Query 020356
Match_columns 327
No_of_seqs 246 out of 961
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nn6_H Exosome complex exonucl 100.0 1.2E-66 4E-71 498.9 23.0 287 12-321 18-304 (308)
2 2nn6_G Exosome complex exonucl 100.0 1.6E-44 5.5E-49 343.0 15.2 182 28-220 34-257 (289)
3 2ba0_A Archeal exosome RNA bin 100.0 8.3E-44 2.8E-48 328.2 16.1 177 33-220 2-183 (229)
4 2z0s_A Probable exosome comple 100.0 2.2E-43 7.6E-48 326.2 14.7 181 32-220 8-195 (235)
5 2je6_I RRP4, exosome complex R 100.0 5.1E-43 1.8E-47 327.0 14.5 182 31-221 14-203 (251)
6 2ja9_A Exosome complex exonucl 100.0 6E-34 2.1E-38 253.0 13.5 125 84-219 1-138 (175)
7 3m7n_A Putative uncharacterize 100.0 1.6E-30 5.4E-35 231.2 14.9 128 34-177 2-140 (179)
8 2nn6_I 3'-5' exoribonuclease C 100.0 8.8E-30 3E-34 231.8 9.0 138 31-177 17-169 (209)
9 2k52_A Uncharacterized protein 98.9 9.8E-09 3.3E-13 79.0 10.1 71 87-171 2-73 (80)
10 2k4k_A GSP13, general stress p 98.8 3.2E-08 1.1E-12 83.2 9.4 74 87-170 4-78 (130)
11 1kl9_A Eukaryotic translation 98.8 2.7E-08 9.2E-13 88.5 9.4 77 85-171 10-89 (182)
12 2eqs_A ATP-dependent RNA helic 98.7 4.1E-08 1.4E-12 79.2 9.2 76 85-170 7-85 (103)
13 2khi_A 30S ribosomal protein S 98.7 5.3E-08 1.8E-12 79.9 9.4 88 75-171 14-103 (115)
14 1go3_E DNA-directed RNA polyme 98.7 3.6E-08 1.2E-12 87.1 8.7 85 86-177 77-174 (187)
15 2cqo_A Nucleolar protein of 40 98.7 3.7E-08 1.3E-12 81.7 8.1 77 85-171 17-97 (119)
16 2khj_A 30S ribosomal protein S 98.7 5E-08 1.7E-12 79.2 8.6 77 85-171 26-103 (109)
17 2a19_A EIF-2- alpha, eukaryoti 98.7 6.3E-08 2.1E-12 85.5 9.6 77 85-171 10-89 (175)
18 3aev_A Translation initiation 98.6 9.7E-08 3.3E-12 89.9 10.2 81 81-171 2-85 (275)
19 1luz_A Protein K3, protein K2; 98.5 2E-07 6.8E-12 73.4 7.9 74 85-170 5-83 (88)
20 4ayb_E DNA-directed RNA polyme 98.5 3.7E-07 1.3E-11 80.1 9.2 90 85-177 76-173 (180)
21 1q8k_A Eukaryotic translation 98.4 4.9E-07 1.7E-11 86.4 9.2 76 86-171 9-87 (308)
22 3cw2_C Translation initiation 98.4 3.3E-07 1.1E-11 85.9 7.2 80 83-172 4-86 (266)
23 1wi5_A RRP5 protein homolog; S 98.4 7.6E-07 2.6E-11 73.2 8.2 82 87-176 18-100 (119)
24 2c35_B Human RPB7, DNA-directe 98.3 1.2E-06 4E-11 76.5 8.0 89 85-177 76-172 (172)
25 1y14_B B16, RPB7, DNA-directed 98.3 1.9E-06 6.6E-11 75.2 7.9 82 86-176 79-171 (171)
26 3h0g_G DNA-directed RNA polyme 98.1 1.4E-06 4.8E-11 76.3 4.5 86 85-176 79-172 (172)
27 2b8k_G B16, DNA-directed RNA p 98.1 4.2E-06 1.4E-10 76.1 7.0 85 86-177 79-172 (215)
28 3go5_A Multidomain protein wit 98.0 1.7E-05 5.8E-10 74.9 8.9 70 89-176 151-222 (285)
29 4aid_A Polyribonucleotide nucl 97.8 2.2E-06 7.6E-11 90.2 0.0 76 86-171 633-708 (726)
30 3ayh_B DNA-directed RNA polyme 97.8 7.8E-05 2.7E-09 66.9 9.0 90 86-177 77-200 (203)
31 3psi_A Transcription elongatio 97.5 0.00011 3.7E-09 81.3 7.6 77 86-171 898-975 (1219)
32 3bzc_A TEX; helix-turn-helix, 97.4 6.4E-05 2.2E-09 79.8 4.1 76 87-172 651-727 (785)
33 3cdi_A Polynucleotide phosphor 97.4 2.3E-05 7.7E-10 82.6 0.0 76 86-171 623-698 (723)
34 3psf_A Transcription elongatio 97.3 3.5E-05 1.2E-09 83.9 0.0 78 87-173 902-980 (1030)
35 1e3p_A Guanosine pentaphosphat 97.2 2.7E-05 9.1E-10 82.4 -1.6 76 86-171 663-742 (757)
36 1hh2_P NUSA, N utilization sub 97.1 0.00087 3E-08 64.9 7.3 69 85-170 129-200 (344)
37 2asb_A Transcription elongatio 97.0 0.00078 2.7E-08 62.6 5.8 71 85-171 2-82 (251)
38 2bx2_L Ribonuclease E, RNAse E 96.7 0.011 3.9E-07 59.9 11.8 83 86-169 41-126 (517)
39 1k0r_A NUSA; two component arr 96.6 0.002 6.9E-08 62.8 5.8 69 85-169 125-203 (366)
40 2ckz_B C25, DNA-directed RNA p 96.4 0.0072 2.5E-07 54.8 7.7 75 85-160 76-155 (218)
41 3go5_A Multidomain protein wit 96.3 0.015 5E-07 54.8 9.6 67 89-170 68-136 (285)
42 2bh8_A 1B11; transcription, mo 92.8 0.065 2.2E-06 42.6 3.1 38 87-124 58-95 (101)
43 3d0f_A Penicillin-binding 1 tr 92.7 0.87 3E-05 36.0 9.6 64 86-154 29-93 (106)
44 2id0_A Exoribonuclease 2; RNAs 91.9 0.37 1.3E-05 49.9 8.2 78 87-168 555-642 (644)
45 2vnu_D Exosome complex exonucl 87.3 0.83 2.8E-05 48.3 6.6 77 88-169 668-760 (760)
46 2wp8_J Exosome complex exonucl 84.5 1.4 4.8E-05 47.9 6.8 81 88-169 885-977 (977)
47 2rf4_A DNA-directed RNA polyme 79.3 4.1 0.00014 36.3 6.8 72 85-162 124-203 (214)
48 3v2d_0 50S ribosomal protein L 65.3 10 0.00035 29.4 5.0 53 30-82 25-84 (85)
49 2zjr_T 50S ribosomal protein L 62.9 9.7 0.00033 29.9 4.6 54 29-82 24-84 (91)
50 3fyr_A Sporulation inhibitor S 57.8 16 0.00053 25.5 4.4 36 280-322 5-40 (48)
51 3r8s_W 50S ribosomal protein L 57.3 13 0.00043 28.3 4.2 53 29-81 15-75 (76)
52 1y71_A Kinase-associated prote 46.2 23 0.0008 29.4 4.5 25 88-112 8-41 (130)
53 2bh8_A 1B11; transcription, mo 45.9 68 0.0023 24.8 7.1 58 90-160 13-74 (101)
54 2ftc_O L27MT, MRP-L27, mitocho 35.4 30 0.001 25.8 3.2 42 30-71 25-68 (69)
55 3i4o_A Translation initiation 35.0 1E+02 0.0034 23.3 6.2 51 94-158 16-67 (79)
56 2oqk_A Putative translation in 32.7 87 0.003 25.1 5.9 55 86-156 27-82 (117)
57 3pr9_A FKBP-type peptidyl-prol 28.0 61 0.0021 27.2 4.4 43 74-116 85-136 (157)
58 1kca_A Repressor protein CI; g 26.4 1.8E+02 0.0062 22.2 6.7 30 73-102 70-102 (109)
59 1ix5_A FKBP; ppiase, isomerase 23.4 71 0.0024 26.4 3.9 30 87-116 103-137 (151)
60 1yez_A MM1357; MAR30, autostru 22.6 2E+02 0.007 20.1 5.9 22 89-110 45-66 (68)
61 3prb_A FKBP-type peptidyl-prol 21.9 86 0.0029 28.2 4.4 42 75-116 86-136 (231)
No 1
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=1.2e-66 Score=498.88 Aligned_cols=287 Identities=40% Similarity=0.588 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceEecCCccCCCCCceeecCCEEeeCCeEEEEEeeEEEEECcEEEEEecCCccCCCCC
Q 020356 12 QKVRLEKALERLESLSSKSNPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETG 91 (327)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~iV~PGD~I~~~ee~~~~G~Gty~~~g~i~Ssv~G~v~~~nk~v~V~pl~~rY~P~vG 91 (327)
.+.|+.+|++++..+++...+..+|+|||.|+..++ |++|+|||..+|+|+||++|.+..+++++||+|++++|.|++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~iVlPGd~L~~~~~-~~~G~Gty~~~g~I~Asv~G~v~~~~~~vsV~p~~~rY~P~vG 96 (308)
T 2nn6_H 18 MEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTG-FMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVG 96 (308)
T ss_dssp ----------------------CBCCTTCBCCCCTT-CCBCTTEEECSSSEEECSSEEEEEETTEEEEEESSCCCCCCSS
T ss_pred ccccchhhhhccccccccCCCCcEEeCCCCCCCCCC-EeecCCeEEECCEEEEEEEEEEEecCCEEEEeeCCCccCCCCC
Confidence 488999999999999988899999999999986555 9999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCCceEEEEccC
Q 020356 92 DIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQ 171 (327)
Q Consensus 92 DiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g~i~Lstr~~ 171 (327)
|+|+|+|+++++++|+|||+++.++.+|+|+++|||+++|++...|+.+|+++|++||+|+|||+++++++++.||||++
T Consensus 97 DvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~LStr~~ 176 (308)
T 2nn6_H 97 DIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSL 176 (308)
T ss_dssp BCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEEECCSS
T ss_pred CEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEEEecCc
Confidence 99999999999999999999999999999999999999988888888999999999999999999999889999999999
Q ss_pred CCccCCCCeEEEeChhhhhhccccccccCccceEEEEeecceeeeccccccccccccccCCCchhhhhhccCCCCccccC
Q 020356 172 KYGKLERGQLLTVDPYLVKRRKQHFHHLEEYGIDLIIGCNGYIWIGEHVEARDKMVVDQGSNSEQLIAKCDKNSMDLDEQ 251 (327)
Q Consensus 172 ~lGkL~~G~lv~V~~~li~r~~~h~~~L~~~~~eiivG~NG~IWI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (327)
+||+|++|+++.|++.+++|+++|++.|. |+|+|++|+||||||++.....+ +..+ .++ +
T Consensus 177 ~LGkL~~G~v~~vs~~lv~r~~~~l~~l~-~g~eI~vG~NG~IWi~~~~~~~~-------~~~~---~~~---------~ 236 (308)
T 2nn6_H 177 KYGKLGQGVLVQVSPSLVKRQKTHFHDLP-CGASVILGNNGFIWIYPTPEHKE-------EEAG---GFI---------A 236 (308)
T ss_dssp TTCEECSSCEEECCTTSCCCSTTCSCCCB-TTBEEEEETTTEEEEECCCCC----------------CCG---------G
T ss_pred CCcccCCeEEEEEChhheechhheEecCC-CCcEEEEeCCCEEEEcCCcchhh-------hhcc---ccc---------c
Confidence 99999999999999999999999999985 99999999999999997643211 0000 011 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhhCCCCchhcccchHHHHHHHHHHHHhh
Q 020356 252 DGTCTPREARQNICRIANAIRVLSRLGFNITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRS 321 (327)
Q Consensus 252 ~~~~~~~~~r~~i~r~~n~i~~l~~~~~~i~~~~i~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (327)
+.++++.++|++|||++|||++|++++++||+++|+++|++|+++ +++|||.||++..+++.+++|=.
