKLEGGHMVLIHA 150
Query: 186 ---PYLVKRRKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEA 222
P ++ + + ++E +IIG NG IWI +E
Sbjct: 151 SRVPRVIGKGGGMVNMVKELTSTRIIIGQNGLIWIDGPIEG 191
>gi|315427140|dbj|BAJ48755.1| exosome complex component RRP4 [Candidatus Caldiarchaeum
subterraneum]
gi|315427159|dbj|BAJ48773.1| exosome complex component RRP4 [Candidatus Caldiarchaeum
subterraneum]
gi|343485774|dbj|BAJ51428.1| exosome complex component RRP4 [Candidatus Caldiarchaeum
subterraneum]
Length = 223
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + G++ A+V G + IN ++ + + RY+P+ GD V+G V +V P +++I
Sbjct: 24 GLGTYVRDGKVYASVMGFAKSINGVLRIIPVSGRYRPQRGDKVLGIVSDVKPNAVEVDIG 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A++ R T ++++ D V AEV+++ G + +
Sbjct: 84 GETTAVIKP---------HERETTPLKIDI------GDCVLAEVKAT---GLKGIVLATE 125
Query: 172 KYGKLERGQLLTVD----PYLVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
K+ G L++V+ P ++ R+ L E G D +G NG I +
Sbjct: 126 GLQKIPSGILVSVNAAKVPRIIGRKGSMLQILRRETGCDFWVGRNGLIVV 175
>gi|281202144|gb|EFA76349.1| Putative nuclease [Polysphondylium pallidum PN500]
Length = 245
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 101/224 (45%), Gaps = 28/224 (12%)
Query: 29 KSNPNSCVTVGDTIPVYEDGILK-GHGTSDQKGELAATVCGVV--ERINKLIYVRALRAR 85
+SN + V GD I D ++ G G K + A+ CGV+ + +K ++ + R
Sbjct: 2 ESNIDKFVLPGDCIGTISDLKVRIGPGLIQVKDTVIASKCGVLRFSKYHKFYWIENEQKR 61
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNM---R 142
+ P+ D+VIG +++ P+ +K++I ++ +LS+ + + + + N+ R
Sbjct: 62 FVPQVEDMVIGIIVDKHPESFKVDIG--SSSLALLSAYSFEGATKNNKPLLQVGNLVYCR 119
Query: 143 SIFTEND----LVCAEVRSSQGDGSLQLQARNQKYGKLERGQL----LTVDPYLVKRRKQ 194
+ D LVC VR+ + + YG+L G + L + YL+ +
Sbjct: 120 VLIANKDMEPELVCMSVRN-----------KAEGYGQLVNGYMFNCSLGLSHYLLSEDCE 168
Query: 195 HFHHLEEY-GIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQL 237
L ++ ++ +G NG +W+ + +V + NS+ +
Sbjct: 169 ILKILGKHIAYEIAVGVNGRVWVNSMDNQQTIIVANTILNSQYM 212
>gi|167044979|gb|ABZ09644.1| hypothetical protein ALOHA_HF4000APKG8G2ctg1g34 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 219
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P + GD P ++ IL+G+ +L +T G E + L+ V L Y P+T
Sbjct: 9 PGDVIVTGDYRP-EQNVILEGN-------KLMSTAIGFSEIKDDLVTVTPLTGLYTPKTD 60
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D+VIG+++ W+++IN IL S + D R D+L+++ D++
Sbjct: 61 DLVIGKIVSHNALSWQVDINSYYSGILTASDIFGKDYSPSR----DDLSLK--LKTGDII 114
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID--LIIG 209
A + + L + + GK++ G+L+ + + R E + + +G
Sbjct: 115 LARIANVNSRDPL-ITIIGENLGKIDSGELIKISSTKIPRLTGSVIQTIEASTNATITVG 173
Query: 210 CNGYI 214
NG I
Sbjct: 174 QNGLI 178
>gi|52550029|gb|AAU83878.1| conserved hypothetical protein [uncultured archaeon GZfos34H10]
Length = 223
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + G + A GVV+ I V AL +Y P GD+VIG+++E+ W ++I
Sbjct: 19 GGGTYVEDGNVYALKYGVVDD-RGTIKVVALSGKYMPVNGDVVIGKIVEISFPYWIVDIA 77
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
+A L S R +D NM +DL+ A+V + + L +N+
Sbjct: 78 SPYEARLRKSEFG-------RGENIDFGNMCEYLDIDDLIVAKVMNVDVMMRIDLALKNE 130
Query: 172 KYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
+ G+L+ V P V R R L ++ + + NG IWI
Sbjct: 131 -FKMDGVGRLIEVSPTKVPRIIGRSGSMIRLLKDKCNCFIFVAKNGRIWI 179
>gi|378729640|gb|EHY56099.1| exosome complex exonuclease RRP40 [Exophiala dermatitidis
NIH/UT8656]
Length = 245
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 32/186 (17%)
Query: 52 GHG--TSDQKGELAATVCGV--VERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
GHG + AT+ G+ V+ K + ARY P+ GD+VI + +
Sbjct: 27 GHGLLPDPESDSFIATIGGLLQVDWRKKSAQISTPNARYIPKPGDLVIAQFRASSTDFFH 86
Query: 108 LEIN-FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
L IN + AIL + +G ++ R NDLV A+V S+Q + ++L
Sbjct: 87 LYINPHSPQAILPQLAF---EGATKK--------TRPQLKANDLVYAKVVSAQKNMDIEL 135
Query: 167 QARNQKYGK--------LERGQLLTVDPYLVKR--RKQHFHHLEEY------GIDLIIGC 210
N GK L G + V P L +R +KQ+ ++E G ++ +G
Sbjct: 136 SCVNPSTGKSEPDGLGPLSGGMVFDVSPGLAERLLKKQNVLAMDELGSRLQGGFEIAVGK 195
Query: 211 NGYIWI 216
NG +W+
Sbjct: 196 NGKVWV 201
>gi|167043478|gb|ABZ08175.1| putative KH domain protein [uncultured marine microorganism
HF4000_APKG2H5]
Length = 223
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 47 DGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRW 106
+G GHG G L AT G V + + LR Y P D+VIG V W
Sbjct: 30 EGHAAGHGVLVMDGRLRATKQGRVMTNENTVSIEPLRTAYTPRPSDLVIGFVEGCTNNIW 89
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166
++I +AIL M+L G + A RS+ + V V+ + S L
Sbjct: 90 FIDIGAPFNAIL---PMSLGPG----KAAFG--GTRSLMDIGEAVICRVQEVEETHSSVL 140
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRK----QHFHHL-EEYGIDLIIGCNGYIWIGEHVE 221
+ K+ G + +DP+L+ R K + L E+ +I+ NG +WI ++
Sbjct: 141 TMKGMGLRKIRSGTIEEIDPHLLGRLKGKAGRSLRQLKEDTDCRIIVADNGRLWIDGEID 200
Query: 222 A 222
Sbjct: 201 G 201
>gi|350645157|emb|CCD60165.1| rrp4, putative [Schistosoma mansoni]
Length = 139
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 15/79 (18%)
Query: 24 ESLSSKSNPNSCVTV-GDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
E LSS NP++ +V GD GI Q G + ++ G V +NKL+YV
Sbjct: 68 EDLSSAVNPDTLASVNGD------PGI--------QAGNIHTSLTGRVRIVNKLVYVEPP 113
Query: 83 RARYKPETGDIVIGRVIEV 101
+ARY GD V+GR++EV
Sbjct: 114 KARYFGNVGDTVVGRIVEV 132
>gi|218884636|ref|YP_002429018.1| exosome complex RNA-binding protein Rrp4 [Desulfurococcus
kamchatkensis 1221n]
gi|218766252|gb|ACL11651.1| exosome complex RNA-binding protein Rrp4 [Desulfurococcus
kamchatkensis 1221n]
Length = 239
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 23/192 (11%)
Query: 39 GDTIPVYEDGIL---------KGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPE 89
GD + + E+GI+ K D K + + V G+V +K I V L + Y P
Sbjct: 14 GDCLAILEEGIISNEIKRYPDKHIYVLDNK--VYSDVLGIVYIEDKDINVIPLESVYYPR 71
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
D VIG V + W ++I AIL S D I+ N+R+ D
Sbjct: 72 KDDTVIGIVDSIGVTSWSIDIRAPYKAILPGS-----DVIEGFNPITH--NLRNYLDTGD 124
Query: 150 LVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGI 204
L+ A++ L + + GK+ G ++ + P V R +K ++L + G
Sbjct: 125 LILAKIAIFDRTRDPMLTTKGKGLGKILEGVVVEIKPSKVARLVGKKGSMYNLLSSKSGC 184
Query: 205 DLIIGCNGYIWI 216
D+ I NGY+W+
Sbjct: 185 DITIAQNGYVWL 196
>gi|256089015|ref|XP_002580614.1| rrp4 [Schistosoma mansoni]
Length = 148
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 15/79 (18%)
Query: 24 ESLSSKSNPNSCVTV-GDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
E LSS NP++ +V GD GI Q G + ++ G V +NKL+YV
Sbjct: 68 EDLSSAVNPDTLASVNGDP------GI--------QAGNIHTSLTGRVRIVNKLVYVEPP 113
Query: 83 RARYKPETGDIVIGRVIEV 101
+ARY GD V+GR++EV
Sbjct: 114 KARYFGNVGDTVVGRIVEV 132
>gi|336477104|ref|YP_004616245.1| K-like, type 1, subgroup [Methanosalsum zhilinae DSM 4017]
gi|335930485|gb|AEH61026.1| K-like, type 1, subgroup [Methanosalsum zhilinae DSM 4017]
Length = 257
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT ++G++ +++ GV+ NK + V +Y P D VIG V+++ W ++
Sbjct: 20 GLGTYVKEGKVYSSLYGVLNIKNK-VDVIPFSGKYIPRAKDYVIGTVVDITSSNWFFDVR 78
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
+L +S +R V+ M + D V+ ++L R +
Sbjct: 79 APYTGMLHVSEY------PKR---VESSQMSDLLDVGDSAILRVKDVDQSMKVELTLRER 129
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWIGEHVEARDKM 226
+++ G+++ + P V R H + +E ++ +G NG IWI E D++
Sbjct: 130 GLKRIKIGRVIEIPPSKVPRIIGHGGSMVSMLKKETKCEIFVGQNGRIWINGPEENMDQL 189
>gi|403213304|emb|CCK67806.1| hypothetical protein KNAG_0A01170 [Kazachstania naganishii CBS
8797]
Length = 236
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTS--DQKGELAATVCGVVERINK--LIYVRALRARYK 87
P + + D +PV + G G S E+ GV I K +YV RY
Sbjct: 7 PGDSLGIHDGVPV-----ILGPGVSCDPMTQEVIPVNAGVRHYIEKKNTVYVDYNAKRYI 61
Query: 88 PETGDIVIGRVIEVVPKRWKLEI-NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFT 146
P GD+VIG ++ +K+ + +F+ A + LS M+ P+ ++ R +
Sbjct: 62 PAVGDLVIGTIVSTFADSYKVSLSDFS--ASVSLSYMSFPNATKKNRPTLQ--------- 110
Query: 147 ENDLVCAEVRSSQGDGSLQLQARNQ------KYGKLERGQLLTVDPYLVKRR---KQHFH 197
DLV A V +++ + +++ + +G LE G +++V P R F
Sbjct: 111 VGDLVYARVLTAEKELEAEIECMDSVTGVHAGFGLLENGMVISV-PLSFARTLLFNDTFP 169
Query: 198 HLEEYG----IDLIIGCNGYIWI 216
L ++ IG NG IW+
Sbjct: 170 LLSTLAQSCQFEIAIGINGRIWV 192
>gi|385806379|ref|YP_005842777.1| exosome complex RNA-binding protein Rrp4 [Fervidicoccus fontis
Kam940]
gi|383796242|gb|AFH43325.1| exosome complex RNA-binding protein Rrp4 [Fervidicoccus fontis
Kam940]
Length = 242
