BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020356
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09704|RRP4_SCHPO Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rrp4 PE=3 SV=1
Length = 329
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 142/234 (60%), Gaps = 9/234 (3%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++GHGT + G + A+V G V+R+NKLI V+ LR++Y PE GD++IG++ EV PKRWK+
Sbjct: 70 FMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKV 129
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
+I Q+A+LMLSS+NLP GIQRR+ DEL MRS F E DL+ AEV+ DGS+ +
Sbjct: 130 DIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHT 189
Query: 169 RNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVV 228
R+ KYGKL G L V P LV R K H + L G+D+I+ NGY+W+ +H E + V
Sbjct: 190 RSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQHSSVS 248
Query: 229 DQGSNSEQLIAKCDKNSMDLDEQDGTCTPREARQNICRIANAIRVLSRLGFNIT 282
E A S + DE DG R NI R++ I+ L+ +T
Sbjct: 249 ITRLEEE---ASESIYSNENDEIDGYT-----RLNISRVSICIKGLASRSLPLT 294
>sp|Q8VBV3|EXOS2_MOUSE Exosome complex component RRP4 OS=Mus musculus GN=Exosc2 PE=2 SV=1
Length = 293
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL KA + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPKARKPLSESLGRDSKKHLVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDK 225
K HFH L G +I+G NG+IWI E +D+
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWIYPTPEHKDE 214
>sp|Q2KID0|EXOS2_BOVIN Exosome complex component RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1
Length = 293
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 133/204 (65%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSESLGRESKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IW+
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWV 205
>sp|Q13868|EXOS2_HUMAN Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2
Length = 293
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
Query: 13 KVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVER 72
++RL A + L + V GDTI + G ++GHGT + +L A+V G VER
Sbjct: 4 EMRLPVARKPLSERLGRDTKKHLVVPGDTI-TTDTGFMRGHGTYMGEEKLIASVAGSVER 62
Query: 73 INKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR 132
+NKLI V+AL+ RY E GDIV+GR+ EV KRWK+E N D++L+LSSMNLP G RR
Sbjct: 63 VNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRR 122
Query: 133 RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192
R+A DEL MR E DL+ AEV++ DG++ L R+ KYGKL +G L+ V P LVKR+
Sbjct: 123 RSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQ 182
Query: 193 KQHFHHLEEYGIDLIIGCNGYIWI 216
K HFH L G +I+G NG+IWI
Sbjct: 183 KTHFHDL-PCGASVILGNNGFIWI 205
>sp|P38792|RRP4_YEAST Exosome complex component RRP4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP4 PE=1 SV=1
Length = 359
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 27 SSKSNPNS-CVTVGDTI---PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRAL 82
+SKS +S VT G+ + P++ ++GHGT ++V G V R+N+L+ V L
Sbjct: 45 ASKSESDSQIVTPGELVTDDPIW----MRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPL 100
Query: 83 RARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMR 142
+ RY PETGD V+GR+ EV KRWK++I Q A+LML S+NLP GI RR++ DEL MR
Sbjct: 101 KGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMR 160
Query: 143 SIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEY 202
S E DL+ AEV+S DGS L R+ KYGKL G V L+ R K H H+L
Sbjct: 161 SFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG- 219
Query: 203 GIDLIIGCNGYIWIGEHVE---ARDKMVVDQGSNSEQLIAKCDKNSMDL----------- 248
I +++G NGYIW+ + + ARD +NS + + ++ L
Sbjct: 220 NITVVLGVNGYIWLRKTSQMDLARD---TPSANNSSSIKSTGPTGAVSLNPSITRLEEES 276
Query: 249 ------DEQDGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLS 293
DE D + + RQ ICR AN I+ L+ IT + I+ S
Sbjct: 277 SWQIYSDENDPSIS-NNIRQAICRYANVIKALAFCEIGITQQRIVSAYEAS 326
>sp|Q5JIR5|ECR1_PYRKO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1635 PE=3 SV=1
Length = 257
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+VE +I V L Y PE GD V+G++++V W ++I