T Consensus 237 ~~~~~~~~~r~~i~r~~n~i~~l~~~~~~i~~~~i~~~~~~s~~~--~~~~~l~~~~~~~~~~~~~~~~~ 304 (308)
T 2nn6_H 237 NLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLPH--QIKDILKPEIMEEIVMETRQRLL 304 (308)
T ss_dssp GSSCCCHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTHHHH--CCSSCCTTHHHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhC--CHHHhccHHHHHHHHHHHHHHHH
Confidence 124699999999999999999999999999999999999999655 99999999999999999998743
No 2
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=1.6e-44 Score=342.97 Aligned_cols=182 Identities=21% Similarity=0.352 Sum_probs=153.0
Q ss_pred CCCCCCceEecCCccCCCC-C---------------------ceee--cCCEEeeCCeEEEEEeeEEEEECc-------E
Q 020356 28 SKSNPNSCVTVGDTIPVYE-D---------------------GILK--GHGTSDQKGELAATVCGVVERINK-------L 76 (327)
Q Consensus 28 ~~~~~~~iV~PGD~I~~~e-e---------------------~~~~--G~Gty~~~g~i~Ssv~G~v~~~nk-------~ 76 (327)
|....+.+|+|||.|+..+ + .|++ |+|||..+++|+|+++|.++.+++ +
T Consensus 34 ~~~~~~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~~~~~I~as~aG~l~~~~~~~~~~~~~ 113 (289)
T 2nn6_G 34 ARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGV 113 (289)
T ss_dssp CTGGGSSBCCSSEEECCSCSCCEECSSEEECC-----------------------CCCEEECSCCEEEEECCTTTSSCCE
T ss_pred HhhcCCcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEEECCEEEEEEeEeEEeccCCccCccce
Confidence 4455678999999998654 0 4888 999999999999999999998765 7
Q ss_pred EEEEecCCccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEE
Q 020356 77 IYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVR 156 (327)
Q Consensus 77 v~V~pl~~rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~ 156 (327)
+||+|++++|+|++||+|||+|+++++++|+|||++++.|.|++++ |||+++ +|+++|++||+|+|||+
T Consensus 114 v~V~~~~~rYiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~--f~Gatk---------~~r~~f~~GDlV~ArV~ 182 (289)
T 2nn6_G 114 YWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLS--FEGATK---------RNRPNVQVGDLIYGQFV 182 (289)
T ss_dssp EEEECCCSSCCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCS--SSCCSS---------CSSSSSCTTCEEEEEEE
T ss_pred EEEEecCCCCCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhh--cCcchh---------hhhhhcCCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999998874 888764 46788999999999999
Q ss_pred ecCCCCceEEEE-----ccCCCccC-CCCeEEEeChhhhhhcccccc----ccC-ccceEEEEeecceeeecccc
Q 020356 157 SSQGDGSLQLQA-----RNQKYGKL-ERGQLLTVDPYLVKRRKQHFH----HLE-EYGIDLIIGCNGYIWIGEHV 220 (327)
Q Consensus 157 sv~~~g~i~Lst-----r~~~lGkL-~~G~lv~V~~~li~r~~~h~~----~L~-~~~~eiivG~NG~IWI~~~~ 220 (327)
+++++++++||| |+.+||+| .+|++++|+|++++|+..|.+ .|. .++|+|+||+||||||++.+
T Consensus 183 s~~~~~~~eLsc~~~~~k~~~lG~L~~~G~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG~IWI~~~~ 257 (289)
T 2nn6_G 183 VANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGRIWVKAKT 257 (289)
T ss_dssp ECCTTSCCEEECSBTTTTBCCCCSCCSSCEEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEETTTEEEECCSS
T ss_pred EcCCCCceEEEecccccccccCCEecCCeEEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEECCcEEEEecCC
Confidence 999999999999 99999999 999999999999999987643 343 68999999999999998754
No 3
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=8.3e-44 Score=328.21 Aligned_cols=177 Identities=23% Similarity=0.405 Sum_probs=161.0
Q ss_pred CceEecCCccCCCCCceeecCCEEeeCCeEEEEEeeEEEEECcEEEEEecCCccCCCCCCEEEEEEEEEecceEEEEEcC
Q 020356 33 NSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRARYKPETGDIVIGRVIEVVPKRWKLEINF 112 (327)
Q Consensus 33 ~~iV~PGD~I~~~ee~~~~G~Gty~~~g~i~Ssv~G~v~~~nk~v~V~pl~~rY~P~vGDiVIGrV~~V~~~~w~VDI~s 112 (327)
..+|+|||.|+ .+ .|++|+|||..+|+|+||++|.+..+++.++|+|++++|.|++||+|+|+|+++++++|+|||++
T Consensus 2 ~~iV~PGd~l~-~~-~~~~G~Gty~~~g~i~as~~G~v~~~~~~v~V~p~~~~y~p~~GDiV~G~V~~v~~~~a~V~I~~ 79 (229)
T 2ba0_A 2 RKIVLPGDLLS-TN-PRAAGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVVIGIIREVAANGWAVDIYS 79 (229)
T ss_dssp CCEECTTCEEE-SC-TTSBCTTEEEETTEEEECSSEEEEECSSCEEEEECSSSCCCCTTCEEEEEEEEECSSEEEEECSS
T ss_pred CCEEcCCCCcc-cC-CeEecCCEEEeCCEEEEEEEEEEEEeCCEEEEEeCCCcccCCCCCEEEEEEEEEeCCeEEEEeCC
Confidence 36899999997 34 49999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCCceEEEEccCCCccCCCCeEEEeChhhhhhc
Q 020356 113 TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLVKRR 192 (327)
Q Consensus 113 ~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g~i~Lstr~~~lGkL~~G~lv~V~~~li~r~ 192 (327)
+++|+||++++.. +. +..+|+++|++||+|+|+|+++++++++.||||+.+||+|.+|++++++|.+++|+
T Consensus 80 ~~~g~l~isev~~-------~~--~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~lG~L~~G~v~~vs~~~v~rl 150 (229)
T 2ba0_A 80 PYQAFLPVSENPE-------MK--PNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRICRPIRFGRIVAINPARVPRV 150 (229)
T ss_dssp SSCEEEEGGGCTT-------CC--TTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSSCEEESSSEEEECCGGGHHHH
T ss_pred CeEEEEEHHHccc-------cc--cccchhcccCCCCEEEEEEEEECCCCcEEEEEccccCCcccCCEEEEECHHHhHHH
Confidence 9999999998861 11 12389999999999999999999999999999999999999999999999999997
Q ss_pred c----ccccccC-ccceEEEEeecceeeecccc
Q 020356 193 K----QHFHHLE-EYGIDLIIGCNGYIWIGEHV 220 (327)
Q Consensus 193 ~----~h~~~L~-~~~~eiivG~NG~IWI~~~~ 220 (327)
. +|+++|. .++|+|++|+||+|||++.+
T Consensus 151 ~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~ 183 (229)
T 2ba0_A 151 IGKKGSMIKLLKSELDVQIVVGQNGLIWVNGDR 183 (229)
T ss_dssp HCGGGHHHHHHHHHHTCEEEECTTSEEEEESCH
T ss_pred hcCCchHHHHhcccCCeEEEEECCcEEEEeCCc
Confidence 4 4677774 68999999999999999653
No 4
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=2.2e-43 Score=326.19 Aligned_cols=181 Identities=24% Similarity=0.311 Sum_probs=120.0
Q ss_pred CCceEecCCccCCCCCceeecCCEEeeCCeEEEEEeeEEEEECc--EEEEEecCCccCCCCCCEEEEEEEEEecceEEEE
Q 020356 32 PNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINK--LIYVRALRARYKPETGDIVIGRVIEVVPKRWKLE 109 (327)
Q Consensus 32 ~~~iV~PGD~I~~~ee~~~~G~Gty~~~g~i~Ssv~G~v~~~nk--~v~V~pl~~rY~P~vGDiVIGrV~~V~~~~w~VD 109 (327)
...+|+|||.|+. ++ |++|+|||..+|+|+||++|.+...++ .+||+|++++|.|++||+|+|+|+++++++|+||
T Consensus 8 ~~~iV~PGd~l~~-~~-~~~G~Gty~~~~~I~Asv~G~v~~~~~~~~vsV~p~~~~y~p~~GDiV~G~V~~v~~~~~~V~ 85 (235)
T 2z0s_A 8 AGRIVVPGEPLPE-EV-EASPPYVIDYKGVKRATVVGLLREKGDGGGRAFVKLKEIYVPQAGDVVIGLIQSVGIMNWFVD 85 (235)
T ss_dssp ------------------------------------------------------CCCCCCTTCCEEEEEEEECSSEEEEE
T ss_pred CCcEEeCCCCccc-Cc-eEcCCCEEEECCEEEEEEeEEEEEeCCccEEEEEeCCCccCCCCCCEEEEEEEEEeCCeEEEE
Confidence 3579999999973 43 999999999999999999999998776 8999999999999999999999999999999999
Q ss_pred EcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCCceEEEEccCCCccCCCCeEEEeChhhh
Q 020356 110 INFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPYLV 189 (327)
Q Consensus 110 I~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g~i~Lstr~~~lGkL~~G~lv~V~~~li 189 (327)
|+++++|+||++++. + ++.+.+..+|+++|++||+|+|+|+++++++.+.||||+..||+|++|++++++|.++
T Consensus 86 I~~~~~g~l~isei~--~----~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~~~lG~l~gG~vv~vs~~~~ 159 (235)
T 2z0s_A 86 INSPYVAVLSVQDFL--G----RPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGEGLGRIVRGKIVEISPAKV 159 (235)
T ss_dssp CSSSSCEEEEHHHHH--T----SCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSSSCEECCSSEEEECCGGGS
T ss_pred eCCCeEEEEEHHHhC--C----CccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEecccCccccCCEEEEECHHHh
Confidence 999999999999875 2 2334456699999999999999999999888999999999999999999999999999
Q ss_pred hhcc----ccccccC-ccceEEEEeecceeeecccc
Q 020356 190 KRRK----QHFHHLE-EYGIDLIIGCNGYIWIGEHV 220 (327)
Q Consensus 190 ~r~~----~h~~~L~-~~~~eiivG~NG~IWI~~~~ 220 (327)
+|+. +|+++|. +++|++++|+||+|||++..
T Consensus 160 ~rl~~~~~~~l~~l~~~~~~~i~vG~NG~IWi~~~~ 195 (235)
T 2z0s_A 160 PRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPN 195 (235)
T ss_dssp GGGTCGGGHHHHHHHHHHCCEEEEETTTEEEEECSC
T ss_pred HHHhcCcchHHHHhcccCCeEEEEeCCCEEEEecCC
Confidence 9986 4888885 68999999999999998753
No 5
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=100.00 E-value=5.1e-43 Score=326.98 Aligned_cols=182 Identities=23% Similarity=0.331 Sum_probs=158.7
Q ss_pred CCCceEecCCccCCCCCceeecC--CEEeeCCeEEEEEeeEEEEECcEEEEEecCC-ccCCCCCCEEEEEEEEEecceEE
Q 020356 31 NPNSCVTVGDTIPVYEDGILKGH--GTSDQKGELAATVCGVVERINKLIYVRALRA-RYKPETGDIVIGRVIEVVPKRWK 107 (327)
Q Consensus 31 ~~~~iV~PGD~I~~~ee~~~~G~--Gty~~~g~i~Ssv~G~v~~~nk~v~V~pl~~-rY~P~vGDiVIGrV~~V~~~~w~ 107 (327)
+...+|+|||.|+. ++ |++|+ |||..+|+|+||++|.+..+++.++|+|+++ +|.|++||+|+|+|+++++++|+
T Consensus 14 ~~~~iV~PGd~l~~-~~-~~~G~~~Gty~~~g~i~as~~G~v~~~~~~v~V~p~~~~~y~p~~GDiV~G~V~~v~~~ga~ 91 (251)
T 2je6_I 14 QPRSIVVPGELLAE-GE-FQIPWSPYILKINSKYYSTVVGLFDVKDTQFEVIPLEGSFYYPKINDIVIGLVEDVEIYGWV 91 (251)
T ss_dssp CSSCEECTTCEEEE-EC-CCCCCCTTEEEETTEEEECSSEEEEEETTEEEEEESCCSCCCCCTTCEEEEEEEEECSSEEE
T ss_pred CCCcEEcCCCCCcc-CC-eeeCCCCCEEEECCEEEEEEEEEEEEeCCEEEEEECCCcccCCCCCCEEEEEEEEEeCceEE
Confidence 45789999999983 43 99999 9999999999999999999999999999998 99999999999999999999999
Q ss_pred EEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCCceEEEEccCCCccCCCCeEEEeChh
Q 020356 108 LEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLERGQLLTVDPY 187 (327)
Q Consensus 108 VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g~i~Lstr~~~lGkL~~G~lv~V~~~ 187 (327)
|||+++++|+||++++. + .+ ...| .+|+++|++||+|+|+|+++++++.+.||||+.+||+|.+|++++++|.