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM 123
+++ G+VE + ++ Y P+ D+VIG + +V P W +++N + L +S
Sbjct: 41 SSIIGMVEIKDDKLFFYPKEQIYIPKPNDLVIGLITDVGPTYWDVDLNSPYEGQLPVSET 100
Query: 124 NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLT 183
L R+T MR + D V +V S L R + GK+ G+++
Sbjct: 101 PL------RQTHATVDTMRKFLSIGDFVALKVLSFDRLRDPLLTMRGKGLGKIYGGKVID 154
Query: 184 VDPY----LVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
+ + L+ R++ + +E +++I NG +WI
Sbjct: 155 IAQHAVNSLINRKRALVEAIVKETKTEILISNNGRVWI 192
>gi|146422450|ref|XP_001487163.1| hypothetical protein PGUG_00540 [Meyerozyma guilliermondii ATCC
6260]
Length = 249
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 24/200 (12%)
Query: 34 SCVTVGDTIPVYEDGILKGHGTSDQK--GELAATVCGVV-ERINK-----LIYVRALRAR 85
S + GD IP E G G Q + G+V ++INK L+YV + R
Sbjct: 2 SVIIPGDHIPPNEVKTTIGPGFYRQPITDNVVPVSAGIVHDKINKQGTNRLLYVDSNSKR 61
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y P+ D VIG V V+ + +K+ + ++L LS M P+ ++ R + N ++++
Sbjct: 62 YIPQVNDFVIGIVTGVIGEAYKVSLQGFSSSVL-LSMMAFPNANKKNRPNLK--NGQAVY 118
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKL-ERGQLLTVDPYLVKRRKQHFHH----LE 200
+E+ S + + +G L E G + V+ L R F H LE
Sbjct: 119 ARVTKAMSEIESEI--ECMDSSGKEGGFGVLSESGLIFEVN--LHYARDLLFSHNSPILE 174
Query: 201 EYG----IDLIIGCNGYIWI 216
+ ++ IG NG IWI
Sbjct: 175 KLSSKCKFEIAIGINGKIWI 194
>gi|449330265|gb|AGE96525.1| hypothetical protein ECU09_1240 [Encephalitozoon cuniculi]
Length = 189
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD +P L HG A+V G + R++ ++V + RY+P DIVI
Sbjct: 8 VLPGDEVPSGGSRSLGIHGNR-------ASVVGSLCRVSNHLFVVSKTNRYQPCIDDIVI 60
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
G+V+ K+++ T A L S++ + +R + V + + L+C V
Sbjct: 61 GKVVLTSQDMHKVDLGGTVGA---LPSLSFTNATKRNKPEVSK--------GDHLLCKIV 109
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGC 210
R G L L + +GKL +G +L + P+ K R + ++Y + +G
Sbjct: 110 R--MGTEPL-LTCVGEGFGKL-KGAVLPLSPW--KVRLLYLSDTLSTVGKKYRFRIALGL 163
Query: 211 NGYIWI 216
NG++WI
Sbjct: 164 NGFVWI 169
>gi|330835839|ref|YP_004410567.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera cuprina
Ar-4]
gi|329567978|gb|AEB96083.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera cuprina
Ar-4]
Length = 247
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 26/221 (11%)
Query: 58 QKGELAATVCGVVERINKLIYVRALR-ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDA 116
Q + A+V G++E + V L + Y P GD VI V +V W ++I A
Sbjct: 37 QSNKYFASVVGILEIKEPVFEVIPLEGSHYYPRIGDTVIALVKDVEQYGWIVDIKAPYSA 96
Query: 117 ILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKL 176
L +S+ R V E ++R D V A++ S L + + G++
Sbjct: 97 YLPAASL------LGRPANVGE-DLRRYIDVGDFVIAKLESFDRTSDPTLSVKGKGLGRV 149
Query: 177 ERGQLLTVDPYLVKR-----RKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMV---- 227
G ++ V P V R R E G DLI+ NG +W ++K++
Sbjct: 150 STGTVIDVLPVKVPRIVGKGRSMMDTLSTETGCDLIVAQNGRVWANCPSIEKEKILITAI 209
Query: 228 --VDQGSNSEQL---IAKCDKNSMDLDEQDGTCTPREARQN 263
++Q S+++ L I K K S+ D + T EA+ N
Sbjct: 210 RTIEQESHTKGLTDRIKKLIKESLG----DKSVTSSEAQTN 246
>gi|313236852|emb|CBY12103.1| unnamed protein product [Oikopleura dioica]
Length = 226
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
G + T G+V+ +N + ++ R RY P GD+V+G V P +++IN + A
Sbjct: 31 GSIHVTESGIVKGMNNMAWMEGARRRYIPVKGDLVLGVVTHKHPDYVRVDINAPELA--T 88
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFT---------ENDLVCAEVRSSQGDGSLQLQARN 170
LS++ +R + A++ ++ +F E ++VC +R+ + DG +Q ++
Sbjct: 89 LSTLAFESATKRNKIAINLGDL--VFAKVSVALPDLEPEVVCCNMRTGKADGMGVIQPQS 146
>gi|313240028|emb|CBY32387.1| unnamed protein product [Oikopleura dioica]
Length = 226
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
G + T G+V+ +N + ++ R RY P GD+V+G V P +++IN + A
Sbjct: 31 GSIHVTESGIVKGMNNMAWMEGARRRYIPVKGDLVLGVVTHKHPDYVRVDINAPELA--T 88
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFT---------ENDLVCAEVRSSQGDGSLQLQARN 170
LS++ +R + A++ ++ +F E ++VC +R+ + DG +Q ++
Sbjct: 89 LSTLAFESATKRNKIAINLGDL--VFAKVSVALPDLEPEVVCCNMRTGKADGMGVIQPQS 146
>gi|328865190|gb|EGG13576.1| Putative nuclease [Dictyostelium fasciculatum]
Length = 286
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 16/190 (8%)
Query: 36 VTVGDTIPVYEDGILK-GHGTSDQKGELAATVCGVV--ERINKLIYVRALRARYKPETGD 92
V GD I +D ++ G G K ++ A+ GV+ + +K ++ + RY P+ D
Sbjct: 64 VVPGDAIGQIDDLKVRIGPGLLQNKDQVVASKAGVLRFSKFHKFYWIENEQKRYVPQAED 123
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEN---- 148
+VIG ++E P+ +K++I + A+L S + ++ L + N
Sbjct: 124 MVIGIILEKHPESFKVDIGSSSPAMLSAYSFEGATKSNKPLLSIGNLVYCRVLVANKDME 183
Query: 149 -DLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ-LLTVDPYLVKRRKQHFHHLEEYGIDL 206
+LVC +R ++ +G QL L LL+ D ++K H + ++
Sbjct: 184 PELVCVSIR-NKAEGFGQLIGGYMFNCSLGLSHYLLSEDCSILKIVGTHIPY------EI 236
Query: 207 IIGCNGYIWI 216
+G NG +W+
Sbjct: 237 AVGVNGRVWV 246
>gi|407464318|ref|YP_006775200.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
sp. AR2]
gi|407047506|gb|AFS82258.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
sp. AR2]
Length = 227
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P VT G P ++ IL+G ++ +T G+ E + + V L +Y P+
Sbjct: 10 PGDVVTTGPFRP-EQNVILEGD-------KIISTTIGISEIYDDSVKVIPLTGKYIPKIN 61
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA-VDELNMRSIFTENDL 150
D+VIG+VI W+L+IN L D R +A DEL + DL
Sbjct: 62 DLVIGKVISHSSLSWELDINSCYVGFLPAQ-----DVFGRDFSAHADELTSK--LKSGDL 114
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLE-EYGID 205
V A + + + ++ GK++ G L+ + P L+ +R +E
Sbjct: 115 VAARIANFDRTRDPLVTISDRDLGKIDSGDLVKISPSKVPRLIGKRGSMIQMIEMATNAA 174
Query: 206 LIIGCNGYI 214
+ IG NG++
Sbjct: 175 VTIGQNGWV 183
>gi|85014359|ref|XP_955675.1| hypothetical protein ECU09_1240 [Encephalitozoon cuniculi GB-M1]
gi|19171369|emb|CAD27094.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
Length = 189
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD +P L HG A+V G + R++ ++V + RY+P DIVI
Sbjct: 8 VLPGDEVPSGGSRSLGIHGNR-------ASVVGSLCRVSNHLFVVSKTNRYQPCIDDIVI 60
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
G+V+ K+++ T A L S++ + +R + V + + L+C V
Sbjct: 61 GKVVLTSQDMHKVDLGGTVGA---LPSLSFTNATKRNKPEVSK--------GDHLLCKIV 109
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGC 210
R G L L + +GKL +G +L + P+ K R + ++Y + +G
Sbjct: 110 R--MGTEPL-LTCVGEGFGKL-KGAVLPLSPW--KVRLLYLSDTLSIVGKKYRFRIALGL 163
Query: 211 NGYIWI 216
NG++WI
Sbjct: 164 NGFVWI 169
>gi|407461956|ref|YP_006773273.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045578|gb|AFS80331.1| exosome complex RNA-binding protein Rrp4 [Candidatus Nitrosopumilus
koreensis AR1]
Length = 226
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P VT G P ++ IL+G+ ++ +T G+ E + + V L +Y P+
Sbjct: 10 PGDVVTTGPFRP-EQNVILEGN-------KIISTTIGISEIYDDSVRVIPLTGKYIPKIN 61
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA-VDELNMRSIFTENDL 150
D+VIG+V W+L+IN L D R +A DEL + DL
Sbjct: 62 DLVIGKVNSHTSLSWELDINSCYVGFLPAQ-----DVFGRDFSAHADELATK--LKTGDL 114
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHLEEYGID-- 205
V A + + + ++ GK++ G L+ + P V R +K + E D
Sbjct: 115 VAARIANFDRTRDPLVSISDRDLGKIDSGDLVEISPSKVPRLIGKKGSMIQMIEEATDAA 174
Query: 206 LIIGCNGYI 214
+ IG NG++
Sbjct: 175 ITIGQNGWV 183
>gi|40217445|emb|CAE46378.1| conserved hypothetical protein [uncultured archaeon]
gi|268323828|emb|CBH37416.1| putative exosome complex RNA-binding protein 1 [uncultured
archaeon]
Length = 223
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + G + A GVV+ I V AL +Y P GD+V+G++ E+ W ++I
Sbjct: 19 GEGTYVEDGNVYALKYGVVDD-RGTIKVVALSGKYMPVNGDVVVGKIAEISFPYWIVDIA 77
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
+A L S R +D NM +DL+ A+V + + L +N+
Sbjct: 78 SPYEARLHKSEFG-------RGEKIDFGNMCEYLDIDDLIVAKVMNVDVMMRIDLALKNE 130
Query: 172 KYGKLER-GQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
K++ G+L+ V P V R R L ++ + + NG IWI
Sbjct: 131 F--KMDGIGRLIEVSPTKVPRIIGRSGSMIRLLKDKCNCFIFVAKNGRIWI 179
>gi|347524280|ref|YP_004781850.1| KH domain containing protein [Pyrolobus fumarii 1A]
gi|343461162|gb|AEM39598.1| KH domain protein [Pyrolobus fumarii 1A]
Length = 238
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 62 LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLS 121
L +T+ G+ + I V L Y P+ GDIVIG +++V W+++I AIL
Sbjct: 38 LYSTILGLADVQENKIGVIPLEGPYIPKPGDIVIGLIVDVGVTHWEVDIRAPYTAILTAQ 97
Query: 122 -SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
+++ P A D+L +R + D + A+V S L + + GK+ G