Sbjct: 26 GRGTFREGNAIYSTVIGLVEIRGNVIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDEL--NMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
A S+ + D ++ R +D L ++R IF D++ A+V++ + L +
Sbjct: 86 APYQA-----SLRVQDAVEER---IDLLKTDLRKIFDIGDIIYAKVKAFNEVNQIDLTTK 137
Query: 170 NQKY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEA 222
+ G L GQL+T+ P L+ + + ++ G +I+G NG++W+ +
Sbjct: 138 GMPFKGGPLRGGQLVTITPSKVPRLIGKGGSMINMIKTLTGTRIIVGQNGWVWVSGKNDE 197
Query: 223 RDKMVVDQGSNSEQLIAKCDKNS 245
+++ ++ I K D+ S
Sbjct: 198 LERLAIEA-------ILKVDRES 213
>sp|Q9V120|ECR1_PYRAB Probable exosome complex RNA-binding protein 1 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06090 PE=3 SV=1
Length = 265
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + I RT ++R F D++ A+V++ ++ L +
Sbjct: 86 APYPANLKIQDFT-DEKIDLLRT-----DLRKFFDIGDIIYAKVKAITEVNNIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L+ GQ++ + P ++ R + +++ + +I+G NG+IW+ +A +
Sbjct: 140 PFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIWVSGKNDALE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K DK S
Sbjct: 200 KLAIEA-------ILKIDKES 213
>sp|O59221|ECR1_PYRHO Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH1551 PE=3 SV=1
Length = 265
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ I V L Y PE GD VIG++++V W ++I
Sbjct: 26 GRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + I RT ++R F D++ +V++ ++ L +
Sbjct: 86 APYLANLKIQDFT-DEKIDLLRT-----DLRKFFDIGDIIYGKVKAITEVNNIDLTTKGM 139
Query: 172 KY--GKLERGQLLTVDPY----LVKRRKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L+ GQ++ + P ++ R + +++ + +I+G NG+IW+ EA +
Sbjct: 140 PFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIWVNGKNEALE 199
Query: 225 KMVVDQGSNSEQLIAKCDKNS 245
K+ ++ I K D+ S
Sbjct: 200 KLAIEA-------ILKIDRES 213
>sp|A1RXQ7|ECR1_THEPD Probable exosome complex RNA-binding protein 1 OS=Thermofilum
pendens (strain Hrk 5) GN=Tpen_0582 PE=3 SV=1
Length = 237
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 74 NKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRR 133
N+++ V L+ +Y P G IV+G+V+++ W+++IN A+L +S + R
Sbjct: 55 NRVVKVIPLKGKYFPVEGHIVVGKVVDIGFTSWEVDINSPYVAVLPVSE------VTSRP 108
Query: 134 TAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY----LV 189
+ + I DL+ A++ S L + + GK+ RG L+ + P ++
Sbjct: 109 VTISRNELSRILDVGDLILAKIVSFDLSKDPVLTIKESRLGKIPRGTLVEIPPQKVPRVI 168
Query: 190 KRRKQHFHHLEE-YGIDLIIGCNGYIWI 216
RR +E+ G+ LI+G NG I +
Sbjct: 169 GRRGSMVSMIEDLLGVKLIVGQNGRIVV 196
>sp|Q8U0L8|ECR1_PYRFU Probable exosome complex RNA-binding protein 1 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1569 PE=3 SV=1
Length = 264
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + + +TV G+V+ I V L Y PE GD V+G++++V W ++I
Sbjct: 26 GRGTFKEGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVLGKIVDVKFSSWTVDIG 85
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
A L + + I RT ++R F D++ A+V+ +++L +
Sbjct: 86 SPYSATLKIQDYT-DEKIDLLRT-----DLRKFFDIGDIIYAKVKGINEVNNIELTTKGM 139
Query: 172 KY--GKLERGQLLTVD----PYLVKRRKQHFHHLEEYGID-LIIGCNGYIWIGEHVEARD 224
+ G L GQ++ + P ++ + + +++ +I+G NG+IWI +
Sbjct: 140 PFNGGPLRGGQIIKITSSKVPRVIGKGGSMINMIKKLTQSRIIVGQNGWIWISSKNPELE 199
Query: 225 KMVVD 229
K+ ++
Sbjct: 200 KLAIE 204
>sp|O26780|ECR1_METTH Probable exosome complex RNA-binding protein 1
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_684 PE=3 SV=1
Length = 311
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
E+ G GT + + ++ G+V NK I V L+++Y P+ GD+VIG + ++
Sbjct: 18 ENEYFPGRGTFKEDNRICSSFVGLVSVRNKKINVIPLQSKYIPKRGDVVIGEITDIRFSM 77
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W L+IN +L S + D+ + S+F D++ V ++
Sbjct: 78 WGLDINSPYTGLLPASEV----------FGKDKRELESVFDIVDVLLLRVVDVDEVKKVK 127
Query: 166 LQARNQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEYG-IDLIIGCNGYIWI 216
L + + GK G L+ + P L+ +R + ++E D+++G NG +WI
Sbjct: 128 LGLKGRGLGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGVVWI 183
>sp|Q12ZB8|ECR1_METBU Probable exosome complex RNA-binding protein 1 OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_0198 PE=3 SV=1