T Consensus 92 VdI~~~~~GlL~isei~--~--~~--~~~~-~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~~lG~L~~G~v~~vs~~ 164 (251)
T 2je6_I 92 VDIKAPYKAYLPASNLL--G--RS--INVG-EDLRRYLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVIDIMPV 164 (251)
T ss_dssp EECSSSSCEEEEHHHHH--T--SC--CCTT-CCCSSSCCTTCEEEEEEEEEETTEEEEEECCSTTCEECCSSCEEECCGG
T ss_pred EEcCCCeEEEEEHHHhc--C--Cc--cccc-cchhhcCCCCCEEEEEEEEECCCCcEEEEEccccCCcccCCEEEEECHH
Confidence 99999999999999875 2 12 2233 6999999999999999999998899999999999999999999999999
Q ss_pred hhhhc----cccccccC-ccceEEEEeecceeeeccccc
Q 020356 188 LVKRR----KQHFHHLE-EYGIDLIIGCNGYIWIGEHVE 221 (327)
Q Consensus 188 li~r~----~~h~~~L~-~~~~eiivG~NG~IWI~~~~~ 221 (327)
+++|+ .+|+++|. .++|+||||+||||||++.+.
T Consensus 165 ~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~~~ 203 (251)
T 2je6_I 165 KVPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSR 203 (251)
T ss_dssp GHHHHHCGGGHHHHHHHTTC---CEECTTSEEEC-----
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEEECCcEEEEeCCCH
Confidence 99997 35788884 789999999999999997643
No 6
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=6e-34 Score=252.97 Aligned_cols=125 Identities=25% Similarity=0.474 Sum_probs=114.1
Q ss_pred CccCCCCCCEEEEEEEEEecceEEEEEcC-ccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCC
Q 020356 84 ARYKPETGDIVIGRVIEVVPKRWKLEINF-TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDG 162 (327)
Q Consensus 84 ~rY~P~vGDiVIGrV~~V~~~~w~VDI~s-~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g 162 (327)
+||.|++||+|+|+|+++.+++|+|||++ +++|.||++ +|||+++ +|+.+|++||+|+|||++++.++
T Consensus 1 krY~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s--~~~g~~k---------~~r~~l~~GDlV~ArV~~~~~~~ 69 (175)
T 2ja9_A 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYM--AFPNASK---------KNRPTLQVGDLVYARVCTAEKEL 69 (175)
T ss_dssp CCCCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETT--SSTTCCS---------SSCCCCCTTCEEEEEEEECCTTS
T ss_pred CCccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHH--HCCchhh---------hhhccCCCCCEEEEEEEEecCCC
Confidence 58999999999999999999999999999 999999988 4777754 46777999999999999999999
Q ss_pred ceEEE------EccCCCccCCCCeEEEeChhhhhhcc--ccccccC----ccceEEEEeecceeeeccc
Q 020356 163 SLQLQ------ARNQKYGKLERGQLLTVDPYLVKRRK--QHFHHLE----EYGIDLIIGCNGYIWIGEH 219 (327)
Q Consensus 163 ~i~Ls------tr~~~lGkL~~G~lv~V~~~li~r~~--~h~~~L~----~~~~eiivG~NG~IWI~~~ 219 (327)
+++|| +|+++||+|++|++++|+|++++|+. .|+++|+ .++|+|++|+||||||++.
T Consensus 70 ~~~Ltc~~~~~~r~~~lG~L~~G~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~ 138 (175)
T 2ja9_A 70 EAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCE 138 (175)
T ss_dssp CCEEESSCTTTCSCTTCEEECSCEEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETTTEEEEECS
T ss_pred ceEEEecccccccccCCcCcCCCEEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECCcEEEEecC
Confidence 99999 89999999999999999999999986 4776663 6899999999999999874
No 7
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.97 E-value=1.6e-30 Score=231.22 Aligned_cols=128 Identities=26% Similarity=0.378 Sum_probs=117.7
Q ss_pred ceEecCCccCCCCCceeecCCEEeeCCeEEEEEeeEEEEECcEEEEEecCC-ccCCCCCCEEEEEEEEEecceEEEEEcC
Q 020356 34 SCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERINKLIYVRALRA-RYKPETGDIVIGRVIEVVPKRWKLEINF 112 (327)
Q Consensus 34 ~iV~PGD~I~~~ee~~~~G~Gty~~~g~i~Ssv~G~v~~~nk~v~V~pl~~-rY~P~vGDiVIGrV~~V~~~~w~VDI~s 112 (327)
++|+|||.|+..++ |++|||||..+|+|+||++|.++.+++++||+|+++ +|.|+ ||+|+|+|+++++++|+|||++
T Consensus 2 ~iV~PGd~l~~~~~-~~~G~Gty~~~~~i~as~~G~v~~~~~~v~V~~~~~~~y~p~-GdiV~G~V~~V~~~ga~V~I~~ 79 (179)
T 3m7n_A 2 RFVMPGDRIGSAEE-YVKGEGVYEEGGELFAAVAGKLIIKDRVAKVESISPIPEIVK-GDVVLGRVVDLRNSIALIEVSS 79 (179)
T ss_dssp CEECTTCEEEETTT-SEECTTEEEETTEEEESSSEEEEEETTEEEEEESSCCCCCCT-TCEEEEEEEEECSSEEEEEEEE
T ss_pred eEEcCCCCCCCCCC-EeccCCEEEeCCEEEEEEEEEEEEeCCEEEEEECCCCcccCC-CCEEEEEEEEEeCCcEEEEEcc
Confidence 69999999987665 999999999999999999999999999999999966 69999 9999999999999999999998
Q ss_pred ----------ccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCCceEEEEccCCCccCC
Q 020356 113 ----------TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQLQARNQKYGKLE 177 (327)
Q Consensus 113 ----------~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g~i~Lstr~~~lGkL~ 177 (327)
+.+|+||+|++. . .+.+ +|+++|++||+|.|+|++ +.+.||||+++||+|.
T Consensus 80 v~~~~~~~~~~~~Gll~isei~------~--~~~~--~~~~~~~~GD~V~akVi~----~~i~LS~k~~~lGvv~ 140 (179)
T 3m7n_A 80 KKGENRGPSNRGIGILHVSNVD------E--GYVK--EISEAVGYLDILKARVIG----DNLRLSTKEEEMGVLR 140 (179)
T ss_dssp ETTCCSCCTTCEEEEEEGGGTT------S--SCCS--SGGGTCCTTCEEEEEEEE----TTTEEECCSTTCEEEE
T ss_pred ccCcccccccCeeEEEEHHHcC------c--chhh--CHhhcCCCCCEEEEEEEC----CeEEEEEecCCCCEEE
Confidence 899999999885 1 1223 899999999999999998 7899999999999995
No 8
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.96 E-value=8.8e-30 Score=231.79 Aligned_cols=138 Identities=19% Similarity=0.259 Sum_probs=115.7
Q ss_pred CCCceEecCCccCCCCCceeecCCEEeeCCeEEEEEeeEEEEE-----CcEEEEEecCC-ccCCCCCCEEEEEEEEEecc
Q 020356 31 NPNSCVTVGDTIPVYEDGILKGHGTSDQKGELAATVCGVVERI-----NKLIYVRALRA-RYKPETGDIVIGRVIEVVPK 104 (327)
Q Consensus 31 ~~~~iV~PGD~I~~~ee~~~~G~Gty~~~g~i~Ssv~G~v~~~-----nk~v~V~pl~~-rY~P~vGDiVIGrV~~V~~~ 104 (327)
+...+|+|||.|+..++ |++|+|||+.+|+||||++|.+.++ +++++|+|+++ +|.|++||+|+|+|++++++
T Consensus 17 ~~~~iV~PGd~l~~~~~-~~~G~Gty~~~g~I~Asv~G~v~~~~~~~~~~vi~V~p~~~~~y~p~vGDvV~G~V~~v~~~ 95 (209)
T 2nn6_I 17 PPVRYCIPGERLCNLEE-GSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETESQLLPDVGAIVTCKVSSINSR 95 (209)
T ss_dssp ---CCCCTTCEEEETTT-CCCSSSCEEETTEEECCSCSCBCCCBCTTSSBC-CBCCSCCCCCCCCTTCEEEEEEEEECSS
T ss_pred CCCcEEcCCCCCCCCCC-eeecCCEEEECCEEEEEEEEEEEEeccCCcccEEEEecCCCCcCCCCCCCEEEEEEEEEECc
Confidence 44679999999986665 9999999999999999999999864 35789999987 59999999999999999999
Q ss_pred eEEEEEcCc--------cceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCC-ceEEEEccCCCcc
Q 020356 105 RWKLEINFT--------QDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDG-SLQLQARNQKYGK 175 (327)
Q Consensus 105 ~w~VDI~s~--------~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g-~i~Lstr~~~lGk 175 (327)
+|+|||++. ..|+||++++. ....|+.+|+++|++||+|+|+|+++++++ .+.||||+++||+
T Consensus 96 ~a~V~I~~v~~~~L~~~~~GlIhisei~--------~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~k~~~lGV 167 (209)
T 2nn6_I 96 FAKVHILYVGSMPLKNSFRGTIRKEDVR--------ATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGV 167 (209)
T ss_dssp EEEEEEEESSSSCCCCSSCSCEEEEGGG--------TCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEECCSSSCEE
T ss_pred eEEEEECccccccccCCceeEEEHHHcc--------cccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEEEecCCCcE
Confidence 999999754 45555555542 345566799999999999999999998765 5999999999999
Q ss_pred CC
Q 020356 176 LE 177 (327)
Q Consensus 176 L~ 177 (327)
+.
T Consensus 168 v~ 169 (209)
T 2nn6_I 168 VV 169 (209)
T ss_dssp CC
T ss_pred EE
Confidence 96
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.89 E-value=9.8e-09 Score=78.98 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=61.5
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCC-CceE
Q 020356 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD-GSLQ 165 (327)
Q Consensus 87 ~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~-g~i~ 165 (327)
.|++||+|.|+|+++.+.+|+|+|+....|++|+|++. ..+. +.|++||.|.|+|.+++.+ +.+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~------~~~~--------~~~~~Gd~V~v~V~~vd~~~~~i~ 67 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMI------SLRL--------ENLNVGDEIIVQAIDVRPEKREID 67 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCS------SCCG--------GGCCTTCEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCC------cccc--------eeeCCCCEEEEEEEEEECCCCEEE
Confidence 47899999999999999999999998899999999874 1111 5699999999999999986 8899
Q ss_pred EEEccC
Q 020356 166 LQARNQ 171 (327)
Q Consensus 166 Lstr~~ 171 (327)
|+.+..
T Consensus 68 lsl~~~ 73 (80)
T 2k52_A 68 FKYIPL 73 (80)
T ss_dssp EEECSC
T ss_pred EEEeec
Confidence 998754
No 10
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.75 E-value=3.2e-08 Score=83.15 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=63.7
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC-CCceE
Q 020356 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG-DGSLQ 165 (327)
Q Consensus 87 ~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~-~g~i~ 165 (327)
.+++||+|.|+|+++.+.+++|+|.....|++|+|++. .+ + .. ++.+.|++||.|.|+|.+++. ++.+.
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~-~~-----~--~~--~~~~~~~vGd~V~vkV~~vd~~~~kI~ 73 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVT-HG-----F--VK--DINEHLSVGDEVQVKVLAVDEEKGKIS 73 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTS-SS-----C--CS--CGGGTCCTTCEEEEEEEEEETTTTEEE
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCC-cc-----c--cc--CccccCCCCCEEEEEEEEEeCCCCEEE
Confidence 46899999999999999999999988899999999885 11 1 11 567789999999999999987 78999
Q ss_pred EEEcc
Q 020356 166 LQARN 170 (327)
Q Consensus 166 Lstr~ 170 (327)
||++.