Sbjct: 98 EALDRP-----FNPATDDL-LRY-YQIGDYIVAKVTSFDRTHDPYLTVKGKGLGKIVTGS 150
Query: 181 LLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWIGEHVEARDK 225
++ + P V R +K ++ G ++++G NG I V+ RDK
Sbjct: 151 IVEIKPSRVPRVIGKKASMVNMLVSLTGCNIVVGQNGRIL----VQCRDK 196
>gi|52548651|gb|AAU82500.1| exosome complex RNA-binding protein 1 [uncultured archaeon
GZfos18B6]
Length = 223
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + G + A GVV+ I V AL +Y P GD+V+G++ E+ W ++I
Sbjct: 19 GEGTYVEDGNVYALKYGVVDD-RGTIKVVALSGKYMPVNGDVVVGKIAEISFPYWIVDIA 77
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
+A L S R +D NM +DL+ A+V + + L +N+
Sbjct: 78 SPYEARLHKSEFG-------RGEKIDFGNMCEYLDIDDLIVAKVMNVDVMMRIDLALKNE 130
Query: 172 KYGKLER-GQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
K++ G+L+ V P V R R L ++ + + NG IWI
Sbjct: 131 F--KMDGIGRLIEVSPTKVPRIIGRSGSMIRLLKDKCNCFIFVAKNGRIWI 179
>gi|429961738|gb|ELA41283.1| hypothetical protein VICG_01656 [Vittaforma corneae ATCC 50505]
Length = 194
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 87/193 (45%), Gaps = 29/193 (15%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD IP E G K +G + + + T+C ++ L ++ A Y P+ D+VI
Sbjct: 9 VFPGDHIP--EKG-FKCYGIVEGRAVIIGTLC----KVEDLYFIMAKTKIYVPKQYDVVI 61
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
GRV+ +K+++ +L +++ + +R R +++ EN ++C
Sbjct: 62 GRVVYASQDYYKVDLG---SCTGILPALSFANATKRNRPELEK--------ENTVLCQVE 110
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGC 210
R S GD L + + G ++ + ++ + K R +F+++ + + +
Sbjct: 111 RVSDGDA--LLSCKKEGLGAID--ECFPIESW--KIRLLYFNNVLQKLSKNRSFRIALAI 164
Query: 211 NGYIWIGEHVEAR 223
NG++WI E +
Sbjct: 165 NGFVWIDADAETK 177
>gi|320101500|ref|YP_004177092.1| ribosomal RNA-processing protein RRP4 [Desulfurococcus mucosus DSM
2162]
gi|319753852|gb|ADV65610.1| ribosomal RNA-processing protein RRP4 [Desulfurococcus mucosus DSM
2162]
Length = 238
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 60 GELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILM 119
G + + V GVV +K + V L + Y P D+VIG V V W ++I A+L
Sbjct: 41 GRVYSDVLGVVYIEDKDVNVIPLESIYYPRKDDLVIGVVNGVGITAWSVDIRAPYKAVLP 100
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERG 179
S D I+ + N+R+ D + A++ L + + GK+ G
Sbjct: 101 GS-----DVIEGFNPIMH--NLRNYLDVGDFILAKIAVFDRSRDPVLTMKGKGLGKIVDG 153
Query: 180 QLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
++ V P V R RK +++ G D+ I NGY+W+
Sbjct: 154 VVVEVKPSKVARLVGRKGSMYNILTSTSGCDITIAQNGYVWL 195
>gi|269861309|ref|XP_002650366.1| RNA-binding protein Rrp4-like protein [Enterocytozoon bieneusi
H348]
gi|220066197|gb|EED43691.1| RNA-binding protein Rrp4-like protein [Enterocytozoon bieneusi
H348]
Length = 205
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 64 ATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSS- 122
ATV G + +I +++ + +Y P+ DIV+GR+ + P +K+ I + I M +
Sbjct: 37 ATVVGKLYKIENTLFIFSKTEKYTPQINDIVLGRIYNIQPDYYKINIGYKNLHIPMYTGI 96
Query: 123 MNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLL 182
+ L I + ELN +NDL+ ++ + D L L GK+ +
Sbjct: 97 LPLSSIINIHKINKYELN------QNDLIICQIVEIKEDEIL-LNCNLPFCGKIPHAFSI 149
Query: 183 TVDPYLVKRRKQHF---------HHLEEYGIDLIIGCNGYIWIG--EHVEAR 223
++ K + HF +++ ++ +I+ NG++++ E++E +
Sbjct: 150 SI----WKIQLLHFVSIHKLITTYYIPQFPYKIILTMNGFVYLEGIEYLELK 197
>gi|161527939|ref|YP_001581765.1| exosome complex RNA-binding protein Rrp4 [Nitrosopumilus maritimus
SCM1]
gi|380876880|sp|A9A5C8.1|ECR1_NITMS RecName: Full=Probable exosome complex RNA-binding protein 1
gi|160339240|gb|ABX12327.1| KH type 1 domain protein [Nitrosopumilus maritimus SCM1]
Length = 226
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P VT G P ++ +L+G+ ++ +T G+ E + + V L +Y P+
Sbjct: 10 PGDVVTTGPFRP-EQNTVLEGN-------KIISTTIGISEIYDDSVRVIPLTGKYIPKIN 61
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA-VDELNMRSIFTENDL 150
D+VIG+V W+L+IN L D R +A DEL + DL
Sbjct: 62 DLVIGKVNSHTSLSWELDINSCYVGFLPAQ-----DVFGRDFSAHADELATK--LRTGDL 114
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHLEEYGID-- 205
V A + + + ++ GK++ G L+ + P V R +K + E D
Sbjct: 115 VAARIANFDRTRDPLVSISDRDLGKIDSGVLMEISPSKVPRLIGKKGSMIQMIEEATDAA 174
Query: 206 LIIGCNGYI 214
+ IG NG++
Sbjct: 175 VTIGQNGWV 183
>gi|385305281|gb|EIF49269.1| rrp40p [Dekkera bruxellensis AWRI1499]
Length = 236
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 76 LIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN-FTQDAILMLSSMNLPDGIQRRRT 134
+ YV A RY PE+GD VIG +I +++ +N F+ +L S R R
Sbjct: 48 VYYVEANSKRYLPESGDNVIGVIIGSFGDFYRVSLNDFSVPVVLNQFSFPNASXKNRPRL 107
Query: 135 AVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQ 194
V +L + + N V AE+ + + YGKLE G + V L R
Sbjct: 108 EVGDLIYARVESVNPNVDAEISCVD-----PTTGKAEGYGKLEGGMVFKVK--LAYARNL 160
Query: 195 HF----HHLEEY----GIDLIIGCNGYIWI 216
F H L E ++ IG NG IW+
Sbjct: 161 LFDPNAHILTELVTKCKFEIAIGVNGKIWL 190
>gi|332796514|ref|YP_004458014.1| KH type 1 domain-containing protein [Acidianus hospitalis W1]
gi|332694249|gb|AEE93716.1| KH type 1 domain protein [Acidianus hospitalis W1]
Length = 247
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 15/159 (9%)
Query: 64 ATVCGVVERINKLIYVRALR-ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAIL-MLS 121
+TV G+V+ + + L + Y P GD VIG + +V W ++I A L LS
Sbjct: 47 STVIGIVDPKDSTFEIIPLEGSHYYPRVGDTVIGLIEDVELYGWIVDIKAPYSAYLPALS 106
Query: 122 SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQL 181
+ P I ++R D V A V S + L + + G+L G++
Sbjct: 107 LLGRPVNIGE--------DLRKYLDIGDYVIARVESFDRTINPVLTVKGKGLGRLNNGKI 158
Query: 182 LTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIW 215
+ + P V R + + + L E G ++I+ NG IW
Sbjct: 159 IDIMPVKVPRVIGKNKSMYELLTSETGCEMIVAQNGRIW 197
>gi|52549120|gb|AAU82969.1| exosome complex RNA-binding protein 1 [uncultured archaeon
GZfos24D9]
Length = 223
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + G + A GV++ I V AL +Y P GD+V+G++ E+ W ++I
Sbjct: 19 GEGTYVEDGNVYALKYGVLDD-RGTIKVVALSGKYMPVNGDVVVGKIAEISFPFWIVDIA 77
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
+A L S R +D NM +DL+ A+V + + L +N+
Sbjct: 78 APYEARLHKSEFG-------RGEKIDFGNMCEYLDIDDLIVAKVMNVDVMMRIDLALKNE 130
Query: 172 KYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
+ G+L+ V P V R R L ++ + + NG IWI
Sbjct: 131 -FKMDGVGRLIEVSPTKVPRIIGRSGSMIRLLKDKCNCFIFVAKNGRIWI 179
>gi|408404986|ref|YP_006862969.1| exosome complex RNA-binding protein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365582|gb|AFU59312.1| exosome complex RNA-binding protein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 263
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 62 LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLS 121
L AT G+ E + V L Y P D+VIG+VI+ W+++IN
Sbjct: 30 LIATRIGIAETGRDGVKVIPLSGVYIPRVNDLVIGKVIDHSSLSWEVDIN-------SCF 82
Query: 122 SMNLP-DGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
S +LP + R + +M F D++ A + + L +++ GK+ RG+
Sbjct: 83 SAHLPAQDVFGRDFSPARDDMSRHFAIGDMITARIMAFDRTRDPMLTVQDRDLGKIPRGE 142
Query: 181 LLTVD----PYLVKRRKQHFHHLEEYG-IDLIIGCNGYIWI 216
+L + P L+ +R +E+ ++IG NG + +
Sbjct: 143 VLKISATRVPRLIGKRGSMIQTIEQATQTRVLIGQNGIVVV 183
>gi|290977236|ref|XP_002671344.1| predicted protein [Naegleria gruberi]
gi|284084912|gb|EFC38600.1| predicted protein [Naegleria gruberi]
Length = 253
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 24/203 (11%)
Query: 52 GHGTSDQKGELAATVCGVVERINK-LIYVRALRARYKPETGDIVIGRVIEVVP-KRWKLE 109
GHG + + AT G++ I +V + RY P GD+VIG V + VP +++ ++
Sbjct: 38 GHGLLQLESNIIATKAGLLRFIPPNRYFVENNQHRYVPMVGDMVIGVVKDKVPVEQYSVD 97
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNM---RSIFTENDL-VCAEVRSSQGDGSLQ 165
I F + +L + +R R + ++ R DL + SS G
Sbjct: 98 I-FAHQGLALLPFIGFDGATRRNRPDLGPGSLVYGRVTLANKDLDLEITCESSPGMKKKD 156
Query: 166 LQARNQKYGKLERG-----------QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYI 214
+G+L+ G +LL + YL+K +H ++ IG NG +
Sbjct: 157 WSTGKSVFGELKGGYVTECSLGMARKLLDPNCYLLKLLSEHV------SFEIAIGLNGRV 210
Query: 215 WIGEHVEARDKMVVDQGSNSEQL 237
WI ++ + NSE L
Sbjct: 211 WINSEAPNDIVLICNAIQNSEHL 233
>gi|190344709|gb|EDK36442.2| hypothetical protein PGUG_00540 [Meyerozyma guilliermondii ATCC
6260]
Length = 249
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 34 SCVTVGDTIPVYEDGILKGHGTSDQK--GELAATVCGVV-ERINK-----LIYVRALRAR 85
S + GD IP E G G Q + G+V ++INK L+YV + R
Sbjct: 2 SVIIPGDHIPPNEVKTTIGPGFYRQPITDNVVPVSAGIVHDKINKQGTNRLLYVDSNSKR 61
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIF 145