Length = 263
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
+ G GT + G + + + G+ + V +Y P D +I VI+V P W +E
Sbjct: 18 MAGPGTYVKNGNIYSLLYGIA-NFKGRVSVVPFSGKYIPSRKDFIIVNVIDVTPSNWIME 76
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
D +L +S +R VD MR D V V+ ++L R
Sbjct: 77 TGSPYDGLLHVSEF------PKR---VDSSEMRKFMDVGDCVIVRVKDVSKAMKVELSMR 127
Query: 170 NQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
Q L +G+++ V P V R H + +E D+ +G NG IWI
Sbjct: 128 EQGSRALSKGRIIEVVPSKVPRVIGHGGSMVSILKKESNCDVFVGKNGRIWI 179
>sp|Q8ZVM8|ECR1_PYRAE Probable exosome complex RNA-binding protein 1 OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=PAE2208 PE=3 SV=1
Length = 235
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 82/202 (40%), Gaps = 34/202 (16%)
Query: 31 NPNSCVTVGDTI---------PVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRA 81
P V GD I PVY D G+ + V G+VE ++ V
Sbjct: 5 TPRQLVFPGDVIATADSKVEGPVYLD-----------NGKYRSLVVGLVEFREDVVVVVP 53
Query: 82 LRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNM 141
L YKP+ GD+VIG V +V+ W++++ A LP G R E
Sbjct: 54 LEGTYKPKKGDLVIGYVTDVLATGWEVDVRSFMPA-------YLPVGEALHRHVDLETTP 106
Query: 142 RSIFTENDLVCAEVRSS---QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR----RKQ 194
+ F V + + L +++K GK+E G ++ + P V R R
Sbjct: 107 LTTFLNIGDVVVAKVKDVDLTDEYPIILTLKDEKVGKVESGTVVEITPVKVPRVIGKRGS 166
Query: 195 HFHHLEEYGIDLIIGCNGYIWI 216
+ L E G D+++G NG IW+
Sbjct: 167 MLNTLMELGCDIVVGQNGRIWV 188
>sp|A5UJS0|ECR1_METS3 Probable exosome complex RNA-binding protein 1
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=Msm_0243 PE=3 SV=1
Length = 298
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 15/176 (8%)
Query: 46 EDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKR 105
+D G GT + G++ +++ G+V NK I V L+++Y P+ GD+VIG++ +V
Sbjct: 18 DDEYYSGRGTFKENGKICSSLMGLVSLRNKKIRVIPLKSKYVPKKGDVVIGKIKDVRFSM 77
Query: 106 WKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165
W ++IN IL + R + ELN +F D++ V ++
Sbjct: 78 WDVDINSPYSGILPAFEV-----FGREKK---ELN--KVFDVGDVLFLRVVDVDEVKKVK 127
Query: 166 LQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGYIWI 216
L + + GK G ++ + P V R +K ++ ++ +I+G NG +W+
Sbjct: 128 LGLKGRGMGKFRGGIIVDITPTKVPRLIGKKGSMINMIKDKTNCKIIVGQNGLVWV 183
>sp|Q2NEX6|ECR1_METST Probable exosome complex RNA-binding protein 1 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_1250 PE=3 SV=1
Length = 222
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 25/175 (14%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G GT + G++ +++ G+V ++ I V L+ Y P GD+VIGRV W ++IN
Sbjct: 24 GRGTYKENGKIYSSITGLVYFESEQIKVIPLKDTYSPNYGDLVIGRVTGSSYSSWSIDIN 83
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
T L + L D +E N+ +I D++ V + ++L R++
Sbjct: 84 STYHG--FLPTTELYDK--------NEPNINNIINIKDMLLLRVANVDEINRVKLTLRSR 133
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHF---------HHLEEYG-IDLIIGCNGYIWI 216
GK +G ++ VK+ HF ++EY D+IIG NG IWI
Sbjct: 134 GLGKFNQGTIIK-----VKQPTIHFLSEENAFLTTMIQEYTYTDVIIGKNGLIWI 183
>sp|E0SQX5|ECR1_IGNAA Probable exosome complex RNA-binding protein 1 OS=Ignisphaera
aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1)
GN=Igag_1503 PE=3 SV=1
Length = 253
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Query: 24 ESLSSKSNPNSCVTVGDTIPVYEDGILKG----HGTSDQKGELAATVCGVVERIN----K 75
E++S +++ V GD++ + +D ++ + +T+ +++ N K
Sbjct: 5 EAISLQTSKRILVVPGDSVQISQDVVIDPQQILYLYKKDDNTFISTITALLDFENIDDKK 64
Query: 76 LIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA 135
+ V L+ RY P GDIVIG V++V W ++IN LS +N D + R
Sbjct: 65 KLRVIPLKGRYIPREGDIVIGIVVDVTLSSWIIDINSP-----YLSVLNASDYLGRSFNP 119
Query: 136 VDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---- 191
+ + N+R D+V ++ + L +++ GK+ G L+ ++P V R
Sbjct: 120 LTD-NIRKYLEIGDVVVGKIATFDRSRGPILTVQDKGLGKVVDGSLIEIEPIKVARVIGK 178
Query: 192 RKQHFHHL-EEYGIDLIIGCNGYI 214
+K + L E+ D+++G NG I
Sbjct: 179 KKSMLNMLIEQTKCDILVGNNGRI 202
>sp|O29758|ECR1_ARCFU Probable exosome complex RNA-binding protein 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_0492 PE=1 SV=1