T Consensus 74 LSlk~ 78 (130)
T 2k4k_A 74 LSIRA 78 (130)
T ss_dssp EESHH
T ss_pred EEEee
Confidence 99875
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.75 E-value=2.7e-08 Score=88.50 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=58.8
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEE--cCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC-C
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEI--NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG-D 161 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI--~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~-~ 161 (327)
.+.|++||+|.|+|+++++.+++|+| .....|++|+|+++- .+ .. ++++.|++||.|.++|.+++. .
T Consensus 10 ~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~------~~--v~--~~~~~~~vGd~V~VkVl~vD~~~ 79 (182)
T 1kl9_A 10 HKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSR------RR--IR--SINKLIRIGRNECVVVIRVDKEK 79 (182)
T ss_dssp SSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC----------------------CTTCEEEEEEEEEETTT
T ss_pred ccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCC------cc--cC--CHHHhcCCCCEEEEEEEEEECCC
Confidence 34679999999999999999999999 467899999999861 11 11 567889999999999999986 5
Q ss_pred CceEEEEccC
Q 020356 162 GSLQLQARNQ 171 (327)
Q Consensus 162 g~i~Lstr~~ 171 (327)
+.+.||++..
T Consensus 80 ~rI~LSlk~~ 89 (182)
T 1kl9_A 80 GYIDLSKRRV 89 (182)
T ss_dssp TEEEEESTTC
T ss_pred CEEEEEEeec
Confidence 7899999864
No 12
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=4.1e-08 Score=79.19 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=63.6
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcC---ccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCC
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINF---TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD 161 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s---~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~ 161 (327)
...|++||++.|+|+++.+.+++|+|.. ...|++|+|++.-.. + .. ++.+.|++||.|.++|.+++.
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~---~----~~--~~~~~~~~Gd~V~VkV~~vd~- 76 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREG---R----VA--NVADVVSKGQRVKVKVLSFTG- 76 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSS---C----CC--CHHHHCCTTCEEEEEEEEEET-
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCc---c----cC--CcccEeCCCCEEEEEEEEEEC-
Confidence 3578999999999999999999999996 789999999873111 1 11 556789999999999999987
Q ss_pred CceEEEEcc
Q 020356 162 GSLQLQARN 170 (327)
Q Consensus 162 g~i~Lstr~ 170 (327)
+.+.||++.
T Consensus 77 ~~i~LSlk~ 85 (103)
T 2eqs_A 77 TKTSLSMKD 85 (103)
T ss_dssp TEEEEESTT
T ss_pred CeeEEEEee
Confidence 689999986
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.71 E-value=5.3e-08 Score=79.93 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=67.7
Q ss_pred cEEEEEecCC-ccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEE
Q 020356 75 KLIYVRALRA-RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCA 153 (327)
Q Consensus 75 k~v~V~pl~~-rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~A 153 (327)
|.+.+.|... .+.|++||+|.|+|+++.+.+++|+|+....|++|+|++.... +. .+..+.|++||.|.+
T Consensus 14 k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~---~~------~~~~~~~~vGd~V~v 84 (115)
T 2khi_A 14 LVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN---KN------IHPSKVVNVGDVVEV 84 (115)
T ss_dssp -------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSS---TT------CSSTTTCCTTCEEEE
T ss_pred hhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccc---cc------cCcccEECCCCEEEE
Confidence 3456677765 5789999999999999999999999998899999999885311 11 145667999999999
Q ss_pred EEEecCC-CCceEEEEccC
Q 020356 154 EVRSSQG-DGSLQLQARNQ 171 (327)
Q Consensus 154 eV~sv~~-~g~i~Lstr~~ 171 (327)
+|.+++. ++.+.|+++..
T Consensus 85 kV~~vd~~~~rI~lslk~~ 103 (115)
T 2khi_A 85 MVLDIDEERRRISLGLKQC 103 (115)
T ss_dssp EEEEEETTTTEEEECCCCC
T ss_pred EEEEEECCCCEEEEEEEec
Confidence 9999987 57899998864
No 14
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.70 E-value=3.6e-08 Score=87.06 Aligned_cols=85 Identities=24% Similarity=0.339 Sum_probs=68.7
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccch-------hhhhcccCCCCEEEEEEEec
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDE-------LNMRSIFTENDLVCAEVRSS 158 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de-------~~mr~~~~~GDlV~AeV~sv 158 (327)
|.|++|+++.|+|+++.+.+++|+|+ +.+|++|+|++. ++ +...|+ .+..+.|++||.|.++|.++
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l~-~~eglvhis~l~-~~-----~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 149 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRLG-PLDGLIHVSQIM-DD-----YVSYDPKREAIIGKETGKVLEIGDYVRARIVAI 149 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSC-SS-----CEEECCC--CEEETTTCCEECTTCEEEEEEEEE
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEEc-CccEEEEhHHhC-CC-----cceECCccceEEecCCCeEEcCCCEEEEEEEEE
Confidence 68999999999999999999999997 489999999874 21 111111 14567899999999999999
Q ss_pred CC------CCceEEEEccCCCccCC
Q 020356 159 QG------DGSLQLQARNQKYGKLE 177 (327)
Q Consensus 159 ~~------~g~i~Lstr~~~lGkL~ 177 (327)
+. .+.+.||++.++||++.
T Consensus 150 d~~~~~p~~~~I~lS~k~~~LG~~~ 174 (187)
T 1go3_E 150 SLKAERKRGSKIALTMRQPYLGKLE 174 (187)
T ss_dssp ECCC-----CEEEEECCSTTCEEHH
T ss_pred EcccCCCCccEEEEEEcCCCCCcHH
Confidence 86 34799999999999773
No 15
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=3.7e-08 Score=81.65 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=63.8
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcC-ccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCC--
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINF-TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD-- 161 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s-~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~-- 161 (327)
.+.|++||+|.|+|+++.+.+++|+|.. ...|++|++++.-. + .+ ++.+.|++||.|.|+|.+++..
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~------~--~~--~~~~~~~~Gd~V~VkV~~vd~~~~ 86 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSC------R--VD--KPSEIVDVGDKVWVKLIGREMKND 86 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSS------C--CS--CHHHHCCTTCEEEEEEEEEEECSS
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcc------c--cc--ChhhcCCCCCEEEEEEEEEecccc
Confidence 3789999999999999999999999965 37999999988511 1 11 5677899999999999999753
Q ss_pred -CceEEEEccC
Q 020356 162 -GSLQLQARNQ 171 (327)
Q Consensus 162 -g~i~Lstr~~ 171 (327)
+.+.|+++..
T Consensus 87 ~~~i~LSlk~~ 97 (119)
T 2cqo_A 87 RIKVSLSMKVV 97 (119)
T ss_dssp CEEEEEESTTB
T ss_pred CceEEEEEeec
Confidence 5899998864
No 16
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.69 E-value=5e-08 Score=79.20 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=64.6
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCC-c
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDG-S 163 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g-~ 163 (327)
.+.+++||+|.|+|+++.+.+++|+|+....|++|++++.- .+ .+ ++.+.|++||.|.|+|.+++.++ .
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~------~~--~~--~~~~~~~vGd~V~v~V~~vd~~~~k 95 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASR------DR--VE--DATLVLSVGDEVEAKFTGVDRKNRA 95 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCS------SS--SS--SGGGSCCTTCEEEEEEEEEETTTTE
T ss_pred hhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCc------cc--cc--ChhhccCCCCEEEEEEEEEECCCCE
Confidence 35789999999999999999999999988999999998741 11 11 45678999999999999998764 7
Q ss_pred eEEEEccC
Q 020356 164 LQLQARNQ 171 (327)
Q Consensus 164 i~Lstr~~ 171 (327)
+.||++..
T Consensus 96 i~LS~k~~ 103 (109)
T 2khj_A 96 ISLSVRAK 103 (109)
T ss_dssp EEEETTSS
T ss_pred EEEEEeec
Confidence 99998763
No 17
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.68 E-value=6.3e-08 Score=85.54 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=61.3
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEc--CccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC-C
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEIN--FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG-D 161 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~--s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~-~ 161 (327)
.+.|++||+|.|+|+++.+.+++|+|. ....|++|+|+++- .+. . ++++.|++||.|.|+|.+++. .
T Consensus 10 ~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~------~~v--~--~~~~~~~vGd~V~vkVl~vd~~~ 79 (175)
T 2a19_A 10 NKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSR------RRI--R--SIQKLIRVGKNDVAVVLRVDKEK 79 (175)
T ss_dssp SSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC------------------CCCCCCCTTSEEEEEEEEEETTT
T ss_pred hcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCC------ccc--C--CHHHcCCCCCEEEEEEEEEECCC
Confidence 457899999999999999999999994 56899999999851 111 1 567789999999999999986 5
Q ss_pred CceEEEEccC
Q 020356 162 GSLQLQARNQ 171 (327)
Q Consensus 162 g~i~Lstr~~ 171 (327)
+.+.||++..
T Consensus 80 ~~I~LSlk~~ 89 (175)
T 2a19_A 80 GYIDLSKRRV 89 (175)
T ss_dssp TEEEEESTTC
T ss_pred CeEEEEEEec
Confidence 7899999864
No 18
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.64 E-value=9.7e-08 Score=89.95 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=65.5
Q ss_pred ecCCccCCCCCCEEEEEEEEEecceEEEEEc--CccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEec
Q 020356 81 ALRARYKPETGDIVIGRVIEVVPKRWKLEIN--FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSS 158 (327)
Q Consensus 81 pl~~rY~P~vGDiVIGrV~~V~~~~w~VDI~--s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv 158 (327)
|+...+.|++||+|.|+|+++.+.+++|+|. ....|++|+|+++ ..+. . ++++.|++||.|.++|.++
T Consensus 2 ~~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels------~~~v--~--~~~~~~kvGd~V~vkVi~v 71 (275)
T 3aev_A 2 PRKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVA------STWV--R--NIRDYLKEGQKVVAKVIRV 71 (275)
T ss_dssp -----CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSC------SSCC--S--CGGGTCCTTCEEEEEEEEE
T ss_pred CcccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcC------cccc--c--CHHhccCCCCEEEEEEEEE
Confidence 4556678999999999999999999999998 4789999999985 1111 1 4677899999999999999
Q ss_pred CC-CCceEEEEccC
Q 020356 159 QG-DGSLQLQARNQ 171 (327)
Q Consensus 159 ~~-~g~i~Lstr~~ 171 (327)
+. .+.+.||++..
T Consensus 72 D~~~~~I~LSlk~~ 85 (275)
T 3aev_A 72 DPRKGHIDLSLRRV 85 (275)
T ss_dssp ETTTTEEEEESTTC
T ss_pred ECCCCEEEEEEeec
Confidence 87 68899999874
No 19
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.55 E-value=2e-07 Score=73.39 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=61.3
Q ss_pred cc-CCCCCCEEEEEEEEEecceEEEEEcC--ccceeeecc-cccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC
Q 020356 85 RY-KPETGDIVIGRVIEVVPKRWKLEINF--TQDAILMLS-SMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG 160 (327)
Q Consensus 85 rY-~P~vGDiVIGrV~~V~~~~w~VDI~s--~~~a~L~ls-~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~ 160 (327)
.| .|++|+++.|+|+ +++.+++|+|.. ...|.+|+| +++ ..+. .+.++.| +||.|.++|.+++.
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~------~~~~----~~~~~~~-~Gd~V~VkV~~vd~ 72 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMH------MDRY----VEYRDKL-VGKTVKVKVIRVDY 72 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCC------HHHH----HHHHHHH-TTCEEEEEEEEEET
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhC------cccc----cCHhHEe-CCCEEEEEEEEEEC
Confidence 45 5899999999999 999999999974 589999999 885 1111 1456778 99999999999986
Q ss_pred -CCceEEEEcc
Q 020356 161 -DGSLQLQARN 170 (327)
Q Consensus 161 -~g~i~Lstr~ 170 (327)
.+.+.|++|.
T Consensus 73 ~~~kI~lslk~ 83 (88)
T 1luz_A 73 TKGYIDVNYKR 83 (88)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCEEEEEEee
Confidence 5789999875
No 20
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.50 E-value=3.7e-07 Score=80.12 Aligned_cols=90 Identities=23% Similarity=0.323 Sum_probs=67.9
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCccc---ccccccchhhhhcccCCCCEEEEEEEecCC-
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQ---RRRTAVDELNMRSIFTENDLVCAEVRSSQG- 160 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~---rrr~~~de~~mr~~~~~GDlV~AeV~sv~~- 160 (327)
.+.|.+|+++.|+|++++..+++|+++ +.++++|+|++. +.... .+..-.. .+-...|++||.|+++|.+++.