Y P+ D VIG V V+ + +K+ + ++ LS M P+ ++ R + N ++++
Sbjct: 62 YIPQVNDFVIGIVTGVIGEAYKVSLQGFSSSV-SLSMMAFPNANKKNRPNLK--NGQAVY 118
Query: 146 TENDLVCAEVRSSQGDGSLQLQARNQKYGKL-ERGQLLTVDPYLVKRRKQHFHH----LE 200
+E+ S + + +G L E G + V+ L R F H LE
Sbjct: 119 ARVTKAMSEIESEI--ECMDSSGKEGGFGVLSESGLIFEVN--LHYARDLLFSHNSPILE 174
Query: 201 EYG----IDLIIGCNGYIWI 216
+ ++ IG NG IWI
Sbjct: 175 KLSSKCKFEIAIGINGKIWI 194
>gi|195118728|ref|XP_002003888.1| GI18151 [Drosophila mojavensis]
gi|193914463|gb|EDW13330.1| GI18151 [Drosophila mojavensis]
Length = 214
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 39 GDTIPVYEDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGD 92
GD + ED I+ G GT +Q G + A+ G++ E K V + + P TGD
Sbjct: 24 GDRLCRVEDNIVVGQGTYEQGGYIYASKSGIINIDESNEKCQIVSVHKPGFHLTIPATGD 83
Query: 93 IVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVC 152
+V RV+ PK K I ++ +L S L R T D +++ F D++
Sbjct: 84 VVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETDKDRVDIYKSFKPGDVIL 143
Query: 153 AEVRSSQGDGSLQLQARNQKYG 174
A V +Q + S L + G
Sbjct: 144 ARV-VNQMEQSFMLSTAEAELG 164
>gi|119114696|ref|XP_319438.3| AGAP010247-PA [Anopheles gambiae str. PEST]
gi|116118540|gb|EAA43646.3| AGAP010247-PA [Anopheles gambiae str. PEST]
Length = 238
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 26/181 (14%)
Query: 49 ILKGHGTSDQKGELAATVCGVVE-RINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWK 107
++ G G +K + A+ CG+++ + +V A + RY P G++VIG V+ ++
Sbjct: 29 VILGPGIRVEKETVRASKCGMLKMKPPNTFWVDAYQRRYVPNRGELVIGVVMAKTGDTFR 88
Query: 108 LEINFTQDAILMLSSMNLPDGIQRRRTAV---DELNMRSIFT----ENDLVCAEVRSSQG 160
L+I ++ A LS M ++ R V D + R + E +LVC + +G
Sbjct: 89 LDIGGSETA--SLSYMAFEGATKKNRPDVNVGDIVYARLLIAHPDVEPELVCVDSHGKKG 146
Query: 161 DGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHF--HHLEEYGIDLIIGCNGYIW 215
K G L G +++ LV++ K +F +E ++ G NG IW
Sbjct: 147 -----------KLGVLHDGFMISCSLNLVRKILNPKSNFLSQLAKELPFEIAAGMNGRIW 195
Query: 216 I 216
I
Sbjct: 196 I 196
>gi|52549529|gb|AAU83378.1| RNA-binding protein Rrp4 [uncultured archaeon GZfos27G5]
Length = 228
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 14/171 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT ++G++ A+ G+V + I V L +Y P GD++IG++ E+ W +++
Sbjct: 19 GEGTYVEEGKVYASQYGIV-NVRGEIKVVPLSGKYIPSNGDVIIGKITEISFPFWIVDLA 77
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
+A L +S+++ GI R + ++ NM +DLV +V ++++ Q
Sbjct: 78 SPYEARLHVSALS---GIAREK--IEFGNMSEYLNVDDLVVVKVMDVN--VLMKIELALQ 130
Query: 172 KYGKLERGQLL-----TVDPYLVKRRKQHFHHLEEY-GIDLIIGCNGYIWI 216
+ +L RG L T P ++ R L+E + I NG IWI
Sbjct: 131 EDFELRRGGRLIEIPHTKVPRVIGRSGSMITMLKEKCNCFIFIAKNGRIWI 181
>gi|384245743|gb|EIE19236.1| exonuclease component of the exosome [Coccomyxa subellipsoidea
C-169]
Length = 227
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAV 136
++V + RY TGD V+G V+E + + ++I A+L + S +G RR
Sbjct: 49 LWVEGRQKRYISSTGDDVVGVVLERHAENFVVDIGAPFPAVLNILSF---EGATRRN--- 102
Query: 137 DELNMRSIFTENDLVCAEVRSSQGDGSLQLQ-----ARNQKYGKLERGQLLTVDPYLVKR 191
R E DLV A V + D +L + YG L+ G L++ L +R
Sbjct: 103 -----RPKLAEGDLVYARVVLAHRDIDTELSCTDTGGKASGYGPLKEGHLISCSTALARR 157
Query: 192 --RKQHFHHLEEYG----IDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDK 243
LE G ++ IG NG +WI ++ + + SE L A K
Sbjct: 158 LLASPTAPVLEALGNSLQFEIAIGQNGRVWIDAAKATTVILIANAITRSEYLSADQSK 215
>gi|195384852|ref|XP_002051126.1| GJ14547 [Drosophila virilis]
gi|194147583|gb|EDW63281.1| GJ14547 [Drosophila virilis]
Length = 214
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGDIVIGRVI 99
ED I+ G GT +Q G + A G+V E K V + + P TGD+V RV+
Sbjct: 31 EDNIIVGQGTYEQGGYIYACKSGIVHIDETTEKCQIVSVHKPGFHLTIPATGDVVTARVL 90
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
PK K I + +L S L R T D +++ F D++ A V +Q
Sbjct: 91 VTTPKFAKCAIFCVGNVLLESSYRGLLRKEDVRETEKDRVDIYKSFKPGDVILARV-VNQ 149
Query: 160 GDGSLQLQARNQKYG 174
+ S L + G
Sbjct: 150 MEQSFMLSTAEAELG 164
>gi|156543108|ref|XP_001605422.1| PREDICTED: exosome complex component RRP40-like [Nasonia
vitripennis]
Length = 236
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 22/191 (11%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++ G G + A G++++ + YV + + RY P G+ V+G V + +++
Sbjct: 27 VILGPGLRTDGETVYACKAGILKKRISIYYVDSYQKRYIPSQGENVVGVVTQKAGDIFRV 86
Query: 109 EINFTQDAILML------SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDG 162
+I + A L S N PD +Q +L + S E++LVC V S G
Sbjct: 87 DIGANEPAALSYLGFEGASKRNRPD-VQVGDIVYAKLIVASKDMESELVC--VDSFGKKG 143
Query: 163 SLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWIG 217
L + + N G LLT LV++ + L EE ++ +G NG IWI
Sbjct: 144 KLGVLSPN--------GMLLTCSLSLVRKILKANCPLLRLLSEELKYEIAVGMNGKIWIK 195
Query: 218 EHVEARDKMVV 228
D + V
Sbjct: 196 SKSSVEDTIAV 206
>gi|296243061|ref|YP_003650548.1| ribosomal RNA-processing protein RRP4 [Thermosphaera aggregans DSM
11486]
gi|380876881|sp|D5U396.1|ECR1_THEAM RecName: Full=Probable exosome complex RNA-binding protein 1
gi|296095645|gb|ADG91596.1| ribosomal RNA-processing protein RRP4 [Thermosphaera aggregans DSM
11486]
Length = 247
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
++ + + GVV + I V L Y P D+VIG V V W L+I +L
Sbjct: 45 KIISDLVGVVNVSGEDIQVIPLEGVYIPRKDDLVIGIVENVGVTAWTLDIRSPYPGVLNA 104
Query: 121 SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
S + I+ + N+R+ D V + + + + GK+ G
Sbjct: 105 SEV-----IEGFNPLIH--NLRNYLDTGDFVIGRIALFDRTRDPVITVKGKGLGKITEGV 157
Query: 181 LLTVDPY----LVKRRKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEARDKMVV 228
++ V P L+ +R ++ L G ++ I NG++W+ H E R K+++
Sbjct: 158 VVDVKPSKIPRLIGKRGSMYNLLTSMSGCEITIAQNGFVWLKCHDENRAKVLI 210
>gi|288930696|ref|YP_003434756.1| RNA binding S1 domain protein [Ferroglobus placidus DSM 10642]
gi|288892944|gb|ADC64481.1| RNA binding S1 domain protein [Ferroglobus placidus DSM 10642]
Length = 226
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
GHGT + G++ A G++++ + V LR +Y P GD+V+G V EV W +EIN
Sbjct: 19 GHGTYVENGKVYAKFLGLLDKTETSVRVIPLRGKYIPSVGDVVVGVVKEVTVNGWVVEIN 78
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + P+ ++ + D++ A++ + L +++
Sbjct: 79 SPYMA--FLPAQENPEMKPNKKP-------NEVLDIGDIIVAKIINIDPKMKATLTMKDK 129
Query: 172 KYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
+ G+++ ++P V R +K L E G+++I+G NG IW+
Sbjct: 130 MCRPIRFGRIVAINPARVPRVIGKKGSMIKLFKNELGVNVIVGQNGLIWL 179
>gi|238879390|gb|EEQ43028.1| exosome complex exonuclease RRP40 [Candida albicans WO-1]
Length = 270
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 62/257 (24%)
Query: 33 NSCVTVGDTIPVYED----------GILKGHGTSDQKGELAATVCGVV--ERI----NKL 76
++ + GD +P+ ED GI K T EL + G++ ER +L
Sbjct: 3 DTIILPGDKLPIDEDISTVKTTIGPGIYKKPKTQ----ELIPSAAGILHYERAKSSSQQL 58
Query: 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAV 136
IY+ + RY P T D VIG + + + +K+ + +L LS P+ ++ R +
Sbjct: 59 IYIESNSKRYIPHTNDYVIGIITGAIGESYKVSLQSNSTPVL-LSFWAFPNASKKNRPNL 117
Query: 137 DELNMRSIFT---------ENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY 187
N ++++ E +L C + S + G +G L+ + D +
Sbjct: 118 K--NGQAVYARVSQDIPEIETELECIDPTSGKEGG----------FGVLDESGYI-FDVH 164
Query: 188 LVKRRKQHFH----HLEEYG----IDLIIGCNGYIWI----GEHVEARDKMVVDQGSNSE 235
L R+ F+ LE ++ IG NG IWI G EA D GSN+
Sbjct: 165 LNFARELLFNPKTIFLETLATRCQFEIAIGINGKIWIKCGNGVKKEAND------GSNNN 218
Query: 236 QLIAKCDKNSMDLDEQD 252
Q + D+ +D+ E++
Sbjct: 219 QDQGE-DQEMIDVSEEN 234
>gi|52352384|gb|AAU43673.1| conserved hypothetical protein [uncultured archaeon GZfos26D8]
Length = 225
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT ++G++ A+ G+V + I V L +Y P GD+VIGR+ E+ W +++
Sbjct: 19 GEGTYVEEGKVYASQYGIVN-VRGEIKVVPLSGKYMPSKGDVVIGRITEISFPFWIVDLA 77
Query: 112 FTQDAILMLSSMNLPDGIQR 131
+A L +S+++ GI R
Sbjct: 78 SPYEARLHVSALS---GIAR 94
>gi|68475021|ref|XP_718396.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|68475558|ref|XP_718127.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|46439883|gb|EAK99195.1| likely exosome component Rrp40p [Candida albicans SC5314]
gi|46440161|gb|EAK99470.1| likely exosome component Rrp40p [Candida albicans SC5314]
Length = 270
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 62/257 (24%)
Query: 33 NSCVTVGDTIPVYED----------GILKGHGTSDQKGELAATVCGVV--ERI----NKL 76
++ + GD +P+ ED GI K T EL + G++ ER +L
Sbjct: 3 DTIILPGDKLPIDEDIFTVKTTIGPGIYKKPKTQ----ELIPSAAGILHYERAKSSSQQL 58
Query: 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAV 136
IY+ + RY P T D VIG + + + +K+ + +L LS P+ ++ R +