Length = 223
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 40/183 (21%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + G++ A + G+ ++ + V L+ RY P GD+VIG + EV W ++I
Sbjct: 19 GYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDIY 78
Query: 112 FTQDAILMLSS-------------MNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSS 158
A L +S +++ D I + +D M+ T D +C +R
Sbjct: 79 SPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRICRPIRF- 136
Query: 159 QGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHL--EEYGIDLIIGCNGY 213
G+++ ++P V R +K L E + +++G NG
Sbjct: 137 --------------------GRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGL 176
Query: 214 IWI 216
IW+
Sbjct: 177 IWV 179
>sp|Q8PTT9|ECR1_METMA Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=MM_2622 PE=3 SV=1
Length = 260
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + ++ +++CG+ + V L Y P D+VIG VI V P W L+I
Sbjct: 20 GYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSVNDVVIGVVIVVTPSNWILDIA 79
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
D +L +S RR V+ M I D V VR ++L R+
Sbjct: 80 APYDGLLHVSEY------PRR---VESREMPEILDVGDSVILRVRDVDSSMKIELALRDP 130
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
KL GQ++ V+P V R H + +E + +G NG IWI
Sbjct: 131 NLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI 180
>sp|Q8TYC0|ECR1_METKA Probable exosome complex RNA-binding protein 1 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0382 PE=3 SV=1
Length = 239
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 49 ILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKL 108
++ GT E+ + V G+V+ + I V L Y+P GD V+G V EV W +
Sbjct: 25 VIASEGTYTSGDEVYSKVTGLVDIDGRRIRVIPLAGPYRPSPGDFVVGIVEEVKFSSWLI 84
Query: 109 EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQA 168
++ AIL +S+ + E ++ + D++ A VR ++L
Sbjct: 85 DVRAPLPAILHVSNA------LEEEVDLIETDLSRYYRPGDVITAVVREVDPVQRVELSL 138
Query: 169 ----RNQKYGKLERGQLLTVDPYLVKR---RKQHFHHLEE--YGIDLIIGCNGYIWI 216
+ G+L+ GQ++ +DP V R RK + + G D+++G NG I++
Sbjct: 139 LEDDAPTRLGRLQGGQVVEIDPVKVPRVIGRKGSMIKMLKRVLGCDIVVGANGRIYV 195
>sp|B1L6N8|ECR1_KORCO Probable exosome complex RNA-binding protein 1 OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1371 PE=3 SV=1
Length = 228
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 16/165 (9%)
Query: 57 DQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDA 116
D+ G + + G+V + I + L Y P+ D+VIG V ++ ++I
Sbjct: 34 DESGTIRSKKLGLVSLKDDEISIVPLVGAYIPKEDDLVIGIVSKISGNTILVDIRSPYQG 93
Query: 117 ILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKL 176
L IQRR VD + D++ A+VRS G SL L + GKL
Sbjct: 94 AL---------PIQRRAERVD--LKKYDLKIGDVILAKVRSFDGASSLILTIDAEGLGKL 142
Query: 177 ERGQLLTVDPYLVKR----RKQHFHHLEEYG-IDLIIGCNGYIWI 216
E G LL VDP V R R+ L+E ++I+ NG IW+
Sbjct: 143 EGGYLLEVDPAKVPRVIGKRQSMLSMLKEATRSEIIVANNGRIWV 187
>sp|Q469M4|ECR1_METBF Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A2505 PE=3
SV=1
Length = 260
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 16/186 (8%)
Query: 36 VTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVI 95
V GD I E+ G+GT + ++ + CG+ + V L Y P D+VI
Sbjct: 6 VIPGDLIS--ENSKKAGYGTYVKNDKIYSLFCGIENLKEDKVGVIPLAGVYIPSANDVVI 63
Query: 96 GRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEV 155
G VI V P W ++I D + +S P I+ R M + D + V
Sbjct: 64 GIVIVVTPSNWIMDIASPYDGLFHVSE--YPRRIESRE-------MHEVLNVGDSIILRV 114
Query: 156 RSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGC 210
+ ++L R+ + KL+ GQ++ V+P V R H + +E + +G
Sbjct: 115 KDVDNSMKVELALRDSSFHKLKTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQ 174
Query: 211 NGYIWI 216
NG IWI
Sbjct: 175 NGRIWI 180
>sp|Q9HIP3|ECR1_THEAC Probable exosome complex RNA-binding protein 1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=Ta1292 PE=3 SV=1
Length = 236
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 28/234 (11%)
Query: 35 CVTVGDTIPV---YEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
V GD I V +G+ +G Q + G ++ ++ + V +Y P G