T Consensus 76 v~~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~-~d~~~~d~~~~~~~g-~~~~~~~~~Gd~VrvkV~~v~~~ 152 (180)
T 4ayb_E 76 TYVPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQIT-DDTLKYDNVRGIIFG-EKSKKVIQKGDKVRARVISVAST 152 (180)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSC-SSCEEECSSSCCEEE-TTTCCCCCTTCEEEEEEEEECC-
T ss_pred eeeccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecC-CCccccchhcceEEE-eccCeEECCCCEEEEEEEEEeCC
Confidence 468999999999999999999999997 689999999874 21110 0000000 1335679999999999999974
Q ss_pred ----CCceEEEEccCCCccCC
Q 020356 161 ----DGSLQLQARNQKYGKLE 177 (327)
Q Consensus 161 ----~g~i~Lstr~~~lGkL~ 177 (327)
.+.+.||+|+++||++.
T Consensus 153 ~~~~~~rI~ls~k~~gLG~~~ 173 (180)
T 4ayb_E 153 VTGRLPRIALTMRQPYLGKLE 173 (180)
T ss_dssp ------CEEEECCSTTCEEHH
T ss_pred CCcccCcEEEEcCCCCCCCCh
Confidence 34799999999999863
No 21
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.44 E-value=4.9e-07 Score=86.42 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEc--CccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC-CC
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEIN--FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG-DG 162 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~--s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~-~g 162 (327)
..|++||+|.|+|+++.+.+++|+|. ....|++|+|+++. .+. .++.+.|++||.|.++|.+++. .+
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~------~~i----~~~~~~~kvGd~V~VkVl~vD~~~~ 78 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSR------RRI----RSINKLIRIGRNECVKVIRVDKEKG 78 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSC------SSC----SCCTTTCSSSCEEEEEEEEEETTTT
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCc------ccc----cCHHHhcCCCCEEEEEEEEEeCCCC
Confidence 35789999999999999999999997 67899999999852 111 1567889999999999999987 57
Q ss_pred ceEEEEccC
Q 020356 163 SLQLQARNQ 171 (327)
Q Consensus 163 ~i~Lstr~~ 171 (327)
.+.||++..
T Consensus 79 rI~LSlK~~ 87 (308)
T 1q8k_A 79 YIDLSKRRV 87 (308)
T ss_dssp EEEEECSSC
T ss_pred EEEEEEEec
Confidence 899999875
No 22
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.42 E-value=3.3e-07 Score=85.85 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=67.6
Q ss_pred CCccCCCCCCEEEEEEEEEecceEEEEEc--CccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC
Q 020356 83 RARYKPETGDIVIGRVIEVVPKRWKLEIN--FTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG 160 (327)
Q Consensus 83 ~~rY~P~vGDiVIGrV~~V~~~~w~VDI~--s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~ 160 (327)
...+.|++||+|.|+|+++.+.+++|+|+ ....|++|+|++.- .+ .. ++++.|++||.|.++|.+++.
T Consensus 4 ~~~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~------~~--v~--~~~~~~~vGd~V~VkVi~vd~ 73 (266)
T 3cw2_C 4 SRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSS------KW--VK--NIRDVLKENRKVIVKVIRVDR 73 (266)
T ss_dssp CSSSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSC------SS--CC--CHHHHSCTTCEEEEEECCCCS
T ss_pred cccccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCc------cc--cc--CHHHhCcCCCEEEEEEEEEeC
Confidence 34678999999999999999999999997 67899999998851 11 11 567889999999999999986
Q ss_pred -CCceEEEEccCC
Q 020356 161 -DGSLQLQARNQK 172 (327)
Q Consensus 161 -~g~i~Lstr~~~ 172 (327)
++.+.||++...
T Consensus 74 ~~g~I~LSlk~~~ 86 (266)
T 3cw2_C 74 RKGTVDVSLKKVT 86 (266)
T ss_dssp SSCCCBEESTTSC
T ss_pred CCCEEEEEEEecc
Confidence 788999998754
No 23
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.40 E-value=7.6e-07 Score=73.23 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=61.6
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCC-CceE
Q 020356 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD-GSLQ 165 (327)
Q Consensus 87 ~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~-g~i~ 165 (327)
.+++||+|.|+|+++.+.+|+|+|+....+.+|.++.. .+ .. ..+ +.++.|++||.|.|+|.+++.+ +.+.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~-~~---~~--~~~--~~~~~~~~Gd~V~vkV~~vd~~~~~i~ 89 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKA-QE---YI--RQK--NKGAKLKVGQYLNCIVEKVKGNGGVVS 89 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHH-HH---HH--HHH--SSSCCCCTTCEEEEEEEECCTTSCEEE
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecc-cc---cc--ccc--CccCEeCCCCEEEEEEEEEeCCCCEEE
Confidence 57899999999999999999999983233444444431 00 00 011 3467899999999999999874 6899
Q ss_pred EEEccCCCccC
Q 020356 166 LQARNQKYGKL 176 (327)
Q Consensus 166 Lstr~~~lGkL 176 (327)
|+++...+|+-
T Consensus 90 Lslk~~~l~~~ 100 (119)
T 1wi5_A 90 LSVGHSEVSTA 100 (119)
T ss_dssp EECCCCCSCCC
T ss_pred EEEchhhcccc
Confidence 99999988865
No 24
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.32 E-value=1.2e-06 Score=76.47 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=64.4
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccc-----cchhhhhcccCCCCEEEEEEEecC
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA-----VDELNMRSIFTENDLVCAEVRSSQ 159 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~-----~de~~mr~~~~~GDlV~AeV~sv~ 159 (327)
.+.|.+|+++.|+|+++++.+|+|+|+ +.++++|+|++. ......... ..+ .-...|+.||.|.++|.+++
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~--~~~~~d~~~~~~~~~~~-~~~~~~~~Gd~V~vkV~~vd 151 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIP--SEMEFDPNSNPPCYKTM-DEDIVIQQDDEIRLKIVGTR 151 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSC--TTEEEESSSSSCEEEET-TSCSEEETTCEEEEEEEEEE
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCC--CCcEECCCCCccEEEeC-CCCEEECCCCEEEEEEEEEE
Confidence 467999999999999999999999997 566999999763 211100000 000 12557999999999999997
Q ss_pred CCC---ceEEEEccCCCccCC
Q 020356 160 GDG---SLQLQARNQKYGKLE 177 (327)
Q Consensus 160 ~~g---~i~Lstr~~~lGkL~ 177 (327)
.+. ...-|+++++||++.
T Consensus 152 ~~~~~~~~igsm~~~~LG~~~ 172 (172)
T 2c35_B 152 VDKNDIFAIGSLMDDYLGLVS 172 (172)
T ss_dssp EETTEEEEEEECCSTTCEEC-
T ss_pred cCCCCcEEEEEecCCCCCCCC
Confidence 542 233389999999863
No 25
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.26 E-value=1.9e-06 Score=75.16 Aligned_cols=82 Identities=11% Similarity=0.265 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhh-------hcccCCCCEEEEEEEec
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNM-------RSIFTENDLVCAEVRSS 158 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~m-------r~~~~~GDlV~AeV~sv 158 (327)
+.|.+|+++.|+|+++++.+++|+|+. .++++|+|++. .... .|+.+. ++.|++||.|.++|.++
T Consensus 79 ~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~--~~~~-----~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (171)
T 1y14_B 79 FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMP--QDLT-----FNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (171)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSC--TTCE-----ECC-----CEECSSCEECTTCEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCC--CCce-----ECcccCceEEeccceEECCCCEEEEEEEEE
Confidence 578999999999999999999999987 99999999773 2111 010000 15699999999999998
Q ss_pred CCCC----ceEEEEccCCCccC
Q 020356 159 QGDG----SLQLQARNQKYGKL 176 (327)
Q Consensus 159 ~~~g----~i~Lstr~~~lGkL 176 (327)
+.+. .+. |+++++||++
T Consensus 151 d~~~~~~~~ig-sm~~~~LG~~ 171 (171)
T 1y14_B 151 ISQVSSIHAIG-SIKEDYLGAI 171 (171)
T ss_dssp EEETTEEEEEE-ECCSTTCEEC
T ss_pred EcCCCCcEEEE-EcCCCCCCCC
Confidence 7542 344 7899999864
No 26
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.14 E-value=1.4e-06 Score=76.31 Aligned_cols=86 Identities=12% Similarity=0.169 Sum_probs=65.4
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCccccc----ccccchhhhhcccCCCCEEEEEEEecCC
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRR----RTAVDELNMRSIFTENDLVCAEVRSSQG 160 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rr----r~~~de~~mr~~~~~GDlV~AeV~sv~~ 160 (327)
-+.|.+|+++.|+|+++++.+++|+++ +.++++|+|++. ....-. .... .+....|++||.|+++|.+++.
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~--~~~~~d~~~~~~~~--~~~~~~~~~Gd~VrvkV~~vd~ 153 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVP--PDMKFDPTANPPNY--SGEDQVIEKGSNVRLKIVGTRT 153 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSC--TTCCCBSSSSSCBE--ESSSCEECSSCCEEEEEEEEEE
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCC--CccccCcccccceE--ecCCcEECCCCEEEEEEEEEEC
Confidence 368999999999999999999999998 566999999873 210000 0001 1234679999999999999986
Q ss_pred CC----ceEEEEccCCCccC
Q 020356 161 DG----SLQLQARNQKYGKL 176 (327)
Q Consensus 161 ~g----~i~Lstr~~~lGkL 176 (327)
+. .+. |+++++||+|
T Consensus 154 ~~~~~~~Ig-tm~~~~LG~~ 172 (172)
T 3h0g_G 154 DATEIFAIA-TMKEDYLGVL 172 (172)
T ss_dssp SSSCEEEEE-ECCSTTCEEC
T ss_pred CCCCceEEE-EcCCCCCCCC
Confidence 43 566 8999999986
No 27
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.11 E-value=4.2e-06 Score=76.12 Aligned_cols=85 Identities=11% Similarity=0.255 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCccc---cccc--ccchhhhhcccCCCCEEEEEEEecCC
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQ---RRRT--AVDELNMRSIFTENDLVCAEVRSSQG 160 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~---rrr~--~~de~~mr~~~~~GDlV~AeV~sv~~ 160 (327)
+.|++|+++.|+|+++++.+++|+|+. .++++|+|.+. .... ...+ ...+ ++.+++||.|..+|.+++.
T Consensus 79 ~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~--d~~~~d~~~~~w~~~~~---~~~~~~Gd~VrVkV~~vd~ 152 (215)
T 2b8k_G 79 FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMP--QDLTFNAGSNPPSYQSS---EDVITIKSRIRVKIEGCIS 152 (215)
T ss_dssp ECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSC--SSCCCBSSCSSCEEECS---SCEEETTCEEEEEEEEEEE
T ss_pred eccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCC--ccceeccccccceeecc---ccEECCCCEEEEEEEEEEc
Confidence 578999999999999999999999986 99999999773 2100 0000 0000 1569999999999999975
Q ss_pred CC----ceEEEEccCCCccCC
Q 020356 161 DG----SLQLQARNQKYGKLE 177 (327)
Q Consensus 161 ~g----~i~Lstr~~~lGkL~ 177 (327)
+. .+. |++++++|++.
T Consensus 153 ~~~~i~~Ig-Smk~~~LG~~~ 172 (215)
T 2b8k_G 153 QVSSIHAIG-SIKEDYLGAIS 172 (215)
T ss_dssp ETTEEEEEE-ECCSTTCEEC-
T ss_pred CCCccEEEE-EcCCCCCCCcc
Confidence 42 455 88999999886
No 28
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.99 E-value=1.7e-05 Score=74.91 Aligned_cols=70 Identities=11% Similarity=-0.041 Sum_probs=63.8
Q ss_pred CCCCEEEEEEEEEecceEEE-EEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC-CCceEE
Q 020356 89 ETGDIVIGRVIEVVPKRWKL-EINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG-DGSLQL 166 (327)
Q Consensus 89 ~vGDiVIGrV~~V~~~~w~V-DI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~-~g~i~L 166 (327)
++||+|-|+|.++++.+++| +|+....|++|.|++. +.+++||-|.|+|.++++ ++.+.|
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~------------------~~l~~Gd~v~~~V~~id~~d~kI~L 212 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY------------------AEPRLGQVLDARVIGFREVDRTLNL 212 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS------------------SCCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc------------------ccCCCCCEEEEEEEEEECCCCeEEE
Confidence 57999999999999999999 9998999999999874 238999999999999998 899999
Q ss_pred EEccCCCccC
Q 020356 167 QARNQKYGKL 176 (327)
Q Consensus 167 str~~~lGkL 176 (327)
|++...|..+
T Consensus 213 Slk~~~~~~~ 222 (285)
T 3go5_A 213 SLKPRSFEML 222 (285)
T ss_dssp ECSCCCCCCC
T ss_pred EeChhhhhcc
Confidence 9999888655
No 29
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.84 E-value=2.2e-06 Score=90.18 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCCceE
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g~i~ 165 (327)
..|++|+++.|+|+++.+.+++|+|....+|++|+|++. ..+.. ++.+.|++||.|.++|.+++..+.+.