Sbjct: 59 IYIESNSKRYIPHTNDYVIGIITGAIGESYKVSLQSNSTPVL-LSFWAFPNASKKNRPNL 117
Query: 137 DELNMRSIFT---------ENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY 187
N ++++ E +L C + S + G +G L+ + D +
Sbjct: 118 K--NGQAVYARVSQDIPEIETELECIDPTSGKEGG----------FGVLDESGYI-FDVH 164
Query: 188 LVKRRKQHFH----HLEEYG----IDLIIGCNGYIWI----GEHVEARDKMVVDQGSNSE 235
L R+ F+ LE ++ IG NG IWI G EA D GSN+
Sbjct: 165 LNFARELLFNPKTIFLETLATRCQFEIAIGINGKIWIKCGNGVKKEAND------GSNNN 218
Query: 236 QLIAKCDKNSMDLDEQD 252
Q + D+ +D+ E++
Sbjct: 219 QDQGE-DQEMIDVSEEN 234
>gi|367008036|ref|XP_003688747.1| exosome complex component RRP40 [Tetrapisispora phaffii CBS 4417]
gi|357527057|emb|CCE66313.1| hypothetical protein TPHA_0P01550 [Tetrapisispora phaffii CBS 4417]
Length = 237
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 25/169 (14%)
Query: 62 LAATVCGVVE-RINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEI-NFTQDAILM 119
+AA + VVE + + +YV RY P GD VIG + R+K+ + NF+ +
Sbjct: 37 VAAGMLNVVETKRGQTVYVDYNTKRYIPAVGDFVIGTITGAYGDRYKVSLSNFSNS--VS 94
Query: 120 LSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQK------Y 173
LS M P+ ++ R + DL A + S++ + +++ + +
Sbjct: 95 LSYMAFPNASKKNRPTLK---------VGDLAYARICSAEKELEAEIECMDSSTGVDSGF 145
Query: 174 GKLERGQLLTVDPYLVKR--RKQHFHHLE----EYGIDLIIGCNGYIWI 216
G LE G ++ +R F L+ ++ IG NG +W+
Sbjct: 146 GSLENGMVIETKLPFARRLLFDNDFPLLQLLAKHTKFEIAIGLNGVVWV 194
>gi|390939122|ref|YP_006402860.1| Exosome complex RNA-binding protein Rrp4 [Desulfurococcus
fermentans DSM 16532]
gi|390192229|gb|AFL67285.1| Exosome complex RNA-binding protein Rrp4 [Desulfurococcus
fermentans DSM 16532]
Length = 239
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 12/161 (7%)
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
++ + V G+V +K I V L + Y P D VIG V + W ++I AIL
Sbjct: 43 KVYSDVLGIVYIEDKDINVIPLESVYYPRKDDTVIGIVDSIGVTSWSIDIRAPYKAILPG 102
Query: 121 SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
S D I+ N+R+ DL+ A++ L + + GK+ G
Sbjct: 103 S-----DVIEGFNPITH--NLRNYLDTGDLILAKIAVFDRTRDPVLTTKGKGLGKILEGV 155
Query: 181 LLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
++ V P V R +K ++L + G D+ I NGYI +
Sbjct: 156 VVEVKPSKVARLVGKKGSMYNLLSSKSGCDITIAQNGYILL 196
>gi|146302861|ref|YP_001190177.1| exosome complex RNA-binding protein Rrp4 [Metallosphaera sedula DSM
5348]
gi|145701111|gb|ABP94253.1| ribosomal RNA-processing protein RRP4 [Metallosphaera sedula DSM
5348]
Length = 247
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 58 QKGELAATVCGVVERINKLIYVRALR-ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDA 116
Q + A+V GVVE + + V L + Y P GD VI V +V W +I A
Sbjct: 37 QGNKYYASVIGVVEVKDSIFEVIPLEGSHYYPRIGDTVIALVEDVELYGWTTDIKAPYSA 96
Query: 117 ILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKL 176
L SS+ R V E ++R D V A+V S L + + G++
Sbjct: 97 YLPASSL------LGRPANVGE-DLRRYIDVGDYVIAKVESFDRTSDPVLSVKGKGLGRV 149
Query: 177 ERGQLLTVDPYLVKR----RKQHFHHLE-EYGIDLIIGCNG 212
G ++ + P V R K L E G D+++ NG
Sbjct: 150 SSGTVIDILPVKVPRVVGKGKSMLETLSTETGCDILVAQNG 190
>gi|195030438|ref|XP_001988075.1| GH10967 [Drosophila grimshawi]
gi|193904075|gb|EDW02942.1| GH10967 [Drosophila grimshawi]
Length = 214
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGDIVIGRVI 99
ED ++ G GT +Q G + A G+V + K V + + P TGD+V RV+
Sbjct: 31 EDNVIVGEGTYEQGGYIYACKSGIVNIDDSTEKCQIVSVHKPGFHLTIPATGDVVTARVL 90
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
PK K I ++ +L S L R T D +++ F D++ A V +Q
Sbjct: 91 VTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRVDIYKSFKPGDIILARV-INQ 149
Query: 160 GDGSLQLQARNQKYG 174
+ S L + G
Sbjct: 150 MEQSFTLSTAEAELG 164
>gi|330846337|ref|XP_003294994.1| hypothetical protein DICPUDRAFT_160096 [Dictyostelium purpureum]
gi|325074419|gb|EGC28480.1| hypothetical protein DICPUDRAFT_160096 [Dictyostelium purpureum]
Length = 233
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 35/183 (19%)
Query: 52 GHGTSDQKGELAATVCGVV--ERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
G G K + AT GV+ + +K ++ + RY P+ D+VIG ++E + +K++
Sbjct: 26 GPGLLQSKETVVATKAGVLRYSKFHKFYWIENEQKRYVPQVEDMVIGTIVEKHAESFKVD 85
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
I + +A+L S +G + + + +LV A V + D ++
Sbjct: 86 IGSSCNALLSAYSF---EGATKSN--------KPLLNIGNLVYARVTVANRDMEPEIVCL 134
Query: 170 NQK-----YGKLERG-----------QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
+QK +G+L G LL+ D Y+++ +H + ++ +G NG
Sbjct: 135 SQKQKAEGFGQLIGGYMLNCSLGLSHYLLSEDCYILQVLGKHIPY------EIAVGVNGR 188
Query: 214 IWI 216
+W+
Sbjct: 189 VWV 191
>gi|302348937|ref|YP_003816575.1| exosome complex RNA-binding protein 1 [Acidilobus saccharovorans
345-15]
gi|302329349|gb|ADL19544.1| Probable exosome complex RNA-binding protein 1 [Acidilobus
saccharovorans 345-15]
Length = 234
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 57 DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDA 116
D GE A V G+++ ++ L+ Y P GDIVIG V W L+IN A
Sbjct: 31 DYNGEKRAAVAGLLDIKDEGASFVPLKGFYFPNEGDIVIGLVTSHAAANWFLDINSPYQA 90
Query: 117 ILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKL 176
L + G+++ D + + D V A + + S L +++ G++
Sbjct: 91 TLSIQDFF---GVKQGGQVPD--DPFTYLKIGDYVKARIVAFDRVRSPALTVQDKGLGRI 145
Query: 177 ERGQLLTVDPYLVKRRKQHFHHLEEY-----GIDLIIGCNGYIWI 216
G ++TV P V R + E G D+ + NG + I
Sbjct: 146 TEGTVVTVRPVKVPRIIGKKGSMIETIKSASGCDVFVAVNGRVHI 190
>gi|14601413|ref|NP_147950.1| exosome complex RNA-binding protein Rrp4 [Aeropyrum pernix K1]
gi|29337016|sp|Q9YC02.1|ECR1_AERPE RecName: Full=Probable exosome complex RNA-binding protein 1
gi|160286342|pdb|2Z0S|A Chain A, Crystal Structure Of Putative Exosome Complex Rna-Binding
Protein
gi|5105132|dbj|BAA80446.1| exosome complex RNA-binding protein Rrp4 homologue [Aeropyrum
pernix K1]
Length = 235
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 57 DQKGELAATVCGVVERINK---LIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFT 113
D KG ATV G++ +V+ L+ Y P+ GD+VIG + V W ++IN
Sbjct: 31 DYKGVKRATVVGLLREKGDGGGRAFVK-LKEIYVPQAGDVVIGLIQSVGIMNWFVDINSP 89
Query: 114 QDAILMLSSMNLPDGIQRR-RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQK 172
A+L ++ D + R AVD +M+S+ D + A+V + S L + +
Sbjct: 90 YVAVL-----SVQDFLGRPFNPAVD--DMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGEG 142
Query: 173 YGKLERGQLLTVDPYLVKR 191
G++ RG+++ + P V R
Sbjct: 143 LGRIVRGKIVEISPAKVPR 161
>gi|159485988|ref|XP_001701026.1| 3'-5' exonuclease component of the exosome [Chlamydomonas
reinhardtii]
gi|158281525|gb|EDP07280.1| 3'-5' exonuclease component of the exosome [Chlamydomonas
reinhardtii]
Length = 231
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 98/249 (39%), Gaps = 50/249 (20%)
Query: 44 VYEDGILK-GHGTSDQKGELAATVCGVVE--RINKLIYVRALRARYKPETGDIVIGRVIE 100
V E G L+ G + G + + GV++ R +L ++ + RY P GD+V+G + +
Sbjct: 19 VPEQGTLRLSAGLTTHDGAVTSLKGGVLKSTRTGQL-FLEGRQKRYIPAEGDVVVGVISD 77
Query: 101 VVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG 160
+ + ++I +A+L S +G RR R DLV A V ++
Sbjct: 78 KHSENFTVDIGGPFNAVLPQLSF---EGATRRN--------RPNLHPGDLVYARVVTAHR 126
Query: 161 DGSLQLQ-----ARNQKYGKLERGQLLTVDPYLVKR--RKQHFHHLEEYG----IDLIIG 209
D L R +G L+ G +L+ L ++ LE G +L +G
Sbjct: 127 DTDPVLSCMDSAGRASGFGHLKEGMVLSCSSALARQLLGSPTAPVLEALGSGLQFELAVG 186
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIAN 269
NG +W+ A +V + S SE TP + R +
Sbjct: 187 LNGRVWLSAPTAATCVVVANAISESEFR------------------TPAQVRTMVA---- 224
Query: 270 AIRVLSRLG 278
RVLSRLG
Sbjct: 225 --RVLSRLG 231
>gi|303390811|ref|XP_003073636.1| S1-like RNA-binding domain-containing protein [Encephalitozoon
intestinalis ATCC 50506]
gi|303302783|gb|ADM12276.1| S1-like RNA-binding domain-containing protein [Encephalitozoon
intestinalis ATCC 50506]
Length = 195
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 29/186 (15%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD +P L HGT AT+ G + + + ++V + RY P DIVI
Sbjct: 8 VLPGDDVPSNGSKSLGIHGTK-------ATIVGTLCKTSNHLFVVSKTNRYHPCIDDIVI 60
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
G+ I ++++ A L S++ + +R + +++ + L+C
Sbjct: 61 GKAILTSQDMHRIDLGGVVGA---LPSLSFTNATKRNKPEINK--------GDYLLCKIA 109
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGC 210
R+ L + +GKL G +L ++P+ K R + ++Y + +G
Sbjct: 110 RTGT---EPLLTCVGEGFGKLS-GVVLPLEPW--KVRLLYLSTTLATIGKKYRFRIALGL 163
Query: 211 NGYIWI 216
NG++WI
Sbjct: 164 NGFVWI 169
>gi|24583644|ref|NP_609492.1| Csl4 [Drosophila melanogaster]
gi|7297825|gb|AAF53074.1| Csl4 [Drosophila melanogaster]
gi|20152101|gb|AAM11410.1| RE36848p [Drosophila melanogaster]