Sbjct: 10 IVLPGDPIEVQGKMRNGVYRG-----QDNRYYSEYFGTLQVNDQFVDVVPFSGQYIPRKG 64
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D VIG+VIEV P W ++IN A+L ++ D R + +++ D +
Sbjct: 65 DKVIGKVIEVGPSTWTVDINSPYFAMLHMN-----DTPWRMSSG----DLKRYLNAGDYI 115
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD----PYLVKRRKQHFHHLEEY-GIDL 206
A++ S L + KLE G ++ + P ++ + + ++E +
Sbjct: 116 YAKIMSVNEIKESWLTLKEPGLKKLEGGHMVLIHASRVPRVIGKGGGMVNMVKELTATRI 175
Query: 207 IIGCNGYIWIGEHVEARDKMV-----VDQGSNSEQLIAKCDKNSMDL-DEQDGT 254
IIG NG IWI +E + +++ +++E L A+ + +L E+DG+
Sbjct: 176 IIGQNGLIWIDGPIEGVTMAIAAIEMIEREAHTEGLTARVESFLKELKGEKDGS 229
>sp|E3GZ90|ECR1_METFV Probable exosome complex RNA-binding protein 1 OS=Methanothermus
fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24
S) GN=Mfer_0823 PE=3 SV=1
Length = 222
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 50 LKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
+ G GT ++ ++ ++V G+V K I V L+ +Y P+ D VIG+V++V RW ++
Sbjct: 22 IAGRGTFIEEDKIYSSVVGLVSIKGKRIEVIPLQGKYIPKKNDSVIGKVVDVKFARWIVD 81
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
I AIL +S + I + + N+ IF D + ++ ++L
Sbjct: 82 IRSPYSAILPVSEV-----IDKGKK-----NLEEIFGIGDTLFLKIIEVDEVKKVKLGLH 131
Query: 170 NQKYGKLERGQLLTVDPY----LVKRRKQHFHHLEEY-GIDLIIGCNGYIWI 216
KLE G L + P ++ R+ L++ ++++G NG IW+
Sbjct: 132 EGGPIKLEGGTLAYITPSKVPRVIGRKGSMIKMLKKLTNCEILLGQNGVIWV 183
>sp|Q8TPX7|ECR1_METAC Probable exosome complex RNA-binding protein 1 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1777 PE=3 SV=1
Length = 260
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 52 GHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEIN 111
G+GT + ++ +++CG+ + V L Y P D+VIG VI V P W +I
Sbjct: 20 GYGTYVKNDKIYSSLCGIENLKEDKVGVIPLAGAYIPSANDVVIGIVIVVTPSNWIFDIA 79
Query: 112 FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171
D +L +S RR V+ M I D V V+ ++L R+
Sbjct: 80 APYDGLLHVSEY------PRR---VESREMPEILNVGDSVILRVKDVDSSMKVELALRDP 130
Query: 172 KYGKLERGQLLTVDPYLVKRRKQHFHHL-----EEYGIDLIIGCNGYIWI 216
KL+ GQ++ V+ V R H + +E + +G NG IWI
Sbjct: 131 SLHKLKTGQIIKVESVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI 180
>sp|Q6L222|ECR1_PICTO Probable exosome complex RNA-binding protein 1 OS=Picrophilus
torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 /
NBRC 100828) GN=PTO0395 PE=3 SV=1
Length = 230
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 14/177 (7%)
Query: 53 HGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINF 112
+G ++ E + GVV++ +K I + Y P D VIG+VI+V W ++IN
Sbjct: 22 NGLYEENDEYYSEYFGVVQKSDKFIDIVPFNGPYMPRINDKVIGKVIDVSATMWTVDINS 81
Query: 113 TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQK 172
S M++ D + ++R D + A+V L ++
Sbjct: 82 P-----YFSLMHMNDTPWHVTSG----DLRKYLNVGDYIYAKVSILNEIKESWLSLKDVN 132
Query: 173 YGKLERGQLLTVD----PYLVKRRKQHFHHLE-EYGIDLIIGCNGYIWIGEHVEARD 224
KLE G ++ + P ++ + + ++ E +I+G NG IWI E D
Sbjct: 133 LRKLEEGSIIYIKAPKVPRVIGKAGNMINMIKSETNTKIIVGQNGLIWIDGEPENVD 189
>sp|Q97BZ6|ECR1_THEVO Probable exosome complex RNA-binding protein 1 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV0309 PE=3 SV=1
Length = 236
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 67 CGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLP 126
G ++ ++ + V +Y P GD VIG++IEV P W ++IN A+L ++
Sbjct: 40 FGTLQVSDQYVDVVPFSGQYIPRKGDKVIGKIIEVGPSTWTVDINSPYFAMLHMNDTPW- 98
Query: 127 DGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVD- 185
+ +++ D V A++ S L + KLE G ++ +
Sbjct: 99 --------RISSGDLKRYLNSGDYVYAKIMSVNEIKESWLTLKEPGLKKLEGGHMVLIHA 150
Query: 186 ---PYLVKRRKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEA 222
P ++ + + ++E +IIG NG IWI +E
Sbjct: 151 SRVPRVIGKGGGMVNMVKELTSTRIIIGQNGLIWIDGPIEG 191
>sp|A9A5C8|ECR1_NITMS Probable exosome complex RNA-binding protein 1 OS=Nitrosopumilus
maritimus (strain SCM1) GN=Nmar_0431 PE=3 SV=1
Length = 226
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91
P VT G P ++ +L+G+ ++ +T G+ E + + V L +Y P+
Sbjct: 10 PGDVVTTGPFRP-EQNTVLEGN-------KIISTTIGISEIYDDSVRVIPLTGKYIPKIN 61