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels------~~rv~----~~~d~~kvGD~V~VkVi~iD~~grI~ 702 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQIS------NERVA----KPSDVLKEGQMVKVKLLGFDDRGKTK 702 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcC------ccccc----CccccCCCCCEEEEEEEEECCCCcEE
Confidence 368999999999999999999999998899999999985 12211 56788999999999999999888999
Q ss_pred EEEccC
Q 020356 166 LQARNQ 171 (327)
Q Consensus 166 Lstr~~ 171 (327)
||+|..
T Consensus 703 LS~K~~ 708 (726)
T 4aid_A 703 LSMKVV 708 (726)
T ss_dssp ------
T ss_pred EEEeec
Confidence 998863
No 30
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.77 E-value=7.8e-05 Score=66.91 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=65.1
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCccc---ccccccc-------hhhhhcccCCCCEEEEEE
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQ---RRRTAVD-------ELNMRSIFTENDLVCAEV 155 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~---rrr~~~d-------e~~mr~~~~~GDlV~AeV 155 (327)
+.|.+|+++.|+|++++..+.+|+++ +.++++|++++. |.... .+..-.. ..+-+..|+.||.|+.+|
T Consensus 77 f~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~-~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 77 FRPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDML-FDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGB-CTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred EccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhC-CCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 57999999999999999999999996 778889888763 32110 0000000 012356799999999999
Q ss_pred EecCCC------------------------CceEEEEccCCCccCC
Q 020356 156 RSSQGD------------------------GSLQLQARNQKYGKLE 177 (327)
Q Consensus 156 ~sv~~~------------------------g~i~Lstr~~~lGkL~ 177 (327)
.+++-. ..+.+|+++++||.+.
T Consensus 155 ~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~~~ 200 (203)
T 3ayh_B 155 ESEDFVDISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGIPA 200 (203)
T ss_dssp EEEEECC--------------------CCSEEEEEEBCSTTCBCGG
T ss_pred EEEEccccCCCCccccccccccccccCCCCeEEEEEecCCCCceee
Confidence 997631 1277789999999874
No 31
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00011 Score=81.28 Aligned_cols=77 Identities=10% Similarity=-0.026 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC-CCce
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG-DGSL 164 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~-~g~i 164 (327)
-..++|++|-|+|++|+..+++|+|....+|++|+|+++ . .+ .. .+..+.|++||.|.|+|.+++. .+.+
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSels--d----~~-~v--~~p~~v~kvGd~V~vkVl~VD~~~~rI 968 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHA--G----AQ-LR--RPANEIYEIGKTYPAKVIYIDYANITA 968 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSS--S----TT-SC--SCSTTTSCTTCEEEEEEEEEEGGGTEE
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcC--C----Cc-cc--CCHHHcCCCCCEEEEEEEEEECCCCEE
Confidence 466899999999999999999999998899999999885 1 11 01 1345779999999999999984 5789
Q ss_pred EEEEccC
Q 020356 165 QLQARNQ 171 (327)
Q Consensus 165 ~Lstr~~ 171 (327)
.||++..
T Consensus 969 ~LSlk~~ 975 (1219)
T 3psi_A 969 EVSLLDH 975 (1219)
T ss_dssp EEECCHH
T ss_pred EEEecHH
Confidence 9999763
No 32
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.45 E-value=6.4e-05 Score=79.84 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=64.1
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC-CCceE
Q 020356 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG-DGSLQ 165 (327)
Q Consensus 87 ~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~-~g~i~ 165 (327)
..++|++|-|+|++|+..+.+|+|+...+|++|+|++. . .+ .. +..+.|++||.|.++|.+++. .+.+.
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Ls--d----~~--v~--d~~~~~~vGd~V~VkVi~VD~~~~rI~ 720 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALS--E----KF--VK--DPYEVVKAGDIVKVKVMEVDIPRNRVG 720 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSC--S----SC--CS--CHHHHCCTTCCCCCBEEEEETTTTEEE
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcC--c----cc--cC--ChhheeCCCCEEEEEEEEEECCCCEEE
Confidence 46899999999999999999999998889999999885 1 11 11 456789999999999999986 57899
Q ss_pred EEEccCC
Q 020356 166 LQARNQK 172 (327)
Q Consensus 166 Lstr~~~ 172 (327)
||++...
T Consensus 721 LSlk~~~ 727 (785)
T 3bzc_A 721 LSMRMSD 727 (785)
T ss_dssp ECCSSCC
T ss_pred EEEecCC
Confidence 9998654
No 33
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.40 E-value=2.3e-05 Score=82.63 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCCceE
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQ 165 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g~i~ 165 (327)
..|++|+++.|+|+++.+.++||+|....+|++|+|++. ..+. .+..+.|++||.|.++|.+++..+.+.
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~------~~~v----~~~~~~~~vGd~V~VkVi~vd~~grI~ 692 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA------DKRV----EKVTDYLQMGQEVPVKVLEVDRQGRIR 692 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcC------Cccc----cCcccccCCCCEEEEEEEEECCCCcEE
Confidence 468999999999999999999999988899999999985 1111 155678999999999999998888999
Q ss_pred EEEccC
Q 020356 166 LQARNQ 171 (327)
Q Consensus 166 Lstr~~ 171 (327)
||++..
T Consensus 693 LS~k~~ 698 (723)
T 3cdi_A 693 LSIKEA 698 (723)
T ss_dssp ------
T ss_pred EEEEec
Confidence 998853
No 34
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.30 E-value=3.5e-05 Score=83.95 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC-CCceE
Q 020356 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG-DGSLQ 165 (327)
Q Consensus 87 ~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~-~g~i~ 165 (327)
..++|++|-|+|++|+..+++|+|+...+|++|+|+++ ..+ .. .+..+.|++||.|.|+|.+++. .+.+.
T Consensus 902 ~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSels------d~~-~v--~~~~~v~kvGd~V~vkVl~VD~~~~rI~ 972 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHA------GAQ-LR--RPANEIYEIGKTYPAKVIYIDYANITAE 972 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcC------CCc-cc--CCHHHcCCCCCEEEEEEEEEECCCCEEE
Confidence 45789999999999999999999998889999999885 111 01 1456789999999999999984 67899
Q ss_pred EEEccCCC
Q 020356 166 LQARNQKY 173 (327)
Q Consensus 166 Lstr~~~l 173 (327)
||+|...+
T Consensus 973 LSlk~~dl 980 (1030)
T 3psf_A 973 VSLLDHDV 980 (1030)
T ss_dssp --------
T ss_pred EEechHHh
Confidence 99987644
No 35
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.25 E-value=2.7e-05 Score=82.44 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=37.8
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccc----cCCCcccccccccchhhhhcccCCCCEEEEEEEecCCC
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSM----NLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD 161 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v----~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~ 161 (327)
..|++|+++.|+|+++.+.+++|+|....+|++|+|++ . ..+ . .+..+.|++||.|.++|.+++..
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s------~~r--v--~~~~~~~~vGd~V~VkVi~vd~~ 732 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAG------GKR--V--ENVEDVLGVGQKVQVEIAEIDSR 732 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-----------------------------CCSSCBCCCCCCCCCSS
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccC------CCc--c--cCcccccCCCCEEEEEEEEECCC
Confidence 57899999999999999999999998789999999987 4 111 1 15567899999999999999888
Q ss_pred CceEEEEccC
Q 020356 162 GSLQLQARNQ 171 (327)
Q Consensus 162 g~i~Lstr~~ 171 (327)
+.+.||++..
T Consensus 733 grI~LS~k~~ 742 (757)
T 1e3p_A 733 GKLSLIPVIE 742 (757)
T ss_dssp CC--------
T ss_pred CCEEEEEecC
Confidence 8999998764
No 36
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.09 E-value=0.00087 Score=64.91 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=56.9
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCC---
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD--- 161 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~--- 161 (327)
.|..+.||+|-|+|..+..+.++||++ ...|+||.++.. |+ +.|++||-|.|.|.+++..
T Consensus 129 e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~sE~i-p~---------------E~~~vGD~Vkv~V~~V~~~~kg 191 (344)
T 1hh2_P 129 KYSELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWI-PG---------------EEIKAGDLVKVYIIDVVKTTKG 191 (344)
T ss_dssp CTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGGGSC-TT---------------CCCCTTCEEEEEEEEEEEETTE
T ss_pred HHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHHHcC-CC---------------cCCCCCCEEEEEEEEEEcCCCC
Confidence 477889999999999999999999998 789999998763 32 3489999999999999743
Q ss_pred CceEEEEcc
Q 020356 162 GSLQLQARN 170 (327)
Q Consensus 162 g~i~Lstr~ 170 (327)
+.+.||-..
T Consensus 192 ~~I~LSRt~ 200 (344)
T 1hh2_P 192 PKILVSRRV 200 (344)
T ss_dssp EEEEEESSS
T ss_pred cEEEEEeec
Confidence 256666543
No 37
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.00 E-value=0.00078 Score=62.57 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=55.9
Q ss_pred ccCCCCCCEEEEEEEE----EecceEEEEEcC---ccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEe
Q 020356 85 RYKPETGDIVIGRVIE----VVPKRWKLEINF---TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRS 157 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~----V~~~~w~VDI~s---~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~s 157 (327)
.|..++||+|.|+|.. +..+.+.|||+. ...|+||.++.. | .+.|++||-|.|-|..
T Consensus 2 ~~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi-p---------------~E~~~~GDrIkayV~~ 65 (251)
T 2asb_A 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-P---------------GESYEHGNRLRCYVVG 65 (251)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC-T---------------TCCCCTTCEEEEEEEE
T ss_pred chhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC-C---------------CccCCCCCEEEEEEEE
Confidence 4889999999999999 899999999986 478998877652 3 3459999999999999
Q ss_pred cCCC---CceEEEEccC
Q 020356 158 SQGD---GSLQLQARNQ 171 (327)
Q Consensus 158 v~~~---g~i~Lstr~~ 171 (327)
+... +.+.||-..+
T Consensus 66 V~~~~~gpqIiLSRt~p 82 (251)
T 2asb_A 66 VTRGAREPLITLSRTHP 82 (251)
T ss_dssp EECCSSSCEEEEESSCH
T ss_pred EEcCCCCCEEEEEeccH
Confidence 9754 3566765443
No 38
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=96.67 E-value=0.011 Score=59.92 Aligned_cols=83 Identities=12% Similarity=0.206 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEEEEEEecc--eEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCC-C
Q 020356 86 YKPETGDIVIGRVIEVVPK--RWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGD-G 162 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~--~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~-g 162 (327)
-.+.+|+|..|+|+.+.+. .+||||+...+|+||++++. +.-...........++.+.+++||-|..+|...... .
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~-~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~K 119 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA-REYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 119 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSC-GGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcC-hhhhccccccccccchhhhccCCCEEEEEEEeeccccC
Confidence 3567999999999999999 99999999999999999984 110000000000124667899999999999997543 3
Q ss_pred ceEEEEc
Q 020356 163 SLQLQAR 169 (327)
Q Consensus 163 ~i~Lstr 169 (327)
-+.||+.
T Consensus 120 Ga~lTt~ 126 (517)
T 2bx2_L 120 GAALTTF 126 (517)
T ss_dssp CCEEESS
T ss_pred CceEEee
Confidence 4777774
No 39
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.63 E-value=0.002 Score=62.78 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=54.7
Q ss_pred ccCCCCCCEEEEEEEE----EecceEEEEEcC---ccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEe
Q 020356 85 RYKPETGDIVIGRVIE----VVPKRWKLEINF---TQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRS 157 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~----V~~~~w~VDI~s---~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~s 157 (327)
.|..++||+|-|+|.. +..+.++|||+. ...|+||.++.. |+ +.|++||-|.|.|..