gi|220948428|gb|ACL86757.1| Csl4-PA [synthetic construct]
gi|220957608|gb|ACL91347.1| Csl4-PA [synthetic construct]
Length = 204
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGDIVIGRVI 99
ED I+ G GT +Q G + A+ G+V + +K V + + P TGD+V RV+
Sbjct: 21 EDSIVLGIGTYEQNGYIYASKSGIVNIEDSGDKCQVVSVHKPGFHLTIPATGDVVTARVL 80
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
PK K I ++ +L S L R T D +++ F D++ A V +
Sbjct: 81 VTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQL 140
Query: 160 GDGSLQLQARNQ 171
L A N+
Sbjct: 141 EQSFLLTTAENE 152
>gi|326428875|gb|EGD74445.1| hypothetical protein PTSG_05810 [Salpingoeca sp. ATCC 50818]
Length = 264
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 22/204 (10%)
Query: 48 GILKGHGTSD-QKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRW 106
G+L G +S L V G + R +++V + R P GD VIG + + +
Sbjct: 57 GVLDGDASSSGNTAMLQVVVPGDLRRKGNMVWVDGVHKRALPAEGDYVIGIITGTPGENY 116
Query: 107 KLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSI-----FTENDLVCAEVRSSQGD 161
++I + +A L + R R V +L + + E +L C
Sbjct: 117 NVDIGGSCNATLHNLAFEGATKRNRPRLKVGDLVYARVQLMHKYMEPELTC--------- 167
Query: 162 GSLQLQARNQKYGKLERGQL----LTVDPYLVKRRKQHFHHL-EEYGIDLIIGCNGYIWI 216
+ + Q G LE G L L + L+ R H L E ++ IG NG +W
Sbjct: 168 --VHASGKAQGMGLLEGGFLFEISLGLSRTLLSRGCAVLHALGAELPFEITIGRNGRVWA 225
Query: 217 GEHVEARDKMVVDQGSNSEQLIAK 240
+VV+ SE+L AK
Sbjct: 226 KAARACETMLVVNAIRASERLSAK 249
>gi|198474701|ref|XP_001356791.2| GA19469 [Drosophila pseudoobscura pseudoobscura]
gi|198138507|gb|EAL33857.2| GA19469 [Drosophila pseudoobscura pseudoobscura]
Length = 205
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 26 LSSKSNPNSCVTV-GDTIPVYEDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRA 81
+SS+ + N+ V + G+ + ED ++ G GT +Q G + A+ GVV E V
Sbjct: 1 MSSEGDENTVVCLPGERLCRVEDNVVLGIGTYEQNGYIYASKSGVVNIEESGENCQVVSV 60
Query: 82 LRARYK---PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE 138
+ + P TGD+V RV+ PK K I ++ +L S L R T D
Sbjct: 61 HKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETEKDR 120
Query: 139 LNMRSIFTENDLVCAEV 155
+++ F D++ A V
Sbjct: 121 VDIYKSFKPGDVILARV 137
>gi|195148326|ref|XP_002015125.1| GL18587 [Drosophila persimilis]
gi|194107078|gb|EDW29121.1| GL18587 [Drosophila persimilis]
Length = 205
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 26 LSSKSNPNSCVTV-GDTIPVYEDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRA 81
+SS+ + N+ V + G+ + ED ++ G GT +Q G + A+ GVV E V
Sbjct: 1 MSSEGDENTVVCLPGERLCRVEDNVVLGIGTYEQNGYIYASKSGVVNIEESGENCQVVSV 60
Query: 82 LRARYK---PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE 138
+ + P TGD+V RV+ PK K I ++ +L S L R T D
Sbjct: 61 HKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETEKDR 120
Query: 139 LNMRSIFTENDLVCAEV 155
+++ F D++ A V
Sbjct: 121 VDIYKSFKPGDVILARV 137
>gi|194861810|ref|XP_001969861.1| GG10323 [Drosophila erecta]
gi|190661728|gb|EDV58920.1| GG10323 [Drosophila erecta]
Length = 204
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGDIVIGRVI 99
ED I+ G GT +Q G + A+ G+V E V + + P TGD+V RV+
Sbjct: 21 EDNIVLGIGTYEQNGYIYASKSGIVHIEESGENCQVVSVHKPGFHLTIPATGDVVTARVL 80
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
PK K I ++ +L S L R T D +++ F D++ A V +
Sbjct: 81 VTTPKFVKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQM 140
Query: 160 GDGSLQLQARNQ 171
+ L A N+
Sbjct: 141 ENSFLLTTAENE 152
>gi|302786082|ref|XP_002974812.1| hypothetical protein SELMODRAFT_102189 [Selaginella moellendorffii]
gi|300157707|gb|EFJ24332.1| hypothetical protein SELMODRAFT_102189 [Selaginella moellendorffii]
Length = 223
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 12/194 (6%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G G S + A G + ++V + RY P D VIG VI+ + + +++N
Sbjct: 21 GSGLSQDADRVVAIKAGRLNHAKSKLWVEGSQKRYIPSAEDSVIGIVIDRRAEEFLVDLN 80
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
+L + S +G R+ + L R++ +V A S L +
Sbjct: 81 APVLGLLPILSF---EGATRKN--IPNLKARAV-VYGRVVKAHRDISPALSCLDASGKGS 134
Query: 172 KYGKLERGQLLTVDPYLVKR--RKQHFHHLEEYG----IDLIIGCNGYIWIGEHVEARDK 225
YG L+ G L L + + LE G ++ +G NG +W+ A
Sbjct: 135 GYGPLKEGYLFECSTGLARSLLGTPTYPVLEALGKSLAFEIAVGVNGRVWVKSDAPATTV 194
Query: 226 MVVDQGSNSEQLIA 239
+V + NSE L A
Sbjct: 195 LVSNAIINSECLSA 208
>gi|194761250|ref|XP_001962842.1| GF14226 [Drosophila ananassae]
gi|190616539|gb|EDV32063.1| GF14226 [Drosophila ananassae]
Length = 202
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGDIVIGRVI 99
ED I+ G GT +Q G + A+ G+V E V + + P TGDIV RV+
Sbjct: 21 EDNIVLGVGTYEQNGYIYASKSGIVNIEESGENCQVVNVHKPGFHLTIPTTGDIVTARVL 80
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
PK K I ++ +L S L R T D +++ F D++ A V +
Sbjct: 81 VTTPKFVKCAIFCVRNVLLENSYRGLLRKEDVRETEKDRVDIYKSFKPGDVILARVINQM 140
Query: 160 GDGSLQLQARNQ 171
L A N+
Sbjct: 141 EQSFLLTTAENE 152
>gi|297527573|ref|YP_003669597.1| K-like, type 1, subgroup [Staphylothermus hellenicus DSM 12710]
gi|297256489|gb|ADI32698.1| K-like, type 1, subgroup [Staphylothermus hellenicus DSM 12710]
Length = 240
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 62 LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLS 121
+ + V G+V +K + V L Y P+ D+VIG V V W ++I AIL S
Sbjct: 45 IYSDVLGIVSITDKTVSVIPLEGVYFPKKDDLVIGLVTGVGITNWIIDIRAPYKAILNGS 104
Query: 122 SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQL 181
+ I+ + N+R + + A++ L + + GK+ G +
Sbjct: 105 EV-----IEGFNPIIH--NLRDYLDIGEYILAKISVFDRTRDPILTIKGKGLGKITEGTV 157
Query: 182 LTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIW 215
+ V P V R +K +L + G ++++ NG IW
Sbjct: 158 IEVKPSRVPRIIGKKGSMLNLLTSKTGCNIVVAQNGMIW 196
>gi|307105285|gb|EFN53535.1| hypothetical protein CHLNCDRAFT_59733 [Chlorella variabilis]
Length = 257
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 29/210 (13%)
Query: 46 EDGILKGHGTSDQKGEL-AATVCGVVERINK--LIYVRALRARYKPETGDIVIGRVIEVV 102
E G+++ G Q GEL AT GV+ R K ++V A + RY P D+VIGR+ +
Sbjct: 25 ETGVVRIGGGVQQDGELLVATKAGVLRREAKGGKLWVEARQKRYTPSPEDVVIGRITDRH 84
Query: 103 PKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD- 161
+ + ++I A+L + + +G +R R DLV V S+ D
Sbjct: 85 SENYGVDIGGPFRALLPVLAF---EGATKRN--------RPHLQVGDLVYGRVESAHRDL 133
Query: 162 ----GSLQLQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEYG----IDLIIG 209
+ + + +L+ G ++ V L+ R L G +L +G
Sbjct: 134 EPVLSCMDGAGKASGFAQLKGGMVIEVSTTHARSLLSRPPAAL--LSALGRSLQFELAVG 191
Query: 210 CNGYIWIGEHVEARDKMVVDQGSNSEQLIA 239
NG +W+ + +V + +SE L A
Sbjct: 192 LNGRVWLDAPSSSTVILVANAIQSSEFLTA 221
>gi|305663456|ref|YP_003859744.1| RNA-binding S1 domain-containing protein [Ignisphaera aggregans
DSM 17230]
gi|304378025|gb|ADM27864.1| RNA-binding S1 domain-containing protein [Ignisphaera aggregans
DSM 17230]
Length = 187
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER--INKLIYVRALRARYKPE 89
PNS V G+ + V E+ + GT ++G + A + G V+ IN+ IY++++++ P+
Sbjct: 5 PNSIVLPGEKLCV-EEEYMPSIGTYSEEGIVRAAIIGRVQYDIINRRIYIKSIKSPVIPK 63
Query: 90 TGDIVIGRV 98
GDIVIG V
Sbjct: 64 AGDIVIGVV 72
>gi|374724590|gb|EHR76670.1| exosome complex RNA-binding protein Rrp4 [uncultured marine group
II euryarchaeote]
Length = 243
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 22/192 (11%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G G Q + AT G + N + V + + Y P +GD+++ V EV W + IN
Sbjct: 40 GSGAIAQNDTIIATRLGWTKEFNNTVSVDPINSAYMPRSGDLIVAVVAEVRNNLWFMNIN 99
Query: 112 FTQDAILMLS--SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
+L +S + G R+ + D+V A V+ ++ L +
Sbjct: 100 GPFQGLLPMSLAPWKVEFGAARQHMGI-----------GDVVLARVQEVDECHNVVLTMK 148
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGID-----LIIGCNGYIWIGEHVE--- 221
+L +G ++ V + R + + + D +IIG NG +WI + E
Sbjct: 149 GVGLRRLNQGTIVNVPINHIDRLRGEGNATVQRLRDAADSRIIIGENGRVWIDGNAEGTA 208
Query: 222 -ARDKMVVDQGS 232
AR+ + + Q S
Sbjct: 209 WAREAVALTQAS 220
>gi|260947378|ref|XP_002617986.1| hypothetical protein CLUG_01445 [Clavispora lusitaniae ATCC 42720]
gi|238847858|gb|EEQ37322.1| hypothetical protein CLUG_01445 [Clavispora lusitaniae ATCC 42720]
Length = 288
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 24 ESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALR 83
+SL+S+ + +T+G I Y K H + + + + +KL+Y+ +
Sbjct: 26 DSLASEVEGQAEITIGPGIYKYP----KSHQIIPSQAGILKSTSASKKSNDKLLYIESNS 81
Query: 84 ARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
RY P+ D+VIG + V +K+ + A + LS M P+ ++ R
Sbjct: 82 KRYIPQVNDLVIGYITGVYGDFFKVSLQ-NHSAPVQLSMMAFPNATKKNR 130