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA-VDELNMRSIFTENDL 150
D+VIG+V W+L+IN L D R +A DEL + DL
Sbjct: 62 DLVIGKVNSHTSLSWELDINSCYVGFLPAQ-----DVFGRDFSAHADELATK--LRTGDL 114
Query: 151 VCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR---RKQHFHHLEEYGID-- 205
V A + + + ++ GK++ G L+ + P V R +K + E D
Sbjct: 115 VAARIANFDRTRDPLVSISDRDLGKIDSGVLMEISPSKVPRLIGKKGSMIQMIEEATDAA 174
Query: 206 LIIGCNGYI 214
+ IG NG++
Sbjct: 175 VTIGQNGWV 183
>sp|D5U396|ECR1_THEAM Probable exosome complex RNA-binding protein 1 OS=Thermosphaera
aggregans (strain DSM 11486 / M11TL) GN=Tagg_1335 PE=3
SV=1
Length = 247
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 61 ELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILML 120
++ + + GVV + I V L Y P D+VIG V V W L+I +L
Sbjct: 45 KIISDLVGVVNVSGEDIQVIPLEGVYIPRKDDLVIGIVENVGVTAWTLDIRSPYPGVLNA 104
Query: 121 SSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQ 180
S + I+ + N+R+ D V + + + + GK+ G
Sbjct: 105 SEV-----IEGFNPLIH--NLRNYLDTGDFVIGRIALFDRTRDPVITVKGKGLGKITEGV 157
Query: 181 LLTVDPY----LVKRRKQHFHHLEEY-GIDLIIGCNGYIWIGEHVEARDKMVV 228
++ V P L+ +R ++ L G ++ I NG++W+ H E R K+++
Sbjct: 158 VVDVKPSKIPRLIGKRGSMYNLLTSMSGCEITIAQNGFVWLKCHDENRAKVLI 210
>sp|Q9YC02|ECR1_AERPE Probable exosome complex RNA-binding protein 1 OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=APE_1448 PE=1 SV=1
Length = 235
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 57 DQKGELAATVCGVVERINK---LIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFT 113
D KG ATV G++ +V+ L+ Y P+ GD+VIG + V W ++IN
Sbjct: 31 DYKGVKRATVVGLLREKGDGGGRAFVK-LKEIYVPQAGDVVIGLIQSVGIMNWFVDINSP 89
Query: 114 QDAILMLSSMNLPDGIQRR-RTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQK 172
A+L ++ D + R AVD +M+S+ D + A+V + S L + +
Sbjct: 90 YVAVL-----SVQDFLGRPFNPAVD--DMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGEG 142
Query: 173 YGKLERGQLLTVDPYLVKR 191
G++ RG+++ + P V R
Sbjct: 143 LGRIVRGKIVEISPAKVPR 161
>sp|Q08285|RRP40_YEAST Exosome complex component RRP40 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP40 PE=1 SV=2
Length = 240
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 24/152 (15%)
Query: 78 YVRALRARYKPETGDIVIGRVIEVVPKRWKLEI-NFTQDAILMLSSMNLPDGIQRRRTAV 136
Y+ RY P D VIG +I +K+ + NF+ + LS M P+ ++ R +
Sbjct: 56 YIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSS--VSLSYMAFPNASKKNRPTL 113
Query: 137 DELNMRSIFTENDLVCAEVRSSQGDGSLQLQ------ARNQKYGKLERGQLLTVDPYLVK 190
DLV A V +++ + +++ R+ +G LE G ++ V+ +
Sbjct: 114 Q---------VGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFAR 164
Query: 191 R--RKQHFHHLEEYG----IDLIIGCNGYIWI 216
+ F L+ ++ IG NG IW+
Sbjct: 165 QLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWV 196
>sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40 OS=Dictyostelium
discoideum GN=exosc3 PE=3 SV=1
Length = 237
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 52 GHGTSDQKGELAATVCGVV--ERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109
G G K + AT GV+ + ++ ++ + RY P+ D+VIG +IE + +K++
Sbjct: 26 GPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQKRYVPQVEDMVIGTIIEKHAESFKVD 85
Query: 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQAR 169
I + A+L S +G + + + +L+ V + D ++
Sbjct: 86 IGSSCSALLSAYSF---EGATKSN--------KPLLNVGNLIYCRVTVANRDMEPEVVCL 134
Query: 170 NQK-----YGKLERG-----------QLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGY 213
+QK +G+L G LL+ D +L++ +H + ++ +G NG
Sbjct: 135 SQKQKAEGFGQLIGGYMLNCSLGLSHYLLSEDCFLLQILGKHIPY------EIAVGVNGR 188
Query: 214 IWI 216
+WI
Sbjct: 189 VWI 191
>sp|Q975G7|ECR1_SULTO Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=STK_04440 PE=3 SV=1
Length = 247
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 13/157 (8%)
Query: 64 ATVCGVVERINKLIYVRALRA-RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSS 122
+++ G++E L + L RY P+ GD VIG + +V W L+I A L SS
Sbjct: 42 SSITGLIEVKENLFEIVPLEGHRYIPKVGDTVIGLIEDVEIYGWVLDIKSPYSAYLPASS 101
Query: 123 MNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLL 182