T Consensus 125 ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi-P~---------------E~~~~GDrVkvyV~~ 188 (366)
T 1k0r_A 125 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-PG---------------ESYEHGNRLRCYVVG 188 (366)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC-TT---------------CCCCTTCEEEEEEEE
T ss_pred HHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC-CC---------------ccCCCCCEEEEEEEE
Confidence 4889999999999999 999999999986 478999887753 32 459999999999999
Q ss_pred cCCCC---ceEEEEc
Q 020356 158 SQGDG---SLQLQAR 169 (327)
Q Consensus 158 v~~~g---~i~Lstr 169 (327)
+..+. .+.||-.
T Consensus 189 V~~~~kgpqI~LSRT 203 (366)
T 1k0r_A 189 VTRGAREPLITLSRT 203 (366)
T ss_dssp EECCSSSCEEEEESS
T ss_pred EecCCCccEEEEEeC
Confidence 97642 3555543
No 40
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0072 Score=54.80 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=53.8
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCccc---ccccccc--hhhhhcccCCCCEEEEEEEecC
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQ---RRRTAVD--ELNMRSIFTENDLVCAEVRSSQ 159 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~---rrr~~~d--e~~mr~~~~~GDlV~AeV~sv~ 159 (327)
-+.|.+|+++.|+|++++..+++|.+..+.++++|++++. |.... .+..-.. ...-...|+.||.|+.+|.+++
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~-~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~ 154 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNML-FEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTS-CTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHC-CCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEE
Confidence 3589999999999999999999999955788899988763 22111 0000000 0122567999999999999986
Q ss_pred C
Q 020356 160 G 160 (327)
Q Consensus 160 ~ 160 (327)
.
T Consensus 155 ~ 155 (218)
T 2ckz_B 155 F 155 (218)
T ss_dssp E
T ss_pred c
Confidence 4
No 41
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=96.34 E-value=0.015 Score=54.76 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=54.7
Q ss_pred CCCCEEEEEEEEEe-cceEEEEEcCc-cceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCCCCceEE
Q 020356 89 ETGDIVIGRVIEVV-PKRWKLEINFT-QDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQGDGSLQL 166 (327)
Q Consensus 89 ~vGDiVIGrV~~V~-~~~w~VDI~s~-~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~~g~i~L 166 (327)
++|+++.|+|++++ ..+++||++.+ .++++|+|+++. .+ ...+++||-+.+. ..++..+.+.|
T Consensus 68 ~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~------~~--------~~~~~~Gd~v~v~-l~iD~~~Ri~l 132 (285)
T 3go5_A 68 TQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPE------LK--------ELWPKKGDQLYIR-LEVDKKDRIWG 132 (285)
T ss_dssp CSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCS------SG--------GGSCCTTCEEEEE-EEECTTSCEEE
T ss_pred cCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCc------cc--------ccccCCCCEEEEE-EEECCCCcEEE
Confidence 68999999999999 79999999974 899999998752 11 1237999999765 57887788999
Q ss_pred EEcc
Q 020356 167 QARN 170 (327)
Q Consensus 167 str~ 170 (327)
|+|.
T Consensus 133 s~k~ 136 (285)
T 3go5_A 133 LLAY 136 (285)
T ss_dssp EECC
T ss_pred Eehh
Confidence 9864
No 42
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=92.84 E-value=0.065 Score=42.60 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEEEEEecceEEEEEcCccceeeeccccc
Q 020356 87 KPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMN 124 (327)
Q Consensus 87 ~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~ 124 (327)
.|++|+.|-|.|+.+.+.+.+|+|....++++|+|+++
T Consensus 58 ~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~ 95 (101)
T 2bh8_A 58 NPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS 95 (101)
T ss_dssp CCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCc
Confidence 79999999999999999999999987899999999885
No 43
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=92.65 E-value=0.87 Score=35.99 Aligned_cols=64 Identities=9% Similarity=0.054 Sum_probs=47.4
Q ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccccchhh-hhcccCCCCEEEEE
Q 020356 86 YKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELN-MRSIFTENDLVCAE 154 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~-mr~~~~~GDlV~Ae 154 (327)
..|..|+...+.|+++.++.+.|-+.....+.|+...+.+-. +... ..-. ..+.|++||+|+.+
T Consensus 29 ~~~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~---~~~~--~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 29 DIGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAH---RFLS--NDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TSCTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTG---GGTT--TCTTTGGGSCCTTEEEEEE
T ss_pred ccCccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhh---hccc--ccccchhccCCCCCEEEEE
Confidence 367789999999999999999999977677777777765431 1000 1113 46779999999988
No 44
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=91.87 E-value=0.37 Score=49.91 Aligned_cols=78 Identities=6% Similarity=0.139 Sum_probs=57.0
Q ss_pred CCCCCC--EEEEEEEEEecceEEEEEc-CccceeeecccccCCCcccccccccch----h--hhhcccCCCCEEEEEEEe
Q 020356 87 KPETGD--IVIGRVIEVVPKRWKLEIN-FTQDAILMLSSMNLPDGIQRRRTAVDE----L--NMRSIFTENDLVCAEVRS 157 (327)
Q Consensus 87 ~P~vGD--iVIGrV~~V~~~~w~VDI~-s~~~a~L~ls~v~fpg~i~rrr~~~de----~--~mr~~~~~GDlV~AeV~s 157 (327)
.+++|+ ..-|+|++|+..+++|.|. ....|.+|+|++.-.+. . ...|+ + .....|++||.|..+|.+
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d--~--~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~ 630 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRD--E--LVCSQENGTVQIKGETVYKVTDVIDVTIAE 630 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGG--G--EEEETTTTEEEETTEEEEETTCEEEEEEEE
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCc--e--eEEcccccEEEecCCCEeCCCCEEEEEEEE
Confidence 678999 9999999999999999994 45789999998741000 0 00111 1 224569999999999999
Q ss_pred cCC-CCceEEEE
Q 020356 158 SQG-DGSLQLQA 168 (327)
Q Consensus 158 v~~-~g~i~Lst 168 (327)
++. .+.+.|+.
T Consensus 631 vd~~~~~I~~~l 642 (644)
T 2id0_A 631 VRMETRSIIARP 642 (644)
T ss_dssp EETTTTEEEEEE
T ss_pred EeCCCCEEEEEE
Confidence 986 46677664
No 45
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=87.30 E-value=0.83 Score=48.26 Aligned_cols=77 Identities=19% Similarity=0.150 Sum_probs=49.4
Q ss_pred CCCCCEEEEEEEEEecceEEEEEcC-ccceeeecccccCCCcccccccccch----h---h----hhcccCCCCEEEEEE
Q 020356 88 PETGDIVIGRVIEVVPKRWKLEINF-TQDAILMLSSMNLPDGIQRRRTAVDE----L---N----MRSIFTENDLVCAEV 155 (327)
Q Consensus 88 P~vGDiVIGrV~~V~~~~w~VDI~s-~~~a~L~ls~v~fpg~i~rrr~~~de----~---~----mr~~~~~GDlV~AeV 155 (327)
.++ ...-|+|+++...+++|.|.. ...|.+|++++.-|+. . ...|+ + . ....|+.||.|.++|
T Consensus 668 ~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d--~--~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV 742 (760)
T 2vnu_D 668 NNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPN--S--AAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQV 742 (760)
T ss_dssp TCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGG--G--CEEETTTTEEEECCTTCSSCEEEETTCEEEEEE
T ss_pred cCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCc--e--eEEcccccEEEEecCCCccCcEEecCCEEEEEE
Confidence 444 799999999999999999976 5789999998731110 0 00010 0 1 136799999999999
Q ss_pred EecCCC----CceEEEEc
Q 020356 156 RSSQGD----GSLQLQAR 169 (327)
Q Consensus 156 ~sv~~~----g~i~Lstr 169 (327)
.+++.. +.+.|++|
T Consensus 743 ~~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 743 RSVMDPITSKRKAELLLK 760 (760)
T ss_dssp C--------CCEEEC---
T ss_pred EEEECccccCCcEEEEeC
Confidence 999865 56766653
No 46
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=84.50 E-value=1.4 Score=47.89 Aligned_cols=81 Identities=14% Similarity=0.028 Sum_probs=55.6
Q ss_pred CCCCCEEEEEEEEEecceEEEEEcC-ccceeeecccccCCCcc----cccccccchhh---hhcccCCCCEEEEEEEecC
Q 020356 88 PETGDIVIGRVIEVVPKRWKLEINF-TQDAILMLSSMNLPDGI----QRRRTAVDELN---MRSIFTENDLVCAEVRSSQ 159 (327)
Q Consensus 88 P~vGDiVIGrV~~V~~~~w~VDI~s-~~~a~L~ls~v~fpg~i----~rrr~~~de~~---mr~~~~~GDlV~AeV~sv~ 159 (327)
++ |...-|.|+++...+++|.|.. ...|.+|++++.-|+.- .+...-..+-. ....|+.||.|..+|.+++
T Consensus 885 ~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd 963 (977)
T 2wp8_J 885 NN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 963 (977)
T ss_dssp HT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCC
T ss_pred cc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEc
Confidence 44 8999999999999999999976 57899999987411100 00000000000 2356999999999999987
Q ss_pred CC----CceEEEEc
Q 020356 160 GD----GSLQLQAR 169 (327)
Q Consensus 160 ~~----g~i~Lstr 169 (327)
.. +.+.|+++
T Consensus 964 ~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 964 DPITSKRKAELLLK 977 (977)
T ss_dssp CSSSCCCCCCEEEC
T ss_pred CcccCCCceEEEeC
Confidence 52 56777764
No 47
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=79.26 E-value=4.1 Score=36.33 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=47.7
Q ss_pred ccCCCCCCEEEEEEEEEecceEEEEEcCccceeeecccccCCCcccccccc--------cchhhhhcccCCCCEEEEEEE
Q 020356 85 RYKPETGDIVIGRVIEVVPKRWKLEINFTQDAILMLSSMNLPDGIQRRRTA--------VDELNMRSIFTENDLVCAEVR 156 (327)
Q Consensus 85 rY~P~vGDiVIGrV~~V~~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~--------~de~~mr~~~~~GDlV~AeV~ 156 (327)
-+.|.+|+++.|+|+.+...+..+-+-.+.++.++-. .+|...+-.... .++-. -++|+.|+-+|.
T Consensus 124 VFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~--~ip~~~~f~~~~~~~~~~~wv~~~~----~~ig~~IRFrV~ 197 (214)
T 2rf4_A 124 VWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKN--NIPVDWTFVHNDGNRSLGHWVDSNG----EPIDGKLRFTVR 197 (214)
T ss_dssp EECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECST--TSCSSCBCCCCSCC-CCCCCBCSSC----CBCCSEEEEEEE
T ss_pred EEecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHH--HCCCcccccccccccCCCceEcCCC----CCCCCEEEEEEE
Confidence 4799999999999999999988887666777765444 344322211100 11101 125999999999
Q ss_pred ecCCCC
Q 020356 157 SSQGDG 162 (327)
Q Consensus 157 sv~~~g 162 (327)
++..++
T Consensus 198 ~~~~~~ 203 (214)
T 2rf4_A 198 NVHTTG 203 (214)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 987554
No 48
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=65.31 E-value=10 Score=29.42 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=40.6
Q ss_pred CCCCceEecCCccCCC-CCceeecCCEEe-eCCeEEEEEeeEEEEE-----CcEEEEEec
Q 020356 30 SNPNSCVTVGDTIPVY-EDGILKGHGTSD-QKGELAATVCGVVERI-----NKLIYVRAL 82 (327)
Q Consensus 30 ~~~~~iV~PGD~I~~~-ee~~~~G~Gty~-~~g~i~Ssv~G~v~~~-----nk~v~V~pl 82 (327)
.....+|.||..|.-- -..|.+|.++-. .|..|+|.+.|.|... .+.|+|.|.