>gi|401828613|ref|XP_003888020.1| RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999028|gb|AFM99039.1| RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 190
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 29/186 (15%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD +P L HG A V G + R +K ++V + RY P DIVI
Sbjct: 8 VLPGDEVPSNNSKSLGIHGNK-------AMVVGTLCRASKHLFVMSRTNRYHPCIDDIVI 60
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
G+ + ++++ + +L S++ + +R + + ++ D + ++
Sbjct: 61 GKAMVTSQDIHRIDLG---GVVGILPSLSFTNATKRNKPEI---------SKGDYLLCKI 108
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGC 210
S G L L + +GKL G +L +DP+ K R + + ++Y + +G
Sbjct: 109 -SRMGIEPL-LTCVGEGFGKLN-GVVLPLDPW--KIRLLYLNSTLSTIGKKYKFRIALGL 163
Query: 211 NGYIWI 216
NG++WI
Sbjct: 164 NGFVWI 169
>gi|52550473|gb|AAU84322.1| conserved hypothetical protein [uncultured archaeon GZfos9D1]
Length = 228
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT ++G++ A+ G+V + I V +L +Y P GD+VIG++ + W + +
Sbjct: 19 GEGTYVEEGKVYASQYGIVSERGE-IKVVSLSGKYMPSNGDVVIGKITAISFPFWIVNLA 77
Query: 112 FTQDAILMLSSMNLPDGIQRRR 133
+A L +S+++ GI R +
Sbjct: 78 SPYEARLHVSALS---GIAREK 96
>gi|52548822|gb|AAU82671.1| conserved hypothetical protein [uncultured archaeon GZfos19A5]
Length = 228
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT ++G++ A+ G+V + I V +L +Y P GD+VIG++ + W + +
Sbjct: 19 GEGTYVEEGKVYASQYGIVSERGE-IKVVSLSGKYMPSNGDVVIGKITAISFPFWIVNLA 77
Query: 112 FTQDAILMLSSMNLPDGIQRRR 133
+A L +S+++ GI R +
Sbjct: 78 SPYEARLHVSALS---GIAREK 96
>gi|156088283|ref|XP_001611548.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798802|gb|EDO07980.1| conserved hypothetical protein [Babesia bovis]
Length = 207
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 12/141 (8%)
Query: 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE-----LN 140
Y+P+ GD VIG V+ + L+I +AIL +R R ++E
Sbjct: 33 YRPKIGDHVIGVVVAKNSDFYSLDIGGLTEAILPAVD-GFRGATKRNRPNINEGDVIFCQ 91
Query: 141 MRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD-PYLVKRRKQHFHHL 199
+ + N+L EV D Q + +G LE G + +V PY H L
Sbjct: 92 ITKQYPRNELP-VEVSCLDVDDMKQWTTKETYFGSLEGGFMFSVPIPYSYCLSGARCHVL 150
Query: 200 EE----YGIDLIIGCNGYIWI 216
E+ + ++ +G NG +WI
Sbjct: 151 EKCAGRFKYEIAVGLNGRVWI 171
>gi|195340077|ref|XP_002036643.1| GM11135 [Drosophila sechellia]
gi|194130523|gb|EDW52566.1| GM11135 [Drosophila sechellia]
Length = 204
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 26 LSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRAL 82
+S + + N G+ + ED I+ G GT +Q G + A+ G+V + + V
Sbjct: 1 MSEQQDENVVCLPGERLCRSEDSIVLGIGTYEQNGYVYASKSGIVNIEDSGDNCQVVSVH 60
Query: 83 RARYK---PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDEL 139
+ + P TGD+V RV+ PK K I ++ +L S L R T D +
Sbjct: 61 KPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRV 120
Query: 140 NMRSIFTENDLVCAEV 155
++ F D++ A V
Sbjct: 121 DIYKSFRPGDVILARV 136
>gi|195472096|ref|XP_002088338.1| Csl4 [Drosophila yakuba]
gi|194174439|gb|EDW88050.1| Csl4 [Drosophila yakuba]
Length = 203
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGDIVIGRVI 99
ED I+ G GT +Q G + A+ G+V E V + + P TGD+V RV+
Sbjct: 20 EDNIVLGIGTFEQNGYIYASKSGIVHIEESGENCQVVSVHKPGFHLTIPATGDVVTARVL 79
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
PK K I ++ +L S L R T D +++ F D++ A V +
Sbjct: 80 VTTPKFVKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQL 139
Query: 160 GDGSLQLQARNQ 171
L A N+
Sbjct: 140 EQTFLLTTAENE 151
>gi|38048131|gb|AAR09968.1| similar to Drosophila melanogaster CG6249, partial [Drosophila
yakuba]
Length = 200
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGDIVIGRVI 99
ED I+ G GT +Q G + A+ G+V E V + + P TGD+V RV+
Sbjct: 17 EDNIVLGIGTFEQNGYIYASKSGIVHIEESGENCQVVSVHKPGFHLTIPATGDVVTARVL 76
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQ 159
PK K I ++ +L S L R T D +++ F D++ A V +
Sbjct: 77 VTTPKFVKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQL 136
Query: 160 GDGSLQLQARNQ 171
L A N+
Sbjct: 137 EQTFLLTTAENE 148
>gi|321469195|gb|EFX80176.1| hypothetical protein DAPPUDRAFT_304185 [Daphnia pulex]
Length = 242
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 28/200 (14%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVV--ERINKLIYVRALRARYKPE 89
P VT+ T + I+ G G ++ T GV+ + ++ RY P
Sbjct: 16 PGDSVTLSKTDEISTVKIVLGPGLRKYGKQILVTKSGVLRTKASPATYWIDCHHKRYVPA 75
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVD-------ELNMR 142
GD VIG V V + +K+ I +++A LSS+ P ++ + + +L +
Sbjct: 76 RGDDVIGVVTNKVGESYKVNIGSSEEA--SLSSIAFPGATKKNKPNIQIGDLVFAKLLIA 133
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDP--YLVKRRKQHFHHLE 200
SI E +LVC +S G+ N G L L P ++ K L+
Sbjct: 134 SIDMEPELVCV---NSLGE--------NVGLGVLSTSGFLFTVPLHHIRKLLNPECTLLK 182
Query: 201 EYG----IDLIIGCNGYIWI 216
G ++ +G NG IWI
Sbjct: 183 SLGKALSFEIAVGMNGKIWI 202
>gi|126465757|ref|YP_001040866.1| exosome complex RNA-binding protein Rrp4 [Staphylothermus marinus
F1]
gi|126014580|gb|ABN69958.1| ribosomal RNA-processing protein RRP4 [Staphylothermus marinus F1]
Length = 240
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 62 LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLS 121
+ + V G+ +K + V L Y P+ D+VIG + V W ++I AIL S
Sbjct: 45 IYSDVLGIASITDKTVSVIPLEGVYFPKKDDLVIGLITGVGITNWIVDIRAPYKAILNGS 104
Query: 122 SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQL 181
+ I+ + N+R + + A++ L + + GK+ G +
Sbjct: 105 EV-----IEGFNPIIH--NLRDYLDIGEYIVAKIAVFDRTRDPVLTVKGKGLGKITEGTV 157
Query: 182 LTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIW 215
+ V P V R +K +L + G ++I+ NG +W
Sbjct: 158 IEVKPSRVPRIIGKKGSMLNLLTSKTGCNIIVAQNGMVW 196
>gi|195578461|ref|XP_002079084.1| GD22191 [Drosophila simulans]
gi|194191093|gb|EDX04669.1| GD22191 [Drosophila simulans]
Length = 204
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV---ERINKLIYVRALRARYK---PETGDIVIGRVI 99
ED I+ G GT +Q G + A+ G+V + + V + + P TGD+V RV+
Sbjct: 21 EDSIVLGIGTYEQNGYVYASKSGIVNIEDSGDNCQVVSVHKPGFHLTIPATGDVVTARVL 80
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
PK K I ++ +L S L R T D +++ F D++ A V
Sbjct: 81 VTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARV 136
>gi|350411956|ref|XP_003489500.1| PREDICTED: exosome complex component RRP40-like [Bombus impatiens]
Length = 269
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 30/199 (15%)
Query: 36 VTVGDTIP-----VYEDGILKGHGTSDQKGELAATVCGVVERINKLIY-VRALRARYKPE 89
V GDTI ++ I+ G G + + A GV+++ +Y V + + RY P
Sbjct: 37 VMPGDTIKDITTITKKETIILGPGLRREADTVFAYKAGVLKKTEPAVYYVDSYQKRYVPN 96
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM------NLPDGIQRRRTAVDELNMRS 143
G+ V+G V + +K++I ++ A L + N PD IQ +L + S
Sbjct: 97 RGENVVGIVTQRSSDIFKVDIGASEQASLSYLAFEGATKKNRPD-IQVGDLVFAKLLVAS 155
Query: 144 IFTENDLVCAEVRSSQGDGSLQLQARNQKYGKL-ERGQLLTVDPYLVK----RRKQHFHH 198
E +LVC + S G + +K G L G L T LV+ R F
Sbjct: 156 KDMEPELVCVD---SHG--------KEKKLGALSSEGMLFTCSLSLVRKILNRNSLLFKT 204
Query: 199 LE-EYGIDLIIGCNGYIWI 216
L ++ +G NG +W+
Sbjct: 205 LSRSQAFEVAVGMNGRVWV 223
>gi|167045223|gb|ABZ09883.1| putative KH domain protein [uncultured marine crenarchaeote
HF4000_APKG8O8]
Length = 225
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 24/184 (13%)
Query: 62 LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLS 121
+ AT G E + + V L Y P+ D+VIG++ W E+N + +L
Sbjct: 33 VTATAVGFYEIEDNAVNVIPLTGFYTPKPDDLVIGKITSHTSFSW--EVNINSFCVSILP 90
Query: 122 SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQL 181
+ ++ + + DEL+ + DL+ + + + + GK++ G+L
Sbjct: 91 AFDIFG--KDYSPSKDELSSK--LKTGDLIVGRIVNVNPGRDPLMTINGENLGKIDSGEL 146
Query: 182 LTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKC 241
+ + P + R +IG +G + + +EA + G N ++ KC
Sbjct: 147 VKISPTKIPR---------------LIGKDGSMI--QTIEAATNATITVGQNG-LVVLKC 188
Query: 242 DKNS 245
D ++
Sbjct: 189 DNST 192
>gi|195434078|ref|XP_002065030.1| GK15242 [Drosophila willistoni]
gi|194161115|gb|EDW76016.1| GK15242 [Drosophila willistoni]
Length = 213
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVV-----ERINKLIYVRALRARYK-PETGDIVIGRVI 99
ED I+ G GT +Q G + A G+V + +++ V P TGDIV RV+
Sbjct: 30 EDNIILGLGTYEQNGYIYACKSGIVSIDDSDENTQIVSVHKPGFHLTIPVTGDIVTARVL 89
Query: 100 EVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
PK K I ++ +L S L R T D +++ F D++ A V
Sbjct: 90 VTTPKFAKCAIFCVRNQLLENSYRGLLRKEDVRETEKDRVDIYKSFKPGDVILARV 145
>gi|66818409|ref|XP_642864.1| hypothetical protein DDB_G0276783 [Dictyostelium discoideum AX4]