R ++R D V A++ + + L + + G++ G ++
Sbjct: 102 F-------LGRPVSPGEDLRRYLNLGDYVIAKIETYDRTINPILSIKGKGLGRVSSGIVI 154
Query: 183 TVDPYLVKR-----RKQHFHHLEEYGIDLIIGCNGYI 214
+ P V R R E G ++++ NG I
Sbjct: 155 DIPPVKVPRVIGKNRSMLDTLTSETGCEILVAQNGRI 191
>sp|Q4JB26|ECR1_SULAC Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_0611 PE=3 SV=1
Length = 249
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 9/160 (5%)
Query: 34 SCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIY--VRALRARYKPETG 91
S VT GD I E + G+ + + G++ + I+ + +RY P+ G
Sbjct: 13 SIVTPGDLIAEGEFQVPWSPYYYKVNGKYYSAITGLITVKDGSIFEVIPLESSRYYPKVG 72
Query: 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLV 151
D +IG V ++ W ++I A L SS+ R + E ++R D V
Sbjct: 73 DTIIGLVEDIEIYGWVIDIKSFYSAYLPASSL------LGRPISPGE-DVRRYLDVGDYV 125
Query: 152 CAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKR 191
A++ + S L + + G++ G ++ + P V R
Sbjct: 126 IAKIEAFDRTISPVLTVKGKGLGRIPLGTVMDIMPVKVPR 165
>sp|Q9UXC4|ECR1_SULSO Probable exosome complex RNA-binding protein 1 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0736 PE=1 SV=1
Length = 249
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Query: 64 ATVCGVVERINKLIYVRALRAR-YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSS 122
+TV G+ + + V L Y P+ DIVIG V +V W ++I A L S+
Sbjct: 45 STVVGLFDVKDTQFEVIPLEGSFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASN 104
Query: 123 MNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLL 182
+ R V E ++R D V A + + L + + G++ G ++
Sbjct: 105 L------LGRSINVGE-DLRRYLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVI 157
Query: 183 TVDPYLVKR----RKQHFHHL-EEYGIDLIIGCNGYIW 215
+ P V R K + L + G + + NG IW
Sbjct: 158 DIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANNGRIW 195
>sp|A4SPS7|DAPE_AERS4 Succinyl-diaminopimelate desuccinylase OS=Aeromonas salmonicida
(strain A449) GN=dapE PE=3 SV=1
Length = 375
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 43 PVYEDGILKGHGTSDQKGELAATVCGV 69
P +DG+L G G +D KG LAA V V
Sbjct: 85 PTIQDGVLYGRGAADMKGSLAAMVVAV 111
>sp|A0KIB5|DAPE_AERHH Succinyl-diaminopimelate desuccinylase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dapE
PE=3 SV=1
Length = 375
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 43 PVYEDGILKGHGTSDQKGELAATVCGV 69
P +DG+L G G +D KG LAA V V
Sbjct: 85 PTIQDGVLYGRGAADMKGSLAAMVVAV 111
>sp|Q5WVN0|PYRD_LEGPL Dihydroorotate dehydrogenase (quinone) OS=Legionella pneumophila
(strain Lens) GN=pyrD PE=3 SV=1
Length = 333
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 237 LIAKCDKNSMDLDE---------QDGTCTPREARQN----ICRIANAIRVLSRLGFNIT- 282
L A DKN LD + GT TP+ N + RIA A +++R+GFN +
Sbjct: 54 LAAGLDKNGEHLDALAKLGFSFIELGTVTPKGQTGNPKPRLFRIAEANAIINRMGFNNSG 113
Query: 283 VEVILETVNLSN 294
V+V++E V +N
Sbjct: 114 VDVLVENVKSAN 125
>sp|Q5ZUH7|PYRD_LEGPH Dihydroorotate dehydrogenase (quinone) OS=Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 /
DSM 7513) GN=pyrD PE=3 SV=2
Length = 333
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 237 LIAKCDKNSMDLDE---------QDGTCTPREARQN----ICRIANAIRVLSRLGFNIT- 282
L A DKN LD + GT TP+ N + RIA A +++R+GFN +
Sbjct: 54 LAAGLDKNGEHLDALAKLGFSFIELGTVTPKGQAGNPKPRLFRIAEANAIINRMGFNNSG 113
Query: 283 VEVILETVNLSN 294
V+V++E V +N
Sbjct: 114 VDVLVENVKRAN 125
>sp|A5ICX8|PYRD_LEGPC Dihydroorotate dehydrogenase (quinone) OS=Legionella pneumophila
(strain Corby) GN=pyrD PE=3 SV=1
Length = 333
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 237 LIAKCDKNSMDLDE---------QDGTCTPREARQN----ICRIANAIRVLSRLGFNIT- 282
L A DKN LD + GT TP+ N + RIA A +++R+GFN +
Sbjct: 54 LAAGLDKNGEHLDALAKLGFSFIELGTVTPKGQAGNPKPRLFRIAEANAIINRMGFNNSG 113
Query: 283 VEVILETVNLSN 294
V+V++E V +N
Sbjct: 114 VDVLVENVKRAN 125
>sp|Q5X496|PYRD_LEGPA Dihydroorotate dehydrogenase (quinone) OS=Legionella pneumophila
(strain Paris) GN=pyrD PE=3 SV=1
Length = 333
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 237 LIAKCDKNSMDLDE---------QDGTCTPREARQN----ICRIANAIRVLSRLGFNIT- 282
L A DKN LD + GT TP+ N + RIA A +++R+GFN +