T Consensus 25 ~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~VsV~p~ 84 (85)
T 3v2d_0 25 RYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRPL 84 (85)
T ss_dssp SCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECGGGCEEEEEEEC
T ss_pred ecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcCCCCEEEEEEEC
Confidence 4567789999988532 236899999876 4789999999999874 247888874
No 49
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=62.88 E-value=9.7 Score=29.90 Aligned_cols=54 Identities=22% Similarity=0.213 Sum_probs=40.8
Q ss_pred CCCCCceEecCCccCCC-CCceeecCCEEe-eCCeEEEEEeeEEEEE-----CcEEEEEec
Q 020356 29 KSNPNSCVTVGDTIPVY-EDGILKGHGTSD-QKGELAATVCGVVERI-----NKLIYVRAL 82 (327)
Q Consensus 29 ~~~~~~iV~PGD~I~~~-ee~~~~G~Gty~-~~g~i~Ssv~G~v~~~-----nk~v~V~pl 82 (327)
.......|.||..|.-- -..|.+|.++-. .|..|+|.+.|.|... .+.|+|.|.
T Consensus 24 K~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~V~V~p~ 84 (91)
T 2zjr_T 24 KKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKGKGARFISIEAA 84 (91)
T ss_dssp SSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEETTTEEEEEECCC
T ss_pred EecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcCCCcEEEEEEeC
Confidence 34567899999988532 236899999876 4788999999999874 247788774
No 50
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=57.82 E-value=16 Score=25.46 Aligned_cols=36 Identities=31% Similarity=0.550 Sum_probs=27.0
Q ss_pred cccHHHHHHHHHhhhhCCCCchhcccchHHHHHHHHHHHHhhh
Q 020356 280 NITVEVILETVNLSNSLNLDIHDMLGSEFYVLVAESEAERRSL 322 (327)
Q Consensus 280 ~i~~~~i~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (327)
.++++.++++|..|+++++ ++||+..+.+ +-+||+-
T Consensus 5 ~LSDe~LiesY~~A~el~L------~~dFI~LL~~-Ei~RR~L 40 (48)
T 3fyr_A 5 KLSDELLIESYFKATEMNL------NRDFIELIEN-EIKRRSL 40 (48)
T ss_dssp TSCHHHHHHHHHHHHHTTC------CHHHHHHHHH-HHHHHHC
T ss_pred hhcHHHHHHHHHHHHHhCC------CHHHHHHHHH-HHHHcCC
Confidence 5789999999999988875 5788776654 4455554
No 51
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=57.26 E-value=13 Score=28.34 Aligned_cols=53 Identities=25% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCCCCceEecCCccCCC-CCceeecCCEEe-eCCeEEEEEeeEEEEE-----C-cEEEEEe
Q 020356 29 KSNPNSCVTVGDTIPVY-EDGILKGHGTSD-QKGELAATVCGVVERI-----N-KLIYVRA 81 (327)
Q Consensus 29 ~~~~~~iV~PGD~I~~~-ee~~~~G~Gty~-~~g~i~Ssv~G~v~~~-----n-k~v~V~p 81 (327)
.......|.||..|.-- -..|.+|.++-. .|..|+|.+.|.|... + +.|+|.|
T Consensus 15 K~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p 75 (76)
T 3r8s_W 15 KRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEA 75 (76)
T ss_dssp SSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEEC
T ss_pred EecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEe
Confidence 34567899999988532 235899999876 4788999999999874 1 3577766
No 52
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=46.22 E-value=23 Score=29.41 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.6
Q ss_pred CCCCCEE---------EEEEEEEecceEEEEEcC
Q 020356 88 PETGDIV---------IGRVIEVVPKRWKLEINF 112 (327)
Q Consensus 88 P~vGDiV---------IGrV~~V~~~~w~VDI~s 112 (327)
.++||+| ||.|++..++.+.|.+-+
T Consensus 8 ~~~g~~v~~~yKTG~YigeI~e~~~~~~lVkVla 41 (130)
T 1y71_A 8 FEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLA 41 (130)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred CCccceeEEEEecceeEEEEEeecCCeEEEEEEE
Confidence 6899999 899999999999999874
No 53
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=45.90 E-value=68 Score=24.76 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=37.9
Q ss_pred CCCEEEEEEEEE---ecceEEEEE-cCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEecCC
Q 020356 90 TGDIVIGRVIEV---VPKRWKLEI-NFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSSQG 160 (327)
Q Consensus 90 vGDiVIGrV~~V---~~~~w~VDI-~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv~~ 160 (327)
.++.+-|+|... .+.+ ++.- ....+.++|+|++.-.+. ....+++|+.|..+|..+.+
T Consensus 13 ~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~------------~~~~l~~Ge~V~g~V~~i~~ 74 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA------------VRGNPQQGDRVEGKIKSITD 74 (101)
T ss_dssp ---CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC------------CCCCCCTTCEEEEEEEECCS
T ss_pred ccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc------------cccCCCCCCEEEEEEEEeCC
Confidence 567889999977 4455 4443 345788999998752210 01237899999999988754
No 54
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=35.38 E-value=30 Score=25.77 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=31.8
Q ss_pred CCCCceEecCCccCCC-CCceeecCCEEe-eCCeEEEEEeeEEE
Q 020356 30 SNPNSCVTVGDTIPVY-EDGILKGHGTSD-QKGELAATVCGVVE 71 (327)
Q Consensus 30 ~~~~~iV~PGD~I~~~-ee~~~~G~Gty~-~~g~i~Ssv~G~v~ 71 (327)
......|.||..|.-- -..|.+|.++-. .|..|+|.+.|.|.
T Consensus 25 ~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~ 68 (69)
T 2ftc_O 25 KMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVR 68 (69)
T ss_pred ecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEe
Confidence 3456789999988532 225888888866 47889999999985
No 55
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=35.00 E-value=1e+02 Score=23.28 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=33.1
Q ss_pred EEEEEEEEe-cceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEEec
Q 020356 94 VIGRVIEVV-PKRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVRSS 158 (327)
Q Consensus 94 VIGrV~~V~-~~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~sv 158 (327)
+.|+|++.. +..|.|.+.....-..++ +|-.++++. .+.+||.|..++...
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~~~c~i-----~GK~Rk~~I---------~Il~GD~V~ve~~~y 67 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHKVLAHI-----SGKMRQHYI---------RILPEDRVVVELSPY 67 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEE-----CHHHHHTTC---------CCCTTCEEEEEEETT
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEe-----CcceecCCc---------cCCCCCEEEEEECcc
Confidence 679999998 888999987533222223 342222221 278999999887654
No 56
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=32.68 E-value=87 Score=25.13 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=34.7
Q ss_pred cCCCCCCEEEEEEEEEec-ceEEEEEcCccceeeecccccCCCcccccccccchhhhhcccCCCCEEEEEEE
Q 020356 86 YKPETGDIVIGRVIEVVP-KRWKLEINFTQDAILMLSSMNLPDGIQRRRTAVDELNMRSIFTENDLVCAEVR 156 (327)
Q Consensus 86 Y~P~vGDiVIGrV~~V~~-~~w~VDI~s~~~a~L~ls~v~fpg~i~rrr~~~de~~mr~~~~~GDlV~AeV~ 156 (327)
..|..|+. +|+|++..+ ..|.|.+.....-. +.++|-.++ . -...+||.|..++.
T Consensus 27 ~~~~~~e~-~G~Vi~~lgn~~y~V~~~dG~~~l-----~~i~GK~Rk---~-------I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 27 VFKEEGQE-YGQVQRMLGNGRLDAYCFDGQKRL-----CHIRGKMRK---K-------VWVNPGDIVLVSLR 82 (117)
T ss_dssp CCCCTTEE-EEEEEEEEETTEEEEEETTSCEEE-----EECCHHHHH---H-------SCCCTTCEEEEEEC
T ss_pred cCCCCCEE-EEEEEEEcCCCEEEEEeCCCCEEE-----EEEcCceec---C-------CcCCCCCEEEEEEE
Confidence 37777765 899999988 88899775422211 224442211 1 22569999997764
No 57
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=28.03 E-value=61 Score=27.24 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=31.6
Q ss_pred CcEEEEEecCC----ccCCCCCCEEE-----EEEEEEecceEEEEEcCccce
Q 020356 74 NKLIYVRALRA----RYKPETGDIVI-----GRVIEVVPKRWKLEINFTQDA 116 (327)
Q Consensus 74 nk~v~V~pl~~----rY~P~vGDiVI-----GrV~~V~~~~w~VDI~s~~~a 116 (327)
..++...|... .-.|++|+.+. |+|+++..+...||-|.|.-+
T Consensus 85 ~~~V~~v~~~~f~~~~~~~~~G~~~~~~~~~~~V~~v~~~~V~vD~NHPLAG 136 (157)
T 3pr9_A 85 PSKIKLIPLSEFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAG 136 (157)
T ss_dssp GGGEEEEEHHHHHHTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTT
T ss_pred hHhEEEcCHHHCCcccCCcCCCcEEEecCCCeEEEEEcCCEEEEECCCccCC
Confidence 34555555432 13478888875 899999999999999987654
No 58
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=26.37 E-value=1.8e+02 Score=22.22 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=22.3
Q ss_pred ECcEEEEEecCCccCCC---CCCEEEEEEEEEe
Q 020356 73 INKLIYVRALRARYKPE---TGDIVIGRVIEVV 102 (327)
Q Consensus 73 ~nk~v~V~pl~~rY~P~---vGDiVIGrV~~V~ 102 (327)
.++.+++.|....|-|. ....|+|+|+.+.
T Consensus 70 ~~~~~~L~s~N~~y~~~~~~~~~~IiG~Vv~~~ 102 (109)
T 1kca_A 70 DSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQ 102 (109)
T ss_dssp ETTEEEEECSSTTSCCEECCTTCEEEEEEEEEE
T ss_pred eCCEEEEEECCCCCCCEEcCCCcEEEEEEEEEE
Confidence 46678899988777653 3577999999753
No 59
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=23.45 E-value=71 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=25.5
Q ss_pred CCCCCCEE-----EEEEEEEecceEEEEEcCccce
Q 020356 87 KPETGDIV-----IGRVIEVVPKRWKLEINFTQDA 116 (327)
Q Consensus 87 ~P~vGDiV-----IGrV~~V~~~~w~VDI~s~~~a 116 (327)
.|++|+.| .|+|++|..+...||-|.|.-+
T Consensus 103 ~~~~G~~~~~~~~~~~V~~v~~~~v~vD~NHPLAG 137 (151)
T 1ix5_A 103 EPEEGMVILAEGIPATITEVTDNEVTLDFNHELAG 137 (151)
T ss_dssp CCCTTEEEESSSCEEEEEEEETTEEEEECCCSSTT
T ss_pred cccccCEEEECCeEEEEEEEcCCEEEEeCCCCCCC
Confidence 57888776 4899999999999999988654
No 60
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=22.57 E-value=2e+02 Score=20.13 Aligned_cols=22 Identities=32% Similarity=0.276 Sum_probs=18.5
Q ss_pred CCCCEEEEEEEEEecceEEEEE
Q 020356 89 ETGDIVIGRVIEVVPKRWKLEI 110 (327)
Q Consensus 89 ~vGDiVIGrV~~V~~~~w~VDI 110 (327)
-+||.|..+|+.+..++|.-++
T Consensus 45 lPGE~V~v~i~k~kk~~~~a~~ 66 (68)
T 1yez_A 45 KVGDEVRIKVERVLPKFAFASV 66 (68)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEecCCEEEEEE
Confidence 4799999999999988886554
No 61
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=21.91 E-value=86 Score=28.15 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=31.2
Q ss_pred cEEEEEecCC----ccCCCCCCEEE-----EEEEEEecceEEEEEcCccce
Q 020356 75 KLIYVRALRA----RYKPETGDIVI-----GRVIEVVPKRWKLEINFTQDA 116 (327)
Q Consensus 75 k~v~V~pl~~----rY~P~vGDiVI-----GrV~~V~~~~w~VDI~s~~~a 116 (327)
.++...|... .-.|++|+.+. |+|+++..+...||-|.|.-|
T Consensus 86 ~lv~~vp~~~f~~~~~~~~vG~~~~~~~~~g~V~~v~~~~V~vD~NHPLAG 136 (231)
T 3prb_A 86 SKIKLIPLSEFTKRGIKPIKGLTITIDGIPGKIVSINSGRVLVDFNHELAG 136 (231)
T ss_dssp GGEEEEETHHHHTTTCCCCTTCEEEETTEEEEEEEEETTEEEEECSCTTTT
T ss_pred HHEEecCHHHCCcccCCCCCCcEEEecCCCEEEEEEcCCEEEEeCCCccCC
Confidence 4555555432 13478898886 899999999999999988655
Done!