gi|74876956|sp|Q7KWX9.1|EXOS3_DICDI RecName: Full=Putative exosome complex component rrp40; AltName:
Full=Exosome component 3; AltName: Full=Ribosomal
RNA-processing protein 40
gi|60470923|gb|EAL68893.1| hypothetical protein DDB_G0276783 [Dictyostelium discoideum AX4]
Length = 237
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 52 GHGTSDQKGELAATVCGVV--ERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
G G K + AT GV+ + ++ ++ + RY P+ D+VIG +IE + +K++
Sbjct: 26 GPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQKRYVPQVEDMVIGTIIEKHAESFKVD 85
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
I + A+L S +G + + + +L+ V + D ++
Sbjct: 86 IGSSCSALLSAYSF---EGATKSN--------KPLLNVGNLIYCRVTVANRDMEPEVVCL 134
Query: 170 NQK-----YGKLERG-----------QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
+QK +G+L G LL+ D +L++ +H + ++ +G NG
Sbjct: 135 SQKQKAEGFGQLIGGYMLNCSLGLSHYLLSEDCFLLQILGKHIPY------EIAVGVNGR 188
Query: 214 IWI 216
+WI
Sbjct: 189 VWI 191
>gi|429216661|ref|YP_007174651.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Caldisphaera lagunensis DSM 15908]
gi|429133190|gb|AFZ70202.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Caldisphaera lagunensis DSM 15908]
Length = 230
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 57 DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDA 116
D K E + GVV+ + I L Y P+ GDIVIG V W ++IN A
Sbjct: 27 DYKNEKRVAIIGVVDYKQEGISYSPLNGIYIPKEGDIVIGLVTSHGVANWFVDINSPYQA 86
Query: 117 ILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKL 176
I LS + Q + D + + + A++ + + L +++ GK+
Sbjct: 87 I--LSVQDFFGTKQSSQFPEDPFKYLQV---GEYIKAKIAAFDRIRNPLLTVQDKGLGKI 141
Query: 177 ERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
G +++V P V R +K + E G + + NG I I
Sbjct: 142 AEGIVVSVHPTRVPRIIGKKGSMIEMLKNETGCEFFVAVNGMINI 186
>gi|302760611|ref|XP_002963728.1| hypothetical protein SELMODRAFT_141745 [Selaginella moellendorffii]
gi|300168996|gb|EFJ35599.1| hypothetical protein SELMODRAFT_141745 [Selaginella moellendorffii]
Length = 231
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 22/199 (11%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G G S + A G + ++V + RY P D VIG VI+ + + +++N
Sbjct: 29 GSGLSQDADRVVAIKAGRLNHAKSKLWVEGSQKRYIPSAEDSVIGIVIDRRAEEFLVDLN 88
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGS-----LQL 166
+L + S +G R+ N++ E +V V + D S L
Sbjct: 89 APVLGLLPILSF---EGATRKNIP----NLK----EGAVVYGRVVKAHRDISPALSCLDA 137
Query: 167 QARNQKYGKLERGQLLTVDPYLVKR--RKQHFHHLEEYG----IDLIIGCNGYIWIGEHV 220
+ YG L+ G L L + + LE G ++ +G NG +W+
Sbjct: 138 SGKGSGYGPLKEGYLFECSTGLARSLLGTPTYPVLEALGKSLAFEIAVGVNGRVWVKSDA 197
Query: 221 EARDKMVVDQGSNSEQLIA 239
A +V + NSE L A
Sbjct: 198 PATTVLVSNAIINSECLSA 216
>gi|320165398|gb|EFW42297.1| exosome component 3 [Capsaspora owczarzaki ATCC 30864]
Length = 275
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 17/203 (8%)
Query: 39 GDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRV 98
G I G+L+G + G A V R+ Y+ + + RY P ++V+G +
Sbjct: 66 GRVIAASRAGVLQGSMGAASTGTGANAHSSQVARL----YIASSQKRYVPAKDELVVGII 121
Query: 99 IEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEN-----DLVCA 153
+ + + +K++I A L + R A+ L + N ++VC
Sbjct: 122 TDRMGEAFKVDIGAAASASLSFLAFEGATKRNRPNLAIGALVYGKLAVANKDMEPEMVCI 181
Query: 154 EVR-SSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNG 212
+ + G G L L R +LL+ DP ++ +HF ++ IG NG
Sbjct: 182 DAADKAAGMGELTGGYLIHISSGLTR-RLLSRDPAVLIALGKHF------ALETAIGLNG 234
Query: 213 YIWIGEHVEARDKMVVDQGSNSE 235
WI + ++ + NSE
Sbjct: 235 RTWINAQTPQQVVLIANAIQNSE 257
>gi|452821561|gb|EME28590.1| exosome complex component RRP4 [Galdieria sulphuraria]
Length = 244
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 29/199 (14%)
Query: 36 VTVGDTIPVYEDG--ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDI 93
V GD + E+G I G G + L A G + + I++ + RY P GD+
Sbjct: 10 VFPGDKLFKLENGDNIRIGQGVVKRGDGLVALKPGYLHKDGNKIWIETAQKRYIPTVGDL 69
Query: 94 VIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153
VIG +++ +++++ A+L + + +G +R R + V A
Sbjct: 70 VIGIIVDRSSDFYQVDVGGFSTALLPILAF---EGATKRN--------RPHLSAGSAVYA 118
Query: 154 EVRSSQGDGSLQLQ-----------ARNQKYGKLERGQLLTVDPYLVKR----RKQHFHH 198
V S+ D QL +G+L +G L+ L + R F
Sbjct: 119 RVVSADRDSEPQLSCLLPGTQHSWVTGETIFGELSQGNLIHCSISLCRNILLGRNSVFTE 178
Query: 199 LEEY-GIDLIIGCNGYIWI 216
L +Y + G NG IW+
Sbjct: 179 LGKYIPFEQATGMNGRIWV 197
>gi|374633083|ref|ZP_09705450.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Metallosphaera yellowstonensis MK1]
gi|373524567|gb|EHP69444.1| RNA-binding protein Rrp4 (containing S1 domain and KH domain)
[Metallosphaera yellowstonensis MK1]
Length = 244
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 13/164 (7%)
Query: 58 QKGELAATVCGVVERINKLIYVRALRAR-YKPETGDIVIGRVIEVVPKRWKLEINFTQDA 116
Q + ++V G++E V L Y P+ GD V+G V +V W +I A
Sbjct: 38 QGNKYYSSVLGLLEVRESTFEVIPLEGSFYYPKVGDTVVGLVEDVELYGWMTDIKAPYSA 97
Query: 117 ILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKL 176
L SS+ R V E ++R D + A+V S L + + G++
Sbjct: 98 YLPASSL------LGRPANVGE-DLRRYIDVGDYIIAKVDSFDRTTDPVLSVKGKGLGRV 150
Query: 177 ERGQLLTVDPYLVKR----RKQHFHHL-EEYGIDLIIGCNGYIW 215
G ++ + P V R K L E G ++++ NG +W
Sbjct: 151 SSGIVIDIMPVKVPRVVGKGKSMLEMLISETGCEILVAQNGRVW 194
>gi|389860734|ref|YP_006362974.1| ribosomal RNA-processing protein RRP4 [Thermogladius cellulolyticus
1633]
gi|388525638|gb|AFK50836.1| ribosomal RNA-processing protein RRP4 [Thermogladius cellulolyticus
1633]
Length = 241
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 12/144 (8%)
Query: 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAV 136
I V Y P D+VIG + + W++ I A L N D I+
Sbjct: 63 IAVIPFNTVYYPRRDDVVIGVIEGIGITAWEVNIRSPYKAYL-----NASDAIENFNPLY 117
Query: 137 DELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LVKRR 192
+L +S D+V A++ + L R + GK+ G ++ V P ++ ++
Sbjct: 118 HDL--KSYLDVGDMVLAKIVAFDRTRDPLLTIRGKGLGKIIEGIVIEVKPSRIPRIIGKK 175
Query: 193 KQHFHHL-EEYGIDLIIGCNGYIW 215
F+ L + G D+ + NG+IW
Sbjct: 176 GSMFNLLTTKTGCDITVAQNGFIW 199
>gi|384251760|gb|EIE25237.1| hypothetical protein COCSUDRAFT_52805 [Coccomyxa subellipsoidea
C-169]
Length = 190
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 14/77 (18%)
Query: 88 PETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPD---GIQR----RRTAVDELN 140
PETG+IVI +V +V P+ ++L +++ L D GI R R T +D++
Sbjct: 67 PETGNIVIAKVNKVNPR-------LASASLLCVNTQPLTDSFSGIIRQQDVRATEIDKVE 119
Query: 141 MRSIFTENDLVCAEVRS 157
M S F DLV AEV S
Sbjct: 120 MYSCFRPGDLVRAEVIS 136
>gi|147921606|ref|YP_684577.1| hypothetical protein LRC269 [Methanocella arvoryzae MRE50]
gi|110619973|emb|CAJ35251.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 187
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 33 NSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCG--VVERINKLIYVR-ALRARYKPE 89
N V GD + E+ L G GT ++ G + A + G + + + +Y+ A+ A P
Sbjct: 4 NDFVVPGDLVGTSEE-YLPGSGTYEENGNIYADITGKIAINKKERAVYIEPAVHAPPVPR 62
Query: 90 TGDIVIGRVIEV 101
GDIVIGRV ++
Sbjct: 63 EGDIVIGRVTDI 74
>gi|401411503|ref|XP_003885199.1| hypothetical protein NCLIV_055960 [Neospora caninum Liverpool]
gi|325119618|emb|CBZ55171.1| hypothetical protein NCLIV_055960 [Neospora caninum Liverpool]
Length = 276
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 25/166 (15%)
Query: 78 YVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVD 137
Y+R RY+P GD+V+G V + + + I D L L + +G RR
Sbjct: 92 YLRGRHKRYEPAEGDVVVGIVSGKKNEAYSVNIRARGDGFLPLVAGF--EGATRRHK--P 147
Query: 138 ELNMRSIFTENDLVC----------AEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY 187
EL+ S+ ++C AE+ + ++ + G+LE G ++ V P
Sbjct: 148 ELHRGSL-----VLCRVERMSAELGAELTCVDPNCKKSWTSKEKLLGELEGGFVIDVPPP 202
Query: 188 L-VKRRKQHFHHLEEYG----IDLIIGCNGYIWIGEHVEARDKMVV 228
L + H LE G ++ G NG IWI EA D +++
Sbjct: 203 LAISLASPHCFLLESLGERLAFEIAAGANGRIWI-RTKEAGDAILI 247
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,730,878,558
Number of Sequences: 23463169
Number of extensions: 188843125
Number of successful extensions: 482842
Number of sequences better than 100.0: 634
Number of HSP's better than 100.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 481607
Number of HSP's gapped (non-prelim): 673
length of query: 327
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 185
effective length of database: 9,027,425,369
effective search space: 1670073693265
effective search space used: 1670073693265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)