Sbjct: 54 LAAGLDKNGEHLDALAKLGFSFIELGTVTPKGQAGNPKPRLFRIAEANAIINRMGFNNSG 113
Query: 283 VEVILETVNLSN 294
V+V++E V +N
Sbjct: 114 VDVLVENVKRAN 125
>sp|Q7N8V1|RAPA_PHOLL RNA polymerase-associated protein RapA OS=Photorhabdus luminescens
subsp. laumondii (strain TT01) GN=rapA PE=3 SV=1
Length = 970
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 155 VRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLII--GCNG 212
+R + D S ++AR+ E QL+ +R KQ F H+ E DL++ +
Sbjct: 225 LRFALFDDSRYIEARHDSDNPFETEQLVLCSLDFARRNKQRFEHMLEASWDLMVVDEAHH 284
Query: 213 YIWIGEHVEARDKMVVDQ 230
+W E +R+ VV+Q
Sbjct: 285 LVW-SEDAPSREYQVVEQ 301
>sp|Q253S7|Y689_CHLFF Maf-like protein CF0689 OS=Chlamydophila felis (strain Fe/C-56)
GN=CF0689 PE=3 SV=1
Length = 196
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 17 EKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI 73
E A+ + ES+ NP + DT+ +Y+ + G+ D+ E+ T+ G I
Sbjct: 49 ELAVGKAESIVQDHNPEGVILTADTVVIYKGKVFNKPGSHDEAIEMLKTLSGQTHSI 105
>sp|Q32K36|RAPA_SHIDS RNA polymerase-associated protein RapA OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=rapA PE=3 SV=1
Length = 968
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 167 QARNQKYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLII--GCNGYIWIGEHVEARD 224
+A++ Y + QL+ P V+R KQ HL E DL++ + +W E +R+
Sbjct: 237 EAQHDAYNPFDTEQLVICSPDFVRRSKQRLEHLCEAEWDLLVVDEAHHLVW-SEDAPSRE 295
Query: 225 KMVVDQ 230
++Q
Sbjct: 296 YQAIEQ 301
>sp|O13903|RRP40_SCHPO Exosome complex component rrp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp40 PE=3 SV=1
Length = 240
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 32/199 (16%)
Query: 39 GDTIP---VYEDGILK-GHG----TSDQKGELAATVCGVVERINK-LIYVRALRARYKPE 89
G+ IP + +DG ++ G G D++ E+ + G + + K + + + RY P
Sbjct: 16 GERIPDSIISQDGSIRLGPGLVFQKKDREEEIVVSKAGRLHQTGKNAMLIDSRTKRYIPA 75
Query: 90 TGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTEND 149
T D VIG++I + ++++I I L+++ + ++ R LN+ S
Sbjct: 76 TNDQVIGQIISRFAEGYRVDIGSAH--IAQLNALAFENVTRKSRP---NLNVGS------ 124
Query: 150 LVCAEVRSSQGDGSLQLQ------ARNQKYGKLERGQLLTVDPY-----LVKRRKQHFHH 198
LV A V + D +L+ + YG+L+ G ++T L+ +
Sbjct: 125 LVYARVSLADRDMEPELECFDATTGKAAGYGELKNGYMITGLSLSHCRKLILPKNTLLQT 184
Query: 199 LEEY-GIDLIIGCNGYIWI 216
L Y ++ +G NG +W+
Sbjct: 185 LGSYIPFEIAVGMNGRVWV 203
>sp|A3RGC1|VDR_PIG Vitamin D3 receptor OS=Sus scrofa GN=VDR PE=2 SV=1
Length = 427
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 195 HFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQDGT 254
H L Y I +IG I + A D++V+ + S E ++ + ++ S +D+ T
Sbjct: 229 HLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIVLLKSSAIEVIMLRSNQ-SFTMDDMSWT 287
Query: 255 CTPREARQNICRIANAIRVLSRLGFNITVEVILETVNL 292
C R+ + + +A A L + I +V L+ +NL
Sbjct: 288 CGSRDYKYQVSDVAKAGHSLELIEPLIKFQVGLKKLNL 325
>sp|Q5L6G5|Y310_CHLAB Maf-like protein CAB310 OS=Chlamydophila abortus (strain S26/3)
GN=CAB310 PE=3 SV=1
Length = 196
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 17 EKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCG 68
E A+ + ES+ NP + DT+ Y+ I G+ D+ E+ T+ G
Sbjct: 49 ELAIGKAESIVKDHNPEGLILTADTVVAYQGKIFNKPGSYDEAIEMLKTLSG 100
>sp|Q8UEQ3|SURE_AGRT5 5'-nucleotidase SurE OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=surE PE=3 SV=1
Length = 256
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 3 NLQLSFNQTQKVRLEKALERLESLSSKSNPNSCVTVG--DTIPVYEDGILKGHGTSDQKG 60
L S ++ +RL K ++ +L + P CV +G + +P D +L G
Sbjct: 41 GLAHSLTLSEPLRLRKVSDKHFAL--RGTPTDCVIMGIREVLPEKPDLVLSGVNAGANMA 98
Query: 61 E---LAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAI 117
+ + T+ G +E + + AL + G VVP W++ + D +
Sbjct: 99 DDVTYSGTIAGAIEGTLQGVRSFALSQAFSHGEG--------RVVP--WEVAETYAPDLL 148
Query: 118 LMLSSMNLPDG 128
L +++LPDG
Sbjct: 149 RKLMNVDLPDG 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,292,124
Number of Sequences: 539616
Number of extensions: 4657415
Number of successful extensions: 12668
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 12611
Number of HSP's gapped (non-prelim): 57
